PeakID (cmd=annotatePeaks.pl ATAC_HaCaT_all_reps_merged.bed hg38) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 13666 chr18 59864507 59864622 + 0 NA Intergenic Intergenic -35396 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 8563 chr13 106348074 106348264 + 0 NA Intergenic Intergenic -28394 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 28336 chr8 101437177 101437333 + 0 NA Intergenic Intergenic -55184 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 28801 chr8 143026450 143026554 + 0 NA Intergenic Intergenic 8017 NM_002346 4061 Hs.521903 NM_002346 ENSG00000160932 LY6E RIG-E|RIGE|SCA-2|SCA2|TSA-1 lymphocyte antigen 6 complex, locus E protein-coding 8434 chr13 87356456 87356532 + 0 NA Intergenic Intergenic 262246 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 5006 chr11 22153245 22153349 + 0 NA Intergenic MER102c|DNA|hAT-Charlie -39879 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|TMEM16E anoctamin 5 protein-coding 29429 chr9 85743302 85743410 + 0 NA Intergenic Intergenic -1327 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 27850 chr8 54135223 54135327 + 0 NA promoter-TSS (NM_014175) promoter-TSS (NM_014175) 54 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 10309 chr15 66460053 66460157 + 0 NA intron (NM_002755, intron 5 of 10) intron (NM_002755, intron 5 of 10) 36929 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 3509 chr10 30152182 30152230 + 0 NA Intergenic L1PB1|LINE|L1 -59646 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 27587 chr8 26628789 26628850 + 0 NA intron (NM_001386, intron 7 of 13) intron (NM_001386, intron 7 of 13) 50414 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 18581 chr21 43768272 43768376 + 0 NA Intergenic Intergenic 8051 NM_000100 1476 Hs.695 NM_000100 ENSG00000160213 CSTB CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B protein-coding 10122 chr15 52568952 52568957 + 0 NA promoter-TSS (NM_001330309) promoter-TSS (NM_001330309) -122 NM_001330309 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 14308 chr19 20052187 20052321 + 0 NA Intergenic CpG -12786 NM_033196 91120 Hs.306298 NM_033196 ENSG00000197124 ZNF682 BC39498_3 zinc finger protein 682 protein-coding 7652 chr12 110545436 110545476 + 0 NA intron (NR_138550, intron 2 of 4) intron (NR_138550, intron 2 of 4) 37803 NM_139283 160760 Hs.13854 NM_139283 ENSG00000196850 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog protein-coding 22537 chr5 54744546 54744650 + 0 NA promoter-TSS (NR_104658) promoter-TSS (NR_104658) -340 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 1387 chr1 98794367 98794518 + 0 NA Intergenic Intergenic 132762 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 17773 chr20 23100510 23100675 + 0 NA Intergenic Intergenic -14252 NM_012072 22918 Hs.97199 NM_012072 ENSG00000125810 CD93 C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1 CD93 molecule protein-coding 12798 chr17 60392233 60392435 + 0 NA promoter-TSS (NM_032582) promoter-TSS (NM_032582) -109 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 2634 chr1 212477298 212477398 + 0 NA Intergenic Intergenic 44461 NM_013349 29937 Hs.461787 NM_013349 ENSG00000117691 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 1785 chr1 154272389 154272526 + 0 NA promoter-TSS (NM_001018837) promoter-TSS (NM_001018837) -106 NM_006118 10456 Hs.199625 NM_006118 ENSG00000143575 HAX1 HCLSBP1|HS1BP1|SCN3 HCLS1 associated protein X-1 protein-coding 8419 chr13 79810718 79810822 + 0 NA Intergenic Intergenic 6384 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 30266 chr9 130941208 130941301 + 0 NA Intergenic Intergenic -2186 NM_001145106 84929 Hs.133205 NM_032843 ENSG00000130720 FIBCD1 - fibrinogen C domain containing 1 protein-coding 24114 chr6 16769229 16769306 + 0 NA Intergenic Intergenic -7777 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 18471 chr21 31659580 31659727 + 0 NA promoter-TSS (NM_000454) promoter-TSS (NM_000454) 31 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1, soluble protein-coding 9363 chr14 73950232 73950336 + 0 NA promoter-TSS (NM_182476) promoter-TSS (NM_182476) 32 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 18324 chr20 58102343 58102447 + 0 NA Intergenic Intergenic -48532 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 17145 chr2 221444244 221444299 + 0 NA intron (NM_001304536, intron 10 of 18) intron (NM_001304536, intron 10 of 18) 128087 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 26844 chr7 113099389 113099483 + 0 NA Intergenic Intergenic -11658 NM_001146265 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 16590 chr2 164910249 164910353 + 0 NA intron (NM_173512, intron 8 of 9) intron (NM_173512, intron 8 of 9) 45224 NM_001199148 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 29030 chr9 33025066 33025220 + 0 NA promoter-TSS (NM_001314039) promoter-TSS (NM_001314039) -60 NM_001314039 3301 Hs.445203 NM_001539 ENSG00000086061 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ heat shock protein family (Hsp40) member A1 protein-coding 27480 chr8 19326076 19326307 + 0 NA intron (NM_022071, intron 2 of 9) MIRb|SINE|MIR 12215 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 19092 chr3 4986904 4987008 + 0 NA Intergenic CpG -6995 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 18860 chr22 37197834 37197864 + 0 NA Intergenic MIRb|SINE|MIR -9559 NM_031910 114904 Hs.22011 NM_031910 ENSG00000133466 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and tumor necrosis factor related protein 6 protein-coding 4893 chr11 14499820 14499938 + 0 NA promoter-TSS (NM_016451) promoter-TSS (NM_016451) -10 NM_001144062 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 14392 chr19 36214615 36214692 + 0 NA promoter-TSS (NM_001099639) promoter-TSS (NM_001099639) 20 NM_152477 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 16309 chr2 129193059 129193085 + 0 NA Intergenic MER77|LTR|ERVL 80819 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 24783 chr6 71489889 71490025 + 0 NA Intergenic Intergenic 68930 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 19720 chr3 97914558 97914643 + 0 NA intron (NM_153605, intron 16 of 21) MIR|SINE|MIR 57851 NM_001261829 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 3497 chr10 29479158 29479332 + 0 NA intron (NM_003174, intron 27 of 35) MIR|SINE|MIR 65852 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 6531 chr12 6766903 6767027 + 0 NA intron (NM_002824, intron 1 of 4) CpG 648 NM_001330333 5763 Hs.504613 NM_002824 ENSG00000159335 PTMS ParaT parathymosin protein-coding 12093 chr17 9676832 9676996 + 0 NA intron (NM_153210, intron 5 of 14) intron (NM_153210, intron 5 of 14) 31377 NM_001267576 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 16355 chr2 134450969 134451120 + 0 NA 3' UTR (NM_002410, exon 16 of 16) 3' UTR (NM_002410, exon 16 of 16) 196785 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 7022 chr12 52176103 52176209 + 0 NA intron (NM_182507, intron 4 of 8) MamGypsy2-I|LTR|Gypsy 15844 NM_182507 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 3919 chr10 75192174 75192319 + 0 NA Intergenic Intergenic -17908 NM_001184783 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 1244 chr1 87331322 87331426 + 0 NA intron (NM_006769, intron 1 of 4) (CTCCCGT)n|Simple_repeat|Simple_repeat 2906 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 29393 chr9 83956609 83956701 + 0 NA promoter-TSS (NM_032307) promoter-TSS (NM_032307) 87 NM_032307 84267 Hs.208914 NM_032307 ENSG00000165118 C9orf64 - chromosome 9 open reading frame 64 protein-coding 27084 chr7 138460223 138460327 + 0 NA promoter-TSS (NM_003852) promoter-TSS (NM_003852) -59 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 1638 chr1 145927424 145927528 + 0 NA promoter-TSS (NM_005105) promoter-TSS (NM_005105) 60 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 25953 chr7 29287526 29287630 + 0 NA intron (NM_001293072, intron 1 of 12) MIR|SINE|MIR -78608 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 7816 chr12 122966674 122966746 + 0 NA promoter-TSS (NM_203444) promoter-TSS (NM_203444) -201 NM_001243013 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 21836 chr4 140308642 140308746 + 0 NA intron (NR_033939, intron 2 of 4) intron (NR_033939, intron 2 of 4) -34749 NM_001153446 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 1969 chr1 164613281 164613444 + 0 NA intron (NM_001204963, intron 2 of 8) L2b|LINE|L2 54002 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 28005 chr8 71059191 71059307 + 0 NA Intergenic Intergenic 297262 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 2203 chr1 183060498 183060650 + 0 NA intron (NM_002293, intron 1 of 27) L2c|LINE|L2 37114 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 22305 chr5 18969150 18969254 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 917070 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 21215 chr4 17614522 17614676 + 0 NA promoter-TSS (NM_025205) promoter-TSS (NM_025205) -29 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 4358 chr10 110918552 110918669 + 0 NA promoter-TSS (NM_001269039) promoter-TSS (NM_001269039) 326 NM_001195306 92482 Hs.232543 NM_001195304 ENSG00000214413 BBIP1 BBIP10|BBS18|NCRNA00081|bA348N5.3 BBSome interacting protein 1 protein-coding 14729 chr19 50922343 50922519 + 0 NA Intergenic Intergenic -11693 NM_001302961 9622 Hs.218366 NM_004917 ENSG00000167749 KLK4 AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein kallikrein related peptidase 4 protein-coding 16410 chr2 143730228 143730332 + 0 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -206787 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 28828 chr8 144078554 144078675 + 0 NA promoter-TSS (NM_019037) promoter-TSS (NM_019037) -5 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 15101 chr2 17616049 17616153 + 0 NA intron (NM_003385, intron 2 of 3) intron (NM_003385, intron 2 of 3) 75561 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 4003 chr10 84264722 84264826 + 0 NA Intergenic Intergenic -15206 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 - long intergenic non-protein coding RNA 858 ncRNA 16622 chr2 169012260 169012435 + 0 NA intron (NM_003742, intron 5 of 27) intron (NM_003742, intron 5 of 27) 18976 NM_003742 8647 Hs.658439 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 11648 chr16 75267974 75268108 + 0 NA promoter-TSS (NM_001170715) promoter-TSS (NM_001170715) 12 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 25867 chr7 23760199 23760353 + 0 NA intron (NM_032944, intron 10 of 23) intron (NM_032944, intron 10 of 23) 49950 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 23788 chr5 177389896 177390053 + 0 NA 3' UTR (NM_001167579, exon 9 of 9) 3' UTR (NM_001167579, exon 9 of 9) 5543 NM_001167579 6569 Hs.936 NM_003052 ENSG00000131183 SLC34A1 FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2 solute carrier family 34 member 1 protein-coding 10233 chr15 61879453 61879557 + 0 NA intron (NM_018080, intron 71 of 79) intron (NM_018080, intron 71 of 79) 180960 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 4836 chr11 12066213 12066292 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 35377 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LOC105376554 - uncharacterized LOC105376554 ncRNA 20398 chr3 150738506 150738610 + 0 NA intron (NR_121657, intron 1 of 2) intron (NR_121657, intron 1 of 2) 427 NR_121657 101928105 NR_121657 LOC101928105 - uncharacterized LOC101928105 ncRNA 13334 chr18 23871495 23871599 + 0 NA exon (NM_198129, exon 38 of 75) exon (NM_198129, exon 38 of 75) -1473 NM_001127718 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 21363 chr4 52722279 52722429 + 0 NA Intergenic CpG 9105 NR_003016 677810 Hs.635034 NR_003016 ENSG00000212588 SNORA26 HBI-6 small nucleolar RNA, H/ACA box 26 snoRNA 12242 chr17 27353763 27353925 + 0 NA Intergenic CpG 59764 NM_134265 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 14610 chr19 47113186 47113287 + 0 NA intron (NM_015168, intron 1 of 14) intron (NM_015168, intron 1 of 14) 516 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 11427 chr16 57536027 57536131 + 0 NA intron (NM_033212, intron 1 of 8) CpG 486 NM_033212 92922 Hs.644611 NM_033212 ENSG00000135736 CCDC102A - coiled-coil domain containing 102A protein-coding 22961 chr5 103258552 103258695 + 0 NA promoter-TSS (NM_001316968) promoter-TSS (NM_001316968) -79 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 15874 chr2 82993736 82993889 + 0 NA Intergenic Intergenic 137009 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 13766 chr18 71037011 71037068 + 0 NA Intergenic Intergenic -386182 NM_001278515 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding) protein-coding 18647 chr22 20393902 20394055 + 0 NA promoter-TSS (NM_001256523) promoter-TSS (NM_001256523) -137 NM_003426 7625 Hs.517418 NM_003426 ENSG00000185252 ZNF74 COS52|ZFP520|ZNF520|hZNF7 zinc finger protein 74 protein-coding 26831 chr7 112420413 112420517 + 0 NA Intergenic L2a|LINE|L2 -2679 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 31038 chrX 123960310 123960453 + 0 NA promoter-TSS (NM_001042749) promoter-TSS (NM_001042749) -179 NM_001042749 10735 Hs.496710 NM_006603 ENSG00000101972 STAG2 SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 20962 chr3 191329259 191329378 + 0 NA 5' UTR (NM_174908, exon 1 of 11) 5' UTR (NM_174908, exon 1 of 11) 233 NM_174908 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 27275 chr7 155951778 155951943 + 0 NA Intergenic Intergenic -9359 NR_144629 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 1322 chr1 93775355 93775489 + 0 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -71410 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 30706 chrX 49123785 49123889 + 0 NA promoter-TSS (NM_015698) promoter-TSS (NM_015698) -36 NM_015698 27238 Hs.503666 NM_015698 ENSG00000068394 GPKOW GPATC5|GPATCH5|Spp2|T54 G-patch domain and KOW motifs protein-coding 5804 chr11 86720147 86720224 + 0 NA Intergenic Intergenic -47549 NM_001161586 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 30604 chrX 37317895 37317999 + 0 NA Intergenic MER39|LTR|ERV1 -31328 NM_000950 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 26317 chr7 55571804 55571837 + 0 NA promoter-TSS (NM_001321250) promoter-TSS (NM_001321250) 48 NM_001321250 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding 9968 chr15 42057642 42057742 + 0 NA Intergenic Intergenic -6989 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 26707 chr7 100586321 100586465 + 0 NA promoter-TSS (NM_002319) promoter-TSS (NM_002319) 60 NM_033506 26261 Hs.283764 NM_012172 ENSG00000106336 FBXO24 FBX24 F-box protein 24 protein-coding 1259 chr1 88595429 88595533 + 0 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -88663 NM_001320709 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 26002 chr7 32942761 32942801 + 0 NA intron (NR_003500, intron 1 of 5) CpG 389 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - retinitis pigmentosa 9 pseudogene pseudo 9961 chr15 41774383 41774469 + 0 NA promoter-TSS (NM_001128608) promoter-TSS (NM_001128608) -8 NM_001128608 23005 Hs.513661 NM_014994 ENSG00000137802 MAPKBP1 JNKBP-1|JNKBP1 mitogen-activated protein kinase binding protein 1 protein-coding 8694 chr14 22159159 22159263 + 0 NA Intergenic MLT2E|LTR|ERVL 430026 NM_001344 1603 Hs.82890 NM_001344 ENSG00000129562 DAD1 OST2 defender against cell death 1 protein-coding 5464 chr11 65150863 65150938 + 0 NA Intergenic Intergenic -16368 NM_172230 84447 Hs.75859 NM_032431 ENSG00000162298 SYVN1 DER3|HRD1 synoviolin 1 protein-coding 25747 chr7 16916270 16916374 + 0 NA Intergenic LTR78|LTR|ERV1 -34333 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 11280 chr16 46831481 46831564 + 0 NA promoter-TSS (NM_001001436) promoter-TSS (NM_001001436) -360 NM_001001436 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 9985 chr15 43133560 43133597 + 0 NA promoter-TSS (NM_024956) promoter-TSS (NM_024956) 54 NM_001347029 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 29998 chr9 117704026 117704130 + 0 NA promoter-TSS (NM_003266) promoter-TSS (NM_003266) -97 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 18931 chr22 40498598 40498685 + 0 NA intron (NM_020831, intron 3 of 14) L2a|LINE|L2 -23159 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 LOC101927257 - uncharacterized LOC101927257 ncRNA 5401 chr11 63567447 63567530 + 0 NA Intergenic LTR43|LTR|ERV1 -4105 NM_017878 54979 Hs.272805 NM_017878 ENSG00000133328 HRASLS2 PLA1/2-2 HRAS like suppressor 2 protein-coding 3475 chr10 27240503 27240607 + 0 NA 5' UTR (NM_001271512, exon 1 of 12) 5' UTR (NM_001271512, exon 1 of 12) 324 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 8193 chr13 44188432 44188536 + 0 NA Intergenic L2a|LINE|L2 7716 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 20906 chr3 189270430 189270534 + 0 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -29888 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 6327 chr11 128905858 128905867 + 0 NA promoter-TSS (NM_145013) promoter-TSS (NM_145013) -165 NM_145013 219833 Hs.689860 NM_145013 ENSG00000174370 C11orf45 - chromosome 11 open reading frame 45 protein-coding 21316 chr4 41990395 41990572 + 0 NA promoter-TSS (NM_006345) promoter-TSS (NM_006345) -23 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 11869 chr17 691661 691765 + 0 NA intron (NM_001128159, intron 4 of 21) MER44B|DNA|TcMar-Tigger 23143 NM_001128159 55275 Hs.461819 NM_018289 ENSG00000141252 VPS53 HCCS1|PCH2E|hVps53L|pp13624 VPS53, GARP complex subunit protein-coding 24290 chr6 28923978 28924121 + 0 NA promoter-TSS (NM_006510).5 promoter-TSS (NM_006510).5 -58 NM_006510 5987 Hs.440382 NM_006510 ENSG00000204713 TRIM27 RFP|RNF76 tripartite motif containing 27 protein-coding 11798 chr16 85879043 85879079 + 0 NA Intergenic Intergenic -20107 NM_002163 3394 Hs.137427 NM_002163 ENSG00000140968 IRF8 H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8 interferon regulatory factor 8 protein-coding 20873 chr3 186760634 186760639 + 0 NA Intergenic MER21A|LTR|ERVL -22936 NM_001967 1974 Hs.518475 NM_001967 ENSG00000156976 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 13020 chr17 75779830 75779981 + 0 NA promoter-TSS (NM_005324) promoter-TSS (NM_005324) 30 NM_005324 3021 Hs.180877 NM_005324 ENSG00000132475 H3F3B H3.3B H3 histone family member 3B protein-coding 1203 chr1 85201617 85201748 + 0 NA promoter-TSS (NM_032184) promoter-TSS (NM_032184) -637 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 4261 chr10 102646183 102646222 + 0 NA intron (NM_001345950, intron 1 of 4) intron (NM_001345950, intron 1 of 4) 1707 NM_030912 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 23311 chr5 138575876 138575950 + 0 NA promoter-TSS (NM_004134) promoter-TSS (NM_004134) -284 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 28275 chr8 98825582 98825705 + 0 NA promoter-TSS (NM_001256313) promoter-TSS (NM_001256313) 28 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 17814 chr20 25237945 25238084 + 0 NA Intergenic L1ME3|LINE|L1 -10056 NM_002862 5834 Hs.368157 NM_002862 ENSG00000100994 PYGB GPBB glycogen phosphorylase B protein-coding 10919 chr16 3158639 3158791 + 0 NA Intergenic CpG 14424 NR_132322 197350 Hs.434132 NR_132322 ENSG00000228146 CASP16P CASP16 caspase 16, pseudogene pseudo 4429 chr10 116947980 116948084 + 0 NA intron (NM_001258300, intron 8 of 17) intron (NM_001258300, intron 8 of 17) 57545 NM_001127211 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 1354 chr1 94950178 94950282 + 0 NA intron (NR_033998, intron 2 of 3) MER68|LTR|ERVL 22202 NR_033998 729970 Hs.297988 NR_033998 ENSG00000235501 LOC729970 - hCG2028352-like ncRNA 10390 chr15 71093420 71093524 + 0 NA Intergenic Intergenic 22028 NM_001102658 196993 Hs.646533 NM_001102658 ENSG00000225362 CT62 - cancer/testis antigen 62 protein-coding 27493 chr8 20159859 20159925 + 0 NA intron (NM_001142324, intron 10 of 15) MIRc|SINE|MIR 23314 NM_001135691 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 23574 chr5 154368182 154368286 + 0 NA intron (NM_198321, intron 4 of 11) intron (NM_198321, intron 4 of 11) 21128 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 21881 chr4 147578134 147578269 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -39187 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 8 chr1 1073781 1073935 + 0 NA intron (NM_001205252, intron 1 of 1) intron (NM_001205252, intron 1 of 1) 449 NM_001205252 401934 Hs.568137 NM_001205252 ENSG00000237330 RNF223 - ring finger protein 223 protein-coding 2359 chr1 201154469 201154602 + 0 NA promoter-TSS (NR_109920) promoter-TSS (NR_109920) 20 NM_016456 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 18469 chr21 31366905 31367009 + 0 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 192020 NM_003253 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 28873 chr9 1337225 1337329 + 0 NA Intergenic Intergenic 286657 NM_181872 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 29842 chr9 109716745 109716849 + 0 NA intron (NM_001037293, intron 1 of 6) intron (NM_001037293, intron 1 of 6) -63500 NM_053016 114299 Hs.591908 NM_053016 ENSG00000157654 PALM2 AKAP2 paralemmin 2 protein-coding 15700 chr2 66840143 66840264 + 0 NA Intergenic Intergenic -64233 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 29527 chr9 91302909 91303013 + 0 NA intron (NM_001306190, intron 3 of 8) intron (NM_001306190, intron 3 of 8) 58963 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 11763 chr16 84145041 84145197 + 0 NA promoter-TSS (NM_178452) promoter-TSS (NM_178452) 76 NM_031463 83693 Hs.555992 NM_031463 ENSG00000103160 HSDL1 SDR12C3 hydroxysteroid dehydrogenase like 1 protein-coding 11651 chr16 75342438 75342602 + 0 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) -74467 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 21091 chr3 197960075 197960179 + 0 NA promoter-TSS (NM_001323028) promoter-TSS (NM_001323028) -73 NR_026787 89782 Hs.518540 NM_033029 ENSG00000185621 LMLN GP63|INV|IX14|MSP leishmanolysin like peptidase protein-coding 19727 chr3 98483328 98483428 + 0 NA Intergenic L1PA7|LINE|L1 13898 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 29381 chr9 83299649 83299797 + 0 NA intron (NM_001244961, intron 5 of 9) intron (NM_001244961, intron 5 of 9) 32238 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 9683 chr14 101151357 101151551 + 0 NA Intergenic Intergenic 81543 NR_047664 100507257 Hs.301755 NR_047664 ENSG00000223403 MEG9 LINC00584 maternally expressed 9 (non-protein coding) ncRNA 27274 chr7 155922107 155922253 + 0 NA Intergenic Intergenic -39039 NR_144629 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 21234 chr4 22179136 22179240 + 0 NA Intergenic Intergenic 160478 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 27834 chr8 53353380 53353532 + 0 NA Intergenic Intergenic -101759 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 24629 chr6 46045392 46045496 + 0 NA intron (NM_001114086, intron 1 of 5) intron (NM_001114086, intron 1 of 5) -29555 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 19071 chr22_KI270733v1_random 168946 168989 + 0 NA Intergenic CpG -1248 NR_128714 103504728 NR_128714 ENSG00000264063 MIR3687-2 hsa-mir-3687-2 microRNA 3687-2 ncRNA 16073 chr2 105744782 105744886 + 0 NA promoter-TSS (NM_003581) promoter-TSS (NM_003581) -229 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 8611 chr13 110419466 110419570 + 0 NA intron (NM_001846, intron 4 of 47) intron (NM_001846, intron 4 of 47) 43769 NM_001267044 100129836 Hs.640035 NM_001267044 COL4A2-AS2 - COL4A2 antisense RNA 2 protein-coding 6631 chr12 12872514 12872618 + 0 NA Intergenic Intergenic -2911 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 21057 chr3 196632448 196632451 + 0 NA non-coding (NR_132101, exon 1 of 2) non-coding (NR_132101, exon 1 of 2) 138 NR_132101 101929769 Hs.518527 NR_132101 ENSG00000232065 LINC01063 - long intergenic non-protein coding RNA 1063 ncRNA 29849 chr9 110283799 110283903 + 0 NA Intergenic MIRb|SINE|MIR -27211 NM_001244938 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 19165 chr3 11770569 11770703 + 0 NA Intergenic Intergenic -49868 NM_014667 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 14419 chr19 38559721 38559722 + 0 NA intron (NM_001042723, intron 88 of 104) intron (NM_001042723, intron 88 of 104) -36626 NR_134907 105372397 Hs.570011 NR_134907 ENSG00000267291 LOC105372397 - uncharacterized LOC105372397 ncRNA 28829 chr8 144094922 144095026 + 0 NA promoter-TSS (NM_001916) promoter-TSS (NM_001916) -61 NM_001916 1537 Hs.289271 NM_001916 ENSG00000179091 CYC1 MC3DN6|UQCR4 cytochrome c1 protein-coding 12028 chr17 7262426 7262547 + 0 NA 5' UTR (NM_001185023, exon 1 of 3) 5' UTR (NM_001185023, exon 1 of 3) 459 NM_001307 1366 Hs.513915 NM_001307 ENSG00000181885 CLDN7 CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1 claudin 7 protein-coding 31095 chrX 135521767 135521946 + 0 NA intron (NM_182540, intron 2 of 16) (CTC)n|Simple_repeat|Simple_repeat -1182 NR_046740 100874118 Hs.602150 NR_046740 ENSG00000225235 INTS6L-AS1 DDX26B-AS1 INTS6L antisense RNA 1 ncRNA 24727 chr6 55636531 55636578 + 0 NA Intergenic Intergenic -57340 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 23171 chr5 128774794 128774898 + 0 NA Intergenic Intergenic -190281 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 14880 chr19 58519870 58520000 + 0 NA promoter-TSS (NM_001316981) promoter-TSS (NM_001316981) 74 NM_001316979 84878 Hs.515662 NM_032792 ENSG00000119574 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 12882 chr17 66952236 66952393 + 0 NA Intergenic Intergenic -12550 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 5970 chr11 102306263 102306385 + 0 NA Intergenic Intergenic -11126 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 4094 chr10 93466465 93466573 + 0 NA intron (NM_133337, intron 1 of 52) intron (NM_133337, intron 1 of 52) 15798 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 15972 chr2 96428055 96428178 + 0 NA Intergenic MER83B-int|LTR|ERV1 77269 NM_001285486 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 13581 chr18 51030118 51030178 + 0 NA promoter-TSS (NM_005359) promoter-TSS (NM_005359) -65 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 4704 chr11 3049949 3050053 + 0 NA intron (NM_001014437, intron 1 of 22) intron (NM_001014437, intron 1 of 22) 7450 NM_001014437 833 Hs.274873 NM_001751 ENSG00000110619 CARS CARS1|CYSRS|MGC:11246 cysteinyl-tRNA synthetase protein-coding 1266 chr1 88985209 88985364 + 0 NA intron (NM_019610, intron 1 of 1) intron (NM_019610, intron 1 of 1) 7674 NM_019610 494115 Hs.481898 NM_019610 ENSG00000213516 RBMXL1 RBM1 RNA binding motif protein, X-linked like 1 protein-coding 29187 chr9 71680726 71680830 + 0 NA Intergenic Intergenic 88106 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 6578 chr12 9347399 9347491 + 0 NA Intergenic Intergenic -20019 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LOC101930452 - uncharacterized LOC101930452 ncRNA 3419 chr10 23345996 23346148 + 0 NA Intergenic Intergenic -1229 NM_153714 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552|bA215C7.4 chromosome 10 open reading frame 67 protein-coding 18026 chr20 41134043 41134147 + 0 NA intron (NR_109889, intron 3 of 6) intron (NR_109889, intron 3 of 6) -3426 NM_182811 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 30378 chr9 137086837 137086941 + 0 NA promoter-TSS (NM_016219) promoter-TSS (NM_016219) -38 NR_045721 11253 Hs.279881 NM_016219 ENSG00000177239 MAN1B1 ERMAN1|ERManI|MANA-ER|MRT15 mannosidase alpha class 1B member 1 protein-coding 23416 chr5 143403652 143403831 + 0 NA promoter-TSS (NM_000176) promoter-TSS (NM_000176) -52 NM_001204262 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 10430 chr15 73956970 73957057 + 0 NA Intergenic Intergenic -28765 NR_040069 100287616 Hs.599785 NR_040066 ENSG00000261801 LOXL1-AS1 - LOXL1 antisense RNA 1 ncRNA 20983 chr3 192901514 192901618 + 0 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 16595 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 30424 chrUn_KI270442v1 55557 55658 + 0 NA NA (GGAAT)n|Simple_repeat|Simple_repeat NA NA 30324 chr9 133479073 133479177 + 0 NA promoter-TSS (NM_017585) promoter-TSS (NM_017585) 29 NM_017585 11182 Hs.244378 NM_017585 ENSG00000160326 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 member 6 protein-coding 15852 chr2 75600503 75600627 + 0 NA Intergenic Intergenic -30843 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 10052 chr15 48868705 48868809 + 0 NA intron (NM_203349, intron 5 of 11) intron (NM_203349, intron 5 of 11) -9336 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 13661 chr18 59716156 59716260 + 0 NA Intergenic Intergenic -18796 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 7514 chr12 100163991 100164118 + 0 NA TTS (NR_024261) TTS (NR_024261) 9289 NR_036632 55592 Hs.524660 NM_017600 ENSG00000238105 GOLGA2P5 GOLGA2B|GOLGA2L1 golgin A2 pseudogene 5 pseudo 39 chr1 2227758 2227868 + 0 NA promoter-TSS (NM_003036) promoter-TSS (NM_003036) -882 NM_003036 6497 Hs.656507 NM_003036 ENSG00000157933 SKI SGS|SKV SKI proto-oncogene protein-coding 27471 chr8 19041642 19041774 + 0 NA Intergenic Intergenic -28022 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 29697 chr9 99966832 99966981 + 0 NA intron (NM_017919, intron 6 of 7) L3|LINE|CR1 60273 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 22355 chr5 34598224 34598353 + 0 NA Intergenic Intergenic -58040 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 11375 chr16 54846962 54847064 + 0 NA TTS (NR_134971) TTS (NR_134971) 1220 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 10300 chr15 65611168 65611296 + 0 NA promoter-TSS (NM_001136043) promoter-TSS (NM_001136043) 57 NR_045104 81556 Hs.6686 NM_030800 ENSG00000138614 INTS14 C15orf44|VWA9 integrator complex subunit 14 protein-coding 29918 chr9 113682567 113682653 + 0 NA Intergenic Intergenic 88456 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 24176 chr6 21277743 21277927 + 0 NA Intergenic Intergenic 234057 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 20716 chr3 177602903 177603020 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 161040 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 25719 chr7 14754728 14754832 + 0 NA intron (NM_145695, intron 2 of 23) intron (NM_145695, intron 2 of 23) 86670 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 25854 chr7 23273175 23273360 + 0 NA intron (NM_001005340, intron 9 of 10) intron (NM_001005340, intron 9 of 10) -26054 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 20644 chr3 171460481 171460585 + 0 NA promoter-TSS (NM_015028) promoter-TSS (NM_015028) -125 NM_001161562 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 12543 chr17 43469210 43469414 + 0 NA Intergenic Intergenic -14553 NM_001322219 1659 Hs.463105 NM_004941 ENSG00000067596 DHX8 DDX8|HRH1|PRP22|PRPF22 DEAH-box helicase 8 protein-coding 15984 chr2 96927973 96928125 + 0 NA intron (NM_001122646, intron 9 of 16) intron (NM_001122646, intron 9 of 16) 8943 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 16583 chr2 164388635 164388747 + 0 NA Intergenic Intergenic 179859 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 8091 chr13 33388321 33388461 + 0 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -102627 NM_178006 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 15705 chr2 67259995 67260099 + 0 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) -44728 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 4570 chr10 125087675 125087780 + 0 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -54857 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 17244 chr2 230054165 230054269 + 0 NA intron (NM_152527, intron 2 of 4) intron (NM_152527, intron 2 of 4) 14782 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 2350 chr1 200640148 200640252 + 0 NA TTS (NM_001320181) TTS (NM_001320181) -19466 NM_014875 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MKS12 kinesin family member 14 protein-coding 2479 chr1 205441161 205441285 + 0 NA intron (NR_103783, intron 1 of 1) intron (NR_103783, intron 1 of 1) 7175 NR_029893 442891 NR_029893 ENSG00000199059 MIR135B MIRN135B|mir-135b microRNA 135b ncRNA 1 chr1 181372 181526 + 0 NA Intergenic TAR1|Satellite|telo 6509 NR_106918 102466751 NR_106918 ENSG00000278267 MIR6859-1 hsa-mir-6859-1 microRNA 6859-1 ncRNA 16527 chr2 159124774 159124878 + 0 NA intron (NM_033394, intron 4 of 26) AluJb|SINE|Alu -62009 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 12262 chr17 28571502 28571620 + 0 NA 5' UTR (NM_033198, exon 1 of 12) 5' UTR (NM_033198, exon 1 of 12) 308 NM_033198 94005 Hs.462550 NM_033198 ENSG00000087111 PIGS - phosphatidylinositol glycan anchor biosynthesis class S protein-coding 506 chr1 30618556 30618661 + 0 NA Intergenic MIRb|SINE|MIR -100164 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 28181 chr8 91070173 91070365 + 0 NA promoter-TSS (NR_110439) promoter-TSS (NR_110439) 73 NM_001286745 51633 Hs.30532 NM_016023 ENSG00000155100 OTUD6B CGI-77|DUBA-5|DUBA5 OTU domain containing 6B protein-coding 31083 chrX 134797172 134797304 + 0 NA promoter-TSS (NM_001170756) promoter-TSS (NM_001170756) -6 NM_001166600 159090 Hs.404706 NM_145284 ENSG00000156504 FAM122B SPACIA2 family with sequence similarity 122B protein-coding 22227 chr5 10962203 10962330 + 0 NA Intergenic LTR18B|LTR|ERVL -200991 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 19252 chr3 23568014 23568118 + 0 NA intron (NM_152653, intron 5 of 5) intron (NM_152653, intron 5 of 5) -237827 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 4184 chr10 98293836 98293917 + 0 NA Intergenic Intergenic -25626 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 31031 chrX 123733061 123733109 + 0 NA promoter-TSS (NM_001081550) promoter-TSS (NM_001081550) -31 NM_001081550 57187 Hs.149991 NM_020449 ENSG00000125676 THOC2 CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 23318 chr5 139341711 139341857 + 0 NA promoter-TSS (NM_016480) promoter-TSS (NM_016480) -48 NM_016480 51247 Hs.396644 NM_016480 ENSG00000120727 PAIP2 PAIP-2|PAIP2A poly(A) binding protein interacting protein 2 protein-coding 7950 chr13 21298049 21298224 + 0 NA promoter-TSS (NR_038939) promoter-TSS (NR_038939) 11 NR_046461 650794 Hs.147563 NR_038939 MIPEPP3 - mitochondrial intermediate peptidase pseudogene 3 pseudo 15521 chr2 48314877 48315024 + 0 NA intron (NM_002158, intron 1 of 6) CpG 294 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 10770 chr15 95872608 95872725 + 0 NA Intergenic Kanga1b|DNA|TcMar-Tc2 439573 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 8100 chr13 34044682 34044843 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 226693 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 7583 chr12 106296260 106296364 + 0 NA Intergenic Intergenic -6479 NM_001286262 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 8600 chr13 110017599 110017703 + 0 NA Intergenic Intergenic -35634 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 29164 chr9 70258801 70258935 + 0 NA promoter-TSS (NM_015110) promoter-TSS (NM_015110) 6 NR_039990 100507299 Hs.556816 NR_039990 SMC5-AS1 MAMDC2-AS2 SMC5 antisense RNA 1 (head to head) ncRNA 8537 chr13 103356403 103356410 + 0 NA Intergenic Intergenic -68794 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 18528 chr21 38289805 38289950 + 0 NA intron (NM_170737, intron 1 of 2) intron (NM_170737, intron 1 of 2) 17457 NM_170737 3772 Hs.411299 NM_002243 ENSG00000157551 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium voltage-gated channel subfamily J member 15 protein-coding 23379 chr5 141833194 141833304 + 0 NA Intergenic Intergenic 32953 NM_001278615 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 20059 chr3 124793508 124793511 + 0 NA intron (NM_002213, intron 10 of 14) intron (NM_002213, intron 10 of 14) 61070 NR_036088 100422864 NR_036088 ENSG00000265981 MIR544B - microRNA 544b ncRNA 11633 chr16 74985057 74985221 + 0 NA promoter-TSS (NM_001324172) promoter-TSS (NM_001324172) 7 NM_001324171 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 3862 chr10 71851167 71851362 + 0 NA 5' UTR (NM_002778, exon 1 of 14) 5' UTR (NM_002778, exon 1 of 14) 111 NM_002778 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 1517 chr1 111948752 111948845 + 0 NA intron (NM_004980, intron 2 of 7) GA-rich|Low_complexity|Low_complexity 39141 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 8941 chr14 45679901 45679964 + 0 NA Intergenic Intergenic -384227 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 28725 chr8 133320509 133320613 + 0 NA Intergenic Intergenic -23257 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 16716 chr2 177322840 177322977 + 0 NA intron (NR_026966, intron 6 of 8) intron (NR_026966, intron 6 of 8) -9026 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 2808 chr1 224183830 224183934 + 0 NA intron (NM_001321542, intron 1 of 2) CpG 371 NM_001321542 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 30197 chr9 128733320 128733424 + 0 NA TTS (NR_046240) TTS (NR_046240) 8910 NR_046240 100506100 Hs.62946 NR_046240 ENSG00000223478 LOC100506100 - uncharacterized LOC100506100 ncRNA 31016 chrX 120250663 120250767 + 0 NA promoter-TSS (NM_006777) promoter-TSS (NM_006777) -37 NM_006777 10009 Hs.143604 NM_006777 ENSG00000177485 ZBTB33 ZNF-kaiso|ZNF348 zinc finger and BTB domain containing 33 protein-coding 30082 chr9 124320478 124320582 + 0 NA intron (NM_001166167, intron 4 of 9) intron (NM_001166167, intron 4 of 9) 28110 NM_001166169 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 1973 chr1 164660581 164660685 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 101273 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 12230 chr17 26596530 26596677 + 0 NA Intergenic ALR/Alpha|Satellite|centr 492638 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 8214 chr13 45292303 45292407 + 0 NA Intergenic Intergenic 45254 NR_002967 677814 Hs.374596 NR_002967 ENSG00000199477 SNORA31 ACA31|SNORA31A small nucleolar RNA, H/ACA box 31 snoRNA 12565 chr17 44587531 44587605 + 0 NA Intergenic Intergenic 30124 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 6797 chr12 27975317 27975448 + 0 NA Intergenic CpG -3399 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 28359 chr8 102864308 102864412 + 0 NA promoter-TSS (NM_148174) promoter-TSS (NM_148174) 89 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 25154 chr6 131063183 131063287 + 0 NA promoter-TSS (NM_001135555) promoter-TSS (NM_001135555) 87 NM_001135554 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 4827 chr11 11243872 11243886 + 0 NA Intergenic Intergenic 109478 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 23659 chr5 163696417 163696521 + 0 NA Intergenic Intergenic 190941 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 19741 chr3 98901786 98901924 + 0 NA promoter-TSS (NM_080927) promoter-TSS (NM_080927) -166 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 9842 chr15 33242231 33242335 + 0 NA intron (NR_046005, intron 6 of 8) intron (NR_046005, intron 6 of 8) 5272 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 3849 chr10 71333297 71333401 + 0 NA intron (NR_033414, intron 2 of 3) intron (NR_033414, intron 2 of 3) 14096 NM_018344 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 19901 chr3 112991223 112991340 + 0 NA exon (NM_014170, exon 1 of 6) exon (NM_014170, exon 1 of 6) 328 NM_138485 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 29476 chr9 88076942 88076993 + 0 NA intron (NR_135138, intron 1 of 1) CpG 933 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 14065 chr19 10119938 10120095 + 0 NA promoter-TSS (NM_003755) promoter-TSS (NM_003755) -92 NM_003755 8666 Hs.529059 NM_003755 ENSG00000130811 EIF3G EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44 eukaryotic translation initiation factor 3 subunit G protein-coding 16961 chr2 205746388 205746492 + 0 NA intron (NM_201279, intron 10 of 15) intron (NM_201279, intron 10 of 15) 63940 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 8776 chr14 28652908 28652918 + 0 NA Intergenic Charlie7|DNA|hAT-Charlie 112406 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 12303 chr17 30906212 30906233 + 0 NA promoter-TSS (NM_024683) promoter-TSS (NM_024683) 46 NM_024683 79736 Hs.317340 NM_024683 ENSG00000172171 TEFM C17orf42 transcription elongation factor, mitochondrial protein-coding 13196 chr18 107137 107291 + 0 NA Intergenic BSR/Beta|Satellite|Satellite -1851 NR_033770 727758 Hs.585843 NR_033770 ENSG00000263006 ROCK1P1 - Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudo 16203 chr2 118881653 118881789 + 0 NA Intergenic Intergenic -33538 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 11707 chr16 80718620 80718797 + 0 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 85570 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y-like 2 protein-coding 8711 chr14 22887386 22887449 + 0 NA 3' UTR (NM_173527, exon 5 of 5) 3' UTR (NM_173527, exon 5 of 5) 4194 NM_173527 161253 Hs.444911 NM_173527 ENSG00000139890 REM2 - RRAD and GEM like GTPase 2 protein-coding 12961 chr17 73291573 73291677 + 0 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 20379 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 4405 chr10 114624013 114624185 + 0 NA intron (NM_001322885, intron 1 of 20) intron (NM_001322885, intron 1 of 20) 34200 NM_002313 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 21236 chr4 22202809 22202913 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR 136805 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 13589 chr18 51339984 51340088 + 0 NA Intergenic Intergenic -52006 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 2029 chr1 168113074 168113208 + 0 NA intron (NM_001267611, intron 1 of 5) intron (NM_001267611, intron 1 of 5) 23295 NM_001267612 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 25781 chr7 18972644 18972748 + 0 NA intron (NM_178425, intron 23 of 24) intron (NM_178425, intron 23 of 24) 144976 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 5671 chr11 74634580 74634684 + 0 NA non-coding (NR_046410, exon 10 of 12) non-coding (NR_046410, exon 10 of 12) 42027 NR_046410 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 23584 chr5 154857749 154857926 + 0 NA promoter-TSS (NM_001301075) promoter-TSS (NM_001301075) -412 NM_001301083 9337 Hs.26703 NM_004779 ENSG00000155508 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex subunit 8 protein-coding 19096 chr3 5004755 5004933 + 0 NA Intergenic Intergenic -24883 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 4218 chr10 100364950 100365096 + 0 NA TTS (NM_005063) TTS (NM_005063) -8553 NR_026762 90271 Hs.628088 NR_026762 OLMALINC C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS oligodendrocyte maturation-associated long intergenic non-coding RNA ncRNA 23225 chr5 133051755 133051853 + 0 NA promoter-TSS (NM_002154) promoter-TSS (NM_002154) -166 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 25426 chr6 159279819 159279924 + 0 NA Intergenic LTR44|LTR|ERV1 -103660 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LOC102724053 - uncharacterized LOC102724053 ncRNA 20594 chr3 168424506 168424643 + 0 NA intron (NR_021485, intron 3 of 15) MIR3|SINE|MIR -127280 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 19986 chr3 119463639 119463784 + 0 NA promoter-TSS (NM_018266) promoter-TSS (NM_018266) -29 NM_018266 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 20 chr1 1421333 1421533 + 0 NA promoter-TSS (NM_001145210) promoter-TSS (NM_001145210) 11 NM_001243535 441869 Hs.381222 NM_001145210 ENSG00000235098 ANKRD65 - ankyrin repeat domain 65 protein-coding 25134 chr6 128204703 128204842 + 0 NA intron (NM_001135648, intron 6 of 30) L1PA11|LINE|L1 176907 NR_125849 101928140 Hs.656779 NR_125849 LOC101928140 - uncharacterized LOC101928140 ncRNA 23295 chr5 137833519 137833673 + 0 NA Intergenic Intergenic 32403 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 9808 chr15 29924748 29924852 + 0 NA intron (NM_001301025, intron 2 of 28).2 intron (NM_001301025, intron 2 of 28).2 43999 NM_001301025 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 14328 chr19 29760182 29760364 + 0 NA Intergenic Intergenic -44484 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 29273 chr9 75892498 75892655 + 0 NA intron (NM_001190482, intron 1 of 36) CpG 1932 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 15741 chr2 69519001 69519016 + 0 NA exon (NM_014911, exon 12 of 22) exon (NM_014911, exon 12 of 22) 1163 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 1983 chr1 165162970 165163124 + 0 NA Intergenic Intergenic 193194 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 20046 chr3 123799758 123799885 + 0 NA intron (NM_053026, intron 3 of 32) intron (NM_053026, intron 3 of 32) 84481 NM_053026 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 11152 chr16 24539467 24539591 + 0 NA promoter-TSS (NM_006910) promoter-TSS (NM_006910) -58 NM_006910 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 26367 chr7 69739433 69739505 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 140550 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 16278 chr2 127408062 127408195 + 0 NA Intergenic CpG -10292 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 25968 chr7 30323177 30323305 + 0 NA intron (NM_147128, intron 1 of 4) intron (NM_147128, intron 1 of 4) -33351 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 4304 chr10 104322493 104322628 + 0 NA promoter-TSS (NR_120622) promoter-TSS (NR_120622) -804 NR_120622 101927472 Hs.670333 NR_120622 LOC101927472 - uncharacterized LOC101927472 ncRNA 468 chr1 27959892 27960036 + 0 NA TTS (NM_001304579) TTS (NM_001304579) 502 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 23983 chr6 7910722 7910860 + 0 NA promoter-TSS (NM_030810) promoter-TSS (NM_030810) 23 NM_030810 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 21732 chr4 117796840 117796901 + 0 NA Intergenic Intergenic -237475 NM_004784 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 17107 chr2 218710788 218710868 + 0 NA promoter-TSS (NM_014640) promoter-TSS (NM_014640) -17 NM_014640 9654 Hs.471405 NM_014640 ENSG00000135912 TTLL4 - tubulin tyrosine ligase like 4 protein-coding 7247 chr12 68610696 68610800 + 0 NA promoter-TSS (NM_001251918) promoter-TSS (NM_001251918) -91 NM_001251922 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 20189 chr3 134201934 134202038 + 0 NA intron (NM_001005861, intron 6 of 14) intron (NM_001005861, intron 6 of 14) 48758 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor-like tyrosine kinase protein-coding 24278 chr6 28349929 28350033 + 0 NA promoter-TSS (NM_001242894) promoter-TSS (NM_001242894) 67 NM_001242894 80317 Hs.380930 NM_024493 ENSG00000189298 ZKSCAN3 ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47 zinc finger with KRAB and SCAN domains 3 protein-coding 413 chr1 26278497 26278615 + 0 NA 3' UTR (NM_001281517, exon 13 of 13) 3' UTR (NM_001281517, exon 13 of 13) -1166 NM_031286 83442 Hs.109051 NM_031286 ENSG00000142669 SH3BGRL3 HEL-S-297|SH3BP-1|TIP-B1 SH3 domain binding glutamate rich protein like 3 protein-coding 294 chr1 19949161 19949265 + 0 NA Intergenic LTR79|LTR|ERVL -25596 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 21649 chr4 103198313 103198417 + 0 NA promoter-TSS (NM_001813) promoter-TSS (NM_001813) 44 NM_001813 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 764 chr1 43582375 43582500 + 0 NA intron (NM_001329137, intron 9 of 34) intron (NM_001329137, intron 9 of 34) 51577 NM_130440 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase, receptor type F protein-coding 11289 chr16 47461192 47461260 + 0 NA promoter-TSS (NM_000293) promoter-TSS (NM_000293) 48 NM_001305002 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 29828 chr9 109316455 109316586 + 0 NA intron (NM_018424, intron 1 of 15) L3b|LINE|CR1 4444 NM_018424 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 28667 chr8 129708203 129708307 + 0 NA Intergenic Intergenic -28016 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 10327 chr15 67091339 67091481 + 0 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) 25553 NM_005902 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 9697 chr14 102125709 102125807 + 0 NA intron (NM_001017963, intron 1 of 11) intron (NM_001017963, intron 1 of 11) 13991 NM_001017963 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 16037 chr2 101380527 101380624 + 0 NA intron (NM_153836, intron 2 of 3) intron (NM_153836, intron 2 of 3) 6928 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 7634 chr12 109845296 109845400 + 0 NA Intergenic Intergenic -11941 NM_021625 59341 Hs.506713 NM_021625 ENSG00000111199 TRPV4 BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel subfamily V member 4 protein-coding 31203 chrX 155216262 155216449 + 0 NA promoter-TSS (NM_003372) promoter-TSS (NM_003372) -69 NM_001303545 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 25317 chr6 149746494 149746598 + 0 NA promoter-TSS (NM_198887) promoter-TSS (NM_198887) 26 NR_104456 348995 Hs.510375 NM_024647 ENSG00000120253 NUP43 bA350J20.1|p42 nucleoporin 43 protein-coding 8754 chr14 24188814 24188965 + 0 NA promoter-TSS (NM_024658) promoter-TSS (NM_024658) 29 NM_024658 79711 Hs.411865 NM_024658 ENSG00000196497 IPO4 Imp4 importin 4 protein-coding 17029 chr2 210171451 210171584 + 0 NA promoter-TSS (NM_001307976) promoter-TSS (NM_001307976) -147 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 2522 chr1 207282609 207282797 + 0 NA Intergenic Intergenic -38769 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 11754 chr16 83802332 83802474 + 0 NA intron (NR_120308, intron 2 of 2) intron (NR_120308, intron 2 of 2) 1573 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 26777 chr7 105830462 105830590 + 0 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 46059 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 20749 chr3 180250272 180250340 + 0 NA Intergenic L2c|LINE|L2 -163867 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 17102 chr2 218356777 218356845 + 0 NA promoter-TSS (NM_198559) promoter-TSS (NM_198559) -45 NM_198559 375307 Hs.645453 NM_198559 ENSG00000158428 CATIP C2orf62 ciliogenesis associated TTC17 interacting protein protein-coding 10083 chr15 50816298 50816435 + 0 NA Intergenic Intergenic -50653 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 18055 chr20 44151713 44151909 + 0 NA intron (NM_020433, intron 2 of 5) L2b|LINE|L2 35767 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 14040 chr19 8569467 8569546 + 0 NA intron (NM_012335, intron 1 of 27) intron (NM_012335, intron 1 of 27) 7941 NM_012335 4542 Hs.465818 NM_012335 ENSG00000142347 MYO1F - myosin IF protein-coding 5922 chr11 96207454 96207621 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -133901 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 13425 chr18 34707783 34707887 + 0 NA intron (NM_001128175, intron 2 of 11) intron (NM_001128175, intron 2 of 11) -2397 NM_032978 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 17022 chr2 209496206 209496318 + 0 NA intron (NM_001039538, intron 1 of 14) L2c|LINE|L2 72215 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 30753 chrX 54639796 54639953 + 0 NA Intergenic Intergenic 109663 NM_019067 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 10787 chr15 98166046 98166150 + 0 NA Intergenic Intergenic -77345 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 7777 chr12 121626448 121626521 + 0 NA promoter-TSS (NM_032790) promoter-TSS (NM_032790) -66 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 30441 chrX 1452961 1453059 + 0 NA promoter-TSS (NM_001173474) promoter-TSS (NM_001173474) -33 NM_004192 8623 Hs.533514 NM_004192 ENSG00000169093 ASMTL ASMTLX|ASMTLY|ASTML acetylserotonin O-methyltransferase-like protein-coding 24839 chr6 80541286 80541380 + 0 NA Intergenic Intergenic 434723 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 15723 chr2 68799801 68799946 + 0 NA intron (NM_014882, intron 3 of 9) intron (NM_014882, intron 3 of 9) 25072 NM_001166276 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 2583 chr1 209895825 209895929 + 0 NA Intergenic LTR39|LTR|ERV1 -42297 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 19232 chr3 18295267 18295424 + 0 NA Intergenic L1MA4A|LINE|L1 129992 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 9401 chr14 75822740 75822789 + 0 NA intron (NM_015072, intron 28 of 31) intron (NM_015072, intron 28 of 31) 159258 NM_003239 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 20976 chr3 192444588 192444750 + 0 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -35620 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 710 chr1 40899613 40899755 + 0 NA Intergenic Intergenic -37338 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 23277 chr5 136053659 136053763 + 0 NA intron (NM_000358, intron 8 of 16) intron (NM_000358, intron 8 of 16) 24816 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 27596 chr8 27340670 27340806 + 0 NA intron (NM_173175, intron 1 of 29) intron (NM_173175, intron 1 of 29) 15174 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 25436 chr6 160254951 160255055 + 0 NA intron (NM_003058, intron 2 of 10) intron (NM_003058, intron 2 of 10) 3928 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 7087 chr12 54279694 54279848 + 0 NA promoter-TSS (NM_002136) promoter-TSS (NM_002136) 360 NM_012117 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding 23810 chr5 178730650 178730806 + 0 NA promoter-TSS (NM_001324339) promoter-TSS (NM_001324339) -26 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 5105 chr11 32893003 32893076 + 0 NA promoter-TSS (NM_001076786) promoter-TSS (NM_001076786) -139 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 13227 chr18 3594069 3594153 + 0 NA promoter-TSS (NR_024101) promoter-TSS (NR_024101) -3 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 112 chr1 8097509 8097648 + 0 NA Intergenic Intergenic -71245 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 13603 chr18 54247218 54247324 + 0 NA Intergenic Intergenic -22208 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding 9423 chr14 77072148 77072252 + 0 NA intron (NR_110553, intron 1 of 2) intron (NR_110553, intron 1 of 2) 3991 NR_110553 102724190 Hs.562528 NR_110553 ENSG00000258819 LOC102724190 - uncharacterized LOC102724190 ncRNA 27256 chr7 155003289 155003521 + 0 NA promoter-TSS (NM_007349) promoter-TSS (NM_007349) -28 NR_028090 202781 Hs.193172 NR_028090 ENSG00000273344 PAXIP1-AS1 - PAXIP1 antisense RNA 1 (head to head) ncRNA 19873 chr3 111768583 111768687 + 0 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) 36155 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 23727 chr5 172689129 172689217 + 0 NA 3' UTR (NM_001308177, exon 4 of 4) 3' UTR (NM_001308177, exon 4 of 4) 27008 NR_049799 100847029 NR_049799 ENSG00000265160 MIR5003 - microRNA 5003 ncRNA 15793 chr2 72766127 72766231 + 0 NA intron (NR_135774, intron 1 of 19) L1MEg|LINE|L1 59863 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2 exocyst complex component 6B protein-coding 28212 chr8 94311104 94311178 + 0 NA Intergenic Intergenic -48822 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 15457 chr2 44126587 44126691 + 0 NA Intergenic Intergenic -42164 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 26289 chr7 54546847 54546951 + 0 NA intron (NR_133927, intron 1 of 3) CpG 735 NR_133927 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 16273 chr2 127294153 127294181 + 0 NA promoter-TSS (NM_000122) promoter-TSS (NM_000122) 9 NM_000122 2071 Hs.469872 NM_000122 ENSG00000163161 ERCC3 BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding 9935 chr15 40776847 40776965 + 0 NA intron (NM_018163, intron 4 of 10) intron (NM_018163, intron 4 of 10) 6945 NM_001130448 643338 Hs.631715 NM_001130448 ENSG00000188277 C15orf62 - chromosome 15 open reading frame 62 protein-coding 21525 chr4 83334881 83334985 + 0 NA promoter-TSS (NM_001098540) promoter-TSS (NM_001098540) -52 NM_001098540 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 24139 chr6 18347405 18347486 + 0 NA Intergenic AluJo|SINE|Alu -39905 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 20237 chr3 138118929 138119115 + 0 NA Intergenic Intergenic -3413 NM_173543 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2 DAZ interacting zinc finger protein 1 like protein-coding 12983 chr17 74944224 74944318 + 0 NA intron (NM_178233, intron 5 of 6) intron (NM_178233, intron 5 of 6) 8469 NM_001272005 347741 Hs.454407 NM_178233 ENSG00000182938 OTOP3 - otopetrin 3 protein-coding 16455 chr2 150133781 150133844 + 0 NA Intergenic Intergenic 353883 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 11500 chr16 67481216 67481228 + 0 NA promoter-TSS (NM_004691) promoter-TSS (NM_004691) -36 NM_004691 9114 Hs.106876 NM_004691 ENSG00000159720 ATP6V0D1 ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD ATPase H+ transporting V0 subunit d1 protein-coding 31193 chrX 154547419 154547523 + 0 NA promoter-TSS (NM_000402) promoter-TSS (NM_000402) 115 NM_001042351 2539 Hs.461047 NM_000402 ENSG00000160211 G6PD G6PD1 glucose-6-phosphate dehydrogenase protein-coding 6257 chr11 123616625 123616729 + 0 NA intron (NM_001330396, intron 17 of 19) Charlie29a|DNA|hAT-Charlie 37930 NM_018400 55800 Hs.4865 NM_018400 ENSG00000166257 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium voltage-gated channel beta subunit 3 protein-coding 25516 chr7 369234 369347 + 0 NA Intergenic CpG -10135 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 24413 chr6 33323052 33323203 + 0 NA promoter-TSS (NM_001141970).3 promoter-TSS (NM_001141970).3 -111 NM_001141970 1616 Hs.336916 NM_001350 ENSG00000204209 DAXX BING2|DAP6|EAP1 death domain associated protein protein-coding 2590 chr1 210311305 210311409 + 0 NA Intergenic Intergenic -16895 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 542 chr1 32108431 32108557 + 0 NA intron (NM_012316, intron 1 of 13) CpG 451 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 3750 chr10 61780008 61780157 + 0 NA Intergenic Intergenic 117121 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 C10orf107 bA63A2.1 chromosome 10 open reading frame 107 protein-coding 3114 chr1 244371928 244372035 + 0 NA intron (NM_001276349, intron 2 of 3) intron (NM_001276349, intron 2 of 3) 19346 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 31145 chrX 150694416 150694530 + 0 NA intron (NM_001306144, intron 1 of 15) intron (NM_001306144, intron 1 of 15) 1109 NM_001306145 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 7845 chr12 124609151 124609336 + 0 NA Intergenic Intergenic -41779 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 10161 chr15 57016060 57016124 + 0 NA intron (NM_001322164, intron 3 of 19) MER89-int|LTR|ERV1 96301 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20 transcription factor 12 protein-coding 14971 chr2 9644644 9644809 + 0 NA Intergenic Intergenic -13671 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 13787 chr18 75070928 75071032 + 0 NA Intergenic Intergenic 134533 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 13245 chr18 7567201 7567354 + 0 NA promoter-TSS (NM_002845) promoter-TSS (NM_002845) -39 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase, receptor type M protein-coding 9255 chr14 67674859 67674963 + 0 NA promoter-TSS (NM_006370) promoter-TSS (NM_006370) -26 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 5337 chr11 61297814 61297918 + 0 NA Intergenic Intergenic -2550 NM_152718 220001 Hs.60640 NM_152718 ENSG00000167992 VWCE URG11|VWC1 von Willebrand factor C and EGF domains protein-coding 26618 chr7 94510082 94510181 + 0 NA exon (NM_022900, exon 1 of 18) exon (NM_022900, exon 1 of 18) 273 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196 CAS1 domain containing 1 protein-coding 19227 chr3 17605119 17605223 + 0 NA intron (NM_014744, intron 2 of 21) intron (NM_014744, intron 2 of 21) 94849 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 9133 chr14 60724271 60724480 + 0 NA promoter-TSS (NM_017420) promoter-TSS (NM_017420) -241 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 7123 chr12 56152382 56152545 + 0 NA promoter-TSS (NM_001199629) promoter-TSS (NM_001199629) 43 NM_001199629 140465 Hs.632731 NM_002475 ENSG00000196465 MYL6B MLC1SA myosin light chain 6B protein-coding 10414 chr15 72237542 72237646 + 0 NA Intergenic Intergenic -5970 NM_182471 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 13772 chr18 73948545 73948649 + 0 NA Intergenic LTR46|LTR|ERV1 199167 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 170 chr1 11894025 11894163 + 0 NA Intergenic Intergenic -14060 NR_002754 26829 NR_002754 ENSG00000199347 RNU5E-1 RNU5E|U5E RNA, U5E small nuclear 1 snRNA 21699 chr4 110534038 110534187 + 0 NA intron (NM_001977, intron 11 of 19) intron (NM_001977, intron 11 of 19) 58039 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 4873 chr11 13668468 13668622 + 0 NA promoter-TSS (NM_032228) promoter-TSS (NM_032228) -114 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 30967 chrX 110002821 110002852 + 0 NA promoter-TSS (NM_032227) promoter-TSS (NM_032227) 201 NM_017698 84187 Hs.496572 NM_017698 ENSG00000157600 TMEM164 bB360B22.3 transmembrane protein 164 protein-coding 30319 chr9 133376076 133376199 + 0 NA promoter-TSS (NM_001280789) promoter-TSS (NM_001280789) 29 NM_001280793 6836 Hs.512465 NM_033161 ENSG00000148248 SURF4 ERV29 surfeit 4 protein-coding 5745 chr11 82864286 82864390 + 0 NA intron (NM_005040, intron 1 of 8) intron (NM_005040, intron 1 of 8) 36265 NM_199418 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 19683 chr3 84108817 84108834 + 0 NA Intergenic Intergenic 760750 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 6513 chr12 6371179 6371307 + 0 NA intron (NM_001038, intron 2 of 12) intron (NM_001038, intron 2 of 12) 3981 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 2116 chr1 177255550 177255639 + 0 NA intron (NM_021165, intron 2 of 7) intron (NM_021165, intron 2 of 7) 84206 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 24471 chr6 36682573 36682723 + 0 NA intron (NM_001220778, intron 1 of 2) intron (NM_001220778, intron 1 of 2) 3938 NM_001220778 1026 Hs.370771 NM_000389 ENSG00000124762 CDKN1A CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1 cyclin dependent kinase inhibitor 1A protein-coding 23247 chr5 134439390 134439491 + 0 NA Intergenic Intergenic -4393 NR_105044 102546229 NR_105044 LOC102546229 - uncharacterized LOC102546229 ncRNA 12334 chr17 32877116 32877264 + 0 NA promoter-TSS (NM_015194) promoter-TSS (NM_015194) -17 NM_015194 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 23632 chr5 159902897 159903001 + 0 NA Intergenic Intergenic -13784 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 9117 chr14 59361272 59361424 + 0 NA intron (NM_014992, intron 22 of 24) intron (NM_014992, intron 22 of 24) 97907 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 8298 chr13 52450622 52450770 + 0 NA promoter-TSS (NM_001282169) promoter-TSS (NM_001282169) -18 NM_016075 51028 Hs.109520 NM_016075 ENSG00000136100 VPS36 C13orf9|CGI-145|EAP45 vacuolar protein sorting 36 homolog protein-coding 6218 chr11 121292634 121292772 + 0 NA promoter-TSS (NM_006918) promoter-TSS (NM_006918) 24 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 27438 chr8 17246876 17246982 + 0 NA promoter-TSS (NM_013354) promoter-TSS (NM_013354) -20 NM_001322087 29883 Hs.587465 NM_013354 ENSG00000198791 CNOT7 CAF-1|CAF1|Caf1a|hCAF-1 CCR4-NOT transcription complex subunit 7 protein-coding 27403 chr8 12015156 12015309 + 0 NA Intergenic CpG -14480 NM_001302695 613211 Hs.98232 NM_001033019 ENSG00000205882 DEFB134 - defensin beta 134 protein-coding 25888 chr7 25094258 25094362 + 0 NA Intergenic Intergenic 31051 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 29605 chr9 95048467 95048571 + 0 NA intron (NM_001193329, intron 12 of 15) CpG -16831 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 8251 chr13 48769247 48769380 + 0 NA Intergenic Intergenic 115602 NM_001308470 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 18562 chr21 42468847 42468880 + 0 NA Intergenic L1MC5a|LINE|L1 27491 NM_001286506 89765 Hs.661069 NM_080860 ENSG00000160188 RSPH1 CT79|RSP44|RSPH10A|TSA2|TSGA2 radial spoke head 1 homolog protein-coding 10334 chr15 67150548 67150652 + 0 NA intron (NM_001145103, intron 1 of 8) intron (NM_001145103, intron 1 of 8) 12579 NM_001145103 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 17742 chr20 20603505 20603522 + 0 NA intron (NM_020343, intron 15 of 39) MLT1H|LTR|ERVL-MaLR 109110 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 18595 chr21 46286282 46286403 + 0 NA promoter-TSS (NM_003906) promoter-TSS (NM_003906) 12 NM_001314024 54059 Hs.474066 NM_058181 ENSG00000182362 YBEY C21orf57 ybeY metallopeptidase (putative) protein-coding 6997 chr12 50542485 50542674 + 0 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 37594 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 11615 chr16 73070617 73070721 + 0 NA Intergenic Intergenic -12034 NM_001164766 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 6744 chr12 25135875 25135993 + 0 NA intron (NM_018272, intron 9 of 15) L1PB1|LINE|L1 59228 NM_001082973 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility candidate 1 protein-coding 207 chr1 15409842 15409946 + 0 NA promoter-TSS (NM_024329) promoter-TSS (NM_024329) -1 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 18958 chr22 41544438 41544589 + 0 NA promoter-TSS (NM_001018050) promoter-TSS (NM_001018050) -24 NM_001282885 171568 Hs.712617 NM_138338 ENSG00000100413 POLR3H RPC22.9|RPC8 RNA polymerase III subunit H protein-coding 12734 chr17 56787072 56787196 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger 46761 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 28640 chr8 127596376 127596467 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -114282 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLo-1|LINC00860 cancer susceptibility candidate 8 (non-protein coding) ncRNA 18527 chr21 38277555 38277659 + 0 NA intron (NM_170737, intron 1 of 2) intron (NM_170737, intron 1 of 2) 5187 NM_170737 3772 Hs.411299 NM_002243 ENSG00000157551 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium voltage-gated channel subfamily J member 15 protein-coding 48 chr1 2652379 2652483 + 0 NA intron (NM_001242672, intron 4 of 6) intron (NM_001242672, intron 4 of 6) -19389 NM_033467 79258 Hs.591453 NM_033467 ENSG00000142606 MMEL1 MMEL2|NEP2|NEPII|NL1|NL2|SEP membrane metalloendopeptidase like 1 protein-coding 16122 chr2 110212434 110212585 + 0 NA non-coding (NR_027063, exon 7 of 8) non-coding (NR_027063, exon 7 of 8) -7447 NM_000272 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 12692 chr17 51120956 51120971 + 0 NA promoter-TSS (NM_001130527) promoter-TSS (NM_001130527) -98 NM_003971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 19464 chr3 48241007 48241140 + 0 NA promoter-TSS (NM_016089) promoter-TSS (NM_016089) -33 NM_016089 51385 Hs.172602 NM_016089 ENSG00000164048 ZNF589 SZF1 zinc finger protein 589 protein-coding 13833 chr19 344808 344912 + 0 NA promoter-TSS (NM_001346105) promoter-TSS (NM_001346105) -19 NM_001346105 54531 Hs.101891 NM_017550 ENSG00000105556 MIER2 KIAA1193|Mi-er2 MIER family member 2 protein-coding 28029 chr8 73561163 73561267 + 0 NA intron (NM_001164384, intron 10 of 10) intron (NM_001164384, intron 10 of 10) 141141 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 25649 chr7 7182402 7182531 + 0 NA promoter-TSS (NM_020156) promoter-TSS (NM_020156) -149 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 8607 chr13 110346722 110346884 + 0 NA intron (NM_001846, intron 3 of 47) intron (NM_001846, intron 3 of 47) 5845 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 27415 chr8 12837881 12837985 + 0 NA Intergenic MER66B|LTR|ERV1 -26532 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 1988 chr1 165456236 165456340 + 0 NA Intergenic L2a|LINE|L2 -10933 NM_006917 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 19897 chr3 112778443 112778547 + 0 NA Intergenic Intergenic -29176 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 26720 chr7 101085199 101085306 + 0 NA promoter-TSS (NM_030961) promoter-TSS (NM_030961) -187 NM_030961 81844 Hs.521092 NM_030961 ENSG00000169871 TRIM56 RNF109 tripartite motif containing 56 protein-coding 23385 chr5 141923699 141923837 + 0 NA promoter-TSS (NM_001142603) promoter-TSS (NM_001142603) -52 NM_001142603 9812 Hs.210532 NM_014773 ENSG00000081791 KIAA0141 DELE KIAA0141 protein-coding 29018 chr9 28915396 28915451 + 0 NA intron (NM_001258282, intron 2 of 6) MER5A|DNA|hAT-Charlie -26468 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 27398 chr8 11854028 11854178 + 0 NA intron (NM_001908, intron 1 of 9) intron (NM_001908, intron 1 of 9) 14047 NM_147783 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 25707 chr7 13822781 13822947 + 0 NA Intergenic MLT2A2|LTR|ERVL 163650 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 9955 chr15 41283834 41283949 + 0 NA promoter-TSS (NR_026757) promoter-TSS (NR_026757) -112 NR_026757 729082 Hs.380164 NR_026757 OIP5-AS1 cyrano OIP5 antisense RNA 1 ncRNA 4376 chr10 113045829 113045933 + 0 NA TTS (NR_132769) TTS (NR_132769) 526 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 18577 chr21 43712658 43712803 + 0 NA Intergenic LTR35A|LTR|ERV1 -6367 NM_003681 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 16096 chr2 108719331 108719487 + 0 NA promoter-TSS (NM_006267) promoter-TSS (NM_006267) -72 NM_006267 5903 Hs.199561 NM_006267 ENSG00000153201 RANBP2 ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 RAN binding protein 2 protein-coding 29861 chr9 110977355 110977446 + 0 NA intron (NM_057159, intron 1 of 4) intron (NM_057159, intron 1 of 4) 60685 NM_001401 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 20096 chr3 127590859 127591010 + 0 NA promoter-TSS (NM_001136053) promoter-TSS (NM_001136053) -175 NR_073377 131601 Hs.6418 NM_016372 ENSG00000163870 TPRA1 GPR175|TMEM227|TPRA40 transmembrane protein adipocyte associated 1 protein-coding 30383 chr9 137277603 137277707 + 0 NA promoter-TSS (NM_017723) promoter-TSS (NM_017723) -173 NM_017723 54863 Hs.495541 NM_017723 ENSG00000198113 TOR4A C9orf167 torsin family 4 member A protein-coding 11654 chr16 75433476 75433582 + 0 NA promoter-TSS (NM_006324) promoter-TSS (NM_006324) -40 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 14758 chr19 52942525 52942639 + 0 NA promoter-TSS (NR_037805) promoter-TSS (NR_037805) 12 NR_037805 399669 Hs.745445 NM_203307 ENSG00000213801 ZNF321P ZNF321 zinc finger protein 321, pseudogene pseudo 19869 chr3 111735513 111735668 + 0 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) 3110 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 9904 chr15 39213438 39213531 + 0 NA Intergenic Intergenic -37185 NR_144507 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 11964 chr17 4710386 4710390 + 0 NA promoter-TSS (NM_001257329) promoter-TSS (NM_001257329) -106 NM_004313 409 Hs.435811 NM_004313 ENSG00000141480 ARRB2 ARB2|ARR2|BARR2 arrestin beta 2 protein-coding 8011 chr13 27131257 27131361 + 0 NA intron (NR_046547, intron 1 of 2) MIRc|SINE|MIR 5776 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 1155 chr1 78340145 78340262 + 0 NA intron (NR_027310, intron 3 of 5) intron (NR_027310, intron 3 of 5) 110604 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 16245 chr2 121649544 121649657 + 0 NA promoter-TSS (NR_037858) promoter-TSS (NR_037858) -54 NR_037857 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 10844 chr16 636370 636500 + 0 NA promoter-TSS (NM_001040160) promoter-TSS (NM_001040160) -69 NM_001040160 84326 Hs.239500 NM_032366 ENSG00000130731 METTL26 C16orf13|JFP2 methyltransferase like 26 protein-coding 16474 chr2 152335057 152335150 + 0 NA promoter-TSS (NM_052905) promoter-TSS (NM_052905) -134 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 788 chr1 44775485 44775532 + 0 NA promoter-TSS (NR_000015) promoter-TSS (NR_000015) -66 NM_001012 6202 Hs.512675 NM_001012 ENSG00000142937 RPS8 S8 ribosomal protein S8 protein-coding 28811 chr8 143454724 143454857 + 0 NA intron (NM_015117, intron 9 of 11) Tigger7|DNA|TcMar-Tigger -24358 NM_201589 389692 Hs.521914 NM_201589 ENSG00000182759 MAFA RIPE3b1|hMafA MAF bZIP transcription factor A protein-coding 25671 chr7 10157121 10157234 + 0 NA Intergenic LTR39|LTR|ERV1 522907 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian clock 3 pseudogene pseudo 4797 chr11 9566151 9566258 + 0 NA Intergenic Intergenic -7477 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 31044 chrX 128383977 128384081 + 0 NA Intergenic L1PB2|LINE|L1 -331626 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 10751 chr15 94080492 94080646 + 0 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 27369 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 7530 chr12 101459868 101459972 + 0 NA Intergenic LTR33|LTR|ERVL -15501 NM_152323 121599 Hs.577097 NM_152323 ENSG00000166211 SPIC SPI-C Spi-C transcription factor protein-coding 24706 chr6 53326596 53326700 + 0 NA intron (NM_001242831, intron 1 of 2) intron (NM_001242831, intron 1 of 2) 10969 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 20991 chr3 193289470 193289574 + 0 NA intron (NM_198505, intron 26 of 29) MER58A|DNA|hAT-Charlie -17722 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 6630 chr12 12872399 12872485 + 0 NA Intergenic Intergenic -3035 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 11251 chr16 30950128 30950267 + 0 NA intron (NM_152288, intron 1 of 1) MIR3|SINE|MIR 1113 NM_152288 93129 Hs.745104 NM_152288 ENSG00000175938 ORAI3 TMEM142C ORAI calcium release-activated calcium modulator 3 protein-coding 17033 chr2 211132735 211132839 + 0 NA Intergenic L1MEg|LINE|L1 515216 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 25833 chr7 22357155 22357218 + 0 NA promoter-TSS (NM_012294) promoter-TSS (NM_012294) -272 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 20890 chr3 188061288 188061447 + 0 NA Intergenic Intergenic -84960 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 22281 chr5 16936198 16936302 + 0 NA promoter-TSS (NM_012334) promoter-TSS (NM_012334) 26 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 7891 chr12 130871707 130871764 + 0 NA promoter-TSS (NM_001300797) promoter-TSS (NM_001300797) -259 NM_001300796 5901 Hs.10842 NM_006325 ENSG00000132341 RAN ARA24|Gsp1|TC4 RAN, member RAS oncogene family protein-coding 1617 chr1 123720071 123720199 + 0 NA Intergenic ALR/Alpha|Satellite|centr 2201023 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 8634 chr13 112690003 112690157 + 0 NA promoter-TSS (NM_015205) promoter-TSS (NM_015205) -249 NM_032189 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 490 chr1 28882163 28882267 + 0 NA Intergenic Intergenic -4876 NM_001166005 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 25235 chr6 140462894 140463007 + 0 NA Intergenic Intergenic -220864 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 1843 chr1 156127240 156127344 + 0 NA intron (NM_001282624, intron 2 of 10) intron (NM_001282624, intron 2 of 10) 1175 NM_001257374 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 30841 chrX 76172988 76173092 + 0 NA 5' UTR (NM_001300888, exon 1 of 5) 5' UTR (NM_001300888, exon 1 of 5) 104 NM_016500 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 15515 chr2 47783096 47783188 + 0 NA promoter-TSS (NM_001281494) promoter-TSS (NM_001281494) 60 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 30907 chrX 104566363 104566467 + 0 NA promoter-TSS (NM_017416) promoter-TSS (NM_017416) 100 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 6502 chr12 6278597 6278750 + 0 NA Intergenic CpG -31763 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 18185 chr20 50439020 50439124 + 0 NA Intergenic MER102a|DNA|hAT-Charlie -71249 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 1294 chr1 91501029 91501178 + 0 NA promoter-TSS (NM_001134420) promoter-TSS (NM_001134420) -5 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 16925 chr2 201440258 201440441 + 0 NA intron (NM_015049, intron 1 of 15) Tigger15a|DNA|TcMar-Tigger 11247 NM_015049 66008 Hs.152774 NM_015049 ENSG00000115993 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking kinesin protein 2 protein-coding 12137 chr17 16353628 16353648 + 0 NA promoter-TSS (NM_181716) promoter-TSS (NM_181716) -140 NM_181716 201161 Hs.433422 NM_181716 ENSG00000166582 CENPV 3110013H01Rik|CENP-V|PRR6|p30 centromere protein V protein-coding 29690 chr9 99433681 99433827 + 0 NA Intergenic Intergenic -58497 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 21402 chr4 57151592 57151696 + 0 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -41259 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 16834 chr2 190880660 190880810 + 0 NA promoter-TSS (NM_014905) promoter-TSS (NM_014905) -86 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 9438 chr14 77707994 77708098 + 0 NA promoter-TSS (NM_006020) promoter-TSS (NM_006020) -25 NM_001267863 81892 Hs.655105 NM_031210 ENSG00000119705 SLIRP C14orf156|DC50|PD04872 SRA stem-loop interacting RNA binding protein protein-coding 7894 chr12 131710650 131710742 + 0 NA promoter-TSS (NM_001261411) promoter-TSS (NM_001261411) -391 NM_004592 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP homolog protein-coding 7111 chr12 55956194 55956328 + 0 NA intron (NM_006928, intron 7 of 11) intron (NM_006928, intron 7 of 11) 9801 NM_001200054 6490 Hs.95972 NM_006928 ENSG00000185664 PMEL D12S53E|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100 premelanosome protein protein-coding 4640 chr10 132591427 132591528 + 0 NA intron (NM_005539, intron 1 of 15) L1M5|LINE|L1 53698 NM_005539 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 782 chr1 44568246 44568350 + 0 NA intron (NM_001319957, intron 1 of 13) L2a|LINE|L2 22805 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 5225 chr11 45847140 45847244 + 0 NA promoter-TSS (NM_001127457) promoter-TSS (NM_001127457) 74 NM_001127457 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian clock 2 protein-coding 30797 chrX 68999512 68999616 + 0 NA Intergenic Intergenic 165958 NM_145119 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 26045 chr7 35707586 35707690 + 0 NA Intergenic L3|LINE|CR1 -8799 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 24856 chr6 82875903 82876040 + 0 NA Intergenic Intergenic 189870 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 15230 chr2 27322952 27323079 + 0 NA promoter-TSS (NM_002437) promoter-TSS (NM_002437) 87 NM_002437 4358 Hs.75659 NM_002437 ENSG00000115204 MPV17 MTDPS6|SYM1 MPV17, mitochondrial inner membrane protein protein-coding 13069 chr17 78214142 78214246 + 0 NA promoter-TSS (NM_001168) promoter-TSS (NM_001168) -2 NM_001012271 332 Hs.744872 NM_001168 ENSG00000089685 BIRC5 API4|EPR-1 baculoviral IAP repeat containing 5 protein-coding 10544 chr15 80805186 80805290 + 0 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) 25895 NM_001293304 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronan binding protein protein-coding 6510 chr12 6363457 6363486 + 0 NA exon (NM_001159576, exon 2 of 12) exon (NM_001159576, exon 2 of 12) 11753 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 781 chr1 44532226 44532231 + 0 NA intron (NM_001319957, intron 1 of 13) L3|LINE|CR1 -13265 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 28785 chr8 141893757 141893861 + 0 NA Intergenic Intergenic -107496 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 19544 chr3 52278677 52278721 + 0 NA promoter-TSS (NM_025222) promoter-TSS (NM_025222) -56 NM_025222 80335 Hs.194110 NM_025222 ENSG00000164091 WDR82 MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A WD repeat domain 82 protein-coding 9323 chr14 71372086 71372271 + 0 NA Intergenic Intergenic -26159 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 22409 chr5 39196736 39196844 + 0 NA intron (NM_001243093, intron 2 of 18) MIRb|SINE|MIR 22788 NM_199335 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 18362 chr20 60243308 60243412 + 0 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -65114 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 10713 chr15 90935143 90935247 + 0 NA 5' UTR (NM_001039675, exon 4 of 23) 5' UTR (NM_001039675, exon 4 of 23) 309 NM_018671 55898 Hs.389461 NM_017979 ENSG00000140553 UNC45A GC-UNC45|GCUNC-45|GCUNC45|IRO039700|SMAP-1|SMAP1|UNC-45A unc-45 myosin chaperone A protein-coding 30735 chrX 53082261 53082414 + 0 NA promoter-TSS (NM_022117) promoter-TSS (NM_022117) -23 NM_022117 64061 Hs.136164 NM_022117 ENSG00000184205 TSPYL2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX TSPY like 2 protein-coding 5748 chr11 82980427 82980578 + 0 NA 3' UTR (NM_001286059, exon 5 of 5) 3' UTR (NM_001286059, exon 5 of 5) 54067 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 25278 chr6 145735192 145735263 + 0 NA exon (NM_005670, exon 1 of 4) exon (NM_005670, exon 1 of 4) 358 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 11272 chr16 31713138 31713242 + 0 NA promoter-TSS (NM_001130913) promoter-TSS (NM_001130913) -39 NM_001130913 124411 Hs.528826 NM_001004300 ENSG00000197302 ZNF720 - zinc finger protein 720 protein-coding 12115 chr17 12731250 12731354 + 0 NA intron (NM_153604, intron 5 of 12) intron (NM_153604, intron 5 of 12) -25167 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 9867 chr15 35546078 35546117 + 0 NA promoter-TSS (NR_038251) promoter-TSS (NR_038251) -98 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-AS1 ATPBD4-AS1 DPH6 antisense RNA 1 (head to head) ncRNA 26197 chr7 46205571 46205712 + 0 NA Intergenic Intergenic -284369 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 5327 chr11 60842004 60842072 + 0 NA promoter-TSS (NM_024098) promoter-TSS (NM_024098) 82 NM_024098 79080 Hs.4253 NM_024098 ENSG00000110104 CCDC86 - coiled-coil domain containing 86 protein-coding 19818 chr3 107240585 107240738 + 0 NA promoter-TSS (NR_028303) promoter-TSS (NR_028303) -23 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 24367 chr6 31620393 31620550 + 0 NA promoter-TSS (NM_004638).2 promoter-TSS (NM_004638).2 -202 NM_004638 7916 Hs.123239 NM_004638 ENSG00000204469 PRRC2A BAT2|D6S51|D6S51E|G2 proline rich coiled-coil 2A protein-coding 872 chr1 52056114 52056249 + 0 NA promoter-TSS (NM_015913) promoter-TSS (NM_015913) -4 NM_001136497 91408 Hs.429839 NM_152265 ENSG00000134717 BTF3L4 - basic transcription factor 3 like 4 protein-coding 15014 chr2 11532560 11532705 + 0 NA Intergenic Intergenic -1484 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulation by estrogen in breast cancer 1 protein-coding 17219 chr2 227406359 227406463 + 0 NA Intergenic Intergenic -27105 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 8801 chr14 31902131 31902303 + 0 NA Intergenic L2a|LINE|L2 174482 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 25991 chr7 32335196 32335300 + 0 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) -35844 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1146 chr1 77889854 77889952 + 0 NA promoter-TSS (NR_103535) promoter-TSS (NR_103535) -364 NR_103535 374987 Hs.632414 NM_199343 ENSG00000235927 NEXN-AS1 C1orf118 NEXN antisense RNA 1 ncRNA 21171 chr4 10007053 10007169 + 0 NA intron (NM_001001290, intron 3 of 12) MER68|LTR|ERVL 14379 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 89 chr1 6602760 6602779 + 0 NA exon (NM_001324309, exon 1 of 4) exon (NM_001324309, exon 1 of 4) 129 NM_001324309 9903 Hs.7764 NM_014851 ENSG00000162413 KLHL21 - kelch like family member 21 protein-coding 25417 chr6 158644931 158644943 + 0 NA promoter-TSS (NM_001291602) promoter-TSS (NM_001291602) -151 NM_001291602 6993 Hs.445999 NM_006519 ENSG00000146425 DYNLT1 CW-1|TCTEL1|tctex-1 dynein light chain Tctex-type 1 protein-coding 8058 chr13 30617710 30617936 + 0 NA promoter-TSS (NM_001313893) promoter-TSS (NM_001313893) 130 NM_005800 10208 Hs.533831 NM_005800 ENSG00000132952 USPL1 C13orf22|D13S106E|bA121O19.1 ubiquitin specific peptidase like 1 protein-coding 25021 chr6 111589536 111589640 + 0 NA intron (NM_147200, intron 3 of 9) intron (NM_147200, intron 3 of 9) 16363 NM_147200 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 20196 chr3 134351017 134351166 + 0 NA Intergenic Intergenic 16771 NR_106885 102466744 NR_106885 ENSG00000277723 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 4342 chr10 110408396 110408558 + 0 NA Intergenic Intergenic -89390 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 11730 chr16 81605066 81605170 + 0 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -6230 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 10229 chr15 60918706 60918855 + 0 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 237211 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 10026 chr15 45454957 45455061 + 0 NA Intergenic LTR101_Mam|LTR|ERVL 21959 NR_030599 100126311 NR_030599 ENSG00000166920 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 19328 chr3 33895142 33895180 + 0 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 96590 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 30415 chrUn_GL000219v1 99670 99822 + 0 NA promoter-TSS (NR_027436) promoter-TSS (NR_027436) -104 NR_027436 283788 Hs.657131 NR_027436 LOC283788 - FSHD region gene 1 pseudogene pseudo 18348 chr20 59515802 59515906 + 0 NA Intergenic Intergenic -61655 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 18007 chr20 40506706 40506893 + 0 NA Intergenic Intergenic 182441 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 13319 chr18 23282148 23282248 + 0 NA Intergenic Intergenic 126373 NM_138375 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 12206 chr17 20155819 20155970 + 0 NA promoter-TSS (NM_001033554) promoter-TSS (NM_001033554) -100 NM_001033554 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 25590 chr7 4974267 4974276 + 0 NA intron (NR_023385, intron 1 of 4) CpG 286 NR_023385 441191 Hs.520636 NR_015449 ENSG00000196204 RNF216P1 RNF216L|hCG2040556 ring finger protein 216 pseudogene 1 pseudo 12229 chr17 26594826 26594980 + 0 NA Intergenic ALR/Alpha|Satellite|centr 494338 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 8661 chr14 20343249 20343371 + 0 NA promoter-TSS (NM_001042618) promoter-TSS (NM_001042618) 101 NR_002312 85495 Hs.613102 NR_002312 ENSG00000277209 RPPH1 H1RNA|RPPH1-1 ribonuclease P RNA component H1 ncRNA 18491 chr21 33641698 33641762 + 0 NA promoter-TSS (NM_001331011) promoter-TSS (NM_001331011) 124 NM_145858 9946 Hs.352671 NM_145311 ENSG00000205758 CRYZL1 4P11|QOH-1 crystallin zeta like 1 protein-coding 3960 chr10 78303233 78303377 + 0 NA Intergenic CpG 35977 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 27770 chr8 47513838 47514019 + 0 NA intron (NR_104581, intron 6 of 16) intron (NR_104581, intron 6 of 16) 224236 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 11916 chr17 2359628 2359744 + 0 NA intron (NM_014853, intron 2 of 23) intron (NM_014853, intron 2 of 23) 22172 NM_001098509 9905 Hs.513861 NM_014853 ENSG00000141258 SGSM2 RUTBC1 small G protein signaling modulator 2 protein-coding 22289 chr5 17203454 17203586 + 0 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -13303 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 13971 chr19 5173305 5173409 + 0 NA Intergenic Charlie25|DNA|hAT-Charlie 167446 NM_002850 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase, receptor type S protein-coding 10550 chr15 81000857 81000961 + 0 NA promoter-TSS (NM_022566) promoter-TSS (NM_022566) -45 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 MESDC1 - mesoderm development candidate 1 protein-coding 7174 chr12 57936116 57936305 + 0 NA promoter-TSS (NR_038269) promoter-TSS (NR_038269) -46 NR_038269 100506844 Hs.90286 NR_038269 LOC100506844 - uncharacterized LOC100506844 ncRNA 1675 chr1 150282312 150282457 + 0 NA promoter-TSS (NM_001300838) promoter-TSS (NM_001300838) -149 NM_144697 148523 Hs.54680 NM_144697 ENSG00000159208 CIART C1orf51|CHRONO|GM129 circadian associated repressor of transcription protein-coding 649 chr1 37794054 37794077 + 0 NA promoter-TSS (NM_001031740) promoter-TSS (NM_001031740) -37 NM_001031740 149175 Hs.534562 NM_152496 ENSG00000185090 MANEAL - mannosidase endo-alpha like protein-coding 11595 chr16 71708028 71708065 + 0 NA intron (NM_015020, intron 2 of 18) AluSg4|SINE|Alu 7794 NM_001289003 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 22568 chr5 57173966 57174001 + 0 NA promoter-TSS (NM_001203246) promoter-TSS (NM_001203246) 35 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 3903 chr10 73889128 73889272 + 0 NA Intergenic Intergenic -14609 NM_172169 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 1318 chr1 93693035 93693139 + 0 NA intron (NM_001261408, intron 3 of 13) MER5A1|DNA|hAT-Charlie -11249 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 18878 chr22 37887777 37887958 + 0 NA intron (NM_001242923, intron 10 of 10) intron (NM_001242923, intron 10 of 10) -18281 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 29821 chr9 109098544 109098648 + 0 NA intron (NM_032012, intron 3 of 17) intron (NM_032012, intron 3 of 17) 21349 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 13383 chr18 31102369 31102473 + 0 NA promoter-TSS (NM_004949) promoter-TSS (NM_004949) 11 NM_024422 1824 Hs.95612 NM_004949 ENSG00000134755 DSC2 ARVD11|CDHF2|DG2|DGII/III|DSC3 desmocollin 2 protein-coding 16623 chr2 169038511 169038632 + 0 NA Intergenic Intergenic -7248 NM_003742 8647 Hs.658439 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 30802 chrX 69222131 69222337 + 0 NA Intergenic Intergenic 42677 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 8847 chr14 34629715 34629743 + 0 NA intron (NM_021249, intron 1 of 12) CpG 380 NM_021249 58533 Hs.276523 NM_021249 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 14010 chr19 6767423 6767527 + 0 NA promoter-TSS (NM_005490) promoter-TSS (NM_005490) 37 NM_005490 10045 Hs.439645 NM_005490 ENSG00000125731 SH2D3A NSP1 SH2 domain containing 3A protein-coding 17350 chr2 237673215 237673319 + 0 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) -18897 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 10593 chr15 84142941 84143111 + 0 NA Intergenic Intergenic 27958 NR_033787 440299 Hs.454641 NR_033787 DNM1P41 DNM1DN11-6|DNM1DN11.6|DNM1DN11@ dynamin 1 pseudogene 41 pseudo 27410 chr8 12665583 12665714 + 0 NA promoter-TSS (NR_047662) promoter-TSS (NR_047662) -37 NR_047662 729732 Hs.322761 NR_047662 ENSG00000283674 LOC729732 - uncharacterized LOC729732 ncRNA 19702 chr3 93979975 93980122 + 0 NA promoter-TSS (NR_135621) promoter-TSS (NR_135621) -91 NM_001321328 200894 Hs.533086 NM_144996 ENSG00000169379 ARL13B ARL2L1|JBTS8 ADP ribosylation factor like GTPase 13B protein-coding 19145 chr3 9916925 9917094 + 0 NA promoter-TSS (NM_001203263) promoter-TSS (NM_001203263) -65 NR_037807 84818 Hs.129959 NM_032732 ENSG00000163702 IL17RC CANDF9|IL17-RL|IL17RL interleukin 17 receptor C protein-coding 16804 chr2 188629438 188629542 + 0 NA Intergenic Intergenic 160614 NM_052952 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 protein-coding 13038 chr17 76453175 76453328 + 0 NA promoter-TSS (NM_022066) promoter-TSS (NM_022066) -45 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 184 chr1 12573898 12574002 + 0 NA intron (NM_001324370, intron 4 of 5) intron (NM_001324370, intron 4 of 5) 5073 NR_106788 102466722 NR_106788 ENSG00000276830 MIR6730 hsa-mir-6730 microRNA 6730 ncRNA 19065 chr22_KI270733v1_random 136255 136392 + 0 NA TTS (NR_046235).2 TTS (NR_046235).2 6119 NR_003287 100008589 NR_003287 RNA28S5 RN28S1 RNA, 28S ribosomal 5 rRNA 30283 chr9 131714176 131714286 + 0 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) -4389 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 10597 chr15 84631340 84631486 + 0 NA promoter-TSS (NR_003654) promoter-TSS (NR_003654) -47 NR_003654 54581 Hs.658114 NM_022050 SCAND2P SCAND2 SCAN domain containing 2 pseudogene pseudo 29745 chr9 105609094 105609240 + 0 NA intron (NM_001079802, intron 7 of 10) intron (NM_001079802, intron 7 of 10) 51037 NM_001198963 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 3738 chr10 60466879 60466983 + 0 NA intron (NM_001204403, intron 2 of 43) L1MB7|LINE|L1 -76947 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 30643 chrX 44223346 44223450 + 0 NA intron (NM_025184, intron 11 of 14) MLT1N2|LTR|ERVL-MaLR 120279 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 23432 chr5 145975520 145975624 + 0 NA intron (NM_152550, intron 2 of 9) intron (NM_152550, intron 2 of 9) 39009 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 9286 chr14 69191428 69191616 + 0 NA promoter-TSS (NM_001193360) promoter-TSS (NM_001193360) 45 NM_001193361 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 2673 chr1 214525769 214525807 + 0 NA intron (NM_005401, intron 1 of 18) MIRb|SINE|MIR 25893 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 12821 chr17 62779136 62779280 + 0 NA intron (NM_001288780, intron 4 of 10) intron (NM_001288780, intron 4 of 10) 27445 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 181 chr1 12478308 12478318 + 0 NA intron (NM_018156, intron 66 of 68) intron (NM_018156, intron 66 of 68) -28933 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 412 chr1 26276388 26276492 + 0 NA intron (NM_001319944, intron 12 of 13) intron (NM_001319944, intron 12 of 13) -3282 NM_031286 83442 Hs.109051 NM_031286 ENSG00000142669 SH3BGRL3 HEL-S-297|SH3BP-1|TIP-B1 SH3 domain binding glutamate rich protein like 3 protein-coding 6239 chr11 122655608 122655757 + 0 NA promoter-TSS (NM_032873) promoter-TSS (NM_032873) -8 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 15790 chr2 72150401 72150523 + 0 NA Intergenic Intergenic -2600 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 9293 chr14 69651049 69651057 + 0 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 39460 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 18421 chr21 14534190 14534294 + 0 NA intron (NM_001286523, intron 1 of 8) intron (NM_001286523, intron 1 of 8) 12118 NM_001286523 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 29763 chr9 106880963 106881067 + 0 NA intron (NM_001347997, intron 1 of 12) intron (NM_001347997, intron 1 of 12) 17918 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 15918 chr2 85889055 85889205 + 0 NA promoter-TSS (NR_110569) promoter-TSS (NR_110569) -96 NM_003896 8869 Hs.415117 NM_003896 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|SPDRS|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 4933 chr11 16924151 16924285 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 90198 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 29066 chr9 35079971 35080070 + 0 NA promoter-TSS (NM_004629) promoter-TSS (NM_004629) -4 NM_004629 2189 Hs.591084 NM_004629 ENSG00000221829 FANCG FAG|XRCC9 Fanconi anemia complementation group G protein-coding 18898 chr22 38700964 38701115 + 0 NA promoter-TSS (NM_014876) promoter-TSS (NM_014876) -585 NM_014876 9929 Hs.3094 NM_014876 ENSG00000100221 JOSD1 dJ508I15.2 Josephin domain containing 1 protein-coding 2893 chr1 228229038 228229142 + 0 NA intron (NM_001271223, intron 10 of 115) L1MB7|LINE|L1 -15426 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 C1orf145 - chromosome 1 open reading frame 145 ncRNA 2062 chr1 170532020 170532169 + 0 NA promoter-TSS (NM_001146039) promoter-TSS (NM_001146039) -28 NR_027397 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 15242 chr2 27706318 27706457 + 0 NA non-coding (NR_135200, exon 2 of 2) non-coding (NR_135200, exon 2 of 2) 9345 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 3935 chr10 75417774 75417860 + 0 NA Intergenic Intergenic 8660 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 30254 chr9 130053831 130053979 + 0 NA 5' UTR (NM_001287346, exon 1 of 17) 5' UTR (NM_001287346, exon 1 of 17) 199 NM_001136558 57720 Hs.512461 NM_020960 ENSG00000148358 GPR107 GCDRP|LUSTR1|bA138E2.2 G protein-coupled receptor 107 protein-coding 28448 chr8 115333886 115334057 + 0 NA Intergenic LTR16E1|LTR|ERVL 334041 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 2886 chr1 228087969 228088073 + 0 NA intron (NM_001024227, intron 1 of 4) intron (NM_001024227, intron 1 of 4) 4871 NM_001024228 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 13593 chr18 51615387 51615510 + 0 NA Intergenic Intergenic 223406 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 2543 chr1 208244330 208244434 + 0 NA promoter-TSS (NM_025179) promoter-TSS (NM_025179) -62 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 20022 chr3 121974776 121974880 + 0 NA Intergenic LTR8B|LTR|ERV1 47452 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 5650 chr11 73598522 73598540 + 0 NA promoter-TSS (NM_001286050) promoter-TSS (NM_001286050) -342 NM_001286050 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 5224 chr11 45843319 45843377 + 0 NA Intergenic Intergenic -3770 NM_001127457 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian clock 2 protein-coding 13377 chr18 29226351 29226455 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -1048957 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 23227 chr5 133245654 133245758 + 0 NA intron (NM_015082, intron 7 of 15) intron (NM_015082, intron 7 of 15) 182000 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 20661 chr3 172477367 172477395 + 0 NA Intergenic Intergenic -28925 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 12909 chr17 69539953 69540057 + 0 NA intron (NM_001330450, intron 11 of 11) intron (NM_001330450, intron 11 of 11) 37783 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 17140 chr2 220620075 220620170 + 0 NA Intergenic Intergenic -713557 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 7212 chr12 63779799 63779955 + 0 NA promoter-TSS (NM_014254) promoter-TSS (NM_014254) 74 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 TMEM5 HP10481|MDDGA10 transmembrane protein 5 protein-coding 24920 chr6 90411591 90411671 + 0 NA Intergenic Intergenic 98889 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 4287 chr10 103800944 103801097 + 0 NA intron (NM_014631, intron 2 of 13) intron (NM_014631, intron 2 of 13) 54241 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 29984 chr9 116572238 116572342 + 0 NA intron (NM_014010, intron 18 of 21) intron (NM_014010, intron 18 of 21) 68007 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 24022 chr6 10451911 10452084 + 0 NA non-coding (NR_132993, exon 2 of 4) non-coding (NR_132993, exon 2 of 4) 12280 NR_049872 100846998 NR_049872 ENSG00000263705 MIR5689 - microRNA 5689 ncRNA 30056 chr9 122264674 122264833 + 0 NA non-coding (NR_027125, exon 1 of 7) non-coding (NR_027125, exon 1 of 7) 111 NR_027126 92400 Hs.415842 NM_033117 ENSG00000119446 RBM18 - RNA binding motif protein 18 protein-coding 5362 chr11 62380859 62380991 + 0 NA intron (NM_025080, intron 4 of 6) HERVK-int|LTR|ERVK -38110 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 10885 chr16 2251578 2251723 + 0 NA promoter-TSS (NM_001178029) promoter-TSS (NM_001178029) -49 NM_001178029 1632 Hs.403436 NM_001919 ENSG00000167969 ECI1 DCI enoyl-CoA delta isomerase 1 protein-coding 1867 chr1 157132715 157132904 + 0 NA TTS (NM_005240) TTS (NM_005240) 4447 NR_001560 360155 Hs.491808 NR_001560 ENSG00000235700 CYCSP52 HC6|HCP2 cytochrome c, somatic pseudogene 52 pseudo 17684 chr20 17569262 17569324 + 0 NA promoter-TSS (NM_001278608) promoter-TSS (NM_001278608) -73 NM_001278608 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 11552 chr16 69132518 69132642 + 0 NA promoter-TSS (NM_001040146) promoter-TSS (NM_001040146) 10 NM_001039690 54921 Hs.85962 NM_017804 ENSG00000168802 CHTF8 CTF8|DERPC chromosome transmission fidelity factor 8 protein-coding 4742 chr11 6320484 6320533 + 0 NA promoter-TSS (NM_145040) promoter-TSS (NM_145040) 2 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 3969 chr10 79184312 79184416 + 0 NA intron (NM_020338, intron 4 of 24) MIRb|SINE|MIR 115329 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger MIZ-type containing 1 protein-coding 20951 chr3 190513689 190513781 + 0 NA promoter-TSS (NM_001167930) promoter-TSS (NM_001167930) -316 NM_001167928 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 7957 chr13 21670956 21671089 + 0 NA promoter-TSS (NM_002010) promoter-TSS (NM_002010) -54 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 29114 chr9 62802593 62802728 + 0 NA intron (NR_121647, intron 1 of 4) CpG 1195 NR_121647 103352539 Hs.351215 NR_121647 ENSG00000238113 LINC01410 - long intergenic non-protein coding RNA 1410 ncRNA 25273 chr6 145016027 145016131 + 0 NA Intergenic Intergenic 610424 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 22561 chr5 56815310 56815485 + 0 NA 5' UTR (NM_005921, exon 1 of 20) 5' UTR (NM_005921, exon 1 of 20) 324 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 15772 chr2 70596388 70596508 + 0 NA Intergenic Intergenic -42433 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 2505 chr1 206525199 206525248 + 0 NA intron (NM_182664, intron 1 of 4) intron (NM_182664, intron 1 of 4) 17693 NM_182663 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 13571 chr18 50307783 50307887 + 0 NA Intergenic Intergenic -19513 NM_014593 30827 Hs.180933 NM_014593 ENSG00000154832 CXXC1 2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP CXXC finger protein 1 protein-coding 22248 chr5 14264682 14264832 + 0 NA intron (NR_134469, intron 1 of 56) intron (NR_134469, intron 1 of 56) 121055 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 8441 chr13 91347624 91347740 + 0 NA promoter-TSS (NR_027349) promoter-TSS (NR_027349) -138 NR_027350 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 2936 chr1 230978875 230979025 + 0 NA promoter-TSS (NM_001122835) promoter-TSS (NM_001122835) -78 NM_024525 79573 Hs.424788 NM_024525 ENSG00000143643 TTC13 - tetratricopeptide repeat domain 13 protein-coding 9110 chr14 59189981 59190196 + 0 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) 1425 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 26307 chr7 55133090 55133199 + 0 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 23327 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 23665 chr5 167730266 167730370 + 0 NA intron (NM_001122679, intron 2 of 28) intron (NM_001122679, intron 2 of 28) -24618 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 8364 chr13 75636169 75636239 + 0 NA promoter-TSS (NR_120410) promoter-TSS (NR_120410) -84 NM_001306080 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 26639 chr7 96322056 96322212 + 0 NA promoter-TSS (NM_001160210) promoter-TSS (NM_001160210) 13 NM_014251 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 22536 chr5 54742564 54742578 + 0 NA intron (NR_104658, intron 1 of 2) LTR16A2|LTR|ERVL 1687 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 1289 chr1 90851547 90851651 + 0 NA promoter-TSS (NR_135038) promoter-TSS (NR_135038) 39 NR_135038 105378853 Hs.546492 NR_135038 ENSG00000233593 LOC105378853 - uncharacterized LOC105378853 ncRNA 8280 chr13 50731482 50731622 + 0 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -76303 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000237152 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 21044 chr3 196127398 196127416 + 0 NA Intergenic Intergenic -15229 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 6113 chr11 114279992 114280171 + 0 NA Intergenic L2a|LINE|L2 -15732 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 841 chr1 47561605 47561709 + 0 NA Intergenic L2b|LINE|L2 -124340 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 16149 chr2 112584546 112584567 + 0 NA promoter-TSS (NM_001304354) promoter-TSS (NM_001304354) 119 NM_001304353 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|MIC14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 29764 chr9 106892784 106892929 + 0 NA intron (NM_001347997, intron 1 of 12) intron (NM_001347997, intron 1 of 12) 29759 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 8708 chr14 22839275 22839379 + 0 NA intron (NM_004995, intron 1 of 9) intron (NM_004995, intron 1 of 9) 2794 NM_004995 4323 Hs.2399 NM_004995 ENSG00000157227 MMP14 MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS matrix metallopeptidase 14 protein-coding 20163 chr3 132134698 132134802 + 0 NA Intergenic L2b|LINE|L2 -95144 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 5548 chr11 67241175 67241307 + 0 NA intron (NM_001256405, intron 1 of 9) intron (NM_001256405, intron 1 of 9) 1206 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 1751 chr1 152941472 152941623 + 0 NA Intergenic Intergenic -29106 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 11301 chr16 48353758 48353862 + 0 NA 3' UTR (NM_001300948, exon 14 of 14) 3' UTR (NM_001300948, exon 14 of 14) -1875 NR_040677 83752 Hs.295923 NM_031490 ENSG00000102910 LONP2 LONP|LONPL|PLON|PSLON lon peptidase 2, peroxisomal protein-coding 8510 chr13 100515010 100515114 + 0 NA intron (NM_001178004, intron 21 of 22) intron (NM_001178004, intron 21 of 22) 18740 NM_033110 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 19121 chr3 8658421 8658564 + 0 NA Intergenic Intergenic -6414 NM_001256749 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 10833 chr15 101724487 101724591 + 0 NA promoter-TSS (NM_152334) promoter-TSS (NM_152334) -97 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 2121 chr1 177586534 177586638 + 0 NA Intergenic L2c|LINE|L2 -113938 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 474 chr1 28259346 28259575 + 0 NA promoter-TSS (NM_031459) promoter-TSS (NM_031459) 8 NM_031459 83667 Hs.469543 NM_031459 ENSG00000130766 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 27115 chr7 140403890 140403994 + 0 NA promoter-TSS (NM_001008749) promoter-TSS (NM_001008749) -101 NM_001008749 401409 Hs.583545 NM_001008749 ENSG00000146955 RAB19 RAB19B RAB19, member RAS oncogene family protein-coding 26532 chr7 85695784 85695888 + 0 NA Intergenic Arthur1B|DNA|hAT-Tip100 274714 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 13641 chr18 58177405 58177519 + 0 NA intron (NM_001144964, intron 2 of 30) intron (NM_001144964, intron 2 of 30) -17928 NM_001144970 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 29370 chr9 82410406 82410510 + 0 NA Intergenic L2c|LINE|L2 421686 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 27335 chr8 6852794 6852911 + 0 NA Intergenic Intergenic -17208 NM_207411 389610 Hs.558840 NM_207411 ENSG00000275591 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK related 5 protein-coding 25287 chr6 146543577 146543792 + 0 NA promoter-TSS (NM_006834) promoter-TSS (NM_006834) -8 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 29414 chr9 84996197 84996251 + 0 NA intron (NM_001018064, intron 15 of 16) intron (NM_001018064, intron 15 of 16) 325847 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 10646 chr15 88621168 88621279 + 0 NA promoter-TSS (NM_022767) promoter-TSS (NM_022767) -73 NM_022767 64782 Hs.436102 NM_022767 ENSG00000181026 AEN ISG20L1|pp12744 apoptosis enhancing nuclease protein-coding 9497 chr14 86799350 86799474 + 0 NA Intergenic MER20|DNA|hAT-Charlie -106366 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 4058 chr10 90484703 90484787 + 0 NA intron (NR_110657, intron 2 of 6) L1PBa|LINE|L1 56060 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LOC101926942 - uncharacterized LOC101926942 ncRNA 2953 chr1 232529878 232530020 + 0 NA Intergenic Intergenic -14341 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 30156 chr9 127740741 127740972 + 0 NA intron (NM_170600, intron 9 of 11) AluSc8|SINE|Alu -5507 NM_001252018 27433 Hs.444106 NM_130459 ENSG00000160404 TOR2A TORP1 torsin family 2 member A protein-coding 6947 chr12 48022009 48022153 + 0 NA Intergenic Intergenic -17579 NM_033150 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 6085 chr11 112120477 112120607 + 0 NA Intergenic Intergenic 33718 NM_001276506 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 30886 chrX 101408015 101408173 + 0 NA promoter-TSS (NM_000169) promoter-TSS (NM_000169) -39 NM_001032393 3188 Hs.432485 NM_019597 ENSG00000126945 HNRNPH2 FTP3|HNRPH'|HNRPH2|MRXSB|hnRNPH' heterogeneous nuclear ribonucleoprotein H2 (H') protein-coding 18609 chr22 17576470 17576676 + 0 NA intron (NM_031481, intron 2 of 10) intron (NM_031481, intron 2 of 10) 12619 NM_001288707 101929372 Hs.629929 NM_001288707 ENSG00000236754 LOC101929372 - uncharacterized LOC101929372 protein-coding 6715 chr12 19397733 19397836 + 0 NA Intergenic Intergenic -41890 NM_001114176 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 8899 chr14 37114113 37114238 + 0 NA intron (NM_030631, intron 1 of 9) intron (NM_030631, intron 1 of 9) -57851 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 8745 chr14 24014129 24014233 + 0 NA intron (NR_102687, intron 1 of 3) HERVK-int|LTR|ERVK 7172 NR_102688 728635 Hs.647569 NM_001082488 DHRS4L1 SDR25C4 dehydrogenase/reductase 4 like 1 protein-coding 17568 chr20 10034973 10035084 + 0 NA promoter-TSS (NM_001303472) promoter-TSS (NM_001303472) 29 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 13342 chr18 24272132 24272236 + 0 NA promoter-TSS (NM_018030) promoter-TSS (NM_018030) 48 NM_018030 114876 Hs.370725 NM_018030 ENSG00000141447 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein like 1A protein-coding 26911 chr7 121102794 121102936 + 0 NA intron (NM_001105533, intron 6 of 17) L1MEh|LINE|L1 113474 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 7910 chr12 132414991 132415145 + 0 NA Intergenic Intergenic -75503 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin like 1 protein-coding 19107 chr3 5196755 5196859 + 0 NA intron (NM_014674, intron 2 of 11) intron (NM_014674, intron 2 of 11) 9133 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 23926 chr6 4358763 4358941 + 0 NA Intergenic Intergenic -69150 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 23151 chr5 127206408 127206512 + 0 NA Intergenic Intergenic -84304 NM_001256545 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 27219 chr7 150400278 150400382 + 0 NA Intergenic Intergenic -5422 NR_027237 728743 Hs.650365 NM_001080852 LOC728743 - zinc finger protein pseudogene pseudo 26551 chr7 87934222 87934273 + 0 NA 5' UTR (NM_016351, exon 1 of 30) 5' UTR (NM_016351, exon 1 of 30) 104 NM_001324420 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|MDC2 ADAM metallopeptidase domain 22 protein-coding 8884 chr14 36374111 36374215 + 0 NA Intergenic Intergenic -53487 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 6069 chr11 111510423 111510592 + 0 NA intron (NM_017589, intron 1 of 5) intron (NM_017589, intron 1 of 5) 1847 NM_017589 54766 Hs.128180 NM_017589 ENSG00000137707 BTG4 APRO3|PC3B BTG anti-proliferation factor 4 protein-coding 22665 chr5 67879731 67879835 + 0 NA Intergenic Intergenic 86570 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 14016 chr19 7391550 7391585 + 0 NA Intergenic L2b|LINE|L2 -3546 NM_015318 23370 Hs.465761 NM_015318 ENSG00000104880 ARHGEF18 P114-RhoGEF Rho/Rac guanine nucleotide exchange factor 18 protein-coding 7262 chr12 72025633 72025712 + 0 NA intron (NM_173353, intron 9 of 10) X6B_LINE|LINE|CR1 86826 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 24609 chr6 44172816 44172932 + 0 NA intron (NM_007058, intron 5 of 22) intron (NM_007058, intron 5 of 22) 14063 NM_007058 11131 Hs.225953 NM_007058 ENSG00000137225 CAPN11 calpain11 calpain 11 protein-coding 5632 chr11 72722541 72722671 + 0 NA promoter-TSS (NM_001135190) promoter-TSS (NM_001135190) -248 NM_001135190 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 24891 chr6 87322553 87322694 + 0 NA promoter-TSS (NM_001042493) promoter-TSS (NM_001042493) 35 NM_001042493 57150 Hs.70769 NM_020425 ENSG00000111850 SMIM8 C6orf162|dJ102H19.2 small integral membrane protein 8 protein-coding 10681 chr15 90143326 90143430 + 0 NA Intergenic Intergenic -40824 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 305 chr1 20476545 20476648 + 0 NA Intergenic Intergenic 9639 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 11475 chr16 66516900 66517050 + 0 NA intron (NM_001271935, intron 6 of 7) intron (NM_001271935, intron 6 of 7) 32850 NM_001272050 7084 Hs.512619 NM_004614 ENSG00000166548 TK2 MTDPS2|MTTK|PEOB3|SCA31 thymidine kinase 2, mitochondrial protein-coding 8584 chr13 109151383 109151487 + 0 NA intron (NM_001198950, intron 32 of 34) intron (NM_001198950, intron 32 of 34) 15868 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 23699 chr5 170219862 170219974 + 0 NA Intergenic L2a|LINE|L2 -12999 NR_131092 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 19354 chr3 37946080 37946276 + 0 NA intron (NM_001008392, intron 1 of 7) intron (NM_001008392, intron 1 of 7) -23226 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 17541 chr20 6123464 6123617 + 0 NA promoter-TSS (NM_017671) promoter-TSS (NM_017671) 4 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 29781 chr9 107504965 107505069 + 0 NA Intergenic UCON78|DNA|DNA -15297 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 27035 chr7 133082124 133082310 + 0 NA promoter-TSS (NM_001317178) promoter-TSS (NM_001317178) -59 NM_001317178 54927 Hs.655010 NM_017812 ENSG00000106554 CHCHD3 MINOS3|Mic19|PPP1R22 coiled-coil-helix-coiled-coil-helix domain containing 3 protein-coding 16772 chr2 182038732 182038836 + 0 NA intron (NM_001080545, intron 2 of 4) L3|LINE|CR1 52960 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 19488 chr3 49094232 49094300 + 0 NA promoter-TSS (NM_001320580) promoter-TSS (NM_001320580) 107 NM_017730 54870 Hs.297389 NM_017730 ENSG00000198218 QRICH1 - glutamine rich 1 protein-coding 8889 chr14 36661737 36661889 + 0 NA 5' UTR (NM_006194, exon 2 of 5) 5' UTR (NM_006194, exon 2 of 5) 4245 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 30945 chrX 107825849 107825953 + 0 NA promoter-TSS (NM_012216) promoter-TSS (NM_012216) 47 NM_052817 11043 Hs.12256 NM_012216 ENSG00000080561 MID2 FXY2|MRX101|RNF60|TRIM1 midline 2 protein-coding 28377 chr8 104273472 104273507 + 0 NA Intergenic LOR1-int|LTR|ERV1 50154 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 10451 chr15 74842699 74842832 + 0 NA TTS (NM_005697) TTS (NM_005697) 446 NM_001284364 25989 Hs.513034 NM_001099436 ENSG00000140474 ULK3 - unc-51 like kinase 3 protein-coding 4276 chr10 103368606 103368764 + 0 NA intron (NM_006951, intron 1 of 10) CpG 732 NM_006951 6877 Hs.96103 NM_006951 ENSG00000148835 TAF5 TAF(II)100|TAF2D|TAFII-100|TAFII100 TATA-box binding protein associated factor 5 protein-coding 4076 chr10 92574090 92574194 + 0 NA promoter-TSS (NR_136399) promoter-TSS (NR_136399) -47 NM_004969 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 17792 chr20 23920278 23920334 + 0 NA Intergenic Intergenic -40563 NM_001900 1473 Hs.121489 NM_001900 ENSG00000170367 CST5 - cystatin D protein-coding 9545 chr14 90444268 90444278 + 0 NA Intergenic Intergenic -10957 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 16023 chr2 101002134 101002314 + 0 NA promoter-TSS (NM_000993) promoter-TSS (NM_000993) -5 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 28839 chr8 144448479 144448641 + 0 NA Intergenic Intergenic -4131 NM_013432 4796 Hs.675285 NM_013432 ENSG00000160949 TONSL IKBR|NFKBIL2 tonsoku-like, DNA repair protein protein-coding 3832 chr10 70170644 70170748 + 0 NA promoter-TSS (NM_001142648) promoter-TSS (NM_001142648) -167 NM_001142648 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 30653 chrX 46209969 46210000 + 0 NA Intergenic Intergenic 117690 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 18761 chr22 29581030 29581264 + 0 NA promoter-TSS (NM_001202502) promoter-TSS (NM_001202502) -51 NM_001202502 8508 Hs.173878 NM_003634 ENSG00000184117 NIPSNAP1 - nipsnap homolog 1 protein-coding 7382 chr12 88580441 88580533 + 0 NA promoter-TSS (NM_000899) promoter-TSS (NM_000899) -14 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7 KIT ligand protein-coding 24923 chr6 90870772 90870876 + 0 NA Intergenic L2|LINE|L2 -283523 NM_003188 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 9563 chr14 92106291 92106367 + 0 NA intron (NR_028460, intron 1 of 5) CpG 292 NR_028467 4287 Hs.532632 NM_004993 ENSG00000066427 ATXN3 AT3|ATX3|JOS|MJD|MJD1|SCA3 ataxin 3 protein-coding 10671 chr15 89575397 89575434 + 0 NA promoter-TSS (NM_001308025) promoter-TSS (NM_001308025) -172 NM_152259 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 17399 chr2 241150411 241150414 + 0 NA promoter-TSS (NM_001252124) promoter-TSS (NM_001252124) -433 NM_001252120 23178 Hs.397891 NM_015148 ENSG00000115687 PASK PASKIN|STK37 PAS domain containing serine/threonine kinase protein-coding 18994 chr22 44309212 44309223 + 0 NA intron (NM_001099294, intron 1 of 4) L2a|LINE|L2 3634 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 KIAA1644 - KIAA1644 protein-coding 16561 chr2 162114372 162114500 + 0 NA promoter-TSS (NR_110255) promoter-TSS (NR_110255) -5 NR_110255 101929532 Hs.639883 NR_110255 ENSG00000236841 LOC101929532 - uncharacterized LOC101929532 ncRNA 14909 chr2 1632118 1632133 + 0 NA 3' UTR (NM_012293, exon 23 of 23) 3' UTR (NM_012293, exon 23 of 23) 112422 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 1655 chr1 147599737 147599756 + 0 NA intron (NM_004326, intron 1 of 9) CpG 58245 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS B-cell CLL/lymphoma 9 protein-coding 19532 chr3 51982877 51982895 + 0 NA promoter-TSS (NM_001198896) promoter-TSS (NM_001198896) -398 NM_001198897 95 Hs.334707 NM_000666 ENSG00000243989 ACY1 ACY-1|ACY1D|HEL-S-5 aminoacylase 1 protein-coding 5077 chr11 30323000 30323177 + 0 NA promoter-TSS (NM_152316) promoter-TSS (NM_152316) -11 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 21493 chr4 80184154 80184289 + 0 NA Intergenic CpG -1049 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 26920 chr7 121745058 121745156 + 0 NA Intergenic MIR|SINE|MIR -127998 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase, receptor type Z1 protein-coding 14097 chr19 10939417 10939521 + 0 NA Intergenic AluSx1|SINE|Alu -10457 NM_024029 78992 Hs.164026 NM_024029 ENSG00000130733 YIPF2 FinGER2 Yip1 domain family member 2 protein-coding 11269 chr16 31508388 31508537 + 0 NA promoter-TSS (NM_022744) promoter-TSS (NM_022744) -43 NM_022744 64755 Hs.9003 NM_022744 ENSG00000140688 C16orf58 RUS chromosome 16 open reading frame 58 protein-coding 22364 chr5 34929871 34929936 + 0 NA exon (NM_001012339, exon 1 of 12) exon (NM_001012339, exon 1 of 12) 310 NM_001012339 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 3779 chr10 63554182 63554293 + 0 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -32162 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 5724 chr11 79616735 79616792 + 0 NA Intergenic Intergenic -176112 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 25440 chr6 160391476 160391575 + 0 NA intron (NM_021977, intron 1 of 10) MIRb|SINE|MIR 43152 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 17516 chr20 5073402 5073542 + 0 NA intron (NM_001330987, intron 3 of 3) intron (NM_001330987, intron 3 of 3) 39615 NM_001330986 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 21261 chr4 25377003 25377107 + 0 NA promoter-TSS (NM_001286756) promoter-TSS (NM_001286756) -171 NM_013367 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 14359 chr19 34501588 34501773 + 0 NA TTS (NM_001080436) TTS (NM_001080436) 19705 NM_001080436 126374 Hs.585010 NM_001080436 ENSG00000142279 WTIP - Wilms tumor 1 interacting protein protein-coding 6060 chr11 111206759 111206801 + 0 NA Intergenic Intergenic -49202 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 16110 chr2 109614033 109614202 + 0 NA promoter-TSS (NM_001321514) promoter-TSS (NM_001321514) 89 NM_001321498 151011 Hs.469615 NM_144710 ENSG00000186522 SEPT10 - septin 10 protein-coding 22145 chr5 912623 912727 + 0 NA intron (NM_004237, intron 10 of 12) CpG 19821 NM_004237 9319 Hs.436187 NM_004237 ENSG00000071539 TRIP13 16E1BP thyroid hormone receptor interactor 13 protein-coding 15814 chr2 73926768 73926963 + 0 NA promoter-TSS (NR_134894) promoter-TSS (NR_134894) 39 NR_134897 1716 Hs.469022 NM_001929 ENSG00000114956 DGUOK MTDPS3|NCPH|PEOB4|dGK deoxyguanosine kinase protein-coding 26626 chr7 94824110 94824214 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger -83475 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 19420 chr3 42881107 42881245 + 0 NA Intergenic CpG -5035 NM_004391 1582 Hs.447793 NM_004391 ENSG00000180432 CYP8B1 CP8B|CYP12 cytochrome P450 family 8 subfamily B member 1 protein-coding 9924 chr15 40323421 40323517 + 0 NA promoter-TSS (NM_001301268) promoter-TSS (NM_001301268) -587 NM_001301268 100505573 Hs.530791 NM_001301268 INAFM2 LINC00984|OGU1 InaF motif containing 2 protein-coding 1018 chr1 64039577 64039724 + 0 NA intron (NM_005012, intron 2 of 8) intron (NM_005012, intron 2 of 8) 72555 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 1125 chr1 74198151 74198207 + 0 NA promoter-TSS (NM_001105659) promoter-TSS (NM_001105659) 8 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 9765 chr14 106534121 106534225 + 0 NA Intergenic Intergenic 51734 NR_027457 338005 Hs.322826 NR_027457 ENSG00000270816 LINC00221 C14orf98|NCRNA00221 long intergenic non-protein coding RNA 221 ncRNA 741 chr1 42846392 42846486 + 0 NA promoter-TSS (NM_001242739) promoter-TSS (NM_001242739) -134 NM_001242739 51058 Hs.20879 NM_015911 ENSG00000164011 ZNF691 Zfp691 zinc finger protein 691 protein-coding 22115 chr4 185897157 185897261 + 0 NA intron (NM_001270771, intron 1 of 23) MER39B|LTR|ERV1 59507 NM_001270771 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 2806 chr1 224175812 224175957 + 0 NA Intergenic Intergenic -7324 NM_001321541 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 18483 chr21 33324768 33325007 + 0 NA promoter-TSS (NM_000629) promoter-TSS (NM_000629) -22 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 9241 chr14 67187992 67188096 + 0 NA Intergenic Intergenic -1349 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 7922 chr12 132986270 132986422 + 0 NA promoter-TSS (NM_001256279) promoter-TSS (NM_001256279) -2 NM_001256279 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 7439 chr12 93467749 93467853 + 0 NA intron (NR_038161, intron 1 of 6) intron (NR_038161, intron 1 of 6) 311 NM_014050 28977 Hs.199579 NM_014050 ENSG00000198015 MRPL42 HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT mitochondrial ribosomal protein L42 protein-coding 17535 chr20 5823219 5823323 + 0 NA intron (NM_001303478, intron 3 of 3) intron (NM_001303478, intron 3 of 3) 72884 NM_001303478 149840 Hs.529340 NM_152504 ENSG00000171984 C20orf196 - chromosome 20 open reading frame 196 protein-coding 11791 chr16 85615163 85615267 + 0 NA intron (NM_001278184, intron 1 of 14) CpG-10032 1979 NM_001278184 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 23240 chr5 134226124 134226277 + 0 NA promoter-TSS (NM_002715) promoter-TSS (NM_002715) 59 NM_002715 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 3880 chr10 72889472 72889624 + 0 NA Intergenic L1MB3|LINE|L1 -4008 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 3192 chr10 3525945 3526049 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 207302 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 30512 chrX 14873090 14873218 + 0 NA promoter-TSS (NM_152581) promoter-TSS (NM_152581) -85 NM_001324162 2187 Hs.554740 NM_152633 ENSG00000181544 FANCB FA2|FAAP90|FAAP95|FAB|FACB Fanconi anemia complementation group B protein-coding 4294 chr10 104086129 104086269 + 0 NA promoter-TSS (NM_000494) promoter-TSS (NM_000494) -319 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 29555 chr9 92723391 92723495 + 0 NA intron (NM_015250, intron 2 of 7) L1MB8|LINE|L1 41358 NM_015250 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|bA526D8.1 BICD cargo adaptor 2 protein-coding 10498 chr15 78149348 78149477 + 0 NA promoter-TSS (NM_005530) promoter-TSS (NM_005530) 35 NM_005530 3419 Hs.591110 NM_005530 ENSG00000166411 IDH3A - isocitrate dehydrogenase 3 (NAD(+)) alpha protein-coding 5159 chr11 35593317 35593442 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -24808 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four jointed box 1 protein-coding 25491 chr6 169213019 169213111 + 0 NA promoter-TSS (NR_134621) promoter-TSS (NR_134621) -147 NR_134621 101929523 Hs.442696 NR_134621 ENSG00000226445 LOC101929523 - uncharacterized LOC101929523 ncRNA 21571 chr4 88600244 88600384 + 0 NA intron (NM_001271602, intron 2 of 24) Tigger17|DNA|TcMar-Tigger 7891 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 13522 chr18 48073394 48073588 + 0 NA intron (NM_001318841, intron 3 of 4) intron (NM_001318841, intron 3 of 4) 63818 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 1545 chr1 114346606 114346755 + 0 NA Intergenic Intergenic 164480 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 8352 chr13 74036532 74036636 + 0 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 97345 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 1058 chr1 66924886 66925041 + 0 NA promoter-TSS (NM_024763) promoter-TSS (NM_024763) 68 NM_001146112 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 7561 chr12 104220123 104220247 + 0 NA intron (NM_001093771, intron 1 of 16) intron (NM_001093771, intron 1 of 16) 4406 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 21548 chr4 86845820 86845916 + 0 NA intron (NM_197965, intron 1 of 5) intron (NM_197965, intron 1 of 5) 3395 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 10287 chr15 64989988 64990110 + 0 NA promoter-TSS (NM_001127889) promoter-TSS (NM_001127889) -103 NM_001127890 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ACP33|BM-019|GL010|MAST spastic paraplegia 21 (autosomal recessive, Mast syndrome) protein-coding 26096 chr7 39720688 39720833 + 0 NA Intergenic MER4D1|LTR|ERV1 -12808 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 27754 chr8 42692620 42692733 + 0 NA Intergenic Intergenic -4700 NM_001347717 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 16262 chr2 123840086 123840267 + 0 NA Intergenic L1PA16|LINE|L1 -185111 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 19748 chr3 99395513 99395652 + 0 NA Intergenic Intergenic -243014 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 5417 chr11 63961759 63961863 + 0 NA Intergenic Intergenic -12796 NM_004074 1351 Hs.743989 NM_004074 ENSG00000176340 COX8A COX|COX8|COX8-2|COX8L|VIII|VIII-L cytochrome c oxidase subunit 8A protein-coding 28218 chr8 94639142 94639283 + 0 NA non-coding (NR_034034, exon 1 of 1) non-coding (NR_034034, exon 1 of 1) 255 NR_034034 100288748 Hs.608210 NR_034034 ENSG00000261437 LOC100288748 - uncharacterized LOC100288748 ncRNA 8306 chr13 52980825 52980931 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -47863 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 6211 chr11 120400885 120401030 + 0 NA intron (NM_001301084, intron 1 of 40) intron (NM_001301084, intron 1 of 40) 15663 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 18782 chr22 30312321 30312425 + 0 NA intron (NM_001204240, intron 1 of 8) intron (NM_001204240, intron 1 of 8) 14593 NM_001204240 83874 Hs.655273 NM_031937 ENSG00000099992 TBC1D10A EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 TBC1 domain family member 10A protein-coding 22367 chr5 35777834 35777907 + 0 NA intron (NM_024867, intron 29 of 36) intron (NM_024867, intron 29 of 36) -79005 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 23825 chr5 179796074 179796221 + 0 NA intron (NM_145867, intron 4 of 4) CpG-22936 2162 NM_145867 4056 Hs.706741 NM_145867 ENSG00000213316 LTC4S - leukotriene C4 synthase protein-coding 8181 chr13 42487018 42487111 + 0 NA Intergenic Intergenic 62172 NR_135319 105370177 NR_135319 ENSG00000283554 LOC105370177 - uncharacterized LOC105370177 ncRNA 28361 chr8 102924964 102925033 + 0 NA intron (NR_126339, intron 2 of 2) intron (NR_126339, intron 2 of 2) 60727 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 1535 chr1 113308512 113308616 + 0 NA Intergenic Intergenic -82289 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 20694 chr3 176274380 176274440 + 0 NA Intergenic MLT2B3|LTR|ERVL -240693 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 5299 chr11 58688817 58688921 + 0 NA Intergenic L2b|LINE|L2 43105 NM_005838 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 4978 chr11 19442385 19442538 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 64768 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 3775 chr10 63465372 63465479 + 0 NA non-coding (NR_027182, exon 1 of 1) non-coding (NR_027182, exon 1 of 1) 196 NR_027182 84989 Hs.659950 NM_032903 ENSG00000272767 JMJD1C-AS1 - JMJD1C antisense RNA 1 ncRNA 4652 chr11 236813 236941 + 0 NA promoter-TSS (NM_001017524) promoter-TSS (NM_001017524) 69 NM_175932 5719 Hs.134688 NM_002817 ENSG00000185627 PSMD13 HSPC027|Rpn9|S11|p40.5 proteasome 26S subunit, non-ATPase 13 protein-coding 3780 chr10 63554830 63554934 + 0 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -32807 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 26727 chr7 101218044 101218152 + 0 NA promoter-TSS (NM_001084) promoter-TSS (NM_001084) -368 NM_001084 8985 Hs.153357 NM_001084 ENSG00000106397 PLOD3 LH3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 protein-coding 24761 chr6 64680683 64680760 + 0 NA intron (NM_001292009, intron 22 of 43) L1MEf|LINE|L1 -620697 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 10891 chr16 2531948 2532080 + 0 NA promoter-TSS (NR_036139) promoter-TSS (NR_036139) -9 NR_036139 100422974 NR_036139 ENSG00000266232 MIR3178 mir-3178 microRNA 3178 ncRNA 20889 chr3 187986607 187986711 + 0 NA Intergenic Intergenic -10252 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 8992 chr14 51533410 51533516 + 0 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 44342 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 18343 chr20 59032442 59032546 + 0 NA promoter-TSS (NM_006886) promoter-TSS (NM_006886) -127 NM_006886 514 Hs.177530 NM_006886 ENSG00000124172 ATP5E ATPE|MC5DN3 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit protein-coding 29346 chr9 79759534 79759638 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -64944 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 15470 chr2 45651069 45651173 + 0 NA promoter-TSS (NM_005400) promoter-TSS (NM_005400) -783 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 4579 chr10 125879525 125879629 + 0 NA intron (NM_018180, intron 1 of 10) MER57E1|LTR|ERV1 1738 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 26083 chr7 38369934 38370087 + 0 NA intron (NR_040085, intron 3 of 3) L1MD2|LINE|L1 28433 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 15779 chr2 71130544 71130661 + 0 NA promoter-TSS (NM_032601) promoter-TSS (NM_032601) 288 NM_005791 10199 Hs.656208 NM_005791 ENSG00000124383 MPHOSPH10 CT90|MPP10|MPP10P|PPP1R106 M-phase phosphoprotein 10 protein-coding 16544 chr2 160309024 160309128 + 0 NA intron (NM_016836, intron 4 of 13) intron (NM_016836, intron 4 of 13) -37181 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000115221 LOC100505984 - uncharacterized LOC100505984 ncRNA 29962 chr9 115615949 115616102 + 0 NA Intergenic Intergenic 128214 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 24267 chr6 27890744 27890822 + 0 NA promoter-TSS (NM_003535) promoter-TSS (NM_003535) 9 NM_003535 8356 Hs.484990 NM_003535 ENSG00000197153 HIST1H3J H3/j|H3FJ histone cluster 1 H3 family member j protein-coding 27188 chr7 148339584 148339621 + 0 NA intron (NM_014141, intron 21 of 23) CpG -250963 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 10135 chr15 55279792 55279896 + 0 NA intron (NM_183235, intron 1 of 6) intron (NM_183235, intron 1 of 6) -8935 NM_183236 5873 Hs.626665 NM_004580 ENSG00000069974 RAB27A GS2|HsT18676|RAB27|RAM RAB27A, member RAS oncogene family protein-coding 2979 chr1 234140074 234140178 + 0 NA intron (NM_173508, intron 2 of 7) MER44B|DNA|TcMar-Tigger -74085 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 2961 chr1 232953005 232953165 + 0 NA intron (NR_138027, intron 1 of 4) LTR16C|LTR|ERVL 2243 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 8824 chr14 33686264 33686368 + 0 NA intron (NM_001164749, intron 6 of 11) intron (NM_001164749, intron 6 of 11) -22621 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 30006 chr9 118652402 118652506 + 0 NA Intergenic Intergenic 717007 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 28766 chr8 140636129 140636268 + 0 NA promoter-TSS (NM_012154) promoter-TSS (NM_012154) -651 NM_001164623 27161 Hs.743313 NM_012154 ENSG00000123908 AGO2 EIF2C2|Q10 argonaute 2, RISC catalytic component protein-coding 19045 chr22 49918475 49918622 + 0 NA promoter-TSS (NM_024105) promoter-TSS (NM_024105) -82 NR_104295 79174 Hs.211282 NM_024324 ENSG00000184164 CRELD2 - cysteine rich with EGF like domains 2 protein-coding 23750 chr5 173888120 173888250 + 0 NA promoter-TSS (NM_001308191) promoter-TSS (NM_001308191) -143 NM_001308191 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 16417 chr2 144332515 144332546 + 0 NA promoter-TSS (NM_001164629) promoter-TSS (NM_001164629) 4 NM_001284235 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 11215 chr16 30378288 30378462 + 0 NA promoter-TSS (NM_001214906) promoter-TSS (NM_001214906) 61 NM_001214907 197407 Hs.513501 NM_152652 ENSG00000180035 ZNF48 ZNF553 zinc finger protein 48 protein-coding 23066 chr5 115858046 115858184 + 0 NA intron (NM_001002924, intron 2 of 6) HAL1|LINE|L1 -16264 NR_033362 9140 Hs.264482 NM_004707 ENSG00000145782 ATG12 APG12|APG12L|FBR93|HAPG12 autophagy related 12 protein-coding 22376 chr5 36151962 36152138 + 0 NA promoter-TSS (NM_032637) promoter-TSS (NM_032637) 7 NM_005983 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 735 chr1 42463070 42463240 + 0 NA intron (NM_001287511, intron 2 of 2) CpG 6661 NM_001077447 79717 Hs.706662 NM_024664 ENSG00000127125 PPCS - phosphopantothenoylcysteine synthetase protein-coding 24710 chr6 53548057 53548201 + 0 NA Intergenic CpG -3000 NM_001498 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 20584 chr3 167734934 167735044 + 0 NA promoter-TSS (NM_007217) promoter-TSS (NM_007217) -126 NM_145859 11235 Hs.478150 NM_007217 ENSG00000114209 PDCD10 CCM3|TFAR15 programmed cell death 10 protein-coding 15332 chr2 33070217 33070293 + 0 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -64342 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 28111 chr8 82239029 82239133 + 0 NA Intergenic Intergenic -396795 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 9889 chr15 38251856 38251960 + 0 NA promoter-TSS (NM_152594) promoter-TSS (NM_152594) -943 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 21736 chr4 118591546 118591772 + 0 NA promoter-TSS (NR_109983) promoter-TSS (NR_109983) -85 NR_109983 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 8654 chr13 114078731 114078835 + 0 NA promoter-TSS (NM_001320822) promoter-TSS (NM_001320822) -804 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 1271 chr1 89466439 89466543 + 0 NA Intergenic Intergenic -58347 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 family member B protein-coding 6921 chr12 45728906 45729051 + 0 NA promoter-TSS (NM_152641) promoter-TSS (NM_152641) -731 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|p200 AT-rich interaction domain 2 protein-coding 26829 chr7 112239341 112239346 + 0 NA intron (NM_021994, intron 1 of 11) L1MA3|LINE|L1 32755 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 26432 chr7 75073721 75073875 + 0 NA promoter-TSS (NM_001281441) promoter-TSS (NM_001281441) 83 NM_001281441 81554 Hs.529623 NM_030798 ENSG00000274523 RCC1L WBSCR16 RCC1 like protein-coding 9713 chr14 103057467 103057571 + 0 NA promoter-TSS (NM_006035) promoter-TSS (NM_006035) -114 NM_006035 9578 Hs.654634 NM_006035 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta protein-coding 21771 chr4 123588234 123588362 + 0 NA Intergenic Intergenic -64487 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 10048 chr15 48683071 48683223 + 0 NA Intergenic L1MA3|LINE|L1 -37359 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 15337 chr2 35503854 35503958 + 0 NA Intergenic Intergenic 32501 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 7324 chr12 80101224 80101384 + 0 NA Intergenic Intergenic -108149 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 21409 chr4 61555841 61555945 + 0 NA intron (NM_001322402, intron 4 of 25) MER41A|LTR|ERV1 354637 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 14613 chr19 47241109 47241237 + 0 NA Intergenic Intergenic -8407 NM_001127242 27113 Hs.467020 NM_014417 ENSG00000105327 BBC3 JFY-1|JFY1|PUMA BCL2 binding component 3 protein-coding 1710 chr1 151347199 151347354 + 0 NA promoter-TSS (NM_000449) promoter-TSS (NM_000449) 17 NM_001025603 5993 Hs.632472 NM_000449 ENSG00000143390 RFX5 - regulatory factor X5 protein-coding 9710 chr14 102592424 102592501 + 0 NA promoter-TSS (NM_015156) promoter-TSS (NM_015156) -197 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 30811 chrX 71068545 71068669 + 0 NA promoter-TSS (NM_001256186) promoter-TSS (NM_001256186) -159 NM_013346 29934 Hs.260750 NM_013346 ENSG00000147164 SNX12 - sorting nexin 12 protein-coding 25359 chr6 152573010 152573114 + 0 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 63789 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 11862 chr16 90022557 90022700 + 0 NA promoter-TSS (NM_001286205) promoter-TSS (NM_001286205) 28 NM_001286205 2622 Hs.431792 NM_001481 ENSG00000141013 GAS8 CILD33|DRC4|GAS11 growth arrest specific 8 protein-coding 6271 chr11 124837088 124837222 + 0 NA Intergenic Intergenic -28254 NM_022370 64221 Hs.435621 NM_022370 ENSG00000154134 ROBO3 HGPPS|HGPS|RBIG1|RIG1 roundabout guidance receptor 3 protein-coding 26020 chr7 33895397 33895540 + 0 NA Intergenic Intergenic -9443 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 14653 chr19 48619310 48619436 + 0 NA promoter-TSS (NR_073022) promoter-TSS (NR_073022) 45 NM_001270490 6141 Hs.515517 NM_000979 ENSG00000063177 RPL18 L18 ribosomal protein L18 protein-coding 5476 chr11 65472155 65472283 + 0 NA Intergenic Intergenic -25519 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 2421 chr1 202952837 202952941 + 0 NA intron (NM_015999, intron 1 of 7) intron (NM_015999, intron 1 of 7) 5095 NM_001290553 51094 Hs.5298 NM_015999 ENSG00000159346 ADIPOR1 ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A adiponectin receptor 1 protein-coding 12371 chr17 35460499 35460565 + 0 NA Intergenic CpG -11695 NM_144682 146857 Hs.462833 NM_144682 ENSG00000154760 SLFN13 SLFN10 schlafen family member 13 protein-coding 4132 chr10 96089834 96089938 + 0 NA intron (NR_134322, intron 1 of 3) CpG 349 NR_038444 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 1118 chr1 72000795 72000892 + 0 NA intron (NM_173808, intron 1 of 6) MER61E|LTR|ERV1 -163831 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 16019 chr2 100562806 100562934 + 0 NA promoter-TSS (NM_024065) promoter-TSS (NM_024065) -86 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 13816 chr18 79069148 79069342 + 0 NA promoter-TSS (NM_001306085) promoter-TSS (NM_001306085) -30 NM_001306085 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 13157 chr17 82154011 82154151 + 0 NA 3' UTR (NM_001316321, exon 15 of 15) 3' UTR (NM_001316321, exon 15 of 15) -55851 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 5152 chr11 35111662 35111766 + 0 NA Intergenic Intergenic 26318 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 28317 chr8 100952038 100952241 + 0 NA promoter-TSS (NM_145690) promoter-TSS (NM_145690) -10 NM_145690 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 22850 chr5 88785096 88785228 + 0 NA intron (NM_001193347, intron 4 of 11) intron (NM_001193347, intron 4 of 11) 38765 NM_001193349 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 7732 chr12 119632539 119632643 + 0 NA intron (NM_001136534, intron 2 of 2) MER102c|DNA|hAT-Charlie -35365 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 23312 chr5 138725334 138725481 + 0 NA Intergenic Intergenic 27902 NR_134245 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 6938 chr12 47782118 47782301 + 0 NA TTS (NM_001308090) TTS (NM_001308090) 9025 NM_017842 55652 Hs.438867 NM_017842 ENSG00000211584 SLC48A1 HRG-1|HRG1|hHRG-1 solute carrier family 48 member 1 protein-coding 5564 chr11 67506099 67506198 + 0 NA promoter-TSS (NM_001130848) promoter-TSS (NM_001130848) -776 NM_004910 9600 Hs.372295 NM_004910 ENSG00000110697 PITPNM1 DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9 phosphatidylinositol transfer protein membrane associated 1 protein-coding 28079 chr8 80300031 80300135 + 0 NA Intergenic Intergenic 58694 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 5561 chr11 67428373 67428529 + 0 NA promoter-TSS (NM_003952) promoter-TSS (NM_003952) -13 NM_003952 6199 Hs.534345 NM_003952 ENSG00000175634 RPS6KB2 KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|SRK|STK14B|p70(S6K)-beta|p70S6Kb ribosomal protein S6 kinase B2 protein-coding 4191 chr10 99337419 99337520 + 0 NA intron (NR_144311, intron 1 of 10) L2c|LINE|L2 8370 NM_001345889 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 600 chr1 34782132 34782267 + 0 NA promoter-TSS (NM_001005752) promoter-TSS (NM_001005752) -111 NM_001005752 2707 Hs.522561 NM_024009 ENSG00000188910 GJB3 CX31|DFNA2|DFNA2B|EKV gap junction protein beta 3 protein-coding 336 chr1 22451838 22451885 + 0 NA promoter-TSS (NM_014870) promoter-TSS (NM_014870) 10 NM_001083621 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 6806 chr12 28190700 28190814 + 0 NA intron (NM_001330367, intron 1 of 11) CpG 330 NM_001330367 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 457 chr1 27528206 27528226 + 0 NA Intergenic CpG -38029 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family member 2 protein-coding 18008 chr20 40562160 40562264 + 0 NA Intergenic Intergenic 127028 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 1301 chr1 91804657 91804810 + 0 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 81546 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 4945 chr11 17276473 17276696 + 0 NA promoter-TSS (NM_005013) promoter-TSS (NM_005013) -134 NM_001330227 4925 Hs.654599 NM_005013 ENSG00000070081 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 25683 chr7 12303276 12303380 + 0 NA Intergenic MER50-int|LTR|ERV1 92106 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B - transmembrane protein 106B protein-coding 13858 chr19 1260883 1261033 + 0 NA Intergenic CpG -8308 NM_001300829 1153 Hs.618145 NM_001280 ENSG00000099622 CIRBP CIRP cold inducible RNA binding protein protein-coding 22886 chr5 93078635 93078711 + 0 NA Intergenic Intergenic 492670 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 16941 chr2 202912175 202912324 + 0 NA promoter-TSS (NM_001322429) promoter-TSS (NM_001322429) -23 NM_018256 55759 Hs.73291 NM_018256 ENSG00000138442 WDR12 YTM1 WD repeat domain 12 protein-coding 2497 chr1 206002204 206002335 + 0 NA intron (NM_001164522, intron 1 of 5) intron (NM_001164522, intron 1 of 5) 1197 NM_001164522 338382 Hs.534612 NM_177403 ENSG00000276600 RAB7B RAB7 RAB7B, member RAS oncogene family protein-coding 24102 chr6 16128955 16129121 + 0 NA promoter-TSS (NM_013262) promoter-TSS (NM_013262) -48 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 28244 chr8 96103938 96104089 + 0 NA Intergenic Intergenic 56779 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1 growth differentiation factor 6 protein-coding 16523 chr2 158926819 158926923 + 0 NA Intergenic AluSq|SINE|Alu -41763 NM_001145909 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 11122 chr16 22232603 22232707 + 0 NA intron (NM_013302, intron 2 of 17) intron (NM_013302, intron 2 of 17) 26384 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 25630 chr7 6447940 6447982 + 0 NA promoter-TSS (NM_001142936) promoter-TSS (NM_001142936) 51 NM_001142936 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 5354 chr11 61971993 61972097 + 0 NA Intergenic Intergenic -4385 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 16119 chr2 110149760 110149864 + 0 NA intron (NM_207181, intron 12 of 19) intron (NM_207181, intron 12 of 19) -33246 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T-cell differentiation protein like protein-coding 14955 chr2 9071116 9071264 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -67440 NR_135604 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 3687 chr10 52443475 52443642 + 0 NA Intergenic Intergenic 11714 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LINC01468 lnc-MBL2-4 long intergenic non-protein coding RNA 1468 ncRNA 20285 chr3 141361151 141361255 + 0 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) 36990 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 16462 chr2 151043583 151043795 + 0 NA Intergenic MSTB2|LTR|ERVL-MaLR 218186 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 12717 chr17 55172769 55172873 + 0 NA Intergenic MER81|DNA|hAT-Blackjack -92139 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF, PAR bZIP transcription factor protein-coding 19539 chr3 52057320 52057450 + 0 NA promoter-TSS (NM_001947) promoter-TSS (NM_001947) -940 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 24602 chr6 43699826 43699927 + 0 NA Intergenic Intergenic -12064 NM_018135 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRPS18-3|S18bmt mitochondrial ribosomal protein S18A protein-coding 12862 chr17 65229083 65229187 + 0 NA Intergenic Intergenic 91797 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 12591 chr17 45584649 45584723 + 0 NA Intergenic CpG 17176 NR_026901 644172 Hs.448859 NR_026901 MAPK8IP1P2 - mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2 pseudo 2824 chr1 225428114 225428218 + 0 NA promoter-TSS (NM_002296) promoter-TSS (NM_002296) -53 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 4597 chr10 127797509 127797613 + 0 NA Intergenic Intergenic 60287 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 10735 chr15 93030826 93030880 + 0 NA Intergenic Intergenic 42307 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 12387 chr17 36534169 36534244 + 0 NA promoter-TSS (NM_178517).2 promoter-TSS (NM_178517).2 -556 NM_001346754 284098 Hs.378885 NM_178517 ENSG00000277161 PIGW Gwt1|HPMRS5 phosphatidylinositol glycan anchor biosynthesis class W protein-coding 14444 chr19 39532812 39532923 + 0 NA promoter-TSS (NM_152361) promoter-TSS (NM_152361) 0 NM_152361 126272 Hs.135181 NM_152361 ENSG00000176401 EID2B EID-2B|EID-3 EP300 interacting inhibitor of differentiation 2B protein-coding 11144 chr16 23678720 23678897 + 0 NA promoter-TSS (NM_005030) promoter-TSS (NM_005030) 36 NM_005030 5347 Hs.592049 NM_005030 ENSG00000166851 PLK1 PLK|STPK13 polo like kinase 1 protein-coding 11823 chr16 87807091 87807245 + 0 NA Intergenic Intergenic 27492 NR_106833 102465464 NR_106833 ENSG00000278598 MIR6775 hsa-mir-6775 microRNA 6775 ncRNA 12799 chr17 60526227 60526331 + 0 NA promoter-TSS (NM_001282476) promoter-TSS (NM_001282476) -39 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 21200 chr4 15655330 15655411 + 0 NA promoter-TSS (NM_001193534) promoter-TSS (NM_001193534) 42 NM_001193535 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 18193 chr20 50725037 50725092 + 0 NA Intergenic L2c|LINE|L2 -6480 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 10997 chr16 10386044 10386078 + 0 NA promoter-TSS (NR_045816) promoter-TSS (NR_045816) 6 NM_024997 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 21965 chr4 162163970 162164074 + 0 NA promoter-TSS (NM_001128428) promoter-TSS (NM_001128428) 12 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 14015 chr19 7294314 7294499 + 0 NA promoter-TSS (NM_000208) promoter-TSS (NM_000208) -104 NM_000208 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 4521 chr10 121927394 121927498 + 0 NA promoter-TSS (NR_120495) promoter-TSS (NR_120495) 617 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 14583 chr19 45927784 45927939 + 0 NA Intergenic LTR67B|LTR|ERVL -13083 NM_001029861 339345 Hs.434218 NM_001029861 ENSG00000188425 NANOS2 NOS2|ZC2HC12B nanos C2HC-type zinc finger 2 protein-coding 20317 chr3 142863605 142863709 + 0 NA intron (NM_013363, intron 2 of 8) MamRTE1|LINE|RTE-BovB 25546 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 3208 chr10 4663273 4663440 + 0 NA TTS (NR_015425) TTS (NR_015425) 7200 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 15505 chr2 47191902 47192006 + 0 NA TTS (NR_110208) TTS (NR_110208) -15018 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 17871 chr20 32762565 32762695 + 0 NA 5' UTR (NM_006892, exon 1 of 23) 5' UTR (NM_006892, exon 1 of 23) 245 NM_006892 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 8976 chr14 50521483 50521612 + 0 NA intron (NM_198794, intron 2 of 31) MIRc|SINE|MIR 11111 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 20856 chr3 185937966 185938121 + 0 NA promoter-TSS (NM_004593) promoter-TSS (NM_004593) 93 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog (Drosophila) protein-coding 17045 chr2 212903547 212903685 + 0 NA Intergenic Intergenic -22641 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 15272 chr2 28711848 28711952 + 0 NA Intergenic Intergenic -39848 NM_206876 5500 Hs.702907 NM_002709 ENSG00000213639 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1 catalytic subunit beta protein-coding 29139 chr9 69376706 69376810 + 0 NA intron (NM_001347995, intron 4 of 10) intron (NM_001347995, intron 4 of 10) 47433 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 25565 chr7 2956893 2956931 + 0 NA intron (NM_001324281, intron 3 of 25) intron (NM_001324281, intron 3 of 25) 87033 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|PPBL caspase recruitment domain family member 11 protein-coding 2312 chr1 198107258 198107362 + 0 NA Intergenic LTR8B|LTR|ERV1 -49668 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 23948 chr6 6686887 6686998 + 0 NA Intergenic Intergenic -64116 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 16996 chr2 207529967 207530009 + 0 NA promoter-TSS (NM_134442) promoter-TSS (NM_134442) 96 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 15407 chr2 40395289 40395393 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 34963 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 12485 chr17 41548009 41548176 + 0 NA Intergenic Intergenic 6403 NR_038442 147093 Hs.680576 NR_038442 ENSG00000226629 LINC00974 - long intergenic non-protein coding RNA 974 ncRNA 3096 chr1 243255850 243256064 + 0 NA promoter-TSS (NM_006642).2 promoter-TSS (NM_006642).2 -48 NM_006642 10806 Hs.591530 NM_006642 ENSG00000054282 SDCCAG8 BBS16|CCCAP|CCCAP SLSN7|HSPC085|NPHP10|NY-CO-8|SLSN7|hCCCAP serologically defined colon cancer antigen 8 protein-coding 25343 chr6 151390475 151390574 + 0 NA intron (NM_020861, intron 1 of 2) CpG 1176 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 12380 chr17 35785066 35785220 + 0 NA intron (NM_001032278, intron 1 of 2) intron (NM_001032278, intron 1 of 2) 10564 NM_024302 79148 Hs.380710 NM_024302 ENSG00000271447 MMP28 EPILYSIN|MM28|MMP-25|MMP-28|MMP25 matrix metallopeptidase 28 protein-coding 1030 chr1 64915913 64916017 + 0 NA intron (NM_001321852, intron 1 of 24) HAL1|LINE|L1 50604 NM_001321855 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 15161 chr2 20661684 20661719 + 0 NA Intergenic Intergenic -4963 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 16796 chr2 187774738 187774782 + 0 NA Intergenic L1PA16|LINE|L1 -220255 NM_006287 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 14294 chr19 19405373 19405477 + 0 NA intron (NM_017660, intron 1 of 11) CpG 19592 NM_017660 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 30330 chr9 134025336 134025440 + 0 NA promoter-TSS (NR_015427) promoter-TSS (NR_015427) -51 NR_015427 266655 Hs.654869 NR_002800 ENSG00000235106 LINC00094 LP2477|NCRNA00094|bA374P20.3 long intergenic non-protein coding RNA 94 ncRNA 21143 chr4 6494059 6494163 + 0 NA intron (NM_001206994, intron 2 of 9) intron (NM_001206994, intron 2 of 9) -21512 NM_020416 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 4590 chr10 126460185 126460289 + 0 NA intron (NM_001004298, intron 5 of 8) intron (NM_001004298, intron 5 of 8) -38358 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 - long intergenic non-protein coding RNA 601 ncRNA 28904 chr9 5839388 5839480 + 0 NA Intergenic Intergenic -6353 NM_024896 79956 Hs.591078 NM_024896 ENSG00000099219 ERMP1 FXNA|KIAA1815|bA207C16.3 endoplasmic reticulum metallopeptidase 1 protein-coding 17062 chr2 214810034 214810201 + 0 NA promoter-TSS (NR_104212) promoter-TSS (NR_104212) -112 NR_110292 101928103 Hs.665619 NR_110292 ENSG00000229267 LOC101928103 - uncharacterized LOC101928103 ncRNA 20766 chr3 181974373 181974477 + 0 NA intron (NR_104146, intron 5 of 7) intron (NR_104146, intron 5 of 7) 22061 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 570 chr1 32989378 32989438 + 0 NA Intergenic L3b|LINE|CR1 -24595 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 11493 chr16 67184090 67184197 + 0 NA promoter-TSS (NM_001040715) promoter-TSS (NM_001040715) -163 NM_001040715 653319 Hs.651201 NM_001040715 ENSG00000196123 KIAA0895L - KIAA0895 like protein-coding 15067 chr2 14776352 14776456 + 0 NA Intergenic Intergenic 141313 NM_001291410 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 5191 chr11 38089841 38090007 + 0 NA Intergenic MER11A|LTR|ERVK 151323 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 3761 chr10 62384180 62384284 + 0 NA intron (NM_199451, intron 2 of 7) intron (NM_199451, intron 2 of 7) -9105 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 883 chr1 53220251 53220405 + 0 NA exon (NM_001304759, exon 2 of 7) exon (NM_001304759, exon 2 of 7) 311 NM_001304760 54987 Hs.525391 NM_017887 ENSG00000162384 C1orf123 - chromosome 1 open reading frame 123 protein-coding 17920 chr20 35284751 35284840 + 0 NA promoter-TSS (NM_181468) promoter-TSS (NM_181468) 21 NR_052023 3692 Hs.743992 NM_002212 ENSG00000242372 EIF6 CAB|EIF3A|ITGB4BP|b(2)gcn|eIF-6|p27(BBP)|p27BBP eukaryotic translation initiation factor 6 protein-coding 31164 chrX 152941517 152941621 + 0 NA promoter-TSS (NM_001178115) promoter-TSS (NM_001178115) -102 NM_001178115 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 (LIM domain) protein-coding 15761 chr2 70190981 70191094 + 0 NA promoter-TSS (NM_017880) promoter-TSS (NM_017880) -18 NM_017880 54980 Hs.720049 NM_017880 ENSG00000115998 C2orf42 - chromosome 2 open reading frame 42 protein-coding 4610 chr10 129531834 129531938 + 0 NA intron (NM_002412, intron 1 of 4) intron (NM_002412, intron 1 of 4) 64702 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 17069 chr2 215447810 215447914 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -5845 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 13335 chr18 23872791 23872936 + 0 NA promoter-TSS (NM_000227) promoter-TSS (NM_000227) -157 NM_001127718 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 22265 chr5 15241345 15241449 + 0 NA intron (NR_109944, intron 2 of 2) MER44B|DNA|TcMar-Tigger 25163 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 11848 chr16 89502487 89502627 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -5831 NM_003119 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7, paraplegin matrix AAA peptidase subunit protein-coding 18911 chr22 39152860 39152920 + 0 NA promoter-TSS (NM_001346743) promoter-TSS (NM_001346743) -240 NM_001346743 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 6058 chr11 111059909 111060013 + 0 NA Intergenic Intergenic -196021 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 21627 chr4 100738512 100738628 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -63457 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 21430 chr4 70839894 70839998 + 0 NA promoter-TSS (NM_001098477) promoter-TSS (NM_001098477) -36 NM_002092 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 15199 chr2 25978029 25978133 + 0 NA intron (NM_002254, intron 1 of 7) MIR3|SINE|MIR 4493 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 6199 chr11 119759519 119759623 + 0 NA Intergenic Intergenic 29988 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 9352 chr14 73714299 73714403 + 0 NA promoter-TSS (NM_006029) promoter-TSS (NM_006029) 74 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 paraneoplastic Ma antigen 1 protein-coding 17726 chr20 19924388 19924492 + 0 NA intron (NM_018993, intron 1 of 10) intron (NM_018993, intron 1 of 10) 34874 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 19663 chr3 72339252 72339356 + 0 NA Intergenic Intergenic 107319 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 10243 chr15 62594204 62594308 + 0 NA Intergenic AluJr|SINE|Alu 50925 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 30900 chrX 103656762 103656866 + 0 NA Intergenic MER66-int|LTR|ERV1 27850 NM_001006639 9338 Hs.95243 NM_004780 ENSG00000172465 TCEAL1 SIIR|WEX9|p21|pp21 transcription elongation factor A like 1 protein-coding 28984 chr9 22008784 22008924 + 0 NA exon (NM_004936, exon 1 of 2) exon (NM_004936, exon 1 of 2) 459 NM_004936 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 25057 chr6 116945956 116946055 + 0 NA Intergenic L2|LINE|L2 68792 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 25161 chr6 132687471 132687575 + 0 NA intron (NM_004666, intron 5 of 6) HAL1|LINE|L1 26532 NM_004666 8876 Hs.12114 NM_004666 ENSG00000112299 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 3618 chr10 43409182 43409335 + 0 NA promoter-TSS (NM_001098205) promoter-TSS (NM_001098205) -10 NM_001098204 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 3275 chr10 11035432 11035536 + 0 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 16728 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding 22390 chr5 37379123 37379270 + 0 NA promoter-TSS (NM_018034) promoter-TSS (NM_018034) -64 NM_001345998 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 12656 chr17 50027775 50027906 + 0 NA Intergenic L2a|LINE|L2 27899 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 20290 chr3 141477454 141477539 + 0 NA Intergenic Intergenic -9551 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 22759 chr5 77133275 77133325 + 0 NA intron (NR_024398, intron 3 of 3) MLT1H2|LTR|ERVL-MaLR -46054 NM_032367 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 8330 chr13 66927299 66927395 + 0 NA intron (NM_001318372, intron 2 of 4) L1PA13|LINE|L1 -50042 NR_046636 100874086 Hs.577908 NR_046636 ENSG00000225263 PCDH9-AS3 - PCDH9 antisense RNA 3 ncRNA 30937 chrX 107674242 107674346 + 0 NA Intergenic Intergenic 42187 NM_001015881 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 9233 chr14 65462663 65462714 + 0 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) -8414 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 5976 chr11 102783988 102784092 + 0 NA non-coding (NR_038390, exon 1 of 8) non-coding (NR_038390, exon 1 of 8) 364 NR_038390 100288077 Hs.661772 NR_038390 ENSG00000255282 WTAPP1 - Wilms tumor 1 associated protein pseudogene 1 pseudo 24282 chr6 28542744 28542796 + 0 NA Intergenic Intergenic 14439 NR_144470 2880 Hs.248129 NM_001509 ENSG00000224586 GPX5 HEL-S-75p glutathione peroxidase 5 protein-coding 22003 chr4 169620284 169620437 + 0 NA promoter-TSS (NM_001243372) promoter-TSS (NM_001243372) -161 NM_001829 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 2380 chr1 201704277 201704399 + 0 NA intron (NR_046696, intron 2 of 2) intron (NR_046696, intron 2 of 2) -15170 NR_049823 100847050 NR_049823 ENSG00000264802 MIR5191 - microRNA 5191 ncRNA 24036 chr6 11207253 11207424 + 0 NA intron (NM_182966, intron 2 of 2) (TGTGTG)n|Simple_repeat|Simple_repeat 25344 NM_182966 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 23220 chr5 132677300 132677404 + 0 NA intron (NM_000589, intron 2 of 3) intron (NM_000589, intron 2 of 3) 3366 NM_000589 3565 Hs.73917 NM_000589 ENSG00000113520 IL4 BCGF-1|BCGF1|BSF-1|BSF1|IL-4 interleukin 4 protein-coding 20373 chr3 149512344 149512383 + 0 NA Intergenic Intergenic 37782 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 17868 chr20 32652968 32653139 + 0 NA Intergenic Intergenic -1072 NM_182584 284805 Hs.353262 NM_182584 C20orf203 - chromosome 20 open reading frame 203 protein-coding 3549 chr10 33005359 33005475 + 0 NA Intergenic Intergenic -47052 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 5410 chr11 63813334 63813375 + 0 NA promoter-TSS (NM_138471) promoter-TSS (NM_138471) -20 NM_138471 144097 Hs.502793 NM_138471 ENSG00000168005 C11orf84 - chromosome 11 open reading frame 84 protein-coding 25889 chr7 25125363 25125552 + 0 NA promoter-TSS (NM_018947) promoter-TSS (NM_018947) -96 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 18038 chr20 41643643 41643747 + 0 NA Intergenic Intergenic -25201 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 7241 chr12 67714835 67714939 + 0 NA intron (NR_110063, intron 4 of 4) intron (NR_110063, intron 4 of 4) 14588 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LOC101927901 - uncharacterized LOC101927901 ncRNA 28677 chr8 130193934 130194010 + 0 NA intron (NM_001247996, intron 6 of 30) AluSz6|SINE|Alu 102561 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 19517 chr3 50317014 50317024 + 0 NA TTS (NM_003773) TTS (NM_003773) -4638 NM_153281 3373 Hs.75619 NM_033159 ENSG00000114378 HYAL1 HYAL-1|LUCA1|MPS9|NAT6 hyaluronoglucosaminidase 1 protein-coding 7527 chr12 101052206 101052310 + 0 NA intron (NM_001286616, intron 13 of 26) intron (NM_001286616, intron 13 of 26) 150612 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 11523 chr16 68237837 68237872 + 0 NA Intergenic CpG-9862 -1621 NM_024939 80004 Hs.436585 NM_024939 ENSG00000103067 ESRP2 RBM35B epithelial splicing regulatory protein 2 protein-coding 22184 chr5 6766722 6766876 + 0 NA Intergenic Intergenic 20811 NM_001171806 11044 Hs.481542 NM_006999 ENSG00000112941 PAPD7 LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 poly(A) RNA polymerase D7, non-canonical protein-coding 28945 chr9 15552894 15553017 + 0 NA promoter-TSS (NM_173550) promoter-TSS (NM_173550) -52 NM_173550 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 8912 chr14 38105243 38105383 + 0 NA Intergenic HERV17-int|LTR|ERV1 -102686 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 5301 chr11 58788481 58788565 + 0 NA Intergenic L1PA15-16|LINE|L1 56001 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 18380 chr20 62238279 62238412 + 0 NA promoter-TSS (NM_001278649) promoter-TSS (NM_001278649) -140 NM_014835 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 17788 chr20 23629228 23629358 + 0 NA 3' UTR (NM_001288614, exon 4 of 4) 3' UTR (NM_001288614, exon 4 of 4) 8755 NM_000099 1471 Hs.304682 NM_000099 ENSG00000101439 CST3 ARMD11|HEL-S-2 cystatin C protein-coding 28060 chr8 78665994 78666162 + 0 NA promoter-TSS (NM_016010) promoter-TSS (NM_016010) 31 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 18552 chr21 41727100 41727215 + 0 NA Intergenic Intergenic 10721 NR_024028 54089 Hs.98186 NR_024028 ENSG00000232401 LINC00112 C21orf22|NCRNA00112 long intergenic non-protein coding RNA 112 ncRNA 9722 chr14 103354598 103354702 + 0 NA Intergenic Intergenic 16801 NR_002964 677811 Hs.658237 NR_002964 ENSG00000272533 SNORA28 ACA28 small nucleolar RNA, H/ACA box 28 snoRNA 4956 chr11 18322094 18322283 + 0 NA promoter-TSS (NM_007216) promoter-TSS (NM_007216) -14 NM_007216 11234 Hs.437599 NM_007216 ENSG00000110756 HPS5 AIBP63|BLOC2S2 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 protein-coding 23604 chr5 157859039 157859190 + 0 NA promoter-TSS (NM_001195555) promoter-TSS (NM_001195555) 61 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 21899 chr4 151016074 151016217 + 0 NA promoter-TSS (NM_001199282) promoter-TSS (NM_001199282) -648 NM_006726 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 7049 chr12 53054428 53054532 + 0 NA promoter-TSS (NR_033854) promoter-TSS (NR_033854) -42 NR_033854 283335 Hs.657060 NR_033854 ENSG00000257337 LOC283335 - uncharacterized LOC283335 ncRNA 28980 chr9 21684877 21685014 + 0 NA Intergenic Intergenic -117691 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 19949 chr3 116905977 116906050 + 0 NA Intergenic Intergenic -15418 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 17237 chr2 229408509 229408721 + 0 NA intron (NM_139072, intron 9 of 12) intron (NM_139072, intron 9 of 12) -137274 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 24223 chr6 26189040 26189154 + 0 NA promoter-TSS (NM_003539) promoter-TSS (NM_003539) -21 NM_003539 8360 Hs.248179 NM_003539 ENSG00000277157 HIST1H4D H4/b|H4FB|dJ221C16.9 histone cluster 1 H4 family member d protein-coding 30955 chrX 108396577 108396592 + 0 NA intron (NM_033641, intron 2 of 44) intron (NM_033641, intron 2 of 44) 41846 NM_001287760 1288 Hs.145586 NM_001847 ENSG00000197565 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen type IV alpha 6 chain protein-coding 23047 chr5 115296556 115296660 + 0 NA promoter-TSS (NM_152549) promoter-TSS (NM_152549) 153 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 30088 chr9 124659176 124659302 + 0 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) 803 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 12557 chr17 44141847 44141866 + 0 NA promoter-TSS (NM_001321310) promoter-TSS (NM_001321310) -46 NM_024032 78995 Hs.437059 NM_024032 ENSG00000125319 C17orf53 - chromosome 17 open reading frame 53 protein-coding 16005 chr2 99066695 99066827 + 0 NA intron (NM_025244, intron 15 of 20) intron (NM_025244, intron 15 of 20) 74813 NM_182911 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79 testis specific 10 protein-coding 12560 chr17 44326914 44327018 + 0 NA Intergenic Intergenic -2096 NM_001321240 51629 Hs.744880 NM_016016 ENSG00000013306 SLC25A39 CGI-69|CGI69 solute carrier family 25 member 39 protein-coding 22127 chr4 189143450 189143523 + 0 NA Intergenic LTR16E2|LTR|ERVL -516120 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 27315 chr8 1755663 1755788 + 0 NA Intergenic Intergenic 7609 NR_134302 101927752 Hs.356690 NR_134302 ENSG00000253982 LOC101927752 - uncharacterized LOC101927752 ncRNA 22940 chr5 97534420 97534445 + 0 NA intron (NR_105028, intron 2 of 3) L1MB2|LINE|L1 29736 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 15559 chr2 54600144 54600248 + 0 NA intron (NM_003128, intron 3 of 35) intron (NM_003128, intron 3 of 35) 41802 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 29236 chr9 73151735 73151874 + 0 NA promoter-TSS (NM_000700) promoter-TSS (NM_000700) 73 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 12196 chr17 19378279 19378429 + 0 NA promoter-TSS (NM_002749) promoter-TSS (NM_002749) -107 NM_139034 5598 Hs.150136 NM_002749 ENSG00000166484 MAPK7 BMK1|ERK4|ERK5|PRKM7 mitogen-activated protein kinase 7 protein-coding 13488 chr18 45353698 45353802 + 0 NA intron (NM_001242692, intron 1 of 20) intron (NM_001242692, intron 1 of 20) 140768 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 2307 chr1 197787209 197787313 + 0 NA Intergenic Intergenic -11768 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 28659 chr8 128258651 128258755 + 0 NA Intergenic Intergenic 108587 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 25337 chr6 150720847 150721000 + 0 NA promoter-TSS (NM_001329802) promoter-TSS (NM_001329802) -10 NM_001329802 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 23905 chr6 3363395 3363528 + 0 NA intron (NM_001286456, intron 3 of 3) intron (NM_001286456, intron 3 of 3) 81552 NR_104448 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 22697 chr5 71601762 71601866 + 0 NA intron (NM_022132, intron 4 of 16) intron (NM_022132, intron 4 of 16) 14526 NM_022132 64087 Hs.604789 NM_022132 ENSG00000131844 MCCC2 MCCB methylcrotonoyl-CoA carboxylase 2 protein-coding 2706 chr1 218380535 218380639 + 0 NA intron (NM_001135599, intron 2 of 7) intron (NM_001135599, intron 2 of 7) -34909 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 12468 chr17 40560378 40560470 + 0 NA promoter-TSS (NM_001301718) promoter-TSS (NM_001301718) -30 NM_001301718 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 6609 chr12 11878304 11878445 + 0 NA intron (NM_001987, intron 5 of 7) intron (NM_001987, intron 5 of 7) -192570 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 9200 chr14 64503714 64503882 + 0 NA promoter-TSS (NM_001123329) promoter-TSS (NM_001123329) 47 NM_006977 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 7826 chr12 123250955 123251113 + 0 NA intron (NM_001194995, intron 1 of 2) L1PBa1|LINE|L1 17220 NM_001270434 8099 Hs.433201 NM_004642 ENSG00000111328 CDK2AP1 DOC1|DORC1|ST19|doc-1|p12DOC-1 cyclin dependent kinase 2 associated protein 1 protein-coding 5973 chr11 102347236 102347340 + 0 NA promoter-TSS (NM_001256163) promoter-TSS (NM_001256163) -86 NM_001256163 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 30202 chr9 128829771 128829920 + 0 NA promoter-TSS (NM_016390) promoter-TSS (NM_016390) -24 NM_016390 51490 Hs.224137 NM_016390 ENSG00000198917 SPOUT1 C9orf114|CENP-32|HSPC109 SPOUT domain containing methyltransferase 1 protein-coding 20162 chr3 132035017 132035184 + 0 NA 5' UTR (NM_130808, exon 1 of 16) 5' UTR (NM_130808, exon 1 of 16) 342 NM_130808 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 27004 chr7 130205405 130205557 + 0 NA promoter-TSS (NM_001301163) promoter-TSS (NM_001301163) 17 NM_032842 84928 Hs.267245 NM_032842 ENSG00000146842 TMEM209 NET31 transmembrane protein 209 protein-coding 18831 chr22 35350819 35351009 + 0 NA Intergenic Intergenic -14115 NR_106717 102464824 NR_106717 ENSG00000274280 MIR6069 hsa-mir-6069 microRNA 6069 ncRNA 18556 chr21 41786750 41786825 + 0 NA Intergenic Intergenic -19698 NM_020639 54101 Hs.517310 NM_020639 ENSG00000183421 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor interacting serine/threonine kinase 4 protein-coding 26659 chr7 98133638 98133742 + 0 NA intron (NM_014916, intron 1 of 13) intron (NM_014916, intron 1 of 13) 26805 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 25324 chr6 149963876 149963972 + 0 NA promoter-TSS (NM_025218) promoter-TSS (NM_025218) -50 NM_001317089 80329 Hs.653255 NM_025218 ENSG00000111981 ULBP1 N2DL-1|NKG2DL1|RAET1I UL16 binding protein 1 protein-coding 19575 chr3 56926896 56927000 + 0 NA intron (NM_001128615, intron 3 of 12) intron (NM_001128615, intron 3 of 12) -10477 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 5502 chr11 65919247 65919400 + 0 NA promoter-TSS (NM_006442) promoter-TSS (NM_006442) 66 NM_006442 10589 Hs.356742 NM_006442 ENSG00000175550 DRAP1 NC2-alpha DR1 associated protein 1 protein-coding 2133 chr1 178542746 178542775 + 0 NA promoter-TSS (NR_033186) promoter-TSS (NR_033186) -36 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 ncRNA 11210 chr16 30089983 30090107 + 0 NA intron (NM_004608, intron 3 of 8) MIRc|SINE|MIR 1839 NM_004608 6911 Hs.198301 NM_004608 ENSG00000149922 TBX6 SCDO5 T-box 6 protein-coding 13505 chr18 46160231 46160311 + 0 NA Intergenic Intergenic -13751 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 24990 chr6 108713121 108713183 + 0 NA Intergenic Intergenic -38502 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 8312 chr13 59658347 59658348 + 0 NA Intergenic Intergenic -354371 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 26380 chr7 70669137 70669241 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -463348 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 4969 chr11 19071410 19071514 + 0 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -10781 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 28255 chr8 97519680 97519784 + 0 NA Intergenic Charlie15a|DNA|hAT-Charlie -73235 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 14073 chr19 10380620 10380646 + 0 NA promoter-TSS (NM_003331) promoter-TSS (NM_003331) -61 NM_003331 7297 Hs.75516 NM_003331 ENSG00000105397 TYK2 IMD35|JTK1 tyrosine kinase 2 protein-coding 6529 chr12 6735902 6735973 + 0 NA Intergenic L1MD2|LINE|L1 11654 NM_001164093 50813 Hs.530823 NM_016319 ENSG00000111652 COPS7A CSN7|CSN7A|SGN7a COP9 signalosome subunit 7A protein-coding 4722 chr11 4464339 4464443 + 0 NA Intergenic LTR10B2|LTR|ERV1 15096 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 16374 chr2 137168645 137168853 + 0 NA intron (NM_001316349, intron 6 of 27) intron (NM_001316349, intron 6 of 27) 403187 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 3487 chr10 28381886 28382022 + 0 NA Intergenic Intergenic -78888 NR_134518 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 13894 chr19 2269298 2269402 + 0 NA promoter-TSS (NM_001301020) promoter-TSS (NM_001301020) -136 NM_001301020 4946 Hs.446427 NM_004152 ENSG00000104904 OAZ1 AZI|OAZ ornithine decarboxylase antizyme 1 protein-coding 12572 chr17 45061155 45061296 + 0 NA promoter-TSS (NM_001288654) promoter-TSS (NM_001288654) -74 NM_021079 4836 Hs.532790 NM_021079 ENSG00000136448 NMT1 NMT N-myristoyltransferase 1 protein-coding 24819 chr6 79270133 79270135 + 0 NA Intergenic Intergenic -35396 NM_004242 9324 Hs.77558 NM_004242 ENSG00000118418 HMGN3 PNAS-24|PNAS-25|TRIP7 high mobility group nucleosomal binding domain 3 protein-coding 23104 chr5 122727324 122727428 + 0 NA intron (NR_109881, intron 2 of 11) intron (NR_109881, intron 2 of 11) 3184 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LOC101927379 - uncharacterized LOC101927379 ncRNA 19660 chr3 71688263 71688367 + 0 NA intron (NM_001134650, intron 7 of 7) intron (NM_001134650, intron 7 of 7) 37060 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 4662 chr11 518633 518764 + 0 NA Intergenic CpG -11415 NM_203387 6050 Hs.530687 NM_002939 ENSG00000023191 RNH1 RAI|RNH ribonuclease/angiogenin inhibitor 1 protein-coding 6033 chr11 108616706 108616884 + 0 NA Intergenic Intergenic -23057 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 15892 chr2 84971126 84971230 + 0 NA promoter-TSS (NM_020122) promoter-TSS (NM_020122) 70 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 926 chr1 56517021 56517153 + 0 NA intron (NM_003713, intron 4 of 5) UCON35|Unknown|Unknown 62497 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 27892 chr8 58553130 58553249 + 0 NA promoter-TSS (NM_005625) promoter-TSS (NM_005625) 20 NM_005625 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 15356 chr2 37156952 37157056 + 0 NA promoter-TSS (NM_001135651) promoter-TSS (NM_001135651) 43 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 1083 chr1 67833351 67833468 + 0 NA promoter-TSS (NM_018841) promoter-TSS (NM_018841) 63 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 28262 chr8 97868920 97869024 + 0 NA promoter-TSS (NM_030583) promoter-TSS (NM_030583) -49 NM_030583 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 11692 chr16 79628596 79628700 + 0 NA Intergenic Intergenic -27923 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 27759 chr8 43056286 43056321 + 0 NA promoter-TSS (NR_033698) promoter-TSS (NR_033698) 4 NM_002027 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 25696 chr7 12731438 12731542 + 0 NA Intergenic Intergenic 44204 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 6137 chr11 117144182 117144325 + 0 NA promoter-TSS (NM_001309431) promoter-TSS (NM_001309431) -31 NR_110268 5049 Hs.728488 NM_002572 ENSG00000168092 PAFAH1B2 HEL-S-303 platelet activating factor acetylhydrolase 1b catalytic subunit 2 protein-coding 3024 chr1 236083880 236083984 + 0 NA Intergenic Intergenic -18751 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 1792 chr1 154608162 154608306 + 0 NA promoter-TSS (NM_001111) promoter-TSS (NM_001111) 14 NM_015840 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding 25063 chr6 117675316 117675502 + 0 NA promoter-TSS (NM_138459) promoter-TSS (NM_138459) -45 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 25037 chr6 113971360 113971485 + 0 NA promoter-TSS (NR_073443) promoter-TSS (NR_073443) -227 NR_033441 3066 Hs.3352 NM_001527 ENSG00000196591 HDAC2 HD2|RPD3|YAF1 histone deacetylase 2 protein-coding 23953 chr6 6811451 6811544 + 0 NA Intergenic Intergenic -188671 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 8894 chr14 36944760 36944864 + 0 NA intron (NM_030631, intron 1 of 9) intron (NM_030631, intron 1 of 9) 7579 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 662 chr1 38138679 38138783 + 0 NA Intergenic Intergenic 49500 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 23363 chr5 141004198 141004465 + 0 NA intron (NM_018898, intron 3 of 3) intron (NM_018898, intron 3 of 3) 37564 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 30186 chr9 128455939 128456108 + 0 NA promoter-TSS (NM_001242354) promoter-TSS (NM_001242354) 17 NM_001242352 4957 Hs.129055 NM_002540 ENSG00000136811 ODF2 CT134|ODF2/1|ODF2/2|ODF84 outer dense fiber of sperm tails 2 protein-coding 30004 chr9 118609591 118609695 + 0 NA Intergenic Intergenic 759818 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 27196 chr7 149028638 149028728 + 0 NA promoter-TSS (NM_004911) promoter-TSS (NM_004911) 7 NM_004911 9601 Hs.93659 NM_004911 ENSG00000155660 PDIA4 ERP70|ERP72|ERp-72 protein disulfide isomerase family A member 4 protein-coding 6180 chr11 119018472 119018504 + 0 NA promoter-TSS (NM_001028) promoter-TSS (NM_001028) 19 NM_001318494 51399 Hs.132760 NM_016146 ENSG00000196655 TRAPPC4 CGI-104|HSPC172|PTD009|SBDN|SYNBINDIN|TRS23 trafficking protein particle complex 4 protein-coding 22473 chr5 43556791 43556941 + 0 NA 5' UTR (NM_006451, exon 1 of 11) 5' UTR (NM_006451, exon 1 of 11) 227 NM_182789 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 10867 chr16 1722250 1722382 + 0 NA intron (NM_001318852, intron 1 of 31) intron (NM_001318852, intron 1 of 31) -12669 NR_036138 100423012 NR_036138 ENSG00000265820 MIR3177 mir-3177 microRNA 3177 ncRNA 10030 chr15 45634843 45634947 + 0 NA 5' UTR (NM_021199, exon 1 of 10) 5' UTR (NM_021199, exon 1 of 10) 155 NM_021199 58472 Hs.511251 NM_021199 ENSG00000137767 SQRDL CGI-44|PRO1975|SQOR sulfide quinone reductase-like (yeast) protein-coding 8007 chr13 26914906 26914946 + 0 NA Intergenic Intergenic -154141 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 2728 chr1 219812630 219812734 + 0 NA Intergenic Intergenic 115969 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 16725 chr2 177618639 177618693 + 0 NA exon (NM_152275, exon 1 of 1) exon (NM_152275, exon 1 of 1) 300 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A tetratricopeptide repeat domain 30A protein-coding 8594 chr13 109786563 109786714 + 0 NA promoter-TSS (NM_003749) promoter-TSS (NM_003749) -71 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 3439 chr10 24464169 24464341 + 0 NA intron (NM_001321681, intron 1 of 13) intron (NM_001321681, intron 1 of 13) -2250 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 124 chr1 9128937 9128960 + 0 NA exon (NM_024980, exon 1 of 4) exon (NM_024980, exon 1 of 4) 222 NM_024980 80045 Hs.632367 NM_024980 ENSG00000180758 GPR157 - G protein-coupled receptor 157 protein-coding 25585 chr7 4684034 4684138 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 1787 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 27939 chr8 63168527 63168660 + 0 NA promoter-TSS (NR_102684) promoter-TSS (NR_102684) -34 NM_001277817 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 9821 chr15 31397365 31397492 + 0 NA intron (NM_001302461, intron 1 of 1) CpG 70573 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1429 chr1 106620704 106620836 + 0 NA Intergenic MER52A|LTR|ERV1 -435875 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 16289 chr2 127886339 127886483 + 0 NA promoter-TSS (NM_001199140) promoter-TSS (NM_001199140) -471 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 15518 chr2 48106775 48106909 + 0 NA Intergenic Intergenic -201049 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 11836 chr16 88765097 88765229 + 0 NA intron (NM_001142864, intron 1 of 50) intron (NM_001142864, intron 1 of 50) 20057 NM_001142864 9780 Hs.377001 NM_001142864 ENSG00000103335 PIEZO1 DHS|FAM38A|LMPH3|Mib piezo type mechanosensitive ion channel component 1 protein-coding 11742 chr16 82170187 82170330 + 0 NA promoter-TSS (NM_005792) promoter-TSS (NM_005792) -34 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 4259 chr10 102503816 102503920 + 0 NA promoter-TSS (NM_001178133) promoter-TSS (NM_001178133) -94 NM_001178133 51684 Hs.404089 NM_016169 ENSG00000107882 SUFU PRO1280|SUFUH|SUFUXL SUFU negative regulator of hedgehog signaling protein-coding 25103 chr6 125124339 125124472 + 0 NA Intergenic L1PBa1|LINE|L1 -29324 NM_001003397 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 tumor protein D52-like 1 protein-coding 29437 chr9 86127465 86127593 + 0 NA promoter-TSS (NR_110996) promoter-TSS (NR_110996) -11 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 17606 chr20 11230043 11230147 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR 43288 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 3611 chr10 43138326 43138446 + 0 NA promoter-TSS (NM_018590) promoter-TSS (NM_018590) -59 NR_135077 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 2483 chr1 205493366 205493470 + 0 NA Intergenic Intergenic -11138 NM_212503 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 9480 chr14 81655747 81655851 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -32738 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 30104 chr9 125200426 125200574 + 0 NA promoter-TSS (NR_135145) promoter-TSS (NR_135145) -42 NM_001174153 10244 Hs.19012 NM_005833 ENSG00000136933 RABEPK RAB9P40|bA65N13.1|p40 Rab9 effector protein with kelch motifs protein-coding 22153 chr5 1645059 1645163 + 0 NA Intergenic CpG -11106 NR_003713 728613 Hs.720393 NR_003713 LOC728613 - programmed cell death 6 pseudogene pseudo 11699 chr16 80027193 80027343 + 0 NA Intergenic Intergenic 232019 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 29645 chr9 97412073 97412177 + 0 NA 5' UTR (NM_001302884, exon 1 of 16) 5' UTR (NM_001302884, exon 1 of 16) 105 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 11386 chr16 55656050 55656117 + 0 NA promoter-TSS (NM_001043) promoter-TSS (NM_001043) -357 NM_001043 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 21257 chr4 25173649 25173753 + 0 NA intron (NR_037934, intron 1 of 1) intron (NR_037934, intron 1 of 1) 13029 NR_037934 285540 Hs.732278 NR_037934 SEPSECS-AS1 - SEPSECS antisense RNA 1 (head to head) ncRNA 10507 chr15 78872812 78872956 + 0 NA promoter-TSS (NM_001265605) promoter-TSS (NM_001265605) 103 NM_206839 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 17841 chr20 31573002 31573106 + 0 NA intron (NR_046853, intron 1 of 2) GA-rich|Low_complexity|Low_complexity 209 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 24490 chr6 37244978 37245131 + 0 NA intron (NM_001286401, intron 1 of 2) MLT1H|LTR|ERVL-MaLR 12583 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 25951 chr7 29256098 29256279 + 0 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -47218 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 6694 chr12 15978763 15978867 + 0 NA intron (NM_001300779, intron 5 of 7) intron (NM_001300779, intron 5 of 7) 67643 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 22756 chr5 76818817 76818945 + 0 NA promoter-TSS (NM_005242) promoter-TSS (NM_005242) -96 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 7222 chr12 64452015 64452121 + 0 NA promoter-TSS (NM_013254) promoter-TSS (NM_013254) 8 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|NAK|T2K TANK binding kinase 1 protein-coding 29085 chr9 35906097 35906157 + 0 NA promoter-TSS (NM_001039792) promoter-TSS (NM_001039792) -65 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 25669 chr7 8262127 8262153 + 0 NA promoter-TSS (NR_125740) promoter-TSS (NR_125740) -85 NR_125740 100505938 Hs.729535 NR_125740 LOC100505938 - uncharacterized LOC100505938 ncRNA 9627 chr14 96391811 96391846 + 0 NA promoter-TSS (NM_152327) promoter-TSS (NM_152327) -283 NM_152327 122481 Hs.667462 NM_152327 ENSG00000140057 AK7 AK 7 adenylate kinase 7 protein-coding 30117 chr9 125746147 125746251 + 0 NA promoter-TSS (NR_122032) promoter-TSS (NR_122032) -270 NR_122032 51145 Hs.104671 NM_016158 LOC51145 - uncharacterized LOC51145 ncRNA 15807 chr2 73386163 73386196 + 0 NA exon (NM_015120, exon 1 of 23) exon (NM_015120, exon 1 of 23) 421 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1, centrosome and basal body associated protein protein-coding 10192 chr15 59256132 59256259 + 0 NA intron (NM_004998, intron 4 of 27) intron (NM_004998, intron 4 of 27) 49379 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 27684 chr8 37695123 37695275 + 0 NA promoter-TSS (NM_025069) promoter-TSS (NM_025069) -552 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 4360 chr10 111211855 111211865 + 0 NA Intergenic L1MC3|LINE|L1 134828 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 3823 chr10 69438652 69438827 + 0 NA Intergenic Intergenic -12731 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 17124 chr2 219388433 219388513 + 0 NA promoter-TSS (NM_001319119) promoter-TSS (NM_001319119) 403 NM_001319121 23549 Hs.258551 NM_012100 ENSG00000123992 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 27346 chr8 8288614 8288742 + 0 NA Intergenic Intergenic 60108 NR_024363 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 25405 chr6 157381129 157381222 + 0 NA promoter-TSS (NM_024630) promoter-TSS (NM_024630) -350 NM_153746 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 23599 chr5 157607455 157607523 + 0 NA Intergenic MIR3|SINE|MIR -31666 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 14158 chr19 13162793 13162936 + 0 NA Intergenic CpG 12396 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 25712 chr7 13990433 13990537 + 0 NA promoter-TSS (NM_001163147) promoter-TSS (NM_001163147) 217 NR_120445 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 8198 chr13 44435312 44435464 + 0 NA intron (NM_001243797, intron 2 of 2) CpG 1536 NM_006022 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 2500 chr1 206470010 206470097 + 0 NA promoter-TSS (NM_001193321) promoter-TSS (NM_001193321) -190 NM_001193321 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon protein-coding 16399 chr2 142596738 142596812 + 0 NA Intergenic L1MA5|LINE|L1 -280851 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 3162 chr1 248838995 248839099 + 0 NA intron (NM_024836, intron 1 of 3) CpG 869 NM_024836 79894 Hs.521151 NM_024836 ENSG00000171161 ZNF672 - zinc finger protein 672 protein-coding 26454 chr7 76379996 76380113 + 0 NA Intergenic CpG -17470 NM_007155 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 19755 chr3 99901484 99901591 + 0 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -25334 NM_001282793 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 351 chr1 23555063 23555167 + 0 NA Intergenic CpG 4679 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 12294 chr17 29761490 29761620 + 0 NA promoter-TSS (NM_001282131) promoter-TSS (NM_001282131) -123 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 8691 chr14 21913953 21914015 + 0 NA Intergenic Intergenic -242967 NM_001317107 26687 NM_001317107 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 17331 chr2 236691909 236692090 + 0 NA Intergenic Intergenic 122262 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 11018 chr16 11345306 11345413 + 0 NA promoter-TSS (NM_152308) promoter-TSS (NM_152308) -79 NR_130754 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 26794 chr7 106780044 106780148 + 0 NA Intergenic MER115|DNA|hAT-Tip100 -85182 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 6337 chr11 129364266 129364332 + 0 NA Intergenic CpG -11687 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 22664 chr5 67248791 67248974 + 0 NA Intergenic Intergenic -52093 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 21027 chr3 194769160 194769264 + 0 NA intron (NR_037891, intron 3 of 3) intron (NR_037891, intron 3 of 3) 60791 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 24834 chr6 80128575 80128679 + 0 NA intron (NR_134945, intron 2 of 10) intron (NR_134945, intron 2 of 10) 22017 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 20607 chr3 169172703 169172807 + 0 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -25021 NM_001164000 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 9127 chr14 60249730 60249834 + 0 NA intron (NM_021003, intron 1 of 5) CpG 534 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 16872 chr2 196696548 196696652 + 0 NA intron (NM_001080539, intron 14 of 27) intron (NM_001080539, intron 14 of 27) 16412 NR_034036 100130452 Hs.591625 NR_034036 LOC100130452 - uncharacterized LOC100130452 ncRNA 18441 chr21 26843028 26843132 + 0 NA intron (NM_006988, intron 1 of 8) intron (NM_006988, intron 1 of 8) 2329 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 1498 chr1 110487863 110487967 + 0 NA non-coding (NR_108042, exon 2 of 2) non-coding (NR_108042, exon 2 of 2) 2343 NR_108042 440602 Hs.708945 NR_108042 ENSG00000235407 CYMP-AS1 - CYMP antisense RNA 1 ncRNA 13254 chr18 9334801 9334851 + 0 NA promoter-TSS (NM_020648) promoter-TSS (NM_020648) 59 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 6863 chr12 38316651 38316791 + 0 NA promoter-TSS (NM_001013620) promoter-TSS (NM_001013620) -34 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 16726 chr2 177618729 177618785 + 0 NA 5' UTR (NM_152275, exon 1 of 1) 5' UTR (NM_152275, exon 1 of 1) 209 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A tetratricopeptide repeat domain 30A protein-coding 13590 chr18 51343028 51343149 + 0 NA Intergenic Charlie7|DNA|hAT-Charlie -48954 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 26712 chr7 100705909 100706060 + 0 NA promoter-TSS (NM_005837) promoter-TSS (NM_005837) -69 NM_005837 10248 Hs.416994 NM_005837 ENSG00000172336 POP7 0610037N12Rik|RPP2|RPP20 POP7 homolog, ribonuclease P/MRP subunit protein-coding 18544 chr21 39313520 39313624 + 0 NA promoter-TSS (NR_111942) promoter-TSS (NR_111942) 214 NM_001007246 54014 Hs.627139 NM_018963 ENSG00000185658 BRWD1 C21orf107|DCAF19|N143|WDR9 bromodomain and WD repeat domain containing 1 protein-coding 11052 chr16 15094335 15094439 + 0 NA promoter-TSS (NM_018427) promoter-TSS (NM_018427) -24 NR_125434 100505915 Hs.678758 NR_125434 ENSG00000260735 LOC100505915 - uncharacterized LOC100505915 ncRNA 21207 chr4 15913697 15913841 + 0 NA Intergenic Intergenic 24971 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 16637 chr2 170715283 170715387 + 0 NA promoter-TSS (NR_027433) promoter-TSS (NR_027433) -12 NM_001003845 389058 Hs.368802 NM_001003845 ENSG00000204335 SP5 - Sp5 transcription factor protein-coding 28102 chr8 81686280 81686416 + 0 NA promoter-TSS (NM_005536) promoter-TSS (NM_005536) 6 NM_005536 3612 Hs.656694 NM_005536 ENSG00000133731 IMPA1 IMP|IMPA inositol monophosphatase 1 protein-coding 16939 chr2 202780812 202780916 + 0 NA intron (NM_138468, intron 13 of 13) MIRc|SINE|MIR 48370 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 14375 chr19 35648095 35648221 + 0 NA promoter-TSS (NM_001863) promoter-TSS (NM_001863) -65 NM_001863 1340 Hs.431668 NM_001863 ENSG00000126267 COX6B1 COX6B|COXG|COXVIb1 cytochrome c oxidase subunit 6B1 protein-coding 8322 chr13 62643161 62643215 + 0 NA Intergenic LTR10F|LTR|ERV1 153504 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 18081 chr20 45071463 45071567 + 0 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 29597 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 10921 chr16 3235148 3235252 + 0 NA promoter-TSS (NM_001145447) promoter-TSS (NM_001145447) -14 NM_003454 7752 Hs.632222 NM_003454 ENSG00000010539 ZNF200 - zinc finger protein 200 protein-coding 21414 chr4 67713999 67714103 + 0 NA intron (NR_015439, intron 1 of 1) intron (NR_015439, intron 1 of 1) 12773 NR_015439 550112 Hs.479879 NR_015439 ENSG00000248049 UBA6-AS1 - UBA6 antisense RNA 1 (head to head) ncRNA 7032 chr12 52520377 52520531 + 0 NA promoter-TSS (NM_000424) promoter-TSS (NM_000424) 5 NM_000424 3852 Hs.433845 NM_000424 ENSG00000186081 KRT5 CK5|DDD|DDD1|EBS2|K5|KRT5A keratin 5 protein-coding 3664 chr10 49419125 49419279 + 0 NA Intergenic MIRc|SINE|MIR -23186 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 19807 chr3 105823568 105823672 + 0 NA intron (NR_135810, intron 3 of 20) intron (NR_135810, intron 3 of 20) 43971 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 10377 chr15 70475115 70475257 + 0 NA Intergenic Intergenic 111420 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LOC101929151 - uncharacterized LOC101929151 ncRNA 18290 chr20 56392377 56392481 + 0 NA promoter-TSS (NM_001324) promoter-TSS (NM_001324) 58 NM_001033521 1477 Hs.172865 NM_001324 ENSG00000101138 CSTF1 CstF-50|CstFp50 cleavage stimulation factor subunit 1 protein-coding 16534 chr2 159638144 159638181 + 0 NA Intergenic L1M1|LINE|L1 -21561 NM_013450 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 10433 chr15 74127655 74127787 + 0 NA non-coding (NR_027073, exon 2 of 2) non-coding (NR_027073, exon 2 of 2) 1557 NR_027073 283731 Hs.631696 NR_027073 ENSG00000248540 LOC283731 - uncharacterized LOC283731 ncRNA 3108 chr1 244273963 244274067 + 0 NA Intergenic Intergenic -78620 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 25330 chr6 150251038 150251142 + 0 NA TTS (NM_030949) TTS (NM_030949) 108038 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 25937 chr7 28020435 28020511 + 0 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -159984 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 10821 chr15 101168295 101168399 + 0 NA Intergenic Intergenic 83585 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 11753 chr16 83802205 83802305 + 0 NA intron (NR_120308, intron 2 of 2) intron (NR_120308, intron 2 of 2) 1721 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 2753 chr1 221478172 221478324 + 0 NA Intergenic Intergenic -141952 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 16782 chr2 185583559 185583722 + 0 NA Intergenic L1M1|LINE|L1 155079 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 LOC101927196 - uncharacterized LOC101927196 ncRNA 2461 chr1 204438751 204438891 + 0 NA intron (NM_002646, intron 24 of 33) intron (NM_002646, intron 24 of 33) -27004 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 22484 chr5 49599555 49599709 + 0 NA Intergenic BSR/Beta|Satellite|Satellite 841768 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 14563 chr19 45507337 45507454 + 0 NA promoter-TSS (NM_003370) promoter-TSS (NM_003370) -35 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator-stimulated phosphoprotein protein-coding 10636 chr15 87369368 87369472 + 0 NA Intergenic L1PA16|LINE|L1 -207509 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 6880 chr12 40832079 40832183 + 0 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 4193 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 22857 chr5 89878390 89878449 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 138301 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 24576 chr6 42979127 42979298 + 0 NA promoter-TSS (NM_000287) promoter-TSS (NM_000287) 31 NM_000287 5190 Hs.656425 NM_000287 ENSG00000124587 PEX6 HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1 peroxisomal biogenesis factor 6 protein-coding 18513 chr21 36430172 36430316 + 0 NA Intergenic Intergenic 36197 NM_012130 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 7033 chr12 52582972 52583105 + 0 NA Intergenic Intergenic -9213 NM_175053 121391 Hs.660125 NM_175053 ENSG00000170484 KRT74 ADWH|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4 keratin 74 protein-coding 19617 chr3 63673247 63673321 + 0 NA Intergenic Intergenic 20616 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 1734 chr1 152036971 152037075 + 0 NA promoter-TSS (NM_005620) promoter-TSS (NM_005620) 12 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 14133 chr19 12162961 12163136 + 0 NA promoter-TSS (NM_001348013) promoter-TSS (NM_001348013) 1 NM_003437 7695 Hs.479874 NM_003437 ENSG00000196646 ZNF136 pHZ-20 zinc finger protein 136 protein-coding 15911 chr2 85595580 85595726 + 0 NA promoter-TSS (NM_016494) promoter-TSS (NM_016494) -61 NM_016494 51255 Hs.356187 NM_016494 ENSG00000168894 RNF181 HSPC238 ring finger protein 181 protein-coding 3230 chr10 5596155 5596317 + 0 NA promoter-TSS (NR_134491) promoter-TSS (NR_134491) -118 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 28950 chr9 16343567 16343689 + 0 NA Intergenic Intergenic -67315 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13554 chr18 49561936 49562057 + 0 NA promoter-TSS (NM_001308006) promoter-TSS (NM_001308006) -35 NM_006033 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 19966 chr3 118548581 118548685 + 0 NA intron (NR_135547, intron 3 of 3) intron (NR_135547, intron 3 of 3) -93135 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 30107 chr9 125241446 125241467 + 0 NA promoter-TSS (NM_005347) promoter-TSS (NM_005347) -69 NM_005347 3309 Hs.743241 NM_005347 ENSG00000044574 HSPA5 BIP|GRP78|HEL-S-89n|MIF2 heat shock protein family A (Hsp70) member 5 protein-coding 24326 chr6 30571285 30571401 + 0 NA promoter-TSS (NM_001025091) promoter-TSS (NM_001025091) -50 NM_001025091 23 Hs.655285 NM_001090 ENSG00000204574 ABCF1 ABC27|ABC50 ATP binding cassette subfamily F member 1 protein-coding 19771 chr3 101561797 101561897 + 0 NA promoter-TSS (NM_017819) promoter-TSS (NM_017819) 11 NM_017819 54931 Hs.594839 NM_017819 ENSG00000174173 TRMT10C COXPD30|HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding 9387 chr14 75200535 75200694 + 0 NA Intergenic L2a|LINE|L2 -23968 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 2242 chr1 185565429 185565568 + 0 NA intron (NR_110793, intron 2 of 3) L4_A_Mam|LINE|RTE-X 62990 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 15310 chr2 31401632 31401766 + 0 NA intron (NM_000379, intron 3 of 35) intron (NM_000379, intron 3 of 35) 13046 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 26215 chr7 46930456 46930603 + 0 NA Intergenic Intergenic -233407 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 27052 chr7 134646645 134646749 + 0 NA promoter-TSS (NM_199186) promoter-TSS (NM_199186) -82 NM_001724 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM bisphosphoglycerate mutase protein-coding 17427 chr20 543698 543802 + 0 NA promoter-TSS (NM_001895) promoter-TSS (NM_001895) 88 NM_177560 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|CSNK2A3|OCNDS casein kinase 2 alpha 1 protein-coding 644 chr1 37554324 37554428 + 0 NA promoter-TSS (NM_024700) promoter-TSS (NM_024700) -32 NM_024700 79753 Hs.47232 NM_024700 ENSG00000163877 SNIP1 PMRED Smad nuclear interacting protein 1 protein-coding 2477 chr1 205284827 205284931 + 0 NA Intergenic Intergenic 27682 NM_001331034 9911 Hs.6360 NM_014858 ENSG00000133069 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 3360 chr10 17617442 17617513 + 0 NA promoter-TSS (NM_014241) promoter-TSS (NM_014241) -103 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 20919 chr3 189789518 189789672 + 0 NA promoter-TSS (NM_001114982) promoter-TSS (NM_001114982) -65 NM_001114980 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 5308 chr11 59174816 59174902 + 0 NA intron (NM_015177, intron 1 of 8) intron (NM_015177, intron 1 of 8) 2520 NM_015177 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 25201 chr6 137217337 137217414 + 0 NA intron (NM_000416, intron 1 of 6) intron (NM_000416, intron 1 of 6) 2055 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 5275 chr11 57657571 57657732 + 0 NA promoter-TSS (NM_001142597) promoter-TSS (NM_001142597) -93 NM_001142597 10978 Hs.523687 NM_006831 ENSG00000172409 CLP1 HEAB|hClp1 cleavage and polyadenylation factor I subunit 1 protein-coding 18633 chr22 19576909 19577013 + 0 NA Intergenic Intergenic -10122 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 18188 chr20 50496901 50497103 + 0 NA Intergenic L2b|LINE|L2 -13319 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 15205 chr2 26244686 26244698 + 0 NA promoter-TSS (NM_001281513) promoter-TSS (NM_001281513) 34 NM_000182 3030 Hs.516032 NM_000182 ENSG00000084754 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit protein-coding 4185 chr10 98309680 98309767 + 0 NA Intergenic Intergenic -41473 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 1802 chr1 155017469 155017651 + 0 NA TTS (NM_144622) TTS (NM_144622) 14930 NM_001252406 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding 11358 chr16 53434407 53434511 + 0 NA promoter-TSS (NM_001323609) promoter-TSS (NM_001323609) 20 NM_005611 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 2775 chr1 222712487 222712566 + 0 NA promoter-TSS (NM_022831) promoter-TSS (NM_022831) -4 NM_022831 64853 Hs.156625 NM_022831 ENSG00000186063 AIDA C1orf80 axin interactor, dorsalization associated protein-coding 18543 chr21 39312424 39312563 + 0 NA intron (NM_001007246, intron 4 of 4) CpG 1293 NM_001007246 54014 Hs.627139 NM_018963 ENSG00000185658 BRWD1 C21orf107|DCAF19|N143|WDR9 bromodomain and WD repeat domain containing 1 protein-coding 7494 chr12 98491037 98491141 + 0 NA intron (NR_038383, intron 3 of 3) intron (NR_038383, intron 3 of 3) 12766 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LOC643770 - uncharacterized LOC643770 ncRNA 29157 chr9 70054015 70054128 + 0 NA intron (NR_125850, intron 2 of 13) L2b|LINE|L2 10490 NM_153267 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 15049 chr2 13007006 13007110 + 0 NA promoter-TSS (NR_038434) promoter-TSS (NR_038434) -45 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 14130 chr19 11987559 11987663 + 0 NA promoter-TSS (NR_134930) promoter-TSS (NR_134930) -6 NR_134930 101928464 Hs.631643 NR_134927 ENSG00000219665 LOC101928464 - uncharacterized LOC101928464 ncRNA 2273 chr1 192808868 192808968 + 0 NA promoter-TSS (NM_002923) promoter-TSS (NM_002923) -121 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G-protein signaling 2 protein-coding 9207 chr14 64720341 64720483 + 0 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 16004 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 24416 chr6 33418126 33418261 + 0 NA promoter-TSS (NM_001014433) promoter-TSS (NM_001014433) 95 NM_001014837 51596 Hs.520070 NM_015921 ENSG00000112514 CUTA ACHAP|C6orf82 cutA divalent cation tolerance homolog protein-coding 3330 chr10 14954169 14954283 + 0 NA non-coding (NR_110297, exon 1 of 17) non-coding (NR_110297, exon 1 of 17) 206 NM_001033857 64421 Hs.655932 NM_022487 ENSG00000152457 DCLRE1C A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C DNA cross-link repair 1C protein-coding 22608 chr5 61304672 61304811 + 0 NA Intergenic Intergenic -27532 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 17861 chr20 32109417 32109574 + 0 NA promoter-TSS (NM_014742) promoter-TSS (NM_014742) -11 NM_014742 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 19609 chr3 59050060 59050187 + 0 NA promoter-TSS (NM_198463) promoter-TSS (NM_198463) -134 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 14772 chr19 54020316 54020446 + 0 NA Intergenic Intergenic 28093 NM_145814 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium voltage-gated channel auxiliary subunit gamma 6 protein-coding 26786 chr7 106285220 106285357 + 0 NA promoter-TSS (NM_005746) promoter-TSS (NM_005746) -96 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 17674 chr20 16729899 16730043 + 0 NA promoter-TSS (NM_003092) promoter-TSS (NM_003092) 7 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 3231 chr10 5610064 5610149 + 0 NA Intergenic Intergenic -13988 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 11517 chr16 68005926 68006001 + 0 NA Intergenic Intergenic -5377 NR_136706 64174 Hs.372633 NM_022355 ENSG00000167261 DPEP2 MBD2 dipeptidase 2 protein-coding 14361 chr19 34734144 34734264 + 0 NA promoter-TSS (NM_001029997) promoter-TSS (NM_001029997) -371 NM_001029997 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 3646 chr10 47384209 47384338 + 0 NA promoter-TSS (NM_001346932) promoter-TSS (NM_001346932) 65 NM_001346932 118738 Hs.27788 NM_153034 ENSG00000265763 ZNF488 - zinc finger protein 488 protein-coding 29750 chr9 106069385 106069489 + 0 NA Intergenic L2c|LINE|L2 374912 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 25765 chr7 17662023 17662163 + 0 NA Intergenic Intergenic -103184 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 19554 chr3 52897524 52897669 + 0 NA promoter-TSS (NM_001198974) promoter-TSS (NM_001198974) -15 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 TMEM110 STIMATE transmembrane protein 110 protein-coding 14735 chr19 51002603 51002774 + 0 NA promoter-TSS (NM_001281431) promoter-TSS (NM_001281431) -986 NM_001281431 11202 Hs.104570 NM_007196 ENSG00000129455 KLK8 HNP|NP|NRPN|PRSS19|TADG14 kallikrein related peptidase 8 protein-coding 7996 chr13 25771411 25771502 + 0 NA intron (NM_001313741, intron 26 of 35) intron (NM_001313741, intron 26 of 35) 279604 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 4857 chr11 13051463 13051483 + 0 NA Intergenic LTR16A|LTR|ERVL 42050 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 4828 chr11 11451084 11451249 + 0 NA intron (NM_198516, intron 1 of 10) intron (NM_198516, intron 1 of 10) -97809 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 27712 chr8 38924449 38924597 + 0 NA intron (NM_021623, intron 2 of 11) LTR16A2|LTR|ERVL 23288 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing A2 protein-coding 9231 chr14 65411740 65411905 + 0 NA promoter-TSS (NR_038170) promoter-TSS (NR_038170) 795 NR_024334 645431 Hs.713717 NR_024334 FUT8-AS1 - FUT8 antisense RNA 1 ncRNA 2331 chr1 199684752 199684900 + 0 NA Intergenic Intergenic -342776 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 1902 chr1 159916436 159916588 + 0 NA Intergenic Intergenic 7205 NM_001277224 8407 Hs.517168 NM_003564 ENSG00000158710 TAGLN2 HA1756 transgelin 2 protein-coding 7503 chr12 98837442 98837546 + 0 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) 57402 NM_001204079 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 24007 chr6 10195342 10195446 + 0 NA Intergenic Intergenic -216924 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 21275 chr4 30537673 30537777 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -182683 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 10766 chr15 95492477 95492581 + 0 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 59436 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 2001 chr1 166603419 166603562 + 0 NA promoter-TSS (NR_002925) promoter-TSS (NR_002925) -426 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing monooxygenase 9 pseudogene pseudo 4394 chr10 114320801 114320931 + 0 NA intron (NM_032550, intron 5 of 18) intron (NM_032550, intron 5 of 18) 81252 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|NET42 von Willebrand factor A domain containing 2 protein-coding 10510 chr15 78930947 78931104 + 0 NA intron (NM_004390, intron 7 of 11) intron (NM_004390, intron 7 of 11) 14073 NM_004390 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 18198 chr20 50761869 50761929 + 0 NA Intergenic Intergenic 30355 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 26719 chr7 101017588 101017692 + 0 NA promoter-TSS (NR_120519) promoter-TSS (NR_120519) -32 NR_120520 102724094 Hs.571256 NR_120519 ENSG00000227053 LOC102724094 - uncharacterized LOC102724094 ncRNA 4357 chr10 110871780 110871932 + 0 NA promoter-TSS (NM_001199492) promoter-TSS (NM_001199492) 61 NM_001199492 27250 Hs.711490 NM_014456 ENSG00000150593 PDCD4 H731 programmed cell death 4 protein-coding 10291 chr15 65133132 65133281 + 0 NA exon (NM_005707, exon 1 of 5) exon (NM_005707, exon 1 of 5) 630 NM_005707 10081 Hs.458596 NM_005707 ENSG00000090470 PDCD7 ES18|HES18 programmed cell death 7 protein-coding 5796 chr11 86460145 86460249 + 0 NA intron (NM_001014811, intron 7 of 13) intron (NM_001014811, intron 7 of 13) 85461 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 3695 chr10 53111658 53111762 + 0 NA Intergenic L1P2|LINE|L1 -340010 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 22190 chr5 8457385 8457544 + 0 NA promoter-TSS (NR_039984) promoter-TSS (NR_039984) 100 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LOC729506 - uncharacterized LOC729506 ncRNA 22002 chr4 169612579 169612698 + 0 NA promoter-TSS (NM_001199397) promoter-TSS (NM_001199397) -11 NM_001199399 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 12461 chr17 40318106 40318273 + 0 NA promoter-TSS (NM_001145301) promoter-TSS (NM_001145301) -32 NM_001145302 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 30857 chrX 80808122 80808226 + 0 NA intron (NM_153252, intron 4 of 40) intron (NM_153252, intron 4 of 40) 1560 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 14680 chr19 49157732 49157879 + 0 NA promoter-TSS (NM_001321281) promoter-TSS (NM_001321281) 46 NM_017636 54795 Hs.467101 NM_017636 ENSG00000130529 TRPM4 LTrpC4|PFHB1B|TRPM4B|hTRPM4 transient receptor potential cation channel subfamily M member 4 protein-coding 16889 chr2 198296800 198296904 + 0 NA Intergenic Intergenic 78245 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 17183 chr2 224221713 224221817 + 0 NA Intergenic Intergenic 180229 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 24332 chr6 30672898 30672943 + 0 NA 5' UTR (NM_003587, exon 1 of 20).6 5' UTR (NM_003587, exon 1 of 20).6 133 NM_001164239 8449 Hs.485060 NM_003587 ENSG00000204560 DHX16 DBP2|DDX16|PRO2014|PRP8|PRPF2|Prp2 DEAH-box helicase 16 protein-coding 14344 chr19 32675172 32675337 + 0 NA promoter-TSS (NM_032139) promoter-TSS (NM_032139) -58 NM_032139 84079 Hs.59236 NM_032139 ENSG00000105186 ANKRD27 PP12899|VARP ankyrin repeat domain 27 protein-coding 12364 chr17 35245266 35245370 + 0 NA intron (NM_001330183, intron 1 of 3) Tigger7|DNA|TcMar-Tigger 2251 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 26517 chr7 84303085 84303237 + 0 NA Intergenic Intergenic -108260 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 13244 chr18 7335065 7335169 + 0 NA Intergenic Intergenic 103978 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 4669 chr11 695097 695320 + 0 NA promoter-TSS (NM_001042463) promoter-TSS (NM_001042463) -383 NM_001276274 283232 Hs.448664 NM_174940 ENSG00000177042 TMEM80 - transmembrane protein 80 protein-coding 30291 chr9 132028100 132028267 + 0 NA intron (NM_004269, intron 2 of 7) L2a|LINE|L2 51704 NM_001253882 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 22036 chr4 176020694 176020711 + 0 NA Intergenic Intergenic -18011 NM_001261447 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 21123 chr4 2843755 2843871 + 0 NA promoter-TSS (NM_001119) promoter-TSS (NM_001119) -44 NM_001119 118 Hs.183706 NM_001119 ENSG00000087274 ADD1 ADDA adducin 1 protein-coding 10585 chr15 83379631 83379785 + 0 NA Intergenic Intergenic -67520 NM_001324186 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 28891 chr9 4530469 4530576 + 0 NA intron (NM_004170, intron 1 of 11) intron (NM_004170, intron 1 of 11) 40095 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 27698 chr8 38076356 38076510 + 0 NA Intergenic MER4D|LTR|ERV1 -29060 NM_001282272 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like histone lysine methyltransferase complex subunit protein-coding 13955 chr19 4575499 4575603 + 0 NA Intergenic Intergenic -15792 NM_032108 10501 Hs.465642 NM_020241 ENSG00000167680 SEMA6B SEM-SEMA-Y|SEMA-VIB|SEMAN|semaZ semaphorin 6B protein-coding 5173 chr11 36312697 36312776 + 0 NA intron (NM_001160167, intron 1 of 8) MIRb|SINE|MIR 16561 NM_001160167 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 5245 chr11 47214928 47215032 + 0 NA promoter-TSS (NM_000107) promoter-TSS (NM_000107) 38 NM_001300734 1643 Hs.700338 NM_000107 ENSG00000134574 DDB2 DDBB|UV-DDB2|XPE damage specific DNA binding protein 2 protein-coding 26487 chr7 80151067 80151171 + 0 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 15364 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 5453 chr11 65014036 65014167 + 0 NA promoter-TSS (NR_037650) promoter-TSS (NR_037650) -12 NM_001667 402 Hs.502836 NM_001667 ENSG00000213465 ARL2 ARFL2 ADP ribosylation factor like GTPase 2 protein-coding 3171 chr10 988335 988439 + 0 NA promoter-TSS (NM_012341) promoter-TSS (NM_012341) -22 NM_012341 23560 Hs.215766 NM_012341 ENSG00000107937 GTPBP4 CRFG|NGB|NOG1 GTP binding protein 4 protein-coding 427 chr1 26621267 26621371 + 0 NA Intergenic CpG 66777 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 5121 chr11 33736468 33736520 + 0 NA promoter-TSS (NM_000611) promoter-TSS (NM_000611) -15 NM_000611 966 Hs.278573 NM_000611 ENSG00000085063 CD59 16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20 CD59 molecule protein-coding 6593 chr12 10304305 10304350 + 0 NA promoter-TSS (NM_001114396) promoter-TSS (NM_001114396) -124 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 26883 chr7 116690088 116690186 + 0 NA intron (NM_001324402, intron 1 of 19) L3b|LINE|CR1 17747 NM_001324401 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 14528 chr19 44692173 44692277 + 0 NA Intergenic Intergenic -6926 NM_001039213 388551 Hs.456381 NM_001039213 ENSG00000213892 CEACAM16 CEAL2|DFNA4B carcinoembryonic antigen related cell adhesion molecule 16 protein-coding 30198 chr9 128771919 128771996 + 0 NA promoter-TSS (NM_006336) promoter-TSS (NM_006336) -23 NM_006336 10444 Hs.147950 NM_006336 ENSG00000160445 ZER1 C9orf60|ZYG|ZYG11BL zyg-11 related cell cycle regulator protein-coding 82 chr1 6414530 6414716 + 0 NA TTS (NM_019089) TTS (NM_019089) 5296 NM_019089 54626 Hs.118727 NM_019089 ENSG00000069812 HES2 bHLHb40 hes family bHLH transcription factor 2 protein-coding 30594 chrX 29663339 29663399 + 0 NA intron (NM_014271, intron 5 of 10) intron (NM_014271, intron 5 of 10) 89091 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 15078 chr2 15891212 15891316 + 0 NA Intergenic Intergenic -29135 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 13802 chr18 76822062 76822167 + 0 NA promoter-TSS (NM_001306089) promoter-TSS (NM_001306089) 181 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 LOC100131655 - uncharacterized LOC100131655 ncRNA 14686 chr19 49451859 49451954 + 0 NA promoter-TSS (NM_017916) promoter-TSS (NM_017916) -48 NM_017916 55011 Hs.5245 NM_017916 ENSG00000104872 PIH1D1 NOP17 PIH1 domain containing 1 protein-coding 25495 chr6 169425801 169425905 + 0 NA Intergenic Intergenic -171739 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 28470 chr8 117609150 117609196 + 0 NA Intergenic Intergenic 88460 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 13455 chr18 36829017 36829185 + 0 NA promoter-TSS (NM_001322327) promoter-TSS (NM_001322327) -5 NR_136304 57536 Hs.4045 NM_020776 ENSG00000150477 KIAA1328 - KIAA1328 protein-coding 4499 chr10 120851263 120851338 + 0 NA promoter-TSS (NR_033850) promoter-TSS (NR_033850) -121 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 31154 chrX 151789308 151789412 + 0 NA Intergenic Intergenic 54614 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 21439 chr4 73223038 73223179 + 0 NA promoter-TSS (NM_001286771) promoter-TSS (NM_001286771) 6 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 4299 chr10 104232324 104232441 + 0 NA promoter-TSS (NM_025145) promoter-TSS (NM_025145) -5 NM_025145 80217 Hs.288927 NM_025145 ENSG00000197748 CFAP43 C10orf79|WDR96|bA373N18.2 cilia and flagella associated protein 43 protein-coding 26222 chr7 47558131 47558221 + 0 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 23968 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 22070 chr4 182448916 182449069 + 0 NA intron (NM_001080477, intron 3 of 27) CpG 205561 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 11092 chr16 19718236 19718252 + 0 NA promoter-TSS (NM_001012991) promoter-TSS (NM_001012991) -74 NM_001012991 400506 Hs.585209 NM_001012991 ENSG00000103550 KNOP1 101F10.1|C16orf88|FAM191A|TSG118 lysine rich nucleolar protein 1 protein-coding 19406 chr3 42091277 42091338 + 0 NA promoter-TSS (NM_001265608) promoter-TSS (NM_001265608) 53 NM_001265608 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 MILT1|OIP106 trafficking kinesin protein 1 protein-coding 17276 chr2 231781280 231781443 + 0 NA promoter-TSS (NM_001291018) promoter-TSS (NM_001291018) -34 NM_001291018 5147 Hs.516808 NM_002601 ENSG00000156973 PDE6D JBTS22|PDED phosphodiesterase 6D protein-coding 20734 chr3 179148013 179148144 + 0 NA promoter-TSS (NR_125401) promoter-TSS (NR_125401) -105 NR_125401 101928739 Hs.434553 NR_125401 ENSG00000229102 LOC101928739 - uncharacterized LOC101928739 ncRNA 11001 chr16 10594653 10594801 + 0 NA Intergenic Intergenic -14011 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 13899 chr19 2525032 2525158 + 0 NA intron (NM_052847, intron 3 of 4) CpG 48970 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 21112 chr4 1856393 1856398 + 0 NA promoter-TSS (NM_012318) promoter-TSS (NM_012318) -148 NM_012318 3954 Hs.120165 NM_012318 ENSG00000168924 LETM1 - leucine zipper and EF-hand containing transmembrane protein 1 protein-coding 20168 chr3 132417427 132417531 + 0 NA promoter-TSS (NM_015268) promoter-TSS (NM_015268) -181 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 17816 chr20 25309902 25310044 + 0 NA intron (NM_001042472, intron 6 of 12) intron (NM_001042472, intron 6 of 12) 61903 NM_002862 5834 Hs.368157 NM_002862 ENSG00000100994 PYGB GPBB glycogen phosphorylase B protein-coding 17731 chr20 19993039 19993164 + 0 NA intron (NM_018993, intron 9 of 10) intron (NM_018993, intron 9 of 10) -24189 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 15317 chr2 32010857 32010992 + 0 NA promoter-TSS (NR_126032) promoter-TSS (NR_126032) 128 NR_126034 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 426 chr1 26620861 26621004 + 0 NA Intergenic CpG 66390 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 19050 chr22 50148997 50149101 + 0 NA intron (NM_001164106, intron 1 of 8) intron (NM_001164106, intron 1 of 8) 1994 NM_001164106 54456 Hs.62880 NM_018995 ENSG00000073146 MOV10L1 CHAMP|DJ402G11.8 Mov10 RISC complex RNA helicase like 1 protein-coding 9043 chr14 54902283 54902387 + 0 NA exon (NM_000161, exon 1 of 6) exon (NM_000161, exon 1 of 6) 489 NM_001024070 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 23421 chr5 144190092 144190196 + 0 NA intron (NM_020768, intron 2 of 3) L2c|LINE|L2 19271 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 7662 chr12 111685966 111686131 + 0 NA promoter-TSS (NM_001136538) promoter-TSS (NM_001136538) -5 NM_025247 80724 Hs.331141 NM_025247 ENSG00000111271 ACAD10 - acyl-CoA dehydrogenase family member 10 protein-coding 28933 chr9 14238665 14238769 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) -57915 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 1435 chr1 107057330 107057428 + 0 NA exon (NM_018137, exon 1 of 1) exon (NM_018137, exon 1 of 1) 734 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 9519 chr14 88895167 88895271 + 0 NA Intergenic Intergenic 71066 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 27338 chr8 6909733 6909799 + 0 NA Intergenic Intergenic 16310 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin alpha 6 protein-coding 483 chr1 28642990 28643094 + 0 NA promoter-TSS (NM_001135218) promoter-TSS (NM_001135218) 50 NM_001135218 6883 Hs.530251 NM_005644 ENSG00000120656 TAF12 TAF2J|TAFII20 TATA-box binding protein associated factor 12 protein-coding 4145 chr10 96832238 96832356 + 0 NA promoter-TSS (NM_001170766) promoter-TSS (NM_001170766) 37 NM_001170766 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 28059 chr8 78560720 78560824 + 0 NA intron (NM_181839, intron 1 of 2) intron (NM_181839, intron 1 of 2) -2269 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 18799 chr22 31212104 31212233 + 0 NA promoter-TSS (NM_005569) promoter-TSS (NM_005569) -96 NM_005569 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 4698 chr11 2700111 2700234 + 0 NA promoter-TSS (NR_002728) promoter-TSS (NR_002728) -174 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) ncRNA 13892 chr19 2236326 2236466 + 0 NA promoter-TSS (NR_106847) promoter-TSS (NR_106847) -43 NM_018049 55111 Hs.501353 NM_018049 ENSG00000104886 PLEKHJ1 GNRPX pleckstrin homology domain containing J1 protein-coding 1540 chr1 113759420 113759575 + 0 NA promoter-TSS (NM_001323047) promoter-TSS (NM_001323047) 43 NM_001323046 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 7360 chr12 86634850 86634954 + 0 NA intron (NM_013244, intron 1 of 6) MLT1E1A|LTR|ERVL-MaLR 204002 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 3075 chr1 241592441 241592534 + 0 NA TTS (NM_014322) TTS (NM_014322) 43443 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like, Rab escort protein 2 protein-coding 27069 chr7 135923815 135923919 + 0 NA Intergenic Intergenic 53589 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 14938 chr2 6506480 6506548 + 0 NA Intergenic Intergenic 127273 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 14495 chr19 42302423 42302534 + 0 NA 5' UTR (NM_001145939, exon 1 of 6) 5' UTR (NM_001145939, exon 1 of 6) 166 NM_002573 5050 Hs.466831 NM_002573 ENSG00000079462 PAFAH1B3 PAFAHG platelet activating factor acetylhydrolase 1b catalytic subunit 3 protein-coding 21855 chr4 143513350 143513454 + 0 NA promoter-TSS (NM_003601) promoter-TSS (NM_003601) -61 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 22777 chr5 79495495 79495576 + 0 NA intron (NM_004272, intron 1 of 8) L2c|LINE|L2 18301 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffolding protein 1 protein-coding 7983 chr13 24669070 24669174 + 0 NA Intergenic Intergenic -11289 NM_001676 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A #945|ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 4767 chr11 7612875 7612993 + 0 NA intron (NM_001256569, intron 2 of 19) intron (NM_001256569, intron 2 of 19) 7200 NM_001256569 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 26892 chr7 117435608 117435737 + 0 NA Intergenic Intergenic -8149 NM_001301821 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 19429 chr3 44648626 44648730 + 0 NA promoter-TSS (NM_003420) promoter-TSS (NM_003420) -63 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 19884 chr3 112097521 112097674 + 0 NA intron (NM_001171747, intron 2 of 3) intron (NM_001171747, intron 2 of 3) 11262 NM_024616 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 18454 chr21 29181869 29181973 + 0 NA Intergenic Intergenic -11573 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 13469 chr18 42192988 42193092 + 0 NA intron (NR_046455, intron 1 of 4) MER44B|DNA|TcMar-Tigger 6372 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 11687 chr16 78235240 78235344 + 0 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 135879 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 5218 chr11 45293688 45293792 + 0 NA Intergenic Intergenic -7407 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 7758 chr12 120581425 120581529 + 0 NA promoter-TSS (NM_015918) promoter-TSS (NM_015918) -79 NM_198202 51367 Hs.279913 NM_015918 ENSG00000167272 POP5 HSPC004|RPP2|RPP20|hPop5 POP5 homolog, ribonuclease P/MRP subunit protein-coding 22065 chr4 182126782 182126886 + 0 NA Intergenic Intergenic 17681 NR_125905 90768 Hs.175465 NR_027107 LOC90768 - uncharacterized LOC90768 ncRNA 17155 chr2 222655998 222656102 + 0 NA exon (NM_005687, exon 1 of 17) exon (NM_005687, exon 1 of 17) 305 NR_130154 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|PheHB|PheRS phenylalanyl-tRNA synthetase beta subunit protein-coding 4446 chr10 118290761 118290844 + 0 NA Intergenic HAL1|LINE|L1 51525 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 2080 chr1 173824518 173824626 + 0 NA promoter-TSS (NM_001171182) promoter-TSS (NM_001171182) 67 NM_001127181 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 23525 chr5 150758627 150758764 + 0 NA promoter-TSS (NM_001135644) promoter-TSS (NM_001135644) -175 NM_001135644 51164 Hs.675564 NM_016221 ENSG00000132912 DCTN4 DYN4|P62 dynactin subunit 4 protein-coding 24156 chr6 19804784 19804822 + 0 NA promoter-TSS (NR_134651) promoter-TSS (NR_134651) -44 NR_134651 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 11996 chr17 5832978 5833082 + 0 NA intron (NR_040000, intron 1 of 3) MER101-int|LTR|ERV1 60796 NR_040000 339166 Hs.736088 NR_040000 ENSG00000179314 LOC339166 - uncharacterized LOC339166 ncRNA 2416 chr1 202593992 202594096 + 0 NA 3' UTR (NM_001136504, exon 9 of 9) 3' UTR (NM_001136504, exon 9 of 9) 49409 NM_001136504 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 6045 chr11 110148969 110149073 + 0 NA intron (NM_033390, intron 2 of 5) intron (NM_033390, intron 2 of 5) 55660 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 21753 chr4 121307548 121307652 + 0 NA Intergenic Intergenic 73426 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 17627 chr20 12555608 12555712 + 0 NA Intergenic L1ME1|LINE|L1 381303 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 10143 chr15 55917089 55917193 + 0 NA promoter-TSS (NM_001284340) promoter-TSS (NM_001284340) -10 NM_001284338 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding 23411 chr5 143143227 143143277 + 0 NA intron (NM_015071, intron 19 of 22) intron (NM_015071, intron 19 of 22) -49248 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 22381 chr5 36526643 36526747 + 0 NA Intergenic Intergenic -79660 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 3852 chr10 71377507 71377642 + 0 NA Intergenic CpG -19360 NM_001171931 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|USH1D cadherin related 23 protein-coding 27983 chr8 67740921 67741025 + 0 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 5412 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 26951 chr7 124785302 124785406 + 0 NA intron (NM_001024603, intron 2 of 3) intron (NM_001024603, intron 2 of 3) 5456 NM_001024603 154872 Hs.444163 NM_001024603 ENSG00000275356 C7orf77 - chromosome 7 open reading frame 77 protein-coding 16781 chr2 184646354 184646473 + 0 NA intron (NM_194250, intron 1 of 3) L1PA16|LINE|L1 48047 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 7550 chr12 103805070 103805174 + 0 NA intron (NM_001031701, intron 4 of 13) HAL1|LINE|L1 36075 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 30771 chrX 63424206 63424210 + 0 NA Intergenic Intergenic -72869 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 19132 chr3 9249644 9249748 + 0 NA promoter-TSS (NM_001033117) promoter-TSS (NM_001033117) -11 NM_001033117 9901 Hs.654743 NM_014850 ENSG00000196220 SRGAP3 ARHGAP14|MEGAP|SRGAP2|WRP SLIT-ROBO Rho GTPase activating protein 3 protein-coding 12911 chr17 69655020 69655124 + 0 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 61085 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 7628 chr12 109477263 109477455 + 0 NA promoter-TSS (NM_130466) promoter-TSS (NM_130466) 185 NR_133898 83892 Hs.524731 NM_031954 ENSG00000110906 KCTD10 BTBD28|MSTP028|ULRO61|hBACURD3 potassium channel tetramerization domain containing 10 protein-coding 4536 chr10 122374561 122374644 + 0 NA promoter-TSS (NM_001001974) promoter-TSS (NM_001001974) 24 NM_001330178 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 27553 chr8 24293900 24294004 + 0 NA promoter-TSS (NM_021777) promoter-TSS (NM_021777) -88 NM_014265 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 12431 chr17 39401587 39401730 + 0 NA promoter-TSS (NM_001184906) promoter-TSS (NM_001184906) -2 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 3361 chr10 17617516 17617618 + 0 NA promoter-TSS (NM_014241) promoter-TSS (NM_014241) -193 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 23437 chr5 146182735 146182776 + 0 NA promoter-TSS (NM_001317965) promoter-TSS (NM_001317965) 32 NM_016460 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 22640 chr5 65812003 65812085 + 0 NA intron (NM_020726, intron 11 of 12) intron (NM_020726, intron 11 of 12) 89848 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 3593 chr10 38578963 38579105 + 0 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -117562 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 22704 chr5 72848025 72848174 + 0 NA promoter-TSS (NM_153188) promoter-TSS (NM_153188) -4 NM_153188 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 4979 chr11 19447355 19447419 + 0 NA intron (NM_001111018, intron 1 of 37) MIRb|SINE|MIR 59842 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 10863 chr16 1678131 1678226 + 0 NA promoter-TSS (NM_144570) promoter-TSS (NM_144570) -99 NM_144570 90861 Hs.513261 NM_144570 ENSG00000206053 HN1L C16orf34|L11 hematological and neurological expressed 1 like protein-coding 19953 chr3 117045230 117045395 + 0 NA Intergenic LTR16A|LTR|ERVL 123881 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 22641 chr5 65862115 65862252 + 0 NA Intergenic AluJb|SINE|Alu -64371 NM_001253701 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 24751 chr6 57961439 57961593 + 0 NA promoter-TSS (NR_132997) promoter-TSS (NR_132997) -70 NR_132996 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 21327 chr4 47463736 47463780 + 0 NA promoter-TSS (NM_001329668) promoter-TSS (NM_001329668) -28 NM_001329668 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 20924 chr3 189841974 189842078 + 0 NA intron (NM_001329964, intron 4 of 13) intron (NM_001329964, intron 4 of 13) 12104 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 9162 chr14 61695232 61695323 + 0 NA promoter-TSS (NM_001530) promoter-TSS (NM_001530) -124 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 1409 chr1 100430547 100430651 + 0 NA intron (NM_033312, intron 5 of 14) intron (NM_033312, intron 5 of 14) 78132 NM_001319210 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|cdc14|hCDC14 cell division cycle 14A protein-coding 5895 chr11 95107563 95107667 + 0 NA intron (NM_015036, intron 1 of 1) intron (NM_015036, intron 1 of 1) 17805 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 4417 chr10 115093058 115093162 + 0 NA promoter-TSS (NR_074088) promoter-TSS (NR_074088) -255 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 25912 chr7 26864491 26864692 + 0 NA 5' UTR (NM_003930, exon 1 of 13) 5' UTR (NM_003930, exon 1 of 13) 152 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 29501 chr9 89606302 89606456 + 0 NA 3' UTR (NM_006705, exon 4 of 4) 3' UTR (NM_006705, exon 4 of 4) 1367 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 24887 chr6 86355446 86355550 + 0 NA Intergenic Intergenic -581808 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 9521 chr14 88987733 88987826 + 0 NA Intergenic Intergenic 163626 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 29234 chr9 73134212 73134292 + 0 NA Intergenic Intergenic -17479 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 22047 chr4 176794773 176794919 + 0 NA Intergenic MER5B|DNA|hAT-Charlie -2101 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|VRP vascular endothelial growth factor C protein-coding 18077 chr20 44960477 44960477 + 0 NA promoter-TSS (NM_006809) promoter-TSS (NM_006809) -4 NM_006809 10953 Hs.517066 NM_006809 ENSG00000025772 TOMM34 HTOM34P|TOM34|URCC3 translocase of outer mitochondrial membrane 34 protein-coding 27567 chr8 25458558 25458662 + 0 NA promoter-TSS (NM_017634) promoter-TSS (NM_017634) -142 NM_017634 54793 Hs.72071 NM_017634 ENSG00000104756 KCTD9 BTBD27 potassium channel tetramerization domain containing 9 protein-coding 27333 chr8 6840746 6840900 + 0 NA intron (NR_045217, intron 2 of 2) intron (NR_045217, intron 2 of 2) -5179 NM_207411 389610 Hs.558840 NM_207411 ENSG00000275591 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK related 5 protein-coding 11561 chr16 69424499 69424587 + 0 NA promoter-TSS (NM_030579) promoter-TSS (NM_030579) -52 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 10604 chr15 84980399 84980490 + 0 NA promoter-TSS (NM_001243137) promoter-TSS (NM_001243137) -69 NM_001243137 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 9175 chr14 63164465 63164525 + 0 NA Intergenic L1MA7|LINE|L1 -39889 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 9739 chr14 104688192 104688296 + 0 NA Intergenic Intergenic -1362 NM_032714 64423 Hs.24956 NM_022489 ENSG00000203485 INF2 C14orf151|C14orf173|CMTDIE|FSGS5|pp9484 inverted formin, FH2 and WH2 domain containing protein-coding 13105 chr17 80575483 80575588 + 0 NA intron (NM_020761, intron 1 of 33) MER91C|DNA|hAT-Tip100 30710 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 25451 chr6 161486456 161486577 + 0 NA intron (NM_004562, intron 9 of 11) MIRb|SINE|MIR 15539 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 25841 chr7 22667926 22668070 + 0 NA Intergenic Intergenic -2465 NR_122075 401312 Hs.583393 NR_122075 ENSG00000238033 LOC401312 - uncharacterized LOC401312 ncRNA 17227 chr2 227839864 227840010 + 0 NA Intergenic L1P3|LINE|L1 26095 NM_001130046 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 1088 chr1 68174166 68174270 + 0 NA intron (NM_001193334, intron 1 of 10) intron (NM_001193334, intron 1 of 10) 9392 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 5373 chr11 62601737 62601888 + 0 NA promoter-TSS (NM_004739) promoter-TSS (NM_004739) 28 NM_004739 9219 Hs.173043 NM_004739 ENSG00000149480 MTA2 MTA1L1|PID metastasis associated 1 family member 2 protein-coding 23850 chr5 181261060 181261212 + 0 NA promoter-TSS (NR_102762) promoter-TSS (NR_102762) -18 NM_001346050 84851 Hs.458412 NM_032765 ENSG00000183718 TRIM52 RNF102 tripartite motif containing 52 protein-coding 979 chr1 61141650 61141869 + 0 NA intron (NM_005595, intron 2 of 9) intron (NM_005595, intron 2 of 9) 59451 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 21612 chr4 99088751 99088855 + 0 NA promoter-TSS (NM_000671) promoter-TSS (NM_000671) -15 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 15060 chr2 14535278 14535421 + 0 NA Intergenic Intergenic -97334 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 709 chr1 40898674 40898702 + 0 NA Intergenic L2c|LINE|L2 -36342 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 24272 chr6 28124491 28124631 + 0 NA promoter-TSS (NM_001320555) promoter-TSS (NM_001320555) 5 NM_001320556 80345 Hs.656641 NM_025231 ENSG00000196812 ZSCAN16 ZNF392|ZNF435|dJ265C24.3 zinc finger and SCAN domain containing 16 protein-coding 3603 chr10 42638159 42638328 + 0 NA intron (NR_130948, intron 1 of 5) CpG 594 NM_001305038 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 12584 chr17 45293510 45293614 + 0 NA intron (NM_003954, intron 1 of 15) intron (NM_003954, intron 1 of 15) 23502 NM_003954 9020 Hs.404183 NM_003954 ENSG00000006062 MAP3K14 FTDCR1B|HS|HSNIK|NIK mitogen-activated protein kinase kinase kinase 14 protein-coding 26463 chr7 77393345 77393515 + 0 NA intron (NM_017439, intron 5 of 30) L2a|LINE|L2 -21768 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 29007 chr9 27362640 27362744 + 0 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -65553 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 9819 chr15 31306584 31306688 + 0 NA Intergenic Intergenic -20219 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 8458 chr13 96398617 96398809 + 0 NA intron (NM_153456, intron 1 of 1) MLT1F2|LTR|ERVL-MaLR -28516 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 26039 chr7 35037490 35037603 + 0 NA intron (NM_015283, intron 1 of 21) CpG 495 NM_015283 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like 1 protein-coding 11106 chr16 20904848 20904887 + 0 NA intron (NR_126516, intron 2 of 3) intron (NR_126516, intron 2 of 3) 3763 NM_001302835 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 10381 chr15 70508806 70508958 + 0 NA Intergenic MIRb|SINE|MIR 77724 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LOC101929151 - uncharacterized LOC101929151 ncRNA 24571 chr6 42879679 42879688 + 0 NA promoter-TSS (NM_198486) promoter-TSS (NM_198486) 67 NR_134562 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 17384 chr2 240251174 240251368 + 0 NA Intergenic Intergenic -110615 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 15261 chr2 28508419 28508616 + 0 NA intron (NM_153021, intron 1 of 57) intron (NM_153021, intron 1 of 57) 12446 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 31075 chrX 133229494 133229598 + 0 NA Intergenic Intergenic -11198 NM_016521 51270 Hs.142908 NM_016521 ENSG00000183434 TFDP3 CT30|DP4|HCA661 transcription factor Dp family member 3 protein-coding 3764 chr10 62637685 62637694 + 0 NA intron (NM_199451, intron 5 of 7) intron (NM_199451, intron 5 of 7) 117241 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 1707 chr1 151282045 151282221 + 0 NA promoter-TSS (NM_020832) promoter-TSS (NM_020832) -179 NM_001304763 57592 Hs.186756 NM_020832 ENSG00000143373 ZNF687 PDB6 zinc finger protein 687 protein-coding 7753 chr12 120469723 120469814 + 0 NA promoter-TSS (NM_003769) promoter-TSS (NM_003769) -13 NM_003769 8683 Hs.706889 NM_003769 ENSG00000111786 SRSF9 SFRS9|SRp30c serine and arginine rich splicing factor 9 protein-coding 17611 chr20 11455609 11455644 + 0 NA Intergenic Intergenic -182243 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 30555 chrX 21940533 21940637 + 0 NA promoter-TSS (NM_001258423) promoter-TSS (NM_001258423) 12 NM_001258423 6611 Hs.724874 NM_004595 ENSG00000102172 SMS MRSR|SPMSY|SRS|SpS spermine synthase protein-coding 23398 chr5 142324914 142325032 + 0 NA promoter-TSS (NM_001293289) promoter-TSS (NM_001293289) 82 NM_001127496 81848 Hs.323308 NM_030964 ENSG00000187678 SPRY4 HH17 sprouty RTK signaling antagonist 4 protein-coding 12441 chr17 39770021 39770216 + 0 NA intron (NM_001257413, intron 3 of 3) intron (NM_001257413, intron 3 of 3) 8107 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 8038 chr13 29595077 29595231 + 0 NA intron (NM_003045, intron 1 of 12) CpG 534 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 17110 chr2 218896973 218897106 + 0 NA Intergenic Intergenic 16506 NM_025216 80326 Hs.121540 NM_025216 ENSG00000135925 WNT10A OODD|SSPS|STHAG4 Wnt family member 10A protein-coding 10457 chr15 75023465 75023618 + 0 NA promoter-TSS (NM_001301101) promoter-TSS (NM_001301101) -14 NM_001301102 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 6189 chr11 119107336 119107401 + 0 NA promoter-TSS (NM_001290474) promoter-TSS (NM_001290474) 18 NM_001290474 9854 Hs.26899 NM_014807 ENSG00000172375 C2CD2L DLNB23|TMEM24 C2CD2 like protein-coding 28955 chr9 18976898 18976975 + 0 NA intron (NM_001287049, intron 1 of 3) MIRb|SINE|MIR 56322 NM_153707 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 2517 chr1 207020147 207020287 + 0 NA 3' UTR (NM_001083924, exon 3 of 3) 3' UTR (NM_001083924, exon 3 of 3) 12539 NM_023938 79098 Hs.32417 NM_023938 ENSG00000182795 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 28533 chr8 121145703 121145811 + 0 NA Intergenic MER102b|DNA|hAT-Charlie -333688 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 24684 chr6 52284787 52284893 + 0 NA promoter-TSS (NM_001270472) promoter-TSS (NM_001270472) 41 NM_002388 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 23056 chr5 115440894 115440998 + 0 NA Intergenic L1M2|LINE|L1 103948 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 7547 chr12 103560705 103560896 + 0 NA TTS (NR_110103) TTS (NR_110103) 13006 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LOC101929084 - uncharacterized LOC101929084 ncRNA 26752 chr7 103297365 103297514 + 0 NA promoter-TSS (NM_004279) promoter-TSS (NM_004279) 13 NM_004279 9512 Hs.184211 NM_004279 ENSG00000105819 PMPCB Beta-MPP|MPP11|MPPB|MPPP52|P-52 peptidase, mitochondrial processing beta subunit protein-coding 19591 chr3 58005725 58005829 + 0 NA Intergenic Tigger3|DNA|TcMar-Tigger -2623 NM_001457 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 24668 chr6 49326453 49326603 + 0 NA Intergenic Intergenic 136800 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MUT MCM methylmalonyl-CoA mutase protein-coding 21151 chr4 7068036 7068219 + 0 NA promoter-TSS (NM_025196) promoter-TSS (NM_025196) 83 NM_025196 80273 Hs.443723 NM_025196 ENSG00000109519 GRPEL1 GrpE|HMGE|mt-GrpE#1 GrpE like 1, mitochondrial protein-coding 20635 chr3 170745545 170745639 + 0 NA intron (NR_135556, intron 5 of 5) MER117|DNA|hAT-Charlie 124664 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 22802 chr5 81851950 81852067 + 0 NA Intergenic Intergenic -100755 NM_001345886 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 16934 chr2 202265614 202265756 + 0 NA promoter-TSS (NM_015934) promoter-TSS (NM_015934) -31 NM_015934 51602 Hs.471104 NM_015934 ENSG00000055044 NOP58 HSPC120|NOP5|NOP5/NOP58 NOP58 ribonucleoprotein protein-coding 15095 chr2 17495680 17495784 + 0 NA Intergenic L2a|LINE|L2 22707 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 9882 chr15 37100455 37100559 + 0 NA promoter-TSS (NM_170674) promoter-TSS (NM_170674) -367 NR_051953 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 28774 chr8 141074066 141074185 + 0 NA Intergenic Intergenic -54496 NM_014957 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 11704 chr16 80569709 80569813 + 0 NA promoter-TSS (NR_104665) promoter-TSS (NR_104665) -151 NR_104665 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 22647 chr5 66209503 66209634 + 0 NA Intergenic Intergenic 64733 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 19589 chr3 57969802 57970007 + 0 NA Intergenic Intergenic -38496 NM_001457 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 603 chr1 34859728 34859873 + 0 NA promoter-TSS (NM_001164824) promoter-TSS (NM_001164824) 16 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 22082 chr4 183722810 183722954 + 0 NA Intergenic CpG 63615 NM_199053 60684 Hs.443240 NM_021942 ENSG00000168538 TRAPPC11 C4orf41|FOIGR|GRY|LGMD2S trafficking protein particle complex 11 protein-coding 8009 chr13 27043157 27043261 + 0 NA Intergenic Intergenic -82324 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 5666 chr11 74493594 74493733 + 0 NA promoter-TSS (NM_001144869) promoter-TSS (NM_001144869) 50 NM_001144869 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 (putative) protein-coding 25522 chr7 539907 540055 + 0 NA Intergenic Intergenic 19590 NR_033963 441307 Hs.521334 NR_033963 ENSG00000223855 HRAT92 - heart tissue-associated transcript 92 ncRNA 90 chr1 6603003 6603019 + 0 NA promoter-TSS (NM_001324309) promoter-TSS (NM_001324309) -113 NM_014851 9903 Hs.7764 NM_014851 ENSG00000162413 KLHL21 - kelch like family member 21 protein-coding 4712 chr11 3865841 3865945 + 0 NA intron (NM_001277961, intron 1 of 11) intron (NM_001277961, intron 1 of 11) 9831 NR_039835 100616453 NR_039835 ENSG00000167323 MIR4687 - microRNA 4687 ncRNA 16141 chr2 112055166 112055312 + 0 NA promoter-TSS (NM_001329914) promoter-TSS (NM_001329914) 16 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 16385 chr2 138122330 138122332 + 0 NA Intergenic Intergenic 20447 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 9717 chr14 103155137 103155278 + 0 NA Intergenic Intergenic 28880 NM_006291 7127 Hs.525607 NM_006291 ENSG00000185215 TNFAIP2 B94|EXOC3L3 TNF alpha induced protein 2 protein-coding 3247 chr10 6204449 6204467 + 0 NA intron (NM_001314063, intron 1 of 15) CpG-2634 1581 NM_001323017 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 28043 chr8 74320452 74320600 + 0 NA intron (NM_020647, intron 1 of 5) CpG 835 NM_001317830 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 22162 chr5 2751635 2751795 + 0 NA promoter-TSS (NM_001134222) promoter-TSS (NM_001134222) -60 NM_033267 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 11174 chr16 27323152 27323306 + 0 NA intron (NM_001257406, intron 1 of 9) intron (NM_001257406, intron 1 of 9) 9320 NM_001257406 3566 Hs.513457 NM_000418 ENSG00000077238 IL4R CD124|IL-4RA|IL4RA interleukin 4 receptor protein-coding 25095 chr6 124488044 124488167 + 0 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 205100 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 23088 chr5 119355320 119355430 + 0 NA promoter-TSS (NM_014350) promoter-TSS (NM_014350) -445 NM_014350 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 4997 chr11 20035803 20035907 + 0 NA intron (NM_001111019, intron 2 of 27) intron (NM_001111019, intron 2 of 27) 13299 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 27042 chr7 134316968 134317120 + 0 NA promoter-TSS (NM_032826) promoter-TSS (NM_032826) 31 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 26990 chr7 129611688 129611900 + 0 NA promoter-TSS (NM_001293164) promoter-TSS (NM_001293164) 92 NM_001293164 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 12522 chr17 42554730 42554834 + 0 NA promoter-TSS (NR_144402) promoter-TSS (NR_144402) 20 NR_144402 108783654 Hs.655222 NR_144402 LOC108783654 - uncharacterized LOC108783654 ncRNA 30894 chrX 103310953 103311057 + 0 NA promoter-TSS (NM_001168401) promoter-TSS (NM_001168401) 5 NM_001168401 84707 Hs.398989 NM_032621 ENSG00000133134 BEX2 BEX1|DJ79P11.1 brain expressed X-linked 2 protein-coding 17665 chr20 14986132 14986169 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) -56632 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 8554 chr13 105991670 105991774 + 0 NA Intergenic L2|LINE|L2 284892 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 10073 chr15 50354107 50354211 + 0 NA promoter-TSS (NR_024490) promoter-TSS (NR_024490) -15 NR_024490 100129387 Hs.659360 NR_024490 GABPB1-AS1 - GABPB1 antisense RNA 1 ncRNA 16338 chr2 132430111 132430215 + 0 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 13589 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 13027 chr17 75941069 75941220 + 0 NA TTS (NM_001185039) TTS (NM_001185039) -2912 NM_001319193 85302 Hs.720068 NM_001080542 ENSG00000188878 FBF1 Alb|FBF-1 Fas binding factor 1 protein-coding 29538 chr9 91948838 91948942 + 0 NA intron (NM_004560, intron 1 of 8) CpG 1272 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 27524 chr8 22987090 22987194 + 0 NA promoter-TSS (NM_001160036) promoter-TSS (NM_001160036) -275 NM_001160036 23221 Hs.372688 NM_015178 ENSG00000008853 RHOBTB2 DBC2 Rho related BTB domain containing 2 protein-coding 25797 chr7 20199508 20199656 + 0 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 17808 NM_182762 346389 Hs.598388 NM_182762 ENSG00000183742 MACC1 7A5|SH3BP4L MACC1, MET transcriptional regulator protein-coding 16747 chr2 180007306 180007444 + 0 NA promoter-TSS (NM_020943) promoter-TSS (NM_020943) -322 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 14950 chr2 8804051 8804208 + 0 NA intron (NM_020738, intron 7 of 29) intron (NM_020738, intron 7 of 29) 33496 NM_020738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS kinase D interacting substrate 220 protein-coding 29792 chr9 108056913 108057017 + 0 NA Intergenic Intergenic -567245 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 17644 chr20 13638923 13639097 + 0 NA promoter-TSS (NR_136628) promoter-TSS (NR_136628) -74 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 24345 chr6 30820400 30820504 + 0 NA intron (NR_130726, intron 1 of 1) LTR16A|LTR|ERVL 10207 NR_130726 401247 NR_130726 ENSG00000214894 LINC00243 C6orf214|NCRNA00243 long intergenic non-protein coding RNA 243 ncRNA 30271 chr9 131370815 131370893 + 0 NA Intergenic Intergenic -59236 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 20061 chr3 124845593 124845690 + 0 NA intron (NM_002213, intron 4 of 14) intron (NM_002213, intron 4 of 14) 41664 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 27233 chr7 151460052 151460196 + 0 NA Intergenic Intergenic -19311 NR_131779 155051 Hs.647104 NM_144727 ENSG00000127377 CRYGN - crystallin gamma N protein-coding 29227 chr9 72960591 72960695 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -7326 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 23332 chr5 139968828 139968916 + 0 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 74427 NM_004883 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 28221 chr8 94719675 94719779 + 0 NA promoter-TSS (NM_181787) promoter-TSS (NM_181787) -148 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 (C. elegans) protein-coding 28390 chr8 105848441 105848545 + 0 NA intron (NR_125796, intron 2 of 7) L1M3de|LINE|L1 212010 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 - ZFPM2 antisense RNA 1 ncRNA 21993 chr4 168589269 168589373 + 0 NA intron (NM_016081, intron 2 of 20) AmnSINE1|SINE|5S-Deu-L2 -42296 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 30034 chr9 121201897 121201962 + 0 NA 5' UTR (NM_016322, exon 1 of 8) 5' UTR (NM_016322, exon 1 of 8) 158 NM_016322 51552 Hs.371563 NM_016322 ENSG00000119396 RAB14 FBP|RAB-14 RAB14, member RAS oncogene family protein-coding 30636 chrX 41442510 41442664 + 0 NA Intergenic CpG -4873 NM_022567 60506 Hs.302019 NM_022567 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 16340 chr2 132438761 132438865 + 0 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 22239 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 4117 chr10 95295128 95295218 + 0 NA Intergenic Intergenic -4025 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 27829 chr8 52941181 52941285 + 0 NA TTS (NM_005285) TTS (NM_005285) 1325 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 14559 chr19 45478561 45478653 + 0 NA Intergenic tRNA-SeC(e)-TGA|tRNA|tRNA 10612 NM_006732 2354 Hs.590958 NM_006732 ENSG00000125740 FOSB AP-1|G0S3|GOS3|GOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding 11218 chr16 30407456 30407559 + 0 NA promoter-TSS (NM_001142305) promoter-TSS (NM_001142305) 93 NM_016643 51333 Hs.148584 NM_016643 ENSG00000179965 ZNF771 DSC43 zinc finger protein 771 protein-coding 7145 chr12 56722335 56722374 + 0 NA intron (NM_001113203, intron 2 of 10) intron (NM_001113203, intron 2 of 10) 2938 NM_001113201 4666 Hs.505735 NM_005594 ENSG00000196531 NACA HSD48|NAC-alpha|NACA1|skNAC nascent polypeptide-associated complex alpha subunit protein-coding 26592 chr7 92528600 92528732 + 0 NA promoter-TSS (NM_000466) promoter-TSS (NM_000466) -107 NM_032120 84060 Hs.21590 NM_032120 ENSG00000127993 RBM48 C7orf64|HSPC304|MGC16142 RNA binding motif protein 48 protein-coding 9307 chr14 70416971 70417116 + 0 NA promoter-TSS (NM_018373) promoter-TSS (NM_018373) 47 NM_001202547 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 26084 chr7 38502409 38502513 + 0 NA intron (NM_139316, intron 3 of 19) LTR32|LTR|ERVL 129106 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 7605 chr12 107380380 107380484 + 0 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) 59844 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 15366 chr2 37689293 37689397 + 0 NA Intergenic Intergenic -16810 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 11036 chr16 13307451 13307578 + 0 NA Intergenic Intergenic 405894 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 24637 chr6 47094502 47094606 + 0 NA Intergenic Intergenic -52191 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 29446 chr9 86721494 86721598 + 0 NA Intergenic Intergenic 225643 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 24888 chr6 86582024 86582128 + 0 NA Intergenic LTR10F|LTR|ERV1 -355230 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 20630 chr3 170357365 170357366 + 0 NA promoter-TSS (NM_001145098) promoter-TSS (NM_001145098) -320 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 14176 chr19 14006549 14006565 + 0 NA promoter-TSS (NM_002918) promoter-TSS (NM_002918) -235 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 6747 chr12 25251122 25251226 + 0 NA promoter-TSS (NM_004985) promoter-TSS (NM_004985) -243 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 7764 chr12 120925929 120926033 + 0 NA Intergenic Intergenic 21286 NR_131215 105500240 Hs.742757 NR_131215 XLOC_009911 - uncharacterized LOC105500240 ncRNA 23111 chr5 123209698 123209802 + 0 NA Intergenic Intergenic 120604 NM_001136239 93166 Hs.135118 NM_001136239 ENSG00000061455 PRDM6 KMT8C|PDA3|PRISM PR/SET domain 6 protein-coding 9779 chr14_KI270723v1_random 36751 36902 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 27523 chr8 22918476 22918495 + 0 NA intron (NM_144962, intron 3 of 6) intron (NM_144962, intron 3 of 6) 9423 NM_144962 157310 Hs.491242 NM_144962 ENSG00000134020 PEBP4 CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4 phosphatidylethanolamine binding protein 4 protein-coding 25246 chr6 142375407 142375501 + 0 NA intron (NM_001032394, intron 4 of 24) intron (NM_001032394, intron 4 of 24) 73535 NM_001032395 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 4606 chr10 128212037 128212132 + 0 NA Intergenic Intergenic -73866 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 16657 chr2 172195979 172196125 + 0 NA Intergenic Intergenic 93046 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 11178 chr16 28211175 28211279 + 0 NA intron (NM_001270940, intron 1 of 24) CpG 691 NM_001270940 23214 Hs.460468 NM_015171 ENSG00000169180 XPO6 EXP6|RANBP20 exportin 6 protein-coding 20675 chr3 174439848 174439876 + 0 NA Intergenic Intergenic -419459 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 10870 chr16 1913443 1913593 + 0 NA intron (NM_001009606, intron 1 of 1) (GGCAG)n|Simple_repeat|Simple_repeat 4805 NM_001009606 64711 Hs.670144 NM_001009606 ENSG00000162040 HS3ST6 3-OST-6|HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 6 protein-coding 9335 chr14 72884082 72884186 + 0 NA intron (NM_001280543, intron 1 of 10) intron (NM_001280543, intron 1 of 10) 8515 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 13618 chr18 55477602 55477698 + 0 NA intron (NM_001243226, intron 4 of 20) intron (NM_001243226, intron 4 of 20) -1571 NR_039754 100616290 NR_039754 ENSG00000264571 MIR4529 - microRNA 4529 ncRNA 19190 chr3 14125809 14125826 + 0 NA promoter-TSS (NM_001098502) promoter-TSS (NM_001098502) 877 NM_024334 79188 Hs.517817 NM_024334 ENSG00000170876 TMEM43 ARVC5|ARVD5|EDMD7|LUMA transmembrane protein 43 protein-coding 12281 chr17 29148975 29149107 + 0 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) -8662 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 9481 chr14 83164086 83164190 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -1541077 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 19440 chr3 45167581 45167685 + 0 NA Intergenic LTR33|LTR|ERVL -21211 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 30874 chrX 100636727 100636856 + 0 NA promoter-TSS (NM_003270) promoter-TSS (NM_003270) -59 NM_001278740 7105 Hs.43233 NM_003270 ENSG00000000003 TSPAN6 T245|TM4SF6|TSPAN-6 tetraspanin 6 protein-coding 22465 chr5 43121428 43121581 + 0 NA promoter-TSS (NM_001330711) promoter-TSS (NM_001330711) 43 NM_001330705 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 20939 chr3 190322407 190322551 + 0 NA promoter-TSS (NM_021101) promoter-TSS (NM_021101) -33 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 29121 chr9 65404831 65404894 + 0 NA Intergenic Intergenic -119653 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 22688 chr5 69492622 69492726 + 0 NA promoter-TSS (NM_001205254) promoter-TSS (NM_001205254) -89 NM_001205254 100506658 Hs.592605 NM_002538 ENSG00000197822 OCLN BLCPMG|PPP1R115 occludin protein-coding 5581 chr11 68447345 68447496 + 0 NA intron (NM_002335, intron 22 of 22) intron (NM_002335, intron 22 of 22) -13298 NM_001164163 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 2280 chr1 193211601 193211705 + 0 NA intron (NM_024529, intron 11 of 16) MER44C|DNA|TcMar-Tigger -25040 NM_003783 8707 Hs.518834 NM_003783 ENSG00000162630 B3GALT2 BETA3GALT2|GLCT2|beta3Gal-T2 beta-1,3-galactosyltransferase 2 protein-coding 21840 chr4 140728033 140728259 + 0 NA intron (NM_015130, intron 1 of 20) intron (NM_015130, intron 1 of 20) 28171 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 25096 chr6 124535876 124535980 + 0 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 252923 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 273 chr1 18956788 18956942 + 0 NA promoter-TSS (NM_001136265) promoter-TSS (NM_001136265) -533 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 26896 chr7 118081125 118081269 + 0 NA Intergenic L2c|LINE|L2 -102835 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 6914 chr12 45235811 45235915 + 0 NA intron (NM_001142679, intron 1 of 19) intron (NM_001142679, intron 1 of 19) -19857 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 PLEKHA9 pleckstrin homology domain containing A8 pseudogene 1 pseudo 27910 chr8 60412666 60412760 + 0 NA intron (NR_103854, intron 1 of 2) intron (NR_103854, intron 1 of 2) 1105 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 24876 chr6 85361400 85361551 + 0 NA Intergenic Intergenic 28711 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LOC101928820 - uncharacterized LOC101928820 ncRNA 23596 chr5 157511729 157511882 + 0 NA intron (NM_033274, intron 8 of 22) intron (NM_033274, intron 8 of 22) -51705 NR_136204 102724404 Hs.570889 NR_136204 ENSG00000251405 LOC102724404 - uncharacterized LOC102724404 ncRNA 11356 chr16 53142926 53143074 + 0 NA intron (NM_025134, intron 1 of 38) MSTD|LTR|ERVL-MaLR -12926 NM_001308319 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 17465 chr20 2352022 2352126 + 0 NA Intergenic Intergenic -28834 NM_198994 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 21708 chr4 112231694 112231798 + 0 NA promoter-TSS (NM_018569) promoter-TSS (NM_018569) 7 NR_136622 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 4991 chr11 19803852 19803865 + 0 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -43775 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 2262 chr1 190864408 190864512 + 0 NA Intergenic L1PA17|LINE|L1 239570 NR_033922 440704 Hs.518802 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 29128 chr9 68779926 68780080 + 0 NA promoter-TSS (NM_138333) promoter-TSS (NM_138333) -3 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 2912 chr1 229229417 229229419 + 0 NA Intergenic Intergenic -41644 NM_001271998 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 20326 chr3 143135278 143135409 + 0 NA Intergenic Intergenic 15567 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 25571 chr7 3244532 3244636 + 0 NA Intergenic Intergenic -56864 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 131 chr1 9428908 9429068 + 0 NA promoter-TSS (NR_104623) promoter-TSS (NR_104623) 8 NR_104622 100506022 Hs.131775 NR_104622 LOC100506022 - uncharacterized LOC100506022 ncRNA 11977 chr17 4854423 4854532 + 0 NA intron (NM_170663, intron 1 of 31) intron (NM_170663, intron 1 of 31) 21137 NM_153827 50488 Hs.443417 NM_015716 ENSG00000141503 MINK1 B55|MAP4K6|MINK|YSK2|ZC3 misshapen like kinase 1 protein-coding 7686 chr12 113966277 113966431 + 0 NA promoter-TSS (NM_001146699) promoter-TSS (NM_001146699) 17 NM_001146698 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 - RNA binding motif protein 19 protein-coding 7119 chr12 56104376 56104529 + 0 NA TTS (NM_001982) TTS (NM_001982) 133 NM_006191 5036 Hs.524498 NM_006191 ENSG00000170515 PA2G4 EBP1|HG4-1|p38-2G4 proliferation-associated 2G4 protein-coding 26295 chr7 54831939 54832071 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 72692 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 13417 chr18 33756310 33756414 + 0 NA Intergenic Intergenic 177785 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 20354 chr3 148708353 148708386 + 0 NA intron (NM_000685, intron 2 of 2) intron (NM_000685, intron 2 of 2) 10498 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 26355 chr7 66681987 66682088 + 0 NA promoter-TSS (NR_104676) promoter-TSS (NR_104676) -54 NR_104676 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 24089 chr6 14743478 14743568 + 0 NA Intergenic Intergenic -458069 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 10425 chr15 73633485 73633612 + 0 NA promoter-TSS (NM_001161363) promoter-TSS (NM_001161363) -136 NM_001161364 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 1872 chr1 157862648 157862716 + 0 NA Intergenic Intergenic -20838 NM_001347698 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 30990 chrX 116232951 116233055 + 0 NA Intergenic Intergenic 62298 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 27125 chr7 141072577 141072681 + 0 NA Intergenic CpG -1603 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 18882 chr22 37906155 37906210 + 0 NA promoter-TSS (NM_033386) promoter-TSS (NM_033386) 34 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 16603 chr2 166184956 166185060 + 0 NA intron (NR_110260, intron 3 of 11) L2a|LINE|L2 -35876 NM_001202435 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 24582 chr6 43096632 43096736 + 0 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) 19870 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 19677 chr3 79019454 79019525 + 0 NA promoter-TSS (NM_001145845) promoter-TSS (NM_001145845) -30 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 31121 chrX 144791450 144791578 + 0 NA Intergenic LTR14C|LTR|ERVK -456073 NM_001009614 494118 Hs.551270 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 30938 chrX 107676895 107676999 + 0 NA Intergenic Intergenic 39534 NM_001015881 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 20131 chr3 129490275 129490429 + 0 NA intron (NM_001280541, intron 16 of 29) intron (NM_001280541, intron 16 of 29) -38287 NM_000539 6010 Hs.247565 NM_000539 ENSG00000163914 RHO CSNBAD1|OPN2|RP4 rhodopsin protein-coding 27057 chr7 135177396 135177559 + 0 NA Intergenic HERV3-int|LTR|ERV1 -6651 NM_001305629 78996 Hs.643113 NM_024033 ENSG00000122783 C7orf49 MRI|MRI-2 chromosome 7 open reading frame 49 protein-coding 23096 chr5 120599718 120599799 + 0 NA intron (NM_001308088, intron 1 of 3) L1MEi|LINE|L1 68294 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 7489 chr12 98345510 98345543 + 0 NA Intergenic MER61E|LTR|ERV1 111619 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 17563 chr20 7346630 7346734 + 0 NA promoter-TSS (NR_110610) promoter-TSS (NR_110610) -751 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 12842 chr17 64082252 64082300 + 0 NA intron (NM_001433, intron 2 of 21) intron (NM_001433, intron 2 of 21) 47866 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 6416 chr11 134542482 134542623 + 0 NA Intergenic MER39B|LTR|ERV1 106070 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 855 chr1 48931723 48931811 + 0 NA intron (NM_001323573, intron 5 of 12) AluJb|SINE|Alu -154798 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 26760 chr7 104208069 104208173 + 0 NA promoter-TSS (NM_181747) promoter-TSS (NM_181747) -74 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 16673 chr2 173076046 173076150 + 0 NA intron (NM_133646, intron 1 of 11) CpG 261 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 3659 chr10 48416725 48416829 + 0 NA intron (NM_001278548, intron 4 of 9) MLT1I-int|LTR|ERVL-MaLR 15165 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 27453 chr8 18197411 18197551 + 0 NA intron (NM_001291962, intron 2 of 5) MER20|DNA|hAT-Charlie -12622 NM_001160170 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 11772 chr16 84618163 84618308 + 0 NA promoter-TSS (NM_021149) promoter-TSS (NM_021149) -139 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 30960 chrX 109374771 109374875 + 0 NA intron (NM_001522, intron 19 of 19) intron (NM_001522, intron 19 of 19) 107233 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 18238 chr20 52943619 52943705 + 0 NA Intergenic Intergenic -28745 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 1788 chr1 154418320 154418472 + 0 NA intron (NM_000565, intron 1 of 9) intron (NM_000565, intron 1 of 9) 13203 NM_181359 3570 Hs.135087 NM_000565 ENSG00000160712 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 21472 chr4 77156678 77156797 + 0 NA promoter-TSS (NM_004354) promoter-TSS (NM_004354) -467 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 15147 chr2 20289180 20289284 + 0 NA intron (NM_015317, intron 10 of 20) intron (NM_015317, intron 10 of 20) 38154 NM_001282791 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 2186 chr1 182175469 182175585 + 0 NA Intergenic Intergenic -113815 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 680 chr1 39408719 39408764 + 0 NA promoter-TSS (NM_015038) promoter-TSS (NM_015038) -763 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 8826 chr14 33915241 33915358 + 0 NA Intergenic Intergenic 35527 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 12089 chr17 9389200 9389372 + 0 NA intron (NM_004853, intron 6 of 7) intron (NM_004853, intron 6 of 7) 186672 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 11482 chr16 66830858 66830999 + 0 NA promoter-TSS (NM_003905) promoter-TSS (NM_003905) 48 NM_003905 8883 Hs.460978 NM_003905 ENSG00000159593 NAE1 A-116A10.1|APPBP1|HPP1|ula-1 NEDD8 activating enzyme E1 subunit 1 protein-coding 23578 chr5 154610465 154610606 + 0 NA Intergenic CpG -14463 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 15677 chr2 65130151 65130307 + 0 NA promoter-TSS (NM_004161) promoter-TSS (NM_004161) 72 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 15542 chr2 53475527 53475657 + 0 NA Intergenic Intergenic -292191 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 20899 chr3 188679817 188679968 + 0 NA intron (NM_001167671, intron 6 of 10) Tigger15a|DNA|TcMar-Tigger -8889 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 18233 chr20 52859229 52859245 + 0 NA Intergenic Intergenic -113170 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 2783 chr1 223233617 223233721 + 0 NA intron (NM_017982, intron 5 of 8) intron (NM_017982, intron 5 of 8) -90387 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 12154 chr17 17042217 17042390 + 0 NA promoter-TSS (NM_015134) promoter-TSS (NM_015134) -457 NM_201274 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 13059 chr17 77319407 77319511 + 0 NA promoter-TSS (NM_006640) promoter-TSS (NM_006640) -56 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 14021 chr19 7629641 7629811 + 0 NA promoter-TSS (NM_020196) promoter-TSS (NM_020196) -59 NR_033242 100131801 Hs.728837 NM_001171155 ENSG00000229833 PET100 C19orf79 PET100 homolog protein-coding 21161 chr4 8158896 8159000 + 0 NA promoter-TSS (NM_001130083) promoter-TSS (NM_001130083) -116 NM_001130086 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 13138 chr17 81733855 81734006 + 0 NA Intergenic Intergenic 21694 NM_001270953 1468 Hs.548187 NM_012140 ENSG00000183048 SLC25A10 DIC solute carrier family 25 member 10 protein-coding 20203 chr3 134471996 134472037 + 0 NA Intergenic Intergenic -13717 NM_001042384 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 7735 chr12 119716779 119716883 + 0 NA intron (NM_001206999, intron 32 of 47) L1ME3G|LINE|L1 -3107 NR_031589 100302274 NR_031589 ENSG00000122966 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 2292 chr1 196181225 196181390 + 0 NA Intergenic MER54B|LTR|ERVL 401174 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 15102 chr2 17620475 17620513 + 0 NA intron (NM_003385, intron 2 of 3) intron (NM_003385, intron 2 of 3) 79954 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 1997 chr1 165827946 165827956 + 0 NA intron (NM_012474, intron 1 of 6) CpG 456 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 26498 chr7 81299493 81299597 + 0 NA Intergenic Intergenic 262274 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 6650 chr12 13206485 13206589 + 0 NA intron (NM_001423, intron 1 of 4) intron (NM_001423, intron 1 of 4) 9869 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 12509 chr17 41930421 41930580 + 0 NA promoter-TSS (NM_031421) promoter-TSS (NM_031421) -123 NR_110662 83538 Hs.201134 NM_031421 ENSG00000204815 TTC25 CILD35 tetratricopeptide repeat domain 25 protein-coding 8400 chr13 77780000 77780104 + 0 NA Intergenic Intergenic -38885 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 19703 chr3 94062830 94062950 + 0 NA promoter-TSS (NM_176815) promoter-TSS (NM_176815) 97 NM_176815 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 12436 chr17 39705839 39705943 + 0 NA intron (NR_110535, intron 1 of 26) intron (NR_110535, intron 1 of 26) 5913 NR_110535 2064 Hs.446352 NM_004448 ENSG00000141736 ERBB2 CD340|HER-2|HER-2/neu|HER2|MLN 19|NEU|NGL|TKR1 erb-b2 receptor tyrosine kinase 2 protein-coding 1680 chr1 150477857 150477951 + 0 NA Intergenic Intergenic -9460 NM_025150 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 2879 chr1 227946406 227946534 + 0 NA intron (NM_003395, intron 1 of 3) intron (NM_003395, intron 1 of 3) 1505 NM_003395 7483 Hs.149504 NM_003395 ENSG00000143816 WNT9A WNT14 Wnt family member 9A protein-coding 24233 chr6 26341697 26341853 + 0 NA Intergenic Intergenic -23384 NM_001197249 11118 Hs.376046 NM_007047 ENSG00000186470 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin subfamily 3 member A2 protein-coding 4043 chr10 88880745 88880779 + 0 NA intron (NM_020799, intron 1 of 10) CpG 575 NM_020799 57559 Hs.16229 NM_020799 ENSG00000138134 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein like 1 protein-coding 19285 chr3 27712182 27712286 + 0 NA Intergenic Intergenic 10481 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 28557 chr8 122806026 122806163 + 0 NA intron (NM_014943, intron 1 of 3) L2c|LINE|L2 24432 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 25149 chr6 130178835 130178939 + 0 NA intron (NM_001258275, intron 9 of 13) intron (NM_001258275, intron 9 of 13) 36998 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 2077 chr1 173477024 173477151 + 0 NA promoter-TSS (NR_037845) promoter-TSS (NR_037845) 68 NR_037845 100506023 Hs.731284 NR_037845 LOC100506023 - uncharacterized LOC100506023 ncRNA 2036 chr1 168409074 168409178 + 0 NA intron (NR_037851, intron 3 of 3) intron (NR_037851, intron 3 of 3) 13530 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 21930 chr4 154507208 154507362 + 0 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -15560 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 11292 chr16 47574223 47574327 + 0 NA intron (NM_001031835, intron 8 of 31) L1PBa|LINE|L1 112976 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 10266 chr15 64019975 64020117 + 0 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 26276 NM_014326 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 24676 chr6 51473198 51473302 + 0 NA Intergenic Intergenic -148620 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 21148 chr4 6987063 6987215 + 0 NA promoter-TSS (NM_001113363) promoter-TSS (NM_001113363) -23 NM_001113363 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 12419 chr17 38598625 38598774 + 0 NA intron (NM_025248, intron 1 of 18) intron (NM_025248, intron 1 of 18) 7231 NM_025248 80725 Hs.448872 NM_025248 ENSG00000277363 SRCIN1 P140|SNIP SRC kinase signaling inhibitor 1 protein-coding 24429 chr6 34392779 34392792 + 0 NA promoter-TSS (NM_006703) promoter-TSS (NM_006703) -105 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 28228 chr8 95067449 95067554 + 0 NA non-coding (NR_132987, exon 2 of 2) non-coding (NR_132987, exon 2 of 2) -5413 NR_036105 100422964 NR_036105 ENSG00000283522 MIR3150A MIR3150|mir-3150a microRNA 3150a ncRNA 10573 chr15 82709535 82709639 + 0 NA TTS (NR_034139) TTS (NR_034139) 321 NM_001278512 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 NAPTB adaptor related protein complex 3 beta 2 subunit protein-coding 1552 chr1 114670157 114670298 + 0 NA promoter-TSS (NM_001256404) promoter-TSS (NM_001256404) -116 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 31188 chrX 154516257 154516427 + 0 NA promoter-TSS (NM_001171132) promoter-TSS (NM_001171132) -100 NM_001171133 60343 Hs.289108 NM_021806 ENSG00000071889 FAM3A 2.19|DLD|DXS560S|XAP-7 family with sequence similarity 3 member A protein-coding 25790 chr7 19708978 19709101 + 0 NA promoter-TSS (NM_001002926) promoter-TSS (NM_001002926) -2 NM_001002926 221830 Hs.353035 NM_001002926 ENSG00000105849 TWISTNB - TWIST neighbor protein-coding 30068 chr9 122905413 122905530 + 0 NA promoter-TSS (NM_018835) promoter-TSS (NM_018835) -188 NM_001100588 54542 Hs.533499 NM_018835 ENSG00000056586 RC3H2 MNAB|RNF164 ring finger and CCCH-type domains 2 protein-coding 24459 chr6 36314318 36314457 + 0 NA Intergenic Intergenic 22498 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 C6orf222 - chromosome 6 open reading frame 222 protein-coding 41 chr1 2412509 2412638 + 0 NA promoter-TSS (NM_002617) promoter-TSS (NM_002617) -2 NM_153818 5192 Hs.732228 NM_002617 ENSG00000157911 PEX10 NALD|PBD6A|PBD6B|RNF69 peroxisomal biogenesis factor 10 protein-coding 3084 chr1 241847925 241847961 + 0 NA promoter-TSS (NM_001319224) promoter-TSS (NM_001319224) -248 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 2887 chr1 228103349 228103502 + 0 NA promoter-TSS (NM_024319) promoter-TSS (NM_024319) 37 NR_130975 79169 Hs.445952 NM_024319 ENSG00000143793 C1orf35 MMTAG2 chromosome 1 open reading frame 35 protein-coding 23195 chr5 131797144 131797248 + 0 NA promoter-TSS (NM_001346113) promoter-TSS (NM_001346113) -133 NM_001346113 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 13706 chr18 63427683 63427776 + 0 NA Intergenic Intergenic -5210 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 22633 chr5 65563102 65563268 + 0 NA promoter-TSS (NM_001267038) promoter-TSS (NM_001267038) -17 NM_001267038 64105 Hs.529778 NM_022145 ENSG00000123219 CENPK AF5alpha|CENP-K|FKSG14|P33|Solt centromere protein K protein-coding 14800 chr19 55167063 55167157 + 0 NA promoter-TSS (NM_001256714) promoter-TSS (NM_001256714) -388 NM_001256716 352909 Hs.351582 NM_178837 ENSG00000167646 DNAAF3 C19orf51|CILD2|DAB1|PCD|PF22 dynein axonemal assembly factor 3 protein-coding 19580 chr3 57227668 57227790 + 0 NA promoter-TSS (NM_012096) promoter-TSS (NM_012096) -8 NM_012096 26060 Hs.476415 NM_012096 ENSG00000157500 APPL1 APPL|DIP13alpha|MODY14 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 protein-coding 12412 chr17 37825048 37825152 + 0 NA Intergenic Intergenic 59643 NR_024178 284100 Hs.434159 NM_001129906 ENSG00000276715 YWHAEP7 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7 pseudo 27487 chr8 19666467 19666571 + 0 NA intron (NR_024040, intron 1 of 9) AluSz|SINE|Alu 16064 NM_018371 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 23040 chr5 113488408 113488608 + 0 NA 5' UTR (NM_001085377, exon 1 of 19) 5' UTR (NM_001085377, exon 1 of 19) 322 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 mutated in colorectal cancers protein-coding 22013 chr4 172850906 172850964 + 0 NA intron (NM_001034845, intron 7 of 12) MER21C|LTR|ERVL -124057 NR_125894 101928314 Hs.566023 NR_125894 LOC101928314 - uncharacterized LOC101928314 ncRNA 9612 chr14 95461137 95461213 + 0 NA intron (NM_152592, intron 3 of 16) intron (NM_152592, intron 3 of 16) 14661 NM_152592 161176 Hs.41502 NM_024633 ENSG00000176438 SYNE3 C14orf139|C14orf49|LINC00341|NCRNA00341|NET53|Nesp3 spectrin repeat containing nuclear envelope family member 3 protein-coding 2223 chr1 184424302 184424406 + 0 NA intron (NM_030806, intron 1 of 5) MIR3|SINE|MIR 37338 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 15053 chr2 14020223 14020261 + 0 NA Intergenic AluSx|SINE|Alu 380716 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 14028 chr19 7943739 7943917 + 0 NA promoter-TSS (NM_006351) promoter-TSS (NM_006351) -5 NM_006351 10469 Hs.465784 NM_006351 ENSG00000104980 TIMM44 TIM44 translocase of inner mitochondrial membrane 44 protein-coding 19417 chr3 42652836 42652934 + 0 NA promoter-TSS (NM_145166) promoter-TSS (NM_145166) -799 NM_145166 92999 Hs.409561 NM_145166 ENSG00000114853 ZBTB47 ZNF651 zinc finger and BTB domain containing 47 protein-coding 3380 chr10 21315929 21316040 + 0 NA Intergenic Intergenic 141682 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 19034 chr22 46754519 46754623 + 0 NA Intergenic Intergenic -8046 NM_001284303 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 11711 chr16 81077167 81077271 + 0 NA promoter-TSS (NM_001100873) promoter-TSS (NM_001100873) 48 NM_001100873 123775 Hs.658684 NM_152337 ENSG00000166455 C16orf46 - chromosome 16 open reading frame 46 protein-coding 9058 chr14 55411750 55411895 + 0 NA promoter-TSS (NM_014924) promoter-TSS (NM_014924) 36 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 4292 chr10 103918235 103918339 + 0 NA promoter-TSS (NM_024928) promoter-TSS (NM_024928) 0 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1, CST complex subunit protein-coding 31157 chrX 151984386 151984456 + 0 NA Intergenic Intergenic -9742 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 27631 chr8 29511699 29511749 + 0 NA Intergenic LTR16D|LTR|ERVL -160974 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 19208 chr3 15205949 15206100 + 0 NA promoter-TSS (NM_014296) promoter-TSS (NM_014296) -65 NR_027927 344875 Hs.722756 NR_027927 ENSG00000230524 COL6A4P1 COL6A4|COL6A4P|DIVA|DVWA|VWA6 collagen type VI alpha 4 pseudogene 1 pseudo 19449 chr3 46163382 46163539 + 0 NA Intergenic L1PA12|LINE|L1 44881 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 2664 chr1 214281570 214281674 + 0 NA intron (NM_020197, intron 1 of 11) CpG 400 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 8081 chr13 32829934 32830038 + 0 NA intron (NR_047020, intron 4 of 4) intron (NR_047020, intron 4 of 4) 81666 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 4245 chr10 102152193 102152305 + 0 NA promoter-TSS (NM_001284388) promoter-TSS (NM_001284388) 73 NM_001284389 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 896 chr1 54167920 54168024 + 0 NA Intergenic Intergenic -14966 NM_201546 200008 Hs.568555 NM_201546 ENSG00000157211 CDCP2 - CUB domain containing protein 2 protein-coding 29568 chr9 93160048 93160194 + 0 NA Intergenic Intergenic -24809 NM_006648 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 3530 chr10 31928805 31928917 + 0 NA promoter-TSS (NM_001270695) promoter-TSS (NM_001270695) 15 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 20230 chr3 136995008 136995146 + 0 NA intron (NM_144717, intron 5 of 6) intron (NM_144717, intron 5 of 6) 37212 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 5539 chr11 67032957 67033100 + 0 NA intron (NM_001318773, intron 3 of 8) intron (NM_001318773, intron 3 of 8) 9683 NM_001318775 91683 Hs.287636 NM_177963 ENSG00000173227 SYT12 SYT11|sytXII synaptotagmin 12 protein-coding 23185 chr5 130898013 130898117 + 0 NA Intergenic L1PA3|LINE|L1 267283 NR_073488 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 22572 chr5 57441644 57441781 + 0 NA Intergenic Intergenic 41097 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 13351 chr18 26487634 26487786 + 0 NA intron (NM_001258222, intron 2 of 4) intron (NM_001258222, intron 2 of 4) 60826 NM_001142730 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 8143 chr13 40116182 40116207 + 0 NA Intergenic Intergenic -65615 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 18036 chr20 41476329 41476433 + 0 NA intron (NM_032221, intron 16 of 36) intron (NM_032221, intron 16 of 36) -109523 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 6470 chr12 4143015 4143182 + 0 NA Intergenic Intergenic -130638 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 19127 chr3 8869860 8869964 + 0 NA Intergenic L2b|LINE|L2 93563 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18, E3 ubiquitin protein ligase protein-coding 21021 chr3 194633622 194633709 + 0 NA promoter-TSS (NM_001011655) promoter-TSS (NM_001011655) -244 NM_001166306 93109 Hs.478729 NM_138399 ENSG00000145014 TMEM44 - transmembrane protein 44 protein-coding 16856 chr2 192500863 192500967 + 0 NA Intergenic LTR1D|LTR|ERV1 -248930 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1, prostate-specific transcript (non-protein coding) ncRNA 9341 chr14 73136407 73136459 + 0 NA promoter-TSS (NM_000021) promoter-TSS (NM_000021) -2 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 5045 chr11 27392844 27392948 + 0 NA intron (NM_001346432, intron 1 of 16) intron (NM_001346432, intron 1 of 16) -29648 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 3609 chr10 42960574 42960739 + 0 NA Intergenic Intergenic 20851 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 27886 chr8 57225523 57225710 + 0 NA intron (NR_038235, intron 8 of 9).2 Tigger1|DNA|TcMar-Tigger 7340 NR_038235 100507651 Hs.371831 NR_038235 ENSG00000253301 LINC01606 - long intergenic non-protein coding RNA 1606 ncRNA 21303 chr4 39527509 39527642 + 0 NA promoter-TSS (NM_003359) promoter-TSS (NM_003359) 23 NM_003359 7358 Hs.572518 NM_003359 ENSG00000109814 UGDH GDH|UDP-GlcDH|UDPGDH|UGD UDP-glucose 6-dehydrogenase protein-coding 16328 chr2 131105278 131105297 + 0 NA 5' UTR (NM_001100623, exon 1 of 8) 5' UTR (NM_001100623, exon 1 of 8) 440 NM_017958 55041 Hs.469944 NM_017958 ENSG00000115762 PLEKHB2 EVT2 pleckstrin homology domain containing B2 protein-coding 15448 chr2 43520025 43520136 + 0 NA intron (NR_144316, intron 22 of 36) intron (NR_144316, intron 22 of 36) 75894 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA, armadillo repeat containing protein-coding 14877 chr19 58476016 58476166 + 0 NA promoter-TSS (NM_017908) promoter-TSS (NM_017908) -73 NM_017908 55663 Hs.710284 NM_017908 ENSG00000083838 ZNF446 ZKSCAN20|ZSCAN30|ZSCAN52 zinc finger protein 446 protein-coding 10405 chr15 71791328 71791432 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR -19168 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 17505 chr20 4443196 4443358 + 0 NA Intergenic Intergenic -194265 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 1672 chr1 150236154 150236305 + 0 NA promoter-TSS (NM_001136478) promoter-TSS (NM_001136478) -73 NM_001280560 81611 Hs.656466 NM_030920 ENSG00000143401 ANP32E LANP-L|LANPL acidic nuclear phosphoprotein 32 family member E protein-coding 13855 chr19 1180553 1180688 + 0 NA Intergenic Intergenic -6337 NM_014963 22904 Hs.408708 NM_014963 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 protein-coding 20397 chr3 150725672 150725756 + 0 NA Intergenic LTR86B1|LTR|ERVL 13271 NR_121657 101928105 NR_121657 LOC101928105 - uncharacterized LOC101928105 ncRNA 6225 chr11 121476604 121476708 + 0 NA intron (NM_003105, intron 2 of 47) intron (NM_003105, intron 2 of 47) 24453 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 31212 chrY 11318042 11318186 + 0 NA Intergenic BSR/Beta|Satellite|Satellite 1103476 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 15328 chr2 32938160 32938202 + 0 NA TTS (NR_027099) TTS (NR_027099) -9121 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 23014 chr5 111550731 111550835 + 0 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -38186 NM_001308058 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 3941 chr10 77392935 77393106 + 0 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 42148 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 2768 chr1 222288186 222288332 + 0 NA Intergenic MER54B|LTR|ERVL 259843 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 9526 chr14 89186392 89186496 + 0 NA intron (NM_005197, intron 4 of 5) intron (NM_005197, intron 4 of 5) 230666 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 28403 chr8 106778613 106778703 + 0 NA Intergenic MIRb|SINE|MIR -8414 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 2269 chr1 192539856 192539999 + 0 NA Intergenic Intergenic -35800 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 1102 chr1 69433128 69433232 + 0 NA Intergenic Intergenic -134005 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 7027 chr12 52230574 52230678 + 0 NA Intergenic Intergenic -2544 NM_005556 3855 Hs.411501 NM_005556 ENSG00000135480 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 25848 chr7 23020875 23021005 + 0 NA Intergenic Intergenic -6789 NM_032581 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 6481 chr12 5268307 5268496 + 0 NA Intergenic Intergenic -25250 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 1478 chr1 109426435 109426585 + 0 NA promoter-TSS (NM_001199774) promoter-TSS (NM_001199774) -24 NM_001199774 5686 Hs.485246 NM_002790 ENSG00000143106 PSMA5 PSC5|ZETA proteasome subunit alpha 5 protein-coding 439 chr1 26921642 26921786 + 0 NA promoter-TSS (NM_006600) promoter-TSS (NM_006600) -8 NM_006600 10726 Hs.263812 NM_006600 ENSG00000090273 NUDC HNUDC|MNUDC|NPD011 nuclear distribution C, dynein complex regulator protein-coding 19078 chr3 4417042 4417162 + 0 NA intron (NM_182760, intron 6 of 8) intron (NM_182760, intron 6 of 8) 50180 NM_001164674 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 15564 chr2 54838732 54838836 + 0 NA intron (NM_001039753, intron 6 of 40) intron (NM_001039753, intron 6 of 40) 113772 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - echinoderm microtubule associated protein like 6 protein-coding 8676 chr14 20999082 20999212 + 0 NA promoter-TSS (NM_001256588) promoter-TSS (NM_001256588) 16 NR_110139 101929718 Hs.706252 NR_110139 ENSG00000258471 LOC101929718 - uncharacterized LOC101929718 ncRNA 19008 chr22 45626461 45626570 + 0 NA Intergenic Intergenic -20868 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 19794 chr3 103381486 103381590 + 0 NA Intergenic Intergenic 142578 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 23469 chr5 148910906 148911010 + 0 NA Intergenic Intergenic 84365 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 12299 chr17 30378806 30378923 + 0 NA promoter-TSS (NM_001304) promoter-TSS (NM_001304) -60 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 21028 chr3 194870900 194871004 + 0 NA Intergenic Intergenic 162531 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 10255 chr15 63122378 63122443 + 0 NA intron (NM_001288585, intron 1 of 4) CpG 610 NM_001288585 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 28166 chr8 89814916 89815015 + 0 NA Intergenic L2c|LINE|L2 57218 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 18 chr1 1399450 1399479 + 0 NA promoter-TSS (NM_030937) promoter-TSS (NM_030937) -66 NR_015434 148413 Hs.741357 NR_015434 ENSG00000224870 LOC148413 - uncharacterized LOC148413 ncRNA 376 chr1 24317182 24317349 + 0 NA Intergenic Intergenic -2057 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 24456 chr6 36027539 36027686 + 0 NA promoter-TSS (NM_001315) promoter-TSS (NM_001315) -65 NM_001315 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 15050 chr2 13523357 13523461 + 0 NA Intergenic LTR23|LTR|ERV1 -516396 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 28294 chr8 100310163 100310317 + 0 NA promoter-TSS (NM_183419) promoter-TSS (NM_183419) -74 NM_183419 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 6598 chr12 10716827 10716938 + 0 NA intron (NM_001145426, intron 3 of 8) intron (NM_001145426, intron 3 of 8) 6472 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 5826 chr11 88680947 88681051 + 0 NA intron (NM_000842, intron 3 of 8) intron (NM_000842, intron 3 of 8) 176423 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 609 chr1 35202209 35202345 + 0 NA Intergenic Intergenic -9132 NR_136703 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 22797 chr5 81420369 81420473 + 0 NA 3' UTR (NM_001256732, exon 17 of 17) 3' UTR (NM_001256732, exon 17 of 17) -26252 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 19626 chr3 64977552 64977562 + 0 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -289868 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 15864 chr2 77009520 77009595 + 0 NA non-coding (NR_110284, exon 4 of 4) non-coding (NR_110284, exon 4 of 4) 23592 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 31175 chrX 153928355 153928459 + 0 NA Intergenic CpG -2147 NM_001666 393 Hs.701324 NM_001666 ENSG00000089820 ARHGAP4 C1|RGC1|RhoGAP4|SrGAP4|p115 Rho GTPase activating protein 4 protein-coding 28616 chr8 126557862 126558016 + 0 NA intron (NM_174911, intron 1 of 1) CpG 527 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 27468 chr8 19003747 19003851 + 0 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 9887 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 19017 chr22 46007168 46007283 + 0 NA non-coding (NR_027240, exon 1 of 1) non-coding (NR_027240, exon 1 of 1) 609 NR_027240 730668 Hs.640071 NR_027240 ENSG00000280424 LOC730668 - dynein heavy chain -like pseudogene pseudo 7105 chr12 55817873 55817988 + 0 NA promoter-TSS (NR_026722) promoter-TSS (NR_026722) -92 NM_014182 29095 Hs.534450 NM_014182 ENSG00000123353 ORMDL2 HSPC160|MST095|MSTP095|adoplin-2 ORMDL sphingolipid biosynthesis regulator 2 protein-coding 29891 chr9 112332938 112333063 + 0 NA promoter-TSS (NM_001244898) promoter-TSS (NM_001244898) 26 NM_001244898 9991 Hs.269988 NM_005156 ENSG00000119314 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 4790 chr11 9265316 9265412 + 0 NA promoter-TSS (NM_001243254) promoter-TSS (NM_001243254) -38 NM_015213 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A RAB6IP1 DENN domain containing 5A protein-coding 3652 chr10 48215589 48215736 + 0 NA intron (NM_001018071, intron 12 of 28) intron (NM_001018071, intron 12 of 28) 36095 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 9278 chr14 68774962 68774965 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 18951 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 29097 chr9 37800635 37800769 + 0 NA promoter-TSS (NM_024345) promoter-TSS (NM_024345) -84 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 25254 chr6 142947540 142947644 + 0 NA Intergenic CpG-24066 -2391 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 13526 chr18 48308177 48308281 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) 101193 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 22618 chr5 61917415 61917550 + 0 NA Intergenic Intergenic -181784 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 22952 chr5 102715601 102715705 + 0 NA Intergenic Intergenic -39130 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 148 chr1 10210361 10210465 + 0 NA promoter-TSS (NM_183416) promoter-TSS (NM_183416) -293 NM_183416 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 6453 chr12 2885445 2885549 + 0 NA exon (NM_001252499, exon 2 of 3) exon (NM_001252499, exon 2 of 3) -5370 NM_001160408 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 tubby like protein 3 protein-coding 18419 chr21 14383188 14383320 + 0 NA promoter-TSS (NM_006948) promoter-TSS (NM_006948) -66 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 7709 chr12 117261364 117261468 + 0 NA intron (NM_001204218, intron 13 of 29) L2a|LINE|L2 43636 NM_001204213 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 8383 chr13 76917847 76917888 + 0 NA Intergenic L1PBa1|LINE|L1 -10584 NR_026983 690 Hs.567241 NR_026983 BTF3P11 BTF3L1|HUMBTFB|OCIF|OPG|TNFRSF11B basic transcription factor 3 pseudogene 11 pseudo 30223 chr9 129202864 129202978 + 0 NA Intergenic CpG -24660 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5 like protein-coding 23871 chr6 1671055 1671159 + 0 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 60661 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 22550 chr5 55601451 55601551 + 0 NA Intergenic Intergenic -66423 NM_176895 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 20798 chr3 183370894 183371024 + 0 NA intron (NM_015078, intron 3 of 29) intron (NM_015078, intron 3 of 29) 57310 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 17981 chr20 38201561 38201628 + 0 NA Intergenic Intergenic -35016 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 726 chr1 41954680 41954859 + 0 NA intron (NR_038261, intron 1 of 3) MIRb|SINE|MIR -35944 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 2703 chr1 218285146 218285250 + 0 NA promoter-TSS (NM_016052) promoter-TSS (NM_016052) -89 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 18017 chr20 40990653 40990814 + 0 NA intron (NM_001318197, intron 1 of 3) intron (NM_001318197, intron 1 of 3) 9972 NM_001318196 100128988 Hs.636443 NM_001318196 LOC100128988 - uncharacterized LOC100128988 protein-coding 22130 chr4 189940802 189940944 + 0 NA promoter-TSS (NM_004477).2 promoter-TSS (NM_004477).2 54 NM_004477 2483 Hs.203772 NM_004477 ENSG00000109536 FRG1 FRG1A|FSG1 FSHD region gene 1 protein-coding 17795 chr20 24034850 24034977 + 0 NA Intergenic Intergenic -46134 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 6659 chr12 14240305 14240401 + 0 NA Intergenic Intergenic -125279 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 157 chr1 10796581 10796735 + 0 NA promoter-TSS (NM_001079843) promoter-TSS (NM_001079843) 18 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 2009 chr1 167152232 167152336 + 0 NA Intergenic Intergenic 43521 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 1909 chr1 160124990 160125066 + 0 NA intron (NM_000702, intron 6 of 22) intron (NM_000702, intron 6 of 22) 9298 NM_000702 477 Hs.34114 NM_000702 ENSG00000018625 ATP1A2 FHM2|MHP2 ATPase Na+/K+ transporting subunit alpha 2 protein-coding 20074 chr3 125647743 125647849 + 0 NA Intergenic Intergenic -52259 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 7179 chr12 58414400 58414504 + 0 NA Intergenic MER3|DNA|hAT-Charlie -177250 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 22905 chr5 95617124 95617228 + 0 NA Intergenic HAL1|LINE|L1 -3100 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 28695 chr8 130728088 130728222 + 0 NA Intergenic L2a|LINE|L2 -284495 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 2627 chr1 212261021 212261125 + 0 NA intron (NR_125984, intron 1 of 3) intron (NR_125984, intron 1 of 3) 23948 NR_125984 101929541 Hs.632493 NR_125982 ENSG00000226251 LOC101929541 - uncharacterized LOC101929541 ncRNA 22243 chr5 14026051 14026146 + 0 NA Intergenic Intergenic -81618 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 1213 chr1 85314109 85314213 + 0 NA Intergenic Intergenic -37257 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 13917 chr19 3036348 3036425 + 0 NA intron (NM_001144761, intron 2 of 19) CpG -6772 NM_001144762 7089 Hs.332173 NM_003260 ENSG00000065717 TLE2 ESG|ESG2|GRG2 transducin like enhancer of split 2 protein-coding 29561 chr9 92790922 92791026 + 0 NA Intergenic MER21-int|LTR|ERVL 17113 NR_136301 101929748 Hs.551296 NR_136301 LOC101929748 - uncharacterized LOC101929748 ncRNA 22429 chr5 40447117 40447221 + 0 NA Intergenic Intergenic -232761 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 17752 chr20 21436329 21436387 + 0 NA Intergenic Intergenic -38949 NM_033176 644524 Hs.456662 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 14830 chr19 56295688 56295834 + 0 NA intron (NM_001322061, intron 2 of 6) intron (NM_001322061, intron 2 of 6) 18803 NM_001322069 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 22529 chr5 54310535 54310639 + 0 NA promoter-TSS (NM_019087) promoter-TSS (NM_019087) -14 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 27324 chr8 6334899 6335003 + 0 NA Intergenic Intergenic 71597 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 27049 chr7 134532285 134532415 + 0 NA intron (NM_020299, intron 3 of 9) intron (NM_020299, intron 3 of 9) 4758 NM_020299 57016 Hs.116724 NM_020299 ENSG00000198074 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1 member B10 protein-coding 6323 chr11 128472406 128472510 + 0 NA intron (NM_001330451, intron 5 of 6) intron (NM_001330451, intron 5 of 6) 49852 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 25032 chr6 113352207 113352302 + 0 NA Intergenic Intergenic 297821 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 6209 chr11 120316905 120317064 + 0 NA intron (NM_014352, intron 11 of 12) intron (NM_014352, intron 11 of 12) -8145 NM_174926 219902 Hs.643516 NM_174926 ENSG00000181264 TMEM136 - transmembrane protein 136 protein-coding 6967 chr12 49130762 49130845 + 0 NA intron (NM_006082, intron 1 of 3) CpG 718 NM_006082 10376 Hs.524390 NM_006082 ENSG00000123416 TUBA1B K-ALPHA-1 tubulin alpha 1b protein-coding 9209 chr14 64726670 64726765 + 0 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 22309 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 21106 chr4 1347057 1347193 + 0 NA promoter-TSS (NM_001317934) promoter-TSS (NM_001317934) -141 NM_001317934 57654 Hs.380475 NM_020894 ENSG00000163945 UVSSA KIAA1530|UVSS3 UV stimulated scaffold protein A protein-coding 19059 chr22 50562916 50563042 + 0 NA promoter-TSS (NM_001123225) promoter-TSS (NM_001123225) -27 NM_001123225 644186 Hs.535660 NM_001123225 ENSG00000217442 SYCE3 C22orf41|THEG2 synaptonemal complex central element protein 3 protein-coding 8421 chr13 80040735 80040870 + 0 NA Intergenic Intergenic 29725 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 6080 chr11 111982161 111982267 + 0 NA intron (NM_033425, intron 2 of 15) intron (NM_033425, intron 2 of 15) 4905 NM_033425 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 1990 chr1 165598208 165598317 + 0 NA Intergenic CpG -16107 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LOC400794 - uncharacterized LOC400794 ncRNA 10319 chr15 66842437 66842527 + 0 NA Intergenic Intergenic 114033 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 26545 chr7 87628222 87628313 + 0 NA promoter-TSS (NM_001134405) promoter-TSS (NM_001134405) -146 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 12032 chr17 7307219 7307325 + 0 NA promoter-TSS (NM_001970) promoter-TSS (NM_001970) -265 NM_001970 1984 Hs.534314 NM_001970 ENSG00000132507 EIF5A EIF-5A|EIF5A1|eIF5AI eukaryotic translation initiation factor 5A protein-coding 7699 chr12 116813385 116813489 + 0 NA intron (NM_032814, intron 7 of 10) L2c|LINE|L2 67990 NR_073189 8739 Hs.87247 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 5235 chr11 46687554 46687692 + 0 NA intron (NM_004308, intron 4 of 12) intron (NM_004308, intron 4 of 12) 13042 NM_004308 392 Hs.138860 NM_004308 ENSG00000175220 ARHGAP1 CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP Rho GTPase activating protein 1 protein-coding 24241 chr6 26538271 26538444 + 0 NA promoter-TSS (NM_006353) promoter-TSS (NM_006353) 13 NM_006353 10473 Hs.236774 NM_006353 ENSG00000182952 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 17307 chr2 234250113 234250178 + 0 NA Intergenic Intergenic 199443 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 15133 chr2 20051675 20051856 + 0 NA 5' UTR (NM_014713, exon 1 of 7) 5' UTR (NM_014713, exon 1 of 7) 263 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 14601 chr19 46784815 46784944 + 0 NA promoter-TSS (NM_001145145) promoter-TSS (NM_001145145) -2 NM_001145145 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 14171 chr19 13880221 13880328 + 0 NA intron (NM_001098622, intron 1 of 1) CpG 3025 NM_001098622 342977 Hs.127982 NM_001098622 ENSG00000187556 NANOS3 NANOS1L|NOS3|ZC2HC12C nanos C2HC-type zinc finger 3 protein-coding 13000 chr17 75205358 75205497 + 0 NA promoter-TSS (NM_001303276) promoter-TSS (NM_001303276) -9 NM_001330472 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|Nup75 nucleoporin 85 protein-coding 20421 chr3 152266767 152266871 + 0 NA non-coding (NR_027037, exon 2 of 2) non-coding (NR_027037, exon 2 of 2) -1649 NM_001314057 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 9022 chr14 54106012 54106116 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -149173 NM_001202 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 24124 chr6 17741558 17741740 + 0 NA Intergenic L1M2a|LINE|L1 34606 NR_134618 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 24045 chr6 11846127 11846231 + 0 NA Intergenic Intergenic -67132 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 27607 chr8 27837797 27837961 + 0 NA 5' UTR (NM_018492, exon 1 of 8) 5' UTR (NM_018492, exon 1 of 8) 216 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 12785 chr17 59565539 59565623 + 0 NA promoter-TSS (NM_001166301) promoter-TSS (NM_001166301) 56 NM_024612 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 12078 chr17 8249245 8249401 + 0 NA promoter-TSS (NM_012393) promoter-TSS (NM_012393) 45 NM_012393 5198 Hs.573976 NM_012393 ENSG00000178921 PFAS FGAMS|FGAR-AT|FGARAT|PURL phosphoribosylformylglycinamidine synthase protein-coding 6205 chr11 120135925 120136029 + 0 NA intron (NM_012101, intron 1 of 8) intron (NM_012101, intron 1 of 8) 2178 NM_012101 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 19802 chr3 105526819 105526923 + 0 NA intron (NM_001243281, intron 3 of 13) intron (NM_001243281, intron 3 of 13) 160158 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 18926 chr22 39994991 39995004 + 0 NA promoter-TSS (NM_138435) promoter-TSS (NM_138435) 48 NM_138435 113828 Hs.197680 NM_138435 ENSG00000133477 FAM83F - family with sequence similarity 83 member F protein-coding 17952 chr20 36773630 36773734 + 0 NA promoter-TSS (NM_001145316) promoter-TSS (NM_001145316) 69 NM_024918 79980 Hs.632268 NM_024918 ENSG00000149636 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1 homolog, MIS12 kinetochore complex component protein-coding 3323 chr10 14653758 14653862 + 0 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -49392 NM_001282696 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 25555 chr7 2403451 2403555 + 0 NA promoter-TSS (NM_001243794) promoter-TSS (NM_001243794) -57 NM_001243795 55501 Hs.744987 NM_018641 ENSG00000136213 CHST12 C4S-2|C4ST-2|C4ST2 carbohydrate sulfotransferase 12 protein-coding 20362 chr3 149225502 149225515 + 0 NA Intergenic Intergenic -3463 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin protein-coding 19952 chr3 117019264 117019368 + 0 NA Intergenic Intergenic 97885 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 21366 chr4 53366017 53366167 + 0 NA promoter-TSS (NM_152540) promoter-TSS (NM_152540) -17 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 24121 chr6 17600336 17600471 + 0 NA 5' UTR (NM_016255, exon 1 of 5) 5' UTR (NM_016255, exon 1 of 5) 116 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 20449 chr3 154121375 154121504 + 0 NA promoter-TSS (NR_037901) promoter-TSS (NR_037901) 79 NM_015595 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 9449 chr14 78566690 78566808 + 0 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 163018 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 20216 chr3 136142733 136142893 + 0 NA intron (NM_001190447, intron 12 of 12) intron (NM_001190447, intron 12 of 12) 51655 NM_001145417 55167 Hs.18631 NM_018133 ENSG00000174579 MSL2 MSL-2|MSL2L1|RNF184 male-specific lethal 2 homolog (Drosophila) protein-coding 25182 chr6 134909019 134909078 + 0 NA Intergenic Intergenic 41074 NM_170771 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 17308 chr2 234258257 234258430 + 0 NA Intergenic Intergenic 207641 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 25469 chr6 166381989 166382093 + 0 NA intron (NR_073093, intron 1 of 4) CpG 972 NR_073093 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|dJ68L15.3 mitochondrial pyruvate carrier 1 protein-coding 5141 chr11 34627348 34627500 + 0 NA intron (NM_012153, intron 1 of 8) intron (NM_012153, intron 1 of 8) -5040 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 20578 chr3 165643684 165643829 + 0 NA Intergenic Intergenic 193716 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE CHE1|CHE2|E1 butyrylcholinesterase protein-coding 10362 chr15 69594451 69594568 + 0 NA intron (NR_126438, intron 1 of 3) intron (NR_126438, intron 1 of 3) 2309 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000259641 PCAT29 - prostate cancer associated transcript 29 (non-protein coding) ncRNA 19827 chr3 107999463 107999599 + 0 NA Intergenic LTR39|LTR|ERV1 91557 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 15004 chr2 10936365 10936469 + 0 NA Intergenic Intergenic 24480 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 14842 chr19 57363238 57363323 + 0 NA promoter-TSS (NM_173631) promoter-TSS (NM_173631) -155 NM_173631 284306 Hs.446620 NM_173631 ENSG00000152433 ZNF547 - zinc finger protein 547 protein-coding 952 chr1 58883470 58883574 + 0 NA intron (NR_108106, intron 1 of 1) L3|LINE|CR1 98371 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 26203 chr7 46291131 46291235 + 0 NA Intergenic Intergenic -369911 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 6758 chr12 26114223 26114370 + 0 NA Intergenic CpG 10774 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 4804 chr11 9838996 9839117 + 0 NA promoter-TSS (NR_120539) promoter-TSS (NR_120539) -86 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 4498 chr10 120732265 120732363 + 0 NA Intergenic Intergenic -118861 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 15739 chr2 69387226 69387360 + 0 NA promoter-TSS (NM_002056) promoter-TSS (NM_002056) -39 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 9636 chr14 97713188 97713234 + 0 NA Intergenic MIR1_Amn|SINE|MIR -26553 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LOC100129345 - uncharacterized LOC100129345 ncRNA 26244 chr7 48390147 48390250 + 0 NA intron (NM_152701, intron 37 of 61) intron (NM_152701, intron 37 of 61) 218738 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 21374 chr4 54902448 54902552 + 0 NA Intergenic Intergenic 223095 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 26064 chr7 36658700 36658804 + 0 NA intron (NM_001637, intron 4 of 20) MER81|DNA|hAT-Blackjack -58632 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 29575 chr9 93827511 93827615 + 0 NA Intergenic Intergenic 8206 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 4158 chr10 97498623 97498775 + 0 NA promoter-TSS (NM_001289403) promoter-TSS (NM_001289403) -90 NM_001289404 64210 Hs.500721 NM_022362 ENSG00000155229 MMS19 MET18|MMS19L|hMMS19 MMS19 homolog, cytosolic iron-sulfur assembly component protein-coding 25264 chr6 143843165 143843336 + 0 NA promoter-TSS (NM_001329953) promoter-TSS (NM_001329953) -23 NM_001329953 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 19344 chr3 36993189 36993218 + 0 NA promoter-TSS (NM_001167619) promoter-TSS (NM_001167619) 101 NM_014805 9852 Hs.28020 NM_014805 ENSG00000178567 EPM2AIP1 - EPM2A interacting protein 1 protein-coding 19273 chr3 25664873 25665054 + 0 NA promoter-TSS (NR_039644) promoter-TSS (NR_039644) -24 NR_039644 100616477 NR_039644 ENSG00000077097 MIR4442 mir-4442 microRNA 4442 ncRNA 20859 chr3 186097738 186097842 + 0 NA intron (NM_004454, intron 5 of 12) intron (NM_004454, intron 5 of 12) 11322 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 16236 chr2 121075228 121075332 + 0 NA Intergenic Intergenic 209922 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 29043 chr9 33458643 33458747 + 0 NA Intergenic Intergenic 9240 NR_106910 102465512 NR_106910 ENSG00000275651 MIR6851 hsa-mir-6851 microRNA 6851 ncRNA 24935 chr6 97948007 97948168 + 0 NA Intergenic Intergenic -76444 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 16733 chr2 178282241 178282345 + 0 NA intron (NM_001201482, intron 1 of 23) intron (NM_001201482, intron 1 of 23) -37951 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 22573 chr5 57494785 57494940 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -12053 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 20224 chr3 136952474 136952561 + 0 NA TTS (NM_001291999) TTS (NM_001291999) -5348 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 26978 chr7 128739191 128739320 + 0 NA promoter-TSS (NR_074086) promoter-TSS (NR_074086) -37 NM_001199672 813 Hs.7753 NM_001219 ENSG00000128595 CALU - calumenin protein-coding 6393 chr11 132902370 132902474 + 0 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 41215 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 26291 chr7 54615615 54615719 + 0 NA Intergenic Intergenic 58697 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 5949 chr11 100776525 100776563 + 0 NA intron (NM_152432, intron 2 of 23) intron (NM_152432, intron 2 of 23) -88589 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 30496 chrX 12610144 12610248 + 0 NA intron (NM_014728, intron 3 of 16) intron (NM_014728, intron 3 of 16) -181159 NM_002765 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 12525 chr17 42667635 42667717 + 0 NA TTS (NR_073574) TTS (NR_073574) 8414 NR_073574 79990 Hs.632251 NM_024927 ENSG00000068137 PLEKHH3 - pleckstrin homology, MyTH4 and FERM domain containing H3 protein-coding 12492 chr17 41655807 41655937 + 0 NA Intergenic Intergenic -15673 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 8729 chr14 23301829 23301933 + 0 NA intron (NM_001276318, intron 1 of 4) CpG 967 NM_001276318 90673 Hs.601513 NM_001276318 ENSG00000235194 PPP1R3E - protein phosphatase 1 regulatory subunit 3E protein-coding 15385 chr2 38602961 38603015 + 0 NA promoter-TSS (NM_001142650) promoter-TSS (NM_001142650) 48 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 9305 chr14 69999405 69999476 + 0 NA intron (NM_022137, intron 7 of 11) intron (NM_022137, intron 7 of 11) 80777 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 16694 chr2 175168303 175168420 + 0 NA promoter-TSS (NM_001256090) promoter-TSS (NM_001256090) -155 NM_001880 1386 Hs.592510 NM_001880 ENSG00000115966 ATF2 CRE-BP1|CREB-2|CREB2|HB16|TREB7 activating transcription factor 2 protein-coding 16282 chr2 127701334 127701536 + 0 NA 5' UTR (NM_032740, exon 1 of 1) 5' UTR (NM_032740, exon 1 of 1) 412 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 15036 chr2 12456317 12456421 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 257239 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 30868 chrX 87516756 87516860 + 0 NA promoter-TSS (NM_057162) promoter-TSS (NM_057162) -904 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 3948 chr10 77845208 77845354 + 0 NA intron (NM_004747, intron 5 of 31).2 MIR3|SINE|MIR 81309 NM_004747 9231 Hs.652690 NM_004747 ENSG00000151208 DLG5 LP-DLG|P-DLG5|PDLG discs large MAGUK scaffold protein 5 protein-coding 16512 chr2 157898712 157898816 + 0 NA Intergenic Intergenic -22902 NM_001347664 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 30975 chrX 111681062 111681217 + 0 NA promoter-TSS (NM_001324291) promoter-TSS (NM_001324291) 21 NM_001168385 79868 Hs.443061 NM_018466 ENSG00000101901 ALG13 CDG1S|CXorf45|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W ALG13, UDP-N-acetylglucosaminyltransferase subunit protein-coding 7701 chr12 116878675 116878801 + 0 NA intron (NR_073189, intron 1 of 4) CpG 2689 NR_073189 8739 Hs.87247 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 4016 chr10 85643979 85644107 + 0 NA intron (NM_017551, intron 13 of 15) intron (NM_017551, intron 13 of 15) 66312 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 27261 chr7 155230246 155230439 + 0 NA Intergenic Intergenic -67430 NM_001346590 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 24375 chr6 31739788 31739923 + 0 NA promoter-TSS (NM_002441) promoter-TSS (NM_002441) -93 NM_172165 4439 Hs.647011 NM_002441 ENSG00000204410 MSH5 G7|MUTSH5|NG23 mutS homolog 5 protein-coding 10006 chr15 44427003 44427163 + 0 NA promoter-TSS (NM_016396) promoter-TSS (NM_016396) -298 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 25903 chr7 26152135 26152227 + 0 NA promoter-TSS (NM_004289) promoter-TSS (NM_004289) -46 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 7411 chr12 91099013 91099117 + 0 NA Intergenic Intergenic 12700 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 26570 chr7 90579218 90579318 + 0 NA Intergenic MamSINE1|SINE|tRNA-RTE -17094 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 9027 chr14 54252183 54252318 + 0 NA Intergenic Intergenic -144618 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 5695 chr11 77020350 77020445 + 0 NA 3' UTR (NM_001300953, exon 10 of 10) 3' UTR (NM_001300953, exon 10 of 10) -13944 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 18445 chr21 28637191 28637295 + 0 NA Intergenic Intergenic 97925 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 4203 chr10 99906525 99906661 + 0 NA intron (NM_001318327, intron 3 of 13) MLT1F|LTR|ERVL-MaLR 7499 NM_001318327 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 30145 chr9 127452405 127452508 + 0 NA intron (NM_001005374, intron 1 of 24) intron (NM_001005374, intron 1 of 24) 201 NM_001005374 90678 Hs.495188 NM_138361 ENSG00000148356 LRSAM1 CMT2P|RIFLE|TAL leucine rich repeat and sterile alpha motif containing 1 protein-coding 24952 chr6 101080635 101080774 + 0 NA Intergenic Intergenic -199332 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 24942 chr6 99424877 99425018 + 0 NA promoter-TSS (NR_125843) promoter-TSS (NR_125843) 76 NR_125843 101927365 Hs.535847 NR_125843 LOC101927365 - uncharacterized LOC101927365 ncRNA 7163 chr12 57520485 57520614 + 0 NA promoter-TSS (NM_001195057) promoter-TSS (NM_001195057) -32 NM_001195057 1649 Hs.505777 NM_004083 ENSG00000175197 DDIT3 CEBPZ|CHOP|CHOP-10|CHOP10|GADD153 DNA damage inducible transcript 3 protein-coding 11970 chr17 4796034 4796146 + 0 NA promoter-TSS (NM_001270481) promoter-TSS (NM_001270481) -54 NM_002798 5694 Hs.77060 NM_002798 ENSG00000142507 PSMB6 DELTA|LMPY|Y proteasome subunit beta 6 protein-coding 15890 chr2 84958390 84958611 + 0 NA Intergenic Intergenic -12608 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 12742 chr17 56961012 56961116 + 0 NA promoter-TSS (NM_004645) promoter-TSS (NM_004645) -14 NM_004645 8161 Hs.532795 NM_004645 ENSG00000121058 COIL CLN80|p80-coilin coilin protein-coding 18924 chr22 39532935 39533004 + 0 NA promoter-TSS (NM_194326) promoter-TSS (NM_194326) -114 NR_130151 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 24510 chr6 38755999 38756125 + 0 NA exon (NM_001206927, exon 10 of 93) exon (NM_001206927, exon 10 of 93) 40721 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 22652 chr5 66829953 66830057 + 0 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 1229 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 18259 chr20 53869889 53869993 + 0 NA Intergenic Intergenic 5768 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 21108 chr4 1712651 1712813 + 0 NA promoter-TSS (NM_006527) promoter-TSS (NM_006527) 9 NM_001306074 7884 Hs.298345 NM_006527 ENSG00000163950 SLBP HBP stem-loop binding protein protein-coding 258 chr1 17403214 17403318 + 0 NA Intergenic Charlie8|DNA|hAT-Charlie 31070 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 22733 chr5 74762705 74762837 + 0 NA intron (NM_032380, intron 2 of 20) MER44C|DNA|TcMar-Tigger -4220 NM_014886 10412 Hs.482526 NM_014886 ENSG00000164346 NSA2 CDK105|HCL-G1|HCLG1|HUSSY-29|HUSSY29|TINP1 NSA2, ribosome biogenesis homolog protein-coding 28790 chr8 142676107 142676170 + 0 NA intron (NR_033343, intron 1 of 2) intron (NR_033343, intron 1 of 2) -4318 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 28098 chr8 81227635 81227692 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -52820 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 15488 chr2 46616933 46617133 + 0 NA promoter-TSS (NM_014171) promoter-TSS (NM_014171) 79 NM_002643 5281 Hs.468415 NM_002643 ENSG00000151665 PIGF - phosphatidylinositol glycan anchor biosynthesis class F protein-coding 10098 chr15 51874789 51874943 + 0 NA intron (NM_014547, intron 3 of 9) intron (NM_014547, intron 3 of 9) 45238 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 13316 chr18 23106633 23106737 + 0 NA Intergenic Intergenic -27879 NM_001256438 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 29591 chr9 94783193 94783314 + 0 NA intron (NM_001193329, intron 2 of 15) intron (NM_001193329, intron 2 of 15) 23604 NM_001193329 84909 Hs.434253 NM_032823 ENSG00000148120 C9orf3 AOPEP|AP-O|APO|C90RF3|ONPEP chromosome 9 open reading frame 3 protein-coding 18303 chr20 56808852 56808956 + 0 NA Intergenic Intergenic 179602 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 17820 chr20 25485129 25485233 + 0 NA intron (NM_025176, intron 13 of 23) intron (NM_025176, intron 13 of 23) 77498 NM_021067 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 PSF1 GINS complex subunit 1 protein-coding 30832 chrX 73944236 73944340 + 0 NA promoter-TSS (NR_024582) promoter-TSS (NR_024582) -36 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator (non-protein coding) ncRNA 20446 chr3 153599851 153599955 + 0 NA Intergenic Intergenic 115408 NM_001101337 152118 Hs.58586 NM_001101337 C3orf79 - chromosome 3 open reading frame 79 protein-coding 15920 chr2 86105533 86105677 + 0 NA promoter-TSS (NM_017952) promoter-TSS (NM_017952) 550 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 27432 chr8 15537992 15538094 + 0 NA Intergenic Intergenic -2044 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|N33|OST3A tumor suppressor candidate 3 protein-coding 141 chr1 9843679 9843792 + 0 NA Intergenic Intergenic -19209 NM_014944 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 13624 chr18 57088200 57088236 + 0 NA Intergenic Intergenic -16099 NR_048536 100885779 Hs.742426 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 26271 chr7 50832835 50833010 + 0 NA Intergenic Intergenic -39460 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 18676 chr22 22111401 22111505 + 0 NA Intergenic Intergenic -67519 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal-like, pseudogene pseudo 30487 chrX 11188677 11188781 + 0 NA exon (NM_001287242, exon 4 of 13) exon (NM_001287242, exon 4 of 13) 77246 NM_013423 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 22402 chr5 38636783 38636887 + 0 NA intron (NR_103554, intron 2 of 8) MER21-int|LTR|ERVL -41430 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 23819 chr5 179559513 179559719 + 0 NA promoter-TSS (NM_001040451) promoter-TSS (NM_001040451) -76 NM_001040451 80230 Hs.306769 NM_025158 ENSG00000176783 RUFY1 RABIP4|ZFYVE12 RUN and FYVE domain containing 1 protein-coding 17014 chr2 208807831 208807935 + 0 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 265241 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 14777 chr19 54137183 54137287 + 0 NA promoter-TSS (NM_014516).2 promoter-TSS (NM_014516).2 -485 NM_014516 4849 Hs.343571 NM_014516 ENSG00000088038 CNOT3 LENG2|NOT3|NOT3H CCR4-NOT transcription complex subunit 3 protein-coding 29117 chr9 63817422 63817570 + 0 NA Intergenic LSAU|Satellite|Satellite -2078 NR_039689 100616194 NR_039689 ENSG00000266017 MIR4477B - microRNA 4477b ncRNA 13848 chr19 1028122 1028280 + 0 NA intron (NM_001303501, intron 1 of 6) MIRc|SINE|MIR 1926 NM_001303501 1265 Hs.651512 NM_004368 ENSG00000064666 CNN2 - calponin 2 protein-coding 30693 chrX 48801833 48802051 + 0 NA promoter-TSS (NM_001321229) promoter-TSS (NM_001321229) -7 NM_001321229 10013 Hs.6764 NM_006044 ENSG00000094631 HDAC6 CPBHM|HD6|JM21|PPP1R90 histone deacetylase 6 protein-coding 15636 chr2 62196140 62196244 + 0 NA promoter-TSS (NM_006577) promoter-TSS (NM_006577) 65 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 10911 chr16 2969121 2969163 + 0 NA promoter-TSS (NM_001284511) promoter-TSS (NM_001284511) -103 NM_001284512 124222 Hs.351474 NM_152341 ENSG00000162073 PAQR4 - progestin and adipoQ receptor family member 4 protein-coding 30781 chrX 65872037 65872188 + 0 NA Intergenic L1PA11|LINE|L1 -146758 NR_029637 407008 NR_029637 ENSG00000274536 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 18688 chr22 23717295 23717415 + 0 NA promoter-TSS (NR_024448) promoter-TSS (NR_024448) 68 NR_024448 91316 Hs.148656 NR_024448 ENSG00000228315 GUSBP11 - glucuronidase, beta pseudogene 11 pseudo 11722 chr16 81523496 81523574 + 0 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -10367 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 17582 chr20 10557823 10557927 + 0 NA intron (NM_001009608, intron 3 of 7) intron (NM_001009608, intron 3 of 7) 91820 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 19183 chr3 13485216 13485369 + 0 NA intron (NM_001330636, intron 3 of 6) intron (NM_001330636, intron 3 of 6) 4948 NM_001136041 79885 Hs.744132 NM_024827 ENSG00000163517 HDAC11 HD11 histone deacetylase 11 protein-coding 12993 chr17 75096161 75096315 + 0 NA intron (NM_004695, intron 3 of 6) MIR3|SINE|MIR 8297 NM_004695 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 12362 chr17 35242975 35243090 + 0 NA promoter-TSS (NM_144975) promoter-TSS (NM_144975) -4 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 3590 chr10 38010972 38011095 + 0 NA intron (NM_001324178, intron 1 of 3) CpG 383 NM_001324175 7581 Hs.435774 NM_006954 ENSG00000189180 ZNF33A KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK zinc finger protein 33A protein-coding 1060 chr1 66930280 66930336 + 0 NA promoter-TSS (NM_001077701) promoter-TSS (NM_001077701) 65 NM_001077704 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 3759 chr10 62268648 62268795 + 0 NA 5' UTR (NM_145307, exon 1 of 12) 5' UTR (NM_145307, exon 1 of 12) 142 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 29315 chr9 78031888 78032113 + 0 NA promoter-TSS (NM_002072) promoter-TSS (NM_002072) -551 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 17301 chr2 233690667 233690771 + 0 NA promoter-TSS (NM_205862) promoter-TSS (NM_205862) -956 NM_205862 54578 Hs.554822 NM_001072 ENSG00000167165 UGT1A6 GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT1|UGT1A6S|UGT1F UDP glucuronosyltransferase family 1 member A6 protein-coding 13131 chr17 81395392 81395496 + 0 NA Intergenic CpG -4277 NM_001291324 57597 Hs.514580 NM_024696 ENSG00000266074 BAHCC1 BAHD2 BAH domain and coiled-coil containing 1 protein-coding 2104 chr1 175757488 175757592 + 0 NA Intergenic Intergenic -13924 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 22443 chr5 41009436 41009529 + 0 NA intron (NM_173489, intron 31 of 41) intron (NM_173489, intron 31 of 41) 61860 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2 maestro heat like repeat family member 2B protein-coding 11721 chr16 81505091 81505230 + 0 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) 9811 NM_030629 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 10582 chr15 83067354 83067458 + 0 NA promoter-TSS (NM_025238) promoter-TSS (NM_025238) -52 NM_001011885 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 24630 chr6 46062383 46062535 + 0 NA intron (NM_001114086, intron 1 of 5) intron (NM_001114086, intron 1 of 5) 17889 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 17093 chr2 217988155 217988290 + 0 NA intron (NR_135524, intron 3 of 3) intron (NR_135524, intron 3 of 3) 9515 NR_135524 105373878 Hs.630709 NR_135524 ENSG00000223923 LOC105373878 - uncharacterized LOC105373878 ncRNA 16016 chr2 99701619 99701723 + 0 NA intron (NM_001025108, intron 10 of 23) L1MD2|LINE|L1 -211615 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 2894 chr1 228406931 228407075 + 0 NA promoter-TSS (NM_145214) promoter-TSS (NM_145214) -187 NM_145214 81559 Hs.13543 NM_145214 ENSG00000154370 TRIM11 BIA1|RNF92 tripartite motif containing 11 protein-coding 2126 chr1 178093607 178093722 + 0 NA promoter-TSS (NM_170692) promoter-TSS (NM_170692) -65 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 27797 chr8 49164588 49164650 + 0 NA Intergenic L1ME1|LINE|L1 92278 NM_001256597 492307 Hs.49890 NM_001007176 ENSG00000168333 C8orf22 - chromosome 8 open reading frame 22 protein-coding 10758 chr15 94677285 94677342 + 0 NA Intergenic Intergenic -178050 NR_077061 440311 Hs.745156 NR_077061 ENSG00000260521 LOC440311 - glioma tumor suppressor candidate region gene 2 pseudogene pseudo 4221 chr10 100481621 100481739 + 0 NA intron (NM_003393, intron 4 of 5) intron (NM_003393, intron 4 of 5) 18625 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 14217 chr19 16330595 16330761 + 0 NA Intergenic Intergenic 5852 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 8644 chr13 113305276 113305355 + 0 NA intron (NM_005561, intron 1 of 8) intron (NM_005561, intron 1 of 8) 8161 NM_005561 3916 Hs.494419 NM_005561 ENSG00000185896 LAMP1 CD107a|LAMPA|LGP120 lysosomal associated membrane protein 1 protein-coding 2526 chr1 207321485 207321570 + 0 NA promoter-TSS (NR_125349) promoter-TSS (NR_125349) 55 NM_001300904 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 972 chr1 60573841 60573956 + 0 NA Intergenic Intergenic 251686 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 25075 chr6 120147312 120147409 + 0 NA Intergenic L1PB1|LINE|L1 132181 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 7787 chr12 121888613 121888717 + 0 NA promoter-TSS (NM_001171993) promoter-TSS (NM_001171993) -54 NM_001171993 3242 Hs.2899 NM_002150 ENSG00000158104 HPD 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD 4-hydroxyphenylpyruvate dioxygenase protein-coding 24985 chr6 108261110 108261320 + 0 NA promoter-TSS (NM_001300928) promoter-TSS (NM_001300928) 45 NM_152827 8724 Hs.12102 NM_003795 ENSG00000112335 SNX3 Grd19|MCOPS8|SDP3 sorting nexin 3 protein-coding 14652 chr19 48589151 48589281 + 0 NA intron (NM_004605, intron 2 of 5) L2a|LINE|L2 13480 NM_004605 6820 Hs.369331 NM_004605 ENSG00000088002 SULT2B1 HSST2 sulfotransferase family 2B member 1 protein-coding 29880 chr9 112012341 112012420 + 0 NA Intergenic Intergenic 80280 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 29485 chr9 88388135 88388178 + 0 NA promoter-TSS (NM_006717) promoter-TSS (NM_006717) -226 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 22559 chr5 56527334 56527341 + 0 NA intron (NM_001287053, intron 4 of 5) intron (NM_001287053, intron 4 of 5) -45568 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 12101 chr17 10616666 10616672 + 0 NA intron (NR_125367, intron 10 of 10) intron (NR_125367, intron 10 of 10) 40640 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 DA2A|DA2B|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 10003 chr15 44194691 44194770 + 0 NA promoter-TSS (NM_001286490) promoter-TSS (NM_001286490) -284 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 5643 chr11 73272137 73272241 + 0 NA promoter-TSS (NM_001277204) promoter-TSS (NM_001277204) 47 NM_001277208 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 21848 chr4 142615465 142615569 + 0 NA intron (NM_003866, intron 2 of 26) MER49|LTR|ERV1 231018 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 20504 chr3 157437831 157437935 + 0 NA exon (NM_002852, exon 2 of 3) exon (NM_002852, exon 2 of 3) 1092 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 18130 chr20 47334210 47334343 + 0 NA intron (NM_001281769, intron 2 of 3) Tigger5b|DNA|TcMar-Tigger 15774 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 3420 chr10 23352056 23352181 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -7275 NM_153714 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552|bA215C7.4 chromosome 10 open reading frame 67 protein-coding 5130 chr11 34243773 34243915 + 0 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 114164 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 14108 chr19 11265804 11265941 + 0 NA Intergenic Intergenic -3380 NM_020812 57572 Hs.591002 NM_020812 ENSG00000130158 DOCK6 AOS2|ZIR1 dedicator of cytokinesis 6 protein-coding 5684 chr11 76318909 76319051 + 0 NA Intergenic Intergenic 61985 NM_004705 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 25998 chr7 32846691 32846854 + 0 NA Intergenic Intergenic 20470 NR_132360 102724668 Hs.636806 NR_132360 DPY19L1P2 THC1072510 DPY19L1 pseudogene 2 pseudo 6261 chr11 124402502 124402606 + 0 NA Intergenic Intergenic -5203 NM_001005467 390271 Hs.690456 NM_001005467 ENSG00000196661 OR8B3 OR11-311 olfactory receptor family 8 subfamily B member 3 protein-coding 6243 chr11 122697778 122697882 + 0 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 42140 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 26935 chr7 123749119 123749280 + 0 NA promoter-TSS (NM_003941) promoter-TSS (NM_003941) -128 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB Wiskott-Aldrich syndrome like protein-coding 13164 chr17 82288150 82288254 + 0 NA Intergenic Intergenic 4612 NR_135639 101929511 Hs.147682 NR_135639 ENSG00000265692 LINC01970 - long intergenic non-protein coding RNA 1970 ncRNA 26771 chr7 105014200 105014272 + 0 NA promoter-TSS (NM_182931) promoter-TSS (NM_182931) 46 NM_018682 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 31005 chrX 119468257 119468361 + 0 NA promoter-TSS (NR_134915) promoter-TSS (NR_134915) -47 NR_134915 100303728 Hs.714405 NR_028443 ENSG00000224281 SLC25A5-AS1 - SLC25A5 antisense RNA 1 ncRNA 16100 chr2 108933935 108934007 + 0 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 55401 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 13975 chr19 5298489 5298659 + 0 NA intron (NM_130855, intron 1 of 29) intron (NM_130855, intron 1 of 29) 42229 NM_002850 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase, receptor type S protein-coding 13532 chr18 48538897 48539050 + 0 NA promoter-TSS (NM_001142397) promoter-TSS (NM_001142397) -83 NM_014772 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 8349 chr13 73429887 73429928 + 0 NA Intergenic Intergenic -134337 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 4869 chr11 13277435 13277541 + 0 NA promoter-TSS (NM_001297719) promoter-TSS (NM_001297719) -239 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 2812 chr1 224434730 224434876 + 0 NA promoter-TSS (NM_001322302) promoter-TSS (NM_001322302) -92 NM_001322302 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 560 chr1 32760192 32760296 + 0 NA intron (NM_020888, intron 1 of 6) intron (NM_020888, intron 1 of 6) -5390 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 13284 chr18 12884038 12884039 + 0 NA intron (NM_080423, intron 1 of 8) CpG 297 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase, non-receptor type 2 protein-coding 27426 chr8 13365240 13365344 + 0 NA intron (NM_024767, intron 4 of 4) intron (NM_024767, intron 4 of 4) -88744 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 2830 chr1 225653039 225653192 + 0 NA promoter-TSS (NM_001008493) promoter-TSS (NM_001008493) 28 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 3670 chr10 50327015 50327119 + 0 NA intron (NM_147156, intron 8 of 10) intron (NM_147156, intron 8 of 10) -78457 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 7391 chr12 89353949 89353981 + 0 NA Intergenic CpG-5829 -1106 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 29701 chr9 100352855 100353036 + 0 NA promoter-TSS (NM_001161584) promoter-TSS (NM_001161584) 32 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 26187 chr7 45034043 45034168 + 0 NA intron (NM_001029835, intron 1 of 9) intron (NM_001029835, intron 1 of 9) 6471 NM_001029835 83605 Hs.148272 NM_031443 ENSG00000136280 CCM2 C7orf22|OSM|PP10187 CCM2 scaffolding protein protein-coding 25195 chr6 136716440 136716540 + 0 NA intron (NM_005923, intron 2 of 29) intron (NM_005923, intron 2 of 29) -67557 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 7239 chr12 67593188 67593302 + 0 NA Intergenic Intergenic -55487 NM_006482 8445 Hs.173135 NM_003583 ENSG00000127334 DYRK2 - dual specificity tyrosine phosphorylation regulated kinase 2 protein-coding 20027 chr3 122384057 122384255 + 0 NA promoter-TSS (NM_001017928) promoter-TSS (NM_001017928) -20 NM_014367 26355 Hs.584881 NM_014367 ENSG00000114023 FAM162A C3orf28|E2IG5|HGTD-P family with sequence similarity 162 member A protein-coding 15683 chr2 65388257 65388430 + 0 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -21546 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 7573 chr12 105236192 105236272 + 0 NA promoter-TSS (NM_001251904) promoter-TSS (NM_001251904) -2 NM_001251904 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 25606 chr7 5592711 5592846 + 0 NA promoter-TSS (NM_003088) promoter-TSS (NM_003088) -27 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 17344 chr2 237432801 237432905 + 0 NA Intergenic Intergenic -18646 NM_057166 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 17164 chr2 223263120 223263231 + 0 NA Intergenic L2a|LINE|L2 211245 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 2448 chr1 204080438 204080542 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 7372 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 2969 chr1 233520661 233520790 + 0 NA Intergenic MLT2B3|LTR|ERVL -93279 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 21985 chr4 165873730 165873752 + 0 NA 5' UTR (NM_001204760, exon 1 of 10) 5' UTR (NM_001204760, exon 1 of 10) 483 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 20491 chr3 157081721 157081854 + 0 NA promoter-TSS (NR_135546) promoter-TSS (NR_135546) -54 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 17977 chr20 38144340 38144350 + 0 NA intron (NM_198951, intron 6 of 9) intron (NM_198951, intron 6 of 9) 21084 NM_004613 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 7898 chr12 131877357 131877461 + 0 NA Intergenic HERV17-int|LTR|ERV1 -17325 NM_003565 8408 Hs.47061 NM_003565 ENSG00000177169 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 17055 chr2 213289105 213289221 + 0 NA intron (NR_047659, intron 2 of 17) MER5A1|DNA|hAT-Charlie 4784 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 2721 chr1 219385997 219386082 + 0 NA Intergenic Intergenic 171285 NR_135822 102723886 Hs.525963 NR_135822 LOC102723886 - uncharacterized LOC102723886 ncRNA 20949 chr3 190486323 190486475 + 0 NA Intergenic Intergenic -27652 NM_001167928 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 23628 chr5 159583358 159583462 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -117134 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 4788 chr11 9139131 9139235 + 0 NA 3' UTR (NM_001243254, exon 23 of 23) 3' UTR (NM_001243254, exon 23 of 23) 44820 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 14399 chr19 37078236 37078372 + 0 NA promoter-TSS (NM_001329519) promoter-TSS (NM_001329519) 82 NM_001329517 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 11034 chr16 12899671 12899780 + 0 NA Intergenic MIR|SINE|MIR -1895 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 8810 chr14 32203462 32203586 + 0 NA promoter-TSS (NR_104084).4 promoter-TSS (NR_104084).4 -255 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 26756 chr7 103446087 103446191 + 0 NA promoter-TSS (NM_001321787) promoter-TSS (NM_001321787) 38 NR_135802 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 4909 chr11 15819820 15819924 + 0 NA Intergenic MamGypLTR3|LTR|Gypsy 149749 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 4384 chr10 113679791 113679895 + 0 NA exon (NM_001267057, exon 1 of 7) exon (NM_001267057, exon 1 of 7) 174 NM_033338 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 27615 chr8 28401150 28401310 + 0 NA Intergenic Intergenic -14770 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 16810 chr2 189674552 189674656 + 0 NA Intergenic CpG -1381 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 27661 chr8 32548921 32548970 + 0 NA intron (NM_013964, intron 1 of 11) CpG 735 NM_001160002 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 15885 chr2 84905489 84905671 + 0 NA promoter-TSS (NM_021103) promoter-TSS (NM_021103) -59 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 20007 chr3 120559786 120559890 + 0 NA Intergenic Intergenic -36443 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 5148 chr11 34916552 34916692 + 0 NA promoter-TSS (NM_015957) promoter-TSS (NM_015957) -211 NM_015957 51074 Hs.447794 NM_015957 ENSG00000149089 APIP APIP2|CGI-29|CGI29|MMRP19|hAPIP APAF1 interacting protein protein-coding 20088 chr3 126858951 126859130 + 0 NA intron (NM_032343, intron 5 of 7) L2b|LINE|L2 -129554 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 9932 chr15 40694994 40695113 + 0 NA promoter-TSS (NR_040058) promoter-TSS (NR_040058) 52 NR_040058 100505648 Hs.586876 NR_040058 ENSG00000245849 RAD51-AS1 TODRA RAD51 antisense RNA 1 (head to head) ncRNA 15114 chr2 18299571 18299732 + 0 NA Intergenic Intergenic 261042 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding 27113 chr7 140242621 140242721 + 0 NA Intergenic Intergenic 65410 NR_024451 100134229 Hs.634333 NR_024451 ENSG00000260231 JHDM1D-AS1 - JHDM1D antisense RNA 1 (head to head) ncRNA 3065 chr1 240783686 240783790 + 0 NA intron (NM_001282778, intron 16 of 16) intron (NM_001282778, intron 16 of 16) -171576 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 19376 chr3 39107620 39107787 + 0 NA promoter-TSS (NM_001105513) promoter-TSS (NM_001105513) 42 NM_145755 199223 Hs.443935 NM_145755 ENSG00000168026 TTC21A IFT139A|STI2 tetratricopeptide repeat domain 21A protein-coding 2406 chr1 202222457 202222595 + 0 NA intron (NM_001017404, intron 1 of 15) intron (NM_001017404, intron 1 of 15) 8371 NM_001017404 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 76 chr1 6220320 6220482 + 0 NA TTS (NM_012405) TTS (NM_012405) 14272 NM_207396 388591 Hs.716549 NM_173795 ENSG00000158286 RNF207 C1orf188 ring finger protein 207 protein-coding 7621 chr12 108838461 108838651 + 0 NA intron (NM_001161330, intron 2 of 13) intron (NM_001161330, intron 2 of 13) -1550 NR_030350 693204 NR_030350 ENSG00000207622 MIR619 MIRN619|hsa-mir-619 microRNA 619 ncRNA 14750 chr19 51986809 51986956 + 0 NA promoter-TSS (NM_021632) promoter-TSS (NM_021632) -56 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 982 chr1 61338090 61338177 + 0 NA intron (NM_005595, intron 4 of 9) intron (NM_005595, intron 4 of 9) -84615 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 28544 chr8 121942649 121942753 + 0 NA Intergenic Intergenic -301311 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 30716 chrX 49191303 49191446 + 0 NA intron (NM_003179, intron 6 of 6) intron (NM_003179, intron 6 of 6) -4974 NM_006150 4007 Hs.732712 NM_006150 ENSG00000012211 PRICKLE3 LMO6 prickle planar cell polarity protein 3 protein-coding 20179 chr3 133573298 133573464 + 0 NA promoter-TSS (NM_001134422) promoter-TSS (NM_001134422) -209 NM_001134422 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 11898 chr17 1628925 1628925 + 0 NA promoter-TSS (NM_001284498) promoter-TSS (NM_001284498) -39 NM_001321364 124935 Hs.160550 NM_152346 ENSG00000167703 SLC43A2 LAT4 solute carrier family 43 member 2 protein-coding 10743 chr15 93460889 93460942 + 0 NA Intergenic Intergenic -371701 NM_020211 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 22494 chr5 50667901 50668055 + 0 NA intron (NM_001331028, intron 1 of 25) intron (NM_001331028, intron 1 of 25) 432 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 8151 chr13 40504190 40504278 + 0 NA Intergenic Intergenic -23228 NR_024506 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 - long intergenic non-protein coding RNA 598 ncRNA 1345 chr1 94713859 94713960 + 0 NA intron (NR_104131, intron 2 of 4) intron (NR_104131, intron 2 of 4) 31991 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 22122 chr4 186845208 186845312 + 0 NA Intergenic Intergenic -121427 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 26607 chr7 93558815 93558919 + 0 NA intron (NM_001164737, intron 2 of 15) MER5A|DNA|hAT-Charlie 943 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 4431 chr10 117165897 117166001 + 0 NA intron (NR_121650, intron 1 of 1) CpG 1825 NR_037436 100500893 NR_037436 ENSG00000266782 MIR3663 - microRNA 3663 ncRNA 27222 chr7 150944795 150944928 + 0 NA TTS (NM_000238) TTS (NM_000238) 10968 NM_001204798 3757 Hs.647099 NM_000238 ENSG00000055118 KCNH2 ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1 potassium voltage-gated channel subfamily H member 2 protein-coding 30563 chrX 23246086 23246190 + 0 NA intron (NR_073010, intron 2 of 11) MER4-int|LTR|ERV1 47008 NR_073010 100873065 Hs.628459 NR_046436 PTCHD1-AS DDX53-AS1|PTCHD1AS1|PTCHD1AS2 PTCHD1 antisense RNA (head to head) ncRNA 22255 chr5 14664512 14664608 + 0 NA promoter-TSS (NM_138348) promoter-TSS (NM_138348) -85 NM_138348 90268 Hs.406335 NM_138348 ENSG00000154124 OTULIN AIPDS|FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 23767 chr5 175517947 175518051 + 0 NA intron (NM_001322982, intron 8 of 10) intron (NM_001322982, intron 8 of 10) 39501 NM_001322978 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 TCC sideroflexin 1 protein-coding 23029 chr5 112921174 112921230 + 0 NA exon (NM_005669, exon 2 of 5) exon (NM_005669, exon 2 of 5) 1132 NM_005669 7905 Hs.429608 NM_005669 ENSG00000129625 REEP5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e receptor accessory protein 5 protein-coding 758 chr1 43349448 43349567 + 0 NA intron (NM_005373, intron 10 of 11) CpG-1006 -9448 NM_001255 991 Hs.524947 NM_001255 ENSG00000117399 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding 15215 chr2 26805350 26805454 + 0 NA Intergenic Intergenic 19387 NM_001042426 1058 Hs.1594 NM_001809 ENSG00000115163 CENPA CENP-A|CenH3 centromere protein A protein-coding 14 chr1 1162747 1162903 + 0 NA Intergenic CpG -4279 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B|mir-200b microRNA 200b ncRNA 22789 chr5 80493558 80493662 + 0 NA intron (NM_205548, intron 1 of 5) MER11A|LTR|ERVK 5629 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 2587 chr1 210239358 210239510 + 0 NA intron (NM_019605, intron 2 of 3) intron (NM_019605, intron 2 of 3) -5313 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 29800 chr9 108473323 108473427 + 0 NA Intergenic Intergenic 382620 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 14671 chr19 48993390 48993545 + 0 NA promoter-TSS (NM_002103) promoter-TSS (NM_002103) 19 NR_135578 10856 Hs.515846 NM_006666 ENSG00000183207 RUVBL2 CGI-46|ECP-51|ECP51|INO80J|REPTIN|RVB2|TAP54-beta|TIH2|TIP48|TIP49B RuvB like AAA ATPase 2 protein-coding 10898 chr16 2835899 2835944 + 0 NA Intergenic Intergenic 5749 NM_145252 124220 Hs.105887 NM_145252 ENSG00000162078 ZG16B EECP|HRPE773|JCLN2|PAUF|PRO1567 zymogen granule protein 16B protein-coding 9010 chr14 52700793 52700823 + 0 NA Intergenic Intergenic -4877 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 22340 chr5 32444684 32444788 + 0 NA promoter-TSS (NM_016107) promoter-TSS (NM_016107) 25 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 9556 chr14 91127586 91127741 + 0 NA intron (NM_001286471, intron 1 of 13) intron (NM_001286471, intron 1 of 13) 1237 NR_003709 100124539 Hs.693444 NR_003709 ENSG00000221102 SNORA11B - small nucleolar RNA, H/ACA box 11B snoRNA 25946 chr7 28686001 28686124 + 0 NA promoter-TSS (NM_001011666) promoter-TSS (NM_001011666) 81 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 2328 chr1 199247944 199248042 + 0 NA Intergenic L3|LINE|CR1 -229029 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 17076 chr2 216013345 216013350 + 0 NA 5' UTR (NM_018000, exon 1 of 5) 5' UTR (NM_018000, exon 1 of 5) 276 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 3786 chr10 63976664 63976736 + 0 NA Intergenic Intergenic -454625 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 234 chr1 16613508 16613643 + 0 NA promoter-TSS (NM_017940) promoter-TSS (NM_017940) 30 NM_017940 55672 Hs.467587 NM_017940 ENSG00000219481 NBPF1 AB13|AB14|AB23|AD2|NBG|NBPF neuroblastoma breakpoint family member 1 protein-coding 7867 chr12 125533635 125533739 + 0 NA intron (NM_052907, intron 4 of 8) CpG -88765 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 18669 chr22 21652071 21652225 + 0 NA promoter-TSS (NR_030622) promoter-TSS (NR_030622) -833 NR_030622 100126318 NR_030622 ENSG00000212102 MIR301B MIRN301B|mir-301b microRNA 301b ncRNA 4580 chr10 125896450 125896616 + 0 NA promoter-TSS (NM_145235) promoter-TSS (NM_145235) -6 NM_145235 92565 Hs.352591 NM_145235 ENSG00000203780 FANK1 HSD13 fibronectin type III and ankyrin repeat domains 1 protein-coding 27200 chr7 149090875 149090979 + 0 NA promoter-TSS (NM_152411) promoter-TSS (NM_152411) -150 NM_152411 136051 Hs.729572 NM_152411 ENSG00000197362 ZNF786 - zinc finger protein 786 protein-coding 19836 chr3 108589545 108589666 + 0 NA promoter-TSS (NM_020890) promoter-TSS (NM_020890) 39 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 KIAA1524 CIP2A|p90 KIAA1524 protein-coding 10011 chr15 44663615 44663768 + 0 NA promoter-TSS (NM_025137) promoter-TSS (NM_025137) -13 NM_025137 80208 Hs.656271 NM_025137 ENSG00000104133 SPG11 ALS5|CMT2X|KIAA1840 spastic paraplegia 11 (autosomal recessive) protein-coding 12040 chr17 7404076 7404228 + 0 NA promoter-TSS (NR_037719) promoter-TSS (NR_037719) -21 NM_152766 254863 Hs.730789 NM_152766 ENSG00000205544 TMEM256 C17orf61 transmembrane protein 256 protein-coding 5213 chr11 44978987 44979106 + 0 NA Intergenic L2c|LINE|L2 5144 NR_026681 221122 Hs.551656 NR_026681 ENSG00000254654 LOC221122 - uncharacterized LOC221122 ncRNA 10273 chr15 64381443 64381596 + 0 NA promoter-TSS (NM_014736) promoter-TSS (NM_014736) -9 NM_014736 9768 Hs.81892 NM_014736 ENSG00000166803 PCLAF KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF PCNA clamp associated factor protein-coding 3554 chr10 33238140 33238244 + 0 NA intron (NM_001024628, intron 6 of 11) intron (NM_001024628, intron 6 of 11) 96713 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 30878 chrX 100895808 100896015 + 0 NA Intergenic Intergenic -21566 NM_013955 27035 Hs.592227 NM_007052 ENSG00000007952 NOX1 GP91-2|MOX1|NOH-1|NOH1 NADPH oxidase 1 protein-coding 16470 chr2 151973922 151973991 + 0 NA 5' UTR (NM_001320722, exon 1 of 14) 5' UTR (NM_001320722, exon 1 of 14) 130 NM_001330115 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 6158 chr11 118359523 118359641 + 0 NA promoter-TSS (NM_001204077) promoter-TSS (NM_001204077) 1 NM_004788 9354 Hs.75275 NM_004788 ENSG00000110344 UBE4A E4|UBOX2|UFD2 ubiquitination factor E4A protein-coding 25575 chr7 3762032 3762086 + 0 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -367626 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 10127 chr15 52679382 52679511 + 0 NA promoter-TSS (NR_104457) promoter-TSS (NR_104457) -812 NM_019600 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 11973 chr17 4833330 4833352 + 0 NA promoter-TSS (NM_001024937) promoter-TSS (NM_001024937) 1 NM_153827 50488 Hs.443417 NM_015716 ENSG00000141503 MINK1 B55|MAP4K6|MINK|YSK2|ZC3 misshapen like kinase 1 protein-coding 6936 chr12 47705884 47705988 + 0 NA intron (NM_024604, intron 1 of 16) CpG 125 NM_001146075 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 - RNA polymerase II associated protein 3 protein-coding 12978 chr17 74748510 74748614 + 0 NA promoter-TSS (NM_004252) promoter-TSS (NM_004252) -50 NM_004252 9368 Hs.724482 NM_004252 ENSG00000109062 SLC9A3R1 EBP50|NHERF|NHERF-1|NHERF1|NPHLOP2 SLC9A3 regulator 1 protein-coding 9191 chr14 63864433 63864523 + 0 NA intron (NM_182914, intron 1 of 115) intron (NM_182914, intron 1 of 115) 11513 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 6107 chr11 113690757 113690906 + 0 NA intron (NR_110047, intron 8 of 9) intron (NR_110047, intron 8 of 9) 15542 NR_110047 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane protease, serine 5 protein-coding 24299 chr6 29650045 29650225 + 0 NA Intergenic CpG -6846 NM_001008228 4340 Hs.141308 NM_002433 ENSG00000204655 MOG BTN6|BTNL11|MOGIG2|NRCLP7 myelin oligodendrocyte glycoprotein protein-coding 22709 chr5 73216203 73216355 + 0 NA Intergenic CpG -14318 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 28719 chr8 133182539 133182643 + 0 NA Intergenic MIRb|SINE|MIR -8448 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 20826 chr3 184645340 184645529 + 0 NA Intergenic L2c|LINE|L2 66614 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 - MAGE family member F1 protein-coding 18943 chr22 40857077 40857196 + 0 NA promoter-TSS (NM_001278589) promoter-TSS (NM_001278589) 55 NM_022098 63929 Hs.529163 NM_022098 ENSG00000196236 XPNPEP3 APP3|ICP55|NPHPL1 X-prolyl aminopeptidase 3 protein-coding 1000 chr1 62784055 62784088 + 0 NA promoter-TSS (NM_032852) promoter-TSS (NM_032852) -35 NM_178221 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 26624 chr7 94697464 94697568 + 0 NA Intergenic Intergenic 41191 NM_001184962 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3 paternally expressed 10 protein-coding 11222 chr16 30490321 30490471 + 0 NA intron (NM_002209, intron 11 of 30) MER74B|LTR|ERVL -13523 NR_039743 100616405 NR_039743 ENSG00000266305 MIR4518 mir-4518 microRNA 4518 ncRNA 9818 chr15 31215672 31215715 + 0 NA promoter-TSS (NR_135834).2 promoter-TSS (NR_135834).2 -328 NR_135834 102725022 Hs.664541 NR_135834 LOC102725022 - uncharacterized LOC102725022 ncRNA 8410 chr13 79451659 79451763 + 0 NA Intergenic Intergenic -29413 NM_001161407 54602 Hs.525093 NM_019080 ENSG00000102471 NDFIP2 N4WBP5A Nedd4 family interacting protein 2 protein-coding 27181 chr7 147570558 147570702 + 0 NA intron (NM_014141, intron 12 of 23) MIR|SINE|MIR -101049 NR_133930 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 6669 chr12 14777415 14777519 + 0 NA non-coding (NR_027716, exon 2 of 2) non-coding (NR_027716, exon 2 of 2) 3131 NR_027716 55766 Hs.524280 NM_018267 ENSG00000246705 H2AFJ H2AJ H2A histone family member J protein-coding 3502 chr10 29784473 29784655 + 0 NA Intergenic Intergenic -47563 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 30890 chrX 102599388 102599526 + 0 NA promoter-TSS (NM_001168478) promoter-TSS (NM_001168478) -41 NM_001168482 64860 Hs.522729 NM_022838 ENSG00000125962 ARMCX5 GASP5 armadillo repeat containing, X-linked 5 protein-coding 3955 chr10 78029474 78029482 + 0 NA promoter-TSS (NM_007055) promoter-TSS (NM_007055) 62 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|hRPC155 RNA polymerase III subunit A protein-coding 5367 chr11 62553527 62553653 + 0 NA Intergenic Intergenic 6716 NR_037427 100500804 NR_037427 MIR3654 - microRNA 3654 ncRNA 17340 chr2 237085727 237085864 + 0 NA 5' UTR (NM_006710, exon 1 of 8) 5' UTR (NM_006710, exon 1 of 8) 354 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 193 chr1 13801228 13801349 + 0 NA intron (NM_012231, intron 8 of 9) intron (NM_012231, intron 8 of 9) 51907 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 22974 chr5 106415702 106415806 + 0 NA Intergenic Intergenic 595260 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 119 chr1 8817669 8817773 + 0 NA promoter-TSS (NM_001042681) promoter-TSS (NM_001042681) -81 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 12956 chr17 72725571 72725672 + 0 NA intron (NM_139177, intron 7 of 9) intron (NM_139177, intron 7 of 9) -85149 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 18796 chr22 30969179 30969266 + 0 NA promoter-TSS (NM_001303256) promoter-TSS (NM_001303256) 11 NR_110492 55000 Hs.554829 NR_002323 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 (non-protein coding) ncRNA 16689 chr2 174771663 174771767 + 0 NA Intergenic Intergenic -7243 NM_000079 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 10222 chr15 60398601 60398744 + 0 NA promoter-TSS (NM_001002857) promoter-TSS (NM_001002857) -686 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 7859 chr12 124940815 124940837 + 0 NA Intergenic L2a|LINE|L2 25279 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 15629 chr2 61694644 61694793 + 0 NA Intergenic CpG -156435 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM1|emb|exp1 exportin 1 protein-coding 30456 chrX 4710707 4710813 + 0 NA Intergenic MER61E|LTR|ERV1 -77188 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 30030 chr9 121133237 121133371 + 0 NA intron (NM_001330762, intron 3 of 32) L1PA6|LINE|L1 11534 NM_001330762 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 7946 chr13 20943630 20943784 + 0 NA intron (NR_104058, intron 2 of 5) intron (NR_104058, intron 2 of 5) 5721 NR_104058 101930748 Hs.637638 NR_104058 ENSG00000233780 LINC00367 - long intergenic non-protein coding RNA 367 ncRNA 4438 chr10 117461931 117462036 + 0 NA Intergenic Intergenic -80462 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 29887 chr9 112147153 112147257 + 0 NA intron (NM_022486, intron 3 of 16) intron (NM_022486, intron 3 of 16) 28092 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 25639 chr7 6589973 6589988 + 0 NA promoter-TSS (NM_001303039) promoter-TSS (NM_001303039) -41 NM_001303039 79034 Hs.487511 NM_024067 ENSG00000146576 C7orf26 - chromosome 7 open reading frame 26 protein-coding 29534 chr9 91693325 91693422 + 0 NA Intergenic L2|LINE|L2 -57028 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 8904 chr14 37567142 37567258 + 0 NA Intergenic Intergenic 27920 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 30337 chr9 134407383 134407527 + 0 NA 5' UTR (NM_001291921, exon 1 of 9) 5' UTR (NM_001291921, exon 1 of 9) 873 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 4196 chr10 99659270 99659399 + 0 NA promoter-TSS (NM_020354) promoter-TSS (NM_020354) -172 NM_020354 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 21131 chr4 3461572 3461725 + 0 NA Intergenic Intergenic -1658 NM_001301071 285489 Hs.122110 NM_173660 ENSG00000175920 DOK7 C4orf25|CMS10|CMS1B docking protein 7 protein-coding 2597 chr1 210597893 210598037 + 0 NA intron (NM_001122834, intron 10 of 11) L1MA3|LINE|L1 268669 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 14311 chr19 21141947 21142043 + 0 NA promoter-TSS (NM_001319124) promoter-TSS (NM_001319124) -15 NM_001319124 170959 Hs.156256 NM_133473 ENSG00000196705 ZNF431 - zinc finger protein 431 protein-coding 8370 chr13 75760599 75760704 + 0 NA promoter-TSS (NM_015842) promoter-TSS (NM_015842) -10 NM_015842 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 5441 chr11 64448953 64449045 + 0 NA promoter-TSS (NR_073177) promoter-TSS (NR_073177) -58 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LOC100996455 - uncharacterized LOC100996455 ncRNA 30775 chrX 65534762 65534892 + 0 NA promoter-TSS (NM_001170649) promoter-TSS (NM_001170649) -21 NM_031206 81887 Hs.522675 NM_031206 ENSG00000001497 LAS1L Las1-like|WTS|dJ475B7.2 LAS1 like, ribosome biogenesis factor protein-coding 17907 chr20 34661908 34661997 + 0 NA intron (NM_080476, intron 1 of 11) L1PA15|LINE|L1 15333 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 16198 chr2 118387838 118387919 + 0 NA Intergenic MIRb|SINE|MIR -201492 NR_144530 100506797 Hs.116176 NR_144530 LOC100506797 - uncharacterized LOC100506797 ncRNA 10966 chr16 4925080 4925184 + 0 NA intron (NM_002705, intron 1 of 21) intron (NM_002705, intron 1 of 21) 12003 NM_002705 5493 Hs.192233 NM_002705 ENSG00000118898 PPL - periplakin protein-coding 1871 chr1 157852730 157852732 + 0 NA Intergenic Intergenic -10887 NM_001347698 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 31022 chrX 120485837 120485888 + 0 NA Intergenic Intergenic -16513 NM_013995 3920 Hs.496684 NM_002294 ENSG00000005893 LAMP2 CD107b|LAMP-2|LAMPB|LGP110 lysosomal associated membrane protein 2 protein-coding 19726 chr3 98483219 98483287 + 0 NA Intergenic L1PA7|LINE|L1 13773 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 12643 chr17 49556424 49556528 + 0 NA intron (NR_103773, intron 1 of 2) CpG 17588 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 2795 chr1 223726623 223726727 + 0 NA intron (NM_001146068, intron 2 of 20) intron (NM_001146068, intron 2 of 20) 14258 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 8517 chr13 101876178 101876209 + 0 NA intron (NM_001321937, intron 1 of 3) intron (NM_001321937, intron 1 of 3) 40452 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 18138 chr20 47576724 47576869 + 0 NA intron (NM_006534, intron 1 of 22) intron (NM_006534, intron 1 of 22) 74939 NM_001174088 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 19883 chr3 112086247 112086380 + 0 NA promoter-TSS (NM_024616) promoter-TSS (NM_024616) -22 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 3912 chr10 74151045 74151194 + 0 NA promoter-TSS (NM_001320264) promoter-TSS (NM_001320264) -34 NM_207012 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 mu 1 subunit protein-coding 10908 chr16 2905458 2905569 + 0 NA Intergenic CpG -6466 NM_032296 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 30347 chr9 135961393 135961561 + 0 NA promoter-TSS (NM_016172) promoter-TSS (NM_016172) -97 NM_016172 10422 Hs.9194 NM_016172 ENSG00000130560 UBAC1 GBDR1|KPC2|UBADC1 UBA domain containing 1 protein-coding 25307 chr6 149233409 149233429 + 0 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) 15495 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 6637 chr12 13000393 13000497 + 0 NA promoter-TSS (NM_015987) promoter-TSS (NM_015987) 3 NR_002774 93164 Hs.593282 NR_002774 ENSG00000183935 HTR7P1 HTR7P 5-hydroxytryptamine receptor 7 pseudogene 1 pseudo 7601 chr12 107295837 107295978 + 0 NA Intergenic Intergenic -22513 NM_001018072 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 20865 chr3 186452639 186452743 + 0 NA Intergenic Intergenic 40970 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 20733 chr3 179071738 179071885 + 0 NA promoter-TSS (NM_022470) promoter-TSS (NM_022470) 57 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 19386 chr3 39406613 39406701 + 0 NA promoter-TSS (NM_002295) promoter-TSS (NM_002295) -32 NM_002295 3921 Hs.449909 NM_002295 ENSG00000168028 RPSA 37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40 ribosomal protein SA protein-coding 14424 chr19 38657981 38658085 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 10417 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 9747 chr14 104973270 104973459 + 0 NA intron (NM_138420, intron 1 of 6) intron (NM_138420, intron 1 of 6) 4993 NM_138420 113146 Hs.441783 NM_138420 ENSG00000185567 AHNAK2 C14orf78 AHNAK nucleoprotein 2 protein-coding 1844 chr1 156130298 156130402 + 0 NA intron (NM_001282624, intron 2 of 10) intron (NM_001282624, intron 2 of 10) 4233 NM_001257374 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 11324 chr16 50152896 50152980 + 0 NA promoter-TSS (NM_001040284) promoter-TSS (NM_001040284) 20 NM_001040285 64282 Hs.514342 NM_022447 ENSG00000121274 PAPD5 TRF4-2 poly(A) RNA polymerase D5, non-canonical protein-coding 18194 chr20 50730994 50731027 + 0 NA promoter-TSS (NM_032521) promoter-TSS (NM_032521) -534 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 5765 chr11 85170281 85170448 + 0 NA intron (NM_001142699, intron 4 of 27) MER39|LTR|ERV1 -246943 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 14673 chr19 49056240 49056367 + 0 NA promoter-TSS (NM_033142) promoter-TSS (NM_033142) -563 NM_033142 94027 Hs.681647 NM_033142 ENSG00000196337 CGB7 CG-beta-a|CGB6 chorionic gonadotropin beta subunit 7 protein-coding 7186 chr12 59047166 59047270 + 0 NA Intergenic Intergenic -126680 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 10108 chr15 52071666 52071835 + 0 NA Intergenic Intergenic 41025 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 13839 chr19 752763 752883 + 0 NA intron (NR_135168, intron 1 of 3) intron (NR_135168, intron 1 of 3) 1710 NR_135168 126353 Hs.439180 NM_173481 ENSG00000099812 MISP C19orf21|MISP1 mitotic spindle positioning protein-coding 16150 chr2 112584786 112584792 + 0 NA promoter-TSS (NM_001304354) promoter-TSS (NM_001304354) -83 NM_001304354 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|MIC14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 10346 chr15 68257140 68257244 + 0 NA Intergenic CpG -20611 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 30426 chrUn_KI270442v1 391755 391859 + 0 NA NA (CA)n|Simple_repeat|Simple_repeat NA NA 15936 chr2 88055755 88055909 + 0 NA promoter-TSS (NM_001304526) promoter-TSS (NM_001304526) -31 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 14705 chr19 49818259 49818363 + 0 NA promoter-TSS (NM_030973) promoter-TSS (NM_030973) 32 NM_030973 81857 Hs.656639 NM_030973 ENSG00000104973 MED25 ACID1|ARC92|BVSYS|CMT2B2|P78|PTOV2|TCBAP0758 mediator complex subunit 25 protein-coding 25932 chr7 27662969 27663123 + 0 NA promoter-TSS (NM_152740) promoter-TSS (NM_152740) -45 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 18178 chr20 50166149 50166318 + 0 NA Intergenic Intergenic -6337 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 17651 chr20 14220214 14220215 + 0 NA intron (NM_080676, intron 3 of 16) L1PBa1|LINE|L1 117453 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 24975 chr6 106908628 106908823 + 0 NA Intergenic Intergenic 65314 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 29286 chr9 76321377 76321481 + 0 NA exon (NM_001190482, exon 30 of 37) exon (NM_001190482, exon 30 of 37) 73099 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 28580 chr8 124539016 124539126 + 0 NA promoter-TSS (NM_001311168) promoter-TSS (NM_001311168) 17 NM_001146160 83940 Hs.170568 NM_032026 ENSG00000147687 TATDN1 CDA11 TatD DNase domain containing 1 protein-coding 18351 chr20 59831218 59831278 + 0 NA intron (NM_183244, intron 8 of 12) intron (NM_183244, intron 8 of 12) 102415 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 24132 chr6 18043326 18043430 + 0 NA Intergenic Intergenic -55755 NM_001243423 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 16613 chr2 168247566 168247702 + 0 NA promoter-TSS (NM_013233) promoter-TSS (NM_013233) -39 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 22276 chr5 16856710 16856814 + 0 NA intron (NM_012334, intron 2 of 40) MER96|DNA|hAT-Tip100 79514 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 8071 chr13 31199882 31200029 + 0 NA promoter-TSS (NM_194318) promoter-TSS (NM_194318) -20 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 7965 chr13 23621349 23621453 + 0 NA intron (NM_001204459, intron 2 of 7) intron (NM_001204459, intron 2 of 7) 42041 NM_001204458 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 30629 chrX 41084564 41084643 + 0 NA Intergenic CpG -1032 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9, X-linked protein-coding 18373 chr20 61442253 61442357 + 0 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -57116 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 16619 chr2 168890416 168890526 + 0 NA promoter-TSS (NM_020675) promoter-TSS (NM_020675) -37 NM_020675 57405 Hs.421956 NM_020675 ENSG00000152253 SPC25 AD024|SPBC25|hSpc25 SPC25, NDC80 kinetochore complex component protein-coding 16485 chr2 155895142 155895246 + 0 NA Intergenic Intergenic 359737 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 26522 chr7 84674594 84674681 + 0 NA Intergenic MER90|LTR|ERV1 142161 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 24740 chr6 56844321 56844331 + 0 NA promoter-TSS (NM_183380) promoter-TSS (NM_183380) 340 NR_125866 101930010 Hs.650232 NR_125866 LOC101930010 - uncharacterized LOC101930010 ncRNA 28429 chr8 109737758 109737862 + 0 NA Intergenic L2a|LINE|L2 -46019 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 28233 chr8 95190769 95190873 + 0 NA Intergenic Intergenic 25553 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 11420 chr16 57300622 57300726 + 0 NA Intergenic Intergenic -16002 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 7593 chr12 106987035 106987204 + 0 NA promoter-TSS (NM_025198) promoter-TSS (NM_025198) 47 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 25413 chr6 158168261 158168386 + 0 NA promoter-TSS (NM_032861) promoter-TSS (NM_032861) -24 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 14834 chr19 56595164 56595315 + 0 NA promoter-TSS (NM_021216) promoter-TSS (NM_021216) -57 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 30241 chr9 129752976 129753080 + 0 NA promoter-TSS (NM_004878) promoter-TSS (NM_004878) 37 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 8990 chr14 51395621 51395643 + 0 NA Intergenic Intergenic 62239 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 13292 chr18 21330565 21330669 + 0 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 88375 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772 growth regulation by estrogen in breast cancer 1 like protein-coding 10847 chr16 807809 807956 + 0 NA intron (NM_001013638, intron 2 of 2) CpG-8900 2439 NM_001013638 388199 Hs.528461 NM_001013638 ENSG00000167945 PRR25 gs64 proline rich 25 protein-coding 27900 chr8 58953551 58953697 + 0 NA intron (NM_014729, intron 2 of 8) intron (NM_014729, intron 2 of 8) 165584 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 23307 chr5 138492105 138492234 + 0 NA Intergenic CpG 26677 NM_001964 1958 Hs.326035 NM_001964 ENSG00000120738 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 5730 chr11 80594071 80594208 + 0 NA Intergenic Intergenic 168664 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 2681 chr1 215273956 215274060 + 0 NA Intergenic Intergenic 190791 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 30569 chrX 23743282 23743472 + 0 NA promoter-TSS (NM_001033583) promoter-TSS (NM_001033583) -87 NM_001033583 23597 Hs.298885 NM_001033583 ENSG00000123130 ACOT9 ACATE2|CGI-16|MT-ACT48|MTACT48 acyl-CoA thioesterase 9 protein-coding 1260 chr1 88612827 88612975 + 0 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -71243 NM_001320709 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 13830 chr19 290151 290281 + 0 NA intron (NM_177526, intron 1 of 5) intron (NM_177526, intron 1 of 5) 953 NM_177543 8612 Hs.465506 NM_003712 ENSG00000141934 PLPP2 LPP2|PAP-2c|PAP2-g|PPAP2C phospholipid phosphatase 2 protein-coding 27638 chr8 29675687 29675791 + 0 NA Intergenic Intergenic 72370 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 14257 chr19 18192910 18192927 + 0 NA promoter-TSS (NM_032683) promoter-TSS (NM_032683) -312 NM_032683 84769 Hs.515254 NM_032683 ENSG00000254858 MPV17L2 FKSG24 MPV17 mitochondrial inner membrane protein like 2 protein-coding 1708 chr1 151311667 151311804 + 0 NA intron (NM_002651, intron 3 of 12) intron (NM_002651, intron 3 of 12) 15980 NM_001198775 5298 Hs.632465 NM_002651 ENSG00000143393 PI4KB NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB phosphatidylinositol 4-kinase beta protein-coding 2220 chr1 184213078 184213182 + 0 NA Intergenic MIRb|SINE|MIR 161479 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 1591 chr1 117673506 117673610 + 0 NA Intergenic MIRc|SINE|MIR 67576 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 FAM46C - family with sequence similarity 46 member C protein-coding 8043 chr13 29850618 29850768 + 0 NA promoter-TSS (NM_007106) promoter-TSS (NM_007106) -10 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 11877 chr17 879604 879787 + 0 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) -15584 NM_001205319 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 17005 chr2 208175414 208175518 + 0 NA intron (NM_001099334, intron 6 of 8) intron (NM_001099334, intron 6 of 8) -11893 NM_014617 1418 Hs.122566 NM_014617 ENSG00000168582 CRYGA CRY-g-A|CRYG1|CRYG5 crystallin gamma A protein-coding 2174 chr1 181251305 181251409 + 0 NA Intergenic HERVK11-int|LTR|ERVK 14969 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 23652 chr5 160924038 160924178 + 0 NA Intergenic Intergenic 14518 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 21069 chr3 197367577 197367661 + 0 NA Intergenic Intergenic -68347 NM_001290983 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs large MAGUK scaffold protein 1 protein-coding 25145 chr6 129684118 129684170 + 0 NA intron (NM_033515, intron 1 of 14) intron (NM_033515, intron 1 of 14) 26081 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 11369 chr16 53912241 53912345 + 0 NA intron (NM_001080432, intron 7 of 8) intron (NM_001080432, intron 7 of 8) -127100 NR_103838 100505692 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 15179 chr2 24702972 24703104 + 0 NA intron (NM_147233, intron 9 of 20) intron (NM_147233, intron 9 of 20) -90077 NR_136184 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 5606 chr11 70159787 70159942 + 0 NA intron (NR_030691, intron 14 of 24) intron (NR_030691, intron 14 of 24) -43299 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 28032 chr8 73843021 73843125 + 0 NA intron (NR_073119, intron 1 of 5) L1MB7|LINE|L1 35837 NM_001271015 55284 Hs.128841 NM_018299 ENSG00000104343 UBE2W UBC-16|UBC16 ubiquitin conjugating enzyme E2 W protein-coding 1390 chr1 98921904 98922008 + 0 NA exon (NM_001010861, exon 4 of 6) exon (NM_001010861, exon 4 of 6) -82320 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 29425 chr9 85402200 85402304 + 0 NA Intergenic Intergenic 339777 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13214 chr18 3013248 3013352 + 0 NA Intergenic (CGCCGCG)n|Simple_repeat|Simple_repeat -1353 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 15815 chr2 73983769 73983873 + 0 NA Intergenic Intergenic -2382 NR_104030 100874048 Hs.600674 NR_104029 ENSG00000237883 DGUOK-AS1 - DGUOK antisense RNA 1 ncRNA 19171 chr3 12557059 12557161 + 0 NA promoter-TSS (NM_014160) promoter-TSS (NM_014160) 96 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 9268 chr14 68521055 68521193 + 0 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 107663 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 12149 chr17 16653697 16653710 + 0 NA intron (NM_020787, intron 1 of 5) CpG 150 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 1977 chr1 164735824 164735928 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 38765 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 2023 chr1 167790225 167790309 + 0 NA 3' UTR (NM_001146191, exon 3 of 3) 3' UTR (NM_001146191, exon 3 of 3) 68317 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 27209 chr7 149460619 149460747 + 0 NA intron (NM_015694, intron 1 of 5) CpG 279 NM_015694 27153 Hs.38512 NM_015694 ENSG00000196453 ZNF777 - zinc finger protein 777 protein-coding 4387 chr10 114026616 114026768 + 0 NA Intergenic Intergenic -17355 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 9788 chr15 22895544 22895735 + 0 NA intron (NM_001033028, intron 7 of 15) MER77B|LTR|ERVL 21674 NM_001033028 23191 Hs.26704 NM_014608 ENSG00000273749 CYFIP1 P140SRA-1|SHYC|SRA-1|SRA1 cytoplasmic FMR1 interacting protein 1 protein-coding 29975 chr9 116101675 116101779 + 0 NA Intergenic Intergenic -52065 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 11822 chr16 87790151 87790271 + 0 NA Intergenic Intergenic -11063 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 3445 chr10 24724658 24724809 + 0 NA Intergenic CpG-2738 -1065 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 1669 chr1 149939170 149939255 + 0 NA Intergenic Intergenic -2314 NM_001145862 10903 Hs.425144 NM_006697 ENSG00000014914 MTMR11 CRA myotubularin related protein 11 protein-coding 1825 chr1 155857201 155857330 + 0 NA promoter-TSS (NM_001282858) promoter-TSS (NM_001282858) 30 NM_001282860 54856 Hs.656361 NM_032292 ENSG00000116580 GON4L GON-4|GON4|YARP gon-4 like protein-coding 27118 chr7 140564813 140564963 + 0 NA intron (NM_015689, intron 9 of 19) intron (NM_015689, intron 9 of 19) 37654 NR_134477 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 26764 chr7 104943606 104943651 + 0 NA Intergenic Intergenic -16983 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 23137 chr5 126354360 126354464 + 0 NA Intergenic Intergenic -5684 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 24872 chr6 84764624 84764733 + 0 NA promoter-TSS (NM_001080508) promoter-TSS (NM_001080508) -442 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 1285 chr1 90417286 90417390 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger 299899 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 27024 chr7 131654729 131654833 + 0 NA Intergenic Intergenic -98164 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 22322 chr5 21459439 21459587 + 0 NA promoter-TSS (NR_027027) promoter-TSS (NR_027027) 33 NR_027027 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - glucuronidase, beta pseudogene 1 pseudo 7335 chr12 82651593 82651697 + 0 NA Intergenic Intergenic -35510 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 22239 chr5 13944886 13944967 + 0 NA promoter-TSS (NM_001369) promoter-TSS (NM_001369) -446 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 20846 chr3 185537503 185537621 + 0 NA intron (NM_139248, intron 1 of 9) intron (NM_139248, intron 1 of 9) 15019 NM_139248 200879 Hs.68864 NM_139248 ENSG00000163898 LIPH AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1 lipase H protein-coding 12873 chr17 66275730 66275834 + 0 NA Intergenic Intergenic -27026 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PRKACA protein kinase C alpha protein-coding 1959 chr1 162908957 162909061 + 0 NA Intergenic MIRc|SINE|MIR -40194 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 13578 chr18 50870258 50870362 + 0 NA Intergenic AluSz6|SINE|Alu -8752 NM_001168335 4200 Hs.233119 NM_002396 ENSG00000082212 ME2 ODS1 malic enzyme 2 protein-coding 27108 chr7 140059460 140059564 + 0 NA intron (NR_130117, intron 1 of 10) intron (NR_130117, intron 1 of 10) 4209 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 11167 chr16 25633600 25633693 + 0 NA Intergenic Intergenic -58380 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 28789 chr8 142669959 142670110 + 0 NA promoter-TSS (NR_033343) promoter-TSS (NR_033343) -40 NM_001279352 8629 Hs.535903 NM_003724 ENSG00000234616 JRK JH8|jerky Jrk helix-turn-helix protein protein-coding 3542 chr10 32446118 32446153 + 0 NA promoter-TSS (NR_120660) promoter-TSS (NR_120660) 53 NR_109826 79741 Hs.585464 NM_024688 ENSG00000150076 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 13403 chr18 31943096 31943266 + 0 NA promoter-TSS (NM_014939) promoter-TSS (NM_014939) -53 NM_014939 22878 Hs.202001 NM_014939 ENSG00000153339 TRAPPC8 GSG1|HsT2706|KIAA1012|TRS85 trafficking protein particle complex 8 protein-coding 11627 chr16 74666914 74667031 + 0 NA promoter-TSS (NM_018124) promoter-TSS (NM_018124) -91 NM_018124 55159 Hs.567525 NM_018124 ENSG00000168411 RFWD3 RNF201 ring finger and WD repeat domain 3 protein-coding 10803 chr15 99926364 99926468 + 0 NA Intergenic CpG 119393 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 11814 chr16 87392178 87392324 + 0 NA promoter-TSS (NM_001282683) promoter-TSS (NM_001282683) 56 NM_022818 81631 Hs.356061 NM_022818 ENSG00000140941 MAP1LC3B ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a microtubule associated protein 1 light chain 3 beta protein-coding 16575 chr2 163266983 163267087 + 0 NA Intergenic L1ME1|LINE|L1 -428288 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 18102 chr20 45857318 45857498 + 0 NA promoter-TSS (NM_005469) promoter-TSS (NM_005469) 1 NM_005469 10005 Hs.444776 NM_005469 ENSG00000101473 ACOT8 HNAACTE|NAP1|PTE-1|PTE-2|PTE1|PTE2|hACTE-III|hTE acyl-CoA thioesterase 8 protein-coding 519 chr1 31182533 31182533 + 0 NA exon (NM_024522, exon 5 of 7) exon (NM_024522, exon 5 of 7) 57354 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C Sodium/potassium transporting ATPase interacting 1 protein-coding 20653 chr3 171830044 171830148 + 0 NA Intergenic Intergenic -13253 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 11390 chr16 55966195 55966299 + 0 NA Intergenic Intergenic -10216 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 5070 chr11 29261096 29261232 + 0 NA Intergenic L1PA16|LINE|L1 721229 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 27385 chr8 10799911 10800056 + 0 NA intron (NM_001284356, intron 5 of 5) MIRb|SINE|MIR 25460 NR_031711 100302166 NR_031711 ENSG00000283210 MIR1322 MIRN1322|hsa-mir-1322 microRNA 1322 ncRNA 6383 chr11 131978037 131978141 + 0 NA intron (NM_001144058, intron 1 of 7) intron (NM_001144058, intron 1 of 7) 67271 NM_016522 50863 Hs.504352 NM_016522 ENSG00000182667 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 8621 chr13 110713004 110713034 + 0 NA promoter-TSS (NM_198218) promoter-TSS (NM_198218) -244 NM_198218 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 22985 chr5 107572242 107572388 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 98580 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 7059 chr12 53321328 53321452 + 0 NA exon (NM_015665, exon 1 of 16) exon (NM_015665, exon 1 of 16) 238 NM_001173466 8086 Hs.369144 NM_015665 ENSG00000094914 AAAS AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003 aladin WD repeat nucleoporin protein-coding 5119 chr11 33700763 33700867 + 0 NA promoter-TSS (NM_001166692) promoter-TSS (NM_001166692) -75 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 19337 chr3 36380362 36380472 + 0 NA promoter-TSS (NM_001292049) promoter-TSS (NM_001292049) -70 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 15644 chr2 63050532 63050636 + 0 NA promoter-TSS (NR_130153) promoter-TSS (NR_130153) -218 NR_130153 5013 Hs.734360 NM_014562 ENSG00000115507 OTX1 - orthodenticle homeobox 1 protein-coding 4861 chr11 13140980 13141084 + 0 NA Intergenic Intergenic 131609 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 25678 chr7 12130869 12130962 + 0 NA Intergenic L2|LINE|L2 -80307 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B - transmembrane protein 106B protein-coding 9246 chr14 67359916 67360020 + 0 NA promoter-TSS (NM_015994) promoter-TSS (NM_015994) 35 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 25640 chr7 6706877 6707059 + 0 NA promoter-TSS (NM_006956) promoter-TSS (NM_006956) -33 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 8215 chr13 45341201 45341345 + 0 NA promoter-TSS (NR_024458) promoter-TSS (NR_024458) 11 NM_001286273 7178 Hs.374596 NM_003295 ENSG00000133112 TPT1 HRF|TCTP|p02|p23 tumor protein, translationally-controlled 1 protein-coding 8139 chr13 39603153 39603260 + 0 NA promoter-TSS (NM_005780) promoter-TSS (NM_005780) 13 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFP - lipoma HMGIC fusion partner protein-coding 16082 chr2 106194442 106194595 + 0 NA promoter-TSS (NM_001253875) promoter-TSS (NM_001253875) -179 NM_025076 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 9646 chr14 98909531 98909565 + 0 NA Intergenic MIR|SINE|MIR 197935 NM_001346978 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 2210 chr1 183198623 183198727 + 0 NA intron (NM_005562, intron 1 of 22) intron (NM_005562, intron 1 of 22) 12636 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 26114 chr7 41117585 41117710 + 0 NA intron (NR_110832, intron 3 of 5) intron (NR_110832, intron 3 of 5) 16043 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 23802 chr5 178153936 178154069 + 0 NA promoter-TSS (NM_001034833) promoter-TSS (NM_001034833) -42 NM_001034833 55651 Hs.744074 NM_017838 ENSG00000145912 NHP2 DKCB2|NHP2P|NOLA2 NHP2 ribonucleoprotein protein-coding 8112 chr13 35953732 35953836 + 0 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) -97923 NM_001195416 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 9686 chr14 101761424 101761514 + 0 NA promoter-TSS (NM_001161725) promoter-TSS (NM_001161725) -329 NM_001161726 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 10621 chr15 85840666 85840717 + 0 NA Intergenic CpG 15056 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 6644 chr12 13167376 13167416 + 0 NA Intergenic Intergenic -29272 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 22874 chr5 91219334 91219438 + 0 NA Intergenic Intergenic 95016 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 21586 chr4 90951145 90951249 + 0 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 716166 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 10703 chr15 90412858 90412962 + 0 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 24669 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 12792 chr17 59893017 59893121 + 0 NA promoter-TSS (NM_001193609) promoter-TSS (NM_001193609) 23 NM_001272043 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 25862 chr7 23570723 23570858 + 0 NA Intergenic L1M1|LINE|L1 15737 NR_002711 1197 Hs.632635 NR_002711 CLK2P1 CLK2P CDC like kinase 2, pseudogene 1 pseudo 21221 chr4 19945993 19946097 + 0 NA Intergenic MER50|LTR|ERV1 -305860 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 8530 chr13 102798989 102799133 + 0 NA promoter-TSS (NM_001159596) promoter-TSS (NM_001159596) -7 NM_024089 79070 Hs.408629 NM_024089 ENSG00000134901 KDELC1 EP58|ERp58|KDEL1 KDEL motif containing 1 protein-coding 28513 chr8 119354216 119354260 + 0 NA Intergenic Intergenic 29067 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 24408 chr6 33271896 33272050 + 0 NA promoter-TSS (NM_001289175).4 promoter-TSS (NM_001289175).4 -8 NM_022553 6293 Hs.480356 NM_022553 ENSG00000223501 VPS52 ARE1|SAC2|SACM2L|dJ1033B10.5 VPS52, GARP complex subunit protein-coding 8491 chr13 98910651 98910755 + 0 NA intron (NM_001130049, intron 9 of 32) intron (NM_001130049, intron 9 of 32) 67381 NM_001130048 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 25569 chr7 3203717 3203821 + 0 NA Intergenic Intergenic -45196 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 27538 chr8 23457658 23457704 + 0 NA promoter-TSS (NM_001128930) promoter-TSS (NM_001128930) 50 NM_004901 9583 Hs.444389 NM_004901 ENSG00000197217 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 24618 chr6 45378078 45378233 + 0 NA promoter-TSS (NM_181356) promoter-TSS (NM_181356) -104 NM_003599 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 8999 chr14 51873258 51873387 + 0 NA intron (NM_001243774, intron 1 of 2) intron (NM_001243774, intron 1 of 2) 13018 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 29919 chr9 113876384 113876402 + 0 NA exon (NM_001318040, exon 1 of 14) exon (NM_001318040, exon 1 of 14) 111 NM_133374 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 25873 chr7 24755752 24755840 + 0 NA intron (NM_004403, intron 1 of 9) intron (NM_004403, intron 1 of 9) 1668 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 DFNA5 ICERE-1 DFNA5, deafness associated tumor suppressor protein-coding 10251 chr15 63042485 63042589 + 0 NA promoter-TSS (NM_000366) promoter-TSS (NM_000366) -102 NM_001018006 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 (alpha) protein-coding 26161 chr7 44019203 44019357 + 0 NA promoter-TSS (NR_003655) promoter-TSS (NR_003655) -86 NR_003655 84820 Hs.657028 NM_032734 ENSG00000214783 POLR2J4 RPB11-phi RNA polymerase II subunit J4, pseudogene pseudo 13925 chr19 3276354 3276439 + 0 NA intron (NR_033342, intron 4 of 12) intron (NR_033342, intron 4 of 12) 50911 NR_033342 60680 Hs.655747 NM_021938 ENSG00000161082 CELF5 BRUNOL-5|BRUNOL5|CELF-5 CUGBP, Elav-like family member 5 protein-coding 12665 chr17 50178392 50178542 + 0 NA Intergenic Intergenic -5991 NR_024193 373861 Hs.25934 NM_194072 HILS1 H1.9 histone linker H1 domain, spermatid-specific 1 (pseudogene) pseudo 13199 chr18 158402 158568 + 0 NA promoter-TSS (NM_001037334) promoter-TSS (NM_001037334) 2 NM_005151 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 28755 chr8 139277369 139277473 + 0 NA Intergenic Intergenic -363415 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 17495 chr20 3846684 3846819 + 0 NA promoter-TSS (NM_001206491) promoter-TSS (NM_001206491) -48 NR_037921 57506 Hs.570362 NM_020746 ENSG00000088888 MAVS CARDIF|IPS-1|IPS1|VISA mitochondrial antiviral signaling protein protein-coding 4626 chr10 131913965 131914069 + 0 NA intron (NM_001291310, intron 3 of 9) intron (NM_001291310, intron 3 of 9) 13373 NR_033191 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 17401 chr2 241315746 241315843 + 0 NA promoter-TSS (NM_001321032) promoter-TSS (NM_001321032) 48 NM_005336 3069 Hs.471851 NM_005336 ENSG00000115677 HDLBP HBP|PRO2900|VGL high density lipoprotein binding protein protein-coding 25060 chr6 117440849 117440950 + 0 NA Intergenic MER57D|LTR|ERV1 -15044 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 15673 chr2 64839022 64839027 + 0 NA Intergenic Intergenic 24607 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 8431 chr13 85799377 85799529 + 0 NA promoter-TSS (NM_032229) promoter-TSS (NM_032229) -105 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 7993 chr13 25733314 25733418 + 0 NA intron (NM_001313741, intron 25 of 35) intron (NM_001313741, intron 25 of 35) 264592 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 28089 chr8 80915085 80915189 + 0 NA Intergenic MIRb|SINE|MIR -40356 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 17208 chr2 226652619 226652745 + 0 NA Intergenic Charlie13a|DNA|hAT-Charlie 6111 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 16633 chr2 169827351 169827476 + 0 NA promoter-TSS (NM_172070) promoter-TSS (NM_172070) -95 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 (putative) protein-coding 25800 chr7 20241568 20241698 + 0 NA Intergenic Intergenic 24056 NR_134569 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 5885 chr11 94747275 94747379 + 0 NA Intergenic Intergenic -6972 NR_135096 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 26253 chr7 49424258 49424362 + 0 NA Intergenic Intergenic -349351 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 25106 chr6 125192345 125192449 + 0 NA intron (NM_001003395, intron 1 of 6) intron (NM_001003395, intron 1 of 6) -11242 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 tumor protein D52-like 1 protein-coding 20346 chr3 146581320 146581495 + 0 NA intron (NM_001321245, intron 7 of 7) L2a|LINE|L2 24809 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 28928 chr9 13718159 13718263 + 0 NA Intergenic Intergenic -209760 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 26918 chr7 121544922 121545076 + 0 NA Intergenic MER92C|LTR|ERV1 -148631 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 26661 chr7 98281181 98281285 + 0 NA promoter-TSS (NM_015379) promoter-TSS (NM_015379) -434 NM_015379 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 14197 chr19 15125735 15125885 + 0 NA promoter-TSS (NM_006844) promoter-TSS (NM_006844) -11 NM_006844 10994 Hs.78880 NM_006844 ENSG00000105135 ILVBL 209L8|AHAS|HACL1L|ILV2H ilvB acetolactate synthase like protein-coding 25071 chr6 118935172 118935328 + 0 NA promoter-TSS (NM_153255) promoter-TSS (NM_153255) -88 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 6235 chr11 122203101 122203205 + 0 NA promoter-TSS (NR_024430) promoter-TSS (NR_024430) -44 NR_137181 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 27176 chr7 144407473 144407576 + 0 NA intron (NM_001080413, intron 1 of 9) intron (NM_001080413, intron 1 of 9) 2703 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 11547 chr16 68921762 68921900 + 0 NA intron (NM_024562, intron 12 of 17) intron (NM_024562, intron 12 of 17) 78225 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 22815 chr5 82406436 82406487 + 0 NA Intergenic Intergenic 126999 NM_001017971 92270 Hs.729805 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 21463 chr4 75940979 75941030 + 0 NA promoter-TSS (NM_014435) promoter-TSS (NM_014435) 9 NM_014435 27163 Hs.437365 NM_014435 ENSG00000138744 NAAA ASAHL|PLT N-acylethanolamine acid amidase protein-coding 27531 chr8 23224990 23225151 + 0 NA promoter-TSS (NM_003844) promoter-TSS (NM_003844) 97 NM_003844 8797 Hs.213467 NM_003844 ENSG00000104689 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 TNF receptor superfamily member 10a protein-coding 13519 chr18 47884067 47884085 + 0 NA intron (NM_001003652, intron 2 of 10) LTR52|LTR|ERVL 46523 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 9875 chr15 36591074 36591178 + 0 NA intron (NM_001321758, intron 1 of 8) intron (NM_001321758, intron 1 of 8) -3743 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 15781 chr2 71227381 71227453 + 0 NA promoter-TSS (NM_020459) promoter-TSS (NM_020459) -314 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 13009 chr17 75525292 75525370 + 0 NA promoter-TSS (NM_001015002) promoter-TSS (NM_001015002) -371 NM_001015002 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL2, scribble cell polarity complex component protein-coding 23172 chr5 129094645 129094697 + 0 NA promoter-TSS (NM_016048) promoter-TSS (NM_016048) -78 NM_016048 51015 Hs.483296 NM_016048 ENSG00000066583 ISOC1 CGI-111 isochorismatase domain containing 1 protein-coding 27556 chr8 24509626 24509730 + 0 NA TTS (NM_003817) TTS (NM_003817) 5190 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 26015 chr7 33773229 33773333 + 0 NA Intergenic Intergenic -131630 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 24143 chr6 18434535 18434685 + 0 NA intron (NM_182757, intron 3 of 7) intron (NM_182757, intron 3 of 7) 47260 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 7659 chr12 111369056 111369160 + 0 NA promoter-TSS (NM_001177997) promoter-TSS (NM_001177997) 13 NM_001177996 144717 Hs.173088 NM_144671 ENSG00000198324 FAM109A IPIP27A|SES1 family with sequence similarity 109 member A protein-coding 28011 chr8 71562640 71562744 + 0 NA Intergenic Intergenic -200460 NM_001288574 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 16295 chr2 128233679 128233783 + 0 NA Intergenic CpG 84866 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 18244 chr20 53413339 53413443 + 0 NA intron (NM_173485, intron 2 of 2) AluJb|SINE|Alu -139379 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 556 chr1 32651099 32651203 + 0 NA promoter-TSS (NM_001308135) promoter-TSS (NM_001308135) 3 NM_005610 5928 Hs.16003 NM_005610 ENSG00000162521 RBBP4 NURF55|RBAP48|lin-53 RB binding protein 4, chromatin remodeling factor protein-coding 21995 chr4 168816723 168816827 + 0 NA intron (NM_001166109, intron 9 of 18) intron (NM_001166109, intron 9 of 18) -15230 NM_001166110 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 21808 chr4 135508444 135508548 + 0 NA Intergenic Intergenic 379597 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 27993 chr8 70172866 70172970 + 0 NA intron (NM_001321713, intron 4 of 21) intron (NM_001321713, intron 4 of 21) -101591 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 20173 chr3 133383281 133383410 + 0 NA intron (NM_023943, intron 4 of 5) MIR1_Amn|SINE|MIR -16650 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 7882 chr12 130098145 130098249 + 0 NA Intergenic L2b|LINE|L2 -55855 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LOC100190940 - uncharacterized LOC100190940 ncRNA 2817 chr1 224542901 224543049 + 0 NA intron (NM_001322304, intron 2 of 6) MER21C|LTR|ERVL -73502 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 22089 chr4 184347454 184347563 + 0 NA intron (NR_040108, intron 2 of 2) intron (NR_040108, intron 2 of 2) 6469 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LOC728175 - uncharacterized LOC728175 ncRNA 7838 chr12 123712558 123712653 + 0 NA exon (NM_012463, exon 1 of 20) exon (NM_012463, exon 1 of 20) 287 NM_012463 23545 Hs.25786 NM_012463 ENSG00000185344 ATP6V0A2 A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS ATPase H+ transporting V0 subunit a2 protein-coding 7250 chr12 69738603 69738707 + 0 NA promoter-TSS (NM_022456) promoter-TSS (NM_022456) -31 NR_103519 117177 Hs.258209 NM_022456 ENSG00000127328 RAB3IP RABIN3|RABIN8 RAB3A interacting protein protein-coding 8299 chr13 52455335 52455463 + 0 NA promoter-TSS (NM_001098525) promoter-TSS (NM_001098525) 39 NM_001286687 26586 Hs.444028 NM_018204 ENSG00000136108 CKAP2 LB1|TMAP|se20-10 cytoskeleton associated protein 2 protein-coding 28712 chr8 132881922 132882026 + 0 NA intron (NM_003235, intron 6 of 47) intron (NM_003235, intron 6 of 47) 15014 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 15905 chr2 85499286 85499306 + 0 NA Intergenic MER57B2|LTR|ERV1 39590 NR_038942 100630918 Hs.66049 NR_038942 PARTICL PARTICLE promoter of MAT2A antisense radiation-induced circulating long non-coding RNA ncRNA 20686 chr3 175347058 175347162 + 0 NA intron (NM_207015, intron 5 of 13) intron (NM_207015, intron 5 of 13) -22430 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 25778 chr7 18893301 18893469 + 0 NA intron (NM_178425, intron 21 of 24) intron (NM_178425, intron 21 of 24) 224287 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 1605 chr1 119374540 119374644 + 0 NA intron (NM_016527, intron 1 of 7) intron (NM_016527, intron 1 of 7) 5646 NR_046780 100874270 NR_046780 ENSG00000230921 HAO2-IT1 - HAO2 intronic transcript 1 ncRNA 27502 chr8 22204258 22204272 + 0 NA intron (NM_006129, intron 16 of 19) intron (NM_006129, intron 16 of 19) 28073 NM_001099335 9796 Hs.334688 NM_014759 ENSG00000168490 PHYHIP DYRK1AP3|PAHX-AP|PAHXAP1 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding 20016 chr3 121749753 121749952 + 0 NA promoter-TSS (NM_001256487) promoter-TSS (NM_001256487) -85 NM_001256486 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 6892 chr12 42482943 42483047 + 0 NA intron (NM_153026, intron 1 of 7) CpG 619 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 28177 chr8 90671029 90671172 + 0 NA Intergenic Intergenic -25195 NM_001146273 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 6373 chr11 130847737 130847871 + 0 NA intron (NR_125383, intron 3 of 5) MER44C|DNA|TcMar-Tigger 14306 NR_125383 100507431 Hs.375101 NR_125383 LOC100507431 - uncharacterized LOC100507431 ncRNA 24425 chr6 33789138 33789270 + 0 NA promoter-TSS (NM_181336) promoter-TSS (NM_181336) -75 NM_181336 221496 Hs.444845 NM_181336 ENSG00000161904 LEMD2 CTRCT42|NET25|dJ482C21.1 LEM domain containing 2 protein-coding 29500 chr9 89604935 89605005 + 0 NA promoter-TSS (NM_006705) promoter-TSS (NM_006705) -42 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 1945 chr1 162133844 162133948 + 0 NA intron (NM_014697, intron 1 of 9) intron (NM_014697, intron 1 of 9) -23211 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 969 chr1 59892995 59893189 + 0 NA TTS (NR_134981) TTS (NR_134981) 33706 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 26403 chr7 73794260 73794395 + 0 NA Intergenic L1ME3Cz|LINE|L1 -24057 NM_001306 1365 Hs.647023 NM_001306 ENSG00000165215 CLDN3 C7orf1|CPE-R2|CPETR2|HRVP1|RVP1 claudin 3 protein-coding 19928 chr3 114649456 114649598 + 0 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) -24582 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 23536 chr5 151241525 151241584 + 0 NA Intergenic Intergenic -11498 NM_001167607 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 29193 chr9 71758925 71759090 + 0 NA intron (NM_013390, intron 1 of 23) intron (NM_013390, intron 1 of 23) 9877 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 31163 chrX 152896617 152896664 + 0 NA Intergenic L2b|LINE|L2 -17802 NM_001178106 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 (LIM domain) protein-coding 29524 chr9 91164823 91164947 + 0 NA intron (NR_135306, intron 2 of 2) intron (NR_135306, intron 2 of 2) 45823 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 9477 chr14 81435558 81435662 + 0 NA Intergenic Intergenic -8206 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 19088 chr3 4868424 4868555 + 0 NA Intergenic CpG 38012 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 4207 chr10 99977130 99977263 + 0 NA intron (NM_015221, intron 1 of 16) intron (NM_015221, intron 1 of 16) 32757 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 4089 chr10 93425267 93425350 + 0 NA intron (NM_133337, intron 5 of 52) intron (NM_133337, intron 5 of 52) 57009 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 1501 chr1 110771395 110771499 + 0 NA Intergenic L4_A_Mam|LINE|RTE-X -96414 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 15389 chr2 38751366 38751460 + 0 NA promoter-TSS (NM_001031684) promoter-TSS (NM_001031684) 81 NM_001031684 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 15308 chr2 31384835 31384962 + 0 NA intron (NM_000379, intron 9 of 35) intron (NM_000379, intron 9 of 35) 29847 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 549 chr1 32273934 32274023 + 0 NA promoter-TSS (NM_001042771) promoter-TSS (NM_001042771) -133 NM_001042771 3932 Hs.470627 NM_005356 ENSG00000182866 LCK IMD22|LSK|YT16|p56lck|pp58lck LCK proto-oncogene, Src family tyrosine kinase protein-coding 17983 chr20 38446647 38446758 + 0 NA promoter-TSS (NR_003239) promoter-TSS (NR_003239) 48 NR_003239 128439 Hs.16936 NM_139016 ENSG00000174365 SNHG11 C20orf198|LINC00101|NCRNA00101 small nucleolar RNA host gene 11 ncRNA 13815 chr18 79062960 79063064 + 0 NA Intergenic MER74A|LTR|ERVL -6263 NM_001306085 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 19303 chr3 31041512 31041556 + 0 NA Intergenic Intergenic 120253 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 27161 chr7 143285524 143285683 + 0 NA 5' UTR (NM_001242774, exon 3 of 5) 5' UTR (NM_001242774, exon 3 of 5) 653 NM_001282876 135932 Hs.17558 NM_153345 ENSG00000178826 TMEM139 - transmembrane protein 139 protein-coding 16370 chr2 135948713 135948847 + 0 NA intron (NM_001349, intron 4 of 15) AluSz|SINE|Alu -36396 NR_110200 101928243 Hs.602178 NR_110199 ENSG00000231890 DARS-AS1 - DARS antisense RNA 1 ncRNA 13501 chr18 46072256 46072335 + 0 NA promoter-TSS (NM_024430) promoter-TSS (NM_024430) -11 NM_024430 9050 Hs.567384 NM_024430 ENSG00000152229 PSTPIP2 MAYP proline-serine-threonine phosphatase interacting protein 2 protein-coding 28707 chr8 132120492 132120596 + 0 NA TTS (NM_001204824) TTS (NM_001204824) -15279 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 25895 chr7 25857104 25857228 + 0 NA Intergenic CpG 92820 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 18963 chr22 41800496 41800623 + 0 NA promoter-TSS (NM_001304797) promoter-TSS (NM_001304797) -63 NM_001304797 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 22917 chr5 96177518 96177642 + 0 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 98442 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 946 chr1 58815284 58815426 + 0 NA intron (NR_108106, intron 1 of 1) CpG 30204 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 13569 chr18 50281559 50281709 + 0 NA TTS (NM_014593) TTS (NM_014593) 133 NM_001204143 4152 Hs.405610 NM_002384 ENSG00000141644 MBD1 CXXC3|PCM1|RFT methyl-CpG binding domain protein 1 protein-coding 7230 chr12 65169425 65169550 + 0 NA promoter-TSS (NM_014319) promoter-TSS (NM_014319) -84 NM_014319 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 16907 chr2 200525999 200526157 + 0 NA promoter-TSS (NM_001160046) promoter-TSS (NM_001160046) -64 NM_152524 151246 Hs.655182 NM_152524 ENSG00000163535 SGO2 SGOL2|TRIPIN shugoshin 2 protein-coding 12166 chr17 17711016 17711187 + 0 NA intron (NM_030665, intron 1 of 5) intron (NM_030665, intron 1 of 5) 29628 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 1361 chr1 95554622 95554694 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR 44542 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LOC100996635 - uncharacterized LOC100996635 ncRNA 28344 chr8 102239312 102239332 + 0 NA promoter-TSS (NM_001172478) promoter-TSS (NM_001172478) -129 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 30300 chr9 132670353 132670461 + 0 NA promoter-TSS (NM_001322344) promoter-TSS (NM_001322344) -6 NM_138620 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding 15522 chr2 48344273 48344438 + 0 NA intron (NM_002158, intron 2 of 6) intron (NM_002158, intron 2 of 6) 29699 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 23601 chr5 157731657 157731811 + 0 NA promoter-TSS (NM_001317826) promoter-TSS (NM_001317826) -79 NM_001317826 54974 Hs.353090 NM_017872 ENSG00000113272 THG1L ICF45|IHG-1|hTHG1 tRNA-histidine guanylyltransferase 1 like protein-coding 12809 chr17 61863518 61863622 + 0 NA promoter-TSS (NM_032043) promoter-TSS (NM_032043) -11 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 24519 chr6 39303234 39303392 + 0 NA intron (NM_001135111, intron 4 of 5) intron (NM_001135111, intron 4 of 5) 11147 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 28386 chr8 104957325 104957429 + 0 NA Intergenic Intergenic -361542 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 17961 chr20 37178980 37179104 + 0 NA promoter-TSS (NM_002951) promoter-TSS (NM_002951) -4 NM_001324303 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 11381 chr16 55465180 55465331 + 0 NA Intergenic Intergenic -13575 NM_001302508 4313 Hs.513617 NM_004530 ENSG00000087245 MMP2 CLG4|CLG4A|MMP-2|MMP-II|MONA|TBE-1 matrix metallopeptidase 2 protein-coding 28620 chr8 126609617 126609748 + 0 NA Intergenic MIRb|SINE|MIR -51216 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 17577 chr20 10434539 10434693 + 0 NA promoter-TSS (NR_072977) promoter-TSS (NR_072977) -377 NM_170784 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 29676 chr9 98782093 98782275 + 0 NA intron (NM_173551, intron 5 of 14) intron (NM_173551, intron 5 of 14) 14358 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 12105 chr17 10669015 10669119 + 0 NA Intergenic MIRc|SINE|MIR -11758 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 DA2A|DA2B|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 3678 chr10 50624682 50624685 + 0 NA promoter-TSS (NR_126411) promoter-TSS (NR_126411) -268 NR_126411 104355295 Hs.450493 NR_126411 SGMS1-AS1 - SGMS1 antisense RNA 1 ncRNA 11089 chr16 19555369 19555509 + 0 NA promoter-TSS (NM_001300743) promoter-TSS (NM_001300743) 24 NM_020314 57020 Hs.654964 NM_020314 ENSG00000103544 C16orf62 - chromosome 16 open reading frame 62 protein-coding 24141 chr6 18368911 18369046 + 0 NA Intergenic Intergenic -18372 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 12422 chr17 38730149 38730253 + 0 NA promoter-TSS (NM_001136498) promoter-TSS (NM_001136498) -56 NM_001136498 284106 Hs.713595 NM_001136498 ENSG00000277972 CISD3 Miner2 CDGSH iron sulfur domain 3 protein-coding 19081 chr3 4467197 4467301 + 0 NA promoter-TSS (NM_001164674) promoter-TSS (NM_001164674) 33 NM_001164674 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 583 chr1 33244203 33244347 + 0 NA Intergenic Intergenic -12298 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 27162 chr7 143288198 143288357 + 0 NA promoter-TSS (NM_032982) promoter-TSS (NM_032982) 62 NM_032983 835 Hs.368982 NM_001224 ENSG00000106144 CASP2 CASP-2|ICH1|NEDD-2|NEDD2|PPP1R57 caspase 2 protein-coding 17193 chr2 225467419 225467523 + 0 NA intron (NM_020864, intron 2 of 5) MER50|LTR|ERV1 66585 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 18583 chr21 43789498 43789616 + 0 NA promoter-TSS (NM_003683) promoter-TSS (NM_003683) 20 NM_003683 8568 Hs.110757 NM_003683 ENSG00000160214 RRP1 D21S2056E|NNP-1|NOP52|RRP1A ribosomal RNA processing 1 protein-coding 15923 chr2 86195544 86195671 + 0 NA 5' UTR (NM_001100169, exon 1 of 15) 5' UTR (NM_001100169, exon 1 of 15) 163 NM_001100169 10989 Hs.148559 NM_006839 ENSG00000132305 IMMT HMP|MINOS2|Mic60|P87|P87/89|P89|PIG4|PIG52 inner membrane mitochondrial protein protein-coding 22023 chr4 173369820 173369878 + 0 NA Intergenic CpG -1093 NM_003864 8819 Hs.591715 NM_003864 ENSG00000164105 SAP30 - Sin3A associated protein 30 protein-coding 7852 chr12 124838485 124838535 + 0 NA intron (NM_005505, intron 1 of 12) intron (NM_005505, intron 1 of 12) 25463 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 7535 chr12 101877568 101877718 + 0 NA 5' UTR (NM_018370, exon 1 of 7) 5' UTR (NM_018370, exon 1 of 7) 316 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 16425 chr2 145745309 145745413 + 0 NA Intergenic Intergenic -841696 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 8946 chr14 49512461 49512565 + 0 NA Intergenic Intergenic 73903 NM_001032 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 8817 chr14 33121093 33121191 + 0 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 181889 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 15170 chr2 23927254 23927358 + 0 NA promoter-TSS (NR_125717) promoter-TSS (NR_125717) -192 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family, AAA domain containing 2B protein-coding 8808 chr14 32134735 32134887 + 0 NA intron (NM_001173, intron 3 of 6) intron (NM_001173, intron 3 of 6) 57522 NM_001030055 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 28346 chr8 102601074 102601155 + 0 NA Intergenic CpG 49494 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 23308 chr5 138505026 138505142 + 0 NA Intergenic Intergenic 36627 NM_001282185 2107 Hs.483494 NM_004730 ENSG00000120705 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 16876 chr2 197028469 197028573 + 0 NA intron (NM_001195144, intron 16 of 27) LTR67B|LTR|ERVL -101790 NM_001321099 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 2304 chr1 197775937 197776014 + 0 NA promoter-TSS (NM_001195215) promoter-TSS (NM_001195215) -482 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 23284 chr5 136655590 136655658 + 0 NA Intergenic Intergenic -290148 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 2341 chr1 200150775 200150944 + 0 NA intron (NM_001276464, intron 6 of 6) intron (NM_001276464, intron 6 of 6) 108034 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 25350 chr6 151764101 151764192 + 0 NA intron (NM_001122742, intron 2 of 9) MER81|DNA|hAT-Blackjack -41527 NM_001291230 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 13064 chr17 78151503 78151634 + 0 NA intron (NM_001163075, intron 2 of 4) MLT1C|LTR|ERVL-MaLR 5215 NM_001163075 100141515 Hs.633034 NM_001163075 ENSG00000187997 C17orf99 UNQ464 chromosome 17 open reading frame 99 protein-coding 29173 chr9 70925061 70925192 + 0 NA intron (NM_001007471, intron 1 of 24) intron (NM_001007471, intron 1 of 24) -56068 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 31137 chrX 149938473 149938629 + 0 NA promoter-TSS (NR_027456) promoter-TSS (NR_027456) 3 NR_027456 100272228 Hs.496916 NR_027456 ENSG00000235703 LINC00894 - long intergenic non-protein coding RNA 894 ncRNA 14855 chr19 57681875 57681979 + 0 NA promoter-TSS (NM_001270938) promoter-TSS (NM_001270938) -42 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 12410 chr17 37692003 37692085 + 0 NA intron (NM_001304286, intron 6 of 6) intron (NM_001304286, intron 6 of 6) -48580 NM_001291476 11056 Hs.590937 NM_007010 ENSG00000278053 DDX52 HUSSY19|ROK1 DExD-box helicase 52 protein-coding 20416 chr3 151896786 151896890 + 0 NA intron (NR_110202, intron 1 of 3) intron (NR_110202, intron 1 of 3) 23195 NM_033050 56670 Hs.133181 NM_033050 ENSG00000198829 SUCNR1 GPR91 succinate receptor 1 protein-coding 6467 chr12 3999666 3999732 + 0 NA Intergenic MER126|DNA|DNA -126251 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 4990 chr11 19777721 19777825 + 0 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -17690 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 1920 chr1 161020146 161020159 + 0 NA intron (NM_016946, intron 1 of 9) intron (NM_016946, intron 1 of 9) 1191 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 30827 chrX 72620647 72620751 + 0 NA intron (NM_001172436, intron 18 of 29) intron (NM_001172436, intron 18 of 29) -47596 NM_001166418 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 24042 chr6 11632354 11632495 + 0 NA Intergenic Intergenic 94197 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 10947 chr16 4416602 4416738 + 0 NA promoter-TSS (NR_145128) promoter-TSS (NR_145128) 291 NM_001201473 79585 Hs.437957 NM_024535 ENSG00000262246 CORO7 0610011B16Rik|CRN7|POD1 coronin 7 protein-coding 26716 chr7 100875056 100875116 + 0 NA promoter-TSS (NM_001128854) promoter-TSS (NM_001128854) 7 NM_001128852 51593 Hs.111801 NM_015908 ENSG00000087087 SRRT ARS2|ASR2|serrate serrate, RNA effector molecule protein-coding 25665 chr7 7772398 7772578 + 0 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -53881 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 3827 chr10 69507977 69508030 + 0 NA TTS (NM_012339) TTS (NM_012339) 56533 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 17911 chr20 34876208 34876299 + 0 NA promoter-TSS (NM_001076552) promoter-TSS (NM_001076552) -272 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short-chain family member 2 protein-coding 11891 chr17 1400236 1400405 + 0 NA promoter-TSS (NM_006761) promoter-TSS (NM_006761) -58 NM_006761 7531 Hs.513851 NM_006761 ENSG00000108953 YWHAE 14-3-3E|HEL2|KCIP-1|MDCR|MDS tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon protein-coding 4589 chr10 126433535 126433622 + 0 NA intron (NM_001004298, intron 6 of 8) intron (NM_001004298, intron 6 of 8) -11699 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 - long intergenic non-protein coding RNA 601 ncRNA 22506 chr5 52783497 52783601 + 0 NA Intergenic Intergenic -4391 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 2992 chr1 234612714 234612839 + 0 NA Intergenic Intergenic -3251 NM_001077397 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 2639 chr1 212606805 212606941 + 0 NA intron (NM_001030287, intron 1 of 3) CpG -1755 NM_001674 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 29109 chr9 40916112 40916194 + 0 NA Intergenic L1PA3|LINE|L1 12939 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 29779 chr9 107389701 107389779 + 0 NA Intergenic Intergenic 76845 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 21377 chr4 55184417 55184521 + 0 NA Intergenic Intergenic -58874 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 4409 chr10 114648418 114648522 + 0 NA intron (NM_001322885, intron 1 of 20) L1MB7|LINE|L1 9829 NM_002313 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 26664 chr7 98354557 98354780 + 0 NA intron (NM_018842, intron 3 of 13) intron (NM_018842, intron 3 of 13) 46447 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 19432 chr3 44884064 44884246 + 0 NA intron (NM_003241, intron 1 of 13) MER5B|DNA|hAT-Charlie 9549 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 11784 chr16 85028746 85028850 + 0 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) 1047 NM_014732 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 12618 chr17 47970941 47971145 + 0 NA promoter-TSS (NM_001278198) promoter-TSS (NM_001278198) 87 NM_001278217 80279 Hs.20157 NM_025197 ENSG00000108465 CDK5RAP3 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553 CDK5 regulatory subunit associated protein 3 protein-coding 1625 chr1 144104505 144104609 + 0 NA Intergenic (TGGCTGGCT)n|Simple_repeat|Simple_repeat -131038 NM_001346067 554282 NM_001287385 ENSG00000263513 FAM72C - family with sequence similarity 72 member C protein-coding 20404 chr3 151086753 151086857 + 0 NA promoter-TSS (NM_053002) promoter-TSS (NM_053002) 7 NM_053002 116931 Hs.744234 NM_053002 ENSG00000144893 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12 like protein-coding 163 chr1 11012235 11012339 + 0 NA promoter-TSS (NM_007375) promoter-TSS (NM_007375) -335 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 23743 chr5 173302606 173302710 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 26845 NM_003714 8614 Hs.233160 NM_003714 ENSG00000113739 STC2 STC-2|STCRP stanniocalcin 2 protein-coding 13148 chr17 81977350 81977454 + 0 NA promoter-TSS (NM_001251888) promoter-TSS (NM_001251888) -144 NM_001330528 79058 Hs.298351 NM_024083 ENSG00000169696 ASPSCR1 ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9 ASPSCR1, UBX domain containing tether for SLC2A4 protein-coding 26927 chr7 123242788 123242824 + 0 NA Intergenic MLT2B3|LTR|ERVL -42835 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 14058 chr19 9819630 9819734 + 0 NA promoter-TSS (NM_001316940) promoter-TSS (NM_001316940) -579 NM_001316938 54850 Hs.12439 NM_017703 ENSG00000127452 FBXL12 Fbl12 F-box and leucine rich repeat protein 12 protein-coding 12594 chr17 46194013 46194032 + 0 NA intron (NR_034172, intron 1 of 1) CpG 449 NR_034172 644246 Hs.644600 NR_034172 ENSG00000214401 KANSL1-AS1 - KANSL1 antisense RNA 1 ncRNA 12322 chr17 32007280 32007431 + 0 NA promoter-TSS (NM_001321350) promoter-TSS (NM_001321350) -517 NM_001321350 114659 Hs.514071 NM_052888 ENSG00000185158 LRRC37B LRRC37 leucine rich repeat containing 37B protein-coding 1531 chr1 112881128 112881157 + 0 NA Intergenic Intergenic -30499 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 30714 chrX 49184798 49184902 + 0 NA promoter-TSS (NM_001307979) promoter-TSS (NM_001307979) 43 NM_001307979 4007 Hs.732712 NM_006150 ENSG00000012211 PRICKLE3 LMO6 prickle planar cell polarity protein 3 protein-coding 19348 chr3 37183461 37183612 + 0 NA Intergenic Intergenic -7176 NM_001134369 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 8838 chr14 34232933 34233037 + 0 NA Intergenic Intergenic 229277 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 14627 chr19 47648488 47648615 + 0 NA intron (NM_015711, intron 1 of 14) intron (NM_015711, intron 1 of 14) 40355 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 1333 chr1 94300322 94300385 + 0 NA Intergenic Intergenic -52593 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 30814 chrX 71182094 71182160 + 0 NA Intergenic CpG -33085 NM_001097642 2705 Hs.333303 NM_000166 ENSG00000169562 GJB1 CMTX|CMTX1|CX32 gap junction protein beta 1 protein-coding 8022 chr13 27600010 27600174 + 0 NA intron (NM_153371, intron 1 of 9) L2a|LINE|L2 20491 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 26358 chr7 66844920 66845088 + 0 NA promoter-TSS (NR_003934) promoter-TSS (NR_003934) -178 NR_003934 729156 Hs.709878 NR_003934 ENSG00000230583 GTF2IRD1P1 - GTF2I repeat domain containing 1 pseudogene 1 pseudo 25172 chr6 134017959 134018200 + 0 NA intron (NM_145176, intron 2 of 4) intron (NM_145176, intron 2 of 4) 34572 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 14439 chr19 39391098 39391202 + 0 NA promoter-TSS (NM_019088) promoter-TSS (NM_019088) 45 NM_001256826 54623 Hs.466714 NM_019088 ENSG00000006712 PAF1 F23149_1|PD2 PAF1 homolog, Paf1/RNA polymerase II complex component protein-coding 30585 chrX 27598363 27598467 + 0 NA Intergenic HERV1_LTRb|LTR|ERV1 -135074 NR_002784 139420 Hs.350673 NR_002784 ENSG00000224960 PPP4R3CP FLFL3P|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C, pseudogene pseudo 3859 chr10 71773803 71773993 + 0 NA promoter-TSS (NM_022153) promoter-TSS (NM_022153) -318 NM_022153 64115 Hs.47382 NM_022153 ENSG00000107738 VSIR B7-H5|B7H5|C10orf54|DD1alpha|GI24|PD-1H|PP2135|SISP1|VISTA V-set immunoregulatory receptor protein-coding 24495 chr6 37499874 37499981 + 0 NA promoter-TSS (NM_138493) promoter-TSS (NM_138493) -3 NM_138493 154467 Hs.284207 NM_138493 ENSG00000198937 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 20914 chr3 189458582 189458697 + 0 NA Intergenic Intergenic -138107 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 17895 chr20 34334973 34334990 + 0 NA Intergenic Intergenic -23179 NM_001161766 191 Hs.388004 NM_000687 ENSG00000101444 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 25015 chr6 110958632 110958743 + 0 NA 5' UTR (NM_138408, exon 1 of 6) 5' UTR (NM_138408, exon 1 of 6) 127 NM_138408 112495 Hs.418520 NM_138408 ENSG00000155115 GTF3C6 C6orf51|TFIIIC35|bA397G5.3 general transcription factor IIIC subunit 6 protein-coding 28127 chr8 85632532 85632639 + 0 NA Intergenic AluSx|SINE|Alu 23091 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 16668 chr2 172783145 172783318 + 0 NA intron (NM_007023, intron 1 of 30) LTR84b|LTR|ERVL -38356 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 4492 chr10 120012666 120012770 + 0 NA Intergenic Intergenic 54205 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 1577 chr1 116556754 116556894 + 0 NA intron (NM_001144822, intron 1 of 4) MER102a|DNA|hAT-Charlie 3287 NR_039621 100616384 NR_039621 ENSG00000264419 MIR548AC - microRNA 548ac ncRNA 7511 chr12 100142155 100142259 + 0 NA intron (NM_001006947, intron 1 of 12) CpG 657 NM_001006947 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 1572 chr1 116139182 116139355 + 0 NA Intergenic Intergenic 27513 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 20513 chr3 158168191 158168304 + 0 NA intron (NM_001271834, intron 3 of 8) intron (NM_001271834, intron 3 of 8) 58195 NM_016625 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 29218 chr9 72533416 72533587 + 0 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 11700 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 886 chr1 53739241 53739323 + 0 NA Intergenic CpG -5078 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 28485 chr8 118111831 118111935 + 0 NA promoter-TSS (NM_000127) promoter-TSS (NM_000127) -64 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 25979 chr7 30914812 30914916 + 0 NA intron (NM_001329872, intron 1 of 4) intron (NM_001329872, intron 1 of 4) 3170 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 20335 chr3 146160267 146160370 + 0 NA intron (NM_182943, intron 1 of 19) intron (NM_182943, intron 1 of 19) 1177 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 17677 chr20 17505190 17505294 + 0 NA intron (NM_001278608, intron 7 of 9) intron (NM_001278608, intron 7 of 9) 26127 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 4733 chr11 5596119 5596275 + 0 NA promoter-TSS (NM_058166) promoter-TSS (NM_058166) 96 NM_058166 117854 Hs.729048 NM_058166 ENSG00000121236 TRIM6 RNF89 tripartite motif containing 6 protein-coding 27777 chr8 48318465 48318625 + 0 NA Intergenic Intergenic -233022 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 2835 chr1 225755389 225755493 + 0 NA Intergenic MIR1_Amn|SINE|MIR -22372 NM_003133 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 1329 chr1 94045715 94045869 + 0 NA intron (NM_000350, intron 19 of 49) intron (NM_000350, intron 19 of 49) 75357 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 28565 chr8 123241291 123241483 + 0 NA promoter-TSS (NM_032847) promoter-TSS (NM_032847) 11 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 3728 chr10 59894217 59894321 + 0 NA intron (NM_005436, intron 1 of 8) intron (NM_005436, intron 1 of 8) 12387 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 30675 chrX 47658805 47658823 + 0 NA promoter-TSS (NR_028119) promoter-TSS (NR_028119) -19 NR_028119 100133957 Hs.546106 NR_027444 ENSG00000267064 UXT-AS1 - UXT antisense RNA 1 ncRNA 3568 chr10 34721381 34721485 + 0 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 93892 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13071 chr17 78314154 78314172 + 0 NA Intergenic CpG -35671 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 12330 chr17 32486539 32486596 + 0 NA promoter-TSS (NM_003885) promoter-TSS (NM_003885) -520 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 320 chr1 21345497 21345575 + 0 NA promoter-TSS (NM_001113348) promoter-TSS (NM_001113348) 5 NM_001113348 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 26836 chr7 112481888 112482048 + 0 NA intron (NM_182597, intron 1 of 3) intron (NM_182597, intron 1 of 3) 957 NM_182597 286006 Hs.396189 NM_182597 ENSG00000181016 LSMEM1 C7orf53 leucine rich single-pass membrane protein 1 protein-coding 5663 chr11 74417511 74417552 + 0 NA Intergenic Intergenic 18294 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 6561 chr12 8032655 8032759 + 0 NA promoter-TSS (NM_018416) promoter-TSS (NM_018416) -56 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 18538 chr21 38903950 38904083 + 0 NA intron (NR_120405, intron 2 of 3) intron (NR_120405, intron 2 of 3) 34413 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 24994 chr6 108782465 108782569 + 0 NA Intergenic Intergenic 30863 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 811 chr1 46132968 46133125 + 0 NA promoter-TSS (NM_001328652) promoter-TSS (NM_001328652) -10 NM_001328649 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 26113 chr7 41117054 41117079 + 0 NA intron (NR_110832, intron 3 of 5) MLT1K|LTR|ERVL-MaLR 15462 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 11360 chr16 53503330 53503417 + 0 NA promoter-TSS (NM_001308325) promoter-TSS (NM_001308325) -69 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 819 chr1 46303574 46303719 + 0 NA promoter-TSS (NM_006369) promoter-TSS (NM_006369) 33 NM_006004 7388 Hs.481571 NM_006004 ENSG00000173660 UQCRH QCR6|UQCR8 ubiquinol-cytochrome c reductase hinge protein protein-coding 1177 chr1 84103505 84103609 + 0 NA intron (NM_002731, intron 1 of 9) intron (NM_002731, intron 1 of 9) 25582 NM_207578 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 1189 chr1 84619515 84619619 + 0 NA intron (NR_125761, intron 1 of 2) Mam_R4|LINE|Dong-R4 1464 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 27305 chr8 232327 232420 + 0 NA promoter-TSS (NR_003572) promoter-TSS (NR_003572) -24 NM_001042416 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 3680 chr10 51699816 51699945 + 0 NA promoter-TSS (NM_015235) promoter-TSS (NM_015235) -285 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 20755 chr3 180912315 180912459 + 0 NA promoter-TSS (NM_005087) promoter-TSS (NM_005087) -59 NM_005087 8087 Hs.478407 NM_005087 ENSG00000114416 FXR1 FXR1P FMR1 autosomal homolog 1 protein-coding 8185 chr13 42876987 42877100 + 0 NA Intergenic L3|LINE|CR1 -4299 NR_126389 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 16848 chr2 191646221 191646325 + 0 NA Intergenic LTR16A2|LTR|ERVL -31799 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 12256 chr17 28380397 28380447 + 0 NA intron (NM_015077, intron 1 of 8) L2a|LINE|L2 8760 NM_015077 23098 Hs.743510 NM_015077 ENSG00000004139 SARM1 MyD88-5|SAMD2|SARM sterile alpha and TIR motif containing 1 protein-coding 3768 chr10 62816755 62816786 + 0 NA promoter-TSS (NM_001321037) promoter-TSS (NM_001321037) -390 NM_001321037 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 385 chr1 24745062 24745219 + 0 NA promoter-TSS (NM_013943) promoter-TSS (NM_013943) -129 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 25872 chr7 24669013 24669187 + 0 NA intron (NM_001303037, intron 9 of 11) MamRep605|LTR?|LTR? 88364 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 DFNA5 ICERE-1 DFNA5, deafness associated tumor suppressor protein-coding 25755 chr7 17234612 17234654 + 0 NA Intergenic Intergenic -64019 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 5095 chr11 32232026 32232130 + 0 NA Intergenic L1ME3A|LINE|L1 -88166 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 23108 chr5 122907360 122907490 + 0 NA intron (NM_014035, intron 1 of 6) intron (NM_014035, intron 1 of 6) 61960 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 2578 chr1 209823758 209823761 + 0 NA Intergenic Intergenic -4208 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 DIEXF C1orf107|DEF|DJ434O14.5|UTP25 digestive organ expansion factor homolog (zebrafish) protein-coding 29581 chr9 94166057 94166209 + 0 NA Intergenic CpG -9824 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 20454 chr3 154324408 154324565 + 0 NA promoter-TSS (NM_001114397) promoter-TSS (NM_001114397) 11 NM_020865 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 7213 chr12 63843927 63844078 + 0 NA promoter-TSS (NM_001346201) promoter-TSS (NM_001346201) -751 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 23301 chr5 138213445 138213549 + 0 NA promoter-TSS (NM_004661) promoter-TSS (NM_004661) -154 NM_004661 8697 Hs.73625 NM_004661 ENSG00000094880 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 4781 chr11 8682577 8682729 + 0 NA 5' UTR (NM_000990, exon 1 of 5) 5' UTR (NM_000990, exon 1 of 5) 205 NM_000990 6157 Hs.523463 NM_000990 ENSG00000166441 RPL27A L27A ribosomal protein L27a protein-coding 4716 chr11 4045135 4045137 + 0 NA intron (NM_001277961, intron 3 of 11) intron (NM_001277961, intron 3 of 11) -49549 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 12408 chr17 37609397 37609504 + 0 NA promoter-TSS (NM_001163544) promoter-TSS (NM_001163544) -12 NM_001163545 11276 Hs.594647 NM_007247 ENSG00000275066 SYNRG AP1GBP1|SYNG synergin gamma protein-coding 7520 chr12 100706187 100706216 + 0 NA Intergenic Intergenic -88395 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 23918 chr6 3900245 3900422 + 0 NA Intergenic LTR18B|LTR|ERVL 50967 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 1166 chr1 81186428 81186532 + 0 NA Intergenic Intergenic 371222 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 25299 chr6 148263136 148263278 + 0 NA Intergenic Intergenic -9069 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 8381 chr13 76890242 76890346 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger -3889 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 25049 chr6 116268585 116268718 + 0 NA intron (NM_001322940, intron 2 of 6) MER20B|DNA|hAT-Charlie -11412 NR_136523 29940 Hs.458358 NM_013352 ENSG00000111817 DSE DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 18496 chr21 33915824 33915944 + 0 NA promoter-TSS (NM_001697) promoter-TSS (NM_001697) -30 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5O ATPO|HMC08D05|OSCP ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding 15541 chr2 53404154 53404282 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -363565 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 27443 chr8 17738321 17738345 + 0 NA intron (NM_001001924, intron 3 of 14) intron (NM_001001924, intron 3 of 14) -15758 NM_001166393 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 5637 chr11 73192502 73192606 + 0 NA Intergenic Intergenic -25744 NM_176072 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 1378 chr1 98054243 98054291 + 0 NA Intergenic CpG -4574 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 7420 chr12 92144767 92144871 + 0 NA intron (NM_001731, intron 1 of 1) intron (NM_001731, intron 1 of 1) 1078 NM_001731 694 Hs.255935 NM_001731 ENSG00000133639 BTG1 APRO2 BTG anti-proliferation factor 1 protein-coding 24387 chr6 31958995 31959198 + 0 NA promoter-TSS (NM_002904).4 promoter-TSS (NM_002904).4 -9 NM_002904 7936 Hs.423935 NM_002904 ENSG00000204356 NELFE D6S45|NELF-E|RD|RDBP|RDP negative elongation factor complex member E protein-coding 1054 chr1 66262341 66262445 + 0 NA intron (NM_001037340, intron 4 of 14) MIRc|SINE|MIR -69715 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 27292 chr7 158508479 158508583 + 0 NA intron (NM_130843, intron 1 of 21) intron (NM_130843, intron 1 of 21) 24282 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 21347 chr4 49137175 49137325 + 0 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 150608 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 22206 chr5 10250157 10250326 + 0 NA promoter-TSS (NM_001306155) promoter-TSS (NM_001306155) -296 NM_001306155 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 23486 chr5 149485830 149485922 + 0 NA Intergenic Intergenic 55230 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 3797 chr10 67884539 67884600 + 0 NA promoter-TSS (NM_012238) promoter-TSS (NM_012238) -100 NM_012238 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 621 chr1 36109157 36109261 + 0 NA intron (NM_005202, intron 2 of 3) intron (NM_005202, intron 2 of 3) 15875 NM_001294347 1296 Hs.353001 NM_005202 ENSG00000171812 COL8A2 FECD|FECD1|PPCD|PPCD2 collagen type VIII alpha 2 chain protein-coding 24029 chr6 10759375 10759541 + 0 NA 3' UTR (NM_001286489, exon 5 of 5) 3' UTR (NM_001286489, exon 5 of 5) 11699 NR_104454 81853 Hs.95600 NM_030969 ENSG00000137210 TMEM14B - transmembrane protein 14B protein-coding 7537 chr12 101936305 101936497 + 0 NA Intergenic Intergenic 59074 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 14575 chr19 45692445 45692599 + 0 NA promoter-TSS (NM_001163377) promoter-TSS (NM_001163377) 39 NM_017659 54814 Hs.631556 NM_017659 ENSG00000011478 QPCTL gQC glutaminyl-peptide cyclotransferase like protein-coding 16358 chr2 134818365 134818470 + 0 NA Intergenic MER65B|LTR|ERV1 -20199 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 12325 chr17 32206113 32206217 + 0 NA intron (NR_110083, intron 16 of 20) intron (NR_110083, intron 16 of 20) -54594 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 10397 chr15 71447447 71447557 + 0 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -99700 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 9511 chr14 88562966 88563075 + 0 NA promoter-TSS (NM_001326316) promoter-TSS (NM_001326316) 111 NM_001326304 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 25551 chr7 2266985 2267089 + 0 NA intron (NM_013321, intron 5 of 10) MIRb|SINE|MIR -9460 NR_106895 102465503 NR_106895 ENSG00000106266 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 25258 chr6 143427358 143427427 + 0 NA 3' UTR (NM_001286259, exon 6 of 6) 3' UTR (NM_001286259, exon 6 of 6) 15285 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase, tRNA specific 2 protein-coding 21782 chr4 127698901 127699005 + 0 NA intron (NM_015693, intron 8 of 15) intron (NM_015693, intron 8 of 15) -31425 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 19776 chr3 101724841 101724876 + 0 NA intron (NM_024548, intron 1 of 10) CpG 265 NM_001303401 79598 Hs.444135 NM_024548 ENSG00000182504 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97 protein-coding 12518 chr17 42423360 42423464 + 0 NA promoter-TSS (NM_012232) promoter-TSS (NM_012232) -92 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 PTRF CAVIN|CAVIN1|CGL4|FKSG13|cavin-1 polymerase I and transcript release factor protein-coding 7579 chr12 105860812 105860950 + 0 NA Intergenic Intergenic 154107 NR_110111 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 3052 chr1 238139914 238140018 + 0 NA Intergenic LTR8B|LTR|ERV1 -249044 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 26141 chr7 42932229 42932371 + 0 NA promoter-TSS (NM_002787) promoter-TSS (NM_002787) -40 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 2438 chr1 203663399 203663503 + 0 NA intron (NM_001684, intron 1 of 20) (AC)n|Simple_repeat|Simple_repeat 36664 NM_001684 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 28846 chr8 144755207 144755311 + 0 NA intron (NM_138367, intron 1 of 4) CpG 326 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 3246 chr10 6202809 6202957 + 0 NA promoter-TSS (NM_001323017) promoter-TSS (NM_001323017) 6 NM_001323017 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 29991 chr9 116838324 116838428 + 0 NA intron (NM_014010, intron 10 of 21) AluSx|SINE|Alu 151074 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 29263 chr9 75169743 75169751 + 0 NA Intergenic LTR23|LTR|ERV1 81265 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 28324 chr8 101080707 101080820 + 0 NA Intergenic CpG 28709 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 25447 chr6 161138292 161138396 + 0 NA intron (NM_020133, intron 8 of 8) intron (NM_020133, intron 8 of 8) 23638 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 26167 chr7 44200865 44201004 + 0 NA promoter-TSS (NM_006555) promoter-TSS (NM_006555) -45 NM_006555 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog (S. cerevisiae) protein-coding 5899 chr11 95134577 95134770 + 0 NA Intergenic Intergenic -15866 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 9663 chr14 100031660 100031764 + 0 NA intron (NM_001330221, intron 1 of 13) intron (NM_001330221, intron 1 of 13) -33702 NM_016337 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 24403 chr6 32971794 32971914 + 0 NA 5' UTR (NM_001291986, exon 2 of 14) 5' UTR (NM_001291986, exon 2 of 14) 259 NM_001199455 6046 Hs.75243 NM_005104 ENSG00000204256 BRD2 D6S113E|FSH|FSRG1|NAT|O27.1.1|RING3|RNF3 bromodomain containing 2 protein-coding 13273 chr18 11981041 11981192 + 0 NA promoter-TSS (NM_014214) promoter-TSS (NM_014214) -312 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 1311 chr1 92804939 92805043 + 0 NA Intergenic Intergenic -12587 NM_001308248 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 21595 chr4 94548708 94548821 + 0 NA intron (NM_001011513, intron 3 of 12) intron (NM_001011513, intron 3 of 12) 96907 NM_001011515 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 14783 chr19 54209951 54210055 + 0 NA Intergenic Intergenic 9109 NM_001321702 6203 Hs.467284 NM_001013 ENSG00000170889 RPS9 S9 ribosomal protein S9 protein-coding 25051 chr6 116371716 116371815 + 0 NA intron (NM_013352, intron 1 of 5) intron (NM_013352, intron 1 of 5) 895 NM_001322941 29940 Hs.458358 NM_013352 ENSG00000111817 DSE DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 24554 chr6 42217921 42218025 + 0 NA promoter-TSS (NM_018141) promoter-TSS (NM_018141) -78 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 18487 chr21 33428779 33428883 + 0 NA intron (NM_001329128, intron 5 of 7) intron (NM_001329128, intron 5 of 7) 25935 NM_005534 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 29632 chr9 96778111 96778189 + 0 NA promoter-TSS (NM_001314059) promoter-TSS (NM_001314059) -21 NM_001314060 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 11081 chr16 19086673 19086828 + 0 NA Intergenic CpG 18833 NM_001190983 10229 Hs.157113 NM_016138 ENSG00000167186 COQ7 CAT5|CLK-1|CLK1|COQ10D8 coenzyme Q7, hydroxylase protein-coding 8229 chr13 46797075 46797257 + 0 NA promoter-TSS (NM_001984) promoter-TSS (NM_001984) 66 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 25268 chr6 144284742 144284846 + 0 NA Intergenic CpG -6943 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 21138 chr4 5365839 5365981 + 0 NA intron (NM_001345969, intron 4 of 10) intron (NM_001345969, intron 4 of 10) -158659 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 15993 chr2 97996230 97996267 + 0 NA promoter-TSS (NM_015348) promoter-TSS (NM_015348) -357 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 14712 chr19 50025618 50025722 + 0 NA promoter-TSS (NM_001308420) promoter-TSS (NM_001308420) -122 NM_001025778 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - vaccinia related kinase 3 protein-coding 5736 chr11 82495080 82495228 + 0 NA Intergenic L1PB2|LINE|L1 -91241 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 27578 chr8 26352243 26352347 + 0 NA intron (NM_002717, intron 3 of 9) intron (NM_002717, intron 3 of 9) 30658 NR_144550 157489 Hs.586388 NR_144550 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 24442 chr6 35259439 35259553 + 0 NA promoter-TSS (NM_001292032) promoter-TSS (NM_001292032) -218 NM_003427 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 701 chr1 40691576 40691730 + 0 NA promoter-TSS (NM_001142590) promoter-TSS (NM_001142590) 83 NM_001142589 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 16955 chr2 204452526 204452630 + 0 NA Intergenic Intergenic -93215 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 13672 chr18 60232723 60232827 + 0 NA Intergenic Intergenic 139993 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R - melanocortin 4 receptor protein-coding 11366 chr16 53781419 53781523 + 0 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 77508 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO, alpha-ketoglutarate dependent dioxygenase protein-coding 22349 chr5 33642220 33642243 + 0 NA intron (NM_001324512, intron 10 of 21) Charlie10a|DNA|hAT-Charlie 201455 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 13799 chr18 76740517 76740621 + 0 NA Intergenic Intergenic 50540 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 2539 chr1 208207731 208207835 + 0 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 36537 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 9359 chr14 73785973 73786121 + 0 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) 1211 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 28139 chr8 86176928 86177032 + 0 NA Intergenic Intergenic 53395 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 3639 chr10 45672614 45672728 + 0 NA promoter-TSS (NM_001282905) promoter-TSS (NM_001282905) 61 NM_174890 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 18707 chr22 24952668 24952717 + 0 NA Intergenic CpG -13345 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 11192 chr16 29595467 29595611 + 0 NA promoter-TSS (NR_135305) promoter-TSS (NR_135305) -447 NR_135305 440354 Hs.552700 NR_002473 SMG1P2 - SMG1P2, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 2 pseudo 2779 chr1 223081289 223081377 + 0 NA Intergenic Intergenic 61949 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 30255 chr9 130187300 130187416 + 0 NA intron (NM_014286, intron 1 of 7) intron (NM_014286, intron 1 of 7) -13235 NM_001128826 23413 Hs.642946 NM_014286 ENSG00000107130 NCS1 FLUP|FREQ neuronal calcium sensor 1 protein-coding 29025 chr9 32526545 32526695 + 0 NA promoter-TSS (NM_014314) promoter-TSS (NM_014314) -296 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 17087 chr2 216682508 216682612 + 0 NA intron (NM_000599, intron 1 of 3) L3b|LINE|CR1 12989 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 29942 chr9 114908291 114908328 + 0 NA intron (NM_001252290, intron 2 of 4) intron (NM_001252290, intron 2 of 4) 22286 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 5573 chr11 68013230 68013334 + 0 NA intron (NM_001030010, intron 1 of 8) intron (NM_001030010, intron 1 of 8) 2977 NM_001290058 221 Hs.523841 NM_000694 ENSG00000006534 ALDH3B1 ALDH4|ALDH7 aldehyde dehydrogenase 3 family member B1 protein-coding 19752 chr3 99817813 99817917 + 0 NA promoter-TSS (NM_032359) promoter-TSS (NM_032359) 31 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog (yeast) protein-coding 26568 chr7 90403857 90404000 + 0 NA intron (NM_012129, intron 1 of 2) intron (NM_012129, intron 1 of 2) 594 NM_012129 9069 Hs.731917 NM_012129 ENSG00000157224 CLDN12 - claudin 12 protein-coding 3877 chr10 72626069 72626176 + 0 NA promoter-TSS (NM_001195518) promoter-TSS (NM_001195518) 69 NM_006077 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS mitochondrial calcium uptake 1 protein-coding 30663 chrX 47129215 47129369 + 0 NA Intergenic Intergenic 15918 NM_019056 54539 Hs.521969 NM_019056 ENSG00000147123 NDUFB11 CI-ESSS|ESSS|NP17.3|Np15|P17.3 NADH:ubiquinone oxidoreductase subunit B11 protein-coding 13011 chr17 75549443 75549590 + 0 NA intron (NM_004524, intron 2 of 24) intron (NM_004524, intron 2 of 24) 23814 NM_001031803 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL2, scribble cell polarity complex component protein-coding 2491 chr1 205749445 205749548 + 0 NA intron (NM_022731, intron 1 of 6) CpG 748 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 30591 chrX 29024931 29025035 + 0 NA intron (NM_014271, intron 2 of 10) L1MB8|LINE|L1 437419 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL1R8|IL1RAPL|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 29147 chr9 69885603 69885666 + 0 NA intron (NR_131756, intron 4 of 5) L1MEd|LINE|L1 64829 NM_001308084 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 16390 chr2 138501675 138501835 + 0 NA promoter-TSS (NM_001001664) promoter-TSS (NM_001001664) -25 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 6971 chr12 49323053 49323071 + 0 NA promoter-TSS (NM_001100620) promoter-TSS (NM_001100620) -126 NM_001278324 10024 Hs.524399 NM_005480 ENSG00000135451 TROAP TASTIN trophinin associated protein protein-coding 21197 chr4 15001990 15002094 + 0 NA promoter-TSS (NM_182646) promoter-TSS (NM_182646) 3 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-AS1 - CPEB2 antisense RNA 1 (head to head) ncRNA 10314 chr15 66670987 66671091 + 0 NA intron (NR_110372, intron 3 of 4) L2b|LINE|L2 -31297 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 12385 chr17 36464003 36464145 + 0 NA Intergenic CpG -6545 NM_001291463 102724862 Hs.454716 NM_001291463 ENSG00000274933 TBC1D3I - TBC1 domain family member 3I protein-coding 14768 chr19 53879380 53879538 + 0 NA Intergenic CpG -2725 NM_001316329 5582 Hs.631564 NM_002739 ENSG00000126583 PRKCG PKC-gamma|PKCC|PKCG|SCA14 protein kinase C gamma protein-coding 28281 chr8 98944394 98944432 + 0 NA promoter-TSS (NM_001142462) promoter-TSS (NM_001142462) 10 NM_053001 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 27643 chr8 29971894 29972025 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -14611 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 3105 chr1 244164109 244164259 + 0 NA Intergenic Intergenic 110979 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 29419 chr9 85119140 85119244 + 0 NA Intergenic Intergenic 448815 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 19054 chr22 50305960 50306056 + 0 NA intron (NM_012401, intron 1 of 36) intron (NM_012401, intron 1 of 36) 1564 NM_012401 23654 Hs.3989 NM_012401 ENSG00000196576 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 9793 chr15 25438969 25439092 + 0 NA promoter-TSS (NM_000462) promoter-TSS (NM_000462) -2 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 1775 chr1 153958605 153958747 + 0 NA promoter-TSS (NM_181715) promoter-TSS (NM_181715) -20 NM_181715 200186 Hs.406392 NM_181715 ENSG00000160741 CRTC2 TORC-2|TORC2 CREB regulated transcription coactivator 2 protein-coding 19655 chr3 71057747 71057893 + 0 NA intron (NM_032682, intron 7 of 20) intron (NM_032682, intron 7 of 20) 7103 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 22499 chr5 51651994 51652098 + 0 NA Intergenic Intergenic -268714 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 17290 chr2 232781990 232782036 + 0 NA intron (NM_001103147, intron 10 of 30) MIRc|SINE|MIR -5448 NM_001172416 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 15007 chr2 11155457 11155530 + 0 NA non-coding (NR_104231, exon 1 of 8) non-coding (NR_104231, exon 1 of 8) 121 NM_001282712 130814 Hs.274415 NM_152391 ENSG00000162976 PQLC3 C2orf22 PQ loop repeat containing 3 protein-coding 12295 chr17 29779405 29779532 + 0 NA intron (NM_001282130, intron 2 of 7) intron (NM_001282130, intron 2 of 7) -18036 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 2530 chr1 207848334 207848467 + 0 NA Intergenic Intergenic -25697 NR_135298 100128537 Hs.445414 NR_135298 C1orf132 - chromosome 1 open reading frame 132 ncRNA 15968 chr2 96266055 96266225 + 0 NA promoter-TSS (NM_001193304) promoter-TSS (NM_001193304) -6 NM_004804 9391 Hs.12109 NM_004804 ENSG00000144021 CIAO1 CIA1|WDR39 cytosolic iron-sulfur assembly component 1 protein-coding 24747 chr6 57172534 57172537 + 0 NA promoter-TSS (NR_110742) promoter-TSS (NR_110742) 229 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 1512 chr1 111619622 111619751 + 0 NA promoter-TSS (NM_002884) promoter-TSS (NM_002884) -97 NM_001010935 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 25478 chr6 166956572 166956676 + 0 NA promoter-TSS (NM_003730) promoter-TSS (NM_003730) -35 NM_003730 8635 Hs.529989 NM_003730 ENSG00000026297 RNASET2 RNASE6PL|bA514O12.3 ribonuclease T2 protein-coding 14336 chr19 31214300 31214404 + 0 NA intron (NR_138036, intron 2 of 4) intron (NR_138036, intron 2 of 4) 135173 NR_138034 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 10678 chr15 89898788 89898915 + 0 NA 3' UTR (NM_001282380, exon 6 of 6) 3' UTR (NM_001282380, exon 6 of 6) -4466 NR_037582 10239 Hs.632161 NM_005829 ENSG00000157823 AP3S2 AP3S3|sigma3b adaptor related protein complex 3 sigma 2 subunit protein-coding 2946 chr1 231773186 231773290 + 0 NA intron (NM_001164546, intron 6 of 6) intron (NM_001164546, intron 6 of 6) 45279 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 (non-protein coding) ncRNA 328 chr1 21788299 21788445 + 0 NA Intergenic AluSp|SINE|Alu -5177 NM_001330394 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 16361 chr2 135052231 135052300 + 0 NA promoter-TSS (NM_001172435) promoter-TSS (NM_001172435) 0 NM_012233 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 6682 chr12 15279418 15279487 + 0 NA Intergenic Intergenic -42805 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase, receptor type O protein-coding 17418 chr20 325313 325438 + 0 NA promoter-TSS (NR_109990) promoter-TSS (NR_109990) -123 NR_109990 100507459 Hs.659689 NR_109990 NRSN2-AS1 - NRSN2 antisense RNA 1 ncRNA 26268 chr7 50805847 50805951 + 0 NA Intergenic Intergenic -12437 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 1223 chr1 85708580 85708684 + 0 NA promoter-TSS (NM_001170670) promoter-TSS (NM_001170670) -199 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 16206 chr2 119208877 119208981 + 0 NA Intergenic Intergenic -14879 NM_001008410 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 18700 chr22 24555386 24555483 + 0 NA promoter-TSS (NM_031444) promoter-TSS (NM_031444) -127 NM_001284255 83606 Hs.9850 NM_031444 ENSG00000138867 GUCD1 C22orf13|LLN4 guanylyl cyclase domain containing 1 protein-coding 4271 chr10 103193288 103193451 + 0 NA promoter-TSS (NM_001134373) promoter-TSS (NM_001134373) -63 NM_001134373 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 28372 chr8 103980598 103980702 + 0 NA intron (NM_014677, intron 13 of 21) L1MA2|LINE|L1 161462 NM_001282881 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 13657 chr18 59512138 59512308 + 0 NA intron (NM_133459, intron 2 of 10) LTR1A2|LTR|ERV1 -152947 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 7711 chr12 117350242 117350346 + 0 NA intron (NM_001204218, intron 1 of 29) intron (NM_001204218, intron 1 of 29) 11508 NM_000620 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 8425 chr13 82627436 82627510 + 0 NA Intergenic Intergenic 1254920 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 630 chr1 36306964 36307095 + 0 NA promoter-TSS (NM_024676) promoter-TSS (NM_024676) -78 NM_024676 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 5001 chr11 20112609 20112615 + 0 NA intron (NM_001111019, intron 26 of 27) intron (NM_001111019, intron 26 of 27) 47712 NM_001029865 120237 Hs.558604 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 19759 chr3 100269800 100269835 + 0 NA intron (NM_001199198, intron 1 of 18) Charlie11|DNA|hAT-Charlie 9000 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1 TBC1 domain family member 23 protein-coding 11132 chr16 23148712 23148866 + 0 NA exon (NM_020718, exon 1 of 16) exon (NM_020718, exon 1 of 16) 481 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 28735 chr8 133858416 133858437 + 0 NA Intergenic Intergenic -28070 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 9605 chr14 94610797 94610901 + 0 NA Intergenic MIRb|SINE|MIR -1528 NM_001085 12 Hs.534293 NM_001085 ENSG00000196136 SERPINA3 AACT|ACT|GIG24|GIG25 serpin family A member 3 protein-coding 30095 chr9 124818762 124818909 + 0 NA Intergenic Intergenic 17961 NM_001282715 169611 Hs.357004 NM_182487 ENSG00000185585 OLFML2A PRO34319 olfactomedin like 2A protein-coding 25581 chr7 4620505 4620578 + 0 NA Intergenic Intergenic -61758 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 3263 chr10 7257393 7257497 + 0 NA intron (NM_001029880, intron 7 of 20) intron (NM_001029880, intron 7 of 20) -70661 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 30024 chr9 120876525 120876620 + 0 NA intron (NM_001286840, intron 1 of 14) CpG 756 NM_001009936 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding 21918 chr4 153249216 153249387 + 0 NA intron (NM_001302693, intron 1 of 2) CpG -8058 NM_001302694 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 23367 chr5 141521381 141521525 + 0 NA intron (NM_001314007, intron 27 of 28) intron (NM_001314007, intron 27 of 28) 32212 NM_018929 56097 Hs.368160 NM_018929 ENSG00000240764 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 9833 chr15 32850356 32850488 + 0 NA intron (NM_001277313, intron 17 of 20) intron (NM_001277313, intron 17 of 20) -131557 NR_109767 100131315 Hs.610545 NR_109767 ENSG00000259721 LOC100131315 - uncharacterized LOC100131315 ncRNA 14235 chr19 17260937 17261089 + 0 NA intron (NM_031941, intron 4 of 12) L2|LINE|L2 3722 NM_031941 83878 Hs.512773 NM_031941 ENSG00000130307 USHBP1 AIEBP|MCC2 USH1 protein network component harmonin binding protein 1 protein-coding 21604 chr4 98430763 98430867 + 0 NA intron (NM_021159, intron 12 of 14) intron (NM_021159, intron 12 of 14) 169439 NM_001100428 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 11696 chr16 79678227 79678342 + 0 NA Intergenic L1ME2z|LINE|L1 -77559 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 4108 chr10 95229778 95229906 + 0 NA TTS (NM_207321) TTS (NM_207321) 35642 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium-chain family member 6 protein-coding 28585 chr8 124888870 124888974 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -53086 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 28107 chr8 81890559 81890663 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -48325 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 22993 chr5 108728281 108728436 + 0 NA promoter-TSS (NR_046368) promoter-TSS (NR_046368) -97 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 27448 chr8 17895415 17895519 + 0 NA promoter-TSS (NM_147203) promoter-TSS (NM_147203) -63 NM_201553 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 16896 chr2 199911545 199911649 + 0 NA exon (NM_153689, exon 1 of 2) exon (NM_153689, exon 1 of 2) 341 NM_153689 205327 Hs.154494 NM_153689 ENSG00000178074 C2orf69 - chromosome 2 open reading frame 69 protein-coding 12349 chr17 34371120 34371204 + 0 NA Intergenic Intergenic -7929 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 29295 chr9 76519250 76519354 + 0 NA Intergenic Intergenic 18669 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1, core 2 protein-coding 14126 chr19 11766951 11767096 + 0 NA promoter-TSS (NM_152355) promoter-TSS (NM_152355) 23 NM_152355 126068 Hs.675132 NM_152355 ENSG00000197044 ZNF441 - zinc finger protein 441 protein-coding 23456 chr5 147892884 147892988 + 0 NA 3' UTR (NM_206966, exon 4 of 4) 3' UTR (NM_206966, exon 4 of 4) 13602 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 28074 chr8 80029732 80029740 + 0 NA intron (NM_014018, intron 1 of 2) intron (NM_014018, intron 1 of 2) 535 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 23799 chr5 178107076 178107156 + 0 NA Intergenic Intergenic -6439 NM_015111 23138 Hs.101761 NM_015111 ENSG00000145911 N4BP3 LZTS4 NEDD4 binding protein 3 protein-coding 20052 chr3 124429185 124429258 + 0 NA intron (NM_001024660, intron 15 of 59) intron (NM_001024660, intron 15 of 59) 54889 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 28991 chr9 22124724 22124828 + 0 NA Intergenic Intergenic -115463 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 16508 chr2 157692850 157692954 + 0 NA Intergenic Intergenic -64015 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 15774 chr2 70871632 70871782 + 0 NA Intergenic CpG -16164 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 26459 chr7 76510270 76510331 + 0 NA promoter-TSS (NM_030570) promoter-TSS (NM_030570) -42 NM_001347684 105375355 Hs.488861 NM_030570 ENSG00000243566 UPK3B P35|UP3B|UPIIIB uroplakin 3B protein-coding 1687 chr1 150579633 150579782 + 0 NA promoter-TSS (NM_001197320) promoter-TSS (NM_001197320) 31 NM_182763 4170 Hs.632486 NM_021960 ENSG00000143384 MCL1 BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT BCL2 family apoptosis regulator protein-coding 27730 chr8 41151715 41151861 + 0 NA Intergenic Intergenic 119355 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 7404 chr12 89960229 89960346 + 0 NA Intergenic Intergenic 12594 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LOC105369891 - uncharacterized LOC105369891 ncRNA 22843 chr5 87781237 87781341 + 0 NA Intergenic Intergenic -368256 NM_001239 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 8494 chr13 99046431 99046463 + 0 NA intron (NM_001130049, intron 1 of 32) intron (NM_001130049, intron 1 of 32) 39959 NM_001130049 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 1188 chr1 84604008 84604140 + 0 NA intron (NR_125761, intron 2 of 2) LTR25-int|LTR|ERV1 16957 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 3142 chr1 246794922 246795026 + 0 NA Intergenic Intergenic 5357 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 7455 chr12 94677969 94678119 + 0 NA Intergenic Intergenic -27482 NM_020698 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 18169 chr20 49859967 49860128 + 0 NA intron (NR_048539, intron 7 of 13) intron (NR_048539, intron 7 of 13) 47334 NM_001260491 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 28975 chr9 20622472 20622660 + 0 NA promoter-TSS (NM_004529) promoter-TSS (NM_004529) -23 NM_004529 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3, super elongation complex subunit protein-coding 31119 chrX 141406073 141406177 + 0 NA Intergenic Intergenic -96724 NR_037183 619455 Hs.590784 NR_037183 ENSG00000277215 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 ncRNA 19153 chr3 10366953 10367057 + 0 NA intron (NM_001330611, intron 9 of 21) intron (NM_001330611, intron 9 of 21) 27557 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 4364 chr10 112183729 112183893 + 0 NA promoter-TSS (NM_001244949) promoter-TSS (NM_001244949) -32 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 28652 chr8 128035265 128035369 + 0 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) -13835 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 7293 chr12 76953134 76953169 + 0 NA Intergenic Intergenic -74111 NM_001300965 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 20771 chr3 182182763 182182867 + 0 NA Intergenic Intergenic 230451 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 29244 chr9 73643438 73643593 + 0 NA Intergenic Intergenic 491784 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 14405 chr19 37907068 37907172 + 0 NA promoter-TSS (NM_015073) promoter-TSS (NM_015073) -101 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 30612 chrX 38061519 38061621 + 0 NA intron (NM_001163335, intron 4 of 17) intron (NM_001163335, intron 4 of 17) 28036 NM_001163334 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 26182 chr7 44848245 44848398 + 0 NA promoter-TSS (NM_138635) promoter-TSS (NM_138635) -195 NM_201516 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 14532 chr19 44776439 44776606 + 0 NA Intergenic Intergenic -1347 NM_001130852 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 18462 chr21 30164892 30164910 + 0 NA Intergenic Intergenic 1752 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 11274 chr16 33339801 33339905 + 0 NA Intergenic (TGGCTTGGC)n|Simple_repeat|Simple_repeat -21024 NM_016212 24150 Hs.592038 NM_015369 ENSG00000183632 TP53TG3 P53TG3|TP53TG3A|TP53TG3E|TP53TG3F TP53 target 3 protein-coding 15472 chr2 45675546 45675669 + 0 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 23703 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 13031 chr17 76072504 76072633 + 0 NA promoter-TSS (NM_001260502) promoter-TSS (NM_001260502) -42 NR_048541 6730 Hs.514495 NM_014230 ENSG00000167881 SRP68 - signal recognition particle 68 protein-coding 29003 chr9 26892741 26892895 + 0 NA promoter-TSS (NM_001167575) promoter-TSS (NM_001167575) 10 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 4631 chr10 132223219 132223302 + 0 NA intron (NM_001318878, intron 8 of 11) intron (NM_001318878, intron 8 of 11) 25848 NR_134911 282974 Hs.469002 NM_173575 ENSG00000165752 STK32C PKE|YANK3 serine/threonine kinase 32C protein-coding 23760 chr5 175282910 175283014 + 0 NA Intergenic Intergenic 161198 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 23406 chr5 142721052 142721156 + 0 NA Intergenic Intergenic -23034 NM_001144935 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 16314 chr2 130328913 130329017 + 0 NA Intergenic LTR78|LTR|ERV1 13143 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 3285 chr10 11875960 11876114 + 0 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 18673 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 11904 chr17 1981614 1981801 + 0 NA intron (NM_178568, intron 1 of 1) intron (NM_178568, intron 1 of 1) -36009 NR_135642 105371485 Hs.655867 NR_135642 ENSG00000228133 LOC105371485 - uncharacterized LOC105371485 ncRNA 18613 chr22 17706647 17706777 + 0 NA promoter-TSS (NM_001270733) promoter-TSS (NM_001270733) 54 NM_001270733 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 16216 chr2 119544180 119544229 + 0 NA promoter-TSS (NR_073133) promoter-TSS (NR_073133) -228 NR_073132 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 25498 chr6 169702044 169702221 + 0 NA promoter-TSS (NM_001202550) promoter-TSS (NM_001202550) 20 NM_001317342 387263 Hs.591375 NM_001029863 ENSG00000185127 C6orf120 - chromosome 6 open reading frame 120 protein-coding 18286 chr20 56257802 56257906 + 0 NA Intergenic Intergenic 9122 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 28433 chr8 110334474 110334513 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -358646 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 22092 chr4 184474678 184474781 + 0 NA promoter-TSS (NM_002199) promoter-TSS (NM_002199) -157 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 8484 chr13 98576202 98576306 + 0 NA intron (NM_001032296, intron 1 of 10) CpG 897 NM_001286649 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 2717 chr1 219173812 219173940 + 0 NA promoter-TSS (NR_038845) promoter-TSS (NR_038845) 45 NM_001300769 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 20318 chr3 142888988 142888991 + 0 NA 5' UTR (NM_013363, exon 1 of 9) 5' UTR (NM_013363, exon 1 of 9) 214 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 6825 chr12 31246537 31246658 + 0 NA Intergenic HERV16-int|LTR|ERVL -77719 NR_026806 79857 Hs.534485 NM_024799 ENSG00000177340 FLJ13224 - uncharacterized LOC79857 ncRNA 13189 chr17_GL000205v2_random 88955 89108 + 0 NA Intergenic Intergenic -31065 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 30764 chrX 56233881 56233985 + 0 NA intron (NM_001324099, intron 1 of 3) intron (NM_001324099, intron 1 of 3) 775 NM_001324100 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 28886 chr9 4137304 4137408 + 0 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 14827 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 19762 chr3 100401052 100401203 + 0 NA promoter-TSS (NM_001085451) promoter-TSS (NM_001085451) -66 NM_001085451 348801 Hs.591294 NM_001085451 ENSG00000206535 LNP1 NP3 leukemia NUP98 fusion partner 1 protein-coding 30598 chrX 30892729 30892833 + 0 NA Intergenic LTR78B|LTR|ERV1 -3387 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding 28518 chr8 119855402 119855506 + 0 NA intron (NM_024094, intron 1 of 8) intron (NM_024094, intron 1 of 8) 476 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 771 chr1 43885315 43885456 + 0 NA intron (NR_073018, intron 6 of 10) intron (NR_073018, intron 6 of 10) 46763 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 29451 chr9 86946561 86946665 + 0 NA exon (NM_002048, exon 1 of 1) exon (NM_002048, exon 1 of 1) 576 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 17800 chr20 24339241 24339345 + 0 NA Intergenic L2a|LINE|L2 -129906 NM_024893 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 20530 chr3 159621056 159621160 + 0 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 147504 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 22215 chr5 10563727 10563782 + 0 NA promoter-TSS (NM_001164440) promoter-TSS (NM_001164440) -569 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 20479 chr3 156630555 156630659 + 0 NA Intergenic Intergenic -43809 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 29207 chr9 72275044 72275148 + 0 NA Intergenic Intergenic -30340 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 20533 chr3 159732698 159732773 + 0 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 35877 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 19785 chr3 102156515 102156619 + 0 NA Intergenic Intergenic -7138 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 16551 chr2 160695800 160695869 + 0 NA Intergenic Intergenic -202027 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 8706 chr14 22807671 22807775 + 0 NA intron (NM_001126106, intron 3 of 10) L2c|LINE|L2 8169 NR_040448 9056 Hs.513147 NM_003982 ENSG00000155465 SLC7A7 LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1 solute carrier family 7 member 7 protein-coding 24719 chr6 53984329 53984433 + 0 NA intron (NR_125842, intron 2 of 3) intron (NR_125842, intron 2 of 3) -14509 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 6495 chr12 6183104 6183226 + 0 NA Intergenic MIRc|SINE|MIR -16542 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 21652 chr4 103484590 103484694 + 0 NA Intergenic L1PA7|LINE|L1 59600 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LOC101929448 - uncharacterized LOC101929448 ncRNA 30111 chr9 125521802 125521906 + 0 NA intron (NM_001006618, intron 7 of 7) intron (NM_001006618, intron 7 of 7) 185380 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 30618 chrX 39688871 39688910 + 0 NA Intergenic CpG 27674 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 29341 chr9 79489688 79489829 + 0 NA Intergenic L3|LINE|CR1 -82015 NM_001282749 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 16989 chr2 207334691 207334795 + 0 NA Intergenic Intergenic -65319 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 6558 chr12 7933331 7933435 + 0 NA intron (NM_006931, intron 2 of 9) intron (NM_006931, intron 2 of 9) 2913 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 1586 chr1 117060109 117060247 + 0 NA promoter-TSS (NM_003594) promoter-TSS (NM_003594) -149 NM_003594 8458 Hs.32333 NM_003594 ENSG00000116830 TTF2 HuF2|ZGRF6 transcription termination factor 2 protein-coding 14365 chr19 35163129 35163233 + 0 NA intron (NM_001164605, intron 5 of 8) intron (NM_001164605, intron 5 of 8) 8239 NM_001164605 53827 Hs.333418 NM_014164 ENSG00000089327 FXYD5 DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 7918 chr12 132887655 132887759 + 0 NA promoter-TSS (NR_110919) promoter-TSS (NR_110919) -89 NM_001161346 55743 Hs.720197 NM_018223 ENSG00000072609 CHFR RNF116|RNF196 checkpoint with forkhead and ring finger domains protein-coding 1456 chr1 108746651 108746755 + 0 NA promoter-TSS (NM_007269) promoter-TSS (NM_007269) 40 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 21400 chr4 57078882 57078986 + 0 NA intron (NM_001253835, intron 1 of 3) intron (NM_001253835, intron 1 of 3) -30828 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 18723 chr22 26493716 26493873 + 0 NA intron (NM_012143, intron 14 of 14) intron (NM_012143, intron 14 of 14) 9910 NM_001013694 402055 Hs.709914 NM_001013694 ENSG00000100104 SRRD HC/HCC|SRR1L SRR1 domain containing protein-coding 30982 chrX 114152286 114152390 + 0 NA Intergenic Intergenic -214120 NR_131204 105463123 Hs.550218 NR_131204 ENSG00000241743 XACT - X active specific transcript (non-protein coding) ncRNA 28049 chr8 75407531 75407615 + 0 NA promoter-TSS (NM_001330561) promoter-TSS (NM_001330561) -97 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 27716 chr8 39032295 39032399 + 0 NA intron (NM_003816, intron 11 of 21) L1P2|LINE|L1 35361 NM_003816 8754 Hs.591852 NM_003816 ENSG00000168615 ADAM9 CORD9|MCMP|MDC9|Mltng ADAM metallopeptidase domain 9 protein-coding 19673 chr3 75435182 75435314 + 0 NA promoter-TSS (NR_024241) promoter-TSS (NR_024241) -133 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86 member D, pseudogene pseudo 14902 chr2 740100 740249 + 0 NA Intergenic Intergenic -62735 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 21127 chr4 3106734 3106886 + 0 NA intron (NM_002111, intron 5 of 66) intron (NM_002111, intron 5 of 66) 32129 NM_002111 3064 Hs.518450 NM_002111 ENSG00000197386 HTT HD|IT15 huntingtin protein-coding 3561 chr10 34254654 34254758 + 0 NA intron (NM_001184791, intron 18 of 20) L2b|LINE|L2 -482026 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 24462 chr6 36442836 36442979 + 0 NA promoter-TSS (NM_152990) promoter-TSS (NM_152990) -18 NM_152990 222659 Hs.520097 NM_152990 ENSG00000179165 PXT1 STEPP peroxisomal, testis specific 1 protein-coding 26386 chr7 72829289 72829440 + 0 NA promoter-TSS (NR_001588) promoter-TSS (NR_001588) -9 NR_024111 155370 Hs.585053 NR_001588 ENSG00000225648 SBDSP1 SBDSP Shwachman-Bodian-Diamond syndrome pseudogene 1 pseudo 19998 chr3 120160141 120160325 + 0 NA Intergenic Intergenic -65816 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 14539 chr19 45001902 45002121 + 0 NA intron (NM_006509, intron 1 of 10) CpG 562 NM_006509 5971 Hs.654402 NM_006509 ENSG00000104856 RELB I-REL|IREL|REL-B RELB proto-oncogene, NF-kB subunit protein-coding 7001 chr12 50763886 50764030 + 0 NA promoter-TSS (NM_005171) promoter-TSS (NM_005171) -48 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 20551 chr3 160666304 160666408 + 0 NA Intergenic L2a|LINE|L2 -10804 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 16578 chr2 163736282 163736360 + 0 NA promoter-TSS (NM_001321825) promoter-TSS (NM_001321825) -314 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 10940 chr16 4253977 4254092 + 0 NA promoter-TSS (NR_039999) promoter-TSS (NR_039999) -245 NR_039999 100507501 Hs.632979 NR_039999 ENSG00000262468 LINC01569 - long intergenic non-protein coding RNA 1569 ncRNA 25366 chr6 153170675 153170779 + 0 NA Intergenic LTR78B|LTR|ERV1 -39473 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G-protein signaling 17 protein-coding 3643 chr10 46228698 46228802 + 0 NA intron (NR_103828, intron 2 of 2) L1PA17|LINE|L1 40858 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - anthrax toxin receptor-like pseudogene 1 pseudo 2346 chr1 200416043 200416147 + 0 NA Intergenic Intergenic -6037 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 2195 chr1 182687499 182687603 + 0 NA Intergenic Charlie17a|DNA|hAT-Charlie -14619 NM_001102450 85397 Hs.20982 NM_033345 ENSG00000135824 RGS8 - regulator of G-protein signaling 8 protein-coding 20808 chr3 184085536 184085741 + 0 NA Intergenic MER92C|LTR|ERV1 -11426 NM_001256613 285242 Hs.449179 NM_182589 ENSG00000186038 HTR3E 5-HT3-E|5-HT3E|5-HT3c1 5-hydroxytryptamine receptor 3E protein-coding 19402 chr3 41508323 41508476 + 0 NA intron (NR_136342, intron 30 of 34) L1PB1|LINE|L1 308948 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 27703 chr8 38231475 38231579 + 0 NA promoter-TSS (NM_015214) promoter-TSS (NM_015214) 36 NM_001164234 23259 Hs.434966 NM_015214 ENSG00000085788 DDHD2 SAMWD1|SPG54|iPLA(1)gamma DDHD domain containing 2 protein-coding 19601 chr3 58491845 58492008 + 0 NA promoter-TSS (NM_001128214) promoter-TSS (NM_001128214) -170 NM_001128214 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 19204 chr3 14990443 14990547 + 0 NA intron (NM_003298, intron 1 of 14) intron (NM_003298, intron 1 of 14) -42054 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 13045 chr17 76601949 76602166 + 0 NA Intergenic MER41B|LTR|ERV1 -15994 NM_006456 10610 Hs.592105 NM_006456 ENSG00000070731 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 5202 chr11 43880682 43880849 + 0 NA promoter-TSS (NM_139178) promoter-TSS (NM_139178) -42 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 2555 chr1 209364841 209364872 + 0 NA Intergenic Intergenic 39400 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 29074 chr9 35489770 35489874 + 0 NA promoter-TSS (NM_014806) promoter-TSS (NM_014806) -11 NM_014806 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin RUN and SH3 domain containing 2 protein-coding 16881 chr2 197499896 197500000 + 0 NA promoter-TSS (NM_002156) promoter-TSS (NM_002156) -32 NM_002156 3329 Hs.595053 NM_002156 ENSG00000144381 HSPD1 CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13 heat shock protein family D (Hsp60) member 1 protein-coding 20634 chr3 170726772 170726876 + 0 NA intron (NR_135556, intron 4 of 5) L2a|LINE|L2 -140750 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 31112 chrX 139194699 139194803 + 0 NA intron (NM_001139501, intron 2 of 7) CpG 10272 NM_001139498 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2 fibroblast growth factor 13 protein-coding 14914 chr2 1717246 1717343 + 0 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 27253 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 27212 chr7 149714676 149714854 + 0 NA promoter-TSS (NM_032534) promoter-TSS (NM_032534) -246 NM_032534 84626 Hs.299560 NM_032534 ENSG00000133619 KRBA1 - KRAB-A domain containing 1 protein-coding 13484 chr18 44887314 44887418 + 0 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 82800 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 11680 chr16 78003037 78003141 + 0 NA Intergenic Intergenic -19457 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 24501 chr6 37692180 37692284 + 0 NA intron (NM_153487, intron 1 of 16) intron (NM_153487, intron 1 of 16) 5758 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 28621 chr8 126624999 126625103 + 0 NA Intergenic Intergenic -66585 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 22612 chr5 61409716 61409820 + 0 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 77495 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 30310 chr9 133135326 133135478 + 0 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) -4245 NM_001271774 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 29079 chr9 35665178 35665282 + 0 NA promoter-TSS (NM_032818) promoter-TSS (NM_032818) 51 NM_032818 84904 Hs.534579 NM_032818 ENSG00000137135 ARHGEF39 C9orf100 Rho guanine nucleotide exchange factor 39 protein-coding 4084 chr10 93289132 93289236 + 0 NA Intergenic Intergenic 193133 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 20386 chr3 150370245 150370276 + 0 NA Intergenic Intergenic -38075 NR_130136 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 963 chr1 59596615 59596765 + 0 NA intron (NM_001278224, intron 2 of 9) intron (NM_001278224, intron 2 of 9) 81061 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 10199 chr15 59313958 59314062 + 0 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 58862 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 23254 chr5 134632753 134632787 + 0 NA promoter-TSS (NM_016103) promoter-TSS (NM_016103) 73 NM_001033503 51128 Hs.432984 NM_016103 ENSG00000152700 SAR1B ANDD|CMRD|GTBPB|SARA2 secretion associated Ras related GTPase 1B protein-coding 6340 chr11 129593310 129593425 + 0 NA Intergenic Intergenic 23902 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 13141 chr17 81841433 81841568 + 0 NA Intergenic CpG -6450 NM_001007533 116729 Hs.454720 NM_001007533 ENSG00000182676 PPP1R27 DYSFIP1 protein phosphatase 1 regulatory subunit 27 protein-coding 5627 chr11 72183553 72183655 + 0 NA Intergenic Intergenic -5954 NM_016725 2348 Hs.73769 NM_000802 ENSG00000110195 FOLR1 FBP|FOLR folate receptor 1 protein-coding 17175 chr2 223861509 223861663 + 0 NA Intergenic MIRb|SINE|MIR -23984 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 sigma 3 subunit protein-coding 28225 chr8 94895688 94895852 + 0 NA promoter-TSS (NM_057749) promoter-TSS (NM_057749) -516 NM_057749 9134 Hs.521693 NM_004702 ENSG00000175305 CCNE2 CYCE2 cyclin E2 protein-coding 24691 chr6 52517644 52517789 + 0 NA intron (NM_012288, intron 2 of 10) MamSINE1|SINE|tRNA-RTE 59348 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 8798 chr14 31561302 31561460 + 0 NA promoter-TSS (NM_025152) promoter-TSS (NM_025152) -4 NM_025152 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|huInd1 nucleotide binding protein like protein-coding 1596 chr1 117929650 117929786 + 0 NA promoter-TSS (NM_017686) promoter-TSS (NM_017686) -31 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 22929 chr5 96734171 96734321 + 0 NA intron (NM_001042445, intron 6 of 27) intron (NM_001042445, intron 6 of 27) -9294 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 25179 chr6 134436260 134436340 + 0 NA intron (NR_125852, intron 4 of 4) intron (NR_125852, intron 4 of 4) -1416 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 27735 chr8 41659148 41659252 + 0 NA intron (NM_020480, intron 2 of 2) Tigger17a|DNA|TcMar-Tigger -1244 NR_106984 102465696 NR_106984 ENSG00000283450 MIR486-2 hsa-mir-486-2|mir-486-2 microRNA 486-2 ncRNA 2697 chr1 217482489 217482593 + 0 NA intron (NM_018040, intron 8 of 9) L2a|LINE|L2 148561 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30 G-patch domain containing 2 protein-coding 29839 chr9 109520993 109521041 + 0 NA Intergenic Intergenic -9472 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 6423 chr12 22227 22331 + 0 NA intron (NR_130745, intron 2 of 10) intron (NR_130745, intron 2 of 10) 9736 NR_130745 100288778 Hs.459573 NR_130745 ENSG00000226210 LOC100288778 - WAS protein family homolog 1 pseudogene pseudo 30897 chrX 103447045 103447149 + 0 NA Intergenic Intergenic 69916 NM_014380 27018 Hs.448588 NM_014380 ENSG00000166681 BEX3 Bex|DXS6984E|HGR74|NADE|NGFRAP1 brain expressed X-linked 3 protein-coding 21659 chr4 105061427 105061457 + 0 NA Intergenic Intergenic -84433 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 17838 chr20 31566975 31567079 + 0 NA TTS (NR_046853) TTS (NR_046853) 6236 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 26226 chr7 47635153 47635292 + 0 NA Intergenic Intergenic 13283 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 28853 chr8 144792395 144792500 + 0 NA promoter-TSS (NM_001317782) promoter-TSS (NM_001317782) -1 NM_000973 6132 Hs.178551 NM_000973 ENSG00000161016 RPL8 L8 ribosomal protein L8 protein-coding 26425 chr7 74587469 74587573 + 0 NA intron (NM_016328, intron 22 of 26) intron (NM_016328, intron 22 of 26) -70144 NM_032999 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 12756 chr17 57663123 57663133 + 0 NA intron (NM_138962, intron 11 of 13) intron (NM_138962, intron 11 of 13) -54716 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 12662 chr17 50151072 50151208 + 0 NA promoter-TSS (NM_032595) promoter-TSS (NM_032595) -623 NM_032595 84687 Hs.514323 NM_032595 ENSG00000108819 PPP1R9B PPP1R6|PPP1R9|SPINO|Spn protein phosphatase 1 regulatory subunit 9B protein-coding 23352 chr5 140564424 140564479 + 0 NA promoter-TSS (NR_106889) promoter-TSS (NR_106889) -114 NM_080670 113829 Hs.406840 NM_080670 ENSG00000176087 SLC35A4 - solute carrier family 35 member A4 protein-coding 12350 chr17 34638321 34638425 + 0 NA 3' UTR (NM_001304438, exon 9 of 9) 3' UTR (NM_001304438, exon 9 of 9) 57624 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 12063 chr17 7992704 7992808 + 0 NA Intergenic Intergenic -9914 NM_000180 3000 Hs.592109 NM_000180 ENSG00000132518 GUCY2D CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC guanylate cyclase 2D, retinal protein-coding 14101 chr19 11036004 11036123 + 0 NA intron (NM_001128848, intron 27 of 32) intron (NM_001128848, intron 27 of 32) 51911 NM_001128845 6597 Hs.327527 NM_003072 ENSG00000127616 SMARCA4 BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 28154 chr8 88289874 88289978 + 0 NA intron (NM_005941, intron 1 of 9) MIRb|SINE|MIR 37562 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 31000 chrX 119015523 119015661 + 0 NA intron (NM_001289109, intron 11 of 11) intron (NM_001289109, intron 11 of 11) 39260 NM_001289109 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 28287 chr8 100150538 100150694 + 0 NA promoter-TSS (NM_005034) promoter-TSS (NM_005034) 5 NM_005034 5440 Hs.351475 NM_005034 ENSG00000147669 POLR2K ABC10-alpha|RPABC4|RPB10alpha|RPB12|RPB7.0|hRPB7.0|hsRPB10a RNA polymerase II subunit K protein-coding 11949 chr17 4248174 4248292 + 0 NA intron (NM_001330063, intron 1 of 24) MER1B|DNA|hAT-Charlie 15614 NM_001257999 51479 Hs.696087 NM_016376 ENSG00000185722 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 9991 chr15 43371600 43371704 + 0 NA intron (NM_014444, intron 1 of 17) intron (NM_014444, intron 1 of 17) 593 NM_014444 27229 Hs.584887 NM_014444 ENSG00000137822 TUBGCP4 76P|GCP-4|GCP4|Grip76|MCCRP3 tubulin gamma complex associated protein 4 protein-coding 23237 chr5 134093164 134093224 + 0 NA Intergenic Intergenic -21504 NM_003202 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 (T-cell specific, HMG-box) protein-coding 22824 chr5 83925361 83925457 + 0 NA Intergenic Intergenic -204332 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 10429 chr15 73915149 73915269 + 0 NA Intergenic L1M5|LINE|L1 -11249 NM_005576 4016 Hs.65436 NM_005576 ENSG00000129038 LOXL1 LOL|LOXL lysyl oxidase like 1 protein-coding 5594 chr11 69437148 69437297 + 0 NA Intergenic Intergenic 11551 NM_001319657 102724265 Hs.448669 NM_001319657 ENSG00000255980 LOC102724265 - uncharacterized LOC102724265 protein-coding 11445 chr16 58630457 58630580 + 0 NA promoter-TSS (NM_001265612) promoter-TSS (NM_001265612) -632 NM_016284 23019 Hs.460923 NM_016284 ENSG00000125107 CNOT1 AD-005|CDC39|NOT1|NOT1H CCR4-NOT transcription complex subunit 1 protein-coding 8266 chr13 49691543 49691683 + 0 NA promoter-TSS (NR_103802) promoter-TSS (NR_103802) -126 NM_032565 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP emopamil binding protein like protein-coding 22178 chr5 6378480 6378633 + 0 NA promoter-TSS (NM_032286) promoter-TSS (NM_032286) -30 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 15127 chr2 19801495 19801599 + 0 NA Intergenic Intergenic -67307 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 7308 chr12 77995549 77995653 + 0 NA intron (NM_014903, intron 6 of 38) intron (NM_014903, intron 6 of 38) 164312 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 11747 chr16 82634125 82634229 + 0 NA intron (NM_001257, intron 1 of 13) intron (NM_001257, intron 1 of 13) 7383 NM_001257 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 15896 chr2 85285557 85285725 + 0 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 42655 NM_001206840 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 6830 chr12 31518873 31518977 + 0 NA intron (NM_001308339, intron 1 of 22) intron (NM_001308339, intron 1 of 22) -70998 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 21246 chr4 23022176 23022181 + 0 NA Intergenic MamGypLTR1a|LTR|Gypsy 308089 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 8860 chr14 35292198 35292308 + 0 NA promoter-TSS (NM_001282233) promoter-TSS (NM_001282233) -64 NM_001282233 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 22930 chr5 96807891 96807978 + 0 NA 5' UTR (NM_016442, exon 1 of 20) 5' UTR (NM_016442, exon 1 of 20) 255 NM_001040458 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 18252 chr20 53748222 53748354 + 0 NA Intergenic LTR82A|LTR|ERVL 127421 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 11186 chr16 28924774 28924920 + 0 NA intron (NM_024816, intron 1 of 12) CpG 364 NM_024816 79874 Hs.555978 NM_024816 ENSG00000177548 RABEP2 FRA rabaptin, RAB GTPase binding effector protein 2 protein-coding 26467 chr7 77482084 77482237 + 0 NA Intergenic Intergenic -55296 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase, non-receptor type 12 protein-coding 15279 chr2 29113985 29114076 + 0 NA promoter-TSS (NR_109844) promoter-TSS (NR_109844) -848 NR_109844 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 4650 chr11 207492 207645 + 0 NA promoter-TSS (NM_001098787) promoter-TSS (NM_001098787) 57 NM_021932 60626 Hs.592292 NM_021932 ENSG00000177963 RIC8A RIC8 RIC8 guanine nucleotide exchange factor A protein-coding 22399 chr5 38556779 38556909 + 0 NA promoter-TSS (NR_103553) promoter-TSS (NR_103553) 58 NR_103554 100506495 Hs.657602 NR_103553 ENSG00000244968 LIFR-AS1 - LIFR antisense RNA 1 ncRNA 8378 chr13 76856150 76856279 + 0 NA Intergenic MER51A|LTR|ERV1 30191 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 23231 chr5 133845055 133845168 + 0 NA Intergenic Intergenic -68566 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 27090 chr7 139036235 139036285 + 0 NA promoter-TSS (NM_080660) promoter-TSS (NM_080660) -231 NM_080660 92092 Hs.512833 NM_080660 ENSG00000146858 ZC3HAV1L C7orf39 zinc finger CCCH-type containing, antiviral 1 like protein-coding 10091 chr15 51450114 51450226 + 0 NA exon (NM_001174116, exon 42 of 43) exon (NM_001174116, exon 42 of 43) 72924 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 18201 chr20 50844816 50844969 + 0 NA intron (NM_198799, intron 4 of 4) intron (NM_198799, intron 4 of 4) 49998 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 26056 chr7 36367122 36367226 + 0 NA promoter-TSS (NM_001199707) promoter-TSS (NM_001199707) -1 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 7153 chr12 57111770 57111884 + 0 NA promoter-TSS (NM_003153) promoter-TSS (NM_003153) -414 NM_001178078 6778 Hs.524518 NM_003153 ENSG00000166888 STAT6 D12S1644|IL-4-STAT|STAT6B|STAT6C signal transducer and activator of transcription 6 protein-coding 26804 chr7 107952665 107952769 + 0 NA intron (NM_002291, intron 22 of 33) intron (NM_002291, intron 22 of 33) 50642 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 283 chr1 19485597 19485748 + 0 NA promoter-TSS (NM_001313932) promoter-TSS (NM_001313932) -31 NM_004930 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line beta subunit protein-coding 21973 chr4 164442304 164442408 + 0 NA Intergenic L2b|LINE|L2 -59101 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 13948 chr19 4400566 4400567 + 0 NA promoter-TSS (NM_001199944) promoter-TSS (NM_001199944) 2 NM_003025 6455 Hs.97616 NM_003025 ENSG00000141985 SH3GL1 CNSA1|EEN|SH3D2B|SH3P8 SH3 domain containing GRB2 like 1, endophilin A2 protein-coding 7304 chr12 77888776 77888880 + 0 NA intron (NM_014903, intron 1 of 38) intron (NM_014903, intron 1 of 38) 57539 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 18401 chr20 63642099 63642251 + 0 NA non-coding (NR_075070, exon 4 of 5) non-coding (NR_075070, exon 4 of 5) 10591 NM_001276310 50861 Hs.639609 NM_015894 ENSG00000197457 STMN3 SCLIP stathmin 3 protein-coding 5860 chr11 93784748 93784785 + 0 NA intron (NM_004268, intron 1 of 11) CpG 527 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|TRAP80 mediator complex subunit 17 protein-coding 25045 chr6 116100966 116101066 + 0 NA exon (NM_152729, exon 1 of 12) exon (NM_152729, exon 1 of 12) 180 NM_152729 221294 Hs.520341 NM_152729 ENSG00000178425 NT5DC1 C6orf200|LP2642|NT5C2L1 5'-nucleotidase domain containing 1 protein-coding 18063 chr20 44388624 44388679 + 0 NA intron (NR_109949, intron 2 of 3) intron (NR_109949, intron 2 of 3) 7055 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 12986 chr17 75012581 75012605 + 0 NA promoter-TSS (NM_001303265) promoter-TSS (NM_001303265) -71 NM_001545 3396 Hs.407955 NM_001545 ENSG00000167862 MRPL58 DS-1|DS1|ICT1|MRP-L58 mitochondrial ribosomal protein L58 protein-coding 4178 chr10 97869497 97869601 + 0 NA 3' UTR (NM_001010917, exon 5 of 5) 3' UTR (NM_001010917, exon 5 of 5) 19311 NM_001010917 401647 Hs.567524 NM_001010917 ENSG00000155265 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family member B protein-coding 3414 chr10 22817112 22817216 + 0 NA Intergenic Intergenic -102590 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 14432 chr19 38899727 38899817 + 0 NA promoter-TSS (NM_002503) promoter-TSS (NM_002503) 51 NM_012237 22933 Hs.466693 NM_012237 ENSG00000068903 SIRT2 SIR2|SIR2L|SIR2L2 sirtuin 2 protein-coding 17887 chr20 33796628 33796781 + 0 NA intron (NR_110623, intron 2 of 3) intron (NR_110623, intron 2 of 3) 14395 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 17288 chr2 232606231 232606347 + 0 NA intron (NM_001243252, intron 1 of 3) CpG 232 NM_001243252 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 7040 chr12 52905117 52905178 + 0 NA promoter-TSS (NM_002273) promoter-TSS (NM_002273) -63 NM_002273 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 9868 chr15 35713916 35714020 + 0 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -167765 NM_080650 89978 Hs.107196 NM_080650 ENSG00000134146 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 11553 chr16 69173659 69173767 + 0 NA Intergenic Intergenic -13434 NM_006750 6645 Hs.461117 NM_006750 ENSG00000168807 SNTB2 D16S2531E|EST25263|SNT2B2|SNT3|SNTL syntrophin beta 2 protein-coding 9494 chr14 85533136 85533240 + 0 NA promoter-TSS (NR_144385) promoter-TSS (NR_144385) -134 NR_144385 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 7742 chr12 120116882 120116986 + 0 NA promoter-TSS (NM_006861) promoter-TSS (NM_006861) -95 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 9318 chr14 71021872 71022020 + 0 NA intron (NM_014982, intron 12 of 35) L2|LINE|L2 114541 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex homolog 1 (Drosophila) protein-coding 12775 chr17 58417579 58417683 + 0 NA promoter-TSS (NM_017763) promoter-TSS (NM_017763) -49 NM_001305544 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 20123 chr3 129249515 129249674 + 0 NA promoter-TSS (NM_016128) promoter-TSS (NM_016128) -16 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 22713 chr5 73448692 73448857 + 0 NA promoter-TSS (NM_004472) promoter-TSS (NM_004472) -247 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 7683 chr12 113335084 113335193 + 0 NA promoter-TSS (NM_024959) promoter-TSS (NM_024959) 30 NM_024959 80024 Hs.286194 NM_024959 ENSG00000089060 SLC8B1 NCKX6|NCLX|SLC24A6 solute carrier family 8 member B1 protein-coding 18813 chr22 31870988 31871062 + 0 NA intron (NM_001136029, intron 33 of 41) L2b|LINE|L2 67429 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 9669 chr14 100238723 100238891 + 0 NA promoter-TSS (NM_003403) promoter-TSS (NM_003403) 42 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 27869 chr8 55946038 55946142 + 0 NA intron (NM_002350, intron 2 of 12) intron (NM_002350, intron 2 of 12) 66263 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 24544 chr6 42030626 42030730 + 0 NA intron (NM_001287434, intron 1 of 4) intron (NM_001287434, intron 1 of 4) 18216 NM_001136126 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 7638 chr12 109880625 109880689 + 0 NA promoter-TSS (NM_016433) promoter-TSS (NM_016433) -169 NM_016433 51228 Hs.381256 NM_016433 ENSG00000139433 GLTP - glycolipid transfer protein protein-coding 27761 chr8 43093326 43093456 + 0 NA promoter-TSS (NM_001277971) promoter-TSS (NM_001277971) -115 NM_001277971 84197 Hs.491646 NM_032237 ENSG00000185900 POMK MDDGA12|MDDGC12|SGK196 protein-O-mannose kinase protein-coding 21030 chr3 195030909 195031042 + 0 NA Intergenic Intergenic -63613 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 14964 chr2 9310507 9310654 + 0 NA intron (NM_003887, intron 3 of 27) intron (NM_003887, intron 3 of 27) 103815 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 11571 chr16 70165155 70165306 + 0 NA intron (NR_126007, intron 1 of 2) intron (NR_126007, intron 1 of 2) 8218 NR_126007 400541 Hs.461183 NR_126007 ENSG00000247228 LOC400541 - uncharacterized LOC400541 ncRNA 24953 chr6 101083618 101083722 + 0 NA Intergenic Intergenic -202298 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 23075 chr5 117455703 117455807 + 0 NA intron (NR_046089, intron 2 of 5) L1PA17|LINE|L1 40243 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 8307 chr13 53010872 53011025 + 0 NA Intergenic Intergenic -17793 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 30916 chrX 105564755 105564857 + 0 NA intron (NM_017416, intron 6 of 10) intron (NM_017416, intron 6 of 10) -257737 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 1686 chr1 150568316 150568420 + 0 NA intron (NR_104133, intron 2 of 3) intron (NR_104133, intron 2 of 3) 6184 NR_104133 574406 Hs.516243 NM_001025493 ENSG00000203804 ADAMTSL4-AS1 C1orf138 ADAMTSL4 antisense RNA 1 ncRNA 15841 chr2 74833986 74834090 + 0 NA 5' UTR (NM_000189, exon 1 of 18) 5' UTR (NM_000189, exon 1 of 18) 1383 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 29493 chr9 89180395 89180529 + 0 NA Intergenic Intergenic -1695 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 27815 chr8 52629582 52629590 + 0 NA intron (NM_001083617, intron 21 of 23) MER4B|LTR|ERV1 -64125 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 FAM150A AUGA|AUGB|UNQ9433 family with sequence similarity 150 member A protein-coding 18458 chr21 29298840 29298975 + 0 NA promoter-TSS (NM_206866) promoter-TSS (NM_206866) 112 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 19158 chr3 11136886 11137015 + 0 NA promoter-TSS (NM_001098213) promoter-TSS (NM_001098213) -143 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 13150 chr17 82003847 82004015 + 0 NA intron (NM_001330528, intron 6 of 14) intron (NM_001330528, intron 6 of 14) 18978 NM_144998 201254 Hs.37616 NM_144998 ENSG00000169689 CENPX CENP-X|D9|FAAP10|MHF2|STRA13 centromere protein X protein-coding 19565 chr3 53630635 53630739 + 0 NA intron (NM_000720, intron 3 of 48) Tigger13a|DNA|TcMar-Tigger 135638 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 29361 chr9 81559831 81559935 + 0 NA Intergenic Intergenic 129652 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 4817 chr11 10541135 10541250 + 0 NA promoter-TSS (NM_016422) promoter-TSS (NM_016422) 35 NM_016422 50862 Hs.44685 NM_016422 ENSG00000110315 RNF141 ZFP26|ZNF230 ring finger protein 141 protein-coding 4745 chr11 6363206 6363315 + 0 NA Intergenic Intergenic -27154 NM_001007593 6609 Hs.498173 NM_000543 ENSG00000166311 SMPD1 ASM|ASMASE|NPD sphingomyelin phosphodiesterase 1 protein-coding 13239 chr18 6781936 6782040 + 0 NA Intergenic Intergenic -52126 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 14009 chr19 6766100 6766300 + 0 NA intron (NM_005490, intron 1 of 9) intron (NM_005490, intron 1 of 9) 1312 NM_005490 10045 Hs.439645 NM_005490 ENSG00000125731 SH2D3A NSP1 SH2 domain containing 3A protein-coding 24049 chr6 12290105 12290135 + 0 NA promoter-TSS (NM_001168319) promoter-TSS (NM_001168319) -176 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 8010 chr13 27125654 27125759 + 0 NA intron (NR_046547, intron 1 of 2) L1P2|LINE|L1 173 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 26339 chr7 65750937 65751045 + 0 NA promoter-TSS (NR_103527) promoter-TSS (NR_103527) -67 NR_103527 441242 Hs.373941 NM_001013464 ENSG00000272693 LOC441242 - uncharacterized LOC441242 ncRNA 27249 chr7 152759687 152759841 + 0 NA promoter-TSS (NR_073001) promoter-TSS (NR_073001) 15 NR_073000 57180 Hs.647117 NM_020445 ENSG00000133627 ACTR3B ARP11|ARP3BETA ARP3 actin related protein 3 homolog B protein-coding 26232 chr7 47991904 47992008 + 0 NA intron (NM_001284350, intron 9 of 10) intron (NM_001284350, intron 9 of 10) -12331 NR_037917 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 11980 chr17 4967357 4967480 + 0 NA TTS (NM_001171167) TTS (NM_001171167) 419 NM_004890 9552 Hs.90436 NM_004890 ENSG00000091640 SPAG7 ACRP|FSA-1 sperm associated antigen 7 protein-coding 1065 chr1 67356098 67356202 + 0 NA intron (NM_001559, intron 9 of 15) intron (NM_001559, intron 9 of 15) 48786 NM_001258215 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 24182 chr6 22236910 22237014 + 0 NA Intergenic Intergenic 60539 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 20762 chr3 181908106 181908210 + 0 NA Intergenic Intergenic -44206 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 9089 chr14 58078331 58078435 + 0 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 73856 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 C14orf37 UT2|c14_5376 chromosome 14 open reading frame 37 protein-coding 22675 chr5 68899144 68899158 + 0 NA Intergenic Intergenic 130776 NR_130778 101928885 Hs.630474 NR_130778 LOC101928885 - uncharacterized LOC101928885 ncRNA 15908 chr2 85561426 85561572 + 0 NA promoter-TSS (NM_000821) promoter-TSS (NM_000821) 10 NM_001311312 2677 Hs.77719 NM_000821 ENSG00000115486 GGCX VKCFD1 gamma-glutamyl carboxylase protein-coding 15550 chr2 54103891 54104015 + 0 NA intron (NM_001320586, intron 4 of 6) intron (NM_001320586, intron 4 of 6) -11320 NM_138448 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 6002 chr11 106022264 106022446 + 0 NA promoter-TSS (NM_001318749) promoter-TSS (NM_001318749) -68 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 4068 chr10 91798293 91798424 + 0 NA promoter-TSS (NR_108070) promoter-TSS (NR_108070) -36 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 2749 chr1 221440231 221440251 + 0 NA Intergenic Intergenic -103945 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 23519 chr5 150497691 150497831 + 0 NA promoter-TSS (NM_001301063) promoter-TSS (NM_001301063) -17 NM_001301063 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 8015 chr13 27270602 27270696 + 0 NA promoter-TSS (NM_001331126) promoter-TSS (NM_001331126) 322 NM_206827 387496 Hs.192131 NM_206827 ENSG00000122035 RASL11A - RAS like family 11 member A protein-coding 23845 chr5 181205221 181205325 + 0 NA promoter-TSS (NM_203294) promoter-TSS (NM_203294) 20 NM_033342 81786 Hs.487412 NM_033342 ENSG00000146054 TRIM7 GNIP|RNF90 tripartite motif containing 7 protein-coding 30624 chrX 40097887 40097991 + 0 NA promoter-TSS (NM_017745) promoter-TSS (NM_017745) -473 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 9216 chr14 64967160 64967247 + 0 NA intron (NM_001330182, intron 1 of 7) intron (NM_001330182, intron 1 of 7) 4954 NM_001308154 376267 Hs.512492 NM_198686 ENSG00000139998 RAB15 - RAB15, member RAS oncogene family protein-coding 25025 chr6 111985272 111985425 + 0 NA Intergenic Intergenic -68727 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 WISP3 CCN6|LIBC|PPAC|PPD|WISP-3 WNT1 inducible signaling pathway protein 3 protein-coding 24206 chr6 25490141 25490245 + 0 NA intron (NM_001173977, intron 13 of 36) intron (NM_001173977, intron 13 of 36) -162008 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 1021 chr1 64172143 64172179 + 0 NA intron (NM_005012, intron 8 of 8) intron (NM_005012, intron 8 of 8) -31457 NM_152489 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U (putative) protein-coding 17106 chr2 218672075 218672103 + 0 NA promoter-TSS (NM_022453) promoter-TSS (NM_022453) -31 NM_022453 64320 Hs.471403 NM_022453 ENSG00000163481 RNF25 AO7 ring finger protein 25 protein-coding 5094 chr11 32137455 32137559 + 0 NA Intergenic L2c|LINE|L2 6405 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 934 chr1 58163065 58163169 + 0 NA intron (NM_021080, intron 1 of 16) LTR50|LTR|ERVL 87422 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 - DAB1, reelin adaptor protein protein-coding 24964 chr6 105609079 105609147 + 0 NA Intergenic Intergenic -205989 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 9420 chr14 77028656 77028818 + 0 NA promoter-TSS (NM_024496) promoter-TSS (NM_024496) -38 NM_024496 64207 Hs.179260 NM_024496 ENSG00000119669 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein like protein-coding 5990 chr11 104452607 104452680 + 0 NA Intergenic Intergenic 156659 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LOC102723895 - uncharacterized LOC102723895 ncRNA 28570 chr8 123416554 123416661 + 0 NA promoter-TSS (NM_001283024) promoter-TSS (NM_001283024) -118 NM_001283027 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 27843 chr8 53880852 53880995 + 0 NA promoter-TSS (NR_104578) promoter-TSS (NR_104578) 51 NM_003702 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G-protein signaling 20 protein-coding 25500 chr6 169790273 169790377 + 0 NA non-coding (NR_026781, exon 2 of 2) non-coding (NR_026781, exon 2 of 2) 252 NR_026780 80069 Hs.677182 NM_025002 ENSG00000231690 LINC00574 C6orf208|dJ182D15.1 long intergenic non-protein coding RNA 574 ncRNA 19219 chr3 16205514 16205605 + 0 NA intron (NM_054110, intron 3 of 9) Tigger19b|DNA|TcMar-Tigger -11217 NM_001319052 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 3537 chr10 32346283 32346440 + 0 NA intron (NR_104159, intron 1 of 1) CpG 687 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 17519 chr20 5119426 5119570 + 0 NA promoter-TSS (NR_028370) promoter-TSS (NR_028370) -88 NR_028370 100302739 Hs.744934 NR_028370 PCNA-AS1 PCNA-AS|PCNAAS PCNA antisense RNA 1 ncRNA 4821 chr11 10808902 10809034 + 0 NA promoter-TSS (NR_120540) promoter-TSS (NR_120540) 67 NM_001418 1982 Hs.183684 NM_001418 ENSG00000110321 EIF4G2 AAG1|DAP5|NAT1|P97 eukaryotic translation initiation factor 4 gamma 2 protein-coding 14002 chr19 6424913 6425061 + 0 NA promoter-TSS (NM_003685) promoter-TSS (NM_003685) -176 NM_003685 8570 Hs.727344 NM_003685 ENSG00000088247 KHSRP FBP2|FUBP2|KSRP KH-type splicing regulatory protein protein-coding 948 chr1 58823565 58823669 + 0 NA intron (NR_108106, intron 1 of 1) MIRb|SINE|MIR 38466 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 16178 chr2 113627218 113627368 + 0 NA promoter-TSS (NR_024531) promoter-TSS (NR_024531) 64 NM_007082 11159 Hs.446425 NM_007082 ENSG00000144134 RABL2A - RAB, member of RAS oncogene family-like 2A protein-coding 8239 chr13 47774257 47774393 + 0 NA Intergenic MamGypLTR3|LTR|Gypsy 158297 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 21073 chr3 197422146 197422250 + 0 NA Intergenic Intergenic -122926 NM_001290983 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs large MAGUK scaffold protein 1 protein-coding 14864 chr19 58278683 58278787 + 0 NA promoter-TSS (NM_021089) promoter-TSS (NM_021089) -217 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 14549 chr19 45400251 45400463 + 0 NA intron (NM_001142502, intron 1 of 12) intron (NM_001142502, intron 1 of 12) 4697 NM_006663 10848 Hs.466937 NM_006663 ENSG00000104881 PPP1R13L IASPP|NKIP1|RAI|RAI4 protein phosphatase 1 regulatory subunit 13 like protein-coding 14047 chr19 9075677 9075789 + 0 NA Intergenic Intergenic -17512 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor family 1 subfamily M member 1 protein-coding 27318 chr8 1764354 1764507 + 0 NA intron (NM_018941, intron 1 of 2) CpG 154 NR_134303 101927752 Hs.356690 NR_134302 ENSG00000253982 LOC101927752 - uncharacterized LOC101927752 ncRNA 25824 chr7 21617971 21618075 + 0 NA intron (NM_001277115, intron 23 of 81) MER91A|DNA|hAT-Tip100 74808 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 226 chr1 16173590 16173719 + 0 NA Intergenic Intergenic -17545 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 18175 chr20 50116014 50116118 + 0 NA promoter-TSS (NM_022442) promoter-TSS (NM_022442) -107 NM_001257393 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 4982 chr11 19596139 19596243 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 20881 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 7473 chr12 96485288 96485389 + 0 NA Intergenic Intergenic -4233 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 24336 chr6 30731009 30731143 + 0 NA exon (NM_005803, exon 9 of 13).3 exon (NM_005803, exon 9 of 13).3 9527 NM_001293212 203068 Hs.636480 NM_178014 ENSG00000196230 TUBB CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5 tubulin beta class I protein-coding 23671 chr5 168114584 168114688 + 0 NA intron (NM_001080428, intron 6 of 24) intron (NM_001080428, intron 6 of 24) 117736 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 8960 chr14 49892913 49893043 + 0 NA promoter-TSS (NM_001663) promoter-TSS (NM_001663) -40 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 28170 chr8 89902406 89902558 + 0 NA promoter-TSS (NM_001126111) promoter-TSS (NM_001126111) -52 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 21959 chr4 159390835 159390939 + 0 NA Intergenic LTR12C|LTR|ERV1 123041 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 21820 chr4 139015738 139015892 + 0 NA promoter-TSS (NM_012118) promoter-TSS (NM_012118) 56 NM_012118 25819 Hs.639842 NM_012118 ENSG00000151014 NOCT CCR4L|CCRN4L|Ccr4c|NOC nocturnin protein-coding 3229 chr10 5585168 5585294 + 0 NA Intergenic Intergenic 10887 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 2466 chr1 204506527 204506631 + 0 NA Intergenic tRNA-Lys-AAA|tRNA|tRNA -9800 NM_001278518 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 62 chr1 3796500 3796638 + 0 NA promoter-TSS (NM_020710) promoter-TSS (NM_020710) -65 NM_020710 57470 Hs.268488 NM_020710 ENSG00000130764 LRRC47 - leucine rich repeat containing 47 protein-coding 8209 chr13 44989366 44989526 + 0 NA promoter-TSS (NM_018559) promoter-TSS (NM_018559) 32 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 NUFIP1, FMR1 interacting protein 1 protein-coding 26524 chr7 85056014 85056168 + 0 NA intron (NM_152754, intron 6 of 16) intron (NM_152754, intron 6 of 16) 65840 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 7427 chr12 92785250 92785354 + 0 NA intron (NM_003566, intron 22 of 28) intron (NM_003566, intron 22 of 28) 48813 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 31103 chrX 136497199 136497287 + 0 NA promoter-TSS (NM_014500) promoter-TSS (NM_014500) 164 NM_001163280 27336 Hs.204475 NM_014500 ENSG00000102241 HTATSF1 TAT-SF1|TATSF1|dJ196E23.2 HIV-1 Tat specific factor 1 protein-coding 21890 chr4 148007436 148007540 + 0 NA intron (NM_024605, intron 18 of 22) intron (NM_024605, intron 18 of 22) 224893 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 10657 chr15 89101969 89102098 + 0 NA intron (NM_007011, intron 2 of 14) intron (NM_007011, intron 2 of 14) 13883 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 24072 chr6 13615233 13615395 + 0 NA promoter-TSS (NM_001317724) promoter-TSS (NM_001317724) -13 NM_016167 51406 Hs.306242 NM_016167 ENSG00000225921 NOL7 C6orf90|PQBP3|RARG-1|dJ223E5.2 nucleolar protein 7 protein-coding 19638 chr3 67362787 67362891 + 0 NA intron (NM_001177599, intron 10 of 10) LTR16A1|LTR|ERVL 137375 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 28528 chr8 120939111 120939215 + 0 NA Intergenic Intergenic -127094 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 6719 chr12 19482699 19482850 + 0 NA intron (NM_001267043, intron 3 of 8) L1PB2|LINE|L1 42193 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 18387 chr20 62427613 62427729 + 0 NA promoter-TSS (NM_080833) promoter-TSS (NM_080833) -98 NM_080833 140893 Hs.180374 NM_080833 ENSG00000130701 RBBP8NL C20orf151 RBBP8 N-terminal like protein-coding 14476 chr19 41397419 41397572 + 0 NA promoter-TSS (NM_020158) promoter-TSS (NM_020158) -144 NM_020158 56915 Hs.283741 NM_020158 ENSG00000077348 EXOSC5 RRP41B|RRP46|Rrp46p|hRrp46p|p12B exosome component 5 protein-coding 6505 chr12 6295360 6295378 + 0 NA Intergenic Intergenic -15067 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 22895 chr5 94111585 94111664 + 0 NA promoter-TSS (NM_001163417) promoter-TSS (NM_001163417) 75 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21 family with sequence similarity 172 member A protein-coding 21829 chr4 139600107 139600203 + 0 NA Intergenic L2a|LINE|L2 -43386 NM_001306200 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing lysine methyltransferase 7 protein-coding 3466 chr10 26622147 26622251 + 0 NA Intergenic Intergenic -20909 NR_026794 731789 Hs.178186 NR_026794 LINC00202-2 - long intergenic non-protein coding RNA 202-2 ncRNA 10035 chr15 45919835 45919963 + 0 NA intron (NR_135680, intron 2 of 4) intron (NR_135680, intron 2 of 4) 214704 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 20680 chr3 174955540 174955729 + 0 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 96313 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 20111 chr3 128942532 128942669 + 0 NA Intergenic MER77B|LTR|ERVL 51543 NM_020741 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 20955 chr3 190563064 190563106 + 0 NA intron (NM_001167931, intron 2 of 11) intron (NM_001167931, intron 2 of 11) 49034 NM_001167931 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 3632 chr10 44978800 44978959 + 0 NA promoter-TSS (NM_007021) promoter-TSS (NM_007021) 3 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 C10orf10 DEPP|FIG|Fseg chromosome 10 open reading frame 10 protein-coding 20950 chr3 190491679 190491783 + 0 NA Intergenic Intergenic -22320 NM_001167928 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 6030 chr11 108497704 108497839 + 0 NA intron (NM_153705, intron 1 of 7) CpG 661 NM_153705 143888 Hs.83286 NM_153705 ENSG00000178202 KDELC2 - KDEL motif containing 2 protein-coding 19698 chr3 87333479 87333624 + 0 NA Intergenic MER57F|LTR|ERV1 -56964 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 6953 chr12 48716742 48716944 + 0 NA 5' UTR (NM_001240, exon 1 of 9) 5' UTR (NM_001240, exon 1 of 9) 155 NM_001240 904 Hs.92308 NM_001240 ENSG00000129315 CCNT1 CCNT|CYCT1|HIVE1 cyclin T1 protein-coding 5969 chr11 102270011 102270052 + 0 NA Intergenic Intergenic -47419 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 25594 chr7 5397295 5397412 + 0 NA intron (NM_001080495, intron 2 of 29) intron (NM_001080495, intron 2 of 29) 26193 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 7968 chr13 23772092 23772236 + 0 NA intron (NM_005932, intron 16 of 18) intron (NM_005932, intron 16 of 18) -116725 NM_001014442 542767 Hs.642624 NM_001014442 C1QTNF9B-AS1 PCOTH C1QTNF9B antisense RNA 1 protein-coding 7907 chr12 132189716 132189820 + 0 NA Intergenic CpG 16260 NM_021808 50614 Hs.301062 NM_021808 ENSG00000182870 GALNT9 GALNAC-T9|GALNACT9 polypeptide N-acetylgalactosaminyltransferase 9 protein-coding 6812 chr12 30026750 30026854 + 0 NA Intergenic Intergenic -242043 NM_175861 83857 Hs.401954 NM_175861 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane and tetratricopeptide repeat containing 1 protein-coding 5808 chr11 86800462 86800566 + 0 NA exon (NM_007173, exon 1 of 2) exon (NM_007173, exon 1 of 2) 274 NM_001293178 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 protease, serine 23 protein-coding 2046 chr1 169116032 169116136 + 0 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 9375 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 8682 chr14 21269661 21269805 + 0 NA promoter-TSS (NM_001077442) promoter-TSS (NM_001077442) -254 NM_031314 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 20833 chr3 184777829 184777937 + 0 NA Intergenic Intergenic -4728 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LINC02069 - long intergenic non-protein coding RNA 2069 ncRNA 24866 chr6 84227638 84227698 + 0 NA promoter-TSS (NM_001286206) promoter-TSS (NM_001286206) -33 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 19942 chr3 115792471 115792539 + 0 NA Intergenic Intergenic 169201 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 23270 chr5 135705285 135705440 + 0 NA Intergenic MIRb|SINE|MIR -51427 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 LINC01959 - long intergenic non-protein coding RNA 1959 ncRNA 18318 chr20 57695107 57695237 + 0 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -4548 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 10697 chr15 90364378 90364507 + 0 NA Intergenic Intergenic 12197 NM_001004309 342132 Hs.55307 NM_001004309 ENSG00000196391 ZNF774 - zinc finger protein 774 protein-coding 6302 chr11 126342042 126342146 + 0 NA non-coding (NR_033839, exon 2 of 2) non-coding (NR_033839, exon 2 of 2) 13493 NR_033839 399972 Hs.585206 NR_033839 ST3GAL4-AS1 DCPS-AS1 ST3GAL4 antisense RNA 1 (head to head) ncRNA 19767 chr3 100709322 100709450 + 0 NA promoter-TSS (NM_006070) promoter-TSS (NM_006070) 55 NM_006070 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 TRK-fused gene protein-coding 11253 chr16 30957110 30957227 + 0 NA promoter-TSS (NM_014712) promoter-TSS (NM_014712) -126 NM_014712 9739 Hs.297483 NM_014712 ENSG00000099381 SETD1A KMT2F|Set1|Set1A SET domain containing 1A protein-coding 8858 chr14 35197102 35197275 + 0 NA intron (NM_001256681, intron 3 of 5) intron (NM_001256681, intron 3 of 5) 74636 NM_001256681 9692 Hs.458487 NM_014672 ENSG00000100890 KIAA0391 MRPP3|PRORP KIAA0391 protein-coding 30250 chr9 129910688 129910792 + 0 NA intron (NM_015033, intron 11 of 16) intron (NM_015033, intron 11 of 16) 41135 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 10203 chr15 59456221 59456429 + 0 NA intron (NM_152450, intron 1 of 8) L2c|LINE|L2 18152 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 6604 chr12 11649066 11649170 + 0 NA promoter-TSS (NM_001987) promoter-TSS (NM_001987) -736 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 28577 chr8 124372514 124372618 + 0 NA 5' UTR (NM_194291, exon 1 of 7) 5' UTR (NM_194291, exon 1 of 7) 133 NM_194291 157378 Hs.187646 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 1934 chr1 161225763 161225869 + 0 NA promoter-TSS (NM_032174) promoter-TSS (NM_032174) -123 NM_001286374 84134 Hs.321653 NM_032174 ENSG00000158882 TOMM40L TOMM40B translocase of outer mitochondrial membrane 40 like protein-coding 29221 chr9 72577586 72577690 + 0 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 55837 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 1916 chr1 160762064 160762168 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 23059 NM_001282593 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 4232 chr10 101191143 101191147 + 0 NA non-coding (NR_120620, exon 4 of 6) non-coding (NR_120620, exon 4 of 6) 14823 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 14983 chr2 9914740 9914774 + 0 NA intron (NM_005680, intron 12 of 14) intron (NM_005680, intron 12 of 14) -36906 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 30180 chr9 128322549 128322551 + 0 NA promoter-TSS (NM_001305942) promoter-TSS (NM_001305942) 42 NM_001305942 51117 Hs.98541 NM_016035 ENSG00000167113 COQ4 CGI-92|COQ10D7 coenzyme Q4 protein-coding 12686 chr17 50866462 50866565 + 0 NA promoter-TSS (NR_038458) promoter-TSS (NR_038458) -159 NM_005749 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 4568 chr10 125064766 125064830 + 0 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -31928 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 17459 chr20 2103216 2103320 + 0 NA exon (NM_080836, exon 2 of 4) exon (NM_080836, exon 2 of 4) 1386 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 9508 chr14 88551478 88551644 + 0 NA intron (NM_007039, intron 1 of 18) CpG 3218 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase, non-receptor type 21 protein-coding 1445 chr1 108046193 108046224 + 0 NA Intergenic Intergenic -81285 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 14521 chr19 44304955 44305099 + 0 NA promoter-TSS (NM_004234) promoter-TSS (NM_004234) -2 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 11574 chr16 70299079 70299224 + 0 NA promoter-TSS (NM_001014449) promoter-TSS (NM_001014449) -8 NM_001014451 11269 Hs.221761 NM_007242 ENSG00000157349 DDX19B DBP5|DDX19|RNAh DEAD-box helicase 19B protein-coding 29458 chr9 87406883 87406939 + 0 NA Intergenic MER4B|LTR|ERV1 -90317 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 20788 chr3 182794026 182794157 + 0 NA intron (NM_014616, intron 1 of 29) CpG 588 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 3580 chr10 35413299 35413378 + 0 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 76464 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 27860 chr8 55193965 55194069 + 0 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 91560 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 18624 chr22 19099177 19099281 + 0 NA intron (NM_005137, intron 1 of 9) intron (NM_005137, intron 1 of 9) 23225 NR_033674 9993 Hs.517357 NM_005137 ENSG00000070413 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 20263 chr3 139389696 139389839 + 0 NA promoter-TSS (NM_004766) promoter-TSS (NM_004766) -36 NR_121608 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 14119 chr19 11505205 11505358 + 0 NA TTS (NM_001243204) TTS (NM_001243204) 642 NM_138783 115950 Hs.465928 NM_138783 ENSG00000161914 ZNF653 E430039K05Rik|ZIP67 zinc finger protein 653 protein-coding 20476 chr3 156555166 156555320 + 0 NA promoter-TSS (NM_001308204) promoter-TSS (NM_001308204) -43 NM_001308197 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 18988 chr22 43143312 43143451 + 0 NA promoter-TSS (NM_173467) promoter-TSS (NM_173467) 16 NM_173467 27349 Hs.349111 NM_014507 ENSG00000100294 MCAT FASN2C|MCT|MT|NET62|fabD malonyl-CoA-acyl carrier protein transacylase protein-coding 14827 chr19 55675027 55675131 + 0 NA promoter-TSS (NM_001130072) promoter-TSS (NM_001130072) -116 NM_001321263 29924 Hs.279953 NM_013333 ENSG00000063245 EPN1 - epsin 1 protein-coding 778 chr1 44030034 44030162 + 0 NA intron (NM_001024845, intron 1 of 13) CpG 1025 NM_001328629 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GLYT1 solute carrier family 6 member 9 protein-coding 27341 chr8 7091899 7091971 + 0 NA Intergenic CpG -35196 NM_021010 1670 Hs.655233 NM_021010 ENSG00000164816 DEFA5 DEF5|HD-5 defensin alpha 5 protein-coding 20003 chr3 120349290 120349495 + 0 NA promoter-TSS (NM_001099678) promoter-TSS (NM_001099678) -53 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 13921 chr19 3136815 3136967 + 0 NA intron (NM_002068, intron 1 of 6) intron (NM_002068, intron 1 of 6) 859 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 G protein subunit alpha 15 protein-coding 5166 chr11 35944259 35944421 + 0 NA intron (NM_001304264, intron 1 of 5) CpG 359 NM_001304263 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 21703 chr4 111642223 111642328 + 0 NA Intergenic Intergenic -503122 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 C4orf32 - chromosome 4 open reading frame 32 protein-coding 20569 chr3 161412161 161412385 + 0 NA Intergenic Intergenic -14154 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 27326 chr8 6405844 6405948 + 0 NA promoter-TSS (NM_001172574) promoter-TSS (NM_001172574) 652 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 22478 chr5 43802169 43802273 + 0 NA Intergenic Intergenic -198991 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 15655 chr2 64273905 64274009 + 0 NA Intergenic Intergenic 45556 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 6297 chr11 126211610 126211793 + 0 NA promoter-TSS (NM_001144827) promoter-TSS (NM_001144827) -9 NM_001144827 84881 Hs.150458 NM_032795 ENSG00000165526 RPUSD4 - RNA pseudouridylate synthase domain containing 4 protein-coding 4168 chr10 97640656 97640705 + 0 NA promoter-TSS (NM_018425) promoter-TSS (NM_018425) -6 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 3744 chr10 60944107 60944211 + 0 NA 5' UTR (NM_001242359, exon 1 of 12) 5' UTR (NM_001242359, exon 1 of 12) 116 NM_001242359 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 3220 chr10 5488515 5488658 + 0 NA Intergenic Intergenic 10984 NM_017422 51806 Hs.180142 NM_017422 ENSG00000178372 CALML5 CLSP calmodulin like 5 protein-coding 19243 chr3 20323472 20323576 + 0 NA Intergenic Intergenic -18944 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 13696 chr18 62635086 62635214 + 0 NA Intergenic Intergenic -80289 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 23754 chr5 174503876 174503953 + 0 NA intron (NR_125806, intron 2 of 5) MamRTE1|LINE|RTE-BovB 167560 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 23134 chr5 125559442 125559546 + 0 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 66233 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 19866 chr3 111676817 111676927 + 0 NA non-coding (NR_046733, exon 2 of 2) non-coding (NR_046733, exon 2 of 2) 561 NR_046733 100874115 Hs.626740 NR_046733 PLCXD2-AS1 - PLCXD2 antisense RNA 1 ncRNA 17329 chr2 236569825 236569929 + 0 NA 5' UTR (NM_020311, exon 1 of 2) 5' UTR (NM_020311, exon 1 of 2) 140 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 9143 chr14 61281435 61281591 + 0 NA 5' UTR (NM_001017970, exon 1 of 1) 5' UTR (NM_001017970, exon 1 of 1) 299 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 28179 chr8 90770381 90770485 + 0 NA Intergenic MIRb|SINE|MIR -21260 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 20095 chr3 127589023 127589127 + 0 NA intron (NM_001142646, intron 1 of 8) intron (NM_001142646, intron 1 of 8) 1684 NM_001136053 131601 Hs.6418 NM_016372 ENSG00000163870 TPRA1 GPR175|TMEM227|TPRA40 transmembrane protein adipocyte associated 1 protein-coding 12318 chr17 31596720 31596851 + 0 NA Intergenic Intergenic 21374 NR_029856 100126356 NR_029856 ENSG00000228768 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 10369 chr15 70093630 70093818 + 0 NA intron (NM_001105192, intron 4 of 19) intron (NM_001105192, intron 4 of 19) 1061 NM_001282982 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 25920 chr7 27130952 27131056 + 0 NA promoter-TSS (NM_002141) promoter-TSS (NM_002141) -224 NM_002141 3201 Hs.533357 NM_002141 ENSG00000197576 HOXA4 HOX1|HOX1D homeobox A4 protein-coding 21749 chr4 119628888 119629115 + 0 NA promoter-TSS (NM_033437) promoter-TSS (NM_033437) -175 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 15832 chr2 74482972 74483076 + 0 NA promoter-TSS (NM_022492) promoter-TSS (NM_022492) -49 NR_027749 64427 Hs.557709 NM_022492 ENSG00000115282 TTC31 - tetratricopeptide repeat domain 31 protein-coding 10438 chr15 74383904 74384058 + 0 NA Intergenic Intergenic -16241 NM_000781 1583 Hs.303980 NM_000781 ENSG00000140459 CYP11A1 CYP11A|CYPXIA1|P450SCC cytochrome P450 family 11 subfamily A member 1 protein-coding 3893 chr10 73591324 73591475 + 0 NA promoter-TSS (NM_001320437) promoter-TSS (NM_001320437) -49 NM_001320437 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 25127 chr6 127267225 127267237 + 0 NA intron (NM_001242849, intron 1 of 2) CpG 393 NM_001242845 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 24063 chr6 13355532 13355675 + 0 NA Intergenic Intergenic -27020 NM_001258457 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 29721 chr9 101487000 101487142 + 0 NA promoter-TSS (NM_001303108) promoter-TSS (NM_001303108) 150 NM_001303107 84302 Hs.388742 NM_032342 ENSG00000165152 TMEM246 C9orf125 transmembrane protein 246 protein-coding 27133 chr7 142001591 142001695 + 0 NA intron (NM_004668, intron 1 of 47) intron (NM_004668, intron 1 of 47) 5764 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 16277 chr2 127401496 127401600 + 0 NA Intergenic MIRb|SINE|MIR -16872 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 13575 chr18 50836585 50836615 + 0 NA Intergenic Intergenic -11216 NM_001127174 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 18050 chr20 43731773 43731804 + 0 NA Intergenic L3|LINE|CR1 -4786 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 29685 chr9 99104987 99105088 + 0 NA promoter-TSS (NM_004612) promoter-TSS (NM_004612) -52 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 24523 chr6 40587682 40587702 + 0 NA promoter-TSS (NM_020737) promoter-TSS (NM_020737) -228 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 4701 chr11 2933499 2933536 + 0 NA Intergenic Intergenic -4097 NM_003311 7262 Hs.154036 NM_003311 ENSG00000181649 PHLDA2 BRW1C|BWR1C|HLDA2|IPL|TSSC3 pleckstrin homology like domain family A member 2 protein-coding 3301 chr10 13383658 13383762 + 0 NA Intergenic Intergenic -35412 NM_012247 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 3136 chr1 246566290 246566484 + 0 NA promoter-TSS (NM_022366) promoter-TSS (NM_022366) 50 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 9369 chr14 74493367 74493471 + 0 NA promoter-TSS (NM_006432) promoter-TSS (NM_006432) -38 NM_006432 10577 Hs.433222 NM_006432 ENSG00000119655 NPC2 EDDM1|HE1 NPC intracellular cholesterol transporter 2 protein-coding 12479 chr17 41353124 41353275 + 0 NA Intergenic Intergenic -2387 NM_004138 3883 Hs.512579 NM_004138 ENSG00000006059 KRT33A HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I keratin 33A protein-coding 29433 chr9 86053692 86053795 + 0 NA intron (NM_177937, intron 3 of 9) (CACAC)n|Simple_repeat|Simple_repeat 45852 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 20353 chr3 148681249 148681348 + 0 NA Intergenic Intergenic -16573 NM_009585 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 5863 chr11 93908911 93909015 + 0 NA Intergenic Intergenic -58461 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 5061 chr11 28536972 28537076 + 0 NA Intergenic L1M5|LINE|L1 -59476 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 1628 chr1 145425567 145425682 + 0 NA Intergenic CpG -19846 NM_001278267 100288142 Hs.445080 NM_001278267 ENSG00000162825 NBPF20 - neuroblastoma breakpoint family member 20 protein-coding 6011 chr11 107041263 107041367 + 0 NA Intergenic Tigger17c|DNA|TcMar-Tigger -22870 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 3219 chr10 5466526 5466727 + 0 NA Intergenic Intergenic 20075 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 16971 chr2 206211848 206211952 + 0 NA intron (NR_104359, intron 1 of 5) AluJo|SINE|Alu 1728 NM_001261455 2825 Hs.184907 NM_005279 ENSG00000183671 GPR1 - G protein-coupled receptor 1 protein-coding 8161 chr13 41060416 41060520 + 0 NA Intergenic CpG -1093 NM_007187 11193 Hs.411300 NM_007187 ENSG00000120688 WBP4 FBP21 WW domain binding protein 4 protein-coding 6042 chr11 110069560 110069620 + 0 NA Intergenic L4_B_Mam|LINE|RTE-X -23771 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 28010 chr8 71362172 71362219 + 0 NA promoter-TSS (NM_001288575) promoter-TSS (NM_001288575) 37 NM_000503 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 25503 chr6 170224804 170224892 + 0 NA Intergenic Intergenic 37721 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 22669 chr5 68277607 68277622 + 0 NA intron (NM_181523, intron 4 of 15) intron (NM_181523, intron 4 of 15) -10810 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 13863 chr19 1438335 1438471 + 0 NA promoter-TSS (NM_001018) promoter-TSS (NM_001018) -22 NM_001308226 6209 Hs.406683 NM_001018 ENSG00000115268 RPS15 RIG|S15 ribosomal protein S15 protein-coding 14542 chr19 45091639 45091776 + 0 NA TTS (NM_001319054) TTS (NM_001319054) -1316 NR_134887 105372419 Hs.662696 NR_134887 ENSG00000267348 LOC105372419 - uncharacterized LOC105372419 ncRNA 24657 chr6 47700198 47700341 + 0 NA intron (NM_153838, intron 1 of 9) intron (NM_153838, intron 1 of 9) 1724 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 2371 chr1 201399567 201399671 + 0 NA promoter-TSS (NM_005558) promoter-TSS (NM_005558) -78 NM_005558 3898 Hs.519035 NM_005558 ENSG00000159166 LAD1 LadA ladinin 1 protein-coding 27722 chr8 40099147 40099216 + 0 NA Intergenic Intergenic -54287 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 6958 chr12 48925552 48925643 + 0 NA promoter-TSS (NM_001143781) promoter-TSS (NM_001143781) -50 NM_016594 51303 Hs.655103 NM_016594 ENSG00000134285 FKBP11 FKBP19 FK506 binding protein 11 protein-coding 26399 chr7 73715880 73715984 + 0 NA intron (NM_004603, intron 1 of 9) intron (NM_004603, intron 1 of 9) 3755 NM_001165903 6804 Hs.647024 NM_004603 ENSG00000106089 STX1A HPC-1|P35-1|STX1|SYN1A syntaxin 1A protein-coding 2610 chr1 211632982 211633086 + 0 NA Intergenic Intergenic -6774 NR_131925 105748977 Hs.553186 NR_131925 LINC01693 - long intergenic non-protein coding RNA 1693 ncRNA 16097 chr2 108786612 108786825 + 0 NA promoter-TSS (NM_001303106) promoter-TSS (NM_001303106) -32 NR_130121 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 9586 chr14 93533584 93533741 + 0 NA intron (NM_020818, intron 11 of 49).2 MLT1G|LTR|ERVL-MaLR 102730 NM_001346218 57578 Hs.126561 NM_020818 ENSG00000133958 UNC79 KIAA1409 unc-79 homolog (C. elegans) protein-coding 3212 chr10 4733336 4733483 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -55339 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 LINC00704 - long intergenic non-protein coding RNA 704 ncRNA 914 chr1 55022138 55022287 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -17264 NM_174936 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 23835 chr5 180327530 180327566 + 0 NA intron (NM_005110, intron 7 of 18) intron (NM_005110, intron 7 of 18) 25839 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 17766 chr20 22827993 22828097 + 0 NA Intergenic Intergenic -207375 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 14427 chr19 38699138 38699241 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 45285 NM_144691 147968 Hs.731775 NM_144691 ENSG00000182472 CAPN12 - calpain 12 protein-coding 9702 chr14 102314287 102314423 + 0 NA Intergenic CpG -3022 NM_001267827 55778 Hs.743359 NM_018335 ENSG00000022976 ZNF839 C14orf131 zinc finger protein 839 protein-coding 1439 chr1 107573070 107573212 + 0 NA 3' UTR (NM_001079874, exon 10 of 10) 3' UTR (NM_001079874, exon 10 of 10) 115363 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 19876 chr3 111903195 111903299 + 0 NA intron (NM_001134439, intron 2 of 17) intron (NM_001134439, intron 2 of 17) 43526 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 18425 chr21 15729901 15730005 + 0 NA promoter-TSS (NM_001283042) promoter-TSS (NM_001283042) -72 NM_013396 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 27380 chr8 10690920 10691024 + 0 NA intron (NM_001040032, intron 2 of 3) intron (NM_001040032, intron 2 of 3) 18335 NM_001040032 203076 Hs.371776 NM_001040032 ENSG00000171060 C8orf74 - chromosome 8 open reading frame 74 protein-coding 24187 chr6 22892661 22892717 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -174765 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 27921 chr8 61023687 61023791 + 0 NA Intergenic Intergenic -55991 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 25736 chr7 16346621 16346776 + 0 NA intron (NM_001101417, intron 2 of 8) intron (NM_001101417, intron 2 of 8) 74624 NM_001101426 729920 Hs.636502 NM_001101417 ENSG00000214960 ISPD MDDGA7|MDDGC7|Nip|hCG_1745121 isoprenoid synthase domain containing protein-coding 13773 chr18 74122844 74122947 + 0 NA intron (NM_001142958, intron 8 of 9) intron (NM_001142958, intron 8 of 9) 24869 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 26072 chr7 37917246 37917350 + 0 NA promoter-TSS (NM_003014) promoter-TSS (NM_003014) -375 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 6246 chr11 122817205 122817332 + 0 NA Intergenic LTR49-int|LTR|ERV1 -21230 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T-cell molecule protein-coding 25940 chr7 28062621 28062755 + 0 NA intron (NM_175061, intron 1 of 4) LTR41B|LTR|ERVL -117769 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 25392 chr6 156777085 156777189 + 0 NA promoter-TSS (NM_017519) promoter-TSS (NM_017519) -718 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 5170 chr11 36149946 36150050 + 0 NA intron (NM_174902, intron 4 of 5) intron (NM_174902, intron 4 of 5) -72097 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 2987 chr1 234564808 234564938 + 0 NA Intergenic Intergenic -33094 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 10525 chr15 79896949 79897084 + 0 NA promoter-TSS (NM_006441) promoter-TSS (NM_006441) -19 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268 methenyltetrahydrofolate synthetase protein-coding 15823 chr2 74391941 74392122 + 0 NA promoter-TSS (NR_033935) promoter-TSS (NR_033935) 56 NR_033935 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 18330 chr20 58389071 58389231 + 0 NA promoter-TSS (NR_036633) promoter-TSS (NR_036633) 32 NR_036633 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 14509 chr19 43668893 43669044 + 0 NA intron (NM_001005376, intron 1 of 6) CpG 1378 NM_001005377 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 14227 chr19 16823156 16823322 + 0 NA Intergenic Intergenic -6148 NM_015260 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 6117 chr11 114439335 114439464 + 0 NA promoter-TSS (NM_015523) promoter-TSS (NM_015523) 13 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 5788 chr11 86160648 86160789 + 0 NA Intergenic L2c|LINE|L2 -83666 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 28835 chr8 144326836 144326965 + 0 NA promoter-TSS (NM_012079) promoter-TSS (NM_012079) 19 NM_012079 8694 Hs.521954 NM_012079 ENSG00000185000 DGAT1 ARAT|ARGP1|DGAT|DIAR7 diacylglycerol O-acyltransferase 1 protein-coding 17370 chr2 238720450 238720545 + 0 NA Intergenic Intergenic -127535 NM_057179 117581 Hs.422585 NM_057179 ENSG00000233608 TWIST2 AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39 twist family bHLH transcription factor 2 protein-coding 5917 chr11 96096207 96096366 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -172079 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 5426 chr11 64185908 64186062 + 0 NA promoter-TSS (NM_006819) promoter-TSS (NM_006819) -130 NM_006819 10963 Hs.337295 NM_006819 ENSG00000168439 STIP1 HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L stress induced phosphoprotein 1 protein-coding 14168 chr19 13853530 13853634 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -16923 NR_029495 407010 NR_029495 ENSG00000207980 MIR23A MIRN23A|hsa-mir-23a|miRNA23A|mir-23a microRNA 23a ncRNA 24319 chr6 30396995 30397132 + 0 NA Intergenic Intergenic 51934 NM_001199121 79897 Hs.183232 NM_024839 ENSG00000241370 RPP21 C6orf135|CAT60 ribonuclease P/MRP subunit p21 protein-coding 22074 chr4 183201487 183201591 + 0 NA intron (NM_024949, intron 2 of 22) intron (NM_024949, intron 2 of 22) 39095 NR_126473 101928734 Hs.570713 NR_126473 ENSG00000251128 WWC2-AS1 - WWC2 antisense RNA 1 ncRNA 13076 chr17 78706356 78706508 + 0 NA intron (NM_004762, intron 3 of 12) L1ME2|LINE|L1 10600 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 11372 chr16 54286859 54286874 + 0 NA promoter-TSS (NM_024336) promoter-TSS (NM_024336) -400 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 3148 chr1 247210832 247210979 + 0 NA Intergenic CpG -8845 NR_037480 100500849 NR_037480 MIR3916 mir-3916 microRNA 3916 ncRNA 24305 chr6 29927134 29927319 + 0 NA promoter-TSS (NR_001317) promoter-TSS (NR_001317) -11 NR_001317 80868 Hs.661198 NR_001317 HCG4B HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3 HLA complex group 4B (non-protein coding) ncRNA 23917 chr6 3849132 3849317 + 0 NA promoter-TSS (NM_012135) promoter-TSS (NM_012135) -142 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 19932 chr3 115147876 115148030 + 0 NA promoter-TSS (NM_015642) promoter-TSS (NM_015642) -673 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 14380 chr19 35745463 35745599 + 0 NA promoter-TSS (NM_001040425) promoter-TSS (NM_001040425) -46 NM_172341 55851 Hs.534465 NM_172341 ENSG00000205155 PSENEN MDS033|MSTP064|PEN-2|PEN2 presenilin enhancer gamma-secretase subunit protein-coding 17521 chr20 5126580 5126672 + 0 NA promoter-TSS (NM_003818) promoter-TSS (NM_003818) -4 NM_002592 5111 Hs.147433 NM_002592 ENSG00000132646 PCNA ATLD2 proliferating cell nuclear antigen protein-coding 17263 chr2 231365406 231365510 + 0 NA intron (NM_001271466, intron 22 of 23) intron (NM_001271466, intron 22 of 23) 2750 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 7064 chr12 53421569 53421704 + 0 NA Intergenic Intergenic -2219 NM_020547 269 Hs.659889 NM_020547 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor type 2 protein-coding 21950 chr4 158805764 158805920 + 0 NA promoter-TSS (NM_001323916) promoter-TSS (NM_001323916) -252 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 17608 chr20 11305604 11305708 + 0 NA Intergenic Intergenic -32273 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 18996 chr22 44684877 44684974 + 0 NA intron (NM_001198721, intron 2 of 9) intron (NM_001198721, intron 2 of 9) 8117 NM_001017530 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 9220 chr14 65070485 65070659 + 0 NA intron (NM_001271069, intron 2 of 2) intron (NM_001271069, intron 2 of 2) -19346 NR_045122 100506321 Hs.711267 NR_045122 ENSG00000259118 LOC100506321 - uncharacterized LOC100506321 ncRNA 8174 chr13 42026760 42026956 + 0 NA Intergenic Intergenic -13178 NM_001204504 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 17551 chr20 6698182 6698291 + 0 NA Intergenic Intergenic -69862 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 14924 chr2 3519480 3519640 + 0 NA promoter-TSS (NM_018269) promoter-TSS (NM_018269) 19 NM_018269 55256 Hs.502773 NM_018269 ENSG00000182551 ADI1 APL1|ARD|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD acireductone dioxygenase 1 protein-coding 12709 chr17 53106261 53106400 + 0 NA Intergenic Intergenic 120810 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 28350 chr8 102685949 102686054 + 0 NA Intergenic Intergenic -30099 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 21719 chr4 113959399 113959477 + 0 NA intron (NM_024590, intron 1 of 1) intron (NM_024590, intron 1 of 1) 20284 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ - arylsulfatase family member J protein-coding 3999 chr10 81116297 81116419 + 0 NA Intergenic L2b|LINE|L2 575539 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 23874 chr6 1686308 1686314 + 0 NA intron (NM_001500, intron 9 of 10) UCON8|DNA|DNA 75865 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 19271 chr3 25424820 25424888 + 0 NA intron (NM_001290300, intron 1 of 7) intron (NM_001290300, intron 1 of 7) -3409 NM_001290266 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 4327 chr10 109884325 109884399 + 0 NA intron (NM_001167604, intron 8 of 19) intron (NM_001167604, intron 8 of 19) 38884 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 14142 chr19 12676551 12676655 + 0 NA TTS (NR_029375) TTS (NR_029375) 4608 NM_001206974 1725 Hs.79064 NM_001930 ENSG00000095059 DHPS DHS|DS|MIG13 deoxyhypusine synthase protein-coding 9487 chr14 85415461 85415596 + 0 NA intron (NR_102737, intron 2 of 2) L2a|LINE|L2 21613 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 6079 chr11 111931863 111932017 + 0 NA intron (NM_001278542, intron 2 of 5) intron (NM_001278542, intron 2 of 5) 4796 NM_001278542 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 23725 chr5 172637190 172637380 + 0 NA Intergenic Intergenic -3981 NM_001308178 54492 Hs.91521 NM_001142651 ENSG00000214357 NEURL1B NEURL3|hNeur2|neur2 neuralized E3 ubiquitin protein ligase 1B protein-coding 21460 chr4 75724436 75724540 + 0 NA promoter-TSS (NM_001290049) promoter-TSS (NM_001290049) -34 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 7313 chr12 78928582 78928739 + 0 NA intron (NM_001135805, intron 2 of 11) MER44C|DNA|TcMar-Tigger 63991 NM_001291901 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 11064 chr16 16022162 16022314 + 0 NA intron (NM_004996, intron 5 of 30) intron (NM_004996, intron 5 of 30) 72661 NM_004996 4363 Hs.391464 NM_004996 ENSG00000103222 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP binding cassette subfamily C member 1 protein-coding 3257 chr10 6722342 6722381 + 0 NA Intergenic Intergenic -15021 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in nonhomologous end joining pathway 1 ncRNA 17314 chr2 234880581 234880685 + 0 NA Intergenic Intergenic -71351 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 29033 chr9 33161885 33161988 + 0 NA intron (NM_001497, intron 1 of 5) intron (NM_001497, intron 1 of 5) -5012 NR_108110 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 25218 chr6 138465099 138465245 + 0 NA intron (NM_001144060, intron 3 of 7) Tigger3c|DNA|TcMar-Tigger -29878 NR_036099 100423001 NR_036099 ENSG00000266555 MIR3145 mir-3145 microRNA 3145 ncRNA 12313 chr17 31451530 31451682 + 0 NA intron (NM_032932, intron 3 of 14) L2a|LINE|L2 -36395 NM_001346749 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 13016 chr17 75707194 75707298 + 0 NA non-coding (NR_126036, exon 10 of 10) non-coding (NR_126036, exon 10 of 10) -14082 NM_001005731 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 29735 chr9 105064549 105064698 + 0 NA Intergenic Intergenic -136377 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 27879 chr8 56682226 56682396 + 0 NA Intergenic Intergenic -122488 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 21299 chr4 38728733 38728850 + 0 NA Intergenic Intergenic 54199 NM_001017388 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 12539 chr17 43369105 43369212 + 0 NA TTS (NR_027412) TTS (NR_027412) 19740 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 11587 chr16 71338262 71338366 + 0 NA Intergenic Intergenic -20399 NR_027910 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 23685 chr5 168651748 168651852 + 0 NA Intergenic L1MB5|LINE|L1 -55127 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 12934 chr17 71922622 71922686 + 0 NA Intergenic Intergenic 103325 NR_110876 102723505 Hs.547482 NR_110876 ENSG00000228639 LINC02095 - long intergenic non-protein coding RNA 2095 ncRNA 7193 chr12 60335968 60336072 + 0 NA Intergenic Helitron3Na_Mam|RC|Helitron 646683 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 22953 chr5 102719072 102719176 + 0 NA Intergenic Intergenic -35659 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 8865 chr14 35356256 35356435 + 0 NA Intergenic Intergenic 48409 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 28028 chr8 73520700 73520804 + 0 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 100678 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 16490 chr2 156182345 156182392 + 0 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 72563 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 672 chr1 39098592 39098787 + 0 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 14522 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 8575 chr13 107258911 107259015 + 0 NA intron (NM_001080396, intron 1 of 2) MSTA|LTR|ERVL-MaLR 272285 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 30508 chrX 13734677 13734749 + 0 NA promoter-TSS (NM_001128835) promoter-TSS (NM_001128835) 0 NM_001330210 8481 Hs.6483 NM_003611 ENSG00000046651 OFD1 71-7A|CXorf5|JBTS10|RP23|SGBS2 OFD1, centriole and centriolar satellite protein protein-coding 10485 chr15 76994136 76994240 + 0 NA promoter-TSS (NR_135552) promoter-TSS (NR_135552) -492 NM_001321137 9051 Hs.129758 NM_003978 ENSG00000140368 PSTPIP1 CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP proline-serine-threonine phosphatase interacting protein 1 protein-coding 7644 chr12 110247665 110247805 + 0 NA Intergenic Intergenic -33492 NM_001681 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 18768 chr22 29838313 29838423 + 0 NA promoter-TSS (NM_032204) promoter-TSS (NM_032204) -64 NM_032204 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 26345 chr7 66205231 66205335 + 0 NA promoter-TSS (NM_003596) promoter-TSS (NM_003596) 11 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 15045 chr2 12759519 12759623 + 0 NA Intergenic Intergenic 22204 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 3806 chr10 68407214 68407318 + 0 NA promoter-TSS (NR_103475) promoter-TSS (NR_103475) 28 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 5858 chr11 93741502 93741601 + 0 NA promoter-TSS (NM_024116) promoter-TSS (NM_024116) -14 NM_024116 79101 Hs.355750 NM_024116 ENSG00000166012 TAF1D JOSD3|RAFI41|TAF(I)41|TAFI41 TATA-box binding protein associated factor, RNA polymerase I subunit D protein-coding 27932 chr8 62164829 62165022 + 0 NA Intergenic L1PB1|LINE|L1 -84017 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D Sodium/potassium transporting ATPase interacting 3 protein-coding 15380 chr2 38439028 38439132 + 0 NA Intergenic L2b|LINE|L2 -60496 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 29868 chr9 111599615 111599719 + 0 NA promoter-TSS (NM_012212) promoter-TSS (NM_012212) 188 NM_001146108 22949 Hs.584864 NM_012212 ENSG00000106853 PTGR1 LTB4DH|PGR1|ZADH3 prostaglandin reductase 1 protein-coding 19841 chr3 109640349 109640414 + 0 NA Intergenic Intergenic 37553 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 751 chr1 43172219 43172373 + 0 NA promoter-TSS (NM_001167965) promoter-TSS (NM_001167965) 19 NM_006824 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 22311 chr5 19531844 19531948 + 0 NA intron (NM_001291956, intron 11 of 14) intron (NM_001291956, intron 11 of 14) 354376 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 26732 chr7 101815295 101815368 + 0 NA promoter-TSS (NM_001202543) promoter-TSS (NM_001202543) -573 NM_001913 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 29406 chr9 84851993 84852166 + 0 NA intron (NM_001018064, intron 11 of 16) intron (NM_001018064, intron 11 of 16) 181702 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 1746 chr1 152786119 152786208 + 0 NA promoter-TSS (NM_178353) promoter-TSS (NM_178353) -114 NM_178353 353135 Hs.250236 NM_178353 ENSG00000186226 LCE1E LEP5 late cornified envelope 1E protein-coding 11853 chr16 89657761 89657865 + 0 NA promoter-TSS (NM_001083314) promoter-TSS (NM_001083314) 9 NM_001271907 124045 Hs.655171 NM_153025 ENSG00000167523 SPATA33 C16orf55 spermatogenesis associated 33 protein-coding 8580 chr13 108915816 108915944 + 0 NA intron (NM_001198950, intron 16 of 34) intron (NM_001198950, intron 16 of 34) 251423 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 17585 chr20 10578680 10578842 + 0 NA intron (NM_001009608, intron 4 of 7) L1MB8|LINE|L1 70934 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 4551 chr10 124069548 124069652 + 0 NA intron (NM_001270764, intron 1 of 7) intron (NM_001270764, intron 1 of 7) 22824 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 3356 chr10 17348891 17348971 + 0 NA intron (NR_144322, intron 4 of 6) intron (NR_144322, intron 4 of 6) -38005 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 18646 chr22 20320037 20320174 + 0 NA promoter-TSS (NM_033257) promoter-TSS (NM_033257) 0 NM_033257 85359 Hs.410965 NM_033257 ENSG00000128185 DGCR6L DGCR6 DiGeorge syndrome critical region gene 6-like protein-coding 23796 chr5 177554542 177554564 + 0 NA promoter-TSS (NM_001190946) promoter-TSS (NM_001190946) 32 NR_024019 54540 Hs.484289 NM_019057 ENSG00000146067 FAM193B IRIZIO family with sequence similarity 193 member B protein-coding 12312 chr17 31437375 31437575 + 0 NA intron (NM_032932, intron 3 of 14) intron (NM_032932, intron 3 of 14) 45851 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 5532 chr11 66720293 66720488 + 0 NA intron (NM_006946, intron 2 of 36) intron (NM_006946, intron 2 of 36) 1009 NM_006946 6712 Hs.26915 NM_006946 ENSG00000173898 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin beta, non-erythrocytic 2 protein-coding 10663 chr15 89379883 89380016 + 0 NA intron (NR_133001, intron 3 of 6) intron (NR_133001, intron 3 of 6) 1907 NR_015411 254559 Hs.136313 NR_015411 ENSG00000255571 MIR9-3HG LINC00925 MIR9-3 host gene ncRNA 10062 chr15 49866311 49866358 + 0 NA intron (NR_073597, intron 25 of 26) intron (NR_073597, intron 25 of 26) 245305 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 9249 chr14 67419047 67419151 + 0 NA Intergenic Intergenic -6899 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 907 chr1 54581750 54581888 + 0 NA intron (NM_015547, intron 1 of 16) intron (NM_015547, intron 1 of 16) 33685 NM_147161 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 26643 chr7 96709792 96709947 + 0 NA promoter-TSS (NM_006304) promoter-TSS (NM_006304) 22 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1, 26S proteasome complex subunit protein-coding 18465 chr21 30408945 30409049 + 0 NA Intergenic L1PA16|LINE|L1 12923 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 23033 chr5 113167020 113167105 + 0 NA intron (NM_001085377, intron 3 of 18) L3b|LINE|CR1 127853 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 mutated in colorectal cancers protein-coding 28456 chr8 116351458 116351617 + 0 NA Intergenic Intergenic -26478 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 26847 chr7 113637161 113637267 + 0 NA Intergenic Intergenic 281813 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 7257 chr12 71710412 71710586 + 0 NA Intergenic LTR78|LTR|ERV1 24401 NM_018279 55266 Hs.644802 NM_018279 ENSG00000139291 TMEM19 - transmembrane protein 19 protein-coding 1868 chr1 157138359 157138470 + 0 NA promoter-TSS (NM_005240) promoter-TSS (NM_005240) -29 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1|bA110J1.4 ETS variant 3 protein-coding 27146 chr7 142568592 142568696 + 0 NA Intergenic Intergenic -97655 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 25726 chr7 15136290 15136394 + 0 NA Intergenic HAL1ME|LINE|L1 -294892 NM_004080 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 24419 chr6 33577220 33577353 + 0 NA intron (NM_001188, intron 2 of 5) intron (NM_001188, intron 2 of 5) 3007 NM_001188 578 Hs.485139 NM_001188 ENSG00000030110 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2 antagonist/killer 1 protein-coding 24016 chr6 10383560 10383719 + 0 NA Intergenic CpG -28679 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 6925 chr12 46220019 46220061 + 0 NA intron (NM_001278390, intron 5 of 16) intron (NM_001278390, intron 5 of 16) 46455 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 3154 chr1 247857511 247857662 + 0 NA exon (NM_015431, exon 1 of 6) exon (NM_015431, exon 1 of 6) 387 NM_015431 25893 Hs.269151 NM_015431 ENSG00000162722 TRIM58 BIA2 tripartite motif containing 58 protein-coding 5812 chr11 87037827 87037956 + 0 NA promoter-TSS (NM_001168724) promoter-TSS (NM_001168724) 47 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 15698 chr2 66576193 66576195 + 0 NA intron (NR_110156, intron 1 of 5) CpG 2164 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 12006 chr17 6507669 6507773 + 0 NA intron (NM_001165966, intron 2 of 18) L2b|LINE|L2 48836 NM_001165966 83394 Hs.183983 NM_031220 ENSG00000091622 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 8725 chr14 23120907 23121051 + 0 NA Intergenic Intergenic -1368 NM_001805 1053 Hs.558308 NM_001805 ENSG00000092067 CEBPE C/EBP-epsilon|CRP1 CCAAT/enhancer binding protein epsilon protein-coding 25614 chr7 6009153 6009304 + 0 NA promoter-TSS (NM_000535) promoter-TSS (NM_000535) -23 NM_001326609 7965 Hs.301613 NM_006303 ENSG00000106305 AIMP2 JTV-1|JTV1|P38 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 protein-coding 20364 chr3 149247423 149247451 + 0 NA Intergenic Intergenic -25392 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin protein-coding 22592 chr5 59761183 59761209 + 0 NA intron (NM_001165899, intron 3 of 16) Tigger3b|DNA|TcMar-Tigger 7416 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 25784 chr7 18978210 18978314 + 0 NA intron (NM_178425, intron 24 of 24) intron (NM_178425, intron 24 of 24) 139410 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 8738 chr14 23567771 23567875 + 0 NA promoter-TSS (NM_001282475) promoter-TSS (NM_001282475) 13 NM_003917 8906 Hs.343244 NM_003917 ENSG00000213983 AP1G2 G2AD adaptor related protein complex 1 gamma 2 subunit protein-coding 20526 chr3 159324059 159324155 + 0 NA intron (NM_001197108, intron 1 of 6) MER89|LTR|ERV1 41461 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 13965 chr19 4867669 4867773 + 0 NA promoter-TSS (NM_001164189) promoter-TSS (NM_001164189) 47 NM_001164194 10226 Hs.140452 NM_005817 ENSG00000105355 PLIN3 M6PRBP1|PP17|TIP47 perilipin 3 protein-coding 12579 chr17 45171504 45171608 + 0 NA promoter-TSS (NR_135646) promoter-TSS (NR_135646) -71 NR_135646 105371795 Hs.569733 NR_135646 ENSG00000267288 LOC105371795 - uncharacterized LOC105371795 ncRNA 6920 chr12 45727730 45727824 + 0 NA non-coding (NR_028408, exon 1 of 1) non-coding (NR_028408, exon 1 of 1) 144 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 29167 chr9 70419594 70419745 + 0 NA Intergenic CpG -5012 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 23168 chr5 128539244 128539348 + 0 NA Intergenic Intergenic -1254 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 29906 chr9 113275538 113275680 + 0 NA promoter-TSS (NM_001322267) promoter-TSS (NM_001322267) -20 NM_139286 246184 Hs.727648 NM_139286 ENSG00000176386 CDC26 ANAPC12|APC12|C9orf17 cell division cycle 26 protein-coding 15024 chr2 11868208 11868331 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -31283 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 11405 chr16 56657517 56657665 + 0 NA promoter-TSS (NM_001301272) promoter-TSS (NM_001301272) -352 NM_001301272 4494 Hs.513626 NM_005949 ENSG00000198417 MT1F MT1 metallothionein 1F protein-coding 20818 chr3 184314542 184314685 + 0 NA promoter-TSS (NM_182917) promoter-TSS (NM_182917) 111 NM_001291157 1981 Hs.433750 NM_004953 ENSG00000114867 EIF4G1 EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18 eukaryotic translation initiation factor 4 gamma 1 protein-coding 17704 chr20 18507747 18507897 + 0 NA promoter-TSS (NM_001172745) promoter-TSS (NM_001172745) -141 NM_001172745 10483 Hs.369373 NM_006363 ENSG00000101310 SEC23B CDA-II|CDAII|CDAN2|CWS7|HEMPAS Sec23 homolog B, coat complex II component protein-coding 9095 chr14 58244742 58244883 + 0 NA promoter-TSS (NM_152132) promoter-TSS (NM_152132) 7 NM_152132 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 6314 chr11 128039811 128039915 + 0 NA Intergenic Intergenic 482447 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 11934 chr17 2965923 2965966 + 0 NA promoter-TSS (NR_110818) promoter-TSS (NR_110818) -49 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 9614 chr14 95507314 95507399 + 0 NA Intergenic Intergenic 26273 NR_003002 677768 Hs.448753 NR_003002 ENSG00000252481 SCARNA13 U93 small Cajal body-specific RNA 13 ncRNA 19730 chr3 98513224 98513368 + 0 NA Intergenic Intergenic 9770 NM_001040199 56650 Hs.531371 NM_019895 ENSG00000080822 CLDND1 C3orf4|GENX-3745 claudin domain containing 1 protein-coding 5819 chr11 88337655 88337785 + 0 NA promoter-TSS (NM_148170) promoter-TSS (NM_148170) 67 NM_001114173 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 18787 chr22 30592188 30592319 + 0 NA promoter-TSS (NM_014303) promoter-TSS (NM_014303) -313 NM_001243225 23481 Hs.517543 NM_014303 ENSG00000100029 PES1 PES pescadillo ribosomal biogenesis factor 1 protein-coding 26446 chr7 76178219 76178373 + 0 NA Intergenic Intergenic -23597 NM_001110199 222183 Hs.511025 NM_001039212 ENSG00000177679 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 29610 chr9 95313199 95313303 + 0 NA intron (NM_000136, intron 1 of 14) CpG 4003 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC Fanconi anemia complementation group C protein-coding 24714 chr6 53734637 53734741 + 0 NA Intergenic L1MEd|LINE|L1 -60291 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 18738 chr22 27718337 27718441 + 0 NA Intergenic Intergenic 83109 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 13996 chr19 6110635 6110772 + 0 NA promoter-TSS (NM_000635) promoter-TSS (NM_000635) -50 NM_134433 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 7613 chr12 108515084 108515249 + 0 NA promoter-TSS (NM_007076) promoter-TSS (NM_007076) -108 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 2810 chr1 224330391 224330489 + 0 NA promoter-TSS (NM_001243146) promoter-TSS (NM_001243146) -251 NM_206840 4931 Hs.497867 NM_002533 ENSG00000143748 NVL NVL2 nuclear VCP-like protein-coding 20907 chr3 189304507 189304628 + 0 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -63973 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 6704 chr12 18276151 18276255 + 0 NA intron (NM_001288772, intron 1 of 32) intron (NM_001288772, intron 1 of 32) 14663 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 22693 chr5 71455568 71455662 + 0 NA promoter-TSS (NM_018429) promoter-TSS (NM_018429) 0 NM_018429 55814 Hs.258272 NM_018429 ENSG00000145734 BDP1 HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein-coding 20102 chr3 128123832 128124013 + 0 NA promoter-TSS (NM_001319084) promoter-TSS (NM_001319084) -35 NM_001319084 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 24564 chr6 42404563 42404692 + 0 NA intron (NM_001297573, intron 2 of 17) intron (NM_001297573, intron 2 of 17) 47424 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 27973 chr8 66667233 66667383 + 0 NA promoter-TSS (NM_001204173) promoter-TSS (NM_001204173) -91 NM_025054 80124 Hs.632066 NM_025054 ENSG00000175073 VCPIP1 DUBA3|VCIP135 valosin containing protein interacting protein 1 protein-coding 26814 chr7 110224845 110224949 + 0 NA Intergenic Intergenic -264684 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 16133 chr2 111698921 111699110 + 0 NA Intergenic Intergenic 72119 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 9468 chr14 81219370 81219523 + 0 NA intron (NM_201595, intron 1 of 8) intron (NM_201595, intron 1 of 8) 1506 NM_001278940 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 4840 chr11 12090811 12090941 + 0 NA Intergenic Intergenic -19700 NM_001346299 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 21961 chr4 160026831 160026935 + 0 NA Intergenic L1M1|LINE|L1 759037 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 17634 chr20 13030102 13030259 + 0 NA intron (NM_018327, intron 1 of 11) intron (NM_018327, intron 1 of 11) 21201 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 14460 chr19 40576761 40576865 + 0 NA promoter-TSS (NM_138392) promoter-TSS (NM_138392) -38 NM_138392 92799 Hs.26506 NM_138392 ENSG00000160410 SHKBP1 PP203|Sb1 SH3KBP1 binding protein 1 protein-coding 22486 chr5 49601973 49602127 + 0 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 839350 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 30396 chr9 137612288 137612427 + 0 NA intron (NM_152285, intron 1 of 7) intron (NM_152285, intron 1 of 7) 6172 NR_122036 85026 Hs.522520 NM_032937 ENSG00000203993 ARRDC1-AS1 C9orf37 ARRDC1 antisense RNA 1 ncRNA 22446 chr5 41708292 41708396 + 0 NA Intergenic L1PA7|LINE|L1 -161686 NR_046635 100874002 Hs.375537 NR_046635 ENSG00000248668 OXCT1-AS1 - OXCT1 antisense RNA 1 ncRNA 6542 chr12 6904842 6904887 + 0 NA 5' UTR (NM_006992, exon 1 of 7) 5' UTR (NM_006992, exon 1 of 7) 131 NM_201650 10233 Hs.155586 NM_006992 ENSG00000010626 LRRC23 LRPB7 leucine rich repeat containing 23 protein-coding 29617 chr9 95857328 95857432 + 0 NA intron (NR_023390, intron 1 of 2) intron (NR_023390, intron 1 of 2) -18238 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 28994 chr9 23599198 23599211 + 0 NA intron (NR_121602, intron 11 of 27) MER103C|DNA|hAT-Charlie 73195 NR_121602 101929563 Hs.533220 NR_121602 LOC101929563 - uncharacterized LOC101929563 ncRNA 16138 chr2 111975192 111975303 + 0 NA intron (NM_006343, intron 6 of 18) intron (NM_006343, intron 6 of 18) 76633 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 1200 chr1 85062212 85062317 + 0 NA promoter-TSS (NM_001288563) promoter-TSS (NM_001288563) -34 NM_001288563 126820 Hs.97933 NM_145172 ENSG00000162643 WDR63 DIC3|NYD-SP29 WD repeat domain 63 protein-coding 16685 chr2 174487278 174487285 + 0 NA promoter-TSS (NM_001033045) promoter-TSS (NM_001033045) -193 NM_001267051 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 8406 chr13 79406212 79406332 + 0 NA promoter-TSS (NM_001286631) promoter-TSS (NM_001286631) -37 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 1413 chr1 100896815 100896830 + 0 NA intron (NM_133496, intron 2 of 10) intron (NM_133496, intron 2 of 10) 744 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 18510 chr21 36235331 36235403 + 0 NA intron (NM_005128, intron 15 of 36) intron (NM_005128, intron 15 of 36) 70826 NM_005128 9980 Hs.204575 NM_005128 ENSG00000142197 DOPEY2 21orf5|C21orf5 dopey family member 2 protein-coding 9959 chr15 41621432 41621523 + 0 NA Intergenic CpG -38935 NM_001080541 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MGA, MAX dimerization protein protein-coding 2107 chr1 176515343 176515447 + 0 NA intron (NM_020318, intron 1 of 22) intron (NM_020318, intron 1 of 22) 52224 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 28526 chr8 120445071 120445188 + 0 NA promoter-TSS (NM_022045) promoter-TSS (NM_022045) -269 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 20852 chr3 185796745 185796849 + 0 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 24334 NM_001291874 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 20711 chr3 177478662 177478796 + 0 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 36808 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 9395 chr14 75427915 75428040 + 0 NA promoter-TSS (NM_001135048) promoter-TSS (NM_001135048) 171 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 1856 chr1 156660120 156660224 + 0 NA TTS (NM_021948) TTS (NM_021948) 17225 NM_006617 10763 Hs.527971 NM_006617 ENSG00000132688 NES Nbla00170 nestin protein-coding 19463 chr3 48188485 48188638 + 0 NA promoter-TSS (NM_001789) promoter-TSS (NM_001789) -250 NM_201567 993 Hs.437705 NM_001789 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 19026 chr22 46514726 46514821 + 0 NA intron (NM_014246, intron 1 of 34) intron (NM_014246, intron 1 of 34) 22397 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 27972 chr8 66613379 66613468 + 0 NA promoter-TSS (NM_001080416) promoter-TSS (NM_001080416) -174 NM_001144755 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 29481 chr9 88344873 88344902 + 0 NA Intergenic MER21A|LTR|ERVL -43495 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 394 chr1 25538617 25538665 + 0 NA Intergenic Intergenic -4944 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 1371 chr1 96721663 96721772 + 0 NA promoter-TSS (NR_125356) promoter-TSS (NR_125356) 112 NM_001300989 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 23103 chr5 122312013 122312117 + 0 NA promoter-TSS (NM_001242935) promoter-TSS (NM_001242935) -4 NM_005460 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 22868 chr5 90529686 90529790 + 0 NA promoter-TSS (NM_001286812) promoter-TSS (NM_001286812) -154 NM_001286812 116068 Hs.136235 NM_198273 ENSG00000176018 LYSMD3 - LysM domain containing 3 protein-coding 5068 chr11 29018804 29018893 + 0 NA Intergenic Intergenic -541300 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 23807 chr5 178585645 178585749 + 0 NA intron (NM_173465, intron 1 of 28) intron (NM_173465, intron 1 of 28) 4858 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 24765 chr6 70312246 70312400 + 0 NA Intergenic Intergenic -9240 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 29654 chr9 97922181 97922313 + 0 NA intron (NM_001330725, intron 1 of 5) CpG 323 NM_001330725 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 21866 chr4 145557903 145558007 + 0 NA 3' UTR (NM_005900, exon 7 of 7) 3' UTR (NM_005900, exon 7 of 7) -40761 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 15751 chr2 69799254 69799358 + 0 NA intron (NM_001320700, intron 3 of 12) LTR19C|LTR|ERV1 -30300 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less, spermatogenesis associated 1 protein-coding 16406 chr2 142944408 142944512 + 0 NA intron (NM_001199241, intron 5 of 14) intron (NM_001199241, intron 5 of 14) 66834 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 20902 chr3 188950989 188951093 + 0 NA Intergenic MIRc|SINE|MIR -3402 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 25115 chr6 125946480 125946484 + 0 NA Intergenic L2|LINE|L2 -10233 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 13544 chr18 48998304 48998455 + 0 NA Intergenic Intergenic -47668 NM_001190821 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 13536 chr18 48873456 48873560 + 0 NA Intergenic MIRc|SINE|MIR 69299 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 23444 chr5 146732138 146732242 + 0 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 146595 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 29673 chr9 98342641 98342732 + 0 NA intron (NM_005458, intron 13 of 18) intron (NM_005458, intron 13 of 18) -86965 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 1236 chr1 86914436 86914558 + 0 NA promoter-TSS (NM_001134492) promoter-TSS (NM_001134492) -22 NR_144512 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 24801 chr6 75284822 75284924 + 0 NA promoter-TSS (NM_001143958) promoter-TSS (NM_001143958) 43 NM_018247 55754 Hs.108530 NM_018247 ENSG00000112697 TMEM30A C6orf67|CDC50A transmembrane protein 30A protein-coding 20541 chr3 159824335 159824473 + 0 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -15457 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 2413 chr1 202578278 202578391 + 0 NA intron (NM_032104, intron 12 of 12) intron (NM_032104, intron 12 of 12) 38220 NM_001197131 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 18670 chr22 21666155 21666340 + 0 NA intron (NM_148176, intron 1 of 20) CpG 263 NM_148176 23759 Hs.438587 NM_014337 ENSG00000100023 PPIL2 CYC4|CYP60|Cyp-60|UBOX7|hCyP-60 peptidylprolyl isomerase like 2 protein-coding 4400 chr10 114499947 114500050 + 0 NA intron (NM_001003407, intron 6 of 21) intron (NM_001003407, intron 6 of 21) 26928 NM_006720 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 5493 chr11 65720757 65720876 + 0 NA 5' UTR (NM_032193, exon 1 of 4) 5' UTR (NM_032193, exon 1 of 4) 122 NM_032193 84153 Hs.718438 NM_032193 ENSG00000172922 RNASEH2C AGS3|AYP1 ribonuclease H2 subunit C protein-coding 23062 chr5 115634790 115634929 + 0 NA Intergenic Intergenic -8680 NM_001164469 100302736 NM_001164468 ENSG00000251201 TMED7-TICAM2 - TMED7-TICAM2 readthrough protein-coding 26235 chr7 48089152 48089256 + 0 NA promoter-TSS (NR_109837) promoter-TSS (NR_109837) -8 NM_003364 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 11668 chr16 76670629 76670733 + 0 NA Intergenic L1M4b|LINE|L1 35683 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 28641 chr8 127661390 127661494 + 0 NA Intergenic Intergenic 72525 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 26159 chr7 43869572 43869720 + 0 NA promoter-TSS (NM_032014) promoter-TSS (NM_032014) -100 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 7037 chr12 52867836 52867856 + 0 NA Intergenic Intergenic -18852 NM_173352 196374 Hs.665267 NM_173352 ENSG00000170423 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 16180 chr2 113843584 113843717 + 0 NA intron (NR_110174, intron 2 of 4) intron (NR_110174, intron 2 of 4) -46284 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 ARP3 actin related protein 3 homolog protein-coding 1005 chr1 63593731 63593796 + 0 NA promoter-TSS (NM_001172819) promoter-TSS (NM_001172819) -46 NM_001172819 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 16187 chr2 117814450 117814645 + 0 NA promoter-TSS (NM_006773) promoter-TSS (NM_006773) -132 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 MrDb DEAD-box helicase 18 protein-coding 4280 chr10 103696542 103696646 + 0 NA intron (NM_014631, intron 5 of 13) intron (NM_014631, intron 5 of 13) -50185 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 11739 chr16 82063829 82063854 + 0 NA intron (NM_002153, intron 1 of 4) MER92B|LTR|ERV1 28588 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 4130 chr10 96043399 96043565 + 0 NA promoter-TSS (NM_019084) promoter-TSS (NM_019084) 80 NM_019084 54619 Hs.596479 NM_019084 ENSG00000107443 CCNJ bA690P14.1 cyclin J protein-coding 2089 chr1 174815164 174815259 + 0 NA intron (NM_001243765, intron 2 of 8) intron (NM_001243765, intron 2 of 8) 15314 NM_001243765 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 12702 chr17 51764507 51764606 + 0 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 394216 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 10690 chr15 90265589 90265735 + 0 NA promoter-TSS (NM_001033088) promoter-TSS (NM_001033088) -1 NM_001033088 51335 Hs.135471 NM_016645 ENSG00000182768 NGRN DSC92 neugrin, neurite outgrowth associated protein-coding 15661 chr2 64524105 64524232 + 0 NA promoter-TSS (NM_001002243) promoter-TSS (NM_001002243) -13 NR_136167 101927402 Hs.187018 NR_136167 ENSG00000260101 LOC101927402 - uncharacterized LOC101927402 ncRNA 23935 chr6 4776303 4776445 + 0 NA promoter-TSS (NM_004824) promoter-TSS (NM_004824) -72 NM_004824 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y-like protein-coding 10304 chr15 65902482 65902606 + 0 NA intron (NM_032445, intron 21 of 22) intron (NM_032445, intron 21 of 22) 33085 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 215 chr1 15799190 15799294 + 0 NA Intergenic Intergenic 8457 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 4410 chr10 114714587 114714691 + 0 NA intron (NM_001322885, intron 1 of 20) intron (NM_001322885, intron 1 of 20) -29984 NM_001003407 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 687 chr1 39902006 39902106 + 0 NA promoter-TSS (NM_001033081) promoter-TSS (NM_001033081) -41 NM_001033082 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog protein-coding 14210 chr19 16076256 16076385 + 0 NA promoter-TSS (NM_003290) promoter-TSS (NM_003290) -5 NM_003290 7171 Hs.631618 NM_003290 ENSG00000167460 TPM4 HEL-S-108 tropomyosin 4 protein-coding 9730 chr14 103715616 103715720 + 0 NA promoter-TSS (NM_001198953) promoter-TSS (NM_001198953) -76 NM_024071 79038 Hs.592322 NM_024071 ENSG00000100711 ZFYVE21 HCVP7TP1|ZF21 zinc finger FYVE-type containing 21 protein-coding 30722 chrX 49922445 49922637 + 0 NA promoter-TSS (NM_001272102) promoter-TSS (NM_001272102) -74 NM_001127898 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 19915 chr3 113830710 113830858 + 0 NA Intergenic L1MC4|LINE|L1 -8050 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 9229 chr14 65321537 65321641 + 0 NA Intergenic Intergenic 13594 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 15501 chr2 47034322 47034381 + 0 NA intron (NM_020458, intron 15 of 19) intron (NM_020458, intron 15 of 19) -92496 NM_001171511 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 20268 chr3 139559715 139559845 + 0 NA TTS (NM_178177) TTS (NM_178177) -19951 NM_001130993 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 11956 chr17 4394382 4394486 + 0 NA Intergenic Intergenic -27760 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 28141 chr8 86305508 86305612 + 0 NA Intergenic Intergenic -37205 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 5692 chr11 76825207 76825311 + 0 NA Intergenic Intergenic 33507 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 2336 chr1 199855683 199855787 + 0 NA Intergenic L2c|LINE|L2 -171867 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 21012 chr3 194141361 194141527 + 0 NA Intergenic CpG 5302 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 5872 chr11 94144447 94144583 + 0 NA intron (NM_015368, intron 1 of 4) intron (NM_015368, intron 1 of 4) 15587 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 4424 chr10 116774934 116775114 + 0 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) -32450 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 24650 chr6 47407815 47407919 + 0 NA Intergenic Intergenic -69922 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 826 chr1 46549777 46549842 + 0 NA intron (NM_001097611, intron 1 of 2) (CA)n|Simple_repeat|Simple_repeat 1406 NM_001097611 148930 Hs.350764 NM_182516 ENSG00000162456 KNCN Kino|L5 kinocilin protein-coding 3990 chr10 80460856 80461003 + 0 NA intron (NM_030927, intron 1 of 8) intron (NM_030927, intron 1 of 8) 6647 NM_001128309 81619 Hs.718943 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14 tetraspanin 14 protein-coding 28035 chr8 73888742 73888846 + 0 NA Intergenic MER50|LTR|ERV1 -9884 NR_073120 55284 Hs.128841 NM_018299 ENSG00000104343 UBE2W UBC-16|UBC16 ubiquitin conjugating enzyme E2 W protein-coding 17492 chr20 3818458 3818562 + 0 NA Intergenic Intergenic -2014 NM_001204446 55317 Hs.104806 NM_018347 ENSG00000125843 AP5S1 C20orf29 adaptor related protein complex 5 sigma 1 subunit protein-coding 7344 chr12 84509075 84509195 + 0 NA Intergenic MER50C|LTR|ERV1 403694 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 17364 chr2 238288849 238288935 + 0 NA promoter-TSS (NM_022817) promoter-TSS (NM_022817) -326 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 10069 chr15 50166357 50166486 + 0 NA Intergenic Intergenic -15775 NM_001159629 11001 Hs.11729 NM_003645 ENSG00000140284 SLC27A2 ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 solute carrier family 27 member 2 protein-coding 11986 chr17 5282276 5282337 + 0 NA promoter-TSS (NM_001291582) promoter-TSS (NM_001291582) 43 NM_004703 9135 Hs.584784 NM_004703 ENSG00000029725 RABEP1 RAB5EP|RABPT5 rabaptin, RAB GTPase binding effector protein 1 protein-coding 25385 chr6 155314645 155314749 + 0 NA promoter-TSS (NM_016020) promoter-TSS (NM_016020) -214 NM_016020 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 23612 chr5 158075436 158075540 + 0 NA Intergenic Intergenic -216313 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 2653 chr1 213465182 213465275 + 0 NA Intergenic LTR16|LTR|ERVL 413995 NM_001287219 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 25432 chr6 159789716 159789724 + 0 NA promoter-TSS (NM_030752) promoter-TSS (NM_030752) -17 NM_030752 6950 Hs.363137 NM_030752 ENSG00000120438 TCP1 CCT-alpha|CCT1|CCTa|D6S230E|TCP-1-alpha t-complex 1 protein-coding 12818 chr17 62724802 62724949 + 0 NA intron (NM_001288780, intron 8 of 10) intron (NM_001288780, intron 8 of 10) 81778 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 21877 chr4 146521900 146522044 + 0 NA promoter-TSS (NM_001317816) promoter-TSS (NM_001317816) -1 NM_001317816 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7 solute carrier family 10 member 7 protein-coding 19960 chr3 118469031 118469136 + 0 NA Intergenic Intergenic -172685 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 2548 chr1 209080430 209080534 + 0 NA Intergenic Intergenic -244974 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 13879 chr19 1905227 1905364 + 0 NA promoter-TSS (NM_001329533) promoter-TSS (NM_001329533) 81 NM_138422 113179 Hs.144980 NM_138422 ENSG00000213638 ADAT3 FWP005|MRT36|MST121|MSTP121|S863-5|TAD3 adenosine deaminase, tRNA specific 3 protein-coding 30128 chr9 126914665 126914812 + 0 NA promoter-TSS (NM_001322320) promoter-TSS (NM_001322320) -36 NM_001322322 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 15135 chr2 20071590 20071750 + 0 NA Intergenic Intergenic -19642 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 11466 chr16 66082106 66082210 + 0 NA Intergenic Intergenic -284449 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 29253 chr9 74771005 74771109 + 0 NA intron (NM_017662, intron 25 of 38) L2a|LINE|L2 116290 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 17888 chr20 33811158 33811281 + 0 NA promoter-TSS (NR_110623) promoter-TSS (NR_110623) -85 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 12746 chr17 57084967 57085117 + 0 NA promoter-TSS (NM_003488) promoter-TSS (NM_003488) -150 NM_003488 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 5088 chr11 31509643 31509796 + 0 NA promoter-TSS (NM_001288725) promoter-TSS (NM_001288725) -10 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 30574 chrX 24025372 24025529 + 0 NA intron (NM_030624, intron 1 of 3) CpG-29535 1736 NM_030624 80311 Hs.495854 NM_030624 ENSG00000174010 KLHL15 HEL-S-305 kelch like family member 15 protein-coding 14626 chr19 47624116 47624245 + 0 NA intron (NM_015711, intron 1 of 14) intron (NM_015711, intron 1 of 14) 15984 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 4090 chr10 93437325 93437486 + 0 NA intron (NM_133337, intron 3 of 52) intron (NM_133337, intron 3 of 52) 44912 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 19508 chr3 49939928 49940098 + 0 NA promoter-TSS (NM_005777) promoter-TSS (NM_005777) -31 NM_005777 10180 Hs.696735 NM_005777 ENSG00000004534 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 30320 chr9 133417980 133418134 + 0 NA promoter-TSS (NM_001279349) promoter-TSS (NM_001279349) 39 NR_103996 57109 Hs.438409 NM_020385 ENSG00000148300 REXO4 REX4|XPMC2|XPMC2H REX4 homolog, 3'-5' exonuclease protein-coding 7878 chr12 127166127 127166273 + 0 NA Intergenic (CCGAGGCCGA)n|Simple_repeat|Simple_repeat -105803 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 26683 chr7 99504566 99504718 + 0 NA promoter-TSS (NM_001318083) promoter-TSS (NM_001318083) -2 NM_001318082 23660 Hs.110839 NM_014569 ENSG00000196652 ZKSCAN5 ZFP-95|ZFP95|ZNF914|ZSCAN37 zinc finger with KRAB and SCAN domains 5 protein-coding 16761 chr2 181203520 181203683 + 0 NA intron (NR_130784, intron 1 of 4) ERVL-B4-int|LTR|ERVL 79764 NR_130784 101927156 Hs.580074 NR_130784 ENSG00000234663 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 16299 chr2 128374236 128374389 + 0 NA Intergenic Intergenic -55715 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 730 chr1 42165932 42166055 + 0 NA Intergenic Intergenic -1269 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 21913 chr4 152709835 152709980 + 0 NA Intergenic Intergenic -29742 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 17925 chr20 35451357 35451461 + 0 NA intron (NM_001319138, intron 1 of 3) intron (NM_001319138, intron 1 of 3) 2688 NR_031620 100302125 NR_031620 ENSG00000221763 MIR1289-1 MIRN1289-1|hsa-mir-1289-1 microRNA 1289-1 ncRNA 13529 chr18 48389022 48389176 + 0 NA intron (NM_001318841, intron 1 of 4) intron (NM_001318841, intron 1 of 4) 20323 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 921 chr1 55429296 55429446 + 0 NA Intergenic Intergenic 203730 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 17597 chr20 10849263 10849335 + 0 NA Intergenic L2c|LINE|L2 59973 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 13999 chr19 6361380 6361530 + 0 NA promoter-TSS (NM_006012) promoter-TSS (NM_006012) 3 NM_006012 8192 Hs.515092 NM_006012 ENSG00000125656 CLPP DFNB81|PRLTS3 caseinolytic mitochondrial matrix peptidase proteolytic subunit protein-coding 16126 chr2 111068549 111068715 + 0 NA intron (NM_001142807, intron 16 of 17) intron (NM_001142807, intron 16 of 17) 46956 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 13823 chr18 79988549 79988692 + 0 NA promoter-TSS (NM_001303471) promoter-TSS (NM_001303471) -28 NR_131175 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 30839 chrX 74614611 74614748 + 0 NA promoter-TSS (NM_016120) promoter-TSS (NM_016120) -53 NM_016120 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12 ring finger protein, LIM domain interacting protein-coding 28745 chr8 134892704 134892820 + 0 NA Intergenic L1MB7|LINE|L1 42827 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 9186 chr14 63677999 63678117 + 0 NA Intergenic LTR47A2|LTR|ERVL -36135 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 10930 chr16 3503671 3503812 + 0 NA intron (NM_001330454, intron 1 of 12) AluJr|SINE|Alu 2796 NM_015041 23059 Hs.155995 NM_015041 ENSG00000103351 CLUAP1 CFAP22|FAP22|IFT38 clusterin associated protein 1 protein-coding 994 chr1 62230897 62231028 + 0 NA Intergenic Intergenic 36160 NM_019079 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 30925 chrX 106726621 106726725 + 0 NA promoter-TSS (NM_194463) promoter-TSS (NM_194463) 9 NM_194463 79589 Hs.496542 NM_024539 ENSG00000133135 RNF128 GRAIL ring finger protein 128, E3 ubiquitin protein ligase protein-coding 30933 chrX 107571747 107571851 + 0 NA intron (NM_032428, intron 13 of 15) intron (NM_032428, intron 13 of 15) -25978 NR_046750 100874122 Hs.600967 NR_046750 ENSG00000227610 FRMPD3-AS1 - FRMPD3 antisense RNA 1 ncRNA 29548 chr9 92325605 92325776 + 0 NA promoter-TSS (NM_001256394) promoter-TSS (NM_001256394) -96 NM_001256394 55035 Hs.442199 NM_017948 ENSG00000198000 NOL8 C9orf34|NOP132|bA62C3.3|bA62C3.4 nucleolar protein 8 protein-coding 29923 chr9 114385615 114385719 + 0 NA intron (NM_030767, intron 1 of 21) intron (NM_030767, intron 1 of 21) 2296 NM_001317950 80709 Hs.494895 NM_030767 ENSG00000106948 AKNA - AT-hook transcription factor protein-coding 27783 chr8 48420675 48420779 + 0 NA Intergenic Intergenic -130840 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 19178 chr3 13106653 13106757 + 0 NA Intergenic Intergenic -33588 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 9940 chr15 40823847 40823951 + 0 NA intron (NM_001130143, intron 1 of 4) FLAM_C|SINE|Alu 4810 NM_017726 54866 Hs.192927 NM_017726 ENSG00000166143 PPP1R14D CPI17-like|GBPI-1|GBPI1 protein phosphatase 1 regulatory inhibitor subunit 14D protein-coding 6847 chr12 32892007 32892111 + 0 NA intron (NM_001005242, intron 1 of 12) intron (NM_001005242, intron 1 of 12) 4787 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 23865 chr6 1335576 1335681 + 0 NA Intergenic Intergenic 23188 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 24909 chr6 89638724 89638793 + 0 NA promoter-TSS (NR_028493) promoter-TSS (NR_028493) -3 NM_020466 57226 Hs.177275 NM_020466 ENSG00000083099 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 2788 chr1 223639294 223639479 + 0 NA intron (NM_001143962, intron 2 of 20) intron (NM_001143962, intron 2 of 20) 26348 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 22805 chr5 82166000 82166104 + 0 NA intron (NM_001131028, intron 5 of 8) intron (NM_001131028, intron 5 of 8) 112364 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 S23 ribosomal protein S23 protein-coding 12720 chr17 55264817 55265016 + 0 NA promoter-TSS (NM_002126) promoter-TSS (NM_002126) -44 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF, PAR bZIP transcription factor protein-coding 1523 chr1 112464557 112464730 + 0 NA Intergenic Intergenic -1898 NM_004185 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 26972 chr7 128259742 128259846 + 0 NA Intergenic LTR8|LTR|ERV1 18516 NM_000230 3952 Hs.194236 NM_000230 ENSG00000174697 LEP LEPD|OB|OBS leptin protein-coding 8972 chr14 50231908 50232012 + 0 NA promoter-TSS (NM_006939) promoter-TSS (NM_006939) -267 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 5613 chr11 71299404 71299562 + 0 NA Intergenic Intergenic -74687 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 6405 chr11 134026669 134026773 + 0 NA Intergenic Intergenic -5551 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 3578 chr10 35307019 35307167 + 0 NA intron (NM_181698, intron 3 of 11) MIR|SINE|MIR -29781 NM_145012 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 24445 chr6 35342332 35342533 + 0 NA promoter-TSS (NM_006238) promoter-TSS (NM_006238) -126 NM_001171820 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 15031 chr2 12284617 12284721 + 0 NA intron (NR_110196, intron 3 of 5) L1MB5|LINE|L1 85539 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 19317 chr3 32570850 32570872 + 0 NA promoter-TSS (NM_016141) promoter-TSS (NM_016141) 13 NM_016141 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 15867 chr2 80887925 80888103 + 0 NA Intergenic LTR72B|LTR|ERV1 574635 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CT114|CTNR catenin alpha 2 protein-coding 27391 chr8 11510950 11511054 + 0 NA intron (NM_001330465, intron 1 of 11) intron (NM_001330465, intron 1 of 11) 16990 NM_001715 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 10822 chr15 101251926 101252075 + 0 NA promoter-TSS (NM_014918) promoter-TSS (NM_014918) -68 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 6546 chr12 6946355 6946476 + 0 NA promoter-TSS (NM_080548) promoter-TSS (NM_080548) -162 NM_080548 5777 Hs.63489 NM_002831 ENSG00000111679 PTPN6 HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1 protein tyrosine phosphatase, non-receptor type 6 protein-coding 27155 chr7 142913174 142913357 + 0 NA intron (NM_019841, intron 12 of 14) intron (NM_019841, intron 12 of 14) 20458 NM_019841 56302 Hs.283369 NM_019841 ENSG00000127412 TRPV5 CAT2|ECAC1|OTRPC3 transient receptor potential cation channel subfamily V member 5 protein-coding 13230 chr18 3652900 3653025 + 0 NA intron (NM_001003809, intron 4 of 9) intron (NM_001003809, intron 4 of 9) 49225 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 29326 chr9 78707732 78707836 + 0 NA Intergenic HAL1ME|LINE|L1 410709 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 11528 chr16 68520682 68520835 + 0 NA Intergenic Intergenic -18455 NM_001305207 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 8130 chr13 38409938 38410042 + 0 NA Intergenic Intergenic 60219 NM_001286703 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20 ubiquitin fold modifier 1 protein-coding 9578 chr14 93043569 93043723 + 0 NA intron (NM_001142593, intron 3 of 10) intron (NM_001142593, intron 3 of 10) -23806 NR_002808 319085 Hs.612888 NR_002808 ENSG00000258730 ITPK1-AS1 C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203 ITPK1 antisense RNA 1 ncRNA 15375 chr2 38146979 38147093 + 0 NA intron (NR_027252, intron 2 of 2) L2a|LINE|L2 15931 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 1091 chr1 68232461 68232565 + 0 NA promoter-TSS (NM_001002292) promoter-TSS (NM_001002292) 33 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 wntless Wnt ligand secretion mediator protein-coding 15990 chr2 97870621 97870725 + 0 NA intron (NM_015348, intron 4 of 40) intron (NM_015348, intron 4 of 40) 125218 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 28490 chr8 118415049 118415202 + 0 NA intron (NM_001101676, intron 3 of 4) intron (NM_001101676, intron 3 of 4) -205876 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 27540 chr8 23472479 23472628 + 0 NA Intergenic Intergenic -14822 NM_001128930 9583 Hs.444389 NM_004901 ENSG00000197217 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 23715 chr5 172187227 172187301 + 0 NA intron (NM_005990, intron 1 of 18) intron (NM_005990, intron 1 of 18) 1078 NM_005990 6793 Hs.744005 NM_005990 ENSG00000072786 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 31026 chrX 120630097 120630286 + 0 NA promoter-TSS (NM_001011551) promoter-TSS (NM_001011551) -41 NM_152692 29071 Hs.643920 NM_152692 ENSG00000171155 C1GALT1C1 C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS C1GALT1 specific chaperone 1 protein-coding 21170 chr4 10006378 10006473 + 0 NA intron (NM_001001290, intron 3 of 12) intron (NM_001001290, intron 3 of 12) 15065 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 9620 chr14 96224884 96224988 + 0 NA intron (NM_000623, intron 1 of 2) intron (NM_000623, intron 1 of 2) 20138 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 4594 chr10 126905289 126905469 + 0 NA promoter-TSS (NM_001290223) promoter-TSS (NM_001290223) -30 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 1962 chr1 163035871 163035998 + 0 NA Intergenic Intergenic -32672 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G-protein signaling 4 protein-coding 489 chr1 28877279 28877410 + 0 NA Intergenic Intergenic -9747 NM_001166005 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 22388 chr5 37272687 37272844 + 0 NA Intergenic LTR40b|LTR|ERVL -23337 NM_023073 65250 Hs.586199 NM_023073 ENSG00000197603 C5orf42 Hug|JBTS17|OFD6 chromosome 5 open reading frame 42 protein-coding 30478 chrX 9911659 9911851 + 0 NA promoter-TSS (NM_001320663) promoter-TSS (NM_001320663) -617 NM_001320664 357 Hs.567236 NM_001649 ENSG00000146950 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 29056 chr9 34523042 34523217 + 0 NA promoter-TSS (NM_198573) promoter-TSS (NM_198573) -90 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 25054 chr6 116571235 116571344 + 0 NA promoter-TSS (NM_015952) promoter-TSS (NM_015952) -78 NM_015952 51389 Hs.532164 NM_015952 ENSG00000111832 RWDD1 CGI-24|PTD013 RWD domain containing 1 protein-coding 21228 chr4 21467628 21467732 + 0 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -2922 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 2819 chr1 224572136 224572194 + 0 NA intron (NR_136297, intron 2 of 6) MER54A|LTR|ERVL -44312 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 23205 chr5 132295316 132295420 + 0 NA intron (NM_003059, intron 1 of 9) intron (NM_003059, intron 1 of 9) 916 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 21117 chr4 2364879 2364930 + 0 NA promoter-TSS (NM_001172659) promoter-TSS (NM_001172659) -27 NM_001172659 57732 Hs.292056 NM_020972 ENSG00000159733 ZFYVE28 LST2|LYST2 zinc finger FYVE-type containing 28 protein-coding 17122 chr2 219286508 219286653 + 0 NA 3' UTR (NM_001039550, exon 10 of 10) 3' UTR (NM_001039550, exon 10 of 10) 7262 NM_006736 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 9120 chr14 59576746 59576837 + 0 NA promoter-TSS (NM_001164399) promoter-TSS (NM_001164399) 40 NM_001164399 729665 Hs.29706 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 2233 chr1 184930733 184930837 + 0 NA intron (NM_052966, intron 1 of 13) intron (NM_052966, intron 1 of 13) 43801 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 FAM129A C1orf24|GIG39|NIBAN family with sequence similarity 129 member A protein-coding 26210 chr7 46764234 46764363 + 0 NA Intergenic MER89|LTR|ERV1 -67176 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 622 chr1 36134933 36135100 + 0 NA Intergenic Intergenic -9932 NM_005202 1296 Hs.353001 NM_005202 ENSG00000171812 COL8A2 FECD|FECD1|PPCD|PPCD2 collagen type VIII alpha 2 chain protein-coding 23554 chr5 151771753 151771791 + 0 NA promoter-TSS (NR_132346) promoter-TSS (NR_132346) -143 NM_005754 10146 Hs.3353 NM_005754 ENSG00000145907 G3BP1 G3BP|HDH-VIII G3BP stress granule assembly factor 1 protein-coding 2256 chr1 189970462 189970566 + 0 NA Intergenic Intergenic 505496 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 10639 chr15 87752633 87752737 + 0 NA Intergenic Intergenic 175756 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 5718 chr11 79156096 79156200 + 0 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 245961 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 5768 chr11 85647931 85648047 + 0 NA promoter-TSS (NM_001244735) promoter-TSS (NM_001244735) 70 NM_001244735 84233 Hs.533725 NM_032273 ENSG00000171202 TMEM126A OPA7 transmembrane protein 126A protein-coding 2057 chr1 169893928 169894066 + 0 NA promoter-TSS (NM_020423) promoter-TSS (NM_020423) -38 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 12184 chr17 18315008 18315112 + 0 NA promoter-TSS (NM_001320759) promoter-TSS (NM_001320759) 32 NM_001320759 7156 Hs.592115 NM_004618 ENSG00000177302 TOP3A TOP3|ZGRF7 topoisomerase (DNA) III alpha protein-coding 25223 chr6 138988217 138988362 + 0 NA promoter-TSS (NM_001128617) promoter-TSS (NM_001128617) -28 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 21789 chr4 128061156 128061269 + 0 NA promoter-TSS (NM_001278604) promoter-TSS (NM_001278604) -54 NM_018078 55132 Hs.657067 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 23176 chr5 129904454 129904558 + 0 NA promoter-TSS (NM_175856) promoter-TSS (NM_175856) -324 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 23127 chr5 124935940 124936044 + 0 NA Intergenic MER21C|LTR|ERVL -100839 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 31149 chrX 150983183 150983324 + 0 NA promoter-TSS (NM_001301229) promoter-TSS (NM_001301229) -22 NM_001301229 3149 Hs.19114 NM_005342 ENSG00000029993 HMGB3 HMG-2a|HMG-4|HMG2A|HMG4 high mobility group box 3 protein-coding 20199 chr3 134374451 134374567 + 0 NA promoter-TSS (NM_001278685) promoter-TSS (NM_001278685) 76 NM_001278685 51421 Hs.426312 NM_016201 ENSG00000114019 AMOTL2 LCCP angiomotin like 2 protein-coding 13782 chr18 74598101 74598151 + 0 NA promoter-TSS (NR_024484) promoter-TSS (NR_024484) -291 NR_024484 400657 Hs.61508 NM_001008234 ENSG00000264247 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 10567 chr15 82262666 82262811 + 0 NA promoter-TSS (NM_001322845) promoter-TSS (NM_001322845) 25 NM_024580 79631 Hs.459114 NM_024580 ENSG00000140598 EFL1 EFTUD1|FAM42A|HsT19294|RIA1 elongation factor like GTPase 1 protein-coding 10640 chr15 87816972 87817076 + 0 NA Intergenic Intergenic 240095 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 8920 chr14 39175031 39175124 + 0 NA promoter-TSS (NM_002687) promoter-TSS (NM_002687) -106 NM_002687 5411 Hs.409965 NM_002687 ENSG00000100941 PNN DRS|DRSP|SDK3|memA pinin, desmosome associated protein protein-coding 5089 chr11 32081236 32081319 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -9654 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 29332 chr9 78932990 78933094 + 0 NA Intergenic L2|LINE|L2 212624 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 27509 chr8 22383011 22383115 + 0 NA intron (NM_001135153, intron 1 of 8) intron (NM_001135153, intron 1 of 8) 15526 NM_001135153 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 22318 chr5 20572723 20572900 + 0 NA intron (NM_001291956, intron 1 of 14) intron (NM_001291956, intron 1 of 14) 3062 NM_001291956 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 7348 chr12 84856249 84856353 + 0 NA Intergenic L1MA2|LINE|L1 56528 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 2563 chr1 209428677 209428785 + 0 NA promoter-TSS (NM_001104548) promoter-TSS (NM_001104548) -92 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene protein-coding 29941 chr9 114903049 114903073 + 0 NA 3' UTR (NM_001244, exon 4 of 4) 3' UTR (NM_001244, exon 4 of 4) 27534 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 23140 chr5 126423342 126423393 + 0 NA 5' UTR (NM_001146320, exon 1 of 13) 5' UTR (NM_001146320, exon 1 of 13) 190 NM_023927 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 16251 chr2 121888289 121888393 + 0 NA Intergenic Intergenic 132796 NR_048557 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 7208 chr12 63152205 63152309 + 0 NA 5' UTR (NM_000706, exon 1 of 2) 5' UTR (NM_000706, exon 1 of 2) 553 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 18840 chr22 36239570 36239674 + 0 NA promoter-TSS (NM_030882) promoter-TSS (NM_030882) 21 NM_030882 23780 Hs.474740 NM_030882 ENSG00000128335 APOL2 APOL-II|APOL3 apolipoprotein L2 protein-coding 18202 chr20 50931647 50931790 + 0 NA promoter-TSS (NM_001282531) promoter-TSS (NM_001282531) -505 NM_015339 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 4333 chr10 110082118 110082222 + 0 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -73789 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 28672 chr8 129984474 129984578 + 0 NA intron (NR_046361, intron 1 of 13) MIR3|SINE|MIR 23927 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 29513 chr9 90755841 90755993 + 0 NA Intergenic HERVE-int|LTR|ERV1 -45763 NM_003177 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 4461 chr10 119003806 119003825 + 0 NA Intergenic Intergenic -25901 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 270 chr1 18902839 18902971 + 0 NA promoter-TSS (NM_003748) promoter-TSS (NM_003748) -106 NM_003748 8659 Hs.77448 NM_003748 ENSG00000159423 ALDH4A1 ALDH4|P5CD|P5CDh aldehyde dehydrogenase 4 family member A1 protein-coding 17417 chr20 324511 324640 + 0 NA promoter-TSS (NM_006943) promoter-TSS (NM_006943) 677 NR_109990 100507459 Hs.659689 NR_109990 NRSN2-AS1 - NRSN2 antisense RNA 1 ncRNA 12218 chr17 21275833 21275937 + 0 NA Intergenic CpG -8771 NM_001316332 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 6870 chr12 39103673 39103777 + 0 NA Intergenic Intergenic -198107 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 24852 chr6 82397051 82397155 + 0 NA Intergenic Intergenic 32859 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 19001 chr22 45309606 45309804 + 0 NA promoter-TSS (NM_017911) promoter-TSS (NM_017911) -199 NM_017911 55007 Hs.265018 NM_017911 ENSG00000100376 FAM118A C22orf8 family with sequence similarity 118 member A protein-coding 17658 chr20 14858262 14858366 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) 71204 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 15413 chr2 41321489 41321593 + 0 NA Intergenic Intergenic -556014 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 6791 chr12 27822215 27822243 + 0 NA Intergenic Intergenic 41975 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 20690 chr3 175737736 175737840 + 0 NA intron (NM_207015, intron 12 of 13) intron (NM_207015, intron 12 of 13) 38545 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 6517 chr12 6452044 6452130 + 0 NA promoter-TSS (NR_015382) promoter-TSS (NR_015382) 76 NM_018009 55080 Hs.504597 NM_018009 ENSG00000139192 TAPBPL TAPBP-R|TAPBPR TAP binding protein like protein-coding 21360 chr4 52318102 52318206 + 0 NA Intergenic LTR43B|LTR|ERV1 266823 NM_001297608 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 28594 chr8 125273215 125273327 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -157050 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 20433 chr3 153043148 153043275 + 0 NA Intergenic Intergenic -119001 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 26150 chr7 43583006 43583086 + 0 NA promoter-TSS (NM_004760) promoter-TSS (NM_004760) -47 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 14190 chr19 14551476 14551624 + 0 NA intron (NM_001321170, intron 2 of 13) intron (NM_001321170, intron 2 of 13) 20527 NM_004146 4713 Hs.532853 NM_004146 ENSG00000099795 NDUFB7 B18|CI-B18 NADH:ubiquinone oxidoreductase subunit B7 protein-coding 2840 chr1 225882327 225882482 + 0 NA 5' UTR (NM_014698, exon 1 of 25) 5' UTR (NM_014698, exon 1 of 25) 316 NM_014698 9725 Hs.119387 NM_014698 ENSG00000196187 TMEM63A KIAA0792 transmembrane protein 63A protein-coding 1602 chr1 119279562 119279635 + 0 NA Intergenic Intergenic -89178 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 4226 chr10 101031166 101031298 + 0 NA promoter-TSS (NM_024895) promoter-TSS (NM_024895) -7 NM_030971 81855 Hs.283844 NM_030971 ENSG00000107819 SFXN3 BA108L7.2|SFX3 sideroflexin 3 protein-coding 28202 chr8 93916776 93916918 + 0 NA promoter-TSS (NR_039602) promoter-TSS (NR_039602) -8 NM_018444 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 28850 chr8 144768402 144768494 + 0 NA Intergenic Intergenic -12863 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 20204 chr3 134485674 134485824 + 0 NA promoter-TSS (NM_001042383) promoter-TSS (NM_001042383) 16 NM_001042383 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 5139 chr11 34600636 34600740 + 0 NA Intergenic Intergenic -20353 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 12374 chr17 35541061 35541216 + 0 NA Intergenic Intergenic -12067 NR_138031 107985033 NR_138031 LOC107985033 - uncharacterized LOC107985033 ncRNA 1399 chr1 99850038 99850153 + 0 NA promoter-TSS (NM_000642) promoter-TSS (NM_000642) 11 NM_000642 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 18356 chr20 60041872 60042024 + 0 NA Intergenic LTR5_Hs|LTR|ERVK -13977 NM_001302815 284756 Hs.335319 NM_173644 C20orf197 - chromosome 20 open reading frame 197 protein-coding 7540 chr12 102120398 102120426 + 0 NA promoter-TSS (NM_024057) promoter-TSS (NM_024057) 241 NM_017915 55010 Hs.330663 NM_017915 ENSG00000185480 PARPBP AROM|C12orf48|PARI PARP1 binding protein protein-coding 12727 chr17 55584207 55584332 + 0 NA Intergenic MIR|SINE|MIR 138595 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 29401 chr9 84752006 84752092 + 0 NA exon (NM_001291937, exon 14 of 15) exon (NM_001291937, exon 14 of 15) 81672 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 26504 chr7 82559566 82559670 + 0 NA Intergenic Intergenic -115812 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 103 chr1 7572824 7572928 + 0 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -198393 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 13306 chr18 22466132 22466292 + 0 NA Intergenic Intergenic -48297 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 8228 chr13 46796586 46796738 + 0 NA intron (NM_001984, intron 1 of 9) CpG 570 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 8875 chr14 35826213 35826365 + 0 NA promoter-TSS (NM_032352) promoter-TSS (NM_032352) -102 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 breast cancer metastasis-suppressor 1-like protein-coding 20555 chr3 160755539 160755643 + 0 NA promoter-TSS (NM_139245) promoter-TSS (NM_139245) -613 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 19649 chr3 69294631 69294735 + 0 NA intron (NM_015123, intron 4 of 22) intron (NM_015123, intron 4 of 22) 91621 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 10473 chr15 75723938 75724068 + 0 NA promoter-TSS (NM_175881) promoter-TSS (NM_175881) 25 NM_175881 161753 Hs.144348 NM_175881 ENSG00000182950 ODF3L1 - outer dense fiber of sperm tails 3 like 1 protein-coding 4528 chr10 122089764 122089868 + 0 NA intron (NM_001291877, intron 5 of 19) intron (NM_001291877, intron 5 of 19) -23223 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 26861 chr7 115973557 115973661 + 0 NA intron (NM_001018058, intron 2 of 6) intron (NM_001018058, intron 2 of 6) -5296 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 6039 chr11 109940897 109941001 + 0 NA Intergenic L2c|LINE|L2 -152412 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 18268 chr20 54180084 54180156 + 0 NA Intergenic Intergenic -6143 NM_001128915 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 28314 chr8 100906940 100906983 + 0 NA Intergenic Intergenic 43610 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 18691 chr22 23894303 23894454 + 0 NA promoter-TSS (NM_002415) promoter-TSS (NM_002415) 0 NM_002415 4282 Hs.407995 NM_002415 ENSG00000240972 MIF GIF|GLIF|MMIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) protein-coding 9151 chr14 61476767 61476844 + 0 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 93389 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 16495 chr2 156400378 156400528 + 0 NA Intergenic CpG -35000 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 30132 chr9 127166973 127167035 + 0 NA intron (NM_001190728, intron 8 of 16) L2|LINE|L2 -44239 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 2534 chr1 208049087 208049177 + 0 NA intron (NM_025179, intron 17 of 31) MER74A|LTR|ERVL -137794 NM_001773 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 30507 chrX 13689108 13689136 + 0 NA promoter-TSS (NM_001195328) promoter-TSS (NM_001195328) 1 NM_004251 9367 Hs.495704 NM_004251 ENSG00000123595 RAB9A RAB9 RAB9A, member RAS oncogene family protein-coding 5525 chr11 66616454 66616597 + 0 NA promoter-TSS (NM_001198836) promoter-TSS (NM_001198836) -57 NM_001198846 100526737 Hs.523822 NM_001198845 ENSG00000248643 RBM14-RBM4 COAZ RBM14-RBM4 readthrough protein-coding 30809 chrX 70452539 70452643 + 0 NA TTS (NR_046586) TTS (NR_046586) 286 NM_020730 1741 Hs.721586 NM_020730 ENSG00000082458 DLG3 MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR discs large MAGUK scaffold protein 3 protein-coding 29255 chr9 74887106 74887192 + 0 NA intron (NM_017662, intron 1 of 38) intron (NM_017662, intron 1 of 38) 198 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 20940 chr3 190345218 190345245 + 0 NA Intergenic Intergenic -22785 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 10854 chr16 1303453 1303544 + 0 NA Intergenic Intergenic -5655 NM_194261 7329 Hs.302903 NM_003345 ENSG00000103275 UBE2I C358B7.1|P18|UBC9 ubiquitin conjugating enzyme E2 I protein-coding 6772 chr12 26884973 26885030 + 0 NA Intergenic LTR41B|LTR|ERVL -51803 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 6173 chr11 118928028 118928157 + 0 NA Intergenic Intergenic -17188 NM_182557 283149 Hs.414740 NM_182557 ENSG00000186174 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 5500 chr11 65900566 65900643 + 0 NA promoter-TSS (NM_001300844) promoter-TSS (NM_001300844) -78 NM_005438 8061 Hs.283565 NM_005438 ENSG00000175592 FOSL1 FRA|FRA1|fra-1 FOS like 1, AP-1 transcription factor subunit protein-coding 10760 chr15 95019074 95019178 + 0 NA Intergenic Intergenic 163763 NR_077061 440311 Hs.745156 NR_077061 ENSG00000260521 LOC440311 - glioma tumor suppressor candidate region gene 2 pseudogene pseudo 20695 chr3 176767482 176767656 + 0 NA Intergenic L1M1|LINE|L1 49432 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 7799 chr12 122400550 122400679 + 0 NA TTS (NR_045382) TTS (NR_045382) 5072 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 23428 chr5 145854823 145854927 + 0 NA Intergenic Intergenic 18093 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin and cysteine rich domain containing 2 protein-coding 16828 chr2 190648786 190648803 + 0 NA promoter-TSS (NM_005966) promoter-TSS (NM_005966) -101 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 3926 chr10 75251156 75251260 + 0 NA Intergenic Intergenic -15196 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 27954 chr8 65645092 65645232 + 0 NA intron (NM_014637, intron 1 of 7) CpG 509 NM_014637 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 11202 chr16 29961696 29961800 + 0 NA promoter-TSS (NM_001083613) promoter-TSS (NM_001083613) -282 NM_001083613 124446 Hs.460574 NM_194280 ENSG00000149932 TMEM219 IGFBP-3R transmembrane protein 219 protein-coding 26835 chr7 112450781 112450947 + 0 NA intron (NR_120333, intron 1 of 11) CpG 356 NR_120333 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 25949 chr7 29178335 29178439 + 0 NA intron (NM_001293069, intron 2 of 13) L2b|LINE|L2 -16118 NM_004067 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 15783 chr2 71331658 71331832 + 0 NA promoter-TSS (NM_014497) promoter-TSS (NM_014497) -10 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 12173 chr17 17921309 17921489 + 0 NA intron (NM_001288789, intron 1 of 12) intron (NM_001288789, intron 1 of 12) 51071 NM_001082968 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 10996 chr16 10308660 10308763 + 0 NA Intergenic Intergenic -77344 NM_001256160 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 10813 chr15 100759816 100759941 + 0 NA Intergenic Intergenic -119814 NM_000693 220 Hs.459538 NM_000693 ENSG00000184254 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family member A3 protein-coding 24648 chr6 47309912 47310029 + 0 NA promoter-TSS (NM_014452) promoter-TSS (NM_014452) -23 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 8315 chr13 60396874 60396978 + 0 NA promoter-TSS (NM_001146070) promoter-TSS (NM_001146070) -367 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 14263 chr19 18323107 18323217 + 0 NA promoter-TSS (NM_001252129) promoter-TSS (NM_001252129) 29 NM_012321 25804 Hs.515255 NM_012321 ENSG00000130520 LSM4 GRP|YER112W LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 23163 chr5 128228204 128228308 + 0 NA Intergenic Intergenic 144465 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 27729 chr8 41073195 41073337 + 0 NA Intergenic MER31-int|LTR|ERV1 -175442 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 6343 chr11 129643381 129643519 + 0 NA Intergenic Intergenic -26181 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 10298 chr15 65517669 65517829 + 0 NA promoter-TSS (NM_130434) promoter-TSS (NM_130434) -36 NM_130434 54878 Hs.458609 NM_017743 ENSG00000074603 DPP8 DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141 dipeptidyl peptidase 8 protein-coding 7783 chr12 121712799 121712903 + 0 NA promoter-TSS (NM_001080825) promoter-TSS (NM_001080825) 99 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 31099 chrX 136251399 136251447 + 0 NA 5' UTR (NM_001173517, exon 1 of 18) 5' UTR (NM_001173517, exon 1 of 18) 156 NM_024597 79649 Hs.446275 NM_024597 ENSG00000129680 MAP7D3 MDP3 MAP7 domain containing 3 protein-coding 28778 chr8 141228008 141228112 + 0 NA intron (NM_001286646, intron 1 of 7) intron (NM_001286646, intron 1 of 7) 514 NM_001080431 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 26575 chr7 91264374 91264478 + 0 NA promoter-TSS (NM_003505) promoter-TSS (NM_003505) -42 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 22708 chr5 73202039 73202183 + 0 NA promoter-TSS (NR_134291) promoter-TSS (NR_134291) -150 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 20536 chr3 159765246 159765350 + 0 NA TTS (NR_121669) TTS (NR_121669) 3314 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 7720 chr12 118102301 118102405 + 0 NA intron (NM_019086, intron 1 of 8) intron (NM_019086, intron 1 of 8) 1652 NM_019086 54621 Hs.187624 NM_019086 ENSG00000176834 VSIG10 - V-set and immunoglobulin domain containing 10 protein-coding 804 chr1 45583360 45583464 + 0 NA promoter-TSS (NM_001195193) promoter-TSS (NM_001195193) -576 NM_152298 4678 Hs.319334 NM_002482 ENSG00000132780 NASP FLB7527|HMDRA1|PRO1999 nuclear autoantigenic sperm protein protein-coding 5728 chr11 80241907 80241957 + 0 NA Intergenic Intergenic 520871 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 5514 chr11 66345108 66345254 + 0 NA promoter-TSS (NM_001024957) promoter-TSS (NM_001024957) -70 NM_001024957 25855 Hs.100426 NM_015399 ENSG00000174744 BRMS1 - breast cancer metastasis suppressor 1 protein-coding 8095 chr13 33642528 33642545 + 0 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 34299 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 14459 chr19 40570643 40570850 + 0 NA intron (NM_020971, intron 33 of 35) CpG -6105 NM_138392 92799 Hs.26506 NM_138392 ENSG00000160410 SHKBP1 PP203|Sb1 SH3KBP1 binding protein 1 protein-coding 15595 chr2 58108014 58108143 + 0 NA intron (NM_001130481, intron 7 of 12) intron (NM_001130481, intron 7 of 12) 61366 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 12918 chr17 70137497 70137601 + 0 NA Intergenic Intergenic 31853 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 (head to head) ncRNA 5962 chr11 102112061 102112165 + 0 NA promoter-TSS (NM_001195045) promoter-TSS (NM_001195045) -327 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 4503 chr10 121078840 121078880 + 0 NA Intergenic Intergenic -227681 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 8407 chr13 79406472 79406576 + 0 NA promoter-TSS (NM_001286631) promoter-TSS (NM_001286631) 215 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 20967 chr3 191376890 191376932 + 0 NA intron (NM_178335, intron 6 of 11) intron (NM_178335, intron 6 of 11) -46375 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 12645 chr17 49570088 49570239 + 0 NA intron (NR_103773, intron 1 of 2) CpG 3901 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 29637 chr9 97013590 97013694 + 0 NA promoter-TSS (NR_002894) promoter-TSS (NR_002894) -62 NR_002894 84278 Hs.610084 NR_002894 ENSG00000196312 MFSD14C HIATL2 major facilitator superfamily domain containing 14C pseudo 26942 chr7 123916524 123916628 + 0 NA Intergenic Intergenic -8656 NM_001174044 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 26120 chr7 41386195 41386299 + 0 NA Intergenic Intergenic 284643 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 15572 chr2 55419868 55420089 + 0 NA promoter-TSS (NM_001135597) promoter-TSS (NM_001135597) -57 NM_001254943 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO coiled-coil domain containing 88A protein-coding 16331 chr2 131669042 131669134 + 0 NA Intergenic LTR4|LTR|ERV1 32063 NR_108087 101927994 Hs.635757 NR_108087 ENSG00000224559 LINC01087 - long intergenic non-protein coding RNA 1087 ncRNA 7435 chr12 93229613 93229717 + 0 NA intron (NR_040096, intron 2 of 4) MER44B|DNA|TcMar-Tigger 55299 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LOC102724933 - uncharacterized LOC102724933 ncRNA 30362 chr9 136624009 136624113 + 0 NA Intergenic Intergenic -6880 NR_135288 401561 Hs.609301 NR_135288 ENSG00000279141 LINC01451 HCCAT4 long intergenic non-protein coding RNA 1451 ncRNA 19973 chr3 119034777 119034881 + 0 NA promoter-TSS (NM_001015887) promoter-TSS (NM_001015887) 0 NM_001015887 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 1837 chr1 156106277 156106367 + 0 NA intron (NM_001282625, intron 3 of 12) intron (NM_001282625, intron 3 of 12) -8348 NM_170707 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 29465 chr9 87599920 87600024 + 0 NA intron (NM_001288729, intron 2 of 25) Tigger17a|DNA|TcMar-Tigger 101437 NM_001288729 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 19934 chr3 115245535 115245726 + 0 NA Intergenic Intergenic -98350 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 15288 chr2 30113739 30113843 + 0 NA Intergenic Intergenic -33093 NM_001127400 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 4020 chr10 86400010 86400149 + 0 NA Intergenic CpG -33586 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 23970 chr6 7505463 7505601 + 0 NA Intergenic Intergenic -36043 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 7800 chr12 122422081 122422133 + 0 NA intron (NM_002956, intron 1 of 24) CpG 462 NM_001247997 6249 Hs.524809 NM_002956 ENSG00000130779 CLIP1 CLIP|CLIP-170|CLIP170|CYLN1|RSN CAP-Gly domain containing linker protein 1 protein-coding 2323 chr1 198699563 198699704 + 0 NA exon (NM_002838, exon 5 of 33) exon (NM_002838, exon 5 of 33) 60665 NM_002838 5788 Hs.654514 NM_002838 ENSG00000081237 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type C protein-coding 16768 chr2 181810940 181811006 + 0 NA Intergenic Intergenic -80743 NM_001287504 6744 Hs.196983 NM_006751 ENSG00000138434 SSFA2 CS-1|CS1|KRAP|SPAG13 sperm specific antigen 2 protein-coding 6157 chr11 118321873 118321893 + 0 NA Intergenic MER57C1|LTR|ERV1 17303 NM_000733 916 Hs.3003 NM_000733 ENSG00000198851 CD3E IMD18|T3E|TCRE CD3e molecule protein-coding 25756 chr7 17298631 17298736 + 0 NA promoter-TSS (NM_001621) promoter-TSS (NM_001621) 31 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 24195 chr6 24666864 24667082 + 0 NA promoter-TSS (NM_016614) promoter-TSS (NM_016614) -62 NM_018473 55856 Hs.731605 NM_018473 ENSG00000112304 ACOT13 HT012|PNAS-27|THEM2 acyl-CoA thioesterase 13 protein-coding 20178 chr3 133568820 133568924 + 0 NA Intergenic Intergenic -4718 NM_001134422 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 23116 chr5 123700676 123700868 + 0 NA Intergenic Intergenic 155355 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 3049 chr1 238062294 238062433 + 0 NA Intergenic MER41G|LTR|ERV1 -171441 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 14450 chr19 40393006 40393110 + 0 NA TTS (NM_020956) TTS (NM_020956) -2837 NM_144685 147746 Hs.79363 NM_144685 ENSG00000160396 HIPK4 - homeodomain interacting protein kinase 4 protein-coding 12714 chr17 54968638 54968793 + 0 NA promoter-TSS (NM_001321518) promoter-TSS (NM_001321518) -50 NM_178509 252983 Hs.35199 NM_178509 ENSG00000166263 STXBP4 Synip syntaxin binding protein 4 protein-coding 12018 chr17 7035863 7036035 + 0 NA promoter-TSS (NM_201566) promoter-TSS (NM_201566) -126 NM_201566 201232 Hs.448010 NM_201566 ENSG00000174327 SLC16A13 MCT13 solute carrier family 16 member 13 protein-coding 16368 chr2 135875750 135875854 + 0 NA intron (NM_005915, intron 1 of 16) CpG 675 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 9654 chr14 99518600 99518704 + 0 NA intron (NM_001144995, intron 3 of 5) intron (NM_001144995, intron 3 of 5) 37250 NM_001099402 8812 Hs.510409 NM_003858 ENSG00000090061 CCNK CPR4 cyclin K protein-coding 9949 chr15 40953244 40953349 + 0 NA 5' UTR (NM_001142776, exon 1 of 4) 5' UTR (NM_001142776, exon 1 of 4) 147 NM_024111 79094 Hs.155569 NM_024111 ENSG00000128965 CHAC1 - ChaC glutathione specific gamma-glutamylcyclotransferase 1 protein-coding 20257 chr3 139313014 139313118 + 0 NA Intergenic L2c|LINE|L2 -30953 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 11671 chr16 77190764 77190868 + 0 NA promoter-TSS (NM_001286639) promoter-TSS (NM_001286639) -103 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 7374 chr12 88035393 88035558 + 0 NA promoter-TSS (NM_001009894) promoter-TSS (NM_001009894) -16 NM_001009894 91298 Hs.591009 NM_001009894 ENSG00000133641 C12orf29 - chromosome 12 open reading frame 29 protein-coding 28467 chr8 117388539 117388688 + 0 NA Intergenic Intergenic -132100 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 17421 chr20 347831 347846 + 0 NA promoter-TSS (NM_001323685) promoter-TSS (NM_001323685) -67 NM_001323685 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 11865 chr17 315569 315673 + 0 NA intron (NM_006987, intron 5 of 9) intron (NM_006987, intron 5 of 9) -15584 NM_001242780 100506388 Hs.627744 NM_001242780 ENSG00000262061 LOC100506388 - uncharacterized LOC100506388 protein-coding 20915 chr3 189513406 189513540 + 0 NA Intergenic Intergenic -83273 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 2399 chr1 202056791 202056839 + 0 NA Intergenic Intergenic 46253 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 10564 chr15 82108597 82108742 + 0 NA Intergenic Intergenic 20075 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 8548 chr13 105814347 105814364 + 0 NA Intergenic Intergenic 107525 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 478 chr1 28438021 28438125 + 0 NA promoter-TSS (NM_023923) promoter-TSS (NM_023923) -77 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 15084 chr2 16620746 16620850 + 0 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 45068 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 836 chr1 47333713 47333870 + 0 NA promoter-TSS (NR_046394) promoter-TSS (NR_046394) -6 NM_016308 51727 Hs.731647 NM_016308 ENSG00000162368 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine/uridine monophosphate kinase 1 protein-coding 7559 chr12 104138096 104138209 + 0 NA 5' UTR (NM_006166, exon 1 of 8) 5' UTR (NM_006166, exon 1 of 8) 110 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 4028 chr10 86959058 86959139 + 0 NA intron (NM_001330120, intron 3 of 6) intron (NM_001330120, intron 3 of 6) 567 NM_003087 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 3068 chr1 240803326 240803430 + 0 NA intron (NM_002924, intron 15 of 17) intron (NM_002924, intron 15 of 17) -191216 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 30025 chr9 120883126 120883230 + 0 NA intron (NM_001286840, intron 1 of 14) intron (NM_001286840, intron 1 of 14) -5850 NM_015651 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding 15112 chr2 18154454 18154573 + 0 NA Intergenic MLT2A2|LTR|ERVL 275856 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 3989 chr10 80459257 80459357 + 0 NA intron (NM_030927, intron 1 of 8) intron (NM_030927, intron 1 of 8) 5025 NM_001128309 81619 Hs.718943 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14 tetraspanin 14 protein-coding 27905 chr8 59505082 59505186 + 0 NA Intergenic L1PA17|LINE|L1 -385926 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 24300 chr6 29723223 29723369 + 0 NA promoter-TSS (NM_018950).5 promoter-TSS (NM_018950).5 -44 NM_018950 3134 Hs.519972 NM_018950 ENSG00000204642 HLA-F CDA12|HLA-5.4|HLA-CDA12|HLAF major histocompatibility complex, class I, F protein-coding 13635 chr18 57846447 57846551 + 0 NA Intergenic LTR33|LTR|ERVL -43404 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 27806 chr8 50640365 50640452 + 0 NA intron (NM_001321778, intron 13 of 16) L2a|LINE|L2 476277 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 3512 chr10 30423502 30423653 + 0 NA Intergenic Intergenic -10444 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 29357 chr9 81389590 81389763 + 0 NA Intergenic L2b|LINE|L2 299859 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 22933 chr5 96935240 96935362 + 0 NA promoter-TSS (NM_005575) promoter-TSS (NM_005575) -341 NM_005575 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 29280 chr9 76181099 76181252 + 0 NA intron (NM_001190482, intron 15 of 36) intron (NM_001190482, intron 15 of 36) 213353 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 26876 chr7 116524585 116524730 + 0 NA promoter-TSS (NM_001753) promoter-TSS (NM_001753) -128 NM_001753 857 Hs.74034 NM_001753 ENSG00000105974 CAV1 BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21 caveolin 1 protein-coding 19496 chr3 49470173 49470320 + 0 NA 5' UTR (NM_001177644, exon 1 of 3) 5' UTR (NM_001177644, exon 1 of 3) 114 NM_001177644 1605 Hs.76111 NM_004393 ENSG00000173402 DAG1 156DAG|A3a|AGRNR|DAG|MDDGA9|MDDGC7|MDDGC9 dystroglycan 1 protein-coding 28232 chr8 95133513 95133643 + 0 NA promoter-TSS (NM_024613) promoter-TSS (NM_024613) -143 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 24392 chr6 32178172 32178274 + 0 NA promoter-TSS (NM_032741).2 promoter-TSS (NM_032741).2 -112 NM_032741 10554 Hs.409230 NM_006411 ENSG00000204310 AGPAT1 1-AGPAT1|G15|LPAAT-alpha|LPAATA 1-acylglycerol-3-phosphate O-acyltransferase 1 protein-coding 21039 chr3 195909843 195909865 + 0 NA promoter-TSS (NM_005781) promoter-TSS (NM_005781) -845 NM_005781 10188 Hs.518513 NM_005781 ENSG00000061938 TNK2 ACK|ACK-1|ACK1|p21cdc42Hs tyrosine kinase non receptor 2 protein-coding 9104 chr14 58829720 58829800 + 0 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 1472 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 24792 chr6 73521178 73521282 + 0 NA promoter-TSS (NM_001402) promoter-TSS (NM_001402) -198 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 5906 chr11 95521347 95521444 + 0 NA Intergenic Intergenic 268395 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 29365 chr9 81842730 81842855 + 0 NA Intergenic Intergenic -70645 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 7448 chr12 94459864 94459981 + 0 NA promoter-TSS (NM_016122) promoter-TSS (NM_016122) 66 NM_016122 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 24254 chr6 27251457 27251606 + 0 NA intron (NM_005865, intron 7 of 11) CpG-23319 3808 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP protease, serine 16 protein-coding 11323 chr16 50066419 50066439 + 0 NA exon (NM_182922, exon 2 of 15) exon (NM_182922, exon 2 of 15) 488 NM_182922 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 8504 chr13 99614490 99614631 + 0 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 7896 NM_206808 171425 Hs.655642 NM_206808 ENSG00000125246 CLYBL CLB citrate lyase beta like protein-coding 30489 chrX 11759460 11759600 + 0 NA promoter-TSS (NM_006800) promoter-TSS (NM_006800) -86 NM_006800 10943 Hs.655288 NM_006800 ENSG00000005302 MSL3 MSL3L1 male-specific lethal 3 homolog (Drosophila) protein-coding 30075 chr9 122991493 122991722 + 0 NA intron (NM_012197, intron 6 of 25) AluJr|SINE|Alu -42036 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 27746 chr8 42271666 42271797 + 0 NA promoter-TSS (NR_125823) promoter-TSS (NR_125823) 429 NR_033818 3551 Hs.597664 NM_001556 ENSG00000104365 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of nuclear factor kappa B kinase subunit beta protein-coding 14317 chr19 24033342 24033497 + 0 NA promoter-TSS (NM_001278661) promoter-TSS (NM_001278661) 14 NM_001278677 9534 Hs.434406 NM_004876 ENSG00000213096 ZNF254 BMZF-5|HD-ZNF1|ZNF539|ZNF91L zinc finger protein 254 protein-coding 23814 chr5 179023630 179023863 + 0 NA promoter-TSS (NM_001136116) promoter-TSS (NM_001136116) -29 NM_001136116 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 7822 chr12 123094772 123094871 + 0 NA intron (NM_001300801, intron 1 of 24) intron (NM_001300801, intron 1 of 24) 13437 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 LOC100507091 - uncharacterized LOC100507091 ncRNA 23565 chr5 153629039 153629143 + 0 NA intron (NM_001258020, intron 3 of 16) MIR3|SINE|MIR 136919 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 26127 chr7 41991051 41991155 + 0 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 245916 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 13115 chr17 81050294 81050451 + 0 NA intron (NM_006340, intron 1 of 14) intron (NM_006340, intron 1 of 14) 15225 NM_006340 10458 Hs.128316 NM_006340 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1 associated protein 2 protein-coding 19267 chr3 24524499 24524531 + 0 NA Intergenic Intergenic -3080 NR_039955 100616448 NR_039955 ENSG00000265028 MIR4792 miR-4792 microRNA 4792 ncRNA 343 chr1 23368369 23368471 + 0 NA promoter-TSS (NR_033690) promoter-TSS (NR_033690) -34 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 29713 chr9 101398603 101398813 + 0 NA promoter-TSS (NM_001278232) promoter-TSS (NM_001278232) -71 NM_019051 54534 Hs.288224 NM_019051 ENSG00000136897 MRPL50 MRP-L50 mitochondrial ribosomal protein L50 protein-coding 13088 chr17 79074743 79074903 + 0 NA promoter-TSS (NM_001042573) promoter-TSS (NM_001042573) -114 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 17829 chr20 30585406 30585541 + 0 NA Intergenic TAR1|Satellite|telo -182011 NR_045115 140678 Hs.653099 NR_045115 MLLT10P1 MLLT10L|bA348I14.3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 pseudogene 1 pseudo 18311 chr20 57389360 57389464 + 0 NA Intergenic CpG -1986 NM_017495 55544 Hs.236361 NM_017495 ENSG00000132819 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 24812 chr6 78867449 78867623 + 0 NA promoter-TSS (NM_001010844) promoter-TSS (NM_001010844) -8 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 19013 chr22 45777579 45777683 + 0 NA intron (NM_013236, intron 9 of 11) intron (NM_013236, intron 9 of 11) 17107 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 15801 chr2 73113120 73113147 + 0 NA promoter-TSS (NM_015470) promoter-TSS (NM_015470) -115 NM_015470 26056 Hs.24557 NM_015470 ENSG00000135631 RAB11FIP5 GAF1|RIP11|pp75 RAB11 family interacting protein 5 protein-coding 9262 chr14 68140391 68140552 + 0 NA intron (NM_002877, intron 7 of 10) intron (NM_002877, intron 7 of 10) 316879 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 23528 chr5 150783517 150783621 + 0 NA intron (NM_032947, intron 1 of 1) intron (NM_032947, intron 1 of 1) 5623 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 18808 chr22 31646843 31646996 + 0 NA intron (NM_001326416, intron 3 of 10) intron (NM_001326416, intron 3 of 10) -8416 NM_178022 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 25929 chr7 27424405 27424509 + 0 NA Intergenic Intergenic -177228 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 23024 chr5 112707384 112707534 + 0 NA promoter-TSS (NM_001127511) promoter-TSS (NM_001127511) -46 NM_001127511 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC, WNT signaling pathway regulator protein-coding 19195 chr3 14265611 14265715 + 0 NA Intergenic L1ME3Cz|LINE|L1 86905 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 261 chr1 17460358 17460535 + 0 NA Intergenic Intergenic -20692 NM_018715 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 8716 chr14 23007157 23007261 + 0 NA intron (NM_001130706, intron 1 of 7) CpG 2992 NM_021944 60686 Hs.255874 NM_021944 ENSG00000100802 C14orf93 - chromosome 14 open reading frame 93 protein-coding 4685 chr11 1705643 1705764 + 0 NA Intergenic LTR8B|LTR|ERV1 8508 NM_001012416 440023 Hs.534863 NM_001012416 ENSG00000205864 KRTAP5-6 KRTAP5.6 keratin associated protein 5-6 protein-coding 26651 chr7 97972262 97972415 + 0 NA promoter-TSS (NR_002822) promoter-TSS (NR_002822) -12 NR_002822 389538 Hs.655977 NR_002822 MGC72080 - MGC72080 pseudogene pseudo 13176 chr17 82529691 82529795 + 0 NA intron (NM_004514, intron 1 of 8) intron (NM_004514, intron 1 of 8) 10025 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 28066 chr8 79783622 79783726 + 0 NA intron (NR_125410, intron 3 of 3) CpG 15532 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 2439 chr1 203674324 203674476 + 0 NA intron (NM_001684, intron 1 of 20) intron (NM_001684, intron 1 of 20) 47613 NM_001684 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 7768 chr12 121133241 121133378 + 0 NA intron (NR_033953, intron 1 of 10) intron (NR_033953, intron 1 of 10) 481 NR_033955 5027 Hs.729169 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 29144 chr9 69672989 69673124 + 0 NA promoter-TSS (NM_001163) promoter-TSS (NM_001163) -697 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 15714 chr2 67895273 67895438 + 0 NA Intergenic Intergenic -69793 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 28683 chr8 130376197 130376301 + 0 NA intron (NM_001247996, intron 2 of 30) intron (NM_001247996, intron 2 of 30) 67411 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 23830 chr5 179858835 179858969 + 0 NA promoter-TSS (NR_134283) promoter-TSS (NR_134283) -62 NM_016175 51149 Hs.741169 NM_016175 ENSG00000161010 MRNIP C5orf45 MRN complex interacting protein protein-coding 13941 chr19 4124156 4124273 + 0 NA promoter-TSS (NM_030662) promoter-TSS (NM_030662) -85 NM_030662 5605 Hs.465627 NM_030662 ENSG00000126934 MAP2K2 CFC4|MAPKK2|MEK2|MKK2|PRKMK2 mitogen-activated protein kinase kinase 2 protein-coding 10723 chr15 91867768 91867872 + 0 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 13520 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 27549 chr8 24156436 24156515 + 0 NA Intergenic Intergenic -137565 NM_014265 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 26924 chr7 122886805 122886826 + 0 NA promoter-TSS (NM_017954) promoter-TSS (NM_017954) -56 NM_017954 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 18919 chr22 39319663 39319767 + 0 NA promoter-TSS (NM_001033853) promoter-TSS (NM_001033853) -50 NM_000967 6122 Hs.119598 NM_000967 ENSG00000100316 RPL3 ASC-1|L3|TARBP-B ribosomal protein L3 protein-coding 5183 chr11 36747150 36747348 + 0 NA Intergenic Intergenic -148970 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 22593 chr5 59768538 59768674 + 0 NA promoter-TSS (NM_001197218) promoter-TSS (NM_001197218) 6 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 17705 chr20 18567267 18567417 + 0 NA promoter-TSS (NR_015432) promoter-TSS (NR_015432) -87 NR_015432 388789 Hs.349092 NR_015432 ENSG00000232388 LINC00493 - long intergenic non-protein coding RNA 493 ncRNA 24770 chr6 70667729 70667858 + 0 NA promoter-TSS (NM_001044305) promoter-TSS (NM_001044305) 22 NM_001281439 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 9013 chr14 52729998 52730016 + 0 NA promoter-TSS (NM_001130701) promoter-TSS (NM_001130701) -158 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 3407 chr10 22428004 22428108 + 0 NA Intergenic Intergenic 9873 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 31050 chrX 129982507 129982649 + 0 NA Intergenic CpG -22610 NM_021946 63035 Hs.496748 NM_021946 ENSG00000085185 BCORL1 BCoR-L1|CXorf10 BCL6 corepressor-like 1 protein-coding 25158 chr6 132003752 132003856 + 0 NA Intergenic LTR10B1|LTR|ERV1 -52426 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CTGF CCN2|HCS24|IGFBP8|NOV2 connective tissue growth factor protein-coding 23389 chr5 142058330 142058457 + 0 NA Intergenic L1ME2|LINE|L1 -45338 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 5900 chr11 95149882 95149986 + 0 NA promoter-TSS (NR_110303) promoter-TSS (NR_110303) -605 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 24363 chr6 31547482 31547617 + 0 NA promoter-TSS (NM_138282).4 promoter-TSS (NM_138282).4 -27 NM_001144961 4795 Hs.2764 NM_005007 ENSG00000204498 NFKBIL1 IKBL|LST1|NFKBIL NFKB inhibitor like 1 protein-coding 21544 chr4 86339164 86339228 + 0 NA intron (NM_002753, intron 2 of 13) intron (NM_002753, intron 2 of 13) 15448 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 17320 chr2 235027011 235027126 + 0 NA intron (NM_014521, intron 2 of 5) intron (NM_014521, intron 2 of 5) 75084 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 29596 chr9 94919590 94919740 + 0 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 109703 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 28970 chr9 19999669 19999773 + 0 NA Intergenic Intergenic -212702 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 12123 chr17 14738341 14738489 + 0 NA Intergenic Intergenic -276390 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 3980 chr10 80144383 80144487 + 0 NA intron (NR_138551, intron 3 of 3) intron (NR_138551, intron 3 of 3) 11933 NM_001331125 219348 Hs.204947 NM_001012973 ENSG00000189129 PLAC9 - placenta specific 9 protein-coding 19457 chr3 47380895 47380902 + 0 NA promoter-TSS (NM_015466) promoter-TSS (NM_015466) -84 NM_001304482 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase, non-receptor type 23 protein-coding 29824 chr9 109119937 109120093 + 0 NA promoter-TSS (NM_032012) promoter-TSS (NM_032012) -70 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 26175 chr7 44639323 44639427 + 0 NA intron (NM_001003941, intron 2 of 8) intron (NM_001003941, intron 2 of 8) 32853 NM_002541 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 11928 chr17 2828591 2828626 + 0 NA intron (NM_001330058, intron 2 of 24) intron (NM_001330058, intron 2 of 24) 32170 NM_001100398 23108 Hs.499659 NM_015085 ENSG00000132359 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 13123 chr17 81296140 81296244 + 0 NA promoter-TSS (NM_001037984) promoter-TSS (NM_001037984) -853 NM_138570 124565 Hs.352240 NM_138570 ENSG00000157637 SLC38A10 PP1744 solute carrier family 38 member 10 protein-coding 25482 chr6 167826709 167826813 + 0 NA promoter-TSS (NR_027906) promoter-TSS (NR_027906) 35 NR_027906 653483 Hs.520556 NM_001042508 ENSG00000198221 AFDN-AS1 C6orf124|HGC6.4|MLLT4-AS1|dJ431P23.3 AFDN antisense RNA 1 (head to head) ncRNA 18211 chr20 51275516 51275620 + 0 NA Intergenic Intergenic 177409 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 17949 chr20 36585728 36585832 + 0 NA intron (NM_001199535, intron 2 of 4) intron (NM_001199535, intron 2 of 4) 11226 NM_001199515 60436 Hs.632264 NM_021809 ENSG00000118707 TGIF2 - TGFB induced factor homeobox 2 protein-coding 26480 chr7 79293759 79293863 + 0 NA intron (NM_012301, intron 1 of 21) L2b|LINE|L2 -159146 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 10686 chr15 90211974 90212078 + 0 NA intron (NM_020210, intron 2 of 14) intron (NM_020210, intron 2 of 14) 10696 NM_001324032 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 18718 chr22 26322619 26322723 + 0 NA intron (NM_021115, intron 9 of 16) intron (NM_021115, intron 9 of 16) -106643 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 19030 chr22 46563821 46563925 + 0 NA Intergenic Intergenic -26703 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 19631 chr3 65927747 65927788 + 0 NA intron (NM_001033057, intron 1 of 22) intron (NM_001033057, intron 1 of 22) 33951 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 31105 chrX 136689559 136689663 + 0 NA intron (NM_004840, intron 10 of 21) intron (NM_004840, intron 10 of 21) 41434 NM_000074 959 Hs.592244 NM_000074 ENSG00000102245 CD40LG CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L CD40 ligand protein-coding 18980 chr22 42844908 42845012 + 0 NA intron (NM_014570, intron 2 of 15) intron (NM_014570, intron 2 of 15) 12442 NM_001142293 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 17482 chr20 3408004 3408154 + 0 NA promoter-TSS (NM_001009984) promoter-TSS (NM_001009984) -417 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 531 chr1 31712702 31712806 + 0 NA Intergenic Intergenic -8587 NM_001856 1307 Hs.368921 NM_001856 ENSG00000084636 COL16A1 447AA|FP1572 collagen type XVI alpha 1 chain protein-coding 18746 chr22 28741764 28741874 + 0 NA promoter-TSS (NM_001005735) promoter-TSS (NM_001005735) 15 NM_001005735 11200 Hs.291363 NM_007194 ENSG00000183765 CHEK2 CDS1|CHK2|HuCds1|LFS2|PP1425|RAD53|hCds1 checkpoint kinase 2 protein-coding 15250 chr2 27799309 27799476 + 0 NA intron (NM_022128, intron 7 of 7) intron (NM_022128, intron 7 of 7) 27675 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 25965 chr7 30284356 30284517 + 0 NA 5' UTR (NM_147128, exon 1 of 5) 5' UTR (NM_147128, exon 1 of 5) 129 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 17712 chr20 19047678 19047809 + 0 NA Intergenic Intergenic -164903 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 15481 chr2 46164333 46164493 + 0 NA intron (NM_005400, intron 14 of 14) intron (NM_005400, intron 14 of 14) -132989 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 721 chr1 41627080 41627184 + 0 NA intron (NM_024503, intron 3 of 8) intron (NM_024503, intron 3 of 8) -142449 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 1897 chr1 159869457 159869466 + 0 NA Intergenic Intergenic -6804 NM_001013661 391123 Hs.647718 NM_001013661 ENSG00000243284 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 13872 chr19 1747815 1747834 + 0 NA Intergenic L2c|LINE|L2 -5839 NM_001080488 390874 Hs.654347 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 28327 chr8 101098658 101098762 + 0 NA Intergenic L2a|LINE|L2 46656 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 669 chr1 38961671 38961775 + 0 NA Intergenic MER21C|LTR|ERVL -19893 NM_017821 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 18847 chr22 36396199 36396303 + 0 NA Intergenic Intergenic -8184 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 420 chr1 26378517 26378578 + 0 NA Intergenic Intergenic -5753 NM_173574 257101 Hs.353208 NM_173574 ENSG00000176083 ZNF683 Hobit zinc finger protein 683 protein-coding 28796 chr8 142815850 142816001 + 0 NA Intergenic Intergenic -18876 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 22762 chr5 77776309 77776489 + 0 NA promoter-TSS (NM_001297738) promoter-TSS (NM_001297738) -38 NM_004607 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 11334 chr16 50862078 50862182 + 0 NA Intergenic Intergenic -16643 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 19505 chr3 49900890 49900948 + 0 NA intron (NM_001244937, intron 1 of 18) intron (NM_001244937, intron 1 of 18) 2718 NM_001244937 4486 Hs.517973 NM_002447 ENSG00000164078 MST1R CD136|CDw136|NPCA3|PTK8|RON macrophage stimulating 1 receptor protein-coding 1348 chr1 94854809 94854913 + 0 NA intron (NM_152369, intron 8 of 13) MER20|DNA|hAT-Charlie 34317 NM_152369 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 5656 chr11 73956341 73956445 + 0 NA intron (NM_153614, intron 1 of 7) intron (NM_153614, intron 1 of 7) 6074 NM_153614 374407 Hs.567888 NM_153614 ENSG00000187726 DNAJB13 CILD34|RSPH16A|TSARG5|TSARG6 DnaJ heat shock protein family (Hsp40) member B13 protein-coding 16819 chr2 190358886 190358927 + 0 NA intron (NM_001128928, intron 2 of 6) intron (NM_001128928, intron 2 of 6) 15436 NM_002194 3628 Hs.32309 NM_002194 ENSG00000151689 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 19737 chr3 98645118 98645222 + 0 NA Intergenic L1PB1|LINE|L1 -51559 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 1137 chr1 77039866 77039970 + 0 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) -20225 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 26868 chr7 116315454 116315602 + 0 NA Intergenic Intergenic -28801 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 20467 chr3 155806216 155806326 + 0 NA promoter-TSS (NM_001308229) promoter-TSS (NM_001308229) 16 NM_001308229 285315 Hs.350846 NM_173657 ENSG00000174928 C3orf33 AC3-33 chromosome 3 open reading frame 33 protein-coding 27215 chr7 149873828 149873967 + 0 NA promoter-TSS (NR_027040) promoter-TSS (NR_027040) -35 NR_027040 401431 Hs.556998 NM_001008745 ENSG00000204934 ATP6V0E2-AS1 - ATP6V0E2 antisense RNA 1 ncRNA 27822 chr8 52818992 52819171 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -104615 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 10214 chr15 59997199 59997303 + 0 NA Intergenic CpG -6971 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 15151 chr2 20415524 20415669 + 0 NA Intergenic L1PBa|LINE|L1 -31475 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 20068 chr3 125375296 125375434 + 0 NA promoter-TSS (NM_021964) promoter-TSS (NM_021964) -11 NM_021964 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 7807 chr12 122527170 122527237 + 0 NA promoter-TSS (NM_023012) promoter-TSS (NM_023012) -59 NM_014708 9735 Hs.300559 NM_014708 ENSG00000184445 KNTC1 ROD kinetochore associated 1 protein-coding 24772 chr6 70884447 70884551 + 0 NA intron (NM_080742, intron 2 of 3) L2c|LINE|L2 72586 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 24094 chr6 15245378 15245470 + 0 NA promoter-TSS (NM_004973) promoter-TSS (NM_004973) -551 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 6356 chr11 130069630 130069734 + 0 NA promoter-TSS (NM_001328682) promoter-TSS (NM_001328682) -139 NM_001642 334 Hs.370247 NM_001642 ENSG00000084234 APLP2 APLP-2|APPH|APPL2|CDEBP amyloid beta precursor like protein 2 protein-coding 14006 chr19 6530889 6530980 + 0 NA promoter-TSS (NM_003811) promoter-TSS (NM_003811) -65 NM_003811 8744 Hs.1524 NM_003811 ENSG00000125657 TNFSF9 4-1BB-L|CD137L|TNLG5A tumor necrosis factor superfamily member 9 protein-coding 3381 chr10 21335170 21335274 + 0 NA Intergenic MamRep605|LTR?|LTR? 160920 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 8230 chr13 46804473 46804577 + 0 NA Intergenic MLT1G3|LTR|ERVL-MaLR -7293 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 10989 chr16 9127661 9127765 + 0 NA Intergenic Intergenic 36033 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 7317 chr12 79547578 79547682 + 0 NA Intergenic Intergenic 128373 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 5721 chr11 79419217 79419386 + 0 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 2925 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 26332 chr7 64665985 64666132 + 0 NA promoter-TSS (NR_104148) promoter-TSS (NR_104148) -25 NM_016220 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 22110 chr4 185396649 185396664 + 0 NA promoter-TSS (NM_181726) promoter-TSS (NM_181726) -30 NM_181726 353322 Hs.508154 NM_181726 ENSG00000186352 ANKRD37 Lrp2bp ankyrin repeat domain 37 protein-coding 27870 chr8 55970955 55971098 + 0 NA intron (NM_002350, intron 10 of 12) intron (NM_002350, intron 10 of 12) 91199 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 6288 chr11 125592596 125592710 + 0 NA promoter-TSS (NM_152713) promoter-TSS (NM_152713) -85 NR_132372 105369550 Hs.732083 NR_132372 ENSG00000254671 STT3A-AS1 - STT3A antisense RNA 1 ncRNA 15621 chr2 61065680 61065843 + 0 NA promoter-TSS (NM_032506) promoter-TSS (NM_032506) -109 NM_001330435 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 1475 chr1 109283203 109283265 + 0 NA promoter-TSS (NM_001005290) promoter-TSS (NM_001005290) -66 NM_001032291 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 28795 chr8 142789431 142789535 + 0 NA Intergenic Intergenic -2891 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 complex, locus D protein-coding 22948 chr5 98929578 98929667 + 0 NA non-coding (NR_036530, exon 1 of 1) non-coding (NR_036530, exon 1 of 1) 488 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA 10406 chr15 71975666 71975818 + 0 NA intron (NM_006901, intron 12 of 41) MER21A|LTR|ERVL -138516 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO/sentrin peptidase family member, NEDD8 specific protein-coding 13192 chr17_KI270729v1_random 24654 24800 + 0 NA NA (GAATG)n|Satellite|Satellite NA NA 26171 chr7 44582223 44582359 + 0 NA promoter-TSS (NM_001303059) promoter-TSS (NM_001303059) 4 NM_001303062 222068 Hs.598832 NM_182547 ENSG00000158604 TMED4 ERS25|GMP25iso|HNLF|p24a3|p24alpha3 transmembrane p24 trafficking protein 4 protein-coding 24701 chr6 53061834 53061963 + 0 NA promoter-TSS (NM_014920) promoter-TSS (NM_014920) -96 NM_014920 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|LCK2|MRK intestinal cell kinase protein-coding 24777 chr6 71228661 71228820 + 0 NA Intergenic HAL1ME|LINE|L1 -59702 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 16403 chr2 142868327 142868469 + 0 NA Intergenic LTR27E|LTR|ERV1 -9228 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 12268 chr17 28711228 28711397 + 0 NA promoter-TSS (NM_001304952) promoter-TSS (NM_001304952) -221 NM_001304954 147011 Hs.207471 NM_152465 ENSG00000167525 PROCA1 - protein interacting with cyclin A1 protein-coding 2456 chr1 204288320 204288478 + 0 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 71530 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 7291 chr12 76763958 76764101 + 0 NA promoter-TSS (NM_015336) promoter-TSS (NM_015336) -45 NM_015336 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 1192 chr1 84634856 84635052 + 0 NA promoter-TSS (NR_027379) promoter-TSS (NR_027379) 66 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 20616 chr3 169748815 169748972 + 0 NA Intergenic Intergenic 16167 NR_001566 7012 Hs.436182 NR_001566 ENSG00000270141 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 3017 chr1 235504558 235504712 + 0 NA promoter-TSS (NM_152490) promoter-TSS (NM_152490) -154 NM_152490 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 24314 chr6 30113250 30113365 + 0 NA promoter-TSS (NM_007028).3 promoter-TSS (NM_007028).3 -201 NR_134870 11074 Hs.493275 NM_007028 ENSG00000204616 TRIM31 C6orf13|HCG1|HCGI|RNF tripartite motif containing 31 protein-coding 1095 chr1 68497097 68497321 + 0 NA promoter-TSS (NM_001114120) promoter-TSS (NM_001114120) 12 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 24797 chr6 73929603 73929707 + 0 NA Intergenic L1M2a|LINE|L1 -139796 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 22460 chr5 43020114 43020218 + 0 NA promoter-TSS (NR_104650) promoter-TSS (NR_104650) -523 NR_104650 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 24431 chr6 34485050 34485154 + 0 NA intron (NM_020804, intron 1 of 9) intron (NM_020804, intron 1 of 9) 19041 NM_020804 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 10038 chr15 47717350 47717409 + 0 NA intron (NM_001198999, intron 4 of 19) CpG -1110 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 23899 chr6 3118461 3118565 + 0 NA non-coding (NR_026649, exon 1 of 8) non-coding (NR_026649, exon 1 of 8) 137 NM_004332 670 Hs.10136 NM_004332 ENSG00000137274 BPHL BPH-RP|MCNAA|VACVASE biphenyl hydrolase like protein-coding 12453 chr17 40140126 40140269 + 0 NA promoter-TSS (NM_007359) promoter-TSS (NM_007359) -57 NM_007359 22794 Hs.743287 NM_007359 ENSG00000108349 CASC3 BTZ|MLN51 cancer susceptibility candidate 3 protein-coding 1883 chr1 158675683 158675787 + 0 NA intron (NM_003126, intron 8 of 51) MER44B|DNA|TcMar-Tigger 10981 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 20210 chr3 135504046 135504150 + 0 NA Intergenic Intergenic -461575 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 21169 chr4 9924845 9924949 + 0 NA intron (NM_001001290, intron 7 of 12) intron (NM_001001290, intron 7 of 12) 96593 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 6618 chr12 12696160 12696264 + 0 NA promoter-TSS (NM_006143) promoter-TSS (NM_006143) -25 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 4832 chr11 11622157 11622261 + 0 NA promoter-TSS (NM_198516) promoter-TSS (NM_198516) -195 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 11047 chr16 14630365 14630524 + 0 NA promoter-TSS (NM_001134477) promoter-TSS (NM_001134477) -173 NM_001242992 5073 Hs.253197 NM_002582 ENSG00000140694 PARN DAN|DKCB6|PFBMFT4 poly(A)-specific ribonuclease protein-coding 18226 chr20 51860446 51860493 + 0 NA intron (NR_110016, intron 1 of 2) intron (NR_110016, intron 1 of 2) 2444 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 21157 chr4 7939742 7939871 + 0 NA exon (NM_203423, exon 1 of 1) exon (NM_203423, exon 1 of 1) 120 NM_198595 60312 Hs.529369 NM_021638 ENSG00000196526 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 19366 chr3 38496389 38496493 + 0 NA non-coding (NR_134938, exon 1 of 8) non-coding (NR_134938, exon 1 of 8) 169 NM_001145464 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 2515 chr1 207002850 207002996 + 0 NA Intergenic Intergenic 29833 NM_023938 79098 Hs.32417 NM_023938 ENSG00000182795 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 15140 chr2 20212624 20212666 + 0 NA intron (NM_001006946, intron 2 of 5) intron (NM_001006946, intron 2 of 5) 12521 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 21331 chr4 47914532 47914662 + 0 NA promoter-TSS (NM_001278624) promoter-TSS (NM_001278624) -40 NM_001278624 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 15956 chr2 95207368 95207534 + 0 NA Intergenic CpG 42034 NM_001017396 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 5017 chr11 24400418 24400522 + 0 NA Intergenic AluSx|SINE|Alu -96500 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 13762 chr18 70424080 70424184 + 0 NA Intergenic Intergenic -39541 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 11434 chr16 57810300 57810473 + 0 NA promoter-TSS (NM_001278081) promoter-TSS (NM_001278081) -251 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 2605 chr1 211515350 211515483 + 0 NA Intergenic CpG -22499 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3 protein-coding 10776 chr15 96312794 96312888 + 0 NA intron (NR_102744, intron 1 of 1) intron (NR_102744, intron 1 of 1) -13087 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 56 chr1 3531341 3531445 + 0 NA intron (NM_001409, intron 4 of 36) CpG 29397 NR_030277 693135 NR_030277 ENSG00000207776 MIR551A MIRN551A|mir-551a microRNA 551a ncRNA 13098 chr17 80036476 80036640 + 0 NA promoter-TSS (NM_019020) promoter-TSS (NM_019020) -74 NM_001243342 55036 Hs.202542 NM_017950 ENSG00000141519 CCDC40 CILD15|FAP172 coiled-coil domain containing 40 protein-coding 10171 chr15 57607810 57607914 + 0 NA intron (NR_104371, intron 2 of 16) intron (NR_104371, intron 2 of 16) 15958 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 3977 chr10 79984974 79985078 + 0 NA Intergenic L2c|LINE|L2 -35921 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 23217 chr5 132490836 132490985 + 0 NA promoter-TSS (NM_002198) promoter-TSS (NM_002198) -137 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 17116 chr2 219229609 219229771 + 0 NA promoter-TSS (NM_001077198) promoter-TSS (NM_001077198) -2 NM_001077198 79065 Hs.323363 NM_024085 ENSG00000198925 ATG9A APG9L1|MGD3208|mATG9 autophagy related 9A protein-coding 4282 chr10 103745693 103745920 + 0 NA promoter-TSS (NR_038940) promoter-TSS (NR_038940) -973 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 23017 chr5 111830543 111830697 + 0 NA intron (NM_001142474, intron 2 of 3) HERVL40-int|LTR|ERVL -72402 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 6819 chr12 31000928 31001032 + 0 NA Intergenic L2b|LINE|L2 -72865 NM_004399 1663 Hs.443960 NM_004399 ENSG00000013573 DDX11 CHL1|CHLR1|KRG2|WABS DEAD/H-box helicase 11 protein-coding 11294 chr16 47990788 47990892 + 0 NA Intergenic LTR8|LTR|ERV1 -103710 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 5966 chr11 102245146 102245250 + 0 NA Intergenic Intergenic -72252 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 5552 chr11 67317750 67317792 + 0 NA promoter-TSS (NR_024469) promoter-TSS (NR_024469) -68 NR_024469 100130987 Hs.664585 NR_024469 LOC100130987 - uncharacterized LOC100130987 ncRNA 27138 chr7 142375708 142375850 + 0 NA Intergenic Intergenic -103530 NR_036483 207147 Hs.604069 NR_036483 ENSG00000186163 TRY2P - trypsinogen-like pseudogene pseudo 20667 chr3 172550675 172550830 + 0 NA Intergenic LTR16A1|LTR|ERVL -27245 NM_001190942 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 17757 chr20 22712574 22712678 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -105109 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 7988 chr13 25287396 25287537 + 0 NA promoter-TSS (NM_004685) promoter-TSS (NM_004685) 100 NM_004685 9107 Hs.643702 NM_004685 ENSG00000139505 MTMR6 - myotubularin related protein 6 protein-coding 17798 chr20 24131507 24131611 + 0 NA Intergenic MER41B|LTR|ERV1 -68208 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 15341 chr2 36355729 36355849 + 0 NA promoter-TSS (NR_037631) promoter-TSS (NR_037631) -219 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 13459 chr18 38940915 38941019 + 0 NA Intergenic Intergenic 681208 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 20157 chr3 131361711 131361809 + 0 NA promoter-TSS (NR_002949) promoter-TSS (NR_002949) -85 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 3038 chr1 237411761 237411865 + 0 NA intron (NM_001035, intron 10 of 104) intron (NM_001035, intron 10 of 104) -59306 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 30845 chrX 77895447 77895592 + 0 NA promoter-TSS (NM_032121) promoter-TSS (NM_032121) 49 NM_032121 84061 Hs.323562 NM_032121 ENSG00000102158 MAGT1 IAP|MRX95|OST3B|PRO0756|XMEN|bA217H1.1 magnesium transporter 1 protein-coding 28394 chr8 106208866 106209055 + 0 NA Intergenic CR1_Mam|LINE|CR1 -61218 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 10612 chr15 85413563 85413707 + 0 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 33019 NM_006738 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 25007 chr6 110180075 110180198 + 0 NA promoter-TSS (NM_015891) promoter-TSS (NM_015891) -132 NM_001024936 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WAS protein family member 1 protein-coding 12892 chr17 67993711 67993753 + 0 NA promoter-TSS (NM_181655) promoter-TSS (NM_181655) -83 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 1761 chr1 153526263 153526412 + 0 NA Intergenic MER61D|LTR|ERV1 9904 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 8177 chr13 42048906 42049042 + 0 NA intron (NM_178009, intron 1 of 29) CpG-6631 266 NM_152910 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 13847 chr19 1021184 1021338 + 0 NA promoter-TSS (NM_001033026) promoter-TSS (NM_001033026) -119 NM_033420 91304 Hs.515003 NM_033420 ENSG00000182087 TMEM259 ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3 transmembrane protein 259 protein-coding 28921 chr9 6780033 6780137 + 0 NA intron (NM_015061, intron 1 of 21) intron (NM_015061, intron 1 of 21) 22444 NM_001304341 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 9894 chr15 38702678 38702754 + 0 NA Intergenic LTR22A|LTR|ERVK 6118 NM_207444 400359 Hs.448785 NM_207444 ENSG00000175779 C15orf53 - chromosome 15 open reading frame 53 protein-coding 7332 chr12 82358435 82358624 + 0 NA promoter-TSS (NM_032230) promoter-TSS (NM_032230) 32 NR_144942 84190 Hs.506222 NM_032230 ENSG00000127720 METTL25 C12orf26 methyltransferase like 25 protein-coding 6438 chr12 1217373 1217477 + 0 NA intron (NR_027946, intron 12 of 18) intron (NR_027946, intron 12 of 18) 189677 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 14483 chr19 41887978 41888013 + 0 NA intron (NM_199002, intron 1 of 28) intron (NM_199002, intron 1 of 28) 3616 NM_199002 9138 Hs.631550 NM_004706 ENSG00000076928 ARHGEF1 GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5 Rho guanine nucleotide exchange factor 1 protein-coding 10937 chr16 4183298 4183312 + 0 NA Intergenic CpG 58775 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL - sarcalumenin protein-coding 15575 chr2 55617588 55617692 + 0 NA promoter-TSS (NM_001122964) promoter-TSS (NM_001122964) 85 NM_001122964 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 17968 chr20 37524994 37525124 + 0 NA promoter-TSS (NM_001167823) promoter-TSS (NM_001167823) -508 NM_001167823 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 bladder cancer associated protein protein-coding 16026 chr2 101151358 101151462 + 0 NA promoter-TSS (NR_135594) promoter-TSS (NR_135594) 37 NM_001102426 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 2861 chr1 226739356 226739460 + 0 NA promoter-TSS (NM_002221) promoter-TSS (NM_002221) -233 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 23503 chr5 149960623 149960774 + 0 NA promoter-TSS (NM_000112) promoter-TSS (NM_000112) -39 NM_000112 1836 Hs.302738 NM_000112 ENSG00000155850 SLC26A2 D5S1708|DTD|DTDST|EDM4|MST153|MSTP157 solute carrier family 26 member 2 protein-coding 17431 chr20 768539 768701 + 0 NA promoter-TSS (NM_033409) promoter-TSS (NM_033409) -36 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 28916 chr9 6413595 6413710 + 0 NA intron (NR_046386, intron 1 of 16) CpG 501 NR_046386 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 22454 chr5 42811921 42812029 + 0 NA promoter-TSS (NM_005410) promoter-TSS (NM_005410) -53 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 19112 chr3 7504923 7505075 + 0 NA intron (NM_181874, intron 7 of 10) MSTD-int|LTR|ERVL-MaLR 30285 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 14996 chr2 10497978 10498048 + 0 NA Intergenic (CGGGC)n|Simple_repeat|Simple_repeat 48285 NR_110597 101929715 Hs.634550 NR_110597 LOC101929715 - uncharacterized LOC101929715 ncRNA 12075 chr17 8210333 8210392 + 0 NA promoter-TSS (NM_001313953) promoter-TSS (NM_001313953) -113 NM_001313951 9212 Hs.442658 NM_004217 ENSG00000178999 AURKB AIK2|AIM-1|AIM1|ARK2|AurB|IPL1|PPP1R48|STK12|STK5|aurkb-sv1|aurkb-sv2 aurora kinase B protein-coding 16640 chr2 170770767 170770882 + 0 NA promoter-TSS (NR_110185) promoter-TSS (NR_110185) -58 NR_110185 101926913 Hs.301715 NR_110185 LOC101926913 - uncharacterized LOC101926913 ncRNA 5849 chr11 93020406 93020496 + 0 NA Intergenic Intergenic 50828 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 7529 chr12 101408064 101408170 + 0 NA promoter-TSS (NM_001177) promoter-TSS (NM_001177) -297 NM_001301068 400 Hs.372616 NM_001177 ENSG00000120805 ARL1 ARFL1 ADP ribosylation factor like GTPase 1 protein-coding 22271 chr5 16550537 16550641 + 0 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -41591 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 FAM134B JK-1|JK1 family with sequence similarity 134 member B protein-coding 16538 chr2 160208256 160208360 + 0 NA Intergenic Intergenic -7995 NM_001282388 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 28432 chr8 110060517 110060603 + 0 NA Intergenic LTR1|LTR|ERV1 -84713 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 21592 chr4 94451712 94451873 + 0 NA promoter-TSS (NM_001256425) promoter-TSS (NM_001256425) -65 NM_001011516 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 71 chr1 6026190 6026311 + 0 NA 5' UTR (NM_003636, exon 1 of 16) 5' UTR (NM_003636, exon 1 of 16) 237 NM_003636 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 30316 chr9 133269767 133269860 + 0 NA intron (NM_020469, intron 1 of 6) AluJb|SINE|Alu 5401 NM_020469 28 Hs.654423 NM_020469 ENSG00000175164 ABO A3GALNT|A3GALT1|GTB|NAGAT ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase protein-coding 24352 chr6 31058232 31058336 + 0 NA intron (NR_003948, intron 3 of 3) Charlie13b|DNA|hAT-Charlie 4834 NR_003948 285834 Hs.207528 NR_003948 ENSG00000228789 HCG22 PBMUCL2 HLA complex group 22 ncRNA 8054 chr13 30430343 30430447 + 0 NA Intergenic Intergenic -8151 NR_125771 103724387 NR_125771 ENSG00000225039 LINC01058 - long intergenic non-protein coding RNA 1058 ncRNA 7608 chr12 107560963 107561140 + 0 NA intron (NM_001347944, intron 3 of 14) intron (NM_001347944, intron 3 of 14) -19806 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 26263 chr7 50534955 50535137 + 0 NA intron (NR_033845, intron 1 of 4) intron (NR_033845, intron 1 of 4) 3287 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 16432 chr2 147182330 147182502 + 0 NA Intergenic L1PA7|LINE|L1 595359 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 512 chr1 31065763 31065821 + 0 NA promoter-TSS (NM_001020658) promoter-TSS (NM_001020658) -75 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1 pumilio RNA binding family member 1 protein-coding 17205 chr2 226515068 226515172 + 0 NA Intergenic Intergenic 143673 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 5974 chr11 102552640 102552751 + 0 NA Intergenic Intergenic -21942 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 29089 chr9 36487805 36487917 + 0 NA Intergenic CpG -85001 NM_001256687 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 463 chr1 27672219 27672368 + 0 NA promoter-TSS (NM_002038) promoter-TSS (NM_002038) -80 NM_002038 2537 Hs.523847 NM_002038 ENSG00000126709 IFI6 6-16|FAM14C|G1P3|IFI-6-16|IFI616 interferon alpha inducible protein 6 protein-coding 18323 chr20 57902599 57902703 + 0 NA Intergenic Intergenic 7257 NR_039757 100616353 NR_039757 ENSG00000263453 MIR4532 mir-4532 microRNA 4532 ncRNA 11170 chr16 27203872 27203890 + 0 NA promoter-TSS (NM_001145348) promoter-TSS (NM_001145348) -94 NM_001145348 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 8379 chr13 76885478 76885605 + 0 NA exon (NM_138444, exon 1 of 1) exon (NM_138444, exon 1 of 1) 864 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 25276 chr6 145483242 145483346 + 0 NA Intergenic Intergenic -251575 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 20200 chr3 134375217 134375321 + 0 NA promoter-TSS (NM_001278685) promoter-TSS (NM_001278685) 148 NM_001278683 51421 Hs.426312 NM_016201 ENSG00000114019 AMOTL2 LCCP angiomotin like 2 protein-coding 11570 chr16 70114148 70114302 + 0 NA 5' UTR (NM_001322119, exon 1 of 17) 5' UTR (NM_001322119, exon 1 of 17) 599 NM_017990 55066 Hs.744043 NM_017990 ENSG00000090857 PDPR PDP3 pyruvate dehydrogenase phosphatase regulatory subunit protein-coding 25540 chr7 1504478 1504508 + 0 NA promoter-TSS (NM_001080453) promoter-TSS (NM_001080453) -111 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 6691 chr12 15911288 15911392 + 0 NA 5' UTR (NM_001300779, exon 1 of 8) 5' UTR (NM_001300779, exon 1 of 8) 168 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 17992 chr20 38870915 38871019 + 0 NA intron (NM_015568, intron 2 of 10) intron (NM_015568, intron 2 of 10) -55345 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 27228 chr7 151227264 151227408 + 0 NA promoter-TSS (NM_007189) promoter-TSS (NM_007189) 38 NM_005692 10061 Hs.654958 NM_005692 ENSG00000033050 ABCF2 ABC28|EST133090|HUSSY-18|HUSSY18 ATP binding cassette subfamily F member 2 protein-coding 19706 chr3 94441272 94441376 + 0 NA Intergenic Intergenic -378101 NM_001195643 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 19339 chr3 36677469 36677573 + 0 NA Intergenic L1M3c|LINE|L1 62340 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 15765 chr2 70301579 70301683 + 0 NA exon (NM_001329752, exon 1 of 3) exon (NM_001329752, exon 1 of 3) 414 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 23409 chr5 142896474 142896578 + 0 NA intron (NM_015071, intron 6 of 22) MLT1H|LTR|ERVL-MaLR -27616 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 10717 chr15 91385436 91385540 + 0 NA Intergenic Intergenic -77851 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 27774 chr8 47960778 47960785 + 0 NA promoter-TSS (NM_006904) promoter-TSS (NM_006904) 578 NM_005914 4173 Hs.460184 NM_005914 ENSG00000104738 MCM4 CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 18990 chr22 43404729 43404848 + 0 NA Intergenic MIRb|SINE|MIR -7226 NM_001044370 758 Hs.159538 NM_001044370 ENSG00000186732 MPPED1 239AB|C22orf1|FAM1A metallophosphoesterase domain containing 1 protein-coding 8219 chr13 45418332 45418479 + 0 NA promoter-TSS (NM_001010875) promoter-TSS (NM_001010875) 50 NM_001286806 253512 Hs.591230 NM_001010875 ENSG00000174032 SLC25A30 KMCP1 solute carrier family 25 member 30 protein-coding 17942 chr20 35995133 35995271 + 0 NA intron (NR_130714, intron 6 of 8) intron (NR_130714, intron 6 of 8) 26621 NM_001207076 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 11921 chr17 2484999 2485093 + 0 NA intron (NM_024086, intron 2 of 9) MER1A|DNA|hAT-Charlie 26860 NM_024086 79066 Hs.632237 NM_024086 ENSG00000127804 METTL16 METT10D methyltransferase like 16 protein-coding 21818 chr4 138911085 138911259 + 0 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 101474 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 21188 chr4 13892148 13892252 + 0 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) -219768 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 26550 chr7 87934107 87934211 + 0 NA promoter-TSS (NM_016351) promoter-TSS (NM_016351) 16 NM_001324420 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|MDC2 ADAM metallopeptidase domain 22 protein-coding 11698 chr16 80006609 80006713 + 0 NA Intergenic Intergenic 211412 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 29516 chr9 90921209 90921313 + 0 NA Intergenic Intergenic 93841 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 8473 chr13 97433973 97433977 + 0 NA promoter-TSS (NM_021033) promoter-TSS (NM_021033) -246 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 19058 chr22 50508121 50508259 + 0 NA promoter-TSS (NM_033200) promoter-TSS (NM_033200) -26 NM_014551 29781 Hs.730607 NM_014551 ENSG00000025770 NCAPH2 CAPH2 non-SMC condensin II complex subunit H2 protein-coding 4980 chr11 19454071 19454175 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 53106 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 29767 chr9 107020103 107020238 + 0 NA intron (NR_126029, intron 4 of 4) intron (NR_126029, intron 4 of 4) 82818 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 18838 chr22 36052742 36052872 + 0 NA Intergenic Intergenic -24270 NM_001082579 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding protein, fox-1 homolog 2 protein-coding 27881 chr8 56992961 56993065 + 0 NA intron (NM_017813, intron 1 of 4) MIR|SINE|MIR 858 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 26555 chr7 88227152 88227256 + 0 NA promoter-TSS (NM_001256892) promoter-TSS (NM_001256892) -211 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 26533 chr7 85750481 85750585 + 0 NA Intergenic L1PA7|LINE|L1 329411 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 25982 chr7 31193042 31193217 + 0 NA Intergenic CpG 140668 NM_001199636 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 3906 chr10 73920156 73920260 + 0 NA intron (NM_001001791, intron 1 of 4) intron (NM_001001791, intron 1 of 4) 2569 NM_001001791 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 bA417O11.3 chromosome 10 open reading frame 55 protein-coding 16091 chr2 108594347 108594433 + 0 NA intron (NM_001193488, intron 1 of 9) MIRb|SINE|MIR 5924 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 24704 chr6 53323304 53323408 + 0 NA intron (NM_001242831, intron 1 of 2) intron (NM_001242831, intron 1 of 2) 14261 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 18429 chr21 17527488 17527592 + 0 NA intron (NM_001207063, intron 1 of 4) intron (NM_001207063, intron 1 of 4) 14634 NM_001207063 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR coxsackie virus and adenovirus receptor protein-coding 9633 chr14 96821700 96821804 + 0 NA intron (NM_003384, intron 1 of 12) L2a|LINE|L2 24405 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A vaccinia related kinase 1 protein-coding 20310 chr3 142596334 142596432 + 0 NA promoter-TSS (NM_001145319) promoter-TSS (NM_001145319) -4 NM_001145319 5357 Hs.203637 NM_002670 ENSG00000120756 PLS1 - plastin 1 protein-coding 2425 chr1 203305255 203305359 + 0 NA promoter-TSS (NR_034150) promoter-TSS (NR_034150) 18 NR_034151 730227 Hs.293928 NR_034150 ENSG00000233791 LINC01136 - long intergenic non-protein coding RNA 1136 ncRNA 22564 chr5 57004908 57005070 + 0 NA Intergenic Intergenic -52859 NM_152622 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 1703 chr1 151190191 151190365 + 0 NA promoter-TSS (NM_001271087) promoter-TSS (NM_001271087) -65 NM_001271088 6944 Hs.2430 NM_005997 ENSG00000163159 VPS72 CFL1|Swc2|TCFL1|YL-1|YL1 vacuolar protein sorting 72 homolog protein-coding 29741 chr9 105296971 105297075 + 0 NA intron (NM_001286730, intron 1 of 15) MIR3|SINE|MIR 52410 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 27241 chr7 151727795 151727913 + 0 NA intron (NM_016203, intron 3 of 15) intron (NM_016203, intron 3 of 15) 8460 NM_001304527 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 5073 chr11 29329269 29329373 + 0 NA Intergenic Intergenic 653072 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 26282 chr7 51316397 51316501 + 0 NA intron (NM_001287438, intron 1 of 7) CpG 412 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 11485 chr16 66880480 66880576 + 0 NA promoter-TSS (NM_001329930) promoter-TSS (NM_001329930) 26 NM_001329931 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 23448 chr5 147037676 147037780 + 0 NA intron (NM_181677, intron 2 of 10) intron (NM_181677, intron 2 of 10) 18409 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 5880 chr11 94664427 94664531 + 0 NA intron (NR_135096, intron 4 of 6) L2c|LINE|L2 75876 NR_135093 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 4519 chr10 121754244 121754348 + 0 NA intron (NR_110006, intron 9 of 9) L1MC4|LINE|L1 -155838 NR_073009 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 21382 chr4 55547050 55547200 + 0 NA promoter-TSS (NM_004898) promoter-TSS (NM_004898) -216 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 27955 chr8 65717422 65717576 + 0 NA 3' UTR (NM_002603, exon 13 of 13) 3' UTR (NM_002603, exon 13 of 13) 47626 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 18111 chr20 46004869 46004973 + 0 NA Intergenic Intergenic -3987 NM_004994 4318 Hs.297413 NM_004994 ENSG00000100985 MMP9 CLG4B|GELB|MANDP2|MMP-9 matrix metallopeptidase 9 protein-coding 1172 chr1 81912485 81912581 + 0 NA intron (NM_001330645, intron 3 of 20) intron (NM_001330645, intron 3 of 20) 112136 NM_012302 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 26700 chr7 100336037 100336170 + 0 NA promoter-TSS (NR_036569) promoter-TSS (NR_036569) 24 NR_103720 101735302 Hs.521075 NR_103720 ENSG00000242294 STAG3L5P - stromal antigen 3-like 5 pseudogene pseudo 29488 chr9 88534567 88534585 + 0 NA promoter-TSS (NM_001161625) promoter-TSS (NM_001161625) -525 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2 nucleoredoxin-like 2 protein-coding 25809 chr7 20598542 20598646 + 0 NA Intergenic Intergenic -17028 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 17932 chr20 35607587 35607631 + 0 NA promoter-TSS (NR_119376) promoter-TSS (NR_119376) -47 NR_119376 80307 Hs.72222 NR_001442 ENSG00000088340 FER1L4 C20orf124 fer-1 like family member 4, pseudogene pseudo 4397 chr10 114404437 114404586 + 0 NA 5' UTR (NM_001001936, exon 1 of 19) 5' UTR (NM_001001936, exon 1 of 19) 267 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 28899 chr9 5437811 5437969 + 0 NA promoter-TSS (NM_018465) promoter-TSS (NM_018465) 47 NM_018465 55848 Hs.584242 NM_018465 ENSG00000107020 PLGRKT AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT) plasminogen receptor with a C-terminal lysine protein-coding 16921 chr2 201118776 201118858 + 0 NA 5' UTR (NM_001127183, exon 1 of 10) 5' UTR (NM_001127183, exon 1 of 10) 271 NM_001127183 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD like apoptosis regulator protein-coding 21008 chr3 194089726 194089858 + 0 NA Intergenic Intergenic -18822 NR_136179 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 4657 chr11 448341 448407 + 0 NA 5' UTR (NM_001329548, exon 1 of 12) 5' UTR (NM_001329548, exon 1 of 12) 106 NM_001329548 81490 Hs.12851 NM_030783 ENSG00000174915 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 22532 chr5 54517586 54517742 + 0 NA promoter-TSS (NM_001145427) promoter-TSS (NM_001145427) -95 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 8791 chr14 31208071 31208175 + 0 NA promoter-TSS (NM_015382) promoter-TSS (NM_015382) -600 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 3092 chr1 242824533 242824637 + 0 NA Intergenic Intergenic 277159 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 25242 chr6 142147123 142147237 + 0 NA promoter-TSS (NM_001324308) promoter-TSS (NM_001324308) 18 NM_001286371 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 19513 chr3 50292437 50292568 + 0 NA promoter-TSS (NM_006764) promoter-TSS (NM_006764) 93 NM_006764 7866 Hs.315177 NM_006764 ENSG00000214706 IFRD2 IFNRP|SKMc15|SM15 interferon related developmental regulator 2 protein-coding 27031 chr7 132117356 132117460 + 0 NA Intergenic Tigger12c|DNA|TcMar-Tigger -143453 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 21497 chr4 80492944 80492981 + 0 NA intron (NM_152770, intron 2 of 5) MER74A|LTR|ERVL 157242 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 C4orf22 - chromosome 4 open reading frame 22 protein-coding 30299 chr9 132669964 132670068 + 0 NA promoter-TSS (NM_012204) promoter-TSS (NM_012204) -19 NR_133925 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 14381 chr19 35748300 35748445 + 0 NA promoter-TSS (NM_019104) promoter-TSS (NM_019104) 11 NM_019104 55957 Hs.529100 NM_019104 ENSG00000267796 LIN37 F25965|ZK418.4|lin-37 lin-37 DREAM MuvB core complex component protein-coding 12771 chr17 58317605 58317646 + 0 NA intron (NM_024418, intron 13 of 30) intron (NM_024418, intron 13 of 30) -7825 NR_038410 100506779 Hs.718477 NR_038410 ENSG00000265148 TSPOAP1-AS1 BZRAP1-AS1 TSPOAP1 antisense RNA 1 ncRNA 11681 chr16 78034608 78034712 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 5571 NM_001244755 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 3836 chr10 70364576 70364622 + 0 NA intron (NR_103468, intron 1 of 2) intron (NR_103468, intron 1 of 2) 12180 NM_001278213 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 18147 chr20 48528553 48528639 + 0 NA Intergenic L2a|LINE|L2 168685 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 2114 chr1 177220113 177220211 + 0 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 48774 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 27818 chr8 52713200 52713302 + 0 NA intron (NM_001083617, intron 1 of 23) intron (NM_001083617, intron 1 of 23) 1215 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 15189 chr2 25311395 25311522 + 0 NA intron (NM_022552, intron 2 of 22) intron (NM_022552, intron 2 of 22) 17263 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 30064 chr9 122580467 122580571 + 0 NA Intergenic Intergenic -12042 NM_001004454 138881 Hs.632695 NM_001004454 ENSG00000171496 OR1L8 OR9-24 olfactory receptor family 1 subfamily L member 8 protein-coding 9548 chr14 90646144 90646200 + 0 NA intron (NR_110134, intron 2 of 4) intron (NR_110134, intron 2 of 4) 3543 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 13387 chr18 31230670 31230797 + 0 NA Intergenic Intergenic -67877 NM_004948 1823 Hs.567260 NM_004948 ENSG00000134765 DSC1 CDHF1|DG2/DG3 desmocollin 1 protein-coding 22902 chr5 95440948 95441052 + 0 NA intron (NM_152548, intron 7 of 9) intron (NM_152548, intron 7 of 9) 49656 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 27352 chr8 8387141 8387245 + 0 NA Intergenic Intergenic -5359 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related kinase activating pseudokinase 1 protein-coding 17689 chr20 18056548 18056652 + 0 NA intron (NM_001303462, intron 1 of 2) CpG 1282 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 5930 chr11 96464002 96464106 + 0 NA intron (NR_047481, intron 1 of 4) intron (NR_047481, intron 1 of 4) 42823 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 24339 chr6 30744553 30744641 + 0 NA promoter-TSS (NM_003897) promoter-TSS (NM_003897) -47 NM_003897 8870 Hs.76095 NM_003897 ENSG00000137331 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 2033 chr1 168288400 168288526 + 0 NA intron (NM_005149, intron 1 of 7) FLAM_C|SINE|Alu 7423 NM_005149 9095 Hs.716656 NM_005149 ENSG00000143178 TBX19 TBS19|TPIT|dJ747L4.1 T-box 19 protein-coding 17011 chr2 208595825 208595929 + 0 NA intron (NR_136588, intron 2 of 5) LTR60B|LTR|ERV1 53235 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 10963 chr16 4802911 4803050 + 0 NA promoter-TSS (NM_024589) promoter-TSS (NM_024589) -30 NM_024589 79641 Hs.459795 NM_024589 ENSG00000067836 ROGDI KTZS rogdi homolog protein-coding 10058 chr15 49155671 49155765 + 0 NA promoter-TSS (NR_036507) promoter-TSS (NR_036507) -41 NM_001001556 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 20411 chr3 151770155 151770271 + 0 NA promoter-TSS (NR_026915) promoter-TSS (NR_026915) -243 NR_026915 201651 Hs.383050 NR_026915 ENSG00000240602 AADACP1 - arylacetamide deacetylase pseudogene 1 pseudo 15494 chr2 46916019 46916111 + 0 NA promoter-TSS (NM_001171506) promoter-TSS (NM_001171506) 47 NM_001171507 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 18255 chr20 53786310 53786414 + 0 NA Intergenic Intergenic 89347 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 29418 chr9 85117876 85117961 + 0 NA Intergenic Intergenic 447541 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 17462 chr20 2237206 2237388 + 0 NA Intergenic Intergenic 30369 NM_001287682 388780 Hs.132163 NM_001287682 LOC388780 - uncharacterized LOC388780 protein-coding 30732 chrX 52935077 52935216 + 0 NA Intergenic CpG 21609 NM_001099684 727866 Hs.6451 NM_001099684 ENSG00000179304 FAM156B TMEM29B family with sequence similarity 156 member B protein-coding 14646 chr19 48469038 48469108 + 0 NA promoter-TSS (NM_004228) promoter-TSS (NM_004228) -135 NM_004228 9266 Hs.144011 NM_004228 ENSG00000105443 CYTH2 ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2 cytohesin 2 protein-coding 5821 chr11 88415100 88415254 + 0 NA Intergenic Intergenic -77390 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 180 chr1 12478162 12478266 + 0 NA intron (NM_018156, intron 66 of 68) intron (NM_018156, intron 66 of 68) -29032 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 1375 chr1 97488600 97488704 + 0 NA intron (NM_000110, intron 13 of 22) MER66B|LTR|ERV1 -308269 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 2907 chr1 228903173 228903316 + 0 NA Intergenic Intergenic 168167 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 28039 chr8 74073277 74073426 + 0 NA Intergenic Intergenic 82022 NM_001195797 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 10675 chr15 89774560 89774694 + 0 NA Intergenic MIR|SINE|MIR -1731 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 4097 chr10 93579105 93579298 + 0 NA exon (NM_181745, exon 3 of 4) exon (NM_181745, exon 3 of 4) 12536 NM_001195755 338557 Hs.661022 NM_181745 ENSG00000186188 FFAR4 BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 free fatty acid receptor 4 protein-coding 7914 chr12 132687477 132687581 + 0 NA promoter-TSS (NM_006231) promoter-TSS (NM_006231) -5 NM_006231 5426 Hs.524871 NM_006231 ENSG00000177084 POLE CRCS12|FILS|POLE1 DNA polymerase epsilon, catalytic subunit protein-coding 22418 chr5 39624587 39624691 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR 104208 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 19716 chr3 97821850 97822014 + 0 NA promoter-TSS (NM_153605) promoter-TSS (NM_153605) -108 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 27573 chr8 26191768 26191872 + 0 NA Intergenic Intergenic -99671 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2 regulatory subunit Balpha protein-coding 11496 chr16 67396392 67396500 + 0 NA intron (NM_001323627, intron 8 of 11) intron (NM_001323627, intron 8 of 11) -2911 NM_016140 51673 Hs.534458 NM_015964 ENSG00000159713 TPPP3 CGI-38|TPPP/p20|p20|p25gamma tubulin polymerization promoting protein family member 3 protein-coding 4323 chr10 109205995 109206099 + 0 NA Intergenic MER77B|LTR|ERVL 717199 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 9628 chr14 96391852 96391870 + 0 NA promoter-TSS (NM_152327) promoter-TSS (NM_152327) -250 NM_152327 122481 Hs.667462 NM_152327 ENSG00000140057 AK7 AK 7 adenylate kinase 7 protein-coding 20437 chr3 153130760 153130799 + 0 NA Intergenic Intergenic -31433 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 18406 chr20 63865023 63865117 + 0 NA promoter-TSS (NM_199363) promoter-TSS (NM_199363) -158 NM_001243895 7165 Hs.473296 NM_003288 ENSG00000101150 TPD52L2 D54|TPD54 tumor protein D52 like 2 protein-coding 19201 chr3 14921218 14921273 + 0 NA intron (NM_152536, intron 13 of 19) intron (NM_152536, intron 13 of 19) 26260 NR_046254 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 11343 chr16 51994650 51994799 + 0 NA Intergenic Intergenic 79211 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 6688 chr12 15789523 15789559 + 0 NA promoter-TSS (NM_004447) promoter-TSS (NM_004447) 35 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 4661 chr11 515246 515407 + 0 NA Intergenic L1MD|LINE|L1 -8043 NM_203387 6050 Hs.530687 NM_002939 ENSG00000023191 RNH1 RAI|RNH ribonuclease/angiogenin inhibitor 1 protein-coding 26225 chr7 47605209 47605313 + 0 NA Intergenic Intergenic -16678 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 1653 chr1 147539182 147539281 + 0 NA Intergenic Intergenic -2270 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS B-cell CLL/lymphoma 9 protein-coding 24588 chr6 43229327 43229547 + 0 NA promoter-TSS (NM_006443) promoter-TSS (NM_006443) 36 NM_199184 10591 Hs.109752 NM_006443 ENSG00000112667 DNPH1 C6orf108|RCL|dJ330M21.3 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding 28856 chr8 144827383 144827559 + 0 NA promoter-TSS (NM_001330623) promoter-TSS (NM_001330623) -47 NM_001282796 7553 Hs.493218 NM_003416 ENSG00000147789 ZNF7 HF.16|KOX4|zf30 zinc finger protein 7 protein-coding 16647 chr2 171434027 171434146 + 0 NA promoter-TSS (NM_001321154) promoter-TSS (NM_001321154) 23 NM_001321162 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 8085 chr13 33126324 33126428 + 0 NA intron (NM_178006, intron 6 of 13) intron (NM_178006, intron 6 of 13) 59703 NM_001243466 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 24788 chr6 73130259 73130363 + 0 NA intron (NM_001160133, intron 10 of 14) intron (NM_001160133, intron 10 of 14) 13203 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 23741 chr5 173144402 173144551 + 0 NA promoter-TSS (NM_001205) promoter-TSS (NM_001205) 34 NM_013979 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 8540 chr13 104408877 104408981 + 0 NA Intergenic L1MD1|LINE|L1 983729 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 25263 chr6 143689920 143690024 + 0 NA intron (NM_001100165, intron 1 of 11) AluSx1|SINE|Alu 12007 NM_001100165 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 10553 chr15 81165769 81165873 + 0 NA Intergenic LTR81B|LTR|Gypsy -31057 NM_001172128 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 19223 chr3 16995107 16995171 + 0 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 61943 NR_037465 100500913 NR_037465 ENSG00000154822 MIR3714 - microRNA 3714 ncRNA 16803 chr2 188292731 188292835 + 0 NA non-coding (NR_045563, exon 1 of 13) non-coding (NR_045563, exon 1 of 13) 120 NR_045562 51454 Hs.470887 NM_016315 ENSG00000144366 GULP1 CED-6|CED6|GULP GULP, engulfment adaptor PTB domain containing 1 protein-coding 2958 chr1 232678680 232678784 + 0 NA Intergenic Intergenic 63983 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 16292 chr2 128027433 128027535 + 0 NA promoter-TSS (NM_001145928) promoter-TSS (NM_001145928) -189 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 21040 chr3 195915058 195915189 + 0 NA Intergenic Intergenic -6114 NM_005781 10188 Hs.518513 NM_005781 ENSG00000061938 TNK2 ACK|ACK-1|ACK1|p21cdc42Hs tyrosine kinase non receptor 2 protein-coding 20011 chr3 120795155 120795300 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 41130 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 24041 chr6 11575660 11575792 + 0 NA 3' UTR (NM_001100829, exon 3 of 3) 3' UTR (NM_001100829, exon 3 of 3) 37499 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 17474 chr20 2873374 2873524 + 0 NA promoter-TSS (NM_080840) promoter-TSS (NM_080840) -47 NM_080840 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase, receptor type A protein-coding 15431 chr2 43051443 43051612 + 0 NA Intergenic Intergenic -11984 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 30315 chr9 133252430 133252584 + 0 NA Intergenic Intergenic 22707 NM_020469 28 Hs.654423 NM_020469 ENSG00000175164 ABO A3GALNT|A3GALT1|GTB|NAGAT ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase protein-coding 30150 chr9 127579076 127579218 + 0 NA promoter-TSS (NM_001035534) promoter-TSS (NM_001035534) -140 NM_001035534 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 23343 chr5 140261508 140261612 + 0 NA intron (NM_002622, intron 3 of 3) intron (NM_002622, intron 3 of 3) 41544 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 24924 chr6 90938184 90938288 + 0 NA Intergenic Intergenic -350935 NM_003188 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 20539 chr3 159787303 159787407 + 0 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -18743 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 3260 chr10 6779099 6779261 + 0 NA promoter-TSS (NR_108074) promoter-TSS (NR_108074) 0 NR_108074 100652997 Hs.255086 NR_108074 ENSG00000281186 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 15336 chr2 35455104 35455208 + 0 NA Intergenic L1M1|LINE|L1 -16249 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 6221 chr11 121464705 121464858 + 0 NA intron (NM_003105, intron 1 of 47) intron (NM_003105, intron 1 of 47) 12578 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 11903 chr17 1829798 1829965 + 0 NA promoter-TSS (NM_002945) promoter-TSS (NM_002945) 0 NM_052928 114826 Hs.514602 NM_052928 ENSG00000186532 SMYD4 ZMYND21 SET and MYND domain containing 4 protein-coding 7364 chr12 86712553 86712607 + 0 NA intron (NM_013244, intron 1 of 6) intron (NM_013244, intron 1 of 6) 126324 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 30437 chrX 1208567 1208671 + 0 NA intron (NM_001012288, intron 1 of 6) intron (NM_001012288, intron 1 of 6) 4104 NM_022148 64109 Hs.287729 NM_022148 ENSG00000205755 CRLF2 CRL2|CRLF2Y|TSLPR cytokine receptor-like factor 2 protein-coding 8588 chr13 109257093 109257206 + 0 NA Intergenic Intergenic -89846 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 16565 chr2 162318766 162318870 + 0 NA promoter-TSS (NM_022168) promoter-TSS (NM_022168) 55 NM_001330266 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 13033 chr17 76132705 76132854 + 0 NA Intergenic Intergenic -7777 NR_040017 100507218 Hs.654866 NR_040017 ENSG00000267128 RNF157-AS1 - RNF157 antisense RNA 1 ncRNA 18724 chr22 26512445 26512561 + 0 NA promoter-TSS (NM_001008697) promoter-TSS (NM_001008697) 3 NM_012143 24144 Hs.20225 NM_012143 ENSG00000100109 TFIP11 NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6 tuftelin interacting protein 11 protein-coding 13270 chr18 11860011 11860209 + 0 NA intron (NM_001261444, intron 1 of 7) intron (NM_001261444, intron 1 of 7) 2672 NM_001261444 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 13407 chr18 32092466 32092629 + 0 NA promoter-TSS (NM_001191324) promoter-TSS (NM_001191324) -59 NM_198128 51444 Hs.302408 NM_016271 ENSG00000134758 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138 protein-coding 20550 chr3 160583677 160583713 + 0 NA Intergenic AluJb|SINE|Alu -18107 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 6385 chr11 132072216 132072248 + 0 NA intron (NM_001144058, intron 1 of 7) intron (NM_001144058, intron 1 of 7) 161414 NM_016522 50863 Hs.504352 NM_016522 ENSG00000182667 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 14247 chr19 17555484 17555658 + 0 NA promoter-TSS (NM_024656) promoter-TSS (NM_024656) -23 NM_024656 79709 Hs.418795 NM_024656 ENSG00000130309 COLGALT1 GLT25D1 collagen beta(1-O)galactosyltransferase 1 protein-coding 875 chr1 52404493 52404600 + 0 NA promoter-TSS (NM_032864) promoter-TSS (NM_032864) -1 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 21343 chr4 49097632 49097786 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 111067 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 24723 chr6 54848301 54848405 + 0 NA intron (NM_001010872, intron 1 of 4) intron (NM_001010872, intron 1 of 4) 1582 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 29804 chr9 108551517 108551621 + 0 NA Intergenic Intergenic 304426 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 21938 chr4 156934106 156934210 + 0 NA intron (NR_036641, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger 37236 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 15379 chr2 38433821 38433925 + 0 NA Intergenic L2c|LINE|L2 -55289 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 8255 chr13 49082764 49082868 + 0 NA intron (NR_103528, intron 3 of 25) intron (NR_103528, intron 3 of 25) -27487 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 30401 chrM 2803 2895 + 0 NA non-coding (NR_137295, exon 1 of 1) non-coding (NR_137295, exon 1 of 1) 1178 NR_137295 2419 chr1 202889109 202889238 + 0 NA promoter-TSS (NM_002871) promoter-TSS (NM_002871) 84 NM_002871 5877 Hs.90875 NM_002871 ENSG00000183155 RABIF MSS4|RASGFR3|RASGRF3 RAB interacting factor protein-coding 9077 chr14 56579435 56579613 + 0 NA promoter-TSS (NM_017799) promoter-TSS (NM_017799) -269 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101 transmembrane protein 260 protein-coding 5541 chr11 67055283 67055380 + 0 NA Intergenic Intergenic -1487 NM_014578 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 26699 chr7 100272212 100272358 + 0 NA promoter-TSS (NM_178831) promoter-TSS (NM_178831) -53 NR_028039 352954 Hs.556063 NM_178831 ENSG00000239521 GATS STAG3OS GATS, stromal antigen 3 opposite strand protein-coding 19862 chr3 111595346 111595450 + 0 NA promoter-TSS (NM_024508) promoter-TSS (NM_024508) -63 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 14355 chr19 33820147 33820258 + 0 NA Intergenic CpG 23356 NM_024076 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 5544 chr11 67078449 67078611 + 0 NA Intergenic Intergenic 21712 NM_001300886 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 8909 chr14 37624175 37624279 + 0 NA intron (NM_001310135, intron 3 of 32) intron (NM_001310135, intron 3 of 32) 29028 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 23746 chr5 173573223 173573320 + 0 NA Intergenic Intergenic -6363 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 16801 chr2 188291878 188291914 + 0 NA promoter-TSS (NR_045563) promoter-TSS (NR_045563) 227 NM_016315 51454 Hs.470887 NM_016315 ENSG00000144366 GULP1 CED-6|CED6|GULP GULP, engulfment adaptor PTB domain containing 1 protein-coding 29531 chr9 91433342 91433446 + 0 NA Intergenic Intergenic -8768 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 29729 chr9 104854794 104854882 + 0 NA intron (NM_005502, intron 7 of 49) intron (NM_005502, intron 7 of 49) 73408 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 28216 chr8 94553479 94553627 + 0 NA promoter-TSS (NM_015496) promoter-TSS (NM_015496) -35 NM_015496 25962 Hs.202238 NM_015496 ENSG00000164944 KIAA1429 MSTP054|fSAP121 KIAA1429 protein-coding 28197 chr8 93740961 93741121 + 0 NA promoter-TSS (NM_203390) promoter-TSS (NM_203390) -45 NM_203390 389677 Hs.606916 NM_203390 ENSG00000183808 RBM12B MGC:33837 RNA binding motif protein 12B protein-coding 21906 chr4 151760937 151761100 + 0 NA promoter-TSS (NM_004564) promoter-TSS (NM_004564) 5 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 29989 chr9 116837167 116837317 + 0 NA intron (NM_014010, intron 10 of 21) intron (NM_014010, intron 10 of 21) 149940 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 11265 chr16 31443125 31443171 + 0 NA promoter-TSS (NM_001136509) promoter-TSS (NM_001136509) -121 NM_001136509 283933 Hs.722243 NM_001136509 ENSG00000176723 ZNF843 - zinc finger protein 843 protein-coding 8284 chr13 51453039 51453170 + 0 NA promoter-TSS (NM_001039937) promoter-TSS (NM_001039937) 35 NM_012141 26512 Hs.439440 NM_012141 ENSG00000102786 INTS6 DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2 integrator complex subunit 6 protein-coding 4811 chr11 10406326 10406430 + 0 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) -43943 NM_001172431 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 6867 chr12 38904943 38905087 + 0 NA intron (NM_153634, intron 1 of 19) intron (NM_153634, intron 1 of 19) 603 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 20532 chr3 159726374 159726526 + 0 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 42162 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 3939 chr10 77164140 77164217 + 0 NA intron (NM_001322832, intron 5 of 27) intron (NM_001322832, intron 5 of 27) 23347 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 29070 chr9 35114181 35114285 + 0 NA intron (NM_025182, intron 1 of 8) intron (NM_025182, intron 1 of 8) 1678 NM_025182 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 28240 chr8 95269693 95269844 + 0 NA promoter-TSS (NM_177965) promoter-TSS (NM_177965) -534 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 16627 chr2 169573873 169573977 + 0 NA promoter-TSS (NM_001322046) promoter-TSS (NM_001322046) -4 NM_024622 79675 Hs.529276 NM_024622 ENSG00000138399 FASTKD1 - FAST kinase domains 1 protein-coding 26557 chr7 88254887 88255044 + 0 NA Intergenic L1MA2|LINE|L1 -27972 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 20701 chr3 177201744 177201848 + 0 NA Intergenic Intergenic -4470 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 9066 chr14 55580088 55580192 + 0 NA promoter-TSS (NM_001079522) promoter-TSS (NM_001079522) -48 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 4272 chr10 103231354 103231458 + 0 NA Intergenic Intergenic -14481 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 14580 chr19 45792837 45792916 + 0 NA promoter-TSS (NM_004943) promoter-TSS (NM_004943) -74 NM_004943 1762 Hs.515474 NM_004943 ENSG00000185800 DMWD D19S593E|DMR-N9|DMRN9|gene59 dystrophia myotonica, WD repeat containing protein-coding 1822 chr1 155688658 155688899 + 0 NA promoter-TSS (NM_001198903) promoter-TSS (NM_001198903) -1 NM_018253 55249 Hs.584927 NM_018253 ENSG00000163374 YY1AP1 HCCA1|HCCA2|YAP|YY1AP YY1 associated protein 1 protein-coding 24913 chr6 90284335 90284439 + 0 NA intron (NM_021813, intron 1 of 8) intron (NM_021813, intron 1 of 8) 12521 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25 BTB domain and CNC homolog 2 protein-coding 24213 chr6 26045247 26045364 + 0 NA promoter-TSS (NM_003531) promoter-TSS (NM_003531) -106 NM_003531 8352 Hs.248176 NM_003531 ENSG00000278272 HIST1H3C H3.1|H3/c|H3FC histone cluster 1 H3 family member c protein-coding 21607 chr4 98794739 98794843 + 0 NA Intergenic Intergenic 134301 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 17680 chr20 17537136 17537240 + 0 NA intron (NM_001278608, intron 3 of 9) intron (NM_001278608, intron 3 of 9) -5819 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 6693 chr12 15962882 15962986 + 0 NA exon (NM_001300779, exon 5 of 8) exon (NM_001300779, exon 5 of 8) 51762 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 1033 chr1 64983230 64983350 + 0 NA intron (NR_119383, intron 5 of 6) intron (NR_119383, intron 5 of 6) -16354 NM_001320923 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 20722 chr3 177928362 177928480 + 0 NA Intergenic Intergenic 111556 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 4059 chr10 90859621 90859725 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -1759 NM_019859 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 20746 chr3 179991226 179991330 + 0 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) -17058 NM_001256754 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 2736 chr1 220337474 220337597 + 0 NA Intergenic Intergenic -65034 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 26373 chr7 70477149 70477253 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -655336 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 10626 chr15 86362646 86362800 + 0 NA intron (NM_152336, intron 17 of 24) L1MA9|LINE|L1 -45755 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 21750 chr4 119729132 119729236 + 0 NA Intergenic LTR8B|LTR|ERV1 75331 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 14279 chr19 18764108 18764270 + 0 NA intron (NM_015321, intron 8 of 13) intron (NM_015321, intron 8 of 13) 27116 NM_000095 1311 Hs.1584 NM_000095 ENSG00000105664 COMP EDM1|EPD1|MED|PSACH|THBS5|TSP5 cartilage oligomeric matrix protein protein-coding 8983 chr14 50955441 50955585 + 0 NA Intergenic LTR88b|LTR|Gypsy? -10983 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 18453 chr21 29169025 29169129 + 0 NA intron (NM_001286617, intron 9 of 9) MER20|DNA|hAT-Charlie 23518 NM_001286624 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 10836 chr16 229127 229292 + 0 NA intron (NM_001330420, intron 1 of 9) CpG 273 NM_001320226 55692 Hs.16803 NM_018032 ENSG00000007392 LUC7L LUC7B1|Luc7|SR+89|hLuc7B1 LUC7 like protein-coding 1539 chr1 113542264 113542368 + 0 NA intron (NM_152900, intron 1 of 20) MER44B|DNA|TcMar-Tigger 151463 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 29556 chr9 92737385 92737516 + 0 NA intron (NM_015250, intron 1 of 7) intron (NM_015250, intron 1 of 7) 27351 NM_015250 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|bA526D8.1 BICD cargo adaptor 2 protein-coding 18650 chr22 20509489 20509593 + 0 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 1493 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 14592 chr19 46232273 46232275 + 0 NA Intergenic Intergenic 2522 NM_198541 374918 Hs.546554 NM_198541 ENSG00000188293 IGFL1 APRG644|UNQ644 IGF like family member 1 protein-coding 9939 chr15 40807503 40807652 + 0 NA promoter-TSS (NM_018163) promoter-TSS (NM_018163) -99 NM_018163 55192 Hs.511069 NM_018163 ENSG00000104129 DNAJC17 - DnaJ heat shock protein family (Hsp40) member C17 protein-coding 25454 chr6 162727940 162727982 + 0 NA promoter-TSS (NM_013988) promoter-TSS (NM_013988) -9 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PARK2CRG PARK2 coregulated protein-coding 29937 chr9 114739027 114739131 + 0 NA Intergenic Intergenic 53451 NM_001204344 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A tumor necrosis factor superfamily member 15 protein-coding 27627 chr8 29287016 29287170 + 0 NA Intergenic Intergenic -24000 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 15967 chr2 96260851 96260957 + 0 NA intron (NM_017849, intron 2 of 3) intron (NM_017849, intron 2 of 3) 5109 NM_017849 55654 Hs.164303 NM_017849 ENSG00000135956 TMEM127 - transmembrane protein 127 protein-coding 6054 chr11 110907666 110907770 + 0 NA Intergenic Intergenic -194529 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 8102 chr13 34156000 34156108 + 0 NA Intergenic Intergenic 337985 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 9351 chr14 73662604 73662744 + 0 NA intron (NM_031427, intron 4 of 7) MLT1D|LTR|ERVL-MaLR 17799 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16 dynein axonemal light chain 1 protein-coding 14019 chr19 7506450 7506622 + 0 NA intron (NM_198534, intron 7 of 8) intron (NM_198534, intron 7 of 8) 8977 NM_198534 374877 Hs.631862 NM_198534 ENSG00000198723 C19orf45 - chromosome 19 open reading frame 45 protein-coding 14189 chr19 14537436 14537515 + 0 NA intron (NR_038104, intron 1 of 12) intron (NR_038104, intron 1 of 12) 7908 NR_038103 9524 Hs.515642 NM_004868 ENSG00000099797 TECR GPSN2|MRT14|SC2|TER trans-2,3-enoyl-CoA reductase protein-coding 11103 chr16 20900416 20900568 + 0 NA promoter-TSS (NM_001302835) promoter-TSS (NM_001302835) -134 NM_173475 123879 Hs.101007 NM_173475 ENSG00000188215 DCUN1D3 44M2.4|SCCRO3 defective in cullin neddylation 1 domain containing 3 protein-coding 5358 chr11 62045971 62045976 + 0 NA Intergenic Intergenic -78000 NM_001040694 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 26336 chr7 65038048 65038120 + 0 NA promoter-TSS (NR_033416) promoter-TSS (NR_033416) -270 NR_033416 643180 Hs.510847 NR_033416 ENSG00000234585 CCT6P3 CCT6-3P chaperonin containing TCP1 subunit 6 pseudogene 3 pseudo 8885 chr14 36478945 36479016 + 0 NA intron (NR_138596, intron 2 of 4) intron (NR_138596, intron 2 of 4) 34805 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 3527 chr10 31603536 31603646 + 0 NA Intergenic CpG 281970 NM_001323675 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 6821 chr12 31073723 31073868 + 0 NA promoter-TSS (NM_030653) promoter-TSS (NM_030653) -50 NM_004399 1663 Hs.443960 NM_004399 ENSG00000013573 DDX11 CHL1|CHLR1|KRG2|WABS DEAD/H-box helicase 11 protein-coding 14291 chr19 19366912 19367045 + 0 NA Intergenic Intergenic -18855 NM_017660 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 13287 chr18 12948301 12948405 + 0 NA intron (NM_031216, intron 1 of 8) CpG 369 NM_001013437 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 6440 chr12 1592752 1592778 + 0 NA intron (NM_152441, intron 1 of 1) intron (NM_152441, intron 1 of 1) 1400 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 7052 chr12 53099445 53099590 + 0 NA intron (NM_002178, intron 1 of 3) intron (NM_002178, intron 1 of 3) 1865 NM_002178 3489 Hs.274313 NM_002178 ENSG00000167779 IGFBP6 IBP6 insulin like growth factor binding protein 6 protein-coding 6754 chr12 25924685 25924789 + 0 NA Intergenic Intergenic 32848 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 atnisense RNA 1 ncRNA 3771 chr10 63133173 63133310 + 0 NA promoter-TSS (NM_001282405) promoter-TSS (NM_001282405) -6 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 31140 chrX 150201030 150201134 + 0 NA Intergenic MIR3|SINE|MIR -26922 NR_031748 100313839 NR_031748 ENSG00000252454 MIR2114 - microRNA 2114 ncRNA 1011 chr1 63774119 63774248 + 0 NA 5' UTR (NM_001083592, exon 1 of 7) 5' UTR (NM_001083592, exon 1 of 7) 164 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 10460 chr15 75043113 75043217 + 0 NA promoter-TSS (NM_001301104) promoter-TSS (NM_001301104) -104 NM_001301104 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 8463 chr13 97125949 97126146 + 0 NA Intergenic Intergenic 53575 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 4515 chr10 121553964 121554033 + 0 NA intron (NM_001144918, intron 2 of 15) intron (NM_001144918, intron 2 of 15) -22684 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 27608 chr8 27872755 27872775 + 0 NA intron (NM_173833, intron 8 of 8) intron (NM_173833, intron 8 of 8) 13351 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 26495 chr7 80919058 80919189 + 0 NA 5' UTR (NM_006379, exon 1 of 18) 5' UTR (NM_006379, exon 1 of 18) 228 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 17018 chr2 209382912 209383064 + 0 NA Intergenic Intergenic -41059 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 26740 chr7 102273987 102274091 + 0 NA intron (NM_001202546, intron 14 of 21) intron (NM_001202546, intron 14 of 21) -11023 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 22587 chr5 59194014 59194136 + 0 NA intron (NM_001165899, intron 4 of 16) intron (NM_001165899, intron 4 of 16) 82044 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 20023 chr3 121995552 121995735 + 0 NA intron (NM_001199800, intron 3 of 5) intron (NM_001199800, intron 3 of 5) 26637 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 9714 chr14 103057616 103057764 + 0 NA promoter-TSS (NM_006035) promoter-TSS (NM_006035) -285 NM_006035 9578 Hs.654634 NM_006035 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta protein-coding 10358 chr15 69462855 69462965 + 0 NA Intergenic Intergenic 10090 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 29748 chr9 105901595 105901699 + 0 NA Intergenic Intergenic 207122 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 10557 chr15 81297425 81297523 + 0 NA intron (NM_004513, intron 1 of 6) intron (NM_004513, intron 1 of 6) 561 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 2093 chr1 174999678 174999841 + 0 NA promoter-TSS (NM_014412) promoter-TSS (NM_014412) 3 NM_014412 27101 Hs.508524 NM_014412 ENSG00000116161 CACYBP GIG5|PNAS-107|S100A6BP|SIP calcyclin binding protein protein-coding 16446 chr2 149069464 149069614 + 0 NA intron (NM_001317006, intron 1 of 4) intron (NM_001317006, intron 1 of 4) -7983 NM_001317004 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 28650 chr8 127890101 127890172 + 0 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 58587 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 1927 chr1 161115385 161115489 + 0 NA intron (NM_012394, intron 1 of 3) MER44D|DNA|TcMar-Tigger -2635 NM_001185092 4817 Hs.146406 NM_005600 ENSG00000158793 NIT1 - nitrilase 1 protein-coding 4779 chr11 8343149 8343239 + 0 NA Intergenic Intergenic -74559 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 10139 chr15 55408365 55408464 + 0 NA promoter-TSS (NM_001198784) promoter-TSS (NM_001198784) -38 NM_004748 9236 Hs.285051 NM_004748 ENSG00000260916 CCPG1 CPR8 cell cycle progression 1 protein-coding 5457 chr11 65096109 65096213 + 0 NA promoter-TSS (NM_013265) promoter-TSS (NM_013265) 46 NM_013265 738 Hs.277517 NM_013265 ENSG00000149823 VPS51 ANG2|ANG3|C11orf2|C11orf3|FFR VPS51, GARP complex subunit protein-coding 14630 chr19 47726150 47726292 + 0 NA exon (NM_014601, exon 4 of 6) exon (NM_014601, exon 4 of 6) 12877 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 1442 chr1 107691684 107691788 + 0 NA intron (NM_006113, intron 17 of 26) intron (NM_006113, intron 17 of 26) -3232 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 1614 chr1 120176380 120176538 + 0 NA promoter-TSS (NM_004892) promoter-TSS (NM_004892) 62 NM_004892 9554 Hs.632438 NM_004892 ENSG00000265808 SEC22B ERS-24|SEC22L1 SEC22 homolog B, vesicle trafficking protein (gene/pseudogene) protein-coding 2218 chr1 183916212 183916349 + 0 NA intron (NM_001297672, intron 14 of 16) intron (NM_001297672, intron 14 of 16) 111199 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 2316 chr1 198443450 198443585 + 0 NA Intergenic Intergenic 97428 NM_001320218 127124 Hs.127743 NM_133262 ENSG00000151418 ATP6V1G3 ATP6G3|Vma10 ATPase H+ transporting V1 subunit G3 protein-coding 13135 chr17 81666610 81666714 + 0 NA promoter-TSS (NR_130939) promoter-TSS (NR_130939) -25 NM_001304999 339229 Hs.405942 NM_001039842 ENSG00000204237 OXLD1 C17orf90 oxidoreductase like domain containing 1 protein-coding 10895 chr16 2682378 2682522 + 0 NA promoter-TSS (NM_018992) promoter-TSS (NM_018992) -44 NM_018992 54442 Hs.61960 NM_018992 ENSG00000167977 KCTD5 - potassium channel tetramerization domain containing 5 protein-coding 11307 chr16 48607138 48607294 + 0 NA intron (NM_153029, intron 1 of 6) intron (NM_153029, intron 1 of 6) 2993 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 17539 chr20 6054100 6054204 + 0 NA promoter-TSS (NM_152611) promoter-TSS (NM_152611) -72 NM_152611 164312 Hs.149133 NM_152611 ENSG00000125872 LRRN4 C20orf75|NLRR-4|NLRR4|dJ1056H1.1 leucine rich repeat neuronal 4 protein-coding 15246 chr2 27752843 27752978 + 0 NA Intergenic Intergenic -18807 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 13478 chr18 44651538 44651642 + 0 NA Intergenic Intergenic -28583 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 6555 chr12 7584310 7584333 + 0 NA Intergenic LTR10A|LTR|ERV1 -80503 NM_004244 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 5898 chr11 95119861 95119876 + 0 NA intron (NM_015036, intron 1 of 1) L1MA2|LINE|L1 30058 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 27091 chr7 139109486 139109515 + 0 NA 5' UTR (NM_020119, exon 1 of 13) 5' UTR (NM_020119, exon 1 of 13) 219 NM_020119 56829 Hs.133512 NM_020119 ENSG00000105939 ZC3HAV1 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 zinc finger CCCH-type containing, antiviral 1 protein-coding 18328 chr20 58132025 58132129 + 0 NA Intergenic Intergenic -18850 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 4401 chr10 114507522 114507653 + 0 NA intron (NM_001003407, intron 6 of 21) intron (NM_001003407, intron 6 of 21) 19339 NM_006720 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 27563 chr8 25179751 25179786 + 0 NA Intergenic Intergenic -4955 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 9274 chr14 68685907 68686011 + 0 NA Intergenic Intergenic -57172 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1383 chr1 98661915 98662010 + 0 NA intron (NM_152238, intron 1 of 7) CpG 282 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 12055 chr17 7844834 7844907 + 0 NA intron (NM_001080424, intron 1 of 21) CpG 4953 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 28003 chr8 70669117 70669284 + 0 NA promoter-TSS (NM_016027) promoter-TSS (NM_016027) 12 NM_016027 51110 Hs.118554 NM_016027 ENSG00000147592 LACTB2 CGI-83 lactamase beta 2 protein-coding 22751 chr5 76790732 76790836 + 0 NA Intergenic Intergenic -28193 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 21258 chr4 25233933 25234046 + 0 NA promoter-TSS (NM_018323) promoter-TSS (NM_018323) -42 NR_144633 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 666 chr1 38859785 38859914 + 0 NA promoter-TSS (NM_001271851) promoter-TSS (NM_001271851) -26 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 30536 chrX 18425392 18425536 + 0 NA promoter-TSS (NM_003159) promoter-TSS (NM_003159) -141 NM_003159 6792 Hs.659851 NM_003159 ENSG00000008086 CDKL5 CFAP247|EIEE2|ISSX|STK9 cyclin dependent kinase like 5 protein-coding 26436 chr7 75878953 75879083 + 0 NA promoter-TSS (NM_001040457) promoter-TSS (NM_001040457) 26 NM_001346186 57414 Hs.488827 NM_020684 ENSG00000005486 RHBDD2 NPD007|RHBDL7 rhomboid domain containing 2 protein-coding 14180 chr19 14117929 14117937 + 0 NA promoter-TSS (NM_002730) promoter-TSS (NM_002730) -186 NM_002730 5566 Hs.631630 NM_002730 ENSG00000072062 PRKACA PKACA|PPNAD4 protein kinase cAMP-activated catalytic subunit alpha protein-coding 13299 chr18 22032547 22032595 + 0 NA Intergenic Intergenic 136397 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 8650 chr13 113837812 113837963 + 0 NA intron (NM_000820, intron 6 of 14) intron (NM_000820, intron 6 of 14) 22277 NR_044995 650669 Hs.369201 NM_001039799 GAS6-AS1 - GAS6 antisense RNA 1 ncRNA 11478 chr16 66618746 66618824 + 0 NA 3' UTR (NM_181521, exon 4 of 4) 3' UTR (NM_181521, exon 4 of 4) 14054 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 8880 chr14 36091244 36091286 + 0 NA intron (NR_073454, intron 1 of 2) MLT1J|LTR|ERVL-MaLR 20838 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 3794 chr10 67764089 67764193 + 0 NA Intergenic CpG -67950 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 27012 chr7 130904484 130904507 + 0 NA intron (NR_110472, intron 2 of 3) intron (NR_110472, intron 2 of 3) 8815 NR_110472 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 20407 chr3 151305146 151305324 + 0 NA intron (NM_023915, intron 1 of 2) MamRTE1|LINE|RTE-BovB 11613 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 FKSG78|GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 25506 chr6 170438513 170438644 + 0 NA Intergenic Intergenic 107817 NR_039787 100616430 NR_039787 ENSG00000266245 MIR4644 - microRNA 4644 ncRNA 13510 chr18 46322474 46322594 + 0 NA Intergenic Intergenic -11690 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 3884 chr10 73118075 73118179 + 0 NA intron (NM_001283015, intron 2 of 7) intron (NM_001283015, intron 2 of 7) 7752 NR_104264 25961 Hs.533657 NM_015901 ENSG00000166321 NUDT13 - nudix hydrolase 13 protein-coding 25078 chr6 121826561 121826665 + 0 NA Intergenic LTR16|LTR|ERVL 391036 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 22261 chr5 14959677 14959781 + 0 NA Intergenic Intergenic -87951 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 22909 chr5 95728658 95728762 + 0 NA Intergenic MER41B|LTR|ERV1 -2436 NM_014899 22836 Hs.445030 NM_014899 ENSG00000164292 RHOBTB3 - Rho related BTB domain containing 3 protein-coding 7546 chr12 103505518 103505608 + 0 NA Intergenic Intergenic 9523 NR_135004 105369945 Hs.742785 NR_135004 LOC105369945 - uncharacterized LOC105369945 ncRNA 30161 chr9 127955476 127955580 + 0 NA intron (NM_001035254, intron 1 of 10) intron (NM_001035254, intron 1 of 10) -4814 NM_203305 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 22584 chr5 58460107 58460142 + 0 NA promoter-TSS (NM_006622) promoter-TSS (NM_006622) 15 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 4938 chr11 17000359 17000509 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 13982 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 30069 chr9 122913080 122913087 + 0 NA intron (NM_006626, intron 1 of 1) intron (NM_006626, intron 1 of 1) 245 NM_006626 10773 Hs.654596 NM_006626 ENSG00000186130 ZBTB6 ZID|ZNF482 zinc finger and BTB domain containing 6 protein-coding 6125 chr11 116420929 116421033 + 0 NA Intergenic MER1A|DNA|hAT-Charlie -218441 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 16522 chr2 158926582 158926716 + 0 NA Intergenic AluSq|SINE|Alu -41985 NM_001145909 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 15163 chr2 20824063 20824167 + 0 NA promoter-TSS (NM_001282719) promoter-TSS (NM_001282719) -985 NM_001282722 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 21550 chr4 86928018 86928161 + 0 NA intron (NR_038841, intron 2 of 2) MIRb|SINE|MIR 6761 NR_038841 100506746 Hs.657766 NR_038841 ENSG00000163633 LOC100506746 - uncharacterized LOC100506746 ncRNA 23900 chr6 3157477 3157581 + 0 NA promoter-TSS (NM_001310315) promoter-TSS (NM_001310315) 20 NM_001069 7280 Hs.654543 NM_001069 ENSG00000137267 TUBB2A CDCBM5|TUBB|TUBB2 tubulin beta 2A class IIa protein-coding 11828 chr16 87950981 87951114 + 0 NA promoter-TSS (NM_001173541) promoter-TSS (NM_001173541) -385 NM_001173540 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 323 chr1 21626932 21627047 + 0 NA intron (NM_001145658, intron 2 of 24) MIRb|SINE|MIR 24866 NM_001145658 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 26855 chr7 115100072 115100176 + 0 NA intron (NR_120521, intron 1 of 3) L1MEc|LINE|L1 21166 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 16548 chr2 160493015 160493017 + 0 NA intron (NM_016836, intron 1 of 13) CpG 791 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 29809 chr9 108634757 108634923 + 0 NA Intergenic Intergenic 221155 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 18003 chr20 40415364 40415499 + 0 NA Intergenic Intergenic 273809 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 22885 chr5 92552269 92552373 + 0 NA Intergenic Intergenic 1019022 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 9443 chr14 78022187 78022291 + 0 NA Intergenic Intergenic -148134 NM_001330195 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 14806 chr19 55217027 55217136 + 0 NA Intergenic CpG -7575 NM_001161440 5794 Hs.179770 NM_002842 ENSG00000080031 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type H protein-coding 187 chr1 12618388 12618528 + 0 NA promoter-TSS (NM_004753) promoter-TSS (NM_004753) -727 NM_004753 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 8968 chr14 50013528 50013681 + 0 NA intron (NR_131171, intron 6 of 8) intron (NR_131171, intron 6 of 8) -6084 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 30493 chrX 12008038 12008115 + 0 NA Intergenic Intergenic -130390 NM_014728 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 28444 chr8 115101049 115101109 + 0 NA Intergenic Intergenic 566933 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 16958 chr2 205650455 205650559 + 0 NA Intergenic Intergenic -31993 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 6408 chr11 134050653 134050757 + 0 NA Intergenic Intergenic -18220 NM_001205329 83700 Hs.150718 NM_032801 ENSG00000166086 JAM3 JAM-2|JAM-3|JAM-C|JAMC junctional adhesion molecule 3 protein-coding 9753 chr14 105248407 105248538 + 0 NA promoter-TSS (NM_033271) promoter-TSS (NM_033271) -70 NM_033271 90135 Hs.7367 NM_033271 ENSG00000184887 BTBD6 BDPL BTB domain containing 6 protein-coding 6909 chr12 44948766 44948910 + 0 NA Intergenic Intergenic -34910 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 15262 chr2 28544757 28544909 + 0 NA intron (NM_153021, intron 14 of 57) intron (NM_153021, intron 14 of 57) -21524 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 10828 chr15 101542748 101542783 + 0 NA Intergenic Intergenic -52781 NM_138322 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 9921 chr15 40234330 40234434 + 0 NA intron (NM_001128629, intron 1 of 9) intron (NM_001128629, intron 1 of 9) -4709 NM_001276718 56924 Hs.732375 NM_020168 ENSG00000137843 PAK6 PAK5 p21 (RAC1) activated kinase 6 protein-coding 3384 chr10 21364522 21364691 + 0 NA Intergenic LTR88b|LTR|Gypsy? 132035 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 19956 chr3 117629162 117629266 + 0 NA Intergenic Intergenic 707783 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 19547 chr3 52406360 52406420 + 0 NA intron (NM_004656, intron 8 of 16) intron (NM_004656, intron 8 of 16) 3715 NM_004656 8314 Hs.106674 NM_004656 ENSG00000163930 BAP1 HUCEP-13|UCHL2|hucep-6 BRCA1 associated protein 1 protein-coding 30516 chrX 15475114 15475297 + 0 NA intron (NM_003662, intron 3 of 9) intron (NM_003662, intron 3 of 9) 16104 NR_037859 100532742 Hs.495728 NR_037859 PIR-FIGF - PIR-FIGF readthrough ncRNA 28084 chr8 80534546 80534652 + 0 NA Intergenic Intergenic 48386 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 29551 chr9 92635070 92635145 + 0 NA intron (NM_022755, intron 10 of 12) intron (NM_022755, intron 10 of 12) 17057 NR_036505 100128361 Hs.660395 NR_036505 LOC100128361 - uncharacterized LOC100128361 ncRNA 1305 chr1 92080394 92080453 + 0 NA 5' UTR (NM_183242, exon 1 of 9) 5' UTR (NM_183242, exon 1 of 9) 118 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 20222 chr3 136752583 136752733 + 0 NA promoter-TSS (NM_005862) promoter-TSS (NM_005862) -255 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 12111 chr17 12024459 12024563 + 0 NA intron (NM_003010, intron 1 of 10) intron (NM_003010, intron 1 of 10) 3693 NM_003010 6416 Hs.514681 NM_003010 ENSG00000065559 MAP2K4 JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1 mitogen-activated protein kinase kinase 4 protein-coding 14657 chr19 48714143 48714258 + 0 NA intron (NM_001297753, intron 4 of 6) CpG 2757 NM_182574 284358 Hs.191815 NM_182574 ENSG00000176909 MAMSTR MASTR MEF2 activating motif and SAP domain containing transcriptional regulator protein-coding 22373 chr5 35890731 35890835 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR 33908 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 12825 chr17 62893119 62893223 + 0 NA Intergenic Intergenic -51044 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 25176 chr6 134174947 134175009 + 0 NA promoter-TSS (NM_001291995) promoter-TSS (NM_001291995) -82 NM_001291995 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 24226 chr6 26204500 26204602 + 0 NA promoter-TSS (NM_003545) promoter-TSS (NM_003545) -94 NM_003545 8367 Hs.662174 NM_003545 ENSG00000276966 HIST1H4E H4/j|H4FJ histone cluster 1 H4 family member e protein-coding 2686 chr1 215567986 215568090 + 0 NA intron (NM_016121, intron 1 of 17) intron (NM_016121, intron 1 of 17) 659 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 3234 chr10 5623156 5623363 + 0 NA Intergenic Intergenic -27141 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 21946 chr4 158374435 158374525 + 0 NA Intergenic Intergenic -147234 NM_001253730 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin/insulin like family peptide receptor 1 protein-coding 16281 chr2 127526797 127526807 + 0 NA promoter-TSS (NM_017969) promoter-TSS (NM_017969) -291 NM_017969 55677 Hs.469879 NM_017969 ENSG00000163166 IWS1 - IWS1, SUPT6H interacting protein protein-coding 8802 chr14 31927398 31927502 + 0 NA Intergenic Intergenic 149249 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 16946 chr2 203579153 203579257 + 0 NA Intergenic Intergenic -43869 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 28130 chr8 85840910 85841014 + 0 NA Intergenic Intergenic -13020 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 27848 chr8 54022324 54022460 + 0 NA promoter-TSS (NM_201437) promoter-TSS (NM_201437) 64 NM_201437 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 4916 chr11 16154806 16154910 + 0 NA intron (NM_001145811, intron 6 of 14) intron (NM_001145811, intron 6 of 14) -185237 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 20281 chr3 141275064 141275204 + 0 NA intron (NM_001282728, intron 3 of 6) intron (NM_001282728, intron 3 of 6) 43309 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 16232 chr2 120443006 120443110 + 0 NA Intergenic CpG 23291 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 9769 chr14_GL000225v1_random 66215 66369 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 24956 chr6 104625649 104625790 + 0 NA Intergenic Intergenic 233827 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 24171 chr6 20631045 20631191 + 0 NA intron (NM_017774, intron 4 of 15) intron (NM_017774, intron 4 of 15) 96661 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 8870 chr14 35533915 35534019 + 0 NA promoter-TSS (NM_032594) promoter-TSS (NM_032594) -75 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 21664 chr4 105473453 105473588 + 0 NA intron (NM_176866, intron 1 of 7) CpG 550 NM_176866 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 12368 chr17 35315476 35315582 + 0 NA Intergenic L1M7|LINE|L1 58172 NM_001104589 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 24966 chr6 106086282 106086431 + 0 NA promoter-TSS (NM_001198) promoter-TSS (NM_001198) 36 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 19572 chr3 56783989 56784124 + 0 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -8339 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 10733 chr15 92981620 92981724 + 0 NA intron (NM_001271, intron 24 of 38) intron (NM_001271, intron 24 of 38) 77273 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA 28782 chr8 141338789 141338907 + 0 NA Intergenic Intergenic -1701 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 30112 chr9 125536303 125536407 + 0 NA intron (NM_001006618, intron 7 of 7) intron (NM_001006618, intron 7 of 7) 170879 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 22363 chr5 34929324 34929509 + 0 NA promoter-TSS (NM_001012339) promoter-TSS (NM_001012339) -177 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 21434 chr4 72112636 72112740 + 0 NA intron (NM_001144756, intron 2 of 4) intron (NM_001144756, intron 2 of 4) 73556 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 6900 chr12 43370334 43370350 + 0 NA intron (NM_025003, intron 36 of 38) MER63A|DNA|hAT-Blackjack 181579 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 18894 chr22 38348318 38348422 + 0 NA intron (NR_002821, intron 4 of 4) intron (NR_002821, intron 4 of 4) -30286 NM_001894 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 13323 chr18 23503238 23503324 + 0 NA promoter-TSS (NM_001318707) promoter-TSS (NM_001318707) -189 NM_013326 29919 Hs.464779 NM_013326 ENSG00000141452 C18orf8 HsT2591|MIC1|Mic-1 chromosome 18 open reading frame 8 protein-coding 22269 chr5 16493344 16493492 + 0 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) 15580 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 FAM134B JK-1|JK1 family with sequence similarity 134 member B protein-coding 6591 chr12 10212276 10212441 + 0 NA promoter-TSS (NM_031412) promoter-TSS (NM_031412) -532 NM_031412 23710 Hs.524250 NM_031412 ENSG00000139112 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA type A receptor associated protein like 1 protein-coding 25534 chr7 1075939 1076050 + 0 NA intron (NM_032350, intron 2 of 4) L1M4a2|LINE|L1 -10813 NM_001505 2852 Hs.20961 NM_001505 ENSG00000164850 GPER1 CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER G protein-coupled estrogen receptor 1 protein-coding 23006 chr5 110853463 110853513 + 0 NA Intergenic Intergenic 114516 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 27152 chr7 142854235 142854384 + 0 NA promoter-TSS (NM_001280794).2 promoter-TSS (NM_001280794).2 -705 NM_001280794 2051 Hs.380089 NM_004445 ENSG00000106123 EPHB6 HEP EPH receptor B6 protein-coding 20655 chr3 171876062 171876139 + 0 NA TTS (NR_046852) TTS (NR_046852) 24640 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 20289 chr3 141477336 141477434 + 0 NA Intergenic Intergenic -9662 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 19814 chr3 106728485 106728608 + 0 NA Intergenic Intergenic 512092 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 14161 chr19 13306799 13306854 + 0 NA intron (NM_000068, intron 15 of 46) MER74A|LTR|ERVL 156358 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 13733 chr18 66867753 66867857 + 0 NA Intergenic Intergenic -213779 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 14804 chr19 55210290 55210295 + 0 NA promoter-TSS (NM_002842) promoter-TSS (NM_002842) -786 NM_001161440 5794 Hs.179770 NM_002842 ENSG00000080031 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type H protein-coding 30697 chrX 48917344 48917368 + 0 NA intron (NM_006875, intron 3 of 5) intron (NM_006875, intron 3 of 5) 1780 NM_006875 11040 Hs.727148 NM_006875 ENSG00000102096 PIM2 - Pim-2 proto-oncogene, serine/threonine kinase protein-coding 17882 chr20 33720377 33720421 + 0 NA promoter-TSS (NM_007238) promoter-TSS (NM_007238) -69 NM_183397 11264 Hs.654857 NM_007238 ENSG00000101417 PXMP4 PMP24 peroxisomal membrane protein 4 protein-coding 24605 chr6 43798989 43799074 + 0 NA Intergenic Intergenic 27046 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 19832 chr3 108131210 108131360 + 0 NA intron (NR_110028, intron 1 of 2) MIRc|SINE|MIR 5464 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 5254 chr11 47578962 47579050 + 0 NA promoter-TSS (NM_001318716) promoter-TSS (NM_001318716) -4 NM_004551 4722 Hs.502528 NM_004551 ENSG00000213619 NDUFS3 CI-30 NADH:ubiquinone oxidoreductase core subunit S3 protein-coding 16792 chr2 186957193 186957297 + 0 NA Intergenic Intergenic -108075 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 6963 chr12 49069977 49070124 + 0 NA promoter-TSS (NM_001303126) promoter-TSS (NM_001303126) -25 NR_130123 121268 Hs.159013 NM_144593 ENSG00000167550 RHEBL1 RHEBL1c Ras homolog enriched in brain like 1 protein-coding 26632 chr7 96067524 96067628 + 0 NA intron (NM_001278422, intron 13 of 15) (CTACCT)n|Simple_repeat|Simple_repeat 152180 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 12929 chr17 71458428 71458532 + 0 NA Intergenic Intergenic -256301 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 9635 chr14 97499970 97500074 + 0 NA intron (NR_110166, intron 1 of 4) intron (NR_110166, intron 1 of 4) 41206 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LOC101929241 - uncharacterized LOC101929241 ncRNA 3279 chr10 11684879 11684983 + 0 NA Intergenic Intergenic -57426 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 3377 chr10 21264459 21264601 + 0 NA Intergenic Intergenic 90228 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 1076 chr1 67700877 67700981 + 0 NA TTS (NM_018841) TTS (NM_018841) 15752 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 766 chr1 43666803 43666923 + 0 NA intron (NM_014663, intron 7 of 21) MIRb|SINE|MIR 16737 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 24004 chr6 10139077 10139181 + 0 NA Intergenic Intergenic -273189 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 29958 chr9 115373495 115373602 + 0 NA intron (NM_017418, intron 4 of 7) intron (NM_017418, intron 4 of 7) 231730 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 25355 chr6 152273124 152273228 + 0 NA intron (NM_182961, intron 98 of 145) intron (NM_182961, intron 98 of 145) -87798 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 10178 chr15 58470056 58470155 + 0 NA intron (NR_120338, intron 2 of 2) AluJb|SINE|Alu 28630 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 16560 chr2 162091782 162091886 + 0 NA Intergenic L2c|LINE|L2 -17292 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 19535 chr3 52045707 52045843 + 0 NA Intergenic Intergenic 10670 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 17794 chr20 24018984 24019088 + 0 NA Intergenic Intergenic -30257 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 14587 chr19 46078726 46078794 + 0 NA Intergenic Intergenic -1131 NR_125344 400706 Hs.630811 NR_125344 ENSG00000204869 LOC400706 - uncharacterized LOC400706 ncRNA 30904 chrX 104318828 104318981 + 0 NA Intergenic MIR|SINE|MIR -63986 NM_153448 80712 Hs.223782 NM_153448 ENSG00000123576 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 11471 chr16 66378954 66378965 + 0 NA intron (NM_001795, intron 1 of 11) LTR22A|LTR|ERVK 12352 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 6254 chr11 123511319 123511423 + 0 NA intron (NM_001330396, intron 2 of 19) intron (NM_001330396, intron 2 of 19) 1492 NM_001330396 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 4484 chr10 119682191 119682329 + 0 NA Intergenic Intergenic 30890 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 25347 chr6 151452182 151452334 + 0 NA promoter-TSS (NM_001271937) promoter-TSS (NM_001271937) 0 NM_024573 79624 Hs.15929 NM_024573 ENSG00000146476 ARMT1 C6orf211 acidic residue methyltransferase 1 protein-coding 30021 chr9 120793334 120793492 + 0 NA promoter-TSS (NM_012164) promoter-TSS (NM_012164) 49 NM_012164 26190 Hs.494985 NM_012164 ENSG00000119402 FBXW2 FBW2|Fwd2|Md6 F-box and WD repeat domain containing 2 protein-coding 18216 chr20 51456531 51456728 + 0 NA intron (NM_001258295, intron 5 of 9) intron (NM_001258295, intron 5 of 9) -3652 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 21578 chr4 89753942 89753980 + 0 NA intron (NM_001146055, intron 4 of 5) intron (NM_001146055, intron 4 of 5) -82440 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 30566 chrX 23504327 23504431 + 0 NA Intergenic Intergenic -163149 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 29292 chr9 76394425 76394602 + 0 NA promoter-TSS (NM_018339) promoter-TSS (NM_018339) 15 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 18962 chr22 41688840 41688969 + 0 NA promoter-TSS (NM_005008) promoter-TSS (NM_005008) 5 NM_005008 4809 Hs.182255 NM_005008 ENSG00000100138 SNU13 15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) protein-coding 7265 chr12 72296497 72296643 + 0 NA intron (NM_013381, intron 2 of 18) intron (NM_013381, intron 2 of 18) -23061 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 25053 chr6 116557989 116558093 + 0 NA exon (NM_001256887, exon 4 of 4) exon (NM_001256887, exon 4 of 4) -12431 NM_001139444 100128327 Hs.134795 NM_001139444 ENSG00000173626 TRAPPC3L BET3L|bA259P20.2 trafficking protein particle complex 3 like protein-coding 17873 chr20 32819759 32819933 + 0 NA promoter-TSS (NM_012325) promoter-TSS (NM_012325) -47 NM_012325 22919 Hs.472437 NM_012325 ENSG00000101367 MAPRE1 EB1 microtubule associated protein RP/EB family member 1 protein-coding 9456 chr14 80435067 80435200 + 0 NA intron (NR_038355, intron 8 of 8) L1M1|LINE|L1 -204079 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 31153 chrX 151754185 151754219 + 0 NA Intergenic Intergenic 19456 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 22336 chr5 32059954 32060058 + 0 NA intron (NM_178140, intron 13 of 24) intron (NM_178140, intron 13 of 24) 114313 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 21076 chr3 197499609 197499713 + 0 NA Intergenic MIR|SINE|MIR 56326 NM_004051 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 15427 chr2 42810565 42810669 + 0 NA Intergenic CpG -18006 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 25465 chr6 165556621 165556746 + 0 NA intron (NM_001130690, intron 1 of 21) intron (NM_001130690, intron 1 of 21) 105417 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 10710 chr15 90660633 90660737 + 0 NA non-coding (NR_120371, exon 1 of 3) non-coding (NR_120371, exon 1 of 3) 451 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 21923 chr4 153486996 153487100 + 0 NA intron (NM_015196, intron 3 of 34) MER5A|DNA|hAT-Charlie 20702 NM_001131007 23240 Hs.732450 NM_015196 ENSG00000121210 KIAA0922 TMEM131L KIAA0922 protein-coding 24514 chr6 39115050 39115127 + 0 NA promoter-TSS (NM_001304793) promoter-TSS (NM_001304793) 98 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 25721 chr7 14895027 14895125 + 0 NA Intergenic Intergenic -53626 NM_004080 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 387 chr1 24866748 24866852 + 0 NA Intergenic Intergenic 52616 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 28607 chr8 125833179 125833273 + 0 NA Intergenic Intergenic 117971 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 22613 chr5 61658707 61658811 + 0 NA intron (NR_126524, intron 2 of 3) intron (NR_126524, intron 2 of 3) 20978 NR_126523 285668 Hs.683866 NM_173667 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 protein-coding 1913 chr1 160408531 160408544 + 0 NA intron (NM_020335, intron 1 of 7) intron (NM_020335, intron 1 of 7) 7963 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 4944 chr11 17267687 17267791 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -8979 NM_001330227 4925 Hs.654599 NM_005013 ENSG00000070081 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 18600 chr22 11030672 11030794 + 0 NA Intergenic AluY|SINE|Alu -69204 NR_132320 102723780 NR_132320 LOC102723780 - protein FRG1-like pseudo 15063 chr2 14632572 14632696 + 0 NA promoter-TSS (NM_145175) promoter-TSS (NM_145175) -49 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 27603 chr8 27636205 27636309 + 0 NA intron (NM_182826, intron 1 of 5) intron (NM_182826, intron 1 of 5) 2197 NM_016240 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding 19382 chr3 39180910 39181014 + 0 NA Intergenic CpG 11624 NM_194293 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 21323 chr4 44448978 44449082 + 0 NA promoter-TSS (NM_198353) promoter-TSS (NM_198353) -223 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 18909 chr22 39090600 39090753 + 0 NA Intergenic Intergenic -6548 NM_001166004 164668 Hs.440515 NM_181773 ENSG00000100298 APOBEC3H A3H|ARP-10|ARP10 apolipoprotein B mRNA editing enzyme catalytic subunit 3H protein-coding 17215 chr2 226982111 226982215 + 0 NA intron (NM_032276, intron 6 of 6) intron (NM_032276, intron 6 of 6) 146208 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RRP4 rhomboid domain containing 1 protein-coding 257 chr1 17369566 17369670 + 0 NA Intergenic Intergenic -2578 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 10118 chr15 52523308 52523412 + 0 NA intron (NM_000259, intron 1 of 40) intron (NM_000259, intron 1 of 40) 5690 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 9416 chr14 76953598 76953754 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -5962 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 25966 chr7 30308549 30308653 + 0 NA intron (NM_147128, intron 1 of 4) L1ME3B|LINE|L1 -18711 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 951 chr1 58881598 58881702 + 0 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 96499 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 24033 chr6 11093632 11093804 + 0 NA promoter-TSS (NM_001135575) promoter-TSS (NM_001135575) -315 NM_001135575 221710 Hs.656600 NM_001135575 ENSG00000224531 SMIM13 C6orf228 small integral membrane protein 13 protein-coding 21557 chr4 87220468 87220572 + 0 NA promoter-TSS (NM_001292003) promoter-TSS (NM_001292003) 88 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 4750 chr11 6603560 6603693 + 0 NA promoter-TSS (NM_015324) promoter-TSS (NM_015324) 24 NM_015324 23378 Hs.652255 NM_015324 ENSG00000132275 RRP8 KIAA0409|NML ribosomal RNA processing 8, methyltransferase, homolog (yeast) protein-coding 85 chr1 6489223 6489327 + 0 NA intron (NM_198681, intron 2 of 21) intron (NM_198681, intron 2 of 21) 1305 NM_001042664 57449 Hs.284232 NM_020631 ENSG00000171680 PLEKHG5 CMTRIC|DSMA4|GEF720|Syx|Tech pleckstrin homology and RhoGEF domain containing G5 protein-coding 25083 chr6 122696907 122697002 + 0 NA intron (NM_001270393, intron 6 of 7) LTR53|LTR|ERVL 44225 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 19922 chr3 114056560 114056694 + 0 NA promoter-TSS (NM_024638) promoter-TSS (NM_024638) -14 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 809 chr1 45803568 45803689 + 0 NA promoter-TSS (NM_001324320) promoter-TSS (NM_001324320) 15 NM_001319245 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 14823 chr19 55634917 55634983 + 0 NA Intergenic Intergenic -6076 NM_207115 51157 Hs.631551 NM_016202 ENSG00000213015 ZNF580 - zinc finger protein 580 protein-coding 30959 chrX 109281671 109281775 + 0 NA Intergenic Intergenic 200333 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 9469 chr14 81221060 81221179 + 0 NA promoter-TSS (NM_001278940) promoter-TSS (NM_001278940) -99 NR_135252 101928504 Hs.510068 NR_135252 LOC101928504 - uncharacterized LOC101928504 ncRNA 7580 chr12 106133278 106133382 + 0 NA intron (NM_014840, intron 1 of 6) intron (NM_014840, intron 1 of 6) 6703 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 19781 chr3 101984429 101984533 + 0 NA intron (NR_026934, intron 2 of 3) intron (NR_026934, intron 2 of 3) 43622 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 22990 chr5 108381409 108381538 + 0 NA exon (NM_001163315, exon 1 of 9) exon (NM_001163315, exon 1 of 9) 625 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 18758 chr22 29378048 29378136 + 0 NA intron (NM_145730, intron 1 of 20) intron (NM_145730, intron 1 of 20) 10491 NM_001127 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 beta 1 subunit protein-coding 30690 chrX 48704265 48704445 + 0 NA intron (NM_003173, intron 3 of 5) intron (NM_003173, intron 3 of 5) 7622 NM_003173 6839 Hs.522639 NM_003173 ENSG00000101945 SUV39H1 H3-K9-HMTase 1|KMT1A|MG44|SUV39H suppressor of variegation 3-9 homolog 1 protein-coding 17546 chr20 6591413 6591541 + 0 NA Intergenic Intergenic 164745 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility candidate 20 (non-protein coding) ncRNA 539 chr1 32013762 32013902 + 0 NA non-coding (NR_073498, exon 1 of 9) non-coding (NR_073498, exon 1 of 9) 138 NR_073498 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 5569 chr11 67659513 67659642 + 0 NA Intergenic LTR13|LTR|ERVK -8918 NM_080658 91703 Hs.126265 NM_080658 ENSG00000132744 ACY3 ACY-3|HCBP1 aminoacylase 3 protein-coding 24117 chr6 17233672 17233776 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -47854 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 23776 chr5 176448303 176448317 + 0 NA promoter-TSS (NM_014613) promoter-TSS (NM_014613) -45 NM_014613 23197 Hs.484242 NM_014613 ENSG00000113194 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 18283 chr20 55561346 55561450 + 0 NA Intergenic L1PA16|LINE|L1 -134201 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 17452 chr20 1830400 1830504 + 0 NA Intergenic Intergenic -50706 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 15904 chr2 85499178 85499282 + 0 NA Intergenic AluJb|SINE|Alu 39656 NR_038942 100630918 Hs.66049 NR_038942 PARTICL PARTICLE promoter of MAT2A antisense radiation-induced circulating long non-coding RNA ncRNA 8300 chr13 52617384 52617526 + 0 NA promoter-TSS (NM_001011724) promoter-TSS (NM_001011724) -15 NM_001011724 144983 Hs.447506 NM_001011724 ENSG00000139675 HNRNPA1L2 - heterogeneous nuclear ribonucleoprotein A1-like 2 protein-coding 19075 chr3 3126797 3126991 + 0 NA promoter-TSS (NM_001302946) promoter-TSS (NM_001302946) -22 NM_182916 51095 Hs.732725 NM_016000 ENSG00000072756 TRNT1 CCA1|CGI-47|MtCCA|RPEM|SIFD tRNA nucleotidyl transferase 1 protein-coding 25957 chr7 29622768 29622872 + 0 NA Intergenic Intergenic 57287 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 24415 chr6 33410254 33410391 + 0 NA promoter-TSS (NR_027692) promoter-TSS (NR_027692) -674 NM_002636 5252 Hs.166204 NM_002636 ENSG00000112511 PHF1 MTF2L2|PCL1|PHF2|TDRD19C|hPHF1 PHD finger protein 1 protein-coding 3339 chr10 15860410 15860536 + 0 NA promoter-TSS (NM_024948) promoter-TSS (NM_024948) 60 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 FAM188A C10orf97|CARP|DERP5|MST126|MSTP126|my042 family with sequence similarity 188 member A protein-coding 6347 chr11 129750850 129750980 + 0 NA Intergenic Intergenic -64866 NM_138788 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 4369 chr10 112519228 112519384 + 0 NA intron (NM_145206, intron 3 of 7) intron (NM_145206, intron 3 of 7) 72318 NR_134523 143187 Hs.194554 NM_145206 ENSG00000151532 VTI1A MMDS3|MVti1|VTI1RP2|Vti1-rp2 vesicle transport through interaction with t-SNAREs 1A protein-coding 21562 chr4 88007583 88007687 + 0 NA promoter-TSS (NM_000297) promoter-TSS (NM_000297) -12 NM_000297 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 18448 chr21 28992933 28993032 + 0 NA promoter-TSS (NM_015565) promoter-TSS (NM_015565) -23 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 520 chr1 31296875 31297014 + 0 NA promoter-TSS (NM_004814) promoter-TSS (NM_004814) -38 NM_001282573 51538 Hs.524094 NM_016505 ENSG00000121766 ZCCHC17 HSPC251|PS1D|pNO40 zinc finger CCHC-type containing 17 protein-coding 2865 chr1 226870556 226870629 + 0 NA promoter-TSS (NM_000447) promoter-TSS (NM_000447) 20 NM_000447 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 11055 chr16 15590977 15591136 + 0 NA Intergenic Intergenic 20039 NR_106761 102465252 NR_106761 ENSG00000166783 MIR6506 hsa-mir-6506 microRNA 6506 ncRNA 18937 chr22 40652761 40652865 + 0 NA Intergenic Intergenic -16094 NM_001282661 57591 Hs.654688 NM_020831 ENSG00000196588 MKL1 BSAC|MAL|MRTF-A megakaryoblastic leukemia (translocation) 1 protein-coding 13531 chr18 48456298 48456350 + 0 NA Intergenic Intergenic -46902 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 28823 chr8 143936654 143936748 + 0 NA intron (NM_201382, intron 5 of 31) intron (NM_201382, intron 5 of 31) 2889 NM_201384 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 26218 chr7 47361770 47361900 + 0 NA intron (NM_022748, intron 17 of 30) intron (NM_022748, intron 17 of 30) 220309 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 18352 chr20 59934092 59934196 + 0 NA promoter-TSS (NM_014258) promoter-TSS (NM_014258) 380 NM_001190826 63939 Hs.54973 NM_022106 ENSG00000196227 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217 member B protein-coding 4617 chr10 130136345 130136449 + 0 NA promoter-TSS (NM_001321980) promoter-TSS (NM_001321980) -12 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 25429 chr6 159726995 159727074 + 0 NA promoter-TSS (NM_152858) promoter-TSS (NM_152858) 36 NM_152858 9589 Hs.446091 NM_004906 ENSG00000146457 WTAP Mum2 Wilms tumor 1 associated protein protein-coding 16310 chr2 130181693 130181787 + 0 NA promoter-TSS (NM_025029) promoter-TSS (NM_025029) 17 NM_017951 55627 Hs.516450 NM_017751 ENSG00000136699 SMPD4 NET13|NSMASE-3|NSMASE3 sphingomyelin phosphodiesterase 4 protein-coding 14323 chr19 29610775 29610879 + 0 NA intron (NM_006627, intron 3 of 6) intron (NM_006627, intron 3 of 6) 4564 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 18181 chr20 50333943 50334047 + 0 NA Intergenic Intergenic -12653 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 5867 chr11 94011638 94011742 + 0 NA Intergenic L2c|LINE|L2 -9522 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin like 1 protein-coding 2354 chr1 200738672 200738776 + 0 NA promoter-TSS (NM_001297707) promoter-TSS (NM_001297707) -834 NM_001297708 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 22156 chr5 1936514 1936649 + 0 NA Intergenic L1ME2z|LINE|L1 49250 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 3479 chr10 27483165 27483244 + 0 NA Intergenic Intergenic -20970 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 22309 chr5 19315137 19315241 + 0 NA Intergenic MLT2B3|LTR|ERVL 571083 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 21423 chr4 68466305 68466409 + 0 NA intron (NM_014058, intron 2 of 9) intron (NM_014058, intron 2 of 9) 18908 NM_014058 28983 Hs.201877 NM_014058 ENSG00000087128 TMPRSS11E DESC1|TMPRSS11E2 transmembrane protease, serine 11E protein-coding 18636 chr22 19881180 19881356 + 0 NA intron (NM_006440, intron 12 of 17) intron (NM_006440, intron 12 of 17) -26329 NM_053004 54584 Hs.105642 NM_053004 ENSG00000185838 GNB1L DGCRK3|FKSG1|GY2|WDR14|WDVCF G protein subunit beta 1 like protein-coding 26450 chr7 76314332 76314459 + 0 NA Intergenic Intergenic 11837 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 13980 chr19 5680599 5680703 + 0 NA promoter-TSS (NM_001267868) promoter-TSS (NM_001267868) -114 NM_198533 374875 Hs.631840 NM_198533 ENSG00000167733 HSD11B1L 11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2 hydroxysteroid 11-beta dehydrogenase 1 like protein-coding 12029 chr17 7262602 7262706 + 0 NA 5' UTR (NM_001185023, exon 1 of 3) 5' UTR (NM_001185023, exon 1 of 3) 291 NM_001307 1366 Hs.513915 NM_001307 ENSG00000181885 CLDN7 CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1 claudin 7 protein-coding 22286 chr5 17145992 17146096 + 0 NA intron (NR_027253, intron 2 of 2) intron (NR_027253, intron 2 of 2) -70779 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 21552 chr4 86942424 86942508 + 0 NA intron (NM_001166693, intron 1 of 20) intron (NM_001166693, intron 1 of 20) 7464 NM_001166693 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 16465 chr2 151261771 151261864 + 0 NA promoter-TSS (NM_198557) promoter-TSS (NM_198557) 58 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 1421 chr1 101314357 101314461 + 0 NA Intergenic Intergenic -9428 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 29832 chr9 109345587 109345707 + 0 NA Intergenic Intergenic -24683 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 7819 chr12 123070731 123070837 + 0 NA intron (NM_001300801, intron 1 of 24) intron (NM_001300801, intron 1 of 24) -10600 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 LOC100507091 - uncharacterized LOC100507091 ncRNA 25850 chr7 23105681 23105846 + 0 NA promoter-TSS (NR_046220) promoter-TSS (NR_046220) 29 NR_033329 55975 Hs.654817 NM_018846 ENSG00000122550 KLHL7 CISS3|KLHL6|SBBI26 kelch like family member 7 protein-coding 27484 chr8 19578940 19579044 + 0 NA intron (NR_024040, intron 2 of 9) AluJr|SINE|Alu 23553 NM_001130518 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 25651 chr7 7221875 7222029 + 0 NA intron (NM_020156, intron 1 of 3) LTR16A2|LTR|ERVL -33202 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 25107 chr6 125202339 125202399 + 0 NA intron (NM_001003395, intron 1 of 6) intron (NM_001003395, intron 1 of 6) -1270 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 tumor protein D52-like 1 protein-coding 3021 chr1 235917586 235917745 + 0 NA Intergenic Intergenic -33957 NM_001301365 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 8340 chr13 72727607 72727754 + 0 NA promoter-TSS (NM_024808) promoter-TSS (NM_024808) -69 NM_024808 79866 Hs.643464 NM_024808 ENSG00000136122 BORA C13orf34 bora, aurora kinase A activator protein-coding 7895 chr12 131737236 131737376 + 0 NA intron (NM_004592, intron 7 of 17) intron (NM_004592, intron 7 of 17) 26219 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP homolog protein-coding 26739 chr7 102153374 102153502 + 0 NA intron (NM_181552, intron 8 of 23) L1MEh|LINE|L1 -131624 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 18475 chr21 32612503 32612645 + 0 NA promoter-TSS (NR_036552) promoter-TSS (NR_036552) 29 NR_036552 56683 Hs.5811 NM_017835 ENSG00000159079 C21orf59 C21orf48|CILD26|FBB18|Kur chromosome 21 open reading frame 59 protein-coding 14198 chr19 15216483 15216613 + 0 NA Intergenic Intergenic -15567 NM_000435 4854 Hs.8546 NM_000435 ENSG00000074181 NOTCH3 CADASIL|CADASIL1|CASIL|IMF2|LMNS notch 3 protein-coding 19109 chr3 5426457 5426561 + 0 NA Intergenic Intergenic -176254 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 5100 chr11 32707124 32707285 + 0 NA intron (NM_001008391, intron 3 of 17) intron (NM_001008391, intron 3 of 17) 87454 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 18176 chr20 50147100 50147204 + 0 NA intron (NM_199203, intron 1 of 7) intron (NM_199203, intron 1 of 7) 6646 NM_001162505 387521 Hs.744839 NM_199129 ENSG00000240849 TMEM189 KUA transmembrane protein 189 protein-coding 15643 chr2 62705545 62705565 + 0 NA promoter-TSS (NM_001142616) promoter-TSS (NM_001142616) -311 NM_015252 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 11951 chr17 4327780 4327884 + 0 NA intron (NM_003342, intron 1 of 5) intron (NM_003342, intron 1 of 5) 38842 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 930 chr1 57411440 57411544 + 0 NA intron (NM_021080, intron 3 of 16) intron (NM_021080, intron 3 of 16) -445352 NM_001278544 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 3848 chr10 71246876 71247025 + 0 NA intron (NM_170744, intron 1 of 16) MamRTE1|LINE|RTE-BovB -28722 NR_038453 728978 Hs.646725 NR_038453 ENSG00000237512 UNC5B-AS1 - UNC5B antisense RNA 1 ncRNA 20640 chr3 171156720 171156824 + 0 NA intron (NM_001161560, intron 12 of 31) intron (NM_001161560, intron 12 of 31) -50013 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 5274 chr11 57638249 57638353 + 0 NA Intergenic Intergenic -2897 NR_029673 406919 NR_029673 ENSG00000208009 MIR130A MIRN130A|miRNA130A|mir-130a microRNA 130a ncRNA 30380 chr9 137188653 137188807 + 0 NA promoter-TSS (NM_013366) promoter-TSS (NM_013366) -125 NM_013366 29882 Hs.533262 NM_013366 ENSG00000176248 ANAPC2 APC2 anaphase promoting complex subunit 2 protein-coding 28411 chr8 108248762 108248919 + 0 NA promoter-TSS (NM_001568) promoter-TSS (NM_001568) -110 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 648 chr1 37739361 37739476 + 0 NA intron (NM_001099439, intron 5 of 16) AluSz|SINE|Alu 25734 NM_001099439 284656 Hs.129435 NM_173641 ENSG00000183317 EPHA10 - EPH receptor A10 protein-coding 29171 chr9 70901173 70901321 + 0 NA intron (NM_001007471, intron 1 of 24) intron (NM_001007471, intron 1 of 24) -32189 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 21204 chr4 15894056 15894179 + 0 NA Intergenic L1ME3A|LINE|L1 44623 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 6627 chr12 12820055 12820235 + 0 NA intron (NM_201224, intron 2 of 10) intron (NM_201224, intron 2 of 10) 6799 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 15195 chr2 25673846 25673935 + 0 NA promoter-TSS (NM_001320934) promoter-TSS (NM_001320934) -243 NM_033148 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 18953 chr22 41403949 41404045 + 0 NA Intergenic Intergenic 22068 NM_003216 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF, PAR bZIP transcription factor protein-coding 12753 chr17 57557934 57558038 + 0 NA intron (NM_170721, intron 6 of 9) intron (NM_170721, intron 6 of 9) -34389 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 8522 chr13 102457469 102457608 + 0 NA Intergenic Intergenic -55110 NM_001321949 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 1589 chr1 117367369 117367473 + 0 NA promoter-TSS (NM_006699) promoter-TSS (NM_006699) -42 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 15648 chr2 63615159 63615318 + 0 NA Intergenic LTR19C|LTR|ERV1 26087 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 9744 chr14 104864320 104864424 + 0 NA promoter-TSS (NM_015005) promoter-TSS (NM_015005) -941 NM_001112726 283638 Hs.533721 NM_015005 ENSG00000099814 CEP170B CEP170R|FAM68C|KIAA0284 centrosomal protein 170B protein-coding 1059 chr1 66925410 66925511 + 0 NA promoter-TSS (NM_024763) promoter-TSS (NM_024763) 565 NM_001146112 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 30246 chr9 129824186 129824263 + 0 NA promoter-TSS (NM_000113) promoter-TSS (NM_000113) -62 NM_000113 1861 Hs.534312 NM_000113 ENSG00000136827 TOR1A DQ2|DYT1 torsin family 1 member A protein-coding 30387 chr9 137328321 137328469 + 0 NA intron (NM_017820, intron 17 of 21) intron (NM_017820, intron 17 of 21) -26144 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 15212 chr2 26696432 26696536 + 0 NA intron (NM_002246, intron 1 of 1) intron (NM_002246, intron 1 of 1) 3771 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 6698 chr12 16584008 16584112 + 0 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 21319 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 13880 chr19 1940880 1940903 + 0 NA promoter-TSS (NM_001319) promoter-TSS (NM_001319) -271 NM_001319 1455 Hs.651905 NM_001319 ENSG00000133275 CSNK1G2 CK1g2 casein kinase 1 gamma 2 protein-coding 5206 chr11 44445960 44446097 + 0 NA Intergenic Intergenic -119563 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 17736 chr20 20237399 20237503 + 0 NA intron (NM_015585, intron 18 of 26) intron (NM_015585, intron 18 of 26) -130670 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 10615 chr15 85494529 85494660 + 0 NA intron (NM_007200, intron 2 of 36) L2|LINE|L2 113978 NM_006738 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 24110 chr6 16712999 16713096 + 0 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) -48091 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 17902 chr20 34516369 34516390 + 0 NA promoter-TSS (NM_014183) promoter-TSS (NM_014183) -5 NM_001319157 83658 Hs.593920 NM_014183 ENSG00000125971 DYNLRB1 BITH|BLP|DNCL2A|DNLC2A|ROBLD1 dynein light chain roadblock-type 1 protein-coding 28752 chr8 135457415 135457519 + 0 NA promoter-TSS (NM_006558) promoter-TSS (NM_006558) 2 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 9980 chr15 42920813 42920964 + 0 NA promoter-TSS (NM_173500) promoter-TSS (NM_173500) -79 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 24115 chr6 16965002 16965106 + 0 NA Intergenic Intergenic -137204 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 16452 chr2 149732514 149732618 + 0 NA intron (NR_110240, intron 1 of 2) LTR8B|LTR|ERV1 -144750 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria and homocystinuria, cblD type protein-coding 22118 chr4 186728958 186729083 + 0 NA Intergenic L2c|LINE|L2 -5187 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 15548 chr2 54044047 54044151 + 0 NA intron (NM_001320587, intron 2 of 5) intron (NM_001320587, intron 2 of 5) -71174 NM_138448 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 6179 chr11 119018356 119018419 + 0 NA promoter-TSS (NM_001028) promoter-TSS (NM_001028) -40 NM_001028 6230 Hs.512676 NM_001028 ENSG00000118181 RPS25 S25 ribosomal protein S25 protein-coding 11650 chr16 75305605 75305647 + 0 NA intron (NM_006324, intron 5 of 6) MIR|SINE|MIR -37573 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 361 chr1 23800828 23800977 + 0 NA promoter-TSS (NM_000403) promoter-TSS (NM_000403) -98 NM_001008216 2582 Hs.632380 NM_000403 ENSG00000117308 GALE SDR1E1 UDP-galactose-4-epimerase protein-coding 16350 chr2 133844382 133844486 + 0 NA Intergenic Intergenic -275974 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 3282 chr10 11758242 11758255 + 0 NA intron (NM_024693, intron 4 of 4) intron (NM_024693, intron 4 of 4) 15891 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 24294 chr6 28985535 28985639 + 0 NA intron (NR_135289, intron 1 of 2) intron (NR_135289, intron 1 of 2) 838 NR_135289 414766 Hs.571153 NR_135289 HCG16 HCG15 HLA complex group 16 (non-protein coding) ncRNA 15878 chr2 84297349 84297396 + 0 NA Intergenic Intergenic 6690 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 28543 chr8 121811880 121812024 + 0 NA Intergenic Intergenic -170562 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 27169 chr7 143492083 143492215 + 0 NA intron (NR_033897, intron 2 of 4) intron (NR_033897, intron 2 of 4) 14276 NM_176883 259287 Hs.650648 NM_176883 ENSG00000221855 TAS2R41 T2R41|T2R59 taste 2 receptor member 41 protein-coding 18442 chr21 28393343 28393512 + 0 NA Intergenic LTR18A|LTR|ERVL -145891 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 24232 chr6 26336464 26336600 + 0 NA Intergenic MER90|LTR|ERV1 -28627 NM_001197249 11118 Hs.376046 NM_007047 ENSG00000186470 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin subfamily 3 member A2 protein-coding 1984 chr1 165169192 165169329 + 0 NA Intergenic Intergenic 186981 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 23472 chr5 148978522 148978689 + 0 NA Intergenic L2a|LINE|L2 83804 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 14309 chr19 20776148 20776240 + 0 NA Intergenic Intergenic -114598 NM_145297 199777 Hs.657001 NM_145297 ENSG00000188171 ZNF626 - zinc finger protein 626 protein-coding 7491 chr12 98352576 98352624 + 0 NA Intergenic Intergenic 104545 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 5558 chr11 67379702 67379806 + 0 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) -5577 NM_001166212 23529 Hs.502977 NM_013246 ENSG00000175505 CLCF1 BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6 cardiotrophin-like cytokine factor 1 protein-coding 24843 chr6 81753364 81753514 + 0 NA promoter-TSS (NM_017633) promoter-TSS (NM_017633) -728 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 FAM46A C6orf37|XTP11 family with sequence similarity 46 member A protein-coding 307 chr1 20508080 20508202 + 0 NA promoter-TSS (NM_024544) promoter-TSS (NM_024544) 40 NM_024544 79594 Hs.10101 NM_024544 ENSG00000090432 MUL1 C1orf166|GIDE|MAPL|MULAN|RNF218 mitochondrial E3 ubiquitin protein ligase 1 protein-coding 3472 chr10 27100506 27100610 + 0 NA promoter-TSS (NM_001256053) promoter-TSS (NM_001256053) -60 NM_014915 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 8333 chr13 67230401 67230529 + 0 NA promoter-TSS (NM_020403) promoter-TSS (NM_020403) -129 NM_203487 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 8630 chr13 111938125 111938276 + 0 NA Intergenic Intergenic -34110 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 LINC00403 - long intergenic non-protein coding RNA 403 ncRNA 26003 chr7 32943134 32943201 + 0 NA promoter-TSS (NR_003500) promoter-TSS (NR_003500) 3 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - retinitis pigmentosa 9 pseudogene pseudo 23987 chr6 8083505 8083542 + 0 NA intron (NM_004280, intron 3 of 3) intron (NM_004280, intron 3 of 3) 3010 NR_003703 100124533 NR_003703 SCARNA27 - small Cajal body-specific RNA 27 ncRNA 154 chr1 10635533 10635650 + 0 NA Intergenic Intergenic 160645 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 12552 chr17 44070630 44070792 + 0 NA promoter-TSS (NM_001319945) promoter-TSS (NM_001319945) -19 NR_028581 92579 Hs.294005 NM_138387 ENSG00000141349 G6PC3 SCN4|UGRP glucose-6-phosphatase catalytic subunit 3 protein-coding 29666 chr9 98193148 98193203 + 0 NA promoter-TSS (NM_052820) promoter-TSS (NM_052820) -501 NM_052820 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 16266 chr2 127064771 127064866 + 0 NA intron (NM_139349, intron 6 of 14) intron (NM_139349, intron 6 of 14) 17247 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 25561 chr7 2821510 2821614 + 0 NA intron (NM_007353, intron 1 of 3) intron (NM_007353, intron 1 of 3) -6303 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 5320 chr11 59756950 59757115 + 0 NA intron (NM_004177, intron 1 of 10) intron (NM_004177, intron 1 of 10) 1973 NM_004177 6809 Hs.180711 NM_004177 ENSG00000166900 STX3 STX3A syntaxin 3 protein-coding 18599 chr22 11030107 11030242 + 0 NA Intergenic AluSx1|SINE|Alu -68645 NR_132320 102723780 NR_132320 LOC102723780 - protein FRG1-like pseudo 5699 chr11 77411988 77412050 + 0 NA intron (NM_002576, intron 1 of 14) CpG 62044 NM_002576 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 PAKalpha p21 (RAC1) activated kinase 1 protein-coding 30017 chr9 120708943 120709098 + 0 NA intron (NM_001080497, intron 1 of 5) CR1-3_Croc|LINE|CR1 5467 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 2801 chr1 223846064 223846171 + 0 NA promoter-TSS (NM_001031685) promoter-TSS (NM_001031685) -145 NM_005426 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 21457 chr4 75514355 75514440 + 0 NA promoter-TSS (NM_001317791) promoter-TSS (NM_001317791) 33 NM_001278537 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 30327 chr9 133874238 133874395 + 0 NA intron (NM_003371, intron 2 of 26) intron (NM_003371, intron 2 of 26) 118008 NM_003371 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 30883 chrX 101098070 101098203 + 0 NA promoter-TSS (NM_001318521) promoter-TSS (NM_001318521) -46 NM_001318521 2491 Hs.348920 NM_006733 ENSG00000102384 CENPI CENP-I|FSHPRH1|LRPR1 centromere protein I protein-coding 19686 chr3 85170820 85170924 + 0 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -108608 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 9611 chr14 95314817 95314921 + 0 NA intron (NM_024734, intron 1 of 12) intron (NM_024734, intron 1 of 12) 5039 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 8863 chr14 35336836 35336985 + 0 NA Intergenic Intergenic 44593 NM_002791 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 25662 chr7 7694049 7694153 + 0 NA intron (NM_002947, intron 2 of 7) intron (NM_002947, intron 2 of 7) 24506 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 8373 chr13 76023816 76023920 + 0 NA Intergenic Intergenic 146982 NR_126373 104326189 Hs.671216 NR_126373 ENSG00000223458 LMO7DN-IT1 C13orf45-IT1|TCONS_00021569 LMO7DN intronic transcript 1 ncRNA 25692 chr7 12686647 12686758 + 0 NA promoter-TSS (NM_001037164) promoter-TSS (NM_001037164) -125 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 3062 chr1 240027094 240027198 + 0 NA Intergenic Intergenic 19622 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 25603 chr7 5563623 5563727 + 0 NA Intergenic Intergenic -29130 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 5 chr1 976431 976560 + 0 NA intron (NM_001291367, intron 4 of 4) CpG 5622 NM_001291366 84808 Hs.271462 NM_032722 ENSG00000187642 PERM1 C1orf170 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding 12760 chr17 57901502 57901667 + 0 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 1805 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 24626 chr6 45656105 45656105 + 0 NA Intergenic Intergenic 233528 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 12631 chr17 48892450 48892598 + 0 NA promoter-TSS (NM_001002027) promoter-TSS (NM_001002027) -262 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5G1 ATP5A|ATP5G ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) protein-coding 3455 chr10 25016500 25016637 + 0 NA promoter-TSS (NM_024838) promoter-TSS (NM_024838) -11 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 30366 chr9 136800215 136800319 + 0 NA intron (NM_001039374, intron 4 of 13) CpG-29156 3929 NM_001039374 84960 Hs.728796 NM_032874 ENSG00000213213 CCDC183 KIAA1984|PARF|bA216L13.7 coiled-coil domain containing 183 protein-coding 27259 chr7 155214545 155214649 + 0 NA Intergenic Intergenic -83175 NM_001346590 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 17810 chr20 25178990 25179139 + 0 NA Intergenic Intergenic -16606 NM_001322390 955 Hs.500375 NM_001247 ENSG00000197586 ENTPD6 CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3 ectonucleoside triphosphate diphosphohydrolase 6 (putative) protein-coding 9606 chr14 94919054 94919158 + 0 NA Intergenic BSR/Beta|Satellite|Satellite 148464 NR_144432 108868751 NR_144432 DIGIT - divergent to GSC, Induced by TGF-b family signaling ncRNA 29845 chr9 110152909 110152998 + 0 NA intron (NM_001136562, intron 2 of 3) intron (NM_001136562, intron 2 of 3) 27452 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|MISP2|PRKA2 A-kinase anchoring protein 2 protein-coding 28691 chr8 130649668 130649772 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -206060 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 5894 chr11 95089756 95089878 + 0 NA promoter-TSS (NM_015036) promoter-TSS (NM_015036) 7 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 552 chr1 32394531 32394689 + 0 NA promoter-TSS (NM_001143888) promoter-TSS (NM_001143888) -149 NM_018045 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 27583 chr8 26457918 26458022 + 0 NA Intergenic Intergenic 55997 NM_007257 10687 Hs.591838 NM_007257 ENSG00000240694 PNMA2 MA2|MM2|RGAG2 paraneoplastic Ma antigen 2 protein-coding 14085 chr19 10653867 10653990 + 0 NA promoter-TSS (NR_024333) promoter-TSS (NR_024333) -56 NR_024333 147727 Hs.631616 NR_024333 ENSG00000267100 ILF3-AS1 - ILF3 antisense RNA 1 (head to head) ncRNA 10031 chr15 45640794 45640898 + 0 NA intron (NM_021199, intron 1 of 9) intron (NM_021199, intron 1 of 9) 6106 NM_021199 58472 Hs.511251 NM_021199 ENSG00000137767 SQRDL CGI-44|PRO1975|SQOR sulfide quinone reductase-like (yeast) protein-coding 25100 chr6 124962150 124962164 + 0 NA promoter-TSS (NM_001286398) promoter-TSS (NM_001286398) -388 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 17297 chr2 233481878 233482005 + 0 NA intron (NM_018218, intron 29 of 30) intron (NM_018218, intron 29 of 30) 83649 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 11637 chr16 75012037 75012141 + 0 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 13072 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 4006 chr10 84494431 84494535 + 0 NA intron (NM_001284242, intron 6 of 6) MER41B|LTR|ERV1 69301 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 28271 chr8 98286398 98286502 + 0 NA intron (NR_135747, intron 1 of 11) intron (NR_135747, intron 1 of 11) 7943 NR_135745 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 17037 chr2 211837821 211837911 + 0 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 588494 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 20795 chr3 183291635 183291724 + 0 NA intron (NM_015078, intron 13 of 29) intron (NM_015078, intron 13 of 29) 38435 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 14742 chr19 51571141 51571237 + 0 NA promoter-TSS (NR_136208) promoter-TSS (NR_136208) -48 NM_007147 7728 Hs.119014 NM_007147 ENSG00000105497 ZNF175 OTK18 zinc finger protein 175 protein-coding 20060 chr3 124837804 124837979 + 0 NA intron (NM_002213, intron 5 of 14) intron (NM_002213, intron 5 of 14) 49414 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 15988 chr2 97850277 97850278 + 0 NA intron (NM_015348, intron 5 of 40) L1MEd|LINE|L1 115871 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 18856 chr22 36659803 36659979 + 0 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 42754 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 26476 chr7 78734787 78734891 + 0 NA intron (NM_012301, intron 2 of 21) MLT1H|LTR|ERVL-MaLR -274149 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 19085 chr3 4741776 4741880 + 0 NA intron (NM_002222, intron 40 of 57) intron (NM_002222, intron 40 of 57) 9762 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 18640 chr22 20021019 20021123 + 0 NA promoter-TSS (NM_001322175) promoter-TSS (NM_001322175) 2 NR_104275 128989 Hs.474233 NM_152906 ENSG00000183597 TANGO2 C22orf25|MECRCN transport and golgi organization 2 homolog protein-coding 5676 chr11 74988835 74988939 + 0 NA promoter-TSS (NM_006656) promoter-TSS (NM_006656) -18 NM_006656 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 24165 chr6 20237054 20237158 + 0 NA Intergenic Intergenic -24642 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 16379 chr2 137508965 137509069 + 0 NA intron (NM_001316349, intron 15 of 27) FordPrefect_a|DNA|hAT-Tip100 418915 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 15616 chr2 60674649 60674779 + 0 NA Intergenic Intergenic -81516 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 23637 chr5 160009030 160009156 + 0 NA promoter-TSS (NM_001282500) promoter-TSS (NM_001282500) -7 NM_001282500 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 299 chr1 20213057 20213191 + 0 NA Intergenic Intergenic -26638 NR_110078 101928017 Hs.550803 NR_110078 ENSG00000225986 UBXN10-AS1 - UBXN10 antisense RNA 1 ncRNA 18013 chr20 40689292 40689396 + 0 NA promoter-TSS (NM_005461) promoter-TSS (NM_005461) -104 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 8557 chr13 106104434 106104524 + 0 NA Intergenic Intergenic -272084 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 5952 chr11 100861378 100861458 + 0 NA intron (NM_152432, intron 4 of 23) L2|LINE|L2 -130662 NM_032021 83935 Hs.44004 NM_032021 ENSG00000170647 TMEM133 AD031 transmembrane protein 133 protein-coding 27948 chr8 64695684 64695788 + 0 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 103055 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 24820 chr6 79453657 79453783 + 0 NA Intergenic Intergenic 83710 NM_181714 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 LCA5, lebercilin protein-coding 28729 chr8 133406694 133406798 + 0 NA Intergenic Intergenic -109442 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 13914 chr19 2950678 2950796 + 0 NA Intergenic CpG -5766 NM_021217 58492 Hs.38004 NM_021217 ENSG00000175691 ZNF77 pT1 zinc finger protein 77 protein-coding 16608 chr2 167140896 167141000 + 0 NA promoter-TSS (NR_046665) promoter-TSS (NR_046665) 7 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 23476 chr5 149002164 149002280 + 0 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 60187 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 1350 chr1 94862852 94862965 + 0 NA intron (NM_152369, intron 9 of 13) intron (NM_152369, intron 9 of 13) 42364 NM_152369 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 29168 chr9 70484690 70484794 + 0 NA Intergenic Intergenic -70085 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 25150 chr6 130308102 130308184 + 0 NA intron (NM_001258275, intron 2 of 13) intron (NM_001258275, intron 2 of 13) 57282 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 12273 chr17 28743160 28743266 + 0 NA promoter-TSS (NM_004295) promoter-TSS (NM_004295) -792 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding 10589 chr15 83733338 83733506 + 0 NA intron (NM_207517, intron 3 of 29) intron (NM_207517, intron 3 of 29) 79336 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 19163 chr3 11530219 11530323 + 0 NA intron (NM_001136031, intron 17 of 17) intron (NM_001136031, intron 17 of 17) 38653 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 13783 chr18 74746203 74746307 + 0 NA intron (NM_001146189, intron 2 of 6) Tigger3b|DNA|TcMar-Tigger 115292 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 7739 chr12 119988850 119988974 + 0 NA promoter-TSS (NM_207311) promoter-TSS (NM_207311) -932 NM_207311 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 24467 chr6 36594169 36594232 + 0 NA promoter-TSS (NR_036610) promoter-TSS (NR_036610) -113 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 16107 chr2 109332633 109332737 + 0 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -19060 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 1240 chr1 87140986 87141090 + 0 NA intron (NR_026989, intron 2 of 2) intron (NR_026989, intron 2 of 2) 9112 NR_026985 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 26610 chr7 93890775 93890879 + 0 NA promoter-TSS (NR_134235) promoter-TSS (NR_134235) -67 NR_134235 105375401 Hs.438231 NR_134235 ENSG00000234695 LOC105375401 - uncharacterized LOC105375401 ncRNA 8276 chr13 50245112 50245189 + 0 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 73132 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 pseudo 10155 chr15 56465073 56465214 + 0 NA promoter-TSS (NM_018365) promoter-TSS (NM_018365) -6 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 23784 chr5 177133983 177134087 + 0 NA intron (NM_022455, intron 1 of 22) CpG-22851 203 NM_022455 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 7568 chr12 104604117 104604305 + 0 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 12578 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 3470 chr10 26869634 26869780 + 0 NA Intergenic Intergenic -8620 NM_001178121 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 30149 chr9 127574569 127574673 + 0 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 4386 NM_001035534 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 17025 chr2 209642531 209642638 + 0 NA intron (NM_001039538, intron 4 of 14) intron (NM_001039538, intron 4 of 14) 62905 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 12090 chr17 9575781 9575916 + 0 NA promoter-TSS (NM_001080556) promoter-TSS (NM_001080556) 110 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 10323 chr15 67039794 67039924 + 0 NA intron (NR_135686, intron 2 of 5) LTR16C|LTR|ERVL 24323 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 30719 chrX 49269202 49269250 + 0 NA promoter-TSS (NM_001184745) promoter-TSS (NM_001184745) -617 NM_033215 89801 Hs.433652 NM_033215 ENSG00000049769 PPP1R3F HB2E|LL0XNC01-7P3.1|R3F protein phosphatase 1 regulatory subunit 3F protein-coding 17210 chr2 226756195 226756353 + 0 NA intron (NM_005544, intron 1 of 1) intron (NM_005544, intron 1 of 1) 42516 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 11759 chr16 83926912 83927016 + 0 NA Intergenic AluSc|SINE|Alu -26258 NM_182981 29948 Hs.128055 NM_013370 ENSG00000140961 OSGIN1 BDGI|OKL38 oxidative stress induced growth inhibitor 1 protein-coding 10234 chr15 62060470 62060671 + 0 NA promoter-TSS (NM_017684) promoter-TSS (NM_017684) 67 NR_135690 101928907 Hs.552949 NR_135690 LOC101928907 - uncharacterized LOC101928907 ncRNA 13862 chr19 1407353 1407503 + 0 NA promoter-TSS (NM_018959) promoter-TSS (NM_018959) -141 NM_170711 26528 Hs.222510 NM_018959 ENSG00000071626 DAZAP1 - DAZ associated protein 1 protein-coding 7518 chr12 100267001 100267165 + 0 NA promoter-TSS (NR_135073) promoter-TSS (NR_135073) -4 NM_001319310 120863 Hs.653118 NM_152317 ENSG00000166153 DEPDC4 DEP.4 DEP domain containing 4 protein-coding 15180 chr2 24792957 24793112 + 0 NA promoter-TSS (NM_001322101) promoter-TSS (NM_001322101) -81 NR_136184 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 21219 chr4 19739129 19739233 + 0 NA Intergenic Intergenic -512724 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 10506 chr15 78860235 78860339 + 0 NA Intergenic Intergenic -12494 NM_001265603 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 30162 chr9 127981112 127981216 + 0 NA promoter-TSS (NM_001035254) promoter-TSS (NM_001035254) -631 NM_001035254 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 11601 chr16 71895454 71895509 + 0 NA promoter-TSS (NM_001270975) promoter-TSS (NM_001270975) -12 NM_001270979 9798 Hs.232194 NM_014761 ENSG00000182149 IST1 OLC1 IST1, ESCRT-III associated factor protein-coding 10668 chr15 89503323 89503427 + 0 NA Intergenic Intergenic -6762 NR_110261 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 8534 chr13 102911438 102911603 + 0 NA Intergenic Intergenic 31421 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 4719 chr11 4182190 4182353 + 0 NA Intergenic Intergenic -4881 NR_047550 100506082 Hs.445705 NR_047550 ENSG00000254480 LOC100506082 - uncharacterized LOC100506082 ncRNA 673 chr1 39117071 39117223 + 0 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 32980 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 3322 chr10 14648554 14648590 + 0 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -44154 NM_001282696 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 17603 chr20 11117910 11118014 + 0 NA Intergenic Intergenic 155421 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 15539 chr2 53353450 53353655 + 0 NA Intergenic L1PBa|LINE|L1 -414231 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 4204 chr10 99921982 99922194 + 0 NA intron (NM_015221, intron 4 of 16) intron (NM_015221, intron 4 of 16) -5121 NR_024130 100188954 Hs.656104 NR_024130 DNMBP-AS1 NCRNA00093|bA287G8.2 DNMBP antisense RNA 1 ncRNA 19529 chr3 51671265 51671363 + 0 NA promoter-TSS (NR_103463) promoter-TSS (NR_103463) 40 NM_001243725 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264 protein-coding 11037 chr16 13436664 13436763 + 0 NA Intergenic LTR31|LTR|ERV1 -483444 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 12886 chr17 67377143 67377269 + 0 NA promoter-TSS (NM_012417) promoter-TSS (NM_012417) -75 NM_181671 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 14303 chr19 19668673 19668777 + 0 NA promoter-TSS (NM_033204) promoter-TSS (NM_033204) -63 NM_033204 94039 Hs.63187 NM_033204 ENSG00000181896 ZNF101 HZF12 zinc finger protein 101 protein-coding 28332 chr8 101245513 101245578 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -39481 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 9965 chr15 41917837 41917941 + 0 NA intron (NM_139265, intron 4 of 5) intron (NM_139265, intron 4 of 5) -3528 NR_120332 101928363 Hs.680195 NR_120332 EHD4-AS1 - EHD4 antisense RNA 1 ncRNA 2366 chr1 201296026 201296177 + 0 NA intron (NM_001005337, intron 2 of 13) intron (NM_001005337, intron 2 of 13) 12649 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 25408 chr6 157823178 157823293 + 0 NA promoter-TSS (NM_016224) promoter-TSS (NM_016224) 64 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 21212 chr4 17512201 17512232 + 0 NA promoter-TSS (NM_000320) promoter-TSS (NM_000320) 18 NM_001306140 5860 Hs.75438 NM_000320 ENSG00000151552 QDPR DHPR|PKU2|SDR33C1 quinoid dihydropteridine reductase protein-coding 11228 chr16 30572062 30572166 + 0 NA 5' UTR (NM_145271, exon 1 of 3) 5' UTR (NM_145271, exon 1 of 3) 293 NM_001024683 146542 Hs.301463 NM_145271 ENSG00000229809 ZNF688 - zinc finger protein 688 protein-coding 31019 chrX 120315838 120315942 + 0 NA Intergenic Intergenic -4354 NM_001104544 55026 Hs.437563 NM_017938 ENSG00000125355 TMEM255A FAM70A transmembrane protein 255A protein-coding 31208 chrY 10973546 10973700 + 0 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 1062825 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 18984 chr22 43015202 43015323 + 0 NA promoter-TSS (NM_001184970) promoter-TSS (NM_001184970) -84 NM_001184970 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 22099 chr4 184815127 184815292 + 0 NA intron (NM_001286711, intron 1 of 19) intron (NM_001286711, intron 1 of 19) -2950 NM_001286708 2180 Hs.406678 NM_001995 ENSG00000151726 ACSL1 ACS1|FACL1|FACL2|LACS|LACS1|LACS2 acyl-CoA synthetase long-chain family member 1 protein-coding 13693 chr18 62522871 62522871 + 0 NA promoter-TSS (NM_017742) promoter-TSS (NM_017742) -554 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 16571 chr2 162733075 162733205 + 0 NA intron (NM_173162, intron 2 of 7) intron (NM_173162, intron 2 of 7) -35796 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 13887 chr19 2096894 2096998 + 0 NA promoter-TSS (NM_130807) promoter-TSS (NM_130807) 77 NM_001039846 113177 Hs.424049 NM_052878 ENSG00000099840 IZUMO4 C19orf36|IMAGE:4215339 IZUMO family member 4 protein-coding 5469 chr11 65314812 65314916 + 0 NA promoter-TSS (NM_006779) promoter-TSS (NM_006779) 46 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding 11794 chr16 85720394 85720498 + 0 NA intron (NM_206967, intron 2 of 3) intron (NM_206967, intron 2 of 3) 21254 NR_031731 100302261 NR_031731 ENSG00000283416 MIR1910 MIRN1910|hsa-mir-1910|mir-1910 microRNA 1910 ncRNA 15506 chr2 47199109 47199173 + 0 NA intron (NR_110208, intron 4 of 4) intron (NR_110208, intron 4 of 4) -22205 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 5941 chr11 100515422 100515430 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -172250 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 3932 chr10 75409362 75409466 + 0 NA TTS (NR_024421) TTS (NR_024421) 257 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 25533 chr7 1044293 1044451 + 0 NA promoter-TSS (NM_001303473) promoter-TSS (NM_001303473) -201 NM_001303473 115330 Hs.585007 NM_138445 ENSG00000164849 GPR146 PGR8 G protein-coupled receptor 146 protein-coding 21311 chr4 41214435 41214597 + 0 NA 5' UTR (NM_004307, exon 1 of 18) 5' UTR (NM_004307, exon 1 of 18) 102 NM_001166050 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 28453 chr8 115738862 115738927 + 0 NA Intergenic L2c|LINE|L2 -69866 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 1730 chr1 151992732 151992794 + 0 NA intron (NM_002966, intron 1 of 2) intron (NM_002966, intron 1 of 2) 1475 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 3623 chr10 43648832 43648936 + 0 NA promoter-TSS (NM_006973) promoter-TSS (NM_006973) -6 NM_001324166 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 1316 chr1 93180410 93180564 + 0 NA promoter-TSS (NM_001306076) promoter-TSS (NM_001306076) 202 NM_001167830 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 22810 chr5 82365795 82365870 + 0 NA Intergenic LTR16A1|LTR|ERVL 86370 NM_001017971 92270 Hs.729805 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 12133 chr17 16028238 16028356 + 0 NA 3' UTR (NM_001271420, exon 10 of 10) 3' UTR (NM_001271420, exon 10 of 10) -28605 NM_001042697 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger SWIM-type containing 7 protein-coding 28722 chr8 133216636 133216757 + 0 NA intron (NM_001204869, intron 2 of 2) MIRb|SINE|MIR 25657 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 22397 chr5 38464337 38464413 + 0 NA 3' UTR (NM_001205301, exon 23 of 23) 3' UTR (NM_001205301, exon 23 of 23) 18899 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 20232 chr3 137768888 137768907 + 0 NA Intergenic CpG -3014 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 20483 chr3 156689653 156689757 + 0 NA intron (NM_001184718, intron 2 of 5) intron (NM_001184718, intron 2 of 5) 13041 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 30701 chrX 49043476 49043627 + 0 NA promoter-TSS (NM_006521) promoter-TSS (NM_006521) -34 NM_006521 7030 Hs.730740 NM_006521 ENSG00000068323 TFE3 RCCP2|RCCX1|TFEA|bHLHe33 transcription factor binding to IGHM enhancer 3 protein-coding 27854 chr8 54551758 54551862 + 0 NA Intergenic Intergenic -64257 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1, axonemal microtubule associated protein-coding 25088 chr6 122800472 122800576 + 0 NA intron (NM_006714, intron 3 of 7) intron (NM_006714, intron 3 of 7) 11475 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 8560 chr13 106156455 106156627 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -220022 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 4163 chr10 97571734 97571871 + 0 NA promoter-TSS (NM_001291218) promoter-TSS (NM_001291218) -639 NM_001291218 26287 Hs.73708 NM_020349 ENSG00000165887 ANKRD2 ARPP ankyrin repeat domain 2 protein-coding 28252 chr8 96493583 96493687 + 0 NA promoter-TSS (NM_002998) promoter-TSS (NM_002998) -19 NM_002998 6383 Hs.1501 NM_002998 ENSG00000169439 SDC2 CD362|HSPG|HSPG1|SYND2 syndecan 2 protein-coding 12569 chr17 44947723 44947873 + 0 NA promoter-TSS (NM_001264573) promoter-TSS (NM_001264573) -87 NM_001264573 146909 Hs.135094 NM_001080443 ENSG00000186185 KIF18B - kinesin family member 18B protein-coding 6992 chr12 50254542 50254692 + 0 NA intron (NM_016357, intron 1 of 10) intron (NM_016357, intron 1 of 10) -20405 NR_031625 100302220 NR_031625 ENSG00000221604 MIR1293 MIRN1293|hsa-mir-1293|mir-1293 microRNA 1293 ncRNA 5659 chr11 74154671 74154775 + 0 NA intron (NM_015531, intron 3 of 30) MER58A|DNA|hAT-Charlie 16296 NM_001286577 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 calcium dependent domain containing 3 protein-coding 3505 chr10 29863082 29863186 + 0 NA Intergenic Intergenic -126133 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 28199 chr8 93822464 93822578 + 0 NA Intergenic Intergenic 67677 NM_001142301 91147 Hs.116240 NM_153704 ENSG00000164953 TMEM67 JBTS6|MECKELIN|MKS3|NPHP11|TNEM67 transmembrane protein 67 protein-coding 5813 chr11 87173396 87173561 + 0 NA intron (NR_033149, intron 4 of 13) MIRb|SINE|MIR 135634 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 3712 chr10 58267969 58268116 + 0 NA promoter-TSS (NM_152230) promoter-TSS (NM_152230) -108 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 12036 chr17 7354290 7354460 + 0 NA promoter-TSS (NM_198154) promoter-TSS (NM_198154) -761 NM_001320436 339168 Hs.259432 NM_198154 ENSG00000182896 TMEM95 UNQ9390 transmembrane protein 95 protein-coding 4622 chr10 131622322 131622449 + 0 NA Intergenic Intergenic 167814 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 892 chr1 53957390 53957494 + 0 NA intron (NM_001256409, intron 3 of 8) intron (NM_001256409, intron 3 of 8) 11116 NM_001256409 115353 Hs.40094 NM_052940 ENSG00000116212 LRRC42 dJ167A19.4 leucine rich repeat containing 42 protein-coding 12122 chr17 14300944 14301095 + 0 NA promoter-TSS (NM_006041) promoter-TSS (NM_006041) -31 NM_006041 9953 Hs.48384 NM_006041 ENSG00000125430 HS3ST3B1 3-OST-3B|3OST3B1|h3-OST-3B heparan sulfate-glucosamine 3-sulfotransferase 3B1 protein-coding 29933 chr9 114691285 114691389 + 0 NA Intergenic Intergenic -9248 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 LOC100505478 - uncharacterized LOC100505478 protein-coding 29396 chr9 84136283 84136445 + 0 NA Intergenic Intergenic 72921 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 20751 chr3 180252781 180252885 + 0 NA Intergenic L1ME1|LINE|L1 -161340 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 6363 chr11 130448490 130448639 + 0 NA promoter-TSS (NM_139055) promoter-TSS (NM_139055) -410 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 7630 chr12 109573619 109573748 + 0 NA promoter-TSS (NM_000431) promoter-TSS (NM_000431) -12 NM_000431 4598 Hs.130607 NM_000431 ENSG00000110921 MVK LRBP|MK|MVLK|POROK3 mevalonate kinase protein-coding 546 chr1 32222278 32222382 + 0 NA promoter-TSS (NM_019118) promoter-TSS (NM_019118) 41 NR_133636 56063 Hs.272299 NM_019118 ENSG00000160055 TMEM234 AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7 transmembrane protein 234 protein-coding 8758 chr14 24242649 24242779 + 0 NA promoter-TSS (NM_001099274) promoter-TSS (NM_001099274) -40 NM_012461 26277 Hs.496191 NM_012461 ENSG00000092330 TINF2 DKCA3|TIN2 TERF1 interacting nuclear factor 2 protein-coding 22258 chr5 14809786 14809890 + 0 NA intron (NM_054027, intron 1 of 11) AmnSINE1|SINE|5S-Deu-L2 16174 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 15720 chr2 68336392 68336496 + 0 NA Intergenic L1ME3A|LINE|L1 -16393 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 11156 chr16 24729504 24729661 + 0 NA promoter-TSS (NM_001330520) promoter-TSS (NM_001330520) -146 NM_001330520 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 26416 chr7 74206690 74206741 + 0 NA Intergenic Intergenic -3042 NM_032464 7462 Hs.741249 NM_014146 ENSG00000086730 LAT2 HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5 linker for activation of T-cells family member 2 protein-coding 9002 chr14 52314172 52314276 + 0 NA promoter-TSS (NM_000956) promoter-TSS (NM_000956) -74 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 18574 chr21 43333475 43333579 + 0 NA Intergenic L2b|LINE|L2 -1488 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 26798 chr7 107506584 107506813 + 0 NA intron (NM_181733, intron 6 of 20) L1PB3|LINE|L1 36641 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 11767 chr16 84357440 84357536 + 0 NA Intergenic L1MD2|LINE|L1 -11035 NM_014861 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 29523 chr9 91131711 91131815 + 0 NA intron (NR_135306, intron 2 of 2) intron (NR_135306, intron 2 of 2) 12701 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 15981 chr2 96787071 96787175 + 0 NA intron (NM_020184, intron 1 of 6) intron (NM_020184, intron 1 of 6) -11155 NR_036074 100422928 NR_036074 ENSG00000264157 MIR3127 mir-3127 microRNA 3127 ncRNA 4072 chr10 91923850 91923878 + 0 NA promoter-TSS (NM_003972) promoter-TSS (NM_003972) -115 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 11452 chr16 61820597 61820701 + 0 NA intron (NM_001796, intron 6 of 11) intron (NM_001796, intron 6 of 11) 216186 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 1833 chr1 156061058 156061210 + 0 NA promoter-TSS (NM_020387) promoter-TSS (NM_020387) -15 NM_020387 57111 Hs.632469 NM_020387 ENSG00000132698 RAB25 CATX-8|RAB11C RAB25, member RAS oncogene family protein-coding 3298 chr10 13300052 13300205 + 0 NA promoter-TSS (NM_001037537) promoter-TSS (NM_001037537) 2 NM_006214 5264 Hs.498732 NM_006214 ENSG00000107537 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 23336 chr5 140107791 140107825 + 0 NA non-coding (NR_102741, exon 1 of 4) non-coding (NR_102741, exon 1 of 4) 204 NR_102741 100505636 Hs.438871 NR_102739 ENSG00000245146 LINC01024 MA-linc1 long intergenic non-protein coding RNA 1024 ncRNA 25813 chr7 20797878 20797893 + 0 NA Intergenic Intergenic -10996 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 13776 chr18 74185056 74185160 + 0 NA Intergenic Intergenic 36597 NM_014177 29090 Hs.532835 NM_014177 ENSG00000075336 TIMM21 C18orf55|HSPC154|TIM21 translocase of inner mitochondrial membrane 21 protein-coding 11611 chr16 72989716 72989820 + 0 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 58607 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 21383 chr4 55549980 55550084 + 0 NA Intergenic MIRb|SINE|MIR -3123 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 16808 chr2 189441028 189441165 + 0 NA promoter-TSS (NM_001303096) promoter-TSS (NM_001303096) -337 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 4874 chr11 13827050 13827131 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR 97773 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LOC101928132 - uncharacterized LOC101928132 ncRNA 29704 chr9 100505616 100505704 + 0 NA intron (NM_001198812, intron 2 of 9) MER20B|DNA|hAT-Charlie 32422 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 15458 chr2 44168008 44168148 + 0 NA promoter-TSS (NM_001033557) promoter-TSS (NM_001033557) -725 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 7152 chr12 57096322 57096432 + 0 NA TTS (NM_001330305) TTS (NM_001330305) 7483 NM_001330305 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding 28474 chr8 117669833 117669937 + 0 NA Intergenic Intergenic 149172 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 20641 chr3 171192534 171192638 + 0 NA intron (NM_001161560, intron 5 of 31) intron (NM_001161560, intron 5 of 31) -85827 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 25008 chr6 110509870 110509961 + 0 NA Intergenic MER41B|LTR|ERV1 -33274 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 16477 chr2 152421579 152421686 + 0 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 86395 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 11750 chr16 83533280 83533461 + 0 NA intron (NM_001257, intron 7 of 13) intron (NM_001257, intron 7 of 13) 25024 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 22966 chr5 104062912 104062999 + 0 NA Intergenic LTR8|LTR|ERV1 -500154 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 11225 chr16 30527484 30527533 + 0 NA promoter-TSS (NM_024671) promoter-TSS (NM_024671) -919 NM_024671 79724 Hs.85658 NM_024671 ENSG00000169957 ZNF768 - zinc finger protein 768 protein-coding 7544 chr12 102879309 102879413 + 0 NA intron (NM_000277, intron 3 of 12) intron (NM_000277, intron 3 of 12) 38242 NM_000277 5053 Hs.603740 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 24052 chr6 12328800 12328871 + 0 NA Intergenic L2a|LINE|L2 38539 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 10469 chr15 75661159 75661301 + 0 NA Intergenic Intergenic 12223 NM_001318146 257364 Hs.8705 NM_153271 ENSG00000173548 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 20042 chr3 123602407 123602561 + 0 NA intron (NR_038266, intron 1 of 2) LTR57|LTR|ERVL 16971 NR_121654 100506826 Hs.556600 NR_038266 ENSG00000239523 MYLK-AS1 - MYLK antisense RNA 1 ncRNA 21790 chr4 128288125 128288202 + 0 NA 5' UTR (NM_006320, exon 1 of 3) 5' UTR (NM_006320, exon 1 of 3) 666 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 27662 chr8 33104981 33105143 + 0 NA Intergenic Intergenic 368084 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 8489 chr13 98653494 98653598 + 0 NA Intergenic MIRc|SINE|MIR -76395 NM_001032296 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 5959 chr11 101914934 101915038 + 0 NA promoter-TSS (NM_020802) promoter-TSS (NM_020802) -29 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 26541 chr7 87323227 87323290 + 0 NA Intergenic MER61E|LTR|ERV1 22234 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 (non-protein coding) ncRNA 12046 chr17 7549408 7549495 + 0 NA intron (NM_172089, intron 1 of 10) intron (NM_172089, intron 1 of 10) 393 NM_003809 8742 Hs.54673 NM_003809 ENSG00000239697 TNFSF12 APO3L|DR3LG|TNLG4A|TWEAK tumor necrosis factor superfamily member 12 protein-coding 27183 chr7 147635458 147635562 + 0 NA intron (NM_014141, intron 12 of 23) L2a|LINE|L2 -36169 NR_133930 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 10816 chr15 100934986 100935090 + 0 NA intron (NM_024652, intron 2 of 33) intron (NM_024652, intron 2 of 33) -15755 NR_135828 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 2580 chr1 209840020 209840110 + 0 NA intron (NM_014388, intron 7 of 11) intron (NM_014388, intron 7 of 11) 12098 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 DIEXF C1orf107|DEF|DJ434O14.5|UTP25 digestive organ expansion factor homolog (zebrafish) protein-coding 30209 chr9 128912581 128912728 + 0 NA intron (NM_001127244, intron 3 of 3) intron (NM_001127244, intron 3 of 3) -8241 NM_174933 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 24844 chr6 81759946 81760156 + 0 NA Intergenic Intergenic -7340 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 FAM46A C6orf37|XTP11 family with sequence similarity 46 member A protein-coding 21644 chr4 102828202 102828235 + 0 NA promoter-TSS (NM_181887) promoter-TSS (NM_181887) -38 NM_181889 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 5125 chr11 34051602 34051656 + 0 NA promoter-TSS (NM_203364) promoter-TSS (NM_203364) -54 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 25313 chr6 149648486 149648590 + 0 NA 5' UTR (NM_001204076, exon 1 of 8) 5' UTR (NM_001204076, exon 1 of 8) 266 NM_007044 11104 Hs.450175 NM_007044 ENSG00000186625 KATNA1 - katanin catalytic subunit A1 protein-coding 289 chr1 19882186 19882275 + 0 NA promoter-TSS (NM_015207) promoter-TSS (NM_015207) -165 NM_015207 23252 Hs.374987 NM_015207 ENSG00000169914 OTUD3 DUBA4 OTU deubiquitinase 3 protein-coding 29020 chr9 31137338 31137401 + 0 NA Intergenic Intergenic 244121 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 13240 chr18 6836494 6836598 + 0 NA intron (NM_001010000, intron 1 of 16) MER54A|LTR|ERVL 2113 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 8844 chr14 34481148 34481252 + 0 NA Intergenic Intergenic -18938 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 30756 chrX 54808892 54809037 + 0 NA promoter-TSS (NM_201222) promoter-TSS (NM_201222) -96 NM_201222 10916 Hs.522665 NM_014599 ENSG00000102316 MAGED2 11B6|BARTS5|BCG-1|BCG1|HCA10|MAGE-D2 MAGE family member D2 protein-coding 11513 chr16 67893066 67893243 + 0 NA promoter-TSS (NM_006742) promoter-TSS (NM_006742) -118 NM_006742 5681 Hs.513683 NM_006742 ENSG00000159792 PSKH1 - protein serine kinase H1 protein-coding 25231 chr6 139765954 139766028 + 0 NA Intergenic Tigger19b|DNA|TcMar-Tigger -5082 NR_038399 100132735 Hs.62646 NR_038399 LOC100132735 - uncharacterized LOC100132735 ncRNA 18912 chr22 39205424 39205528 + 0 NA Intergenic Intergenic 35433 NM_033016 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 30647 chrX 44872833 44872937 + 0 NA promoter-TSS (NR_111960) promoter-TSS (NR_111960) -290 NR_111960 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 17512 chr20 4898367 4898512 + 0 NA intron (NM_203327, intron 6 of 16) intron (NM_203327, intron 6 of 16) -74794 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 1142 chr1 77683383 77683502 + 0 NA promoter-TSS (NM_015534) promoter-TSS (NM_015534) -15 NM_001308237 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 10791 chr15 98727726 98727830 + 0 NA intron (NM_001291858, intron 2 of 20) intron (NM_001291858, intron 2 of 20) -56648 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 29970 chr9 116002854 116002932 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -77795 NR_024032 58483 Hs.23367 NM_021208 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 5267 chr11 57324999 57325191 + 0 NA promoter-TSS (NM_033396) promoter-TSS (NM_033396) -156 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 4708 chr11 3422771 3422875 + 0 NA Intergenic CpG -30908 NR_044999 10821 Hs.637689 NR_044999 ENSG00000189398 OR7E12P HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021 olfactory receptor family 7 subfamily E member 12 pseudogene pseudo 1291 chr1 91021409 91021513 + 0 NA promoter-TSS (NM_016620) promoter-TSS (NM_016620) 47 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 2095 chr1 175023538 175023625 + 0 NA promoter-TSS (NM_022100) promoter-TSS (NM_022100) -126 NR_037606 63931 Hs.654858 NM_022100 ENSG00000120333 MRPS14 DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 6759 chr12 26126110 26126244 + 0 NA Intergenic CpG -1107 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 26614 chr7 94183441 94183629 + 0 NA Intergenic Intergenic -179153 NM_005868 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 5551 chr11 67312818 67312958 + 0 NA TTS (NM_017857) TTS (NM_017857) -4951 NR_024469 100130987 Hs.664585 NR_024469 LOC100130987 - uncharacterized LOC100130987 ncRNA 21230 chr4 21697752 21697856 + 0 NA promoter-TSS (NM_001035003) promoter-TSS (NM_001035003) -109 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 27330 chr8 6645034 6645138 + 0 NA 3' UTR (NM_001322042, exon 15 of 15) 3' UTR (NM_001322042, exon 15 of 15) -22866 NR_107022 102465861 NR_107022 ENSG00000276580 MIR8055 hsa-mir-8055 microRNA 8055 ncRNA 20621 chr3 169966670 169966822 + 0 NA promoter-TSS (NR_027622) promoter-TSS (NR_027622) -12 NR_027622 100128164 Hs.633070 NR_024409 ENSG00000239219 LOC100128164 - four and a half LIM domains 1 pseudogene pseudo 17918 chr20 35215292 35215396 + 0 NA Intergenic Intergenic -11392 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 5471 chr11 65354558 65354589 + 0 NA promoter-TSS (NM_145719) promoter-TSS (NM_145719) -238 NM_145719 220359 Hs.632121 NM_145719 ENSG00000173825 TIGD3 - tigger transposable element derived 3 protein-coding 17692 chr20 18137931 18137943 + 0 NA promoter-TSS (NM_001164811) promoter-TSS (NM_001164811) 82 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 homolog protein-coding 26142 chr7 43077979 43078076 + 0 NA Intergenic MER61A|LTR|ERV1 -34572 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 2629 chr1 212368070 212368218 + 0 NA intron (NM_018252, intron 7 of 7) L1MA4|LINE|L1 15326 NR_004389 692157 Hs.707958 NR_004389 ENSG00000201544 SNORA16B U98b small nucleolar RNA, H/ACA box 16B snoRNA 18396 chr20 63216260 63216353 + 0 NA promoter-TSS (NM_017798) promoter-TSS (NM_017798) -120 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 1668 chr1 149927769 149927901 + 0 NA TTS (NM_181873) TTS (NM_181873) 417 NM_005850 10262 Hs.516160 NM_005850 ENSG00000143368 SF3B4 AFD1|Hsh49|SAP49|SF3b49 splicing factor 3b subunit 4 protein-coding 12770 chr17 58219293 58219446 + 0 NA promoter-TSS (NM_017777) promoter-TSS (NM_017777) -64 NM_001321268 54903 Hs.408843 NM_017777 ENSG00000011143 MKS1 BBS13|JBTS28|MES|MKS|POC12 Meckel syndrome, type 1 protein-coding 8368 chr13 75724924 75725011 + 0 NA intron (NM_001306080, intron 2 of 30) intron (NM_001306080, intron 2 of 30) -35454 NM_001330583 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 29276 chr9 75964530 75964660 + 0 NA intron (NM_001190482, intron 2 of 36) intron (NM_001190482, intron 2 of 36) 73951 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 26872 chr7 116434847 116434951 + 0 NA Intergenic L2c|LINE|L2 -64702 NM_001206747 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 22576 chr5 57824164 57824314 + 0 NA Intergenic Intergenic 74923 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 19618 chr3 63725119 63725260 + 0 NA Intergenic Intergenic 72521 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 9427 chr14 77123663 77123764 + 0 NA Intergenic Intergenic 18078 NM_174976 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 22511 chr5 52987857 52987961 + 0 NA Intergenic Intergenic -1417 NM_002203 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 25327 chr6 150025564 150025659 + 0 NA promoter-TSS (NM_130900) promoter-TSS (NM_130900) -79 NM_130900 154064 Hs.558659 NM_130900 ENSG00000155918 RAET1L ULBP6 retinoic acid early transcript 1L protein-coding 23998 chr6 9405503 9405656 + 0 NA Intergenic Intergenic 753370 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 30039 chr9 121281965 121282035 + 0 NA non-coding (NR_103560, exon 1 of 1) non-coding (NR_103560, exon 1 of 1) 3530 NR_103560 57000 Hs.522373 NM_020250 ENSG00000235865 GSN-AS1 C9orf31|MOST2 GSN antisense RNA 1 ncRNA 31197 chrX 154762621 154762716 + 0 NA promoter-TSS (NM_001142463) promoter-TSS (NM_001142463) -74 NR_110023 1736 Hs.4747 NM_001363 ENSG00000130826 DKC1 CBF5|DKC|DKCX|NAP57|NOLA4|XAP101 dyskerin pseudouridine synthase 1 protein-coding 23655 chr5 163437537 163437538 + 0 NA promoter-TSS (NM_004060) promoter-TSS (NM_004060) -34 NM_199246 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 14708 chr19 49877424 49877456 + 0 NA promoter-TSS (NM_001098632) promoter-TSS (NM_001098632) 15 NM_001168222 79735 Hs.631587 NM_024682 ENSG00000104946 TBC1D17 - TBC1 domain family member 17 protein-coding 10437 chr15 74374479 74374583 + 0 NA Intergenic CpG -6791 NM_000781 1583 Hs.303980 NM_000781 ENSG00000140459 CYP11A1 CYP11A|CYPXIA1|P450SCC cytochrome P450 family 11 subfamily A member 1 protein-coding 5799 chr11 86524167 86524248 + 0 NA intron (NM_001014811, intron 3 of 13) intron (NM_001014811, intron 3 of 13) 147991 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 23891 chr6 2988623 2988727 + 0 NA intron (NR_026856, intron 1 of 2) CpG 708 NR_026856 401232 Hs.720158 NM_207495 LINC01011 - long intergenic non-protein coding RNA 1011 ncRNA 22229 chr5 13143725 13143829 + 0 NA Intergenic Intergenic 475918 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 21521 chr4 83114706 83114842 + 0 NA promoter-TSS (NM_016619) promoter-TSS (NM_016619) -16 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta specific 8 protein-coding 12338 chr17 33127958 33128062 + 0 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 135159 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 19520 chr3 50359532 50359692 + 0 NA promoter-TSS (NM_007024) promoter-TSS (NM_007024) -104 NM_007024 11070 Hs.91566 NM_007024 ENSG00000126062 TMEM115 PL6 transmembrane protein 115 protein-coding 17030 chr2 210188882 210188986 + 0 NA 3' UTR (NM_001608, exon 11 of 11) 3' UTR (NM_001608, exon 11 of 11) -17564 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 2207 chr1 183165038 183165181 + 0 NA Intergenic Intergenic -20930 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 29977 chr9 116154460 116154564 + 0 NA exon (NM_002581, exon 1 of 22) exon (NM_002581, exon 1 of 22) 720 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 9996 chr15 43776711 43776845 + 0 NA promoter-TSS (NM_001199877) promoter-TSS (NM_001199877) -318 NM_001199877 10169 Hs.424126 NM_005770 ENSG00000140264 SERF2 4F5REL|FAM2C|H4F5REL|HsT17089 small EDRK-rich factor 2 protein-coding 3754 chr10 62049212 62049316 + 0 NA promoter-TSS (NM_001244638) promoter-TSS (NM_001244638) 53 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 28488 chr8 118227594 118227698 + 0 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -115827 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 5283 chr11 57781673 57781809 + 0 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 19979 NM_001085467 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 21178 chr4 10611862 10611966 + 0 NA intron (NM_052964, intron 2 of 18) intron (NM_052964, intron 2 of 18) 72848 NM_052964 116449 Hs.678910 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 9407 chr14 76387270 76387397 + 0 NA intron (NM_004452, intron 1 of 10) intron (NM_004452, intron 1 of 10) 15986 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 16653 chr2 172085286 172085390 + 0 NA promoter-TSS (NM_178120) promoter-TSS (NM_178120) -142 NM_178120 1745 Hs.407015 NM_178120 ENSG00000144355 DLX1 - distal-less homeobox 1 protein-coding 5460 chr11 65117734 65117856 + 0 NA promoter-TSS (NM_014205) promoter-TSS (NM_014205) -57 NM_014205 741 Hs.121025 NM_014205 ENSG00000174276 ZNHIT2 C11orf5|FON zinc finger HIT-type containing 2 protein-coding 25138 chr6 128569823 128569927 + 0 NA Intergenic L2a|LINE|L2 -49201 NM_001291984 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type K protein-coding 25072 chr6 119147451 119147594 + 0 NA intron (NM_001288576, intron 1 of 15) MER89|LTR|ERV1 1671 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 13525 chr18 48227379 48227483 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) -90122 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 15709 chr2 67451618 67451704 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 54351 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 Ewing tumor associated antigen 1 protein-coding 29564 chr9 92954198 92954349 + 0 NA intron (NM_001083536, intron 1 of 17) intron (NM_001083536, intron 1 of 17) 6954 NM_001083536 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 10394 chr15 71295477 71295626 + 0 NA intron (NM_024817, intron 5 of 16) MIR3|SINE|MIR -106492 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 31029 chrX 122566074 122566178 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -618117 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 27300 chr7 158829592 158829715 + 0 NA promoter-TSS (NM_020728) promoter-TSS (NM_020728) -25 NM_020728 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 10126 chr15 52678859 52678954 + 0 NA promoter-TSS (NR_104457) promoter-TSS (NR_104457) -272 NM_019600 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 26747 chr7 102927299 102927387 + 0 NA intron (NR_105043, intron 10 of 20) intron (NR_105043, intron 10 of 20) 14446 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 19099 chr3 5018015 5018163 + 0 NA Intergenic Intergenic -38128 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 6646 chr12 13173640 13173745 + 0 NA Intergenic Intergenic -22976 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 15234 chr2 27409568 27409672 + 0 NA promoter-TSS (NM_177983) promoter-TSS (NM_177983) 63 NM_177983 5496 Hs.643951 NM_177983 ENSG00000115241 PPM1G PP2CG|PP2CGAMMA|PPP2CG protein phosphatase, Mg2+/Mn2+ dependent 1G protein-coding 5333 chr11 61129902 61130078 + 0 NA TTS (NM_017966) TTS (NM_017966) 27532 NM_014207 921 Hs.58685 NM_014207 ENSG00000110448 CD5 LEU1|T1 CD5 molecule protein-coding 5229 chr11 46121545 46121649 + 0 NA promoter-TSS (NM_001101802) promoter-TSS (NM_001101802) -163 NM_016621 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 27434 chr8 16409348 16409461 + 0 NA Intergenic LTR8B|LTR|ERV1 -216613 NM_138715 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 6620 chr12 12717189 12717293 + 0 NA promoter-TSS (NM_004064) promoter-TSS (NM_004064) -29 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 18523 chr21 37366576 37366601 + 0 NA promoter-TSS (NM_101395) promoter-TSS (NM_101395) -346 NM_001347721 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 23705 chr5 170745844 170745948 + 0 NA Intergenic MIRc|SINE|MIR -37823 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 20727 chr3 178706010 178706160 + 0 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 147385 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 27376 chr8 10152353 10152508 + 0 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 56878 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 17048 chr2 212919379 212919483 + 0 NA Intergenic Intergenic -6826 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 7889 chr12 130818723 130818839 + 0 NA intron (NM_194356, intron 3 of 10) CpG 20493 NM_194356 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 17247 chr2 230327060 230327263 + 0 NA promoter-TSS (NM_138402) promoter-TSS (NM_138402) -18 NM_138402 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 8294 chr13 52195622 52195699 + 0 NA Intergenic CpG -1193 NR_002816 100887750 Hs.553878 NR_002816 ENSG00000243406 MRPS31P5 MRPS31P3 mitochondrial ribosomal protein S31 pseudogene 5 pseudo 14413 chr19 38335658 38335824 + 0 NA promoter-TSS (NM_001330496) promoter-TSS (NM_001330496) -46 NM_001330496 57828 Hs.324335 NM_021185 ENSG00000099338 CATSPERG C19orf15 cation channel sperm associated auxiliary subunit gamma protein-coding 712 chr1 40967771 40967993 + 0 NA Intergenic L2a|LINE|L2 -11417 NR_125440 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|IMD24 CTP synthase 1 protein-coding 5706 chr11 77820844 77821017 + 0 NA promoter-TSS (NM_016578) promoter-TSS (NM_016578) -96 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 30963 chrX 109537007 109537161 + 0 NA promoter-TSS (NM_001242618) promoter-TSS (NM_001242618) -34 NM_001242618 55916 Hs.25010 NM_018698 ENSG00000101888 NXT2 P15-2 nuclear transport factor 2 like export factor 2 protein-coding 21695 chr4 109989251 109989322 + 0 NA intron (NM_001178130, intron 18 of 22) intron (NM_001178130, intron 18 of 22) 76402 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 23870 chr6 1641482 1641631 + 0 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 31110 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 2560 chr1 209398647 209398799 + 0 NA Intergenic Intergenic -30100 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene protein-coding 20814 chr3 184249572 184249724 + 0 NA promoter-TSS (NM_005787) promoter-TSS (NM_005787) -9 NM_014693 9718 Hs.146161 NM_014693 ENSG00000145194 ECE2 - endothelin converting enzyme 2 protein-coding 8637 chr13 112885949 112886053 + 0 NA 3' UTR (NM_015205, exon 30 of 30) 3' UTR (NM_015205, exon 30 of 30) 82637 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 28310 chr8 100789018 100789113 + 0 NA Intergenic L2c|LINE|L2 -66978 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 5764 chr11 85087030 85087157 + 0 NA intron (NM_001142699, intron 6 of 27) L2a|LINE|L2 -163672 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 16588 chr2 164841811 164841938 + 0 NA promoter-TSS (NM_001278461) promoter-TSS (NM_001278461) 294 NM_001278458 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 19230 chr3 18099128 18099232 + 0 NA intron (NM_001257177, intron 4 of 4) intron (NM_001257177, intron 4 of 4) 136608 NM_001257177 339862 Hs.652981 NM_001257177 LOC339862 - uncharacterized LOC339862 protein-coding 13349 chr18 26460849 26460961 + 0 NA intron (NM_001258222, intron 3 of 4) intron (NM_001258222, intron 3 of 4) 37910 NR_110762 100506787 Hs.734746 NR_110762 LINC01543 - long intergenic non-protein coding RNA 1543 ncRNA 12683 chr17 50707873 50708013 + 0 NA promoter-TSS (NM_052855) promoter-TSS (NM_052855) -34 NM_052855 91369 Hs.463426 NM_052855 ENSG00000154945 ANKRD40 - ankyrin repeat domain 40 protein-coding 10330 chr15 67107035 67107139 + 0 NA intron (NM_005902, intron 1 of 8) L2a|LINE|L2 -18629 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 10295 chr15 65286867 65287001 + 0 NA promoter-TSS (NM_001316943) promoter-TSS (NM_001316943) -91 NM_001316944 54956 Hs.30634 NM_017851 ENSG00000138617 PARP16 ARTD15|C15orf30|pART15 poly(ADP-ribose) polymerase family member 16 protein-coding 19321 chr3 33114439 33114552 + 0 NA exon (NM_006371, exon 1 of 7) exon (NM_006371, exon 1 of 7) 537 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 18879 chr22 37896250 37896437 + 0 NA intron (NR_039973, intron 1 of 1).4 intron (NR_039973, intron 1 of 1).4 -9805 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 17897 chr20 34349620 34349741 + 0 NA Intergenic Intergenic -13555 NM_001324197 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 8480 chr13 98484487 98484605 + 0 NA intron (NM_001032296, intron 2 of 10) intron (NM_001032296, intron 2 of 10) 37579 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 2593 chr1 210374439 210374593 + 0 NA intron (NM_001122834, intron 3 of 11) intron (NM_001122834, intron 3 of 11) 45220 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 14969 chr2 9555977 9556058 + 0 NA promoter-TSS (NM_003183) promoter-TSS (NM_003183) -197 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 10540 chr15 80696571 80696675 + 0 NA intron (NM_021214, intron 1 of 2) intron (NM_021214, intron 1 of 2) 1312 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 13585 chr18 51198267 51198352 + 0 NA promoter-TSS (NM_016626) promoter-TSS (NM_016626) -628 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 5670 chr11 74631827 74631873 + 0 NA intron (NM_006591, intron 9 of 11) intron (NM_006591, intron 9 of 11) 39245 NR_046410 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 10608 chr15 85318341 85318478 + 0 NA Intergenic Intergenic -62187 NR_106993 102465803 NR_106993 ENSG00000170776 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 2920 chr1 229893884 229893988 + 0 NA Intergenic Intergenic -108781 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 14368 chr19 35269618 35269722 + 0 NA exon (NM_001321150, exon 3 of 8) exon (NM_001321150, exon 3 of 8) 692 NM_207291 7392 Hs.454534 NM_003367 ENSG00000105698 USF2 FIP|bHLHb12 upstream transcription factor 2, c-fos interacting protein-coding 9003 chr14 52338454 52338558 + 0 NA Intergenic Intergenic 24208 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 13607 chr18 54357843 54358002 + 0 NA promoter-TSS (NM_001288980) promoter-TSS (NM_001288980) 5 NM_001288981 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 9258 chr14 67816566 67816689 + 0 NA promoter-TSS (NM_015346) promoter-TSS (NM_015346) -38 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 15931 chr2 86623786 86623970 + 0 NA promoter-TSS (NM_005667) promoter-TSS (NM_005667) -1 NM_005667 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 19100 chr3 5021808 5021910 + 0 NA Intergenic MIRb|SINE|MIR -41898 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 11608 chr16 72877669 72877697 + 0 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) 170692 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 20092 chr3 127304381 127304467 + 0 NA Intergenic Intergenic 86246 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 1159 chr1 79193577 79193681 + 0 NA Intergenic Intergenic -186819 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 27252 chr7 154804671 154804775 + 0 NA intron (NM_001936, intron 14 of 25) intron (NM_001936, intron 14 of 25) -123794 NR_024477 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 4512 chr10 121333019 121333123 + 0 NA Intergenic L2b|LINE|L2 198243 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 8614 chr13 110590726 110590756 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -24719 NR_040104 55739 Hs.408324 NM_018210 ENSG00000213995 NAXD CARKD|LP3298 NAD(P)HX dehydratase protein-coding 3110 chr1 244302982 244303125 + 0 NA Intergenic L1MC4|LINE|L1 -49582 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 8125 chr13 38319864 38319968 + 0 NA Intergenic LTR14C|LTR|ERVK -29855 NM_016617 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20 ubiquitin fold modifier 1 protein-coding 27372 chr8 10054216 10054320 + 0 NA promoter-TSS (NM_001135670) promoter-TSS (NM_001135670) -1 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 19306 chr3 31532505 31532673 + 0 NA promoter-TSS (NM_178862) promoter-TSS (NM_178862) 88 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3B, catalytic subunit of the oligosaccharyltransferase complex protein-coding 22481 chr5 44665201 44665305 + 0 NA Intergenic MER52A|LTR|ERV1 143540 NR_109863 100506674 Hs.575213 NR_109862 BRCAT54 - breast cancer-associated transcript 54 ncRNA 15584 chr2 55958476 55958580 + 0 NA Intergenic L2b|LINE|L2 24548 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 2332 chr1 199691660 199691764 + 0 NA Intergenic Intergenic -335890 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 20350 chr3 147943773 147943877 + 0 NA Intergenic MER39|LTR|ERV1 -134334 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 10784 chr15 98003746 98003850 + 0 NA Intergenic L2b|LINE|L2 43095 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 22384 chr5 36690462 36690616 + 0 NA Intergenic CpG 84184 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 15453 chr2 43996251 43996366 + 0 NA promoter-TSS (NM_133259) promoter-TSS (NM_133259) -303 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 1024 chr1 64343681 64343698 + 0 NA Intergenic Intergenic -127104 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 9900 chr15 39140037 39140182 + 0 NA Intergenic Intergenic -110560 NR_144507 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 2867 chr1 227318671 227318777 + 0 NA promoter-TSS (NM_003607) promoter-TSS (NM_003607) -599 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 9434 chr14 77457677 77457736 + 0 NA promoter-TSS (NM_012111) promoter-TSS (NM_012111) -66 NM_001193314 63894 Hs.16157 NM_022067 ENSG00000151445 VIPAS39 C14orf133|SPE-39|SPE39|VIPAR|VPS16B|hSPE-39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein-coding 30450 chrX 3384464 3384618 + 0 NA Intergenic Intergenic -37898 NM_015419 25878 Hs.369422 NM_015419 ENSG00000101825 MXRA5 - matrix remodeling associated 5 protein-coding 7842 chr12 124518258 124518394 + 0 NA intron (NM_001077261, intron 2 of 47) intron (NM_001077261, intron 2 of 47) 49138 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 21691 chr4 109703294 109703338 + 0 NA intron (NM_001226, intron 1 of 6) CpG 157 NM_001226 839 Hs.654616 NM_001226 ENSG00000138794 CASP6 MCH2 caspase 6 protein-coding 10333 chr15 67147086 67147265 + 0 NA intron (NM_001145103, intron 1 of 8) (GA)n|Simple_repeat|Simple_repeat 9154 NM_001145103 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 8269 chr13 49848011 49848057 + 0 NA Intergenic CpG -42375 NR_003268 220429 Hs.448219 NR_003268 ENSG00000181358 CTAGE10P - CTAGE family member 10, pseudogene pseudo 13 chr1 1157518 1157636 + 0 NA Intergenic Intergenic -9527 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B|mir-200b microRNA 200b ncRNA 9811 chr15 29939526 29939630 + 0 NA intron (NM_001301025, intron 2 of 28).2 intron (NM_001301025, intron 2 of 28).2 29221 NM_001301025 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 7942 chr13 20567377 20567465 + 0 NA intron (NM_001318491, intron 1 of 24) CpG 605 NM_175605 8100 Hs.187376 NM_006531 ENSG00000032742 IFT88 D13S1056E|DAF19|TG737|TTC10|hTg737 intraflagellar transport 88 protein-coding 14894 chr2 193385 193489 + 0 NA Intergenic Intergenic 62903 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 17746 chr20 21106248 21106296 + 0 NA Intergenic CpG -19711 NM_001163022 55857 Hs.187635 NM_018474 ENSG00000088970 KIZ C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69 kizuna centrosomal protein protein-coding 13978 chr19 5622811 5622909 + 0 NA promoter-TSS (NM_014649) promoter-TSS (NM_014649) 67 NM_014649 9667 Hs.655392 NM_014649 ENSG00000130254 SAFB2 - scaffold attachment factor B2 protein-coding 9192 chr14 63923189 63923356 + 0 NA intron (NM_182914, intron 2 of 115) intron (NM_182914, intron 2 of 115) 70307 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 597 chr1 34762727 34762758 + 0 NA 3' UTR (NM_153212, exon 2 of 2) 3' UTR (NM_153212, exon 2 of 2) 3001 NM_153212 127534 Hs.351203 NM_153212 ENSG00000189433 GJB4 CX30.3|EKV gap junction protein beta 4 protein-coding 11393 chr16 56318481 56318585 + 0 NA intron (NM_020988, intron 3 of 8) intron (NM_020988, intron 3 of 8) 73013 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 4372 chr10 112812062 112812205 + 0 NA intron (NM_001318205, intron 7 of 7) intron (NM_001318205, intron 7 of 7) -11363 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 26702 chr7 100428726 100428830 + 0 NA promoter-TSS (NM_001258008) promoter-TSS (NM_001258008) -12 NM_001194992 56257 Hs.178011 NM_019606 ENSG00000146834 MEPCE BCDIN3 methylphosphate capping enzyme protein-coding 14112 chr19 11346504 11346658 + 0 NA promoter-TSS (NM_001321114) promoter-TSS (NM_001321114) 76 NM_001080503 126075 Hs.631636 NM_001080503 ENSG00000183401 CCDC159 - coiled-coil domain containing 159 protein-coding 11451 chr16 61792422 61792540 + 0 NA intron (NM_001796, intron 7 of 11) intron (NM_001796, intron 7 of 11) 244354 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 28547 chr8 122166995 122167087 + 0 NA Intergenic Intergenic 401603 NR_131202 105375734 Hs.628341 NR_131202 LOC105375734 - uncharacterized LOC105375734 ncRNA 28936 chr9 14322476 14322580 + 0 NA intron (NM_001190738, intron 1 of 8) CpG -8482 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 11968 chr17 4790033 4790120 + 0 NA exon (NM_001014985, exon 4 of 4) exon (NM_001014985, exon 4 of 4) 1117 NM_001014985 388323 Hs.131035 NM_001014985 ENSG00000182327 GLTPD2 - glycolipid transfer protein domain containing 2 protein-coding 25884 chr7 25028697 25028766 + 0 NA Intergenic Intergenic -48519 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 25300 chr6 148342765 148342869 + 0 NA 5' UTR (NM_001346506, exon 1 of 21) 5' UTR (NM_001346506, exon 1 of 21) 224 NM_015278 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 22100 chr4 184825988 184826092 + 0 NA promoter-TSS (NM_001995) promoter-TSS (NM_001995) 74 NM_001995 2180 Hs.406678 NM_001995 ENSG00000151726 ACSL1 ACS1|FACL1|FACL2|LACS|LACS1|LACS2 acyl-CoA synthetase long-chain family member 1 protein-coding 19558 chr3 53145451 53145503 + 0 NA Intergenic Intergenic -15023 NM_052859 91869 Hs.631910 NM_052859 ENSG00000163933 RFT1 CDG1N RFT1 homolog protein-coding 12607 chr17 47821657 47821761 + 0 NA promoter-TSS (NM_145798) promoter-TSS (NM_145798) 72 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 30392 chr9 137551774 137551923 + 0 NA promoter-TSS (NM_032477) promoter-TSS (NM_032477) -9 NM_032477 64975 Hs.44017 NM_032477 ENSG00000182154 MRPL41 BMRP|MRP-L27|MRPL27|PIG3|RPML27 mitochondrial ribosomal protein L41 protein-coding 242 chr1 16905122 16905229 + 0 NA Intergenic CpG 9195 NR_004408 26869 NR_004408 ENSG00000207513 RNU1-3 HSD4|RNU1G3 RNA, U1 small nuclear 3 snRNA 32 chr1 1909024 1909175 + 0 NA Intergenic CpG -5728 NM_138705 163688 Hs.85902 NM_138705 ENSG00000169885 CALML6 CAGLP calmodulin like 6 protein-coding 15560 chr2 54673638 54673698 + 0 NA Intergenic Intergenic -51344 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - echinoderm microtubule associated protein like 6 protein-coding 15440 chr2 43184492 43184633 + 0 NA Intergenic MIRb|SINE|MIR 42044 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 443 chr1 27031705 27031824 + 0 NA Intergenic Intergenic -18922 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 FAM46B - family with sequence similarity 46 member B protein-coding 13960 chr19 4791537 4791641 + 0 NA promoter-TSS (NM_018708) promoter-TSS (NM_018708) -127 NM_018708 55527 Hs.515082 NM_018708 ENSG00000141965 FEM1A EPRAP fem-1 homolog A protein-coding 5611 chr11 70755647 70755767 + 0 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -93867 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 7338 chr12 82740503 82740536 + 0 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 53364 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 12939 chr17 72273427 72273501 + 0 NA Intergenic Intergenic -69347 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 22468 chr5 43397088 43397169 + 0 NA 5' UTR (NM_001301875, exon 1 of 3) 5' UTR (NM_001301875, exon 1 of 3) 136 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 12622 chr17 48048721 48048825 + 0 NA intron (NM_003204, intron 1 of 5) CpG 449 NM_003204 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 21007 chr3 194071224 194071328 + 0 NA promoter-TSS (NR_136179) promoter-TSS (NR_136179) -306 NR_136179 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 12444 chr17 39959048 39959202 + 0 NA Intergenic Intergenic -3848 NM_178171 284110 Hs.448873 NM_178171 ENSG00000167914 GSDMA FKSG9|GSDM|GSDM1 gasdermin A protein-coding 7449 chr12 94553270 94553334 + 0 NA Intergenic AluSx|SINE|Alu -8487 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 25141 chr6 128600470 128600567 + 0 NA Intergenic Intergenic -79844 NM_001291984 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type K protein-coding 30671 chrX 47556161 47556294 + 0 NA Intergenic Intergenic -4873 NM_001654 369 Hs.446641 NM_001654 ENSG00000078061 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 23493 chr5 149632597 149632633 + 0 NA 3' UTR (NM_001001669, exon 13 of 13) 3' UTR (NM_001001669, exon 13 of 13) 51043 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 30083 chr9 124392880 124393011 + 0 NA intron (NM_002799, intron 5 of 7) intron (NM_002799, intron 5 of 7) 22528 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 6854 chr12 33588190 33588230 + 0 NA Intergenic LTR73|LTR|ERV1 -148391 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 29785 chr9 107738209 107738313 + 0 NA Intergenic Intergenic -248541 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 15444 chr2 43293937 43294102 + 0 NA intron (NR_144316, intron 30 of 36) L3|LINE|CR1 66808 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 3519 chr10 31031914 31031935 + 0 NA promoter-TSS (NM_001143766) promoter-TSS (NM_001143766) 13 NM_001143766 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 21813 chr4 138199562 138199666 + 0 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 42735 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 21370 chr4 53591534 53591679 + 0 NA promoter-TSS (NM_001126328) promoter-TSS (NM_001126328) -20 NM_001126328 84708 Hs.518760 NM_032622 ENSG00000072201 LNX1 LNX|MPDZ|PDZRN2 ligand of numb-protein X 1 protein-coding 846 chr1 47894831 47894940 + 0 NA intron (NM_001194986, intron 2 of 6) L2a|LINE|L2 102005 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 15497 chr2 46968052 46968200 + 0 NA intron (NM_020458, intron 3 of 19) intron (NM_020458, intron 3 of 19) -26271 NM_001171511 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 30934 chrX 107628306 107628442 + 0 NA promoter-TSS (NM_001204402) promoter-TSS (NM_001204402) -50 NM_001204402 5631 Hs.56 NM_002764 ENSG00000147224 PRPS1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI phosphoribosyl pyrophosphate synthetase 1 protein-coding 27529 chr8 23163580 23163618 + 0 NA intron (NM_003840, intron 1 of 8) CpG 431 NM_003840 8793 Hs.213467 NM_003840 ENSG00000173530 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD TNF receptor superfamily member 10d protein-coding 3484 chr10 28291877 28292016 + 0 NA intron (NM_001318170, intron 1 of 16) Tigger3b|DNA|TcMar-Tigger -2596 NR_107053 102465880 NR_107053 ENSG00000275036 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 17807 chr20 25017442 25017489 + 0 NA intron (NM_032501, intron 7 of 13) intron (NM_032501, intron 7 of 13) 15241 NM_001252676 84532 Hs.529353 NM_032501 ENSG00000154930 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 26994 chr7 129853880 129853953 + 0 NA intron (NM_182697, intron 3 of 4) intron (NM_182697, intron 3 of 4) -78902 NR_029615 406959 NR_029615 ENSG00000207691 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 8550 chr13 105825184 105825338 + 0 NA Intergenic Intergenic 118431 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 1553 chr1 114670568 114670679 + 0 NA promoter-TSS (NM_001256404) promoter-TSS (NM_001256404) -512 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 15300 chr2 30756095 30756158 + 0 NA intron (NM_144575, intron 8 of 22) intron (NM_144575, intron 8 of 22) 51319 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 9113 chr14 59303350 59303454 + 0 NA intron (NM_014992, intron 2 of 24) intron (NM_014992, intron 2 of 24) 39961 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 2161 chr1 181033857 181033985 + 0 NA 5' UTR (NM_001194999, exon 2 of 7) 5' UTR (NM_001194999, exon 2 of 7) 496 NM_001194999 3140 Hs.13500 NM_001531 ENSG00000153029 MR1 HLALS major histocompatibility complex, class I-related protein-coding 16852 chr2 191847073 191847257 + 0 NA 5' UTR (NM_004657, exon 1 of 2) 5' UTR (NM_004657, exon 1 of 2) 115 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 SDPR CAVIN2|PS-p68|SDR|cavin-2 serum deprivation response protein-coding 22086 chr4 184282467 184282571 + 0 NA Intergenic LTR81|LTR|Gypsy -64558 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 23539 chr5 151264134 151264261 + 0 NA intron (NM_000405, intron 2 of 3) intron (NM_000405, intron 2 of 3) 11145 NM_000405 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 14998 chr2 10576073 10576177 + 0 NA intron (NR_048552, intron 19 of 19) L1MB7|LINE|L1 113862 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 25855 chr7 23299166 23299327 + 0 NA promoter-TSS (NM_138446) promoter-TSS (NM_138446) -75 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 19850 chr3 110577050 110577154 + 0 NA Intergenic Intergenic 492857 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 3494 chr10 29160136 29160314 + 0 NA Intergenic Intergenic -128836 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 20842 chr3 185342806 185342969 + 0 NA intron (NM_001242317, intron 2 of 12) MLT1E1A|LTR|ERVL-MaLR -20161 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 17239 chr2 229586929 229587033 + 0 NA intron (NM_139072, intron 3 of 12) intron (NM_139072, intron 3 of 12) 127589 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 7999 chr13 26186529 26186710 + 0 NA intron (NM_183045, intron 5 of 5) CpG 35138 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 20639 chr3 170993085 170993184 + 0 NA Intergenic L1PB4|LINE|L1 33845 NM_001278658 6514 Hs.167584 NM_000340 ENSG00000163581 SLC2A2 GLUT2 solute carrier family 2 member 2 protein-coding 25026 chr6 112043740 112043847 + 0 NA Intergenic Intergenic -10282 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 WISP3 CCN6|LIBC|PPAC|PPD|WISP-3 WNT1 inducible signaling pathway protein 3 protein-coding 7432 chr12 93090271 93090384 + 0 NA intron (NR_040096, intron 3 of 4) MIR3|SINE|MIR -84039 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LOC102724933 - uncharacterized LOC102724933 ncRNA 30608 chrX 37847499 37847628 + 0 NA promoter-TSS (NM_006520) promoter-TSS (NM_006520) 73 NM_006520 6990 Hs.446392 NM_006520 ENSG00000165169 DYNLT3 RP3|TCTE1L|TCTEX1L dynein light chain Tctex-type 3 protein-coding 22890 chr5 93349632 93349736 + 0 NA Intergenic Intergenic 221659 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 19577 chr3 57060532 57060566 + 0 NA 5' UTR (NM_181727, exon 1 of 2) 5' UTR (NM_181727, exon 1 of 2) 108 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 13621 chr18 55790353 55790457 + 0 NA Intergenic Intergenic 129794 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 22358 chr5 34656368 34656463 + 0 NA promoter-TSS (NM_001145520) promoter-TSS (NM_001145520) -76 NM_001145520 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 12813 chr17 62179656 62179760 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 95947 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 12225 chr17 21988653 21988802 + 0 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -214268 NR_144546 23666 Hs.499916 NR_144546 UBBP4 - ubiquitin B pseudogene 4 pseudo 25092 chr6 123118919 123119057 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 123017 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 2236 chr1 184982231 184982382 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -7720 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 FAM129A C1orf24|GIG39|NIBAN family with sequence similarity 129 member A protein-coding 11486 chr16 66927286 66927390 + 0 NA Intergenic Intergenic -1802 NM_001128850 6236 Hs.1027 NM_004165 ENSG00000166592 RRAD RAD|RAD1|REM3 RRAD, Ras related glycolysis inhibitor and calcium channel regulator protein-coding 9671 chr14 100306548 100306652 + 0 NA promoter-TSS (NM_001039355) promoter-TSS (NM_001039355) -53 NM_001291813 123096 Hs.578109 NM_152333 ENSG00000197119 SLC25A29 C14orf69|CACL|ORNT3 solute carrier family 25 member 29 protein-coding 1506 chr1 111214685 111214733 + 0 NA Intergenic MER61E|LTR|ERV1 -10171 NM_001271833 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 22017 chr4 173168611 173168715 + 0 NA promoter-TSS (NM_017423) promoter-TSS (NM_017423) -90 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 18822 chr22 32761526 32761630 + 0 NA intron (NM_001135774, intron 6 of 13) intron (NM_001135774, intron 6 of 13) -39238 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 7141 chr12 56636950 56636977 + 0 NA promoter-TSS (NM_013449) promoter-TSS (NM_013449) -584 NM_013449 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 26049 chr7 36037446 36037607 + 0 NA Intergenic Intergenic -57784 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 17924 chr20 35412013 35412154 + 0 NA promoter-TSS (NM_001184977) promoter-TSS (NM_001184977) 59 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 27121 chr7 140696926 140697056 + 0 NA promoter-TSS (NR_024454) promoter-TSS (NR_024454) 86 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 11715 chr16 81314835 81314897 + 0 NA promoter-TSS (NM_022041) promoter-TSS (NM_022041) -100 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 6522 chr12 6493927 6494071 + 0 NA promoter-TSS (NM_014865) promoter-TSS (NM_014865) -133 NM_014865 9918 Hs.5719 NM_014865 ENSG00000010292 NCAPD2 CAP-D2|CNAP1|hCAP-D2 non-SMC condensin I complex subunit D2 protein-coding 23620 chr5 159179083 159179271 + 0 NA intron (NM_001199380, intron 4 of 10) intron (NM_001199380, intron 4 of 10) 28471 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 12416 chr17 38449506 38449623 + 0 NA intron (NM_001199417, intron 1 of 23) intron (NM_001199417, intron 1 of 23) 21088 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 17461 chr20 2151893 2151997 + 0 NA Intergenic Intergenic 50063 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 4507 chr10 121159887 121159942 + 0 NA Intergenic Intergenic -308735 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 2890 chr1 228139955 228140095 + 0 NA promoter-TSS (NM_001159390) promoter-TSS (NM_001159390) -59 NM_001242839 2987 Hs.376933 NM_000858 ENSG00000143774 GUK1 GMK guanylate kinase 1 protein-coding 11960 chr17 4521441 4521564 + 0 NA intron (NM_001124758, intron 2 of 12) MIR|SINE|MIR 22659 NM_001124758 124976 Hs.22824 NM_001124758 ENSG00000183018 SPNS2 - sphingolipid transporter 2 protein-coding 19312 chr3 32391826 32391869 + 0 NA 5' UTR (NM_138410, exon 1 of 5) 5' UTR (NM_138410, exon 1 of 5) 176 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 9677 chr14 100693311 100693430 + 0 NA Intergenic Intergenic -33495 NM_003836 8788 Hs.116631 NM_003836 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta like non-canonical Notch ligand 1 protein-coding 17509 chr20 4686255 4686359 + 0 NA promoter-TSS (NM_001080123) promoter-TSS (NM_001080123) 156 NM_000311 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 135 chr1 9689492 9689595 + 0 NA intron (NM_005026, intron 1 of 23) CpG -1969 NR_126368 101929074 Hs.661762 NR_126366 ENSG00000231789 PIK3CD-AS2 - PIK3CD antisense RNA 2 ncRNA 17096 chr2 218217062 218217160 + 0 NA promoter-TSS (NM_152862) promoter-TSS (NM_152862) 17 NM_152862 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 9597 chr14 94320396 94320475 + 0 NA intron (NM_001756, intron 1 of 4) MER57C1|LTR|ERV1 2916 NM_001756 866 Hs.532635 NM_001756 ENSG00000170099 SERPINA6 CBG serpin family A member 6 protein-coding 16980 chr2 207012591 207012695 + 0 NA Intergenic LTR8|LTR|ERV1 73089 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 17310 chr2 234446591 234446665 + 0 NA Intergenic Intergenic 50421 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 16698 chr2 176002229 176002371 + 0 NA promoter-TSS (NM_030650) promoter-TSS (NM_030650) 45 NM_001305010 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|Ul|ulnaless lunapark, ER junction formation factor protein-coding 145 chr1 9943333 9943457 + 0 NA promoter-TSS (NM_001316975) promoter-TSS (NM_001316975) 32 NM_001316974 84328 Hs.327252 NM_032368 ENSG00000162441 LZIC - leucine zipper and CTNNBIP1 domain containing protein-coding 26596 chr7 92763724 92763844 + 0 NA intron (NM_001145306, intron 3 of 7) intron (NM_001145306, intron 3 of 7) 70133 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 21265 chr4 26289558 26289641 + 0 NA Intergenic L4_C_Mam|LINE|RTE-X -30111 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 10419 chr15 72473780 72473864 + 0 NA promoter-TSS (NM_005744) promoter-TSS (NM_005744) 417 NR_135678 105370888 Hs.540241 NR_135678 ENSG00000261423 LOC105370888 - uncharacterized LOC105370888 ncRNA 17304 chr2 233854713 233854792 + 0 NA promoter-TSS (NM_001282962) promoter-TSS (NM_001282962) -186 NM_001282962 55355 Hs.532968 NM_018410 ENSG00000123485 HJURP FAKTS|URLC9|hFLEG1 Holliday junction recognition protein protein-coding 22107 chr4 185209465 185209545 + 0 NA intron (NM_001317781, intron 1 of 18) CpG 5268 NM_001317781 83891 Hs.369091 NM_031953 ENSG00000109762 SNX25 MSTP043|SBBI31 sorting nexin 25 protein-coding 2674 chr1 214551860 214551964 + 0 NA promoter-TSS (NM_005401) promoter-TSS (NM_005401) -231 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 1131 chr1 75724635 75724755 + 0 NA 5' UTR (NM_000016, exon 1 of 12) 5' UTR (NM_000016, exon 1 of 12) 348 NM_001286042 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase, C-4 to C-12 straight chain protein-coding 8472 chr13 97433852 97433953 + 0 NA promoter-TSS (NM_021033) promoter-TSS (NM_021033) -319 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 1876 chr1 158124198 158124302 + 0 NA Intergenic Intergenic 16390 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 31040 chrX 123963141 123963264 + 0 NA intron (NM_001282418, intron 2 of 33) intron (NM_001282418, intron 2 of 33) 1496 NM_006603 10735 Hs.496710 NM_006603 ENSG00000101972 STAG2 SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 16323 chr2 130829087 130829196 + 0 NA Intergenic Intergenic 72850 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 30976 chrX 111681534 111681688 + 0 NA promoter-TSS (NM_001324294) promoter-TSS (NM_001324294) -46 NM_001324294 79868 Hs.443061 NM_018466 ENSG00000101901 ALG13 CDG1S|CXorf45|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W ALG13, UDP-N-acetylglucosaminyltransferase subunit protein-coding 8208 chr13 44918346 44918450 + 0 NA Intergenic Intergenic 71080 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 NUFIP1, FMR1 interacting protein 1 protein-coding 17473 chr20 2840629 2840793 + 0 NA promoter-TSS (NM_022760) promoter-TSS (NM_022760) -9 NM_022760 64773 Hs.29341 NM_022760 ENSG00000132635 PCED1A C20orf81|FAM113A|bA12M19.1 PC-esterase domain containing 1A protein-coding 15848 chr2 75394849 75395003 + 0 NA Intergenic HERVL-int|LTR|ERVL -129142 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 4605 chr10 128126587 128126691 + 0 NA promoter-TSS (NM_002417) promoter-TSS (NM_002417) -435 NM_001145966 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 26095 chr7 39623413 39623563 + 0 NA promoter-TSS (NM_005402) promoter-TSS (NM_005402) -65 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 13645 chr18 58270043 58270156 + 0 NA intron (NM_001144964, intron 5 of 30) intron (NM_001144964, intron 5 of 30) 48577 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 25760 chr7 17444813 17444917 + 0 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 69948 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 13712 chr18 63587118 63587249 + 0 NA promoter-TSS (NM_001307923) promoter-TSS (NM_001307923) -117 NM_001307923 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 17147 chr2 221530247 221530387 + 0 NA intron (NM_001304536, intron 4 of 18) intron (NM_001304536, intron 4 of 18) 42041 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 23154 chr5 127650786 127650890 + 0 NA intron (NM_001048252, intron 1 of 2) intron (NM_001048252, intron 1 of 2) 1817 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 11777 chr16 84819933 84820037 + 0 NA promoter-TSS (NM_031476) promoter-TSS (NM_031476) 4 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 23929 chr6 4599981 4600105 + 0 NA Intergenic L1MB3|LINE|L1 -10522 NR_122107 497048 Hs.591355 NM_001011540 KU-MEL-3 - uncharacterized LOC497048 ncRNA 6919 chr12 45727563 45727698 + 0 NA non-coding (NR_028408, exon 1 of 1) non-coding (NR_028408, exon 1 of 1) 291 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 23920 chr6 4018673 4018820 + 0 NA Intergenic CpG -2589 NM_003913 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 11129 chr16 23072063 23072188 + 0 NA exon (NM_020718, exon 15 of 16) exon (NM_020718, exon 15 of 16) 77145 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 6456 chr12 3076915 3076988 + 0 NA promoter-TSS (NM_001168320) promoter-TSS (NM_001168320) -404 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 509 chr1 30756840 30756966 + 0 NA intron (NM_006762, intron 1 of 7) intron (NM_006762, intron 1 of 7) 933 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 21830 chr4 139645569 139645722 + 0 NA Intergenic L1MB4|LINE|L1 -20123 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 19173 chr3 12706561 12706665 + 0 NA Intergenic LTR16|LTR|ERVL -42412 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 3708 chr10 57864982 57865116 + 0 NA Intergenic Intergenic 402885 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 1015 chr1 63920479 63920641 + 0 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 146541 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 7450 chr12 94553351 94553455 + 0 NA Intergenic Intergenic -8386 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 976 chr1 61077037 61077117 + 0 NA promoter-TSS (NM_001145511) promoter-TSS (NM_001145511) -197 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 11041 chr16 14071050 14071277 + 0 NA promoter-TSS (NM_014048) promoter-TSS (NM_014048) -150 NM_014048 57496 Hs.49143 NM_014048 ENSG00000186260 MKL2 MRTF-B|MRTFB|NPD001 MKL1/myocardin like 2 protein-coding 20935 chr3 190155778 190155975 + 0 NA Intergenic Intergenic -33439 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 28610 chr8 126433899 126434003 + 0 NA Intergenic LTR8B|LTR|ERV1 108456 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 18415 chr21 8213269 8213414 + 0 NA promoter-TSS (NR_003287) promoter-TSS (NR_003287) -547 NR_003287 100008589 NR_003287 RNA28S5 RN28S1 RNA, 28S ribosomal 5 rRNA 12248 chr17 27631027 27631176 + 0 NA promoter-TSS (NM_002308) promoter-TSS (NM_002308) -47 NR_024043 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 8147 chr13 40406934 40406959 + 0 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 74060 NR_024505 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 - long intergenic non-protein coding RNA 598 ncRNA 21967 chr4 163166856 163166989 + 0 NA promoter-TSS (NM_001128931) promoter-TSS (NM_001128931) -1 NM_001128931 92345 Hs.129095 NM_138386 ENSG00000145414 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 6910 chr12 45215924 45216004 + 0 NA promoter-TSS (NM_001025356) promoter-TSS (NM_001025356) -23 NM_001204803 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 6174 chr11 118930271 118930424 + 0 NA Intergenic Intergenic -19443 NM_182557 283149 Hs.414740 NM_182557 ENSG00000186174 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 27359 chr8 8917666 8917770 + 0 NA Intergenic Intergenic -24097 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1 malignant fibrous histiocytoma amplified sequence 1 protein-coding 21567 chr4 88523696 88523829 + 0 NA promoter-TSS (NM_032906) promoter-TSS (NM_032906) 39 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 11415 chr16 57186142 57186187 + 0 NA promoter-TSS (NM_024946) promoter-TSS (NM_024946) -100 NM_024946 80011 Hs.396740 NM_024946 ENSG00000172775 FAM192A C16orf94|CDA018|CDA10|NIP30 family with sequence similarity 192 member A protein-coding 2265 chr1 192439543 192439647 + 0 NA Intergenic LTR88b|LTR|Gypsy? 122603 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G-protein signaling 21 protein-coding 13398 chr18 31498064 31498234 + 0 NA 5' UTR (NM_001943, exon 1 of 15) 5' UTR (NM_001943, exon 1 of 15) 145 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 11735 chr16 81908632 81908796 + 0 NA intron (NM_002661, intron 17 of 32) intron (NM_002661, intron 17 of 32) 102774 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 28147 chr8 86703489 86703641 + 0 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 40110 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 21538 chr4 84966630 84966767 + 0 NA promoter-TSS (NR_015359) promoter-TSS (NR_015359) -120 NR_015359 404201 Hs.720920 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 16380 chr2 137659657 137659761 + 0 NA exon (NM_001316349, exon 25 of 28) exon (NM_001316349, exon 25 of 28) 268223 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 8601 chr13 110094733 110094864 + 0 NA Intergenic Intergenic 41513 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 11505 chr16 67660221 67660358 + 0 NA promoter-TSS (NM_001037281) promoter-TSS (NM_001037281) 526 NM_001082487 65057 Hs.78019 NM_022914 ENSG00000102977 ACD PIP1|PTOP|TINT1|TPP1 ACD, shelterin complex subunit and telomerase recruitment factor protein-coding 3597 chr10 41859854 41860008 + 0 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 508114 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 23854 chr6 292129 292253 + 0 NA non-coding (NR_104473, exon 1 of 6) non-coding (NR_104473, exon 1 of 6) 134 NM_001286555 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 9378 chr14 74888335 74888503 + 0 NA intron (NR_033814, intron 3 of 13) intron (NR_033814, intron 3 of 13) 6528 NM_001244883 1743 Hs.525459 NM_001933 ENSG00000119689 DLST DLTS dihydrolipoamide S-succinyltransferase protein-coding 12601 chr17 47323856 47323967 + 0 NA promoter-TSS (NR_110881) promoter-TSS (NR_110881) -10 NR_110880 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 11428 chr16 57591246 57591350 + 0 NA Intergenic Intergenic -28395 NM_001290143 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 30072 chr9 122940788 122940917 + 0 NA promoter-TSS (NM_012197) promoter-TSS (NM_012197) -157 NM_012197 23637 Hs.271341 NM_012197 ENSG00000011454 RABGAP1 GAPCENA|TBC1D11 RAB GTPase activating protein 1 protein-coding 28579 chr8 124474607 124474784 + 0 NA promoter-TSS (NM_007218) promoter-TSS (NM_007218) -72 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 18886 chr22 38135446 38135627 + 0 NA intron (NM_001199562, intron 5 of 15) intron (NM_001199562, intron 5 of 15) -24867 NM_025045 80115 Hs.474822 NM_025045 ENSG00000128298 BAIAP2L2 - BAI1 associated protein 2 like 2 protein-coding 29143 chr9 69645742 69645846 + 0 NA intron (NM_001163, intron 1 of 12) MLT1N2|LTR|ERVL-MaLR 26565 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 13355 chr18 26580062 26580207 + 0 NA intron (NM_001258222, intron 1 of 4) L2a|LINE|L2 11401 NR_107024 102466874 NR_107024 ENSG00000276221 MIR8057 hsa-mir-8057 microRNA 8057 ncRNA 23381 chr5 141866273 141866399 + 0 NA promoter-TSS (NM_001278615) promoter-TSS (NM_001278615) -134 NM_001278615 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 22781 chr5 79991195 79991325 + 0 NA promoter-TSS (NM_001010891) promoter-TSS (NM_001010891) 5 NM_001167741 345778 Hs.531418 NM_001010891 ENSG00000177034 MTX3 - metaxin 3 protein-coding 18076 chr20 44909937 44910056 + 0 NA promoter-TSS (NR_134983) promoter-TSS (NR_134983) -64 NR_134983 80336 Hs.641481 NM_001124756 ENSG00000101104 PABPC1L C20orf119|EPAB|PABPC1L1|dJ1069P2.3 poly(A) binding protein cytoplasmic 1 like protein-coding 20666 chr3 172546148 172546252 + 0 NA Intergenic Intergenic -22693 NM_001190942 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 17144 chr2 221125848 221125952 + 0 NA Intergenic Intergenic 446458 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 16165 chr2 113069232 113069245 + 0 NA intron (NM_173161, intron 1 of 4) intron (NM_173161, intron 1 of 4) 1268 NM_173161 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 (theta) protein-coding 6328 chr11 128908706 128908810 + 0 NA intron (NM_000890, intron 1 of 2) intron (NM_000890, intron 1 of 2) -2527 NR_045767 219833 Hs.689860 NM_145013 ENSG00000174370 C11orf45 - chromosome 11 open reading frame 45 protein-coding 15434 chr2 43114371 43114400 + 0 NA Intergenic MIRc|SINE|MIR -74842 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 25794 chr7 19970229 19970349 + 0 NA intron (NR_110114, intron 3 of 5) L2a|LINE|L2 170137 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 2931 chr1 230681726 230681896 + 0 NA intron (NM_007357, intron 10 of 17) intron (NM_007357, intron 10 of 17) 32779 NM_000029 183 Hs.19383 NM_000029 ENSG00000135744 AGT ANHU|SERPINA8 angiotensinogen protein-coding 12998 chr17 75182531 75182664 + 0 NA intron (NM_001005849, intron 1 of 2) CpG 406 NM_001005849 6613 Hs.380973 NM_006937 ENSG00000188612 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin-like modifier 2 protein-coding 862 chr1 51518777 51518887 + 0 NA intron (NM_001981, intron 1 of 24) CpG 491 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 27046 chr7 134459198 134459302 + 0 NA promoter-TSS (NM_001346142) promoter-TSS (NM_001346142) -11 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 15563 chr2 54728896 54728916 + 0 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 3894 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - echinoderm microtubule associated protein like 6 protein-coding 18372 chr20 61436859 61436987 + 0 NA intron (NM_001794, intron 2 of 15) MER21C|LTR|ERVL -62498 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 13932 chr19 3572709 3572831 + 0 NA promoter-TSS (NM_006339) promoter-TSS (NM_006339) -175 NM_006339 10362 Hs.406534 NM_006339 ENSG00000064961 HMG20B BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857 high mobility group 20B protein-coding 6232 chr11 122146527 122146631 + 0 NA promoter-TSS (NR_029477) promoter-TSS (NR_029477) 14 NR_029477 406882 NR_029477 ENSG00000198975 MIRLET7A2 LET7A2|MIRNLET7A2|let-7a-2 microRNA let-7a-2 ncRNA 30632 chrX 41381784 41381964 + 0 NA Intergenic Intergenic 47712 NR_126094 1654 Hs.728563 NM_001356 ENSG00000215301 DDX3X CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102 DEAD-box helicase 3, X-linked protein-coding 19707 chr3 94929095 94929199 + 0 NA Intergenic Intergenic -9116 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 13809 chr18 77114779 77114862 + 0 NA intron (NM_001025100, intron 1 of 3) intron (NM_001025100, intron 1 of 3) 17998 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 2287 chr1 195097483 195097587 + 0 NA Intergenic MER52D|LTR|ERV1 1484946 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 15962 chr2 95402602 95402747 + 0 NA promoter-TSS (NM_016044) promoter-TSS (NM_016044) -26 NM_016044 51011 Hs.531247 NM_016044 ENSG00000115042 FAHD2A CGI-105 fumarylacetoacetate hydrolase domain containing 2A protein-coding 12891 chr17 67825427 67825569 + 0 NA promoter-TSS (NM_182641) promoter-TSS (NM_182641) -166 NM_004459 2186 Hs.444200 NM_004459 ENSG00000171634 BPTF FAC1|FALZ|NURF301 bromodomain PHD finger transcription factor protein-coding 10521 chr15 79680848 79680952 + 0 NA Intergenic Charlie2a|DNA|hAT-Charlie 216097 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268 methenyltetrahydrofolate synthetase protein-coding 9018 chr14 53217482 53217672 + 0 NA Intergenic LTR12C|LTR|ERV1 64223 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 12050 chr17 7615155 7615282 + 0 NA promoter-TSS (NM_004860) promoter-TSS (NM_004860) -321 NM_004860 9513 Hs.52788 NM_004860 ENSG00000129245 FXR2 FMR1L2|FXR2P FMR1 autosomal homolog 2 protein-coding 8134 chr13 39037916 39038040 + 0 NA promoter-TSS (NM_025138) promoter-TSS (NM_025138) 98 NM_025138 80209 Hs.318526 NM_025138 ENSG00000120685 PROSER1 C13orf23 proline and serine rich 1 protein-coding 12636 chr17 49192024 49192128 + 0 NA Intergenic CpG 17305 NM_031498 2793 Hs.181781 NM_031498 ENSG00000167083 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 G protein subunit gamma transducin 2 protein-coding 10400 chr15 71559164 71559316 + 0 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 12038 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 25906 chr7 26291789 26291866 + 0 NA promoter-TSS (NM_001318198) promoter-TSS (NM_001318198) -68 NM_001199835 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 15324 chr2 32357097 32357202 + 0 NA 5' UTR (NM_016252, exon 1 of 74) 5' UTR (NM_016252, exon 1 of 74) 121 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 5850 chr11 93055074 93055151 + 0 NA Intergenic Intergenic 85489 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 7902 chr12 131929120 131929198 + 0 NA promoter-TSS (NM_001002020) promoter-TSS (NM_001002020) -41 NM_001002020 80324 Hs.592004 NM_025215 ENSG00000177192 PUS1 MLASA1 pseudouridylate synthase 1 protein-coding 7198 chr12 62466683 62466787 + 0 NA promoter-TSS (NM_001278469) promoter-TSS (NM_001278469) -82 NM_001278471 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 15859 chr2 75828883 75828987 + 0 NA Intergenic L2c|LINE|L2 -117950 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 6975 chr12 49623332 49623408 + 0 NA promoter-TSS (NM_001031698) promoter-TSS (NM_001031698) -44 NM_001031698 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 23978 chr6 7641127 7641231 + 0 NA Intergenic MER70B|LTR|ERVL 50980 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 19717 chr3 97872285 97872389 + 0 NA exon (NM_153605, exon 4 of 22) exon (NM_153605, exon 4 of 22) 50297 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 10132 chr15 55168443 55168547 + 0 NA Intergenic Intergenic 28538 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 17852 chr20 31719442 31719474 + 0 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -2049 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 9344 chr14 73241537 73241684 + 0 NA intron (NM_173462, intron 2 of 25) intron (NM_173462, intron 2 of 25) 4113 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN - papilin, proteoglycan like sulfated glycoprotein protein-coding 4824 chr11 10899575 10899725 + 0 NA Intergenic Intergenic 41433 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 20910 chr3 189324877 189325017 + 0 NA Intergenic Intergenic -84353 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 20306 chr3 142225465 142225629 + 0 NA promoter-TSS (NM_001039547) promoter-TSS (NM_001039547) 60 NR_033289 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 (putative) protein-coding 15632 chr2 61854017 61854054 + 0 NA exon (NM_001201543, exon 1 of 7) exon (NM_001201543, exon 1 of 7) 108 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161 member A protein-coding 11501 chr16 67481270 67481286 + 0 NA promoter-TSS (NM_004691) promoter-TSS (NM_004691) -92 NM_004691 9114 Hs.106876 NM_004691 ENSG00000159720 ATP6V0D1 ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD ATPase H+ transporting V0 subunit d1 protein-coding 14205 chr19 15702102 15702218 + 0 NA Intergenic Intergenic -25864 NM_013939 26538 Hs.247694 NM_013939 ENSG00000171942 OR10H2 - olfactory receptor family 10 subfamily H member 2 protein-coding 19038 chr22 46935056 46935160 + 0 NA intron (NR_104292, intron 10 of 13) intron (NR_104292, intron 10 of 13) -19066 NR_122047 642757 Hs.632786 NR_122047 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 8672 chr14 20971481 20971631 + 0 NA Intergenic CpG 16085 NM_002934 6036 Hs.728 NM_002934 ENSG00000169385 RNASE2 EDN|RAF3|RNS2 ribonuclease A family member 2 protein-coding 30212 chr9 128947543 128947663 + 0 NA promoter-TSS (NM_015354) promoter-TSS (NM_015354) -90 NM_015354 23511 Hs.308340 NM_015354 ENSG00000095319 NUP188 KIAA0169|hNup188 nucleoporin 188 protein-coding 29851 chr9 110293401 110293505 + 0 NA Intergenic L2a|LINE|L2 -36813 NM_001244938 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 7485 chr12 97922421 97922525 + 0 NA Intergenic Intergenic 16648 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 10351 chr15 68795414 68795518 + 0 NA intron (NM_006305, intron 1 of 6) intron (NM_006305, intron 1 of 6) 6459 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 9404 chr14 76151806 76152001 + 0 NA promoter-TSS (NM_001322031) promoter-TSS (NM_001322031) 18 NM_001322031 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 29342 chr9 79571641 79571818 + 0 NA promoter-TSS (NM_001282748) promoter-TSS (NM_001282748) -44 NM_001282749 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 29124 chr9 68584494 68584659 + 0 NA Intergenic Intergenic -37974 NR_109769 101927015 Hs.406454 NR_109769 ENSG00000234506 LINC01506 - long intergenic non-protein coding RNA 1506 ncRNA 18315 chr20 57622672 57622776 + 0 NA Intergenic Intergenic -2148 NM_001160418 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 21253 chr4 24598207 24598394 + 0 NA Intergenic Intergenic -13739 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 23263 chr5 135127384 135127488 + 0 NA intron (NM_001277348, intron 2 of 5) MIRb|SINE|MIR -87389 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 CTC-276P9.1|Epist C5orf66 antisense RNA 1 ncRNA 26204 chr7 46383696 46383800 + 0 NA Intergenic Intergenic 313374 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 27675 chr8 35487126 35487280 + 0 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -57189 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 16891 chr2 199229280 199229384 + 0 NA Intergenic HERVL18-int|LTR|ERVL 228764 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 254 chr1 17250697 17250892 + 0 NA intron (NM_016233, intron 1 of 15) intron (NM_016233, intron 1 of 15) 1696 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3 peptidyl arginine deiminase 3 protein-coding 28008 chr8 71258251 71258379 + 0 NA intron (NM_172060, intron 9 of 15) intron (NM_172060, intron 9 of 15) 98196 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 19482 chr3 48847828 48847938 + 0 NA promoter-TSS (NM_001321983) promoter-TSS (NM_001321983) -33 NM_001321982 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 1321 chr1 93755504 93755618 + 0 NA intron (NM_001261408, intron 2 of 13) Tigger3b|DNA|TcMar-Tigger -73723 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 31090 chrX 135098813 135098927 + 0 NA promoter-TSS (NR_024493) promoter-TSS (NR_024493) -236 NR_024493 644596 Hs.656427 NR_024493 ENSG00000196972 SMIM10L2B LINC00087|NCRNA00087 small integral membrane protein 10 like 2B ncRNA 11313 chr16 48964305 48964423 + 0 NA Intergenic L2b|LINE|L2 317467 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 12085 chr17 8435847 8435965 + 0 NA promoter-TSS (NM_001025579) promoter-TSS (NM_001025579) 54 NM_030808 81565 Hs.372123 NM_030808 ENSG00000166579 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1 like 1 protein-coding 4214 chr10 100286115 100286219 + 0 NA exon (NM_001282439, exon 2 of 5) exon (NM_001282439, exon 2 of 5) 197 NM_001001342 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 3945 chr10 77539373 77539429 + 0 NA intron (NM_001322832, intron 1 of 27) intron (NM_001322832, intron 1 of 27) 98418 NM_001322837 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 28313 chr8 100900549 100900672 + 0 NA Intergenic Intergenic 49961 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 21742 chr4 119209259 119209360 + 0 NA intron (NR_125931, intron 1 of 2) intron (NR_125931, intron 1 of 2) -3318 NM_019050 54532 Hs.431081 NM_019050 ENSG00000145390 USP53 - ubiquitin specific peptidase 53 protein-coding 31184 chrX 154428600 154428637 + 0 NA promoter-TSS (NM_001183) promoter-TSS (NM_001183) -14 NM_001183 537 Hs.6551 NM_001183 ENSG00000071553 ATP6AP1 16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3 ATPase H+ transporting accessory protein 1 protein-coding 6615 chr12 12562808 12562843 + 0 NA promoter-TSS (NM_030640) promoter-TSS (NM_030640) -311 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 14448 chr19 40285503 40285627 + 0 NA promoter-TSS (NM_001243028) promoter-TSS (NM_001243028) -170 NM_001243027 208 Hs.631535 NM_001626 ENSG00000105221 AKT2 HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA AKT serine/threonine kinase 2 protein-coding 6496 chr12 6195787 6195869 + 0 NA Intergenic Intergenic -3879 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 851 chr1 48093855 48094039 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 88481 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 21359 chr4 52312831 52312977 + 0 NA Intergenic LTR78|LTR|ERV1 261573 NM_001297608 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 2296 chr1 196481770 196481834 + 0 NA intron (NM_198503, intron 4 of 27) intron (NM_198503, intron 4 of 27) 100679 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 12150 chr17 17001979 17002083 + 0 NA Intergenic Intergenic -29943 NM_012452 23495 Hs.158341 NM_012452 ENSG00000240505 TNFRSF13B CD267|CVID|CVID2|IGAD2|RYZN|TACI|TNFRSF14B TNF receptor superfamily member 13B protein-coding 13904 chr19 2627666 2627748 + 0 NA intron (NM_052847, intron 2 of 4) intron (NM_052847, intron 2 of 4) -3008 NR_107004 102465838 NR_107004 ENSG00000277904 MIR7850 hsa-mir-7850 microRNA 7850 ncRNA 24371 chr6 31703313 31703463 + 0 NA promoter-TSS (NR_033489).2 promoter-TSS (NR_033489).2 -28 NR_033489 7920 Hs.388188 NM_021160 ENSG00000204427 ABHD16A BAT5|D6S82E|NG26|PP199 abhydrolase domain containing 16A protein-coding 9975 chr15 42581540 42581623 + 0 NA intron (NM_020759, intron 1 of 32) CpG 5922 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 94 chr1 6743951 6744055 + 0 NA Intergenic Intergenic 16476 NR_104621 100505887 Hs.250839 NR_104620 LINC01672 - long intergenic non-protein coding RNA 1672 ncRNA 10000 chr15 43824706 43824810 + 0 NA promoter-TSS (NM_005926) promoter-TSS (NM_005926) -5 NM_005926 4236 Hs.61418 NM_005926 ENSG00000140259 MFAP1 - microfibrillar associated protein 1 protein-coding 19890 chr3 112641129 112641233 + 0 NA promoter-TSS (NM_199511) promoter-TSS (NM_199511) -38 NM_199511 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 2668 chr1 214446898 214446953 + 0 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 104756 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 18237 chr20 52943399 52943427 + 0 NA Intergenic Intergenic -28994 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 27962 chr8 66021004 66021095 + 0 NA promoter-TSS (NM_033105) promoter-TSS (NM_033105) -507 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 24750 chr6 57317477 57317670 + 0 NA promoter-TSS (NM_000947) promoter-TSS (NM_000947) -44 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 primase (DNA) subunit 2 protein-coding 6474 chr12 4538709 4538861 + 0 NA promoter-TSS (NM_001346155) promoter-TSS (NM_001346155) 1 NM_001130862 10635 Hs.730696 NM_006479 ENSG00000111247 RAD51AP1 PIR51 RAD51 associated protein 1 protein-coding 4334 chr10 110151645 110151776 + 0 NA Intergenic Intergenic -55895 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 23081 chr5 119268620 119268804 + 0 NA promoter-TSS (NM_001077654) promoter-TSS (NM_001077654) 20 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 16913 chr2 200787505 200787628 + 0 NA intron (NR_135012, intron 29 of 30) intron (NR_135012, intron 29 of 30) -23980 NM_014670 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 8945 chr14 49505438 49505614 + 0 NA Intergenic Intergenic 80890 NM_001032 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 23321 chr5 139404067 139404221 + 0 NA promoter-TSS (NM_194296) promoter-TSS (NM_194296) -57 NM_194296 202051 Hs.373612 NM_194296 ENSG00000170469 SPATA24 CCDC161|T6441 spermatogenesis associated 24 protein-coding 20508 chr3 157785162 157785312 + 0 NA Intergenic Intergenic 241893 NM_001130002 152078 Hs.259046 NM_001099777 ENSG00000174899 PQLC2L C3orf55 PQ loop repeat containing 2 like protein-coding 10007 chr15 44427536 44427568 + 0 NA 5' UTR (NM_016396, exon 1 of 13) 5' UTR (NM_016396, exon 1 of 13) 171 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 25885 chr7 25028791 25028895 + 0 NA Intergenic Intergenic -48631 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 24957 chr6 104859852 104859993 + 0 NA promoter-TSS (NM_001321080) promoter-TSS (NM_001321080) -3 NM_020771 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 22772 chr5 78699686 78699705 + 0 NA Intergenic Intergenic -50870 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 200 chr1 14924077 14924181 + 0 NA promoter-TSS (NM_001018000) promoter-TSS (NM_001018000) 0 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 29874 chr9 111805875 111805979 + 0 NA Intergenic MIRb|SINE|MIR -10919 NR_109816 158401 Hs.428209 NM_173521 ENSG00000165181 C9orf84 - chromosome 9 open reading frame 84 protein-coding 9537 chr14 90331660 90331751 + 0 NA intron (NM_017970, intron 1 of 13) intron (NM_017970, intron 1 of 13) 432 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 24197 chr6 24721268 24721417 + 0 NA Intergenic CpG -2167 NM_030939 81688 Hs.744857 NM_030939 ENSG00000112308 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 16501 chr2 156909002 156909106 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -348544 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 29353 chr9 81028656 81028776 + 0 NA Intergenic Intergenic 660819 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 8387 chr13 77026628 77026732 + 0 NA intron (NM_012158, intron 1 of 4) CpG 516 NM_012158 26224 Hs.508284 NM_012158 ENSG00000005812 FBXL3 FBL3|FBL3A|FBXL3A F-box and leucine rich repeat protein 3 protein-coding 18684 chr22 23182704 23182863 + 0 NA intron (NM_021574, intron 1 of 21) intron (NM_021574, intron 1 of 21) 2418 NM_004327 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR, RhoGEF and GTPase activating protein protein-coding 21941 chr4 156999285 156999437 + 0 NA Intergenic Intergenic -27967 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 11510 chr16 67841946 67842063 + 0 NA promoter-TSS (NM_020457) promoter-TSS (NM_020457) -306 NM_020457 57215 Hs.632200 NM_020457 ENSG00000168286 THAP11 CTG-B43a|CTG-B45d|HRIHFB2206|RONIN THAP domain containing 11 protein-coding 30227 chr9 129362363 129362514 + 0 NA Intergenic Intergenic 25515 NR_120686 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 9236 chr14 66379226 66379385 + 0 NA Intergenic Intergenic -107066 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 LINC00238 C14orf53|NCRNA00238 long intergenic non-protein coding RNA 238 ncRNA 5945 chr11 100681200 100681243 + 0 NA Intergenic Intergenic -6455 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 5145 chr11 34681340 34681468 + 0 NA Intergenic Intergenic 48940 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 30138 chr9 127361594 127361719 + 0 NA intron (NR_104591, intron 21 of 26) intron (NR_104591, intron 21 of 26) -35482 NM_001271712 29988 Hs.179522 NM_014580 ENSG00000136856 SLC2A8 GLUT8|GLUTX1 solute carrier family 2 member 8 protein-coding 29019 chr9 28927775 28927879 + 0 NA intron (NM_001258282, intron 2 of 6) MIR|SINE|MIR -38872 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 25633 chr7 6483202 6483206 + 0 NA intron (NM_006854, intron 1 of 4) intron (NM_006854, intron 1 of 4) 1014 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 20033 chr3 122573104 122573222 + 0 NA 3' UTR (NM_138287, exon 5 of 5) 3' UTR (NM_138287, exon 5 of 5) -4439 NM_001113523 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 19194 chr3 14199762 14199917 + 0 NA Intergenic Intergenic 21111 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 25335 chr6 150492573 150492667 + 0 NA Intergenic Intergenic -107245 NR_138136 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 16077 chr2 105859337 105859510 + 0 NA intron (NM_001004722, intron 3 of 3) intron (NM_001004722, intron 3 of 3) 7675 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 21775 chr4 125096704 125096857 + 0 NA Intergenic Intergenic -219632 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 10752 chr15 94120140 94120186 + 0 NA Intergenic Intergenic -12225 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 4464 chr10 119080119 119080266 + 0 NA intron (NM_003750, intron 1 of 21) CpG 630 NM_003750 8661 Hs.523299 NM_003750 ENSG00000107581 EIF3A EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185 eukaryotic translation initiation factor 3 subunit A protein-coding 16513 chr2 157900386 157900476 + 0 NA Intergenic MLT1O|LTR|ERVL-MaLR -24569 NM_001347664 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 24245 chr6 26659732 26659837 + 0 NA promoter-TSS (NM_001242797) promoter-TSS (NM_001242797) -32 NM_001242799 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 19823 chr3 107699823 107699927 + 0 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 176939 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX, HMG-box containing protein-coding 11140 chr16 23510432 23510536 + 0 NA promoter-TSS (NM_015044) promoter-TSS (NM_015044) 10 NM_015044 23062 Hs.460336 NM_015044 ENSG00000103365 GGA2 VEAR golgi associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding 20376 chr3 149582100 149582204 + 0 NA intron (NM_001168278, intron 3 of 7) intron (NM_001168278, intron 3 of 7) 75873 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 18920 chr22 39399722 39399827 + 0 NA promoter-TSS (NM_006116) promoter-TSS (NM_006116) 20 NM_006116 10454 Hs.507681 NM_006116 ENSG00000100324 TAB1 3'-Tab1|MAP3K7IP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 protein-coding 31171 chrX 153708566 153708729 + 0 NA intron (NM_001139457, intron 4 of 7) intron (NM_001139457, intron 4 of 7) 15454 NM_001139457 10134 Hs.522817 NM_005745 ENSG00000185825 BCAP31 6C6-AG|BAP31|CDM|DDCH|DXS1357E B-cell receptor-associated protein 31 protein-coding 18262 chr20 53915962 53916104 + 0 NA Intergenic Intergenic -40324 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 17066 chr2 215311933 215312037 + 0 NA promoter-TSS (NM_004044) promoter-TSS (NM_004044) 29 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 7526 chr12 101022103 101022207 + 0 NA intron (NM_001286616, intron 8 of 26) L3|LINE|CR1 120509 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 7476 chr12 96889671 96889775 + 0 NA Intergenic Intergenic -17500 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 13790 chr18 75409008 75409112 + 0 NA TTS (NM_001037331) TTS (NM_001037331) 18643 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 10087 chr15 51004411 51004460 + 0 NA 3' UTR (NM_001252127, exon 21 of 21) 3' UTR (NM_001252127, exon 21 of 21) 60306 NR_027642 100132724 Hs.730493 NR_027642 DCAF13P3 - DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo 2764 chr1 221958278 221958432 + 0 NA Intergenic LTR7C|LTR|ERV1 -117689 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 23894 chr6 3023883 3024037 + 0 NA promoter-TSS (NR_132750) promoter-TSS (NR_132750) 811 NR_033884 401233 Hs.441039 NM_001013680 HTATSF1P2 - HIV-1 Tat specific factor 1 pseudogene 2 pseudo 23344 chr5 140303040 140303144 + 0 NA promoter-TSS (NM_002622) promoter-TSS (NM_002622) 12 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 5177 chr11 36455887 36456090 + 0 NA intron (NM_001160168, intron 5 of 5) intron (NM_001160168, intron 5 of 5) 54325 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 1556 chr1 114758028 114758202 + 0 NA promoter-TSS (NM_007158) promoter-TSS (NM_007158) -65 NM_001007553 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 30251 chr9 130016850 130016925 + 0 NA intron (NM_015033, intron 1 of 16) L2a|LINE|L2 26307 NM_015033 23048 Hs.189409 NM_015033 ENSG00000187239 FNBP1 FBP17 formin binding protein 1 protein-coding 18033 chr20 41329642 41329746 + 0 NA Intergenic Intergenic -11159 NR_126051 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 8750 chr14 24141550 24141765 + 0 NA promoter-TSS (NM_016049) promoter-TSS (NM_016049) -69 NM_001346877 51016 Hs.271614 NM_016049 ENSG00000100908 EMC9 C14orf122|CGI-112|FAM158A ER membrane protein complex subunit 9 protein-coding 15850 chr2 75573673 75573777 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR -4003 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 19341 chr3 36813438 36813559 + 0 NA Intergenic Intergenic -73637 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 11811 chr16 87383697 87383801 + 0 NA promoter-TSS (NM_024735) promoter-TSS (NM_024735) 44 NM_024735 79791 Hs.567582 NM_024735 ENSG00000103264 FBXO31 FBX14|FBXO14|Fbx31|MRT45|pp2386 F-box protein 31 protein-coding 4800 chr11 9600698 9600797 + 0 NA Intergenic L2c|LINE|L2 26060 NM_001143976 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 24595 chr6 43496618 43496772 + 0 NA intron (NM_001146017, intron 1 of 9) intron (NM_001146017, intron 1 of 9) 7111 NM_001146017 93643 Hs.520145 NM_080604 ENSG00000137221 TJAP1 PILT|TJP4 tight junction associated protein 1 protein-coding 21102 chr4 932392 932392 + 0 NA promoter-TSS (NM_005255) promoter-TSS (NM_005255) -2 NM_001318134 2580 Hs.369607 NM_005255 ENSG00000178950 GAK DNAJ26|DNAJC26 cyclin G associated kinase protein-coding 4593 chr10 126902327 126902431 + 0 NA Intergenic Intergenic -3030 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 24486 chr6 37134745 37134837 + 0 NA Intergenic Intergenic -35355 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 18134 chr20 47479747 47479851 + 0 NA Intergenic Intergenic -22058 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 14725 chr19 50725017 50725047 + 0 NA exon (NM_002975, exon 4 of 4) exon (NM_002975, exon 4 of 4) 1684 NM_002975 6320 Hs.512680 NM_002975 ENSG00000105472 CLEC11A CLECSF3|LSLCL|P47|SCGF C-type lectin domain family 11 member A protein-coding 14352 chr19 33298674 33298778 + 0 NA Intergenic Intergenic 3838 NM_001287424 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT/enhancer binding protein alpha protein-coding 17041 chr2 212451889 212451993 + 0 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) -25581 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 15735 chr2 69160140 69160244 + 0 NA intron (NM_032208, intron 13 of 17) intron (NM_032208, intron 13 of 17) 56510 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 7320 chr12 79897754 79897858 + 0 NA intron (NM_001244990, intron 2 of 24) intron (NM_001244990, intron 2 of 24) 16105 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 31216 chrY 11643640 11643793 + 0 NA Intergenic Intergenic 777874 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 5049 chr11 27472793 27472952 + 0 NA promoter-TSS (NM_001346432) promoter-TSS (NM_001346432) -97 NM_001346432 55366 Hs.502176 NM_018490 ENSG00000205213 LGR4 BNMD17|GPR48 leucine rich repeat containing G protein-coupled receptor 4 protein-coding 1766 chr1 153572632 153572785 + 0 NA Intergenic MIRb|SINE|MIR -6878 NM_005978 6273 Hs.516484 NM_005978 ENSG00000196754 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 21667 chr4 105708646 105708750 + 0 NA promoter-TSS (NM_001142471) promoter-TSS (NM_001142471) 26 NM_001142471 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 27590 chr8 27033533 27033657 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 15368 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 23764 chr5 175378605 175378751 + 0 NA Intergenic Intergenic 65482 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 20442 chr3 153210813 153210912 + 0 NA Intergenic Intergenic 48650 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 25282 chr6 145964406 145964527 + 0 NA promoter-TSS (NM_001042683) promoter-TSS (NM_001042683) -369 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 22131 chr4 190178073 190178177 + 0 NA intron (NR_137167, intron 2 of 5) BSR/Beta|Satellite|Satellite 4351 NR_137167 100288687 Hs.728749 NM_001205218 ENSG00000260596 DUX4 DUX4L double homeobox 4 protein-coding 22637 chr5 65769601 65769705 + 0 NA intron (NM_020726, intron 3 of 12) intron (NM_020726, intron 3 of 12) 47457 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 23577 chr5 154445796 154445958 + 0 NA promoter-TSS (NR_037897) promoter-TSS (NR_037897) -55 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 19256 chr3 23810937 23810987 + 0 NA intron (NM_001202476, intron 1 of 4) CpG 519 NM_001202476 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 17133 chr2 219968914 219969018 + 0 NA Intergenic L2b|LINE|L2 -62401 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 5841 chr11 92383536 92383640 + 0 NA intron (NM_001008781, intron 1 of 24) L3|LINE|CR1 31492 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 28749 chr8 135190040 135190144 + 0 NA Intergenic Intergenic -44039 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 21411 chr4 67545503 67545652 + 0 NA promoter-TSS (NM_001812) promoter-TSS (NM_001812) -39 NM_001812 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 2072 chr1 172918089 172918193 + 0 NA Intergenic Intergenic 132822 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL tumor necrosis factor superfamily member 18 protein-coding 5647 chr11 73376240 73376344 + 0 NA promoter-TSS (NM_152222) promoter-TSS (NM_152222) -68 NM_152222 84957 Hs.533720 NM_032871 ENSG00000054967 RELT TNFRSF19L|TRLT RELT tumor necrosis factor receptor protein-coding 20691 chr3 175743860 175743964 + 0 NA intron (NM_207015, intron 12 of 13) L2a|LINE|L2 32421 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 15370 chr2 37925441 37925559 + 0 NA promoter-TSS (NM_001322211) promoter-TSS (NM_001322211) -31 NM_001322211 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 24201 chr6 25174192 25174296 + 0 NA Intergenic MIR3|SINE|MIR -35852 NR_027626 8418 Hs.484918 NR_002174 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 25348 chr6 151627842 151627946 + 0 NA Intergenic Intergenic -62602 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 9189 chr14 63852874 63852978 + 0 NA promoter-TSS (NM_015180) promoter-TSS (NM_015180) -39 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 8590 chr13 109383808 109383860 + 0 NA Intergenic Intergenic -16862 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 30687 chrX 48631517 48631599 + 0 NA Intergenic Intergenic 33749 NM_001166426 64743 Hs.521973 NM_017883 ENSG00000101940 WDR13 MG21 WD repeat domain 13 protein-coding 24135 chr6 18156066 18156210 + 0 NA promoter-TSS (NM_000367) promoter-TSS (NM_000367) 750 NM_153042 221656 Hs.709336 NM_153042 ENSG00000165097 KDM1B AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2 lysine demethylase 1B protein-coding 8094 chr13 33634162 33634303 + 0 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 42603 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 3121 chr1 244835424 244835489 + 0 NA promoter-TSS (NM_001312872) promoter-TSS (NM_001312872) -20 NM_001312872 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A COX20, cytochrome c oxidase assembly factor protein-coding 11097 chr16 20676099 20676253 + 0 NA intron (NR_134918, intron 3 of 10) HERV15-int|LTR|ERV1 15080 NM_052956 116285 Hs.306812 NM_052956 ENSG00000166743 ACSM1 BUCS1|MACS1 acyl-CoA synthetase medium-chain family member 1 protein-coding 14253 chr19 17932597 17932701 + 0 NA promoter-TSS (NM_001136203) promoter-TSS (NM_001136203) -366 NM_001136203 115098 Hs.100043 NM_138442 ENSG00000007080 CCDC124 - coiled-coil domain containing 124 protein-coding 9311 chr14 70718873 70718977 + 0 NA Intergenic Intergenic 20227 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 3427 chr10 23703019 23703159 + 0 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 8343 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 2624 chr1 212161524 212161628 + 0 NA Intergenic Intergenic 73160 NR_125982 101929541 Hs.632493 NR_125982 ENSG00000226251 LOC101929541 - uncharacterized LOC101929541 ncRNA 19969 chr3 118745489 118745593 + 0 NA intron (NR_135547, intron 1 of 3) L1MB3|LINE|L1 65292 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 14633 chr19 47776540 47776636 + 0 NA Intergenic MIR|SINE|MIR -1997 NM_003009 6415 Hs.631549 NM_003009 ENSG00000178980 SELENOW SEPW1|selW selenoprotein W protein-coding 29578 chr9 94096942 94097119 + 0 NA intron (NM_177995, intron 6 of 9) intron (NM_177995, intron 6 of 9) 12601 NM_001253829 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 30986 chrX 115393411 115393562 + 0 NA Intergenic MIR3|SINE|MIR 103769 NM_016383 51213 Hs.242183 NM_016383 ENSG00000102021 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 5805 chr11 86726505 86726609 + 0 NA Intergenic Intergenic -53921 NM_001161586 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 28810 chr8 143430768 143430934 + 0 NA promoter-TSS (NM_201589) promoter-TSS (NM_201589) -419 NM_201589 389692 Hs.521914 NM_201589 ENSG00000182759 MAFA RIPE3b1|hMafA MAF bZIP transcription factor A protein-coding 22413 chr5 39232032 39232152 + 0 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) -12514 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 20138 chr3 129888920 129888975 + 0 NA intron (NM_001128224, intron 1 of 5) L1MC3|LINE|L1 4629 NM_001128224 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 19445 chr3 45388458 45388562 + 0 NA promoter-TSS (NM_015340) promoter-TSS (NM_015340) -73 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 14505 chr19 43504164 43504279 + 0 NA intron (NM_198850, intron 1 of 15) CpG-14620 612 NM_198850 653583 Hs.631581 NM_198850 ENSG00000176531 PHLDB3 - pleckstrin homology like domain family B member 3 protein-coding 14605 chr19 46860179 46860309 + 0 NA Intergenic CpG -9249 NM_004069 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 sigma 1 subunit protein-coding 20603 chr3 169112252 169112356 + 0 NA intron (NM_004991, intron 9 of 16) intron (NM_004991, intron 9 of 16) 34001 NM_001105077 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 5790 chr11 86174196 86174286 + 0 NA Intergenic (CTGGCTC)n|Simple_repeat|Simple_repeat -70143 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 5330 chr11 60979020 60979124 + 0 NA intron (NM_001254750, intron 1 of 10) MIRc|SINE|MIR 7431 NM_001254750 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 29905 chr9 113221366 113221520 + 0 NA promoter-TSS (NM_015258) promoter-TSS (NM_015258) -82 NM_015258 23307 Hs.522351 NM_015258 ENSG00000119321 FKBP15 FKBP133|KIAA0674|PPP1R76 FK506 binding protein 15 protein-coding 6986 chr12 50111797 50111980 + 0 NA promoter-TSS (NM_001257133) promoter-TSS (NM_001257133) -93 NM_001257134 84987 Hs.388645 NM_032901 ENSG00000178449 COX14 C12orf62|PCAG1 COX14, cytochrome c oxidase assembly factor protein-coding 22683 chr5 69234794 69234898 + 0 NA promoter-TSS (NM_001324078) promoter-TSS (NM_001324078) 51 NM_001324070 1022 Hs.184298 NM_001799 ENSG00000134058 CDK7 CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15 cyclin dependent kinase 7 protein-coding 4835 chr11 12066099 12066171 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 35260 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LOC105376554 - uncharacterized LOC105376554 ncRNA 22579 chr5 57862576 57862622 + 0 NA Intergenic Intergenic 36563 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 12491 chr17 41654255 41654408 + 0 NA Intergenic Intergenic -14132 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 24587 chr6 43174669 43174799 + 0 NA intron (NM_003131, intron 2 of 6) intron (NM_003131, intron 2 of 6) 2344 NM_001292001 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 23009 chr5 111127558 111127662 + 0 NA 3' UTR (NM_139281, exon 23 of 23) 3' UTR (NM_139281, exon 23 of 23) 35438 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 10167 chr15 57506193 57506266 + 0 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -85675 NR_104368 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 6829 chr12 31403214 31403318 + 0 NA intron (NM_144973, intron 14 of 20) intron (NM_144973, intron 14 of 20) -77041 NM_001135812 58516 Hs.505154 NM_021238 ENSG00000139146 FAM60A C12orf14|L4|TERA family with sequence similarity 60 member A protein-coding 2100 chr1 175220964 175221068 + 0 NA Intergenic MamGypLTR1a|LTR|Gypsy -27923 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 3813 chr10 68988601 68988789 + 0 NA promoter-TSS (NM_015634) promoter-TSS (NM_015634) -26 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 11868 chr17 490085 490135 + 0 NA Intergenic CpG -44170 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 1840 chr1 156123755 156123864 + 0 NA intron (NM_001282625, intron 4 of 12) intron (NM_001282625, intron 4 of 12) -2308 NM_001282624 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 3656 chr10 48306398 48306502 + 0 NA promoter-TSS (NM_001278547) promoter-TSS (NM_001278547) -189 NM_139046 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 27402 chr8 11943746 11943850 + 0 NA Intergenic Intergenic 30801 NM_001033018 613210 Hs.558285 NM_001033018 ENSG00000205884 DEFB136 DEFB137 defensin beta 136 protein-coding 11725 chr16 81531512 81531688 + 0 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -2302 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 19139 chr3 9749893 9750050 + 0 NA promoter-TSS (NM_016820) promoter-TSS (NM_016820) 27 NM_016821 4968 Hs.380271 NM_002542 ENSG00000114026 OGG1 HMMH|HOGG1|MUTM|OGH1 8-oxoguanine DNA glycosylase protein-coding 629 chr1 36306224 36306358 + 0 NA promoter-TSS (NM_001162530) promoter-TSS (NM_001162530) -102 NM_001162530 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 9024 chr14 54182537 54182641 + 0 NA Intergenic AluJr|SINE|Alu -214279 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 372 chr1 24266475 24266579 + 0 NA Intergenic Intergenic -52795 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 27087 chr7 138876022 138876126 + 0 NA intron (NM_020910, intron 12 of 19) L2c|LINE|L2 -77878 NM_130840 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 4525 chr10 122056762 122056857 + 0 NA intron (NM_206861, intron 3 of 19) intron (NM_206861, intron 3 of 19) -56230 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 16249 chr2 121755425 121755585 + 0 NA promoter-TSS (NR_048559) promoter-TSS (NR_048559) -40 NR_048559 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 15778 chr2 71130217 71130321 + 0 NA promoter-TSS (NM_005791) promoter-TSS (NM_005791) -5 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 11242 chr16 30775422 30775526 + 0 NA 3' UTR (NM_014771, exon 20 of 20) 3' UTR (NM_014771, exon 20 of 20) 11745 NM_001345970 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 12266 chr17 28645132 28645270 + 0 NA promoter-TSS (NM_014680) promoter-TSS (NM_014680) -42 NM_001321561 9703 Hs.151761 NM_014680 ENSG00000007202 KIAA0100 BCOX|BCOX1|CT101|FMP27 KIAA0100 protein-coding 7357 chr12 85575798 85575865 + 0 NA Intergenic Intergenic 260709 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 3041 chr1 237678156 237678260 + 0 NA intron (NM_001035, intron 61 of 104) intron (NM_001035, intron 61 of 104) -183967 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 27302 chr7 158856557 158856614 + 0 NA promoter-TSS (NM_018051) promoter-TSS (NM_018051) 7 NM_018051 55112 Hs.389945 NM_018051 ENSG00000126870 WDR60 FAP163|SRPS6|SRTD8 WD repeat domain 60 protein-coding 24275 chr6 28225187 28225336 + 0 NA promoter-TSS (NM_006299) promoter-TSS (NM_006299) 10 NM_001199480 7746 Hs.100921 NM_006299 ENSG00000137185 ZSCAN9 PRD51|ZNF193 zinc finger and SCAN domain containing 9 protein-coding 8380 chr13 76886299 76886431 + 0 NA promoter-TSS (NM_138444) promoter-TSS (NM_138444) 40 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 10021 chr15 45279216 45279345 + 0 NA promoter-TSS (NR_120335) promoter-TSS (NR_120335) -58 NR_120335 101928414 NR_120335 ENSG00000259520 LOC101928414 - uncharacterized LOC101928414 ncRNA 12014 chr17 6823162 6823266 + 0 NA intron (NM_053285, intron 2 of 7) HAL1|LINE|L1 8527 NM_053285 83659 Hs.462108 NM_053285 ENSG00000167858 TEKT1 - tektin 1 protein-coding 30979 chrX 112851431 112851535 + 0 NA Intergenic Intergenic -10668 NM_133265 154796 Hs.528051 NM_133265 ENSG00000126016 AMOT - angiomotin protein-coding 16650 chr2 171922287 171922409 + 0 NA promoter-TSS (NM_003642) promoter-TSS (NM_003642) -77 NM_003642 8520 Hs.632532 NM_003642 ENSG00000128708 HAT1 KAT1 histone acetyltransferase 1 protein-coding 13265 chr18 11500526 11500680 + 0 NA intron (NR_110778, intron 1 of 2) intron (NR_110778, intron 1 of 2) 10555 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 5513 chr11 66336645 66336749 + 0 NA promoter-TSS (NM_004292) promoter-TSS (NM_004292) -168 NM_004292 9610 Hs.1030 NM_004292 ENSG00000174791 RIN1 - Ras and Rab interactor 1 protein-coding 5035 chr11 26623112 26623216 + 0 NA intron (NM_001313726, intron 18 of 27) intron (NM_001313726, intron 18 of 27) -50896 NM_001135091 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 17097 chr2 218270351 218270467 + 0 NA promoter-TSS (NM_001077399) promoter-TSS (NM_001077399) 17 NM_001077399 25953 Hs.98475 NM_015488 ENSG00000127838 PNKD BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2 paroxysmal nonkinesigenic dyskinesia protein-coding 25994 chr7 32495392 32495541 + 0 NA promoter-TSS (NM_001130710) promoter-TSS (NM_001130710) 40 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 24931 chr6 96837555 96837608 + 0 NA promoter-TSS (NM_030784) promoter-TSS (NM_030784) -104 NM_030784 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 19004 chr22 45537800 45537904 + 0 NA intron (NM_006486, intron 8 of 16) intron (NM_006486, intron 8 of 16) 35013 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 15156 chr2 20577991 20578095 + 0 NA Intergenic Intergenic 14505 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 26275 chr7 51045872 51045976 + 0 NA intron (NM_015198, intron 7 of 12) intron (NM_015198, intron 7 of 12) -252462 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 8986 chr14 51240109 51240217 + 0 NA promoter-TSS (NM_030755) promoter-TSS (NM_030755) -5 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 4888 chr11 14381134 14381189 + 0 NA Intergenic CpG -16655 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 1697 chr1 150981821 150981975 + 0 NA promoter-TSS (NM_003568) promoter-TSS (NM_003568) -125 NM_003568 8416 Hs.3346 NM_003568 ENSG00000143412 ANXA9 ANX31 annexin A9 protein-coding 13414 chr18 32549353 32549457 + 0 NA Intergenic Intergenic 37742 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 25292 chr6 146914893 146914997 + 0 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -111121 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 31128 chrX 149373038 149373142 + 0 NA Intergenic Intergenic 132264 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 29997 chr9 117672524 117672610 + 0 NA Intergenic Intergenic 23961 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 28864 chr9 419630 419734 + 0 NA intron (NM_001193536, intron 29 of 46) intron (NM_001193536, intron 29 of 46) -50612 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 22555 chr5 56123932 56124003 + 0 NA intron (NM_024669, intron 8 of 11) intron (NM_024669, intron 8 of 11) 109392 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 9301 chr14 69767023 69767127 + 0 NA promoter-TSS (NM_006925) promoter-TSS (NM_006925) -12 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 26682 chr7 99472765 99472857 + 0 NA promoter-TSS (NM_001013258) promoter-TSS (NM_001013258) -81 NM_001013258 285989 Hs.440384 NM_213603 ENSG00000198556 ZNF789 - zinc finger protein 789 protein-coding 24120 chr6 17393924 17393935 + 0 NA intron (NM_006366, intron 1 of 12) intron (NM_006366, intron 1 of 12) 424 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - CAP, adenylate cyclase-associated protein, 2 (yeast) protein-coding 9107 chr14 59098568 59098672 + 0 NA Intergenic Intergenic -90043 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 17391 chr2 240561200 240561304 + 0 NA promoter-TSS (NM_001308375) promoter-TSS (NM_001308375) -142 NM_001308375 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 8507 chr13 100363964 100364068 + 0 NA intron (NM_001127692, intron 17 of 22) intron (NM_001127692, intron 17 of 22) 116999 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 2246 chr1 186763379 186763483 + 0 NA Intergenic Intergenic -65469 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 18365 chr20 60352141 60352245 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 43719 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 16344 chr2 133435482 133435586 + 0 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 132926 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 18864 chr22 37526518 37526622 + 0 NA Intergenic Intergenic -7367 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 29733 chr9 104977745 104977878 + 0 NA Intergenic L3|LINE|CR1 -49565 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 9336 chr14 72894163 72894294 + 0 NA promoter-TSS (NM_001280542) promoter-TSS (NM_001280542) -112 NM_012074 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 14280 chr19 18919455 18919617 + 0 NA promoter-TSS (NR_033677) promoter-TSS (NR_033677) -133 NM_001330469 11316 Hs.10326 NM_007263 ENSG00000105669 COPE epsilon-COP coatomer protein complex subunit epsilon protein-coding 6146 chr11 118074915 118075011 + 0 NA intron (NR_038318, intron 1 of 3) intron (NR_038318, intron 1 of 3) -2049 NM_019894 56649 Hs.161985 NM_019894 ENSG00000137648 TMPRSS4 CAPH2|MT-SP2|TMPRSS3 transmembrane protease, serine 4 protein-coding 24285 chr6 28838940 28839070 + 0 NA Intergenic CpG 24672 NR_033379 401242 Hs.448285 NR_033379 ENSG00000225595 LINC01623 - long intergenic non-protein coding RNA 1623 ncRNA 18929 chr22 40346438 40346542 + 0 NA promoter-TSS (NM_001317923) promoter-TSS (NM_001317923) -10 NR_134256 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 7705 chr12 116924649 116924741 + 0 NA intron (NM_153348, intron 1 of 10) intron (NM_153348, intron 1 of 10) 13739 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 30483 chrX 10634790 10634915 + 0 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -14218 NM_000381 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 22457 chr5 42945092 42945196 + 0 NA Intergenic Intergenic 48189 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 12765 chr17 58007322 58007426 + 0 NA promoter-TSS (NM_001078166) promoter-TSS (NM_001078166) -28 NM_006924 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 13716 chr18 63683278 63683432 + 0 NA Intergenic Intergenic -18949 NM_080475 89778 Hs.350958 NM_080475 ENSG00000206072 SERPINB11 EPIPIN|SERPIN11 serpin family B member 11 (gene/pseudogene) protein-coding 6202 chr11 120055769 120055864 + 0 NA Intergenic Intergenic 73097 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 6122 chr11 115941591 115941703 + 0 NA Intergenic Intergenic -181447 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 1781 chr1 154183267 154183417 + 0 NA promoter-TSS (NM_001278189) promoter-TSS (NM_001278189) -93 NM_001278190 7170 Hs.535581 NM_152263 ENSG00000143549 TPM3 CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPMsk3|TRK|hscp30 tropomyosin 3 protein-coding 7109 chr12 55933362 55933451 + 0 NA intron (NM_201444, intron 1 of 23) intron (NM_201444, intron 1 of 23) 1378 NM_201554 1606 Hs.524488 NM_001345 ENSG00000065357 DGKA DAGK|DAGK1|DGK-alpha diacylglycerol kinase alpha protein-coding 2157 chr1 180586879 180587021 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 27976 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 15590 chr2 56582717 56582821 + 0 NA Intergenic Intergenic -396999 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 26104 chr7 40733272 40733376 + 0 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 246615 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 16992 chr2 207395062 207395194 + 0 NA Intergenic LTR44|LTR|ERV1 -125704 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 15502 chr2 47043688 47043771 + 0 NA intron (NM_020458, intron 15 of 19) intron (NM_020458, intron 15 of 19) -101874 NM_001171511 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 22222 chr5 10703139 10703243 + 0 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 58084 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 20432 chr3 153042906 153043010 + 0 NA Intergenic Intergenic -119254 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 13615 chr18 55100952 55101087 + 0 NA Intergenic Intergenic 23287 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 24757 chr6 63635756 63635880 + 0 NA promoter-TSS (NM_001290259) promoter-TSS (NM_001290259) 16 NM_001290259 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 25252 chr6 142945117 142945229 + 0 NA promoter-TSS (NM_006734) promoter-TSS (NM_006734) 28 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 12826 chr17 62966153 62966257 + 0 NA Intergenic CpG 21990 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 14656 chr19 48695856 48695942 + 0 NA promoter-TSS (NM_001097638) promoter-TSS (NM_001097638) -72 NM_000511 2524 Hs.579928 NM_000511 ENSG00000176920 FUT2 B12QTL1|SE|SEC2|Se2|sej fucosyltransferase 2 protein-coding 4886 chr11 14358473 14358577 + 0 NA promoter-TSS (NM_001102669) promoter-TSS (NM_001102669) 2 NM_001102669 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 20445 chr3 153350633 153350721 + 0 NA Intergenic Intergenic -133818 NM_001101337 152118 Hs.58586 NM_001101337 C3orf79 - chromosome 3 open reading frame 79 protein-coding 31146 chrX 150772326 150772404 + 0 NA intron (NM_001242614, intron 9 of 11) intron (NM_001242614, intron 9 of 11) 79001 NM_001306145 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 18022 chr20 41028534 41028573 + 0 NA promoter-TSS (NM_003286) promoter-TSS (NM_003286) -265 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 7126 chr12 56189620 56189773 + 0 NA promoter-TSS (NM_001330288) promoter-TSS (NM_001330288) -122 NM_001330288 6601 Hs.236030 NM_003075 ENSG00000139613 SMARCC2 BAF170|CRACC2|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 protein-coding 28115 chr8 83149749 83149868 + 0 NA Intergenic MER61D|LTR|ERV1 237704 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 9721 chr14 103334049 103334183 + 0 NA promoter-TSS (NM_183004) promoter-TSS (NM_183004) 114 NM_001969 1983 Hs.433702 NM_001969 ENSG00000100664 EIF5 EIF-5|EIF-5A eukaryotic translation initiation factor 5 protein-coding 19221 chr3 16550959 16551063 + 0 NA Intergenic Intergenic 14693 NR_103843 100996597 Hs.599432 NR_103843 ENSG00000233570 LINC00690 - long intergenic non-protein coding RNA 690 ncRNA 12496 chr17 41688588 41688692 + 0 NA promoter-TSS (NM_005801) promoter-TSS (NM_005801) -235 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 21609 chr4 98929960 98930078 + 0 NA promoter-TSS (NM_001130678) promoter-TSS (NM_001130678) 618 NM_001331017 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 19976 chr3 119160498 119160643 + 0 NA Intergenic Intergenic -13008 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 14024 chr19 7829770 7829778 + 0 NA promoter-TSS (NM_145245) promoter-TSS (NM_145245) -501 NM_145245 115704 Hs.26870 NM_145245 ENSG00000142459 EVI5L - ecotropic viral integration site 5 like protein-coding 29770 chr9 107243939 107244072 + 0 NA Intergenic Intergenic -39231 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 2363 chr1 201275436 201275567 + 0 NA Intergenic Intergenic -7951 NM_001005337 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 9570 chr14 92540745 92540823 + 0 NA intron (NM_024832, intron 1 of 9) intron (NM_024832, intron 1 of 9) 27003 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 27670 chr8 34994277 34994365 + 0 NA Intergenic Intergenic 210400 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 24380 chr6 31815432 31815578 + 0 NA promoter-TSS (NM_005345).4 promoter-TSS (NM_005345).4 -9 NM_005345 3303 Hs.274402 NM_005345 ENSG00000204389 HSPA1A HEL-S-103|HSP70-1|HSP70-1A|HSP70.1|HSP70I|HSP72|HSPA1 heat shock protein family A (Hsp70) member 1A protein-coding 30949 chrX 108071140 108071244 + 0 NA intron (NM_001170553, intron 4 of 7) intron (NM_001170553, intron 4 of 7) 20452 NM_002814 5716 Hs.522752 NM_002814 ENSG00000101843 PSMD10 dJ889N15.2|p28|p28(GANK) proteasome 26S subunit, non-ATPase 10 protein-coding 27014 chr7 130913460 130913657 + 0 NA promoter-TSS (NR_109780) promoter-TSS (NR_109780) 94 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 29913 chr9 113564923 113565027 + 0 NA promoter-TSS (NM_001322215) promoter-TSS (NM_001322215) 21 NM_134427 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 3088 chr1 242200120 242200293 + 0 NA intron (NM_152666, intron 6 of 10) intron (NM_152666, intron 6 of 10) -201123 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 27985 chr8 69025819 69025923 + 0 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 78319 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 14794 chr19 55075776 55075890 + 0 NA promoter-TSS (NM_133180) promoter-TSS (NM_133180) -20 NM_133180 54869 Hs.438862 NM_017729 ENSG00000131037 EPS8L1 DRC3|EPS8R1|PP10566 EPS8 like 1 protein-coding 5910 chr11 95831293 95831397 + 0 NA 3' UTR (NM_001243776, exon 12 of 12) 3' UTR (NM_001243776, exon 12 of 12) 40884 NM_001243777 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 26240 chr7 48274848 48274952 + 0 NA exon (NM_152701, exon 17 of 62) exon (NM_152701, exon 17 of 62) 103440 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 354 chr1 23589067 23589171 + 0 NA Intergenic MER74B|LTR|ERVL -29325 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 15484 chr2 46297157 46297261 + 0 NA promoter-TSS (NM_001430) promoter-TSS (NM_001430) -193 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 3878 chr10 72676564 72676668 + 0 NA Intergenic Intergenic -15515 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 29447 chr9 86732654 86732758 + 0 NA Intergenic Intergenic 214483 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 10915 chr16 3112439 3112543 + 0 NA promoter-TSS (NM_001042428) promoter-TSS (NM_001042428) -71 NM_001042428 7755 Hs.592088 NM_003456 ENSG00000122386 ZNF205 RhitH|ZNF210|Zfp13 zinc finger protein 205 protein-coding 1064 chr1 67163101 67163205 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -3333 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 11762 chr16 84116783 84116946 + 0 NA promoter-TSS (NM_003791) promoter-TSS (NM_003791) 79 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 25412 chr6 158069021 158069059 + 0 NA intron (NM_001178088, intron 12 of 25) intron (NM_001178088, intron 12 of 25) 51992 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 20929 chr3 190003752 190003856 + 0 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) -117160 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 16778 chr2 183124841 183124945 + 0 NA intron (NR_109856, intron 1 of 7) intron (NR_109856, intron 1 of 7) 538 NM_001287585 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 12246 chr17 27551993 27552097 + 0 NA intron (NM_014238, intron 3 of 20) L2a|LINE|L2 -79103 NR_024043 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 16305 chr2 128949564 128949668 + 0 NA Intergenic Intergenic 85016 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 23913 chr6 3808995 3809167 + 0 NA Intergenic Intergenic -40285 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 19130 chr3 9169475 9169628 + 0 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) -22942 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 7761 chr12 120686377 120686518 + 0 NA promoter-TSS (NM_001303628) promoter-TSS (NM_001303628) -677 NM_014730 9761 Hs.744910 NM_014730 ENSG00000110917 MLEC KIAA0152 malectin protein-coding 28203 chr8 93917546 93917709 + 0 NA intron (NM_001161781, intron 1 of 1) CpG 576 NM_001161781 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 19806 chr3 105647154 105647258 + 0 NA Intergenic AluJb|SINE|Alu 220385 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 16114 chr2 110101584 110101649 + 0 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) 14950 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T-cell differentiation protein like protein-coding 12351 chr17 34781520 34781612 + 0 NA Intergenic Intergenic 179943 NM_006584 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 1217 chr1 85571983 85572110 + 0 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) 6317 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 22247 chr5 14190431 14190587 + 0 NA intron (NR_134469, intron 1 of 56) intron (NR_134469, intron 1 of 56) 46807 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 23465 chr5 148776891 148777045 + 0 NA Intergenic MER6A|DNA|TcMar-Tigger -49625 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 11065 chr16 17273254 17273358 + 0 NA intron (NM_022166, intron 2 of 11) MER20B|DNA|hAT-Charlie 138802 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 25379 chr6 155026604 155026708 + 0 NA Intergenic Intergenic -63633 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 2750 chr1 221449882 221449986 + 0 NA Intergenic Intergenic -113638 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 21444 chr4 74109110 74109214 + 0 NA Intergenic Intergenic -9882 NM_002089 2920 Hs.75765 NM_002089 ENSG00000081041 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 C-X-C motif chemokine ligand 2 protein-coding 4165 chr10 97584122 97584281 + 0 NA promoter-TSS (NM_001134670) promoter-TSS (NM_001134670) -144 NM_001134670 112817 Hs.180346 NM_138413 ENSG00000241935 HOGA1 C10orf65|DHDPS2|DHDPSL|HP3|NPL2 4-hydroxy-2-oxoglutarate aldolase 1 protein-coding 8218 chr13 45368733 45368837 + 0 NA intron (NR_024458, intron 3 of 10) intron (NR_024458, intron 3 of 10) 27440 NR_024458 100190939 Hs.375766 NR_024458 TPT1-AS1 - TPT1 antisense RNA 1 ncRNA 15081 chr2 16425753 16425857 + 0 NA Intergenic Intergenic 240061 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 13108 chr17 80792073 80792128 + 0 NA intron (NM_020761, intron 7 of 33) intron (NM_020761, intron 7 of 33) 13532 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 30471 chrX 8721657 8721761 + 0 NA intron (NM_000216, intron 1 of 13) intron (NM_000216, intron 1 of 13) 10478 NM_000216 3730 Hs.521869 NM_000216 ENSG00000011201 ANOS1 ADMLX|HH1|HHA|KAL|KAL1|KALIG-1|KMS|WFDC19 anosmin 1 protein-coding 13859 chr19 1275733 1275888 + 0 NA exon (NM_017914, exon 1 of 3) exon (NM_017914, exon 1 of 3) 289 NM_017914 55009 Hs.591383 NM_017914 ENSG00000228300 C19orf24 - chromosome 19 open reading frame 24 protein-coding 1004 chr1 63523286 63523428 + 0 NA promoter-TSS (NM_001206739) promoter-TSS (NM_001206739) 56 NM_032437 84455 Hs.652324 NM_032437 ENSG00000203965 EFCAB7 - EF-hand calcium binding domain 7 protein-coding 6574 chr12 8949702 8949775 + 0 NA promoter-TSS (NM_002355) promoter-TSS (NM_002355) 23 NM_001207024 4074 Hs.134084 NM_002355 ENSG00000003056 M6PR CD-M6PR|CD-MPR|MPR 46|MPR-46|MPR46|SMPR mannose-6-phosphate receptor, cation dependent protein-coding 18276 chr20 55103387 55103491 + 0 NA Intergenic MER61E|LTR|ERV1 -319604 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 30491 chrX 11899175 11899279 + 0 NA Intergenic OldhAT1|DNA|hAT-Ac 139611 NM_006800 10943 Hs.655288 NM_006800 ENSG00000005302 MSL3 MSL3L1 male-specific lethal 3 homolog (Drosophila) protein-coding 28941 chr9 14846943 14847047 + 0 NA intron (NM_144966, intron 8 of 37) intron (NM_144966, intron 8 of 37) 64000 NM_144966 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 11565 chr16 69565702 69565899 + 0 NA promoter-TSS (NM_173215) promoter-TSS (NM_173215) 68 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 8853 chr14 35046146 35046182 + 0 NA promoter-TSS (NM_001289022) promoter-TSS (NM_001289022) -89 NM_001289022 283635 Hs.446357 NM_173607 ENSG00000151327 FAM177A1 C14orf24 family with sequence similarity 177 member A1 protein-coding 16285 chr2 127831030 127831134 + 0 NA Intergenic LTR18A|LTR|ERVL -19895 NM_001006623 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 16001 chr2 98799118 98799212 + 0 NA intron (NM_207362, intron 7 of 9) intron (NM_207362, intron 7 of 9) -27267 NR_126337 101927070 Hs.469395 NR_126337 LOC101927070 - uncharacterized LOC101927070 ncRNA 18293 chr20 56606601 56606770 + 0 NA Intergenic Intergenic -22617 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 12624 chr17 48107527 48107631 + 0 NA promoter-TSS (NM_152244) promoter-TSS (NM_152244) -6 NM_013323 29916 Hs.15827 NM_013323 ENSG00000002919 SNX11 - sorting nexin 11 protein-coding 23201 chr5 132258488 132258592 + 0 NA intron (NM_003687, intron 1 of 6) intron (NM_003687, intron 1 of 6) 882 NM_003687 8572 Hs.424312 NM_003687 ENSG00000131435 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 14050 chr19 9435583 9435687 + 0 NA promoter-TSS (NM_001271314) promoter-TSS (NM_001271314) -57 NM_001271314 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 5688 chr11 76577346 76577474 + 0 NA Intergenic Intergenic 92590 NM_005512 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 13296 chr18 21672987 21673091 + 0 NA intron (NM_138340, intron 4 of 8) intron (NM_138340, intron 4 of 8) -8825 NM_001308257 171586 Hs.397978 NM_138340 ENSG00000158201 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 1693 chr1 150876783 150876784 + 0 NA promoter-TSS (NM_001197325) promoter-TSS (NM_001197325) -15 NM_001668 405 Hs.632446 NM_001668 ENSG00000143437 ARNT HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2 aryl hydrocarbon receptor nuclear translocator protein-coding 27226 chr7 151116207 151116311 + 0 NA intron (NM_001308305, intron 1 of 8) intron (NM_001308305, intron 1 of 8) 1581 NM_001308305 116988 Hs.647075 NM_031946 ENSG00000133612 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 1806 chr1 155135775 155135894 + 0 NA promoter-TSS (NM_001122837) promoter-TSS (NM_001122837) 22 NM_001122839 55974 Hs.292154 NM_018845 ENSG00000169241 SLC50A1 HsSWEET1|RAG1AP1|SCP|SWEET1|slv solute carrier family 50 member 1 protein-coding 4013 chr10 85528193 85528297 + 0 NA Intergenic Intergenic -49486 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 16597 chr2 165055202 165055280 + 0 NA Intergenic Intergenic -99716 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 11941 chr17 3723786 3723833 + 0 NA promoter-TSS (NM_031965) promoter-TSS (NM_031965) -94 NM_031965 83903 Hs.534059 NM_031965 ENSG00000177602 GSG2 HASPIN germ cell associated 2, haspin protein-coding 30206 chr9 128892488 128892619 + 0 NA intron (NM_001127244, intron 2 of 3) intron (NM_001127244, intron 2 of 3) 10051 NM_001127244 56262 Hs.643600 NM_019594 ENSG00000136802 LRRC8A AGM5|LRRC8|SWELL1 leucine rich repeat containing 8 family member A protein-coding 29594 chr9 94914307 94914449 + 0 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 104416 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 7369 chr12 87440082 87440241 + 0 NA Intergenic LTR8B|LTR|ERV1 109422 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 6765 chr12 26299070 26299203 + 0 NA Intergenic Intergenic 103563 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 1370 chr1 96560255 96560359 + 0 NA Intergenic LTR26|LTR|ERV1 -161298 NM_001300986 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 18461 chr21 30147044 30147093 + 0 NA Intergenic LTR19A|LTR|ERV1 19585 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 4251 chr10 102421062 102421195 + 0 NA 5' UTR (NM_024326, exon 1 of 4) 5' UTR (NM_024326, exon 1 of 4) -1194 NM_001270965 5662 Hs.154658 NM_002779 ENSG00000059915 PSD EFA6|EFA6A|PSD1|TYL pleckstrin and Sec7 domain containing protein-coding 23693 chr5 169980501 169980605 + 0 NA 5' UTR (NM_001129891, exon 1 of 4) 5' UTR (NM_001129891, exon 1 of 4) 204 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 FAM196B C5orf57 family with sequence similarity 196 member B protein-coding 4809 chr11 10350536 10350640 + 0 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) 42275 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 22351 chr5 33658112 33658156 + 0 NA intron (NM_001324512, intron 7 of 21) intron (NM_001324512, intron 7 of 21) 217358 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 16937 chr2 202635916 202636020 + 0 NA intron (NM_173511, intron 1 of 7) (GCCCC)n|Simple_repeat|Simple_repeat 790 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 3668 chr10 49734796 49734900 + 0 NA non-coding (NR_144682, exon 21 of 21) non-coding (NR_144682, exon 21 of 21) 27151 NM_001347819 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase-like protein-coding 22668 chr5 68277451 68277555 + 0 NA intron (NM_181523, intron 4 of 15) intron (NM_181523, intron 4 of 15) -10921 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 17784 chr20 23540842 23540946 + 0 NA intron (NR_001279, intron 3 of 3) intron (NR_001279, intron 3 of 3) 21748 NR_001279 164380 Hs.400007 NR_001279 ENSG00000204663 CST13P CSTT|CTES6 cystatin 13, pseudogene pseudo 9733 chr14 103910348 103910452 + 0 NA Intergenic Intergenic 11166 NM_001127393 9556 Hs.109052 NM_004894 ENSG00000156411 C14orf2 MP68|PLPM chromosome 14 open reading frame 2 protein-coding 3804 chr10 68153670 68153814 + 0 NA intron (NR_045663, intron 6 of 17) intron (NR_045663, intron 6 of 17) 44309 NM_001256268 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|RCM4 myopalladin protein-coding 18900 chr22 38705700 38705712 + 0 NA promoter-TSS (NM_004286) promoter-TSS (NM_004286) -96 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 19475 chr3 48609623 48609782 + 0 NA promoter-TSS (NM_003365) promoter-TSS (NM_003365) -37 NM_003365 7384 Hs.119251 NM_003365 ENSG00000010256 UQCRC1 D3S3191|QCR1|UQCR1 ubiquinol-cytochrome c reductase core protein I protein-coding 5483 chr11 65555810 65555914 + 0 NA intron (NM_001164266, intron 1 of 26) intron (NM_001164266, intron 1 of 26) 2366 NM_001130144 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 17153 chr2 222000462 222000566 + 0 NA Intergenic Intergenic -297633 NM_153038 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 protein-coding 27514 chr8 22604596 22604759 + 0 NA promoter-TSS (NR_033902) promoter-TSS (NR_033902) 45 NR_033902 57805 Hs.744848 NM_021174 ENSG00000158941 CCAR2 DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC cell cycle and apoptosis regulator 2 protein-coding 20295 chr3 141829020 141829124 + 0 NA Intergenic Intergenic -47520 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 15810 chr2 73737463 73737520 + 0 NA promoter-TSS (NM_016058) promoter-TSS (NM_016058) -85 NM_001330390 51002 Hs.157401 NM_016058 ENSG00000144034 TPRKB CGI-121|CGI121 TP53RK binding protein protein-coding 14641 chr19 48330188 48330288 + 0 NA intron (NM_001425, intron 4 of 4) CpG 4239 NM_001313905 2014 Hs.9999 NM_001425 ENSG00000142227 EMP3 YMP epithelial membrane protein 3 protein-coding 23909 chr6 3511618 3511688 + 0 NA Intergenic MSTB1|LTR|ERVL-MaLR -55094 NM_015482 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 28806 chr8 143291405 143291522 + 0 NA promoter-TSS (NM_030895) promoter-TSS (NM_030895) 74 NM_030895 79943 Hs.512740 NM_030895 ENSG00000185730 ZNF696 - zinc finger protein 696 protein-coding 9758 chr14 105491129 105491143 + 0 NA promoter-TSS (NM_001134875) promoter-TSS (NM_001134875) -113 NM_001134875 283643 Hs.720306 NM_173608 ENSG00000185347 C14orf80 - chromosome 14 open reading frame 80 protein-coding 4254 chr10 102450402 102450506 + 0 NA 3' UTR (NM_024886, exon 2 of 2) 3' UTR (NM_024886, exon 2 of 2) 637 NR_038937 100505761 Hs.656457 NR_038937 ENSG00000269609 RPARP-AS1 - RPARP antisense RNA 1 ncRNA 15395 chr2 39120976 39121089 + 0 NA promoter-TSS (NM_005633) promoter-TSS (NM_005633) -569 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 22833 chr5 86617833 86617977 + 0 NA promoter-TSS (NM_001867) promoter-TSS (NM_001867) -62 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 15352 chr2 36889890 36889994 + 0 NA intron (NM_003162, intron 7 of 17) intron (NM_003162, intron 7 of 17) 76530 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 15314 chr2 31441032 31441066 + 0 NA Intergenic MIRb|SINE|MIR -26304 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 22195 chr5 9269196 9269300 + 0 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -215353 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 2485 chr1 205543475 205543585 + 0 NA Intergenic Intergenic 13105 NR_027086 284578 Hs.537020 NR_027086 LOC284578 - uncharacterized LOC284578 ncRNA 10365 chr15 69760973 69761162 + 0 NA Intergenic Intergenic -74167 NR_026764 414926 Hs.569502 NR_026764 ENSG00000259703 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 28162 chr8 89474377 89474481 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 283282 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 25067 chr6 118776905 118776968 + 0 NA Intergenic MIRc|SINE|MIR -5772 NR_037662 100287632 Hs.334026 NR_037662 LOC100287632 - selenoprotein K pseudogene pseudo 24671 chr6 49541366 49541470 + 0 NA Intergenic Intergenic -8982 NM_001145652 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 8794 chr14 31244126 31244230 + 0 NA Intergenic LTR10F|LTR|ERV1 -36655 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 4853 chr11 12724864 12724968 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 50494 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 7955 chr13 21637409 21637538 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -33257 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 5304 chr11 59144819 59144927 + 0 NA promoter-TSS (NM_001312911) promoter-TSS (NM_001312911) 94 NM_001312911 63901 Hs.150651 NM_022074 ENSG00000166801 FAM111A GCLEB|KCS2 family with sequence similarity 111 member A protein-coding 22520 chr5 53253651 53253755 + 0 NA Intergenic Intergenic 143861 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 21907 chr4 152259180 152259284 + 0 NA Intergenic Intergenic -78423 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 pseudo 4470 chr10 119165834 119165920 + 0 NA promoter-TSS (NM_213649) promoter-TSS (NM_213649) -185 NR_110305 119559 Hs.655168 NM_178867 ENSG00000183605 SFXN4 BCRM1|COXPD18 sideroflexin 4 protein-coding 17335 chr2 236770043 236770084 + 0 NA Intergenic Intergenic 200326 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 9560 chr14 91836669 91836773 + 0 NA promoter-TSS (NM_001128595) promoter-TSS (NM_001128595) -195 NM_152332 123036 Hs.510262 NM_152332 ENSG00000165929 TC2N C14orf47|C2CD1|MTAC2D1|Tac2-N tandem C2 domains, nuclear protein-coding 28266 chr8 97929164 97929268 + 0 NA intron (NM_002380, intron 2 of 18) intron (NM_002380, intron 2 of 18) 60195 NM_001317748 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 20294 chr3 141738081 141738162 + 0 NA promoter-TSS (NM_183237) promoter-TSS (NM_183237) -88 NM_014245 9616 Hs.134623 NM_014245 ENSG00000114125 RNF7 CKBBP1|ROC2|SAG ring finger protein 7 protein-coding 18753 chr22 28899362 28899466 + 0 NA intron (NM_001206998, intron 1 of 8) intron (NM_001206998, intron 1 of 8) 15647 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 12290 chr17 29711006 29711184 + 0 NA intron (NM_001282130, intron 2 of 7) intron (NM_001282130, intron 2 of 7) 50337 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 28954 chr9 18633061 18633165 + 0 NA intron (NM_001040272, intron 5 of 28) intron (NM_001040272, intron 5 of 28) 59807 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 12234 chr17 27226734 27226838 + 0 NA Intergenic Tigger3|DNA|TcMar-Tigger 67210 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 4543 chr10 123008784 123008925 + 0 NA promoter-TSS (NR_073475) promoter-TSS (NR_073475) -4 NR_073479 64376 Hs.501289 NM_001271840 ENSG00000095574 IKZF5 PEGASUS|ZNFN1A5 IKAROS family zinc finger 5 protein-coding 10959 chr16 4734316 4734470 + 0 NA promoter-TSS (NM_001324130) promoter-TSS (NM_001324130) -16 NM_001308089 124401 Hs.654859 NM_133450 ENSG00000168096 ANKS3 - ankyrin repeat and sterile alpha motif domain containing 3 protein-coding 5242 chr11 47194230 47194279 + 0 NA Intergenic Intergenic -7795 NM_001184974 29763 Hs.334639 NM_016223 ENSG00000165912 PACSIN3 SDPIII protein kinase C and casein kinase substrate in neurons 3 protein-coding 29624 chr9 96383676 96383780 + 0 NA promoter-TSS (NR_104627) promoter-TSS (NR_104627) -18 NM_001286990 11046 Hs.494556 NM_007001 ENSG00000130958 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 member D2 protein-coding 29311 chr9 77879699 77879803 + 0 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) 151698 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 29349 chr9 79883368 79883472 + 0 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) 58890 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 502 chr1 29640134 29640238 + 0 NA Intergenic MIRb|SINE|MIR -290072 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 30078 chr9 123336592 123336609 + 0 NA Intergenic MIR3|SINE|MIR -19567 NM_173689 286204 Hs.568340 NM_173689 ENSG00000148204 CRB2 FSGS9|VMCKD crumbs 2, cell polarity complex component protein-coding 26343 chr7 66099857 66099988 + 0 NA Intergenic Intergenic -14896 NM_001142414 27297 Hs.300684 NM_014478 ENSG00000241258 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9 CGRP receptor component protein-coding 17269 chr2 231604834 231604931 + 0 NA Intergenic CpG 12018 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 1796 chr1 154936642 154936720 + 0 NA promoter-TSS (NM_001323011) promoter-TSS (NM_001323011) -219 NM_001323011 10654 Hs.30954 NM_006556 ENSG00000163344 PMVK HUMPMKI|PMK|PMKA|PMKASE|POROK1 phosphomevalonate kinase protein-coding 11844 chr16 89431792 89431896 + 0 NA intron (NR_110932, intron 1 of 2) intron (NR_110932, intron 1 of 2) 926 NR_110932 101927817 Hs.667942 NR_110931 LOC101927817 - uncharacterized LOC101927817 ncRNA 22432 chr5 40552336 40552440 + 0 NA Intergenic Intergenic -127542 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 5921 chr11 96134750 96134846 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -206640 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 17527 chr20 5397681 5397764 + 0 NA Intergenic Intergenic 48026 NR_038240 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 27056 chr7 135170683 135170816 + 0 NA promoter-TSS (NM_001305629) promoter-TSS (NM_001305629) 77 NM_001243749 78996 Hs.643113 NM_024033 ENSG00000122783 C7orf49 MRI|MRI-2 chromosome 7 open reading frame 49 protein-coding 23732 chr5 172777595 172777699 + 0 NA Intergenic Intergenic -6447 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 17643 chr20 13525399 13525473 + 0 NA intron (NR_136631, intron 10 of 13) intron (NR_136631, intron 10 of 13) 113500 NM_001323602 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 12706 chr17 51947293 51947397 + 0 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 211427 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 9553 chr14 91060689 91060827 + 0 NA promoter-TSS (NM_001322238) promoter-TSS (NM_001322238) -109 NM_004755 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 25373 chr6 154466322 154466396 + 0 NA intron (NM_173515, intron 1 of 12) intron (NM_173515, intron 1 of 12) 44260 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 MAGI1 CNKSR family member 3 protein-coding 25589 chr7 4973953 4974079 + 0 NA promoter-TSS (NR_015449) promoter-TSS (NR_015449) 31 NR_023385 441191 Hs.520636 NR_015449 ENSG00000196204 RNF216P1 RNF216L|hCG2040556 ring finger protein 216 pseudogene 1 pseudo 17662 chr20 14919800 14919969 + 0 NA intron (NR_072988, intron 1 of 1) intron (NR_072988, intron 1 of 1) 9634 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 20579 chr3 166444417 166444537 + 0 NA Intergenic LTR2752|LTR|ERV1 -454206 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 23546 chr5 151591295 151591399 + 0 NA Intergenic GA-rich|Low_complexity|Low_complexity -22403 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 22524 chr5 53334468 53334572 + 0 NA Intergenic Intergenic -145914 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 6463 chr12 3454506 3454610 + 0 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -36640 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 26856 chr7 115231250 115231393 + 0 NA promoter-TSS (NR_126407) promoter-TSS (NR_126407) 34 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 21685 chr4 108650266 108650375 + 0 NA promoter-TSS (NM_001267817) promoter-TSS (NM_001267817) -265 NM_001267818 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 19624 chr3 64238992 64239170 + 0 NA Intergenic Intergenic -13626 NM_198859 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 16334 chr2 131802603 131802705 + 0 NA promoter-TSS (NM_214461).2 promoter-TSS (NM_214461).2 -993 NM_214461 408029 Hs.145567 NM_214461 C2orf27B - chromosome 2 open reading frame 27B protein-coding 5878 chr11 94623318 94623415 + 0 NA intron (NR_135096, intron 4 of 6) intron (NR_135096, intron 4 of 6) 56058 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 3328 chr10 14878328 14878439 + 0 NA promoter-TSS (NM_001193424) promoter-TSS (NM_001193424) -400 NM_001193426 79723 Hs.554883 NM_024670 ENSG00000152455 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 protein-coding 22786 chr5 80407893 80407997 + 0 NA promoter-TSS (NM_001284237) promoter-TSS (NM_001284237) -68 NM_001284236 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 20166 chr3 132225773 132225916 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -91523 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 22210 chr5 10452905 10453009 + 0 NA intron (NM_031916, intron 3 of 4) intron (NM_031916, intron 3 of 4) 11095 NM_001201466 83853 Hs.381089 NM_031916 ENSG00000145491 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1 like protein-coding 2005 chr1 166902310 166902414 + 0 NA Intergenic Intergenic -25945 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 29407 chr9 84862945 84863049 + 0 NA intron (NM_001018065, intron 13 of 14) MER74A|LTR|ERVL 192620 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 13558 chr18 49723756 49723815 + 0 NA Intergenic Intergenic 90096 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 7226 chr12 64611005 64611044 + 0 NA intron (NR_040718, intron 1 of 3) CpG 511 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 16394 chr2 139031918 139031946 + 0 NA Intergenic L1M2a|LINE|L1 134608 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 23368 chr5 141524899 141524939 + 0 NA intron (NM_001079812, intron 25 of 26) intron (NM_001079812, intron 25 of 26) -33392 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 23512 chr5 150357621 150357725 + 0 NA promoter-TSS (NM_001195141) promoter-TSS (NM_001195141) 34 NM_001008657 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 18637 chr22 19941600 19941704 + 0 NA promoter-TSS (NM_000754) promoter-TSS (NM_000754) -88 NM_000754 1312 Hs.370408 NM_000754 ENSG00000093010 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 831 chr1 46747867 46747971 + 0 NA Intergenic Intergenic -28855 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 18478 chr21 32771637 32771744 + 0 NA promoter-TSS (NR_024622) promoter-TSS (NR_024622) 168 NR_027873 94104 Hs.644004 NM_013329 ENSG00000159086 PAXBP1 BM020|C21orf66|FSAP105|GCFC|GCFC1 PAX3 and PAX7 binding protein 1 protein-coding 5879 chr11 94639927 94640079 + 0 NA intron (NR_135096, intron 4 of 6) MER61A|LTR|ERV1 72695 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 5013 chr11 23288119 23288223 + 0 NA Intergenic LTR8B|LTR|ERV1 131019 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 29178 chr9 71446590 71446694 + 0 NA Intergenic CpG 322242 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 19613 chr3 61251427 61251562 + 0 NA promoter-TSS (NM_001320899) promoter-TSS (NM_001320899) -33 NM_001166243 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 5507 chr11 66081597 66081747 + 0 NA intron (NM_018026, intron 1 of 23) intron (NM_018026, intron 1 of 23) 11319 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 24066 chr6 13454057 13454090 + 0 NA intron (NM_018988, intron 1 of 1) MLT1C|LTR|ERVL-MaLR 17990 NR_038459 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 29883 chr9 112065915 112066015 + 0 NA intron (NM_022486, intron 12 of 16) MIRb|SINE|MIR 109332 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 8303 chr13 52881828 52881932 + 0 NA Intergenic LTR33|LTR|ERVL -33240 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 16413 chr2 144099871 144099975 + 0 NA intron (NM_001284235, intron 6 of 6) MIRc|SINE|MIR 111656 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 5762 chr11 84714411 84714515 + 0 NA intron (NM_001142699, intron 6 of 27) intron (NM_001142699, intron 6 of 27) 208958 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 16722 chr2 177474468 177474572 + 0 NA intron (NM_003659, intron 10 of 19) MER61C|LTR|ERV1 78276 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 14212 chr19 16161071 16161175 + 0 NA TTS (NM_001300922) TTS (NM_001300922) 12402 NM_054113 117286 Hs.255432 NM_054113 ENSG00000141977 CIB3 KIP3 calcium and integrin binding family member 3 protein-coding 17201 chr2 226137651 226137783 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -5077 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 23441 chr5 146447218 146447259 + 0 NA promoter-TSS (NM_006706) promoter-TSS (NM_006706) -72 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 13742 chr18 67767017 67767121 + 0 NA intron (NR_033921, intron 1 of 4) Tigger3b|DNA|TcMar-Tigger -250339 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4 dermatan sulfate epimerase-like protein-coding 24760 chr6 64520181 64520285 + 0 NA intron (NM_001292009, intron 26 of 43) LTR78|LTR|ERV1 -781185 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 16228 chr2 120245648 120245653 + 0 NA Intergenic Intergenic -7188 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 9204 chr14 64673962 64673971 + 0 NA Intergenic Intergenic -30442 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 13466 chr18 41745584 41745688 + 0 NA Intergenic Intergenic -209562 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 30000 chr9 117773110 117773180 + 0 NA Intergenic Intergenic 68970 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 13669 chr18 59918682 59918786 + 0 NA Intergenic Intergenic 18774 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 1027 chr1 64623948 64624052 + 0 NA intron (NM_001293274, intron 4 of 25) intron (NM_001293274, intron 4 of 25) 44153 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 27191 chr7 148772837 148772901 + 0 NA intron (NM_003592, intron 9 of 21) MER117|DNA|hAT-Charlie 74028 NM_003592 8454 Hs.146806 NM_003592 ENSG00000055130 CUL1 - cullin 1 protein-coding 25328 chr6 150069040 150069134 + 0 NA promoter-TSS (NM_024518) promoter-TSS (NM_024518) 60 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 17356 chr2 237966777 237966903 + 0 NA promoter-TSS (NR_037904) promoter-TSS (NR_037904) -105 NM_080678 140739 Hs.471785 NM_080678 ENSG00000184182 UBE2F NCE2 ubiquitin conjugating enzyme E2 F (putative) protein-coding 16530 chr2 159155453 159155557 + 0 NA intron (NM_033394, intron 7 of 26) intron (NM_033394, intron 7 of 26) -31330 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 423 chr1 26500667 26500773 + 0 NA Intergenic CpG 28309 NM_005517 3151 Hs.181163 NM_005517 ENSG00000198830 HMGN2 HMG17 high mobility group nucleosomal binding domain 2 protein-coding 18977 chr22 42635665 42635769 + 0 NA intron (NM_000398, intron 2 of 8) intron (NM_000398, intron 2 of 8) 4884 NM_001165877 267020 Hs.664737 NM_001165877 ENSG00000249222 ATP5L2 ATP5K2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G2 protein-coding 14076 chr19 10424422 10424541 + 0 NA intron (NM_001111307, intron 1 of 14) CpG 3824 NM_001111307 5141 Hs.89901 NM_006202 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A protein-coding 25529 chr7 945704 945824 + 0 NA promoter-TSS (NM_001284309) promoter-TSS (NM_001284309) 52 NM_001284309 11033 Hs.602573 NM_006869 ENSG00000105963 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 2757 chr1 221742149 221742305 + 0 NA promoter-TSS (NM_007207) promoter-TSS (NM_007207) -51 NM_007207 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 10982 chr16 8868702 8868778 + 0 NA promoter-TSS (NM_001278263) promoter-TSS (NM_001278263) -21 NM_001278261 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 5983 chr11 103433517 103433621 + 0 NA intron (NM_001080463, intron 85 of 89) MLT1F2|LTR|ERVL-MaLR 324138 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 18548 chr21 39388660 39388852 + 0 NA intron (NM_001146218, intron 1 of 4) CpG 990 NM_001146218 7485 Hs.198308 NM_004627 ENSG00000182093 WRB CHD5|GET1 tryptophan rich basic protein protein-coding 24104 chr6 16137286 16137390 + 0 NA intron (NM_013262, intron 2 of 6) intron (NM_013262, intron 2 of 6) -4218 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 11908 chr17 2030695 2030799 + 0 NA intron (NR_144476, intron 1 of 12) intron (NR_144476, intron 1 of 12) 635 NM_001383 1801 Hs.513856 NM_001383 ENSG00000108963 DPH1 DEDSSH|DPH2L|DPH2L1|OVCA1 diphthamide biosynthesis 1 protein-coding 7011 chr12 51371549 51371748 + 0 NA intron (NM_007210, intron 4 of 11) intron (NM_007210, intron 4 of 11) -19669 NM_001267615 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 13812 chr18 77262871 77263001 + 0 NA intron (NM_001480, intron 2 of 2) intron (NM_001480, intron 2 of 2) 12884 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 24572 chr6 42879763 42879910 + 0 NA non-coding (NR_134562, exon 1 of 7) non-coding (NR_134562, exon 1 of 7) 220 NR_134562 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 17762 chr20 22763687 22763691 + 0 NA Intergenic Intergenic -156172 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 9885 chr15 37372297 37372336 + 0 NA Intergenic Intergenic -271017 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 18630 chr22 19447508 19447702 + 0 NA intron (NM_173793, intron 1 of 2) CpG-18749 627 NM_001166242 128977 Hs.659565 NM_173793 ENSG00000242259 C22orf39 - chromosome 22 open reading frame 39 protein-coding 30997 chrX 118727525 118727636 + 0 NA promoter-TSS (NM_001560) promoter-TSS (NM_001560) -16 NM_001560 3597 Hs.496646 NM_001560 ENSG00000131724 IL13RA1 CD213A1|CT19|IL-13Ra|NR4 interleukin 13 receptor subunit alpha 1 protein-coding 30103 chr9 125189788 125189942 + 0 NA promoter-TSS (NM_001123355) promoter-TSS (NM_001123355) 74 NM_002721 5537 Hs.744091 NM_002721 ENSG00000119414 PPP6C PP6|PP6C protein phosphatase 6 catalytic subunit protein-coding 26782 chr7 106065265 106065372 + 0 NA Intergenic Intergenic 47027 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 6400 chr11 133928692 133928796 + 0 NA intron (NM_001277285, intron 12 of 19) intron (NM_001277285, intron 12 of 19) -27004 NR_024344 283174 Hs.504370 NM_001001873 ENSG00000280237 MIR4697HG LINC00947 MIR4697 host gene ncRNA 15039 chr2 12534749 12534853 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -182071 NR_027303 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 8049 chr13 30142560 30142673 + 0 NA Intergenic Intergenic 10458 NR_138041 102157400 Hs.639879 NR_138041 ENSG00000232117 LINC00384 - long intergenic non-protein coding RNA 384 ncRNA 20781 chr3 182636795 182636899 + 0 NA Intergenic Intergenic -129723 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 31080 chrX 134460129 134460294 + 0 NA promoter-TSS (NM_000194) promoter-TSS (NM_000194) 66 NM_000194 3251 Hs.412707 NM_000194 ENSG00000165704 HPRT1 HGPRT|HPRT hypoxanthine phosphoribosyltransferase 1 protein-coding 20574 chr3 162391056 162391150 + 0 NA Intergenic Intergenic 894295 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15 otolin 1 protein-coding 302 chr1 20279659 20279674 + 0 NA Intergenic L2a|LINE|L2 -11253 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 28959 chr9 19230660 19230808 + 0 NA promoter-TSS (NM_017925) promoter-TSS (NM_017925) -31 NR_073201 55667 Hs.249591 NM_017925 ENSG00000137145 DENND4C C9orf55|C9orf55B|RAB10GEF|bA513M16.3 DENN domain containing 4C protein-coding 6732 chr12 22443484 22443636 + 0 NA Intergenic MamGypLTR3|LTR|Gypsy 100986 NM_001286175 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 16517 chr2 158600320 158600507 + 0 NA intron (NM_001005476, intron 3 of 20) intron (NM_001005476, intron 3 of 20) 134589 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 14513 chr19 43951105 43951140 + 0 NA promoter-TSS (NM_001297588) promoter-TSS (NM_001297588) -101 NM_001297589 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 13201 chr18 596978 597139 + 0 NA promoter-TSS (NM_001289036) promoter-TSS (NM_001289036) 60 NM_014410 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 17353 chr2 237691953 237692026 + 0 NA promoter-TSS (NM_001137552) promoter-TSS (NM_001137552) -175 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 5400 chr11 63565040 63565186 + 0 NA Intergenic Intergenic -1730 NM_017878 54979 Hs.272805 NM_017878 ENSG00000133328 HRASLS2 PLA1/2-2 HRAS like suppressor 2 protein-coding 15259 chr2 28437550 28437699 + 0 NA Intergenic Intergenic -42952 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 11019 chr16 11497470 11497605 + 0 NA Intergenic Intergenic 32277 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 8438 chr13 90839181 90839285 + 0 NA Intergenic LTR40a|LTR|ERVL 87364 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 12564 chr17 44557160 44557278 + 0 NA promoter-TSS (NM_001466) promoter-TSS (NM_001466) -225 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 8996 chr14 51651435 51651495 + 0 NA promoter-TSS (NM_001267046) promoter-TSS (NM_001267046) 279 NR_037676 145438 Hs.645410 NR_037676 ENSG00000273888 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 23181 chr5 130528652 130528756 + 0 NA Intergenic LTR16B1|LTR|ERVL 623874 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 16041 chr2 101517421 101517641 + 0 NA Intergenic Intergenic -42828 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 15041 chr2 12665426 12665530 + 0 NA Intergenic Intergenic -51394 NR_027303 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 9346 chr14 73490908 73491023 + 0 NA promoter-TSS (NM_024644) promoter-TSS (NM_024644) 31 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 24900 chr6 88730733 88730823 + 0 NA intron (NM_001286426, intron 12 of 14) intron (NM_001286426, intron 12 of 14) -191409 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 17434 chr20 844512 844616 + 0 NA promoter-TSS (NM_031424) promoter-TSS (NM_031424) -44 NM_031424 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 7908 chr12 132243215 132243358 + 0 NA intron (NM_001122636, intron 6 of 10) intron (NM_001122636, intron 6 of 10) -32105 NR_024563 100130238 Hs.536338 NR_024563 LOC100130238 - uncharacterized LOC100130238 ncRNA 14061 chr19 9914798 9914907 + 0 NA intron (NM_058164, intron 1 of 5) (CCG)n|Simple_repeat|Simple_repeat -1147 NM_001304347 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 7418 chr12 92056005 92056109 + 0 NA intron (NR_132341, intron 1 of 4) UCON132b|DNA|hAT-Tip100 85656 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 13898 chr19 2503859 2503971 + 0 NA Intergenic Intergenic 27790 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 10547 chr15 80955895 80956079 + 0 NA intron (NR_126328, intron 1 of 2) intron (NR_126328, intron 1 of 2) 33891 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESDC2 BOCA|MESD mesoderm development candidate 2 protein-coding 8959 chr14 49868323 49868477 + 0 NA Intergenic CpG -5551 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA, 7SL, cytoplasmic 2 ncRNA 1468 chr1 109198083 109198261 + 0 NA intron (NM_001284353, intron 10 of 14) intron (NM_001284353, intron 10 of 14) 11623 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 30656 chrX 46325584 46325733 + 0 NA TTS (NR_110388) TTS (NR_110388) 2016 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 17858 chr20 32031560 32031664 + 0 NA 3' UTR (NM_080625, exon 9 of 9) 3' UTR (NM_080625, exon 9 of 9) -20576 NM_001172131 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 30182 chr9 128340524 128340574 + 0 NA promoter-TSS (NM_005094) promoter-TSS (NM_005094) -11 NM_005094 10999 Hs.656699 NM_005094 ENSG00000167114 SLC27A4 ACSVL4|FATP4|IPS solute carrier family 27 member 4 protein-coding 13562 chr18 49813808 49813953 + 0 NA promoter-TSS (NM_006111) promoter-TSS (NM_006111) 1 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 22219 chr5 10601489 10601642 + 0 NA intron (NM_001164440, intron 1 of 3) L2c|LINE|L2 37242 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 20246 chr3 138608917 138608971 + 0 NA promoter-TSS (NM_018147) promoter-TSS (NM_018147) -133 NM_018147 55179 Hs.173438 NM_018147 ENSG00000158234 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 29153 chr9 70021314 70021360 + 0 NA Intergenic Intergenic -22244 NR_125850 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 1494 chr1 110339368 110339472 + 0 NA promoter-TSS (NM_022768) promoter-TSS (NM_022768) 97 NM_022768 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 30462 chrX 7148202 7148306 + 0 NA promoter-TSS (NM_001178136) promoter-TSS (NM_001178136) -64 NM_001135565 8226 Hs.185910 NM_012080 ENSG00000130021 PUDP DXF68S1E|FAM16AX|GS1|HDHD1|HDHD1A pseudouridine 5'-phosphatase protein-coding 22853 chr5 89352143 89352247 + 0 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -448090 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 29693 chr9 99820218 99820236 + 0 NA promoter-TSS (NR_109802) promoter-TSS (NR_109802) -338 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 12529 chr17 42824337 42824360 + 0 NA promoter-TSS (NR_106839) promoter-TSS (NR_106839) -32 NM_003766 8678 Hs.716464 NM_003766 ENSG00000126581 BECN1 ATG6|VPS30|beclin1 beclin 1 protein-coding 17251 chr2 230684834 230684938 + 0 NA Intergenic L2a|LINE|L2 15643 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 10536 chr15 80436783 80436887 + 0 NA intron (NM_014862, intron 1 of 18) intron (NM_014862, intron 1 of 18) 32485 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 19277 chr3 27167043 27167147 + 0 NA intron (NM_152534, intron 30 of 38) intron (NM_152534, intron 30 of 38) 49428 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 12514 chr17 42172018 42172166 + 0 NA intron (NM_012285, intron 6 of 16) intron (NM_012285, intron 6 of 16) 9186 NM_012285 23415 Hs.304081 NM_012285 ENSG00000089558 KCNH4 BEC2|ELK1|Kv12.3 potassium voltage-gated channel subfamily H member 4 protein-coding 1906 chr1 159959608 159959712 + 0 NA Intergenic LTR78|LTR|ERV1 -1564 NR_038849 100505633 Hs.445045 NR_038849 ENSG00000224259 LINC01133 - long intergenic non-protein coding RNA 1133 ncRNA 21542 chr4 85498478 85498582 + 0 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 23399 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 13101 chr17 80260355 80260459 + 0 NA promoter-TSS (NM_020954) promoter-TSS (NM_020954) -454 NM_001256071 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 9245 chr14 67312012 67312136 + 0 NA intron (NM_022474, intron 8 of 14) intron (NM_022474, intron 8 of 14) 47929 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 8042 chr13 29733513 29733617 + 0 NA Intergenic L2b|LINE|L2 85872 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 27919 chr8 60997607 60997717 + 0 NA Intergenic Intergenic -29914 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 17186 chr2 224678568 224678671 + 0 NA Intergenic Intergenic -93222 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 15044 chr2 12716781 12716872 + 0 NA promoter-TSS (NM_021643) promoter-TSS (NM_021643) -46 NR_027303 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 3235 chr10 5659992 5660096 + 0 NA intron (NR_037164, intron 1 of 6) intron (NR_037164, intron 1 of 6) 6551 NR_037164 79754 Hs.445899 NM_024701 ENSG00000196372 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 16909 chr2 200662799 200662953 + 0 NA exon (NM_001159, exon 31 of 35) exon (NM_001159, exon 31 of 35) -32847 NR_135011 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough pseudo 27310 chr8 731199 731354 + 0 NA promoter-TSS (NM_001303100) promoter-TSS (NM_001303100) -37 NM_207332 157697 Hs.655310 NM_207332 ENSG00000104714 ERICH1 HSPC319 glutamate rich 1 protein-coding 21121 chr4 2536295 2536461 + 0 NA Intergenic CpG 66925 NM_001185009 6047 Hs.66394 NM_002938 ENSG00000063978 RNF4 RES4-26|SLX5|SNURF ring finger protein 4 protein-coding 8787 chr14 30559039 30559163 + 0 NA promoter-TSS (NM_017769) promoter-TSS (NM_017769) -22 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 4435 chr10 117375441 117375558 + 0 NA promoter-TSS (NM_173791) promoter-TSS (NM_173791) -32 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 20475 chr3 156535350 156535454 + 0 NA intron (NM_003471, intron 13 of 13) intron (NM_003471, intron 13 of 13) 18723 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 2327 chr1 198937440 198937544 + 0 NA promoter-TSS (NR_040073) promoter-TSS (NR_040073) -63 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 11643 chr16 75199459 75199594 + 0 NA Intergenic Intergenic 7648 NM_001025200 440387 Hs.610926 NM_001025200 ENSG00000168928 CTRB2 - chymotrypsinogen B2 protein-coding 7286 chr12 76236738 76236921 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR 111613 NM_024685 79738 Hs.96322 NM_024685 ENSG00000179941 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 9172 chr14 63045415 63045467 + 0 NA promoter-TSS (NM_139318) promoter-TSS (NM_139318) -203 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 6152 chr11 118252203 118252388 + 0 NA promoter-TSS (NM_001286152) promoter-TSS (NM_001286152) 73 NR_104404 196264 Hs.15396 NM_198275 ENSG00000160588 MPZL3 - myelin protein zero like 3 protein-coding 13769 chr18 73615012 73615116 + 0 NA Intergenic Intergenic 290123 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LOC100505817 - uncharacterized LOC100505817 ncRNA 11579 chr16 70568807 70568911 + 0 NA intron (NM_012426, intron 22 of 25) intron (NM_012426, intron 22 of 25) -11036 NM_001172771 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 6977 chr12 49741361 49741526 + 0 NA promoter-TSS (NM_003217) promoter-TSS (NM_003217) -67 NM_003217 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 22603 chr5 61162422 61162584 + 0 NA promoter-TSS (NM_001048249) promoter-TSS (NM_001048249) -28 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 21285 chr4 37441781 37441872 + 0 NA intron (NM_001144990, intron 6 of 6) intron (NM_001144990, intron 6 of 6) -12104 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 705 chr1 40868371 40868480 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -6079 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 29953 chr9 115262512 115262682 + 0 NA intron (NM_017418, intron 2 of 7) intron (NM_017418, intron 2 of 7) 120779 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 4763 chr11 7597830 7597990 + 0 NA intron (NM_001256568, intron 2 of 20) intron (NM_001256568, intron 2 of 20) 724 NM_001256568 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 1720 chr1 151611863 151612023 + 0 NA promoter-TSS (NM_030918) promoter-TSS (NM_030918) -243 NM_001330723 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin family member 27 protein-coding 19538 chr3 52053713 52053860 + 0 NA intron (NM_001947, intron 2 of 2) intron (NM_001947, intron 2 of 2) 2659 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 15074 chr2 15591739 15591942 + 0 NA 5' UTR (NM_004939, exon 1 of 26) 5' UTR (NM_004939, exon 1 of 26) 219 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 4471 chr10 119178738 119178890 + 0 NA promoter-TSS (NR_126106) promoter-TSS (NR_126106) 51 NR_126106 10935 Hs.523302 NM_006793 ENSG00000165672 PRDX3 AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III peroxiredoxin 3 protein-coding 13451 chr18 36398547 36398651 + 0 NA intron (NM_025135, intron 3 of 24) intron (NM_025135, intron 3 of 24) 100903 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 24084 chr6 14144712 14144878 + 0 NA Intergenic Intergenic 27161 NM_004233 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 16965 chr2 205775620 205775724 + 0 NA intron (NM_201266, intron 15 of 16) intron (NM_201266, intron 15 of 16) 93172 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 16157 chr2 112764593 112764697 + 0 NA promoter-TSS (NM_001304361) promoter-TSS (NM_001304361) 32 NR_130712 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 13936 chr19 3762961 3763108 + 0 NA intron (NM_172251, intron 1 of 2) CpG 367 NM_172251 116541 Hs.356578 NM_172251 ENSG00000183617 MRPL54 L54mt|MRP-L54 mitochondrial ribosomal protein L54 protein-coding 12176 chr17 17972578 17972687 + 0 NA promoter-TSS (NM_001033551) promoter-TSS (NM_001033551) -162 NM_001288789 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 8678 chr14 21024967 21025071 + 0 NA promoter-TSS (NM_001282214) promoter-TSS (NM_001282214) 7 NM_001282214 57447 Hs.525205 NM_016250 ENSG00000165795 NDRG2 SYLD NDRG family member 2 protein-coding 1432 chr1 106755913 106756017 + 0 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -300680 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 24733 chr6 56220269 56220307 + 0 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 27292 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 1930 chr1 161153876 161153983 + 0 NA 5' UTR (NM_016406, exon 1 of 6) 5' UTR (NM_016406, exon 1 of 6) 185 NM_016406 51506 Hs.301412 NM_016406 ENSG00000143222 UFC1 HSPC155 ubiquitin-fold modifier conjugating enzyme 1 protein-coding 8930 chr14 44897086 44897251 + 0 NA promoter-TSS (NM_001017923) promoter-TSS (NM_001017923) -136 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 10385 chr15 70825217 70825295 + 0 NA Intergenic Intergenic -27983 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 12980 chr17 74760111 74760238 + 0 NA intron (NM_004252, intron 1 of 5) intron (NM_004252, intron 1 of 5) 11561 NR_037409 100500847 NR_037409 ENSG00000109062 MIR3615 mir-3615 microRNA 3615 ncRNA 11700 chr16 80105297 80105401 + 0 NA Intergenic Intergenic 310100 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 5851 chr11 93197476 93197616 + 0 NA promoter-TSS (NM_001286139) promoter-TSS (NM_001286139) -91 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 20819 chr3 184363123 184363237 + 0 NA 5' UTR (NM_001278714, exon 1 of 4) 5' UTR (NM_001278714, exon 1 of 4) 197 NM_001278714 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 8739 chr14 23589118 23589295 + 0 NA Intergenic Intergenic -10406 NM_032452 84502 Hs.597841 NM_032452 ENSG00000092051 JPH4 JP4|JPHL1 junctophilin 4 protein-coding 2051 chr1 169539081 169539161 + 0 NA intron (NM_000130, intron 13 of 24) intron (NM_000130, intron 13 of 24) 47410 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 30515 chrX 15335629 15335733 + 0 NA promoter-TSS (NM_020473) promoter-TSS (NM_020473) -127 NR_033836 5277 Hs.137154 NM_002641 ENSG00000165195 PIGA GPI3|MCAHS2|PIG-A|PNH1 phosphatidylinositol glycan anchor biosynthesis class A protein-coding 27557 chr8 24940108 24940212 + 0 NA Intergenic MER72B|LTR|ERV1 13707 NR_106900 102465506 NR_106900 ENSG00000283327 MIR6841 hsa-mir-6841 microRNA 6841 ncRNA 25769 chr7 17940598 17940647 + 0 NA promoter-TSS (NM_015132) promoter-TSS (NM_015132) -114 NM_015132 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 22149 chr5 1523983 1524069 + 0 NA promoter-TSS (NM_024830) promoter-TSS (NM_024830) -49 NM_024830 79888 Hs.368853 NM_024830 ENSG00000153395 LPCAT1 AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT lysophosphatidylcholine acyltransferase 1 protein-coding 20626 chr3 170244687 170244791 + 0 NA intron (NM_002740, intron 2 of 17) LTR49|LTR|ERV1 22307 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 12987 chr17 75012609 75012729 + 0 NA promoter-TSS (NM_001303265) promoter-TSS (NM_001303265) 5 NM_001303265 3396 Hs.407955 NM_001545 ENSG00000167862 MRPL58 DS-1|DS1|ICT1|MRP-L58 mitochondrial ribosomal protein L58 protein-coding 5382 chr11 62727432 62727666 + 0 NA promoter-TSS (NM_001079559) promoter-TSS (NM_001079559) -164 NM_001079559 221092 Hs.657058 NM_001079559 ENSG00000214753 HNRNPUL2 HNRPUL2|SAF-A2 heterogeneous nuclear ribonucleoprotein U like 2 protein-coding 4968 chr11 19028312 19028460 + 0 NA Intergenic MER54A|LTR|ERVL 31631 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 24003 chr6 9852120 9852224 + 0 NA Intergenic L1PA15-16|LINE|L1 -560146 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 8034 chr13 29436405 29436509 + 0 NA intron (NM_015233, intron 1 of 8) MIRb|SINE|MIR 7817 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated tumor suppressor candidate 2 protein-coding 15142 chr2 20217697 20217801 + 0 NA intron (NM_001006946, intron 2 of 5) intron (NM_001006946, intron 2 of 5) 7417 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 10502 chr15 78507380 78507416 + 0 NA promoter-TSS (NM_001013619) promoter-TSS (NM_001013619) -166 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 6089 chr11 112164043 112164174 + 0 NA promoter-TSS (NM_001243211) promoter-TSS (NM_001243211) 9 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 14975 chr2 9752667 9752771 + 0 NA Intergenic L2a|LINE|L2 -90723 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 16033 chr2 101327936 101328021 + 0 NA Intergenic Intergenic 18528 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 4425 chr10 116849397 116849548 + 0 NA promoter-TSS (NM_001242699) promoter-TSS (NM_001242699) -40 NM_001242699 387712 Hs.693248 NM_001242699 ENSG00000188316 ENO4 C10orf134 enolase family member 4 protein-coding 22061 chr4 180827772 180827896 + 0 NA Intergenic Intergenic 331315 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 5249 chr11 47416245 47416254 + 0 NA 3' UTR (NM_001128225, exon 10 of 10) 3' UTR (NM_001128225, exon 10 of 10) 7749 NM_001330245 91252 Hs.523664 NM_152264 ENSG00000165915 SLC39A13 LZT-Hs9 solute carrier family 39 member 13 protein-coding 22516 chr5 53028154 53028234 + 0 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 38868 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 12723 chr17 55433280 55433358 + 0 NA Intergenic Intergenic -11339 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 24804 chr6 75601812 75601818 + 0 NA 5' UTR (NM_001304792, exon 1 of 15) 5' UTR (NM_001304792, exon 1 of 15) 306 NM_001100409 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO1/sentrin specific peptidase 6 protein-coding 11481 chr16 66751707 66751722 + 0 NA promoter-TSS (NR_133569) promoter-TSS (NR_133569) -38 NR_133569 106699570 Hs.513658 NR_133569 ENSG00000246777 LOC106699570 - uncharacterized LOC106699570 ncRNA 21757 chr4 121697086 121697213 + 0 NA promoter-TSS (NM_001154) promoter-TSS (NM_001154) -157 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 17114 chr2 219206644 219206769 + 0 NA promoter-TSS (NM_001270998) promoter-TSS (NM_001270998) -78 NM_138802 130617 Hs.534540 NM_138802 ENSG00000158552 ZFAND2B AIRAPL zinc finger AN1-type containing 2B protein-coding 22189 chr5 7904339 7904436 + 0 NA Intergenic L1MC3|LINE|L1 35283 NR_134481 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 2742 chr1 220680234 220680338 + 0 NA Intergenic Intergenic -10000 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 5909 chr11 95790363 95790477 + 0 NA promoter-TSS (NM_144664) promoter-TSS (NM_144664) -41 NM_001243776 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 14524 chr19 44448421 44448564 + 0 NA promoter-TSS (NM_014518) promoter-TSS (NM_014518) -15 NM_014518 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 2084 chr1 174153701 174153827 + 0 NA intron (NR_121197, intron 3 of 3) L1ME1|LINE|L1 5523 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 LOC102724601 - uncharacterized LOC102724601 ncRNA 2473 chr1 205122247 205122411 + 0 NA promoter-TSS (NM_005057) promoter-TSS (NM_005057) -307 NM_001193272 5929 Hs.519230 NM_005057 ENSG00000117222 RBBP5 RBQ3|SWD1 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding 10875 chr16 2015518 2015624 + 0 NA Intergenic AluJb|SINE|Alu -3949 NM_001099456 283869 Hs.233533 NM_001099456 ENSG00000183971 NPW L8|L8C|PPL8|PPNPW neuropeptide W protein-coding 30860 chrX 82813817 82813921 + 0 NA Intergenic Intergenic -694392 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 29505 chr9 90025951 90026064 + 0 NA non-coding (NR_038882, exon 3 of 4) non-coding (NR_038882, exon 3 of 4) -2472 NR_036253 100422963 NR_036253 ENSG00000263967 MIR4290 - microRNA 4290 ncRNA 22438 chr5 40689581 40689731 + 0 NA intron (NM_000958, intron 2 of 2) intron (NM_000958, intron 2 of 2) 9726 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 22921 chr5 96629915 96630057 + 0 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -32051 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 13195 chr17_KI270730v1_random 33534 33684 + 0 NA NA Intergenic NA NA 2921 chr1 230067068 230067220 + 0 NA promoter-TSS (NR_120373) promoter-TSS (NR_120373) -51 NR_120373 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 4726 chr11 4608202 4608360 + 0 NA promoter-TSS (NM_001304496) promoter-TSS (NM_001304496) -22 NM_001304496 55128 Hs.523438 NM_018073 ENSG00000167333 TRIM68 GC109|RNF137|SS-56|SS56 tripartite motif containing 68 protein-coding 15124 chr2 19541161 19541265 + 0 NA Intergenic Intergenic -182602 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transciption factor 1 protein-coding 435 chr1 26863047 26863151 + 0 NA promoter-TSS (NM_006142) promoter-TSS (NM_006142) -43 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 27066 chr7 135803251 135803355 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -54457 NM_205855 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 28895 chr9 4792825 4792929 + 0 NA promoter-TSS (NM_001286699) promoter-TSS (NM_001286699) 43 NM_001286699 10171 Hs.194121 NM_005772 ENSG00000120158 RCL1 RNAC|RPCL1 RNA terminal phosphate cyclase like 1 protein-coding 10652 chr15 88918930 88919034 + 0 NA Intergenic L2b|LINE|L2 -5513 NM_001310320 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 16145 chr2 112276088 112276217 + 0 NA intron (NM_198581, intron 1 of 11) CpG 551 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 8903 chr14 37452482 37452586 + 0 NA intron (NM_001195296, intron 13 of 14) intron (NM_001195296, intron 13 of 14) 142586 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 1412 chr1 100896014 100896134 + 0 NA promoter-TSS (NM_001144884) promoter-TSS (NM_001144884) -2 NM_001144884 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 14527 chr19 44671607 44671838 + 0 NA 5' UTR (NM_001127893, exon 1 of 8) 5' UTR (NM_001127893, exon 1 of 8) 270 NM_001127893 56971 Hs.416925 NM_020219 ENSG00000186567 CEACAM19 CEACM19|CEAL1 carcinoembryonic antigen related cell adhesion molecule 19 protein-coding 11985 chr17 5260736 5260840 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -21475 NM_001083585 9135 Hs.584784 NM_004703 ENSG00000029725 RABEP1 RAB5EP|RABPT5 rabaptin, RAB GTPase binding effector protein 1 protein-coding 27680 chr8 37144855 37145032 + 0 NA Intergenic Intergenic 348970 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 18627 chr22 19122571 19122675 + 0 NA promoter-TSS (NM_001184781) promoter-TSS (NM_001184781) -169 NM_001184781 9993 Hs.517357 NM_005137 ENSG00000070413 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 13951 chr19 4457853 4457984 + 0 NA promoter-TSS (NM_025241) promoter-TSS (NM_025241) -124 NM_025241 80700 Hs.435255 NM_025241 ENSG00000167671 UBXN6 UBXD1|UBXDC2 UBX domain protein 6 protein-coding 19596 chr3 58306445 58306549 + 0 NA non-coding (NR_049755, exon 1 of 5) non-coding (NR_049755, exon 1 of 5) 252 NR_049757 11102 Hs.446320 NM_007042 ENSG00000163684 RPP14 HsHTD2|P14 ribonuclease P/MRP subunit p14 protein-coding 7772 chr12 121352425 121352566 + 0 NA promoter-TSS (NM_016237) promoter-TSS (NM_016237) -33 NM_001330489 51433 Hs.7101 NM_016237 ENSG00000089053 ANAPC5 APC5 anaphase promoting complex subunit 5 protein-coding 28449 chr8 115576498 115576602 + 0 NA intron (NM_001282902, intron 4 of 5) MIRc|SINE|MIR 91462 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 829 chr1 46719215 46719361 + 0 NA promoter-TSS (NM_014774) promoter-TSS (NM_014774) -224 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 11607 chr16 72877513 72877662 + 0 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) 170788 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 9502 chr14 87870049 87870153 + 0 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 123170 NM_001201401 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 26475 chr7 77990135 77990239 + 0 NA Intergenic L1PBa1|LINE|L1 150057 NM_001127357 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 30445 chrX 2691091 2691195 + 0 NA promoter-TSS (NM_002414) promoter-TSS (NM_002414) 10 NM_001321370 4267 Hs.653349 NM_002414 ENSG00000002586 CD99 HBA71|MIC2|MIC2X|MIC2Y|MSK5X CD99 molecule protein-coding 28660 chr8 128388872 128388976 + 0 NA Intergenic Intergenic 175755 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 20272 chr3 140270500 140270604 + 0 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 238237 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 26024 chr7 33979946 33980020 + 0 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 75072 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 15525 chr2 48531287 48531300 + 0 NA intron (NM_001198595, intron 2 of 4) intron (NM_001198595, intron 2 of 4) 1124 NM_006873 11037 Hs.44385 NM_006873 ENSG00000243244 STON1 SALF|SBLF|STN1|STNB1 stonin 1 protein-coding 1862 chr1 156747037 156747165 + 0 NA intron (NR_135008, intron 1 of 6) intron (NR_135008, intron 1 of 6) 4192 NM_001319188 3068 Hs.743948 NM_004494 ENSG00000143321 HDGF HMG1L2 hepatoma-derived growth factor protein-coding 16664 chr2 172442212 172442334 + 0 NA intron (NM_001079818, intron 1 of 24) intron (NM_001079818, intron 1 of 24) 14718 NM_001079818 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 22043 chr4 176436678 176436768 + 0 NA Intergenic Intergenic 116784 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 12651 chr17 49789104 49789249 + 0 NA intron (NM_001346706, intron 1 of 13) CpG 557 NM_001346706 11143 Hs.21907 NM_007067 ENSG00000136504 KAT7 HBO1|HBOA|MYST2|ZC2HC7 lysine acetyltransferase 7 protein-coding 13543 chr18 48997308 48997317 + 0 NA Intergenic Intergenic -46601 NM_001190821 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 9383 chr14 75063995 75064141 + 0 NA promoter-TSS (NR_126393) promoter-TSS (NR_126393) -19 NR_126395 97 Hs.18573 NM_001107 ENSG00000119640 ACYP1 ACYPE acylphosphatase 1 protein-coding 9047 chr14 55051426 55051550 + 0 NA promoter-TSS (NM_144578) promoter-TSS (NM_144578) -156 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 1082 chr1 67832224 67832367 + 0 NA promoter-TSS (NR_040077) promoter-TSS (NR_040077) 7 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12 antisense RNA 1 ncRNA 121 chr1 8873737 8873877 + 0 NA intron (NM_001428, intron 2 of 11) intron (NM_001428, intron 2 of 11) -2231 NM_001201483 2023 Hs.517145 NM_001428 ENSG00000074800 ENO1 ENO1L1|HEL-S-17|MPB1|NNE|PPH enolase 1 protein-coding 28291 chr8 100212933 100213037 + 0 NA intron (NM_003114, intron 10 of 18) CpG 54650 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 22180 chr5 6633328 6633414 + 0 NA promoter-TSS (NR_136739) promoter-TSS (NR_136739) -11 NR_037947 54888 Hs.481526 NM_017755 ENSG00000037474 NSUN2 MISU|MRT5|SAKI|TRM4 NOP2/Sun RNA methyltransferase family member 2 protein-coding 9179 chr14 63438116 63438269 + 0 NA intron (NR_104104, intron 2 of 12) intron (NR_104104, intron 2 of 12) 70046 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E - protein phosphatase 2 regulatory subunit B'epsilon protein-coding 14681 chr19 49272299 49272472 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 36483 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 26035 chr7 34814323 34814460 + 0 NA intron (NM_207173, intron 4 of 8) L1PA6|LINE|L1 19940 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 3175 chr10 1059925 1060029 + 0 NA intron (NM_014023, intron 1 of 13) AluSx|SINE|Alu 3141 NM_014023 22884 Hs.188495 NM_014023 ENSG00000047056 WDR37 - WD repeat domain 37 protein-coding 10514 chr15 78997043 78997147 + 0 NA intron (NM_002891, intron 20 of 27) MIRb|SINE|MIR 8565 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 3081 chr1 241702578 241702682 + 0 NA intron (NM_144625, intron 7 of 26) MER58B|DNA|hAT-Charlie 50352 NM_144625 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 24259 chr6 27548557 27548661 + 0 NA Intergenic Intergenic -75491 NR_144687 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 25628 chr7 6399068 6399198 + 0 NA intron (NM_018890, intron 4 of 6) intron (NM_018890, intron 4 of 6) 24638 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|Rac-1|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding 24349 chr6 30884005 30884149 + 0 NA promoter-TSS (NM_013993).3 promoter-TSS (NM_013993).3 -7 NM_001954 780 Hs.631988 NM_001954 ENSG00000204580 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13223 chr18 3305419 3305573 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger 42777 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 4792 chr11 9363457 9363581 + 0 NA Intergenic Intergenic -21103 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 17955 chr20 36862089 36862214 + 0 NA intron (NM_080627, intron 1 of 14) intron (NM_080627, intron 1 of 14) 1533 NM_080627 140710 Hs.460807 NM_080627 ENSG00000149639 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 3099 chr1 243850321 243850480 + 0 NA Intergenic CpG -6816 NM_001206729 10000 Hs.498292 NM_005465 ENSG00000117020 AKT3 MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 AKT serine/threonine kinase 3 protein-coding 27349 chr8 8310634 8310683 + 0 NA Intergenic Intergenic 71176 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related kinase activating pseudokinase 1 protein-coding 26483 chr7 79692068 79692172 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR 238160 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 5115 chr11 33557434 33557538 + 0 NA intron (NM_012194, intron 5 of 19) intron (NM_012194, intron 5 of 19) 15155 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 16499 chr2 156666489 156666591 + 0 NA Intergenic MER74A|LTR|ERVL 230152 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 3760 chr10 62380152 62380256 + 0 NA intron (NM_199451, intron 2 of 7) Tigger2a|DNA|TcMar-Tigger -5077 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 30503 chrX 13488181 13488285 + 0 NA Intergenic Intergenic -81342 NM_001167890 25975 Hs.12844 NM_015507 ENSG00000198759 EGFL6 MAEG|W80 EGF like domain multiple 6 protein-coding 21847 chr4 142550143 142550297 + 0 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 296315 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 17272 chr2 231642724 231642882 + 0 NA Intergenic Intergenic 49939 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 2278 chr1 193105463 193105472 + 0 NA promoter-TSS (NM_197962) promoter-TSS (NM_197962) 11 NM_197962 51022 Hs.458283 NM_016066 ENSG00000023572 GLRX2 CGI-133|GRX2 glutaredoxin 2 protein-coding 17499 chr20 4041910 4042069 + 0 NA Intergenic Intergenic -26398 NM_001321749 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 4152 chr10 97334962 97335116 + 0 NA promoter-TSS (NM_012083) promoter-TSS (NM_012083) -338 NM_012083 23401 Hs.140720 NM_012083 ENSG00000181274 FRAT2 - FRAT2, WNT signaling pathway regulator protein-coding 27755 chr8 42720474 42720635 + 0 NA intron (NM_000749, intron 3 of 5) L2c|LINE|L2 23135 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 9945 chr15 40871911 40872073 + 0 NA TTS (NM_133639) TTS (NM_133639) 2297 NM_133639 171177 Hs.447901 NM_133639 ENSG00000104140 RHOV ARHV|CHP|WRCH2 ras homolog family member V protein-coding 19828 chr3 108006382 108006505 + 0 NA Intergenic Intergenic 84645 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 18694 chr22 24247675 24247779 + 0 NA Intergenic Intergenic -2585 NM_001099782 2687 Hs.437156 NM_004121 ENSG00000099998 GGT5 GGL|GGT 5|GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 4639 chr10 132572026 132572192 + 0 NA intron (NM_005539, intron 1 of 15) intron (NM_005539, intron 1 of 15) 34330 NM_005539 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 17669 chr20 15992681 15992785 + 0 NA intron (NM_001033087, intron 11 of 13) intron (NM_001033087, intron 11 of 13) -6851 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 25474 chr6 166627516 166627670 + 0 NA promoter-TSS (NM_021135) promoter-TSS (NM_021135) -316 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 6413 chr11 134331880 134331984 + 0 NA promoter-TSS (NM_138342) promoter-TSS (NM_138342) 58 NM_138342 89944 Hs.436178 NM_138342 ENSG00000149328 GLB1L2 MST114|MSTP114 galactosidase beta 1 like 2 protein-coding 30559 chrX 22221104 22221208 + 0 NA intron (NM_001282754, intron 17 of 20) intron (NM_001282754, intron 17 of 20) -48173 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 17616 chr20 11850429 11850533 + 0 NA intron (NR_110635, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR 20234 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 11022 chr16 11636544 11636597 + 0 NA Intergenic LTR9A1|LTR|ERV1 -31863 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 5407 chr11 63802986 63803135 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -10314 NM_138471 144097 Hs.502793 NM_138471 ENSG00000168005 C11orf84 - chromosome 11 open reading frame 84 protein-coding 22949 chr5 98929686 98929720 + 0 NA non-coding (NR_036530, exon 1 of 1) non-coding (NR_036530, exon 1 of 1) 569 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA 7757 chr12 120534267 120534413 + 0 NA promoter-TSS (NM_014868) promoter-TSS (NM_014868) 10 NM_001330474 9921 Hs.442798 NM_014868 ENSG00000022840 RNF10 RIE2 ring finger protein 10 protein-coding 26381 chr7 70710314 70710499 + 0 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -422131 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 25916 chr7 27066316 27066470 + 0 NA Intergenic Charlie13a|DNA|hAT-Charlie 29613 NM_005522 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 14988 chr2 10122575 10122737 + 0 NA promoter-TSS (NM_001034) promoter-TSS (NM_001034) -80 NM_001034 6241 Hs.226390 NM_001034 ENSG00000171848 RRM2 R2|RR2|RR2M ribonucleotide reductase regulatory subunit M2 protein-coding 4246 chr10 102226195 102226299 + 0 NA promoter-TSS (NM_152310) promoter-TSS (NM_152310) -31 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 7386 chr12 89117448 89117638 + 0 NA Intergenic Intergenic -97851 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 19859 chr3 111582205 111582309 + 0 NA intron (NR_134917, intron 4 of 14) intron (NR_134917, intron 4 of 14) 13078 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 18622 chr22 18077855 18077995 + 0 NA promoter-TSS (NM_001199319) promoter-TSS (NM_001199319) 5 NM_001199319 55670 Hs.517400 NM_017929 ENSG00000215193 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 9577 chr14 92926550 92926649 + 0 NA intron (NM_001301690, intron 2 of 6) intron (NM_001301690, intron 2 of 6) 3499 NM_001275 1113 Hs.150793 NM_001275 ENSG00000100604 CHGA CGA chromogranin A protein-coding 7036 chr12 52860184 52860316 + 0 NA Intergenic Intergenic -11256 NM_173352 196374 Hs.665267 NM_173352 ENSG00000170423 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 11201 chr16 29944084 29944179 + 0 NA Intergenic L2c|LINE|L2 -17899 NR_110933 253980 Hs.534590 NM_178863 ENSG00000174943 KCTD13 BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1 potassium channel tetramerization domain containing 13 protein-coding 7931 chr13 19845929 19846033 + 0 NA intron (NM_001039650, intron 4 of 5) MER21C|LTR|ERVL 17655 NM_001142684 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 12193 chr17 19237552 19237615 + 0 NA intron (NM_001102664, intron 1 of 7) CpG 206 NM_001102664 22905 Hs.743983 NM_014964 ENSG00000072134 EPN2 EHB21 epsin 2 protein-coding 17517 chr20 5078615 5078741 + 0 NA intron (NM_001330987, intron 3 of 3) MLT1I|LTR|ERVL-MaLR 34409 NM_001330986 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 6214 chr11 120710590 120710630 + 0 NA intron (NM_001282470, intron 2 of 19) intron (NM_001282470, intron 2 of 19) 108505 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 6185 chr11 119067582 119067756 + 0 NA promoter-TSS (NM_001290185) promoter-TSS (NM_001290185) -83 NM_001290185 55823 Hs.234282 NM_021729 ENSG00000160695 VPS11 END1|HLD12|PEP5|RNF108|hVPS11 VPS11, CORVET/HOPS core subunit protein-coding 30920 chrX 106300476 106300580 + 0 NA Intergenic MER77|LTR|ERVL 132223 NM_152423 139221 Hs.592221 NM_152423 ENSG00000157502 MUM1L1 - MUM1 like 1 protein-coding 4532 chr10 122294099 122294271 + 0 NA intron (NM_144587, intron 7 of 15) intron (NM_144587, intron 7 of 15) 22889 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 13800 chr18 76806444 76806575 + 0 NA intron (NR_040024, intron 2 of 2) intron (NR_040024, intron 2 of 2) 15786 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 LOC100131655 - uncharacterized LOC100131655 ncRNA 4346 chr10 110530463 110530554 + 0 NA Intergenic CpG 32641 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 19585 chr3 57693004 57693106 + 0 NA promoter-TSS (NR_135550) promoter-TSS (NR_135550) 34 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 23960 chr6 7201078 7201182 + 0 NA intron (NM_001003700, intron 6 of 11) intron (NM_001003700, intron 6 of 11) 93277 NM_001003699 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 17230 chr2 228048909 228049013 + 0 NA intron (NM_001142644, intron 3 of 11) Tigger3d|DNA|TcMar-Tigger 132684 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 15091 chr2 17300227 17300401 + 0 NA Intergenic Intergenic 218125 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 7170 chr12 57795467 57795640 + 0 NA intron (NM_001172697, intron 5 of 5) MIRb|SINE|MIR 12808 NM_001172697 10102 Hs.632704 NM_005726 ENSG00000123297 TSFM EFTS|EFTSMT Ts translation elongation factor, mitochondrial protein-coding 25490 chr6 169070709 169070794 + 0 NA Intergenic Intergenic 2965 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 26136 chr7 42493659 42493763 + 0 NA Intergenic Intergenic 212736 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 13983 chr19 5720128 5720157 + 0 NA promoter-TSS (NM_001276479) promoter-TSS (NM_001276479) 23 NR_076392 9361 Hs.350265 NM_004793 ENSG00000196365 LONP1 CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON lon peptidase 1, mitochondrial protein-coding 27651 chr8 30723167 30723174 + 0 NA intron (NM_000637, intron 1 of 12) intron (NM_000637, intron 1 of 12) 4799 NM_001195104 2936 Hs.271510 NM_000637 ENSG00000104687 GSR HEL-75|HEL-S-122m glutathione-disulfide reductase protein-coding 8166 chr13 41194548 41194607 + 0 NA promoter-TSS (NM_032138) promoter-TSS (NM_032138) -2 NM_032138 84078 Hs.63841 NM_032138 ENSG00000120696 KBTBD7 - kelch repeat and BTB domain containing 7 protein-coding 13458 chr18 37299560 37299691 + 0 NA intron (NM_001025089, intron 3 of 11) intron (NM_001025089, intron 3 of 11) 25165 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 27592 chr8 27311400 27311544 + 0 NA promoter-TSS (NM_173174) promoter-TSS (NM_173174) -10 NM_173174 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 25619 chr7 6104688 6104843 + 0 NA promoter-TSS (NM_032172) promoter-TSS (NM_032172) -154 NM_032172 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 25321 chr6 149900664 149900723 + 0 NA intron (NR_045127, intron 2 of 2) intron (NR_045127, intron 2 of 2) -4634 NM_001243328 135250 Hs.511818 NM_139165 ENSG00000164520 RAET1E LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7 retinoic acid early transcript 1E protein-coding 5398 chr11 63262005 63262099 + 0 NA Intergenic L1PA4|LINE|L1 -27895 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 2574 chr1 209806148 209806233 + 0 NA promoter-TSS (NM_006147) promoter-TSS (NM_006147) -15 NM_006147 3664 Hs.591415 NM_006147 ENSG00000117595 IRF6 LPS|OFC6|PIT|PPS|PPS1|VWS|VWS1 interferon regulatory factor 6 protein-coding 2916 chr1 229342474 229342597 + 0 NA intron (NM_145257, intron 1 of 3) CpG 406 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 3126 chr1 244970999 244971077 + 0 NA promoter-TSS (NR_111907) promoter-TSS (NR_111907) -169 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 23394 chr5 142235621 142235677 + 0 NA Intergenic Intergenic 82673 NR_131221 100642175 Hs.684549 NR_131221 ENSG00000281881 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 1544 chr1 114282978 114283082 + 0 NA Intergenic Intergenic -129180 NM_001270805 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 1616 chr1 121184554 121184703 + 0 NA promoter-TSS (NM_001100910) promoter-TSS (NM_001100910) -310 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72 member B protein-coding 18240 chr20 52965996 52966100 + 0 NA Intergenic Intergenic -6359 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 4694 chr11 2257124 2257258 + 0 NA Intergenic Intergenic 13761 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 396 chr1 25568404 25568508 + 0 NA 3' UTR (NM_015627, exon 9 of 9) 3' UTR (NM_015627, exon 9 of 9) 24871 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 19880 chr3 112043762 112043881 + 0 NA intron (NR_026734, intron 2 of 16) intron (NR_026734, intron 2 of 16) 4203 NR_026734 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane protease, serine 7 protein-coding 27342 chr8 7355135 7355252 + 0 NA non-coding (NR_027423, exon 1 of 7) non-coding (NR_027423, exon 1 of 7) 161 NR_027423 100128890 Hs.694680 NR_027423 ENSG00000215374 FAM66B FAM66E family with sequence similarity 66 member B ncRNA 499 chr1 29239215 29239354 + 0 NA intron (NM_133178, intron 1 of 29) intron (NM_133178, intron 1 of 29) 2768 NM_001195001 10076 Hs.19718 NM_005704 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase, receptor type U protein-coding 16787 chr2 186570712 186570816 + 0 NA Intergenic AluJb|SINE|Alu -19299 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 4556 chr10 124341205 124341317 + 0 NA Intergenic Intergenic 77715 NM_001322968 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 15913 chr2 85612024 85612128 + 0 NA promoter-TSS (NM_001013649) promoter-TSS (NM_001013649) -20 NM_001013649 388969 Hs.516159 NM_001013649 ENSG00000168887 C2orf68 HCRCN81 chromosome 2 open reading frame 68 protein-coding 30045 chr9 121546059 121546201 + 0 NA Intergenic Intergenic -20972 NM_032552 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 19924 chr3 114290829 114290929 + 0 NA Intergenic Intergenic -3107 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T-cell immunoreceptor with Ig and ITIM domains protein-coding 6783 chr12 27524134 27524238 + 0 NA promoter-TSS (NM_001198916) promoter-TSS (NM_001198916) 74 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 1047 chr1 65339961 65340065 + 0 NA intron (NM_001256864, intron 1 of 18) intron (NM_001256864, intron 1 of 18) 30478 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 28173 chr8 90001342 90001446 + 0 NA promoter-TSS (NM_001330575) promoter-TSS (NM_001330575) 42 NM_001359 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 19061 chr22 50628351 50628353 + 0 NA promoter-TSS (NM_000487) promoter-TSS (NM_000487) -179 NM_001085427 410 Hs.88251 NM_000487 ENSG00000100299 ARSA MLD arylsulfatase A protein-coding 16777 chr2 183124282 183124386 + 0 NA promoter-TSS (NM_001287585) promoter-TSS (NM_001287585) -21 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 17620 chr20 11901210 11901328 + 0 NA intron (NM_001282550, intron 1 of 4) intron (NM_001282550, intron 1 of 4) 8776 NM_001282550 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 29604 chr9 95045258 95045362 + 0 NA intron (NM_001193329, intron 12 of 15) CpG -20040 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 909 chr1 54715803 54715907 + 0 NA promoter-TSS (NM_001291333) promoter-TSS (NM_001291333) 33 NM_001291333 7268 Hs.412482 NM_004623 ENSG00000243725 TTC4 - tetratricopeptide repeat domain 4 protein-coding 18507 chr21 36141640 36141792 + 0 NA non-coding (NR_038894, exon 3 of 3) non-coding (NR_038894, exon 3 of 3) 6751 NM_001236 874 Hs.154510 NM_001236 ENSG00000159231 CBR3 HEL-S-25|SDR21C2|hCBR3 carbonyl reductase 3 protein-coding 5996 chr11 105047293 105047439 + 0 NA Intergenic Intergenic -2042 NM_052889 114769 Hs.348365 NM_052889 ENSG00000204397 CARD16 COP|COP1|PSEUDO-ICE caspase recruitment domain family member 16 protein-coding 17970 chr20 37534520 37534691 + 0 NA Intergenic Intergenic -6674 NM_006698 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 bladder cancer associated protein protein-coding 17388 chr2 240434074 240434141 + 0 NA Intergenic Intergenic -1591 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 31079 chrX 134373188 134373379 + 0 NA promoter-TSS (NM_032458) promoter-TSS (NM_032458) -29 NM_032335 84295 Hs.356501 NM_032335 ENSG00000156531 PHF6 BFLS|BORJ|CENP-31 PHD finger protein 6 protein-coding 1124 chr1 73674123 73674169 + 0 NA Intergenic Intergenic 367976 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 2618 chr1 211830780 211830884 + 0 NA promoter-TSS (NM_014873) promoter-TSS (NM_014873) -60 NM_014873 9926 Hs.744851 NM_014873 ENSG00000123684 LPGAT1 FAM34A|FAM34A1|NET8 lysophosphatidylglycerol acyltransferase 1 protein-coding 20549 chr3 160566191 160566283 + 0 NA promoter-TSS (NM_002268) promoter-TSS (NM_002268) -649 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 10010 chr15 44663132 44663261 + 0 NA intron (NM_001160227, intron 1 of 37) CpG 482 NM_001160227 80208 Hs.656271 NM_025137 ENSG00000104133 SPG11 ALS5|CMT2X|KIAA1840 spastic paraplegia 11 (autosomal recessive) protein-coding 5618 chr11 71786973 71787126 + 0 NA promoter-TSS (NM_001099653) promoter-TSS (NM_001099653) -462 NM_018172 55199 Hs.567527 NM_018172 ENSG00000158483 FAM86C1 FAM86C family with sequence similarity 86 member C1 protein-coding 12161 chr17 17446283 17446367 + 0 NA Intergenic Intergenic -30661 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 11256 chr16 31052254 31052358 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR 12782 NM_001172670 79759 Hs.102928 NM_024706 ENSG00000167394 ZNF668 - zinc finger protein 668 protein-coding 7490 chr12 98345645 98345749 + 0 NA Intergenic MER61E|LTR|ERV1 111448 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 24329 chr6 30617323 30617507 + 0 NA promoter-TSS (NM_014046).5 promoter-TSS (NM_014046).5 -108 NR_072994 5514 Hs.106019 NM_002714 ENSG00000204569 PPP1R10 CAT53|FB19|PNUTS|PP1R10|R111|p99 protein phosphatase 1 regulatory subunit 10 protein-coding 450 chr1 27322091 27322254 + 0 NA promoter-TSS (NR_037576) promoter-TSS (NR_037576) 27 NR_037580 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 26429 chr7 74657458 74657562 + 0 NA promoter-TSS (NM_033000) promoter-TSS (NM_033000) -155 NM_032999 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 22644 chr5 65926413 65926517 + 0 NA promoter-TSS (NM_001253701) promoter-TSS (NM_001253701) -89 NM_001253701 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 11538 chr16 68707473 68707601 + 0 NA Intergenic Intergenic -29753 NM_001317186 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 27895 chr8 58659558 58659712 + 0 NA promoter-TSS (NM_001144772) promoter-TSS (NM_001144772) 210 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 19605 chr3 58640795 58640899 + 0 NA intron (NM_138805, intron 6 of 9) intron (NM_138805, intron 6 of 9) -13237 NM_001282714 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 19971 chr3 118863965 118864060 + 0 NA Intergenic L1MA2|LINE|L1 -53179 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 4951 chr11 18012996 18013088 + 0 NA non-coding (NR_104040, exon 1 of 12) non-coding (NR_104040, exon 1 of 12) 120 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 1405 chr1 100249843 100249987 + 0 NA promoter-TSS (NM_001918) promoter-TSS (NM_001918) -62 NM_001918 1629 Hs.709187 NM_001918 ENSG00000137992 DBT BCATE2|BCKAD-E2|BCKADE2|BCOADC-E2|E2|E2B dihydrolipoamide branched chain transacylase E2 protein-coding 11992 chr17 5516232 5516336 + 0 NA intron (NM_033007, intron 13 of 14) L3|LINE|CR1 -15285 NM_001162371 728392 Hs.104305 NM_001162371 LOC728392 - uncharacterized LOC728392 protein-coding 4442 chr10 118046780 118046782 + 0 NA promoter-TSS (NM_014904) promoter-TSS (NM_014904) -40 NR_026940 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility candidate 2 (non-protein coding) ncRNA 29893 chr9 112333720 112333872 + 0 NA promoter-TSS (NM_001244898) promoter-TSS (NM_001244898) -132 NM_001244896 9991 Hs.269988 NM_005156 ENSG00000119314 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 21271 chr4 26860697 26860801 + 0 NA promoter-TSS (NR_134673) promoter-TSS (NR_134673) 58 NM_020860 57620 Hs.744950 NM_020860 ENSG00000109689 STIM2 - stromal interaction molecule 2 protein-coding 5822 chr11 88484982 88485086 + 0 NA Intergenic L1M2b|LINE|L1 -19542 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 14471 chr19 40921184 40921332 + 0 NA Intergenic Intergenic -3007 NR_001278 1556 Hs.529117 NR_001278 ENSG00000256612 CYP2B7P CYP2B|CYP2B7|CYP2B7P1 cytochrome P450 family 2 subfamily B member 7, pseudogene pseudo 9163 chr14 61751038 61751146 + 0 NA promoter-TSS (NR_144368) promoter-TSS (NR_144368) 5 NR_144368 105370526 Hs.661638 NR_144368 LOC105370526 - uncharacterized LOC105370526 ncRNA 9641 chr14 98498371 98498600 + 0 NA Intergenic Intergenic -213128 NM_182560 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 8453 chr13 95256255 95256409 + 0 NA intron (NM_001105515, intron 1 of 20) intron (NM_001105515, intron 1 of 20) 45114 NM_005845 10257 Hs.508423 NM_005845 ENSG00000125257 ABCC4 MOAT-B|MOATB|MRP4 ATP binding cassette subfamily C member 4 protein-coding 3202 chr10 4250211 4250360 + 0 NA Intergenic Intergenic -6373 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 6550 chr12 7018568 7018700 + 0 NA promoter-TSS (NM_005768) promoter-TSS (NM_005768) -96 NM_005768 10162 Hs.655248 NM_005768 ENSG00000111684 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 356 chr1 23593701 23593805 + 0 NA Intergenic Intergenic -33581 NR_027042 259283 Hs.523369 NM_001348075 ENSG00000197880 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 2396 chr1 202034901 202035051 + 0 NA Intergenic Intergenic 24414 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 5377 chr11 62665180 62665341 + 0 NA promoter-TSS (NM_001286086) promoter-TSS (NM_001286086) -44 NM_001286086 102288414 Hs.9061 NM_001286086 ENSG00000278615 C11orf98 C11orf48 chromosome 11 open reading frame 98 protein-coding 807 chr1 45750660 45750764 + 0 NA 5' UTR (NM_005897, exon 1 of 9) 5' UTR (NM_005897, exon 1 of 9) 101 NM_001145349 3652 Hs.744252 NM_005897 ENSG00000197429 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 28112 chr8 82257935 82258039 + 0 NA Intergenic Intergenic -415701 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 21513 chr4 82798812 82798916 + 0 NA promoter-TSS (NM_001037582) promoter-TSS (NM_001037582) -7 NM_001037582 79966 Hs.379191 NM_024906 ENSG00000145284 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 15921 chr2 86106143 86106233 + 0 NA promoter-TSS (NM_015425) promoter-TSS (NM_015425) 6 NM_017952 55037 Hs.323489 NM_017952 ENSG00000132300 PTCD3 MRP-S39 pentatricopeptide repeat domain 3 protein-coding 2678 chr1 214903088 214903192 + 0 NA Intergenic MIRc|SINE|MIR -102402 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 28366 chr8 103275362 103275466 + 0 NA Intergenic L1M4a2|LINE|L1 -23019 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 21426 chr4 69750451 69750524 + 0 NA intron (NM_014465, intron 3 of 7) intron (NM_014465, intron 3 of 7) 10225 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 26255 chr7 49866394 49866498 + 0 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 91113 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 9850 chr15 34224794 34224898 + 0 NA promoter-TSS (NM_001286420) promoter-TSS (NM_001286420) -151 NM_016454 51234 Hs.250905 NM_016454 ENSG00000128463 EMC4 PIG17|TMEM85 ER membrane protein complex subunit 4 protein-coding 11678 chr16 77834037 77834127 + 0 NA intron (NM_020927, intron 3 of 8) intron (NM_020927, intron 3 of 8) 45518 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 4379 chr10 113099433 113099537 + 0 NA intron (NM_001146283, intron 5 of 12) intron (NM_001146283, intron 5 of 12) 54130 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 1050 chr1 65429987 65430009 + 0 NA exon (NM_017526, exon 3 of 4) exon (NM_017526, exon 3 of 4) 9282 NM_001198681 54741 Hs.23581 NM_017526 ENSG00000213625 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 24499 chr6 37630372 37630581 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR 67514 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 7290 chr12 76559685 76559822 + 0 NA promoter-TSS (NM_001319653) promoter-TSS (NM_001319653) 56 NM_020841 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 6928 chr12 46383389 46383509 + 0 NA promoter-TSS (NR_125377) promoter-TSS (NR_125377) -227 NR_125378 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 4054 chr10 89921485 89921671 + 0 NA intron (NR_110655, intron 3 of 3) LTR16E2|LTR|ERVL 35795 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 6162 chr11 118436397 118436414 + 0 NA promoter-TSS (NM_001197104) promoter-TSS (NM_001197104) -85 NM_001197104 4297 Hs.258855 NM_005933 ENSG00000118058 KMT2A ALL-1|CXXC7|HRX|HTRX1|MLL|MLL-AF9|MLL/GAS7|MLL1|MLL1A|TET1-MLL|TRX1|WDSTS lysine methyltransferase 2A protein-coding 27268 chr7 155666117 155666193 + 0 NA intron (NM_053043, intron 2 of 17) MLT2B1|LTR|ERVL 21646 NM_053043 155435 Hs.591815 NM_053043 ENSG00000184863 RBM33 PRR8 RNA binding motif protein 33 protein-coding 26053 chr7 36162074 36162178 + 0 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 8899 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 29180 chr9 71506951 71507055 + 0 NA Intergenic Intergenic 261881 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 27462 chr8 18615203 18615347 + 0 NA intron (NM_015310, intron 11 of 15) LTR10F|LTR|ERV1 193620 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 16951 chr2 203782346 203782450 + 0 NA Intergenic Intergenic 75923 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 15404 chr2 39779184 39779288 + 0 NA promoter-TSS (NM_001321468) promoter-TSS (NM_001321468) 40 NR_135663 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 14272 chr19 18557696 18557771 + 0 NA promoter-TSS (NM_001171948) promoter-TSS (NM_001171948) -29 NM_001171949 79036 Hs.714548 NM_024069 ENSG00000105700 KXD1 BORCS4|C19orf50|KXDL|MST096|MSTP096 KxDL motif containing 1 protein-coding 5623 chr11 72080577 72080722 + 0 NA promoter-TSS (NR_104476) promoter-TSS (NR_104476) 44 NM_001286561 4926 Hs.325978 NM_006185 ENSG00000137497 NUMA1 NMP-22|NUMA nuclear mitotic apparatus protein 1 protein-coding 2942 chr1 231357960 231358058 + 0 NA Intergenic Intergenic 20073 NM_001261462 83932 Hs.554892 NM_032018 ENSG00000010072 SPRTN C1orf124|DVC1|PRO4323|spartan SprT-like N-terminal domain protein-coding 10328 chr15 67105444 67105585 + 0 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -20202 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 454 chr1 27392446 27392600 + 0 NA promoter-TSS (NM_005281) promoter-TSS (NM_005281) -121 NM_005281 2827 Hs.66542 NM_005281 ENSG00000181773 GPR3 ACCA G protein-coupled receptor 3 protein-coding 28876 chr9 2015147 2015282 + 0 NA promoter-TSS (NM_001289397) promoter-TSS (NM_001289397) -5 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 4845 chr11 12189654 12189784 + 0 NA intron (NR_144420, intron 3 of 27) intron (NR_144420, intron 3 of 27) 26036 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 11319 chr16 49703063 49703167 + 0 NA intron (NM_015069, intron 3 of 7) intron (NM_015069, intron 3 of 7) -38884 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 8242 chr13 48037936 48038040 + 0 NA intron (NM_001304745, intron 1 of 1) CpG 421 NR_136687 55270 Hs.144407 NM_018283 ENSG00000136159 NUDT15 MTH2|NUDT15D nudix hydrolase 15 protein-coding 28285 chr8 99893656 99893760 + 0 NA 5' UTR (NM_004374, exon 1 of 4) 5' UTR (NM_004374, exon 1 of 4) 306 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 634 chr1 36386075 36386205 + 0 NA promoter-TSS (NM_001282546) promoter-TSS (NM_001282546) -213 NM_001282546 83931 Hs.471768 NM_032017 ENSG00000196182 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 28340 chr8 101492253 101492357 + 0 NA promoter-TSS (NM_024915) promoter-TSS (NM_024915) -134 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 24696 chr6 52672566 52672670 + 0 NA intron (NM_014051, intron 1 of 4) L2b|LINE|L2 1532 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 6700 chr12 17016272 17016376 + 0 NA Intergenic L1PBa|LINE|L1 27577 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 14954 chr2 9003924 9004074 + 0 NA promoter-TSS (NM_001321265) promoter-TSS (NM_001321265) -249 NR_135604 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 26338 chr7 65373744 65373867 + 0 NA promoter-TSS (NM_001287532) promoter-TSS (NM_001287532) 6 NM_007139 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 2551 chr1 209229589 209229725 + 0 NA Intergenic Intergenic -95799 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 24024 chr6 10521135 10521268 + 0 NA promoter-TSS (NM_145649) promoter-TSS (NM_145649) -134 NM_145649 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) protein-coding 19334 chr3 35322116 35322220 + 0 NA intron (NR_110817, intron 1 of 3) LTR8B|LTR|ERV1 71855 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 13721 chr18 63850142 63850272 + 0 NA Intergenic MER20|DNA|hAT-Charlie -37498 NM_002575 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 16885 chr2 197693334 197693487 + 0 NA Intergenic L1PA2|LINE|L1 -11894 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 30912 chrX 105273496 105273600 + 0 NA intron (NM_017416, intron 5 of 10) MER39B|LTR|ERV1 -52855 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 24262 chr6 27809962 27810100 + 0 NA promoter-TSS (NM_003536) promoter-TSS (NM_003536) -33 NM_003536 8357 Hs.591778 NM_003536 ENSG00000278828 HIST1H3H H3/k|H3F1K|H3FK histone cluster 1 H3 family member h protein-coding 12673 chr17 50478755 50478906 + 0 NA promoter-TSS (NM_018346) promoter-TSS (NM_018346) 30 NR_130911 55316 Hs.8033 NM_018346 ENSG00000136444 RSAD1 - radical S-adenosyl methionine domain containing 1 protein-coding 5577 chr11 68150307 68150398 + 0 NA Intergenic Intergenic -28961 NM_001277 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 27518 chr8 22693484 22693613 + 0 NA promoter-TSS (NM_004430) promoter-TSS (NM_004430) -246 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 22721 chr5 73826791 73826967 + 0 NA intron (NM_001244364, intron 1 of 27) intron (NM_001244364, intron 1 of 27) 13361 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 17083 chr2 216412303 216412420 + 0 NA promoter-TSS (NM_014140) promoter-TSS (NM_014140) -53 NM_014140 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 12610 chr17 47851067 47851221 + 0 NA promoter-TSS (NM_001258248) promoter-TSS (NM_001258248) 6 NM_001258248 80320 Hs.253603 NM_199262 ENSG00000189120 SP6 EPFN|EPIPROFIN|KLF14 Sp6 transcription factor protein-coding 23542 chr5 151500900 151501004 + 0 NA Intergenic Intergenic 21196 NR_106752 102465246 NR_106752 ENSG00000276622 MIR6499 hsa-mir-6499|mir-6499 microRNA 6499 ncRNA 12531 chr17 42964396 42964411 + 0 NA promoter-TSS (NM_001261434) promoter-TSS (NM_001261434) 95 NM_001261434 80755 Hs.317403 NM_001261434 ENSG00000266967 AARSD1 - alanyl-tRNA synthetase domain containing 1 protein-coding 21654 chr4 103754928 103755032 + 0 NA Intergenic LTR18A|LTR|ERVL -35164 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3R|NKR|TAC3RL tachykinin receptor 3 protein-coding 13421 chr18 34370939 34371043 + 0 NA Intergenic L1PB|LINE|L1 -122299 NM_032979 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 23589 chr5 155403367 155403493 + 0 NA Intergenic L1PBa|LINE|L1 389675 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 14571 chr19 45614429 45614533 + 0 NA intron (NM_001193268, intron 20 of 21) intron (NM_001193268, intron 20 of 21) -12273 NM_005282 2828 Hs.17170 NM_005282 ENSG00000177464 GPR4 - G protein-coupled receptor 4 protein-coding 5198 chr11 43644120 43644266 + 0 NA Intergenic Intergenic -36400 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 1233 chr1 86704694 86704845 + 0 NA promoter-TSS (NR_135837) promoter-TSS (NR_135837) 199 NM_001206653 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like endophilin B1 protein-coding 26988 chr7 129502372 129502514 + 0 NA promoter-TSS (NM_001195243) promoter-TSS (NM_001195243) -36 NM_001195243 100287482 Hs.178144 NM_001195243 ENSG00000240204 SMKR1 - small lysine rich protein 1 protein-coding 30099 chr9 124862039 124862168 + 0 NA promoter-TSS (NM_007209) promoter-TSS (NM_007209) -15 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding 1162 chr1 79811304 79811408 + 0 NA Intergenic Intergenic -724399 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 211 chr1 15603552 15603657 + 0 NA Intergenic CpG -13854 NM_032341 84301 Hs.718857 NM_032341 ENSG00000197312 DDI2 - DNA damage inducible 1 homolog 2 protein-coding 2831 chr1 225653326 225653410 + 0 NA promoter-TSS (NM_001008493) promoter-TSS (NM_001008493) -225 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 20996 chr3 193572570 193572674 + 0 NA Intergenic Intergenic -17500 NM_032279 84239 Hs.674423 NM_032279 ENSG00000127249 ATP13A4 - ATPase 13A4 protein-coding 13167 chr17 82384790 82384913 + 0 NA Intergenic Intergenic 10574 NM_018949 2837 Hs.192720 NM_018949 ENSG00000181408 UTS2R GPR14|UR-2-R|UTR|UTR2 urotensin 2 receptor protein-coding 29719 chr9 101486111 101486120 + 0 NA intron (NM_001303107, intron 1 of 2) CpG 655 NM_001303108 84302 Hs.388742 NM_032342 ENSG00000165152 TMEM246 C9orf125 transmembrane protein 246 protein-coding 7192 chr12 60266696 60266800 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 577411 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 3315 chr10 14537058 14537162 + 0 NA intron (NM_031453, intron 2 of 4) intron (NM_031453, intron 2 of 4) 1432 NM_001320740 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 20487 chr3 156811576 156811680 + 0 NA non-coding (NR_003284, exon 1 of 1) non-coding (NR_003284, exon 1 of 1) 393 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 5404 chr11 63671636 63671735 + 0 NA promoter-TSS (NM_015459) promoter-TSS (NM_015459) 45 NM_015459 25923 Hs.356719 NM_015459 ENSG00000184743 ATL3 HSN1F atlastin GTPase 3 protein-coding 23482 chr5 149345339 149345490 + 0 NA promoter-TSS (NM_152407) promoter-TSS (NM_152407) 0 NM_152407 134266 Hs.511816 NM_152407 ENSG00000164284 GRPEL2 Mt-GrpE#2 GrpE like 2, mitochondrial protein-coding 16630 chr2 169798836 169798940 + 0 NA promoter-TSS (NM_001294145) promoter-TSS (NM_001294145) 76 NM_003142 6741 Hs.632535 NM_003142 ENSG00000138385 SSB LARP3|La|La/SSB Sjogren syndrome antigen B protein-coding 26421 chr7 74343898 74344002 + 0 NA intron (NM_032421, intron 3 of 15) intron (NM_032421, intron 3 of 15) 54475 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 11883 chr17 973139 973300 + 0 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 6539 NM_022463 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 24520 chr6 39416883 39416987 + 0 NA intron (NM_145027, intron 15 of 22) intron (NM_145027, intron 15 of 22) 14439 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 14837 chr19 57279861 57280014 + 0 NA promoter-TSS (NM_001330622) promoter-TSS (NM_001330622) -30 NM_001330622 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 12041 chr17 7435241 7435414 + 0 NA promoter-TSS (NM_178518) promoter-TSS (NM_178518) -116 NM_178518 284114 Hs.655662 NM_178518 ENSG00000181284 TMEM102 CBAP transmembrane protein 102 protein-coding 24896 chr6 87723378 87723482 + 0 NA Intergenic Intergenic -21163 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 14720 chr19 50384324 50384326 + 0 NA promoter-TSS (NM_001256849) promoter-TSS (NM_001256849) 2 NM_001256849 5424 Hs.279413 NM_002691 ENSG00000062822 POLD1 CDC2|CRCS10|MDPL|POLD DNA polymerase delta 1, catalytic subunit protein-coding 3207 chr10 4541381 4541466 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -114733 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 14787 chr19 54628036 54628167 + 0 NA intron (NM_006669, intron 1 of 15).4 LTR10C|LTR|ERV1 -2310 NM_001081639 10859 Hs.667388 NM_006669 ENSG00000104972 LILRB1 CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB leukocyte immunoglobulin like receptor B1 protein-coding 22502 chr5 51829350 51829506 + 0 NA Intergenic Intergenic -446096 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 13302 chr18 22282627 22282752 + 0 NA Intergenic Intergenic 113252 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 30091 chr9 124734236 124734340 + 0 NA intron (NM_033334, intron 1 of 9) L2b|LINE|L2 37022 NM_001489 2649 Hs.20131 NM_001489 ENSG00000148200 NR6A1 CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR nuclear receptor subfamily 6 group A member 1 protein-coding 25443 chr6 160950655 160950744 + 0 NA Intergenic Intergenic -41028 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 23199 chr5 132103798 132103902 + 0 NA Intergenic Intergenic 30058 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 GMCSF colony stimulating factor 2 protein-coding 23914 chr6 3819447 3819594 + 0 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -29846 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 15605 chr2 58634235 58634255 + 0 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 113492 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 7023 chr12 52186123 52186227 + 0 NA intron (NM_182507, intron 1 of 8) intron (NM_182507, intron 1 of 8) 5825 NM_182507 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 966 chr1 59750784 59750888 + 0 NA intron (NM_001278224, intron 8 of 9) intron (NM_001278224, intron 8 of 9) -17540 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 30710 chrX 49166502 49166534 + 0 NA 3' UTR (NM_001099681, exon 5 of 5) 3' UTR (NM_001099681, exon 5 of 5) 3675 NM_001099681 79917 Hs.193170 NM_024859 ENSG00000269313 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 27491 chr8 20140839 20140971 + 0 NA Intergenic Intergenic 42301 NM_001135691 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 13682 chr18 61891470 61891491 + 0 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 1591 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 218 chr1 15847498 15847637 + 0 NA promoter-TSS (NM_015001) promoter-TSS (NM_015001) -297 NM_015001 23013 Hs.744843 NM_015001 ENSG00000065526 SPEN HIAA0929|MINT|RBM15C|SHARP spen family transcriptional repressor protein-coding 5918 chr11 96099056 96099102 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -174872 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 2345 chr1 200410012 200410142 + 0 NA promoter-TSS (NM_001281293) promoter-TSS (NM_001281293) -19 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 14933 chr2 3951580 3951684 + 0 NA Intergenic Intergenic 22400 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 6902 chr12 43806232 43806395 + 0 NA promoter-TSS (NM_001242397) promoter-TSS (NM_001242397) 62 NM_002822 5756 Hs.189075 NM_002822 ENSG00000151239 TWF1 A6|PTK9 twinfilin actin binding protein 1 protein-coding 14241 chr19 17309391 17309449 + 0 NA promoter-TSS (NM_024050) promoter-TSS (NM_024050) -108 NM_024050 79016 Hs.466154 NM_024050 ENSG00000130311 DDA1 C19orf58|PCIA1 DET1 and DDB1 associated 1 protein-coding 5261 chr11 56906664 56906769 + 0 NA Intergenic Intergenic 58238 NR_110136 101927120 Hs.472675 NR_110136 ENSG00000255433 LOC101927120 - uncharacterized LOC101927120 ncRNA 10244 chr15 62606522 62606626 + 0 NA Intergenic Intergenic 38607 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 2567 chr1 209576869 209576934 + 0 NA Intergenic Intergenic -6799 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 29375 chr9 83027684 83027834 + 0 NA intron (NM_152573, intron 1 of 16) intron (NM_152573, intron 1 of 16) 35369 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 4321 chr10 106577435 106577532 + 0 NA exon (NM_052918, exon 26 of 26) exon (NM_052918, exon 26 of 26) 437318 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LOC105378470 - uncharacterized LOC105378470 ncRNA 22323 chr5 21808143 21808292 + 0 NA intron (NM_001317227, intron 6 of 11) MLT1E1A|LTR|ERVL-MaLR -76237 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 15098 chr2 17540434 17540586 + 0 NA promoter-TSS (NM_003385) promoter-TSS (NM_003385) -30 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 12587 chr17 45317177 45317314 + 0 NA promoter-TSS (NM_003954) promoter-TSS (NM_003954) -181 NM_003954 9020 Hs.404183 NM_003954 ENSG00000006062 MAP3K14 FTDCR1B|HS|HSNIK|NIK mitogen-activated protein kinase kinase kinase 14 protein-coding 9692 chr14 101980775 101980879 + 0 NA intron (NM_001376, intron 5 of 77) intron (NM_001376, intron 5 of 77) 16299 NM_001376 1778 Hs.614080 NM_001376 ENSG00000197102 DYNC1H1 CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein cytoplasmic 1 heavy chain 1 protein-coding 9219 chr14 65047783 65047808 + 0 NA intron (NM_001202558, intron 10 of 12) intron (NM_001202558, intron 10 of 12) 3107 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 17445 chr20 1499581 1499676 + 0 NA Intergenic L1M1|LINE|L1 -8041 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 3289 chr10 12068702 12068787 + 0 NA promoter-TSS (NM_018706) promoter-TSS (NM_018706) -173 NM_018706 55526 Hs.104980 NM_018706 ENSG00000181192 DHTKD1 AMOXAD|CMT2Q dehydrogenase E1 and transketolase domain containing 1 protein-coding 9100 chr14 58456112 58456216 + 0 NA intron (NM_001329947, intron 9 of 29) L1M4|LINE|L1 16483 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 20339 chr3 146189657 146189784 + 0 NA Intergenic Intergenic -28225 NM_182943 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 11945 chr17 4143046 4143185 + 0 NA promoter-TSS (NM_015113) promoter-TSS (NM_015113) -53 NM_144611 124936 Hs.513871 NM_144611 ENSG00000167740 CYB5D2 - cytochrome b5 domain containing 2 protein-coding 30749 chrX 54182467 54182571 + 0 NA exon (NM_001300788, exon 1 of 14) exon (NM_001300788, exon 1 of 14) 739 NM_017848 54954 Hs.86045 NM_017848 ENSG00000184083 FAM120C CXorf17|ORF34 family with sequence similarity 120C protein-coding 16436 chr2 148020680 148020808 + 0 NA promoter-TSS (NM_018328) promoter-TSS (NM_018328) 3 NM_001190879 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 12800 chr17 60600041 60600171 + 0 NA promoter-TSS (NM_003620) promoter-TSS (NM_003620) -77 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 10181 chr15 58521653 58521682 + 0 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -22932 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 25751 chr7 17095076 17095273 + 0 NA Intergenic Intergenic -203478 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 26809 chr7 108526225 108526385 + 0 NA promoter-TSS (NM_015723) promoter-TSS (NM_015723) 13 NM_001256008 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 12329 chr17 32445251 32445355 + 0 NA intron (NM_002815, intron 1 of 13) intron (NM_002815, intron 1 of 13) 840 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 9124 chr14 60165333 60165500 + 0 NA promoter-TSS (NM_001322281) promoter-TSS (NM_001322281) 77 NM_001322282 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 8783 chr14 30223560 30223677 + 0 NA Intergenic Intergenic -295876 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 5986 chr11 103609524 103609655 + 0 NA Intergenic LTR50|LTR|ERVL -240317 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 27859 chr8 54896942 54897123 + 0 NA Intergenic MER39|LTR|ERV1 -205425 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 160 chr1 10899905 10900009 + 0 NA Intergenic MIRc|SINE|MIR 82080 NM_001170754 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 27407 chr8 12569937 12570086 + 0 NA intron (NR_047662, intron 8 of 8) AluJr|SINE|Alu 95600 NR_047662 729732 Hs.322761 NR_047662 ENSG00000283674 LOC729732 - uncharacterized LOC729732 ncRNA 27395 chr8 11802647 11802728 + 0 NA promoter-TSS (NM_004462) promoter-TSS (NM_004462) 76 NM_001287745 2222 Hs.593928 NM_004462 ENSG00000079459 FDFT1 DGPT|ERG9|SQS|SS farnesyl-diphosphate farnesyltransferase 1 protein-coding 21764 chr4 122540155 122540259 + 0 NA Intergenic MIR3|SINE|MIR -78776 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 98 chr1 7265781 7265927 + 0 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) 480530 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 7459 chr12 95633337 95633460 + 0 NA Intergenic Intergenic -15857 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 1278 chr1 89843419 89843523 + 0 NA intron (NM_018103, intron 1 of 2) CpG 21550 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family member D protein-coding 29105 chr9 38227274 38227402 + 0 NA Intergenic Intergenic -158125 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 24978 chr6 107114277 107114415 + 0 NA promoter-TSS (NM_001080450) promoter-TSS (NM_001080450) 86 NM_001080450 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 2434 chr1 203606198 203606283 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger -20547 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 17373 chr2 238948569 238948641 + 0 NA Intergenic Intergenic -22336 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 23623 chr5 159262981 159263085 + 0 NA promoter-TSS (NM_145049) promoter-TSS (NM_145049) -34 NM_145049 134510 Hs.591733 NM_145049 ENSG00000164332 UBLCP1 CPUB1 ubiquitin like domain containing CTD phosphatase 1 protein-coding 14400 chr19 37317740 37317863 + 0 NA promoter-TSS (NM_001329775) promoter-TSS (NM_001329775) -81 NR_138108 284459 Hs.657027 NM_181786 ENSG00000181666 HKR1 ZNF875 HKR1, GLI-Kruppel zinc finger family member protein-coding 23348 chr5 140401115 140401209 + 0 NA promoter-TSS (NM_001197030) promoter-TSS (NM_001197030) -652 NM_001197030 54882 Hs.594084 NM_017747 ENSG00000131503 ANKHD1 MASK|MASK1|PP2500|VBARP ankyrin repeat and KH domain containing 1 protein-coding 21671 chr4 106315675 106315788 + 0 NA promoter-TSS (NM_004757) promoter-TSS (NM_004757) 35 NM_004757 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 30805 chrX 70133783 70133904 + 0 NA 5' UTR (NM_001551, exon 2 of 7) 5' UTR (NM_001551, exon 2 of 7) 375 NM_001551 3476 Hs.496267 NM_001551 ENSG00000089289 IGBP1 ALPHA-4|IBP1 immunoglobulin (CD79A) binding protein 1 protein-coding 28122 chr8 85245620 85245724 + 0 NA 5' UTR (NM_198584, exon 1 of 7) 5' UTR (NM_198584, exon 1 of 7) 185 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 24541 chr6 41846741 41846879 + 0 NA intron (NM_018561, intron 3 of 6) L1MB2|LINE|L1 24827 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 18534 chr21 38819959 38820063 + 0 NA intron (NM_005239, intron 8 of 9) intron (NM_005239, intron 8 of 9) 14180 NM_005239 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding 23605 chr5 157913066 157913195 + 0 NA Intergenic Intergenic -53955 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 21074 chr3 197456632 197456739 + 0 NA Intergenic CpG 99302 NM_004051 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 12668 chr17 50373053 50373079 + 0 NA promoter-TSS (NM_001166131) promoter-TSS (NM_001166131) 135 NM_016504 51264 Hs.7736 NM_016504 ENSG00000108826 MRPL27 L27mt mitochondrial ribosomal protein L27 protein-coding 3732 chr10 59967209 59967306 + 0 NA Intergenic Intergenic -6344 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 23770 chr5 175796941 175797160 + 0 NA intron (NM_006650, intron 1 of 4) CpG 443 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 4921 chr11 16632456 16632493 + 0 NA Intergenic L1PA16|LINE|L1 -106127 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 21483 chr4 78552502 78552652 + 0 NA intron (NM_005139, intron 1 of 12) intron (NM_005139, intron 1 of 12) 989 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 8063 chr13 30792727 30792847 + 0 NA Intergenic Intergenic -10419 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 586 chr1 33328058 33328162 + 0 NA intron (NM_001330488, intron 12 of 12) intron (NM_001330488, intron 12 of 12) 4382 NR_037400 100500853 NR_037400 ENSG00000134686 MIR3605 mir-3605 microRNA 3605 ncRNA 21630 chr4 101347633 101347779 + 0 NA promoter-TSS (NM_000944) promoter-TSS (NM_000944) -71 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 30457 chrX 4932886 4932990 + 0 NA Intergenic Intergenic -299366 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 27008 chr7 130441105 130441210 + 0 NA promoter-TSS (NM_018718) promoter-TSS (NM_018718) 53 NM_001257159 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 11071 chr16 17633278 17633382 + 0 NA Intergenic Intergenic -162449 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 16845 chr2 191487036 191487140 + 0 NA Intergenic Intergenic -190984 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 31062 chrX 131792526 131792630 + 0 NA intron (NR_026975, intron 5 of 12) intron (NR_026975, intron 5 of 12) 38065 NR_026975 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 16469 chr2 151945275 151945491 + 0 NA intron (NM_001145798, intron 2 of 12) intron (NM_001145798, intron 2 of 12) 26669 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 8855 chr14 35121898 35122059 + 0 NA promoter-TSS (NM_001256678) promoter-TSS (NM_001256678) -343 NM_014672 9692 Hs.458487 NM_014672 ENSG00000100890 KIAA0391 MRPP3|PRORP KIAA0391 protein-coding 23257 chr5 134648679 134648770 + 0 NA promoter-TSS (NM_001252231) promoter-TSS (NM_001252231) -61 NM_001252231 10802 Hs.595540 NM_021982 ENSG00000113615 SEC24A - SEC24 homolog A, COPII coat complex component protein-coding 8763 chr14 24366798 24366960 + 0 NA promoter-TSS (NM_001320043) promoter-TSS (NM_001320043) -32 NM_001320043 4776 Hs.77810 NM_004554 ENSG00000100968 NFATC4 NF-AT3|NF-ATC4|NFAT3 nuclear factor of activated T-cells 4 protein-coding 3193 chr10 3740187 3740291 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 45042 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 26903 chr7 120402465 120402607 + 0 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 128868 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 10707 chr15 90489703 90489733 + 0 NA intron (NM_003870, intron 33 of 37) intron (NM_003870, intron 33 of 37) -40168 NM_001042574 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 22202 chr5 9653927 9654016 + 0 NA intron (NR_027112, intron 11 of 12) intron (NR_027112, intron 11 of 12) -23620 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 1185 chr1 84506272 84506297 + 0 NA promoter-TSS (NM_001310156) promoter-TSS (NM_001310156) -17 NM_001310156 100505741 Hs.584956 NM_022354 SPATA1 SP-2|SPAP1 spermatogenesis associated 1 protein-coding 7522 chr12 100927913 100928017 + 0 NA intron (NM_001286616, intron 2 of 26) intron (NM_001286616, intron 2 of 26) 26319 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 1741 chr1 152367521 152367689 + 0 NA TTS (NR_103778) TTS (NR_103778) -7599 NM_001014342 388698 Hs.156124 NM_001014342 ENSG00000143520 FLG2 IFPS filaggrin family member 2 protein-coding 23956 chr6 7050995 7051091 + 0 NA Intergenic Intergenic -56554 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 26099 chr7 39761583 39761687 + 0 NA intron (NR_026999, intron 1 of 11) LTR10B1|LTR|ERV1 28067 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 25989 chr7 32163184 32163288 + 0 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -91800 NM_005020 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 15003 chr2 10901341 10901445 + 0 NA Intergenic Intergenic -10544 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 29029 chr9 33001587 33001691 + 0 NA promoter-TSS (NM_001195249) promoter-TSS (NM_001195249) 2 NM_001195252 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 18115 chr20 46363987 46364002 + 0 NA intron (NM_001281460, intron 1 of 10) intron (NM_001281460, intron 1 of 10) 464 NM_015945 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding 2849 chr1 226121929 226121960 + 0 NA Intergenic CpG 59217 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 11143 chr16 23641320 23641462 + 0 NA promoter-TSS (NM_024675) promoter-TSS (NM_024675) 25 NR_037573 84516 Hs.435941 NM_032486 ENSG00000166847 DCTN5 - dynactin subunit 5 protein-coding 480 chr1 28527016 28527172 + 0 NA intron (NM_001048194, intron 1 of 10) intron (NM_001048194, intron 1 of 10) 8861 NM_001048195 1104 Hs.469723 NM_001269 ENSG00000180198 RCC1 CHC1|RCC1-I|SNHG3-RCC1 regulator of chromosome condensation 1 protein-coding 18249 chr20 53691737 53691841 + 0 NA Intergenic Intergenic 83435 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 107 chr1 7954214 7954318 + 0 NA Intergenic CpG -7388 NM_007262 11315 Hs.419640 NM_007262 ENSG00000116288 PARK7 DJ-1|DJ1|HEL-S-67p Parkinsonism associated deglycase protein-coding 21035 chr3 195785165 195785316 + 0 NA exon (NM_001322468, exon 6 of 42) exon (NM_001322468, exon 6 of 42) 26733 NM_001322468 4585 Hs.369646 NM_004532 ENSG00000145113 MUC4 ASGP|HSA276359|MUC-4 mucin 4, cell surface associated protein-coding 2385 chr1 201829035 201829241 + 0 NA promoter-TSS (NM_018085) promoter-TSS (NM_018085) -22 NM_018085 55705 Hs.596014 NM_018085 ENSG00000198700 IPO9 Imp9 importin 9 protein-coding 12181 chr17 18225327 18225475 + 0 NA promoter-TSS (NM_004140) promoter-TSS (NM_004140) -221 NM_004140 3996 Hs.513983 NM_004140 ENSG00000131899 LLGL1 DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1 LLGL1, scribble cell polarity complex component protein-coding 28561 chr8 123042383 123042500 + 0 NA promoter-TSS (NM_001134671) promoter-TSS (NM_001134671) -18 NM_001134671 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 19041 chr22 47835943 47836047 + 0 NA intron (NR_122046, intron 8 of 8) L1MD2|LINE|L1 204321 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 28913 chr9 6080497 6080642 + 0 NA Intergenic Intergenic -64929 NM_012416 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 29046 chr9 33621200 33621356 + 0 NA Intergenic Intergenic -2947 NR_003573 304 Hs.534301 NR_003573 ANXA2P2 ANX2L2|ANX2P2|LPC2B annexin A2 pseudogene 2 pseudo 3147 chr1 247119227 247119290 + 0 NA Intergenic Intergenic -6841 NM_207401 388759 Hs.456511 NM_207401 C1orf229 - chromosome 1 open reading frame 229 protein-coding 19413 chr3 42515520 42515544 + 0 NA intron (NM_004624, intron 2 of 12) intron (NM_004624, intron 2 of 12) 12920 NM_001251885 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 26564 chr7 90245056 90245199 + 0 NA promoter-TSS (NM_001039706) promoter-TSS (NM_001039706) -47 NM_001039706 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69 cilia and flagella associated protein 69 protein-coding 417 chr1 26354177 26354347 + 0 NA promoter-TSS (NM_001039775) promoter-TSS (NM_001039775) -132 NM_001039775 55057 Hs.128738 NM_017977 ENSG00000176092 AIM1L CRYBG2 absent in melanoma 1-like protein-coding 30166 chr9 128067403 128067501 + 0 NA promoter-TSS (NM_197956) promoter-TSS (NM_197956) -132 NM_197956 203245 Hs.373606 NM_197956 ENSG00000171169 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 13907 chr19 2783378 2783531 + 0 NA promoter-TSS (NM_003021) promoter-TSS (NM_003021) -98 NM_003021 6449 Hs.203910 NM_003021 ENSG00000104969 SGTA SGT|alphaSGT|hSGT small glutamine rich tetratricopeptide repeat containing alpha protein-coding 17190 chr2 224971398 224971551 + 0 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) -24409 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 13572 chr18 50374951 50375084 + 0 NA promoter-TSS (NM_001039535) promoter-TSS (NM_001039535) -5 NM_145060 220134 Hs.134726 NM_145060 ENSG00000154839 SKA1 C18orf24 spindle and kinetochore associated complex subunit 1 protein-coding 5772 chr11 85737836 85737940 + 0 NA intron (NM_001289608, intron 3 of 18) intron (NM_001289608, intron 3 of 18) -18538 NM_206930 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 8975 chr14 50396737 50396915 + 0 NA promoter-TSS (NM_004196) promoter-TSS (NM_004196) 578 NM_001282236 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 7056 chr12 53268416 53268445 + 0 NA intron (NM_012291, intron 1 of 30) CpG 131 NM_012291 9700 Hs.153479 NM_012291 ENSG00000135476 ESPL1 ESP1|SEPA extra spindle pole bodies like 1, separase protein-coding 21150 chr4 7043123 7043167 + 0 NA promoter-TSS (NM_153376) promoter-TSS (NM_153376) -144 NM_153376 257236 Hs.656757 NM_153376 ENSG00000173013 CCDC96 - coiled-coil domain containing 96 protein-coding 12598 chr17 47100308 47100438 + 0 NA Intergenic CpG 88939 NM_001293091 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 4547 chr10 123288042 123288146 + 0 NA Intergenic Intergenic 133850 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3, mitotic checkpoint protein protein-coding 19651 chr3 69739322 69739453 + 0 NA promoter-TSS (NM_198159) promoter-TSS (NM_198159) -48 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|MI|WS2|WS2A|bHLHe32 melanogenesis associated transcription factor protein-coding 27419 chr8 13160408 13160512 + 0 NA intron (NM_182643, intron 5 of 17) intron (NM_182643, intron 5 of 17) -27160 NM_006094 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 9413 chr14 76914747 76914842 + 0 NA Intergenic Intergenic -44844 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 1530 chr1 112866235 112866339 + 0 NA Intergenic MER39|LTR|ERV1 -15644 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 23464 chr5 148731050 148731204 + 0 NA Intergenic Intergenic -76600 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 16582 chr2 164205521 164205625 + 0 NA Intergenic Intergenic 362977 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 25190 chr6 135922270 135922300 + 0 NA intron (NM_018945, intron 1 of 12) Tigger19b|DNA|TcMar-Tigger 70589 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 13753 chr18 70280697 70280801 + 0 NA Intergenic MER41B|LTR|ERV1 -8152 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 2504 chr1 206525059 206525137 + 0 NA intron (NM_182664, intron 1 of 4) intron (NM_182664, intron 1 of 4) 17568 NM_182663 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 18586 chr21 44928093 44928197 + 0 NA non-coding (NR_038312, exon 4 of 4) non-coding (NR_038312, exon 4 of 4) 728 NM_001127491 3689 Hs.375957 NM_000211 ENSG00000160255 ITGB2 CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7 integrin subunit beta 2 protein-coding 6980 chr12 49842948 49843002 + 0 NA exon (NM_181708, exon 1 of 2) exon (NM_181708, exon 1 of 2) 154 NM_181708 144233 Hs.142736 NM_181708 ENSG00000186666 BCDIN3D - BCDIN3 domain containing RNA methyltransferase protein-coding 14054 chr19 9768660 9768749 + 0 NA promoter-TSS (NM_001077624) promoter-TSS (NM_001077624) 30 NM_001077624 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 8285 chr13 51583939 51584043 + 0 NA promoter-TSS (NM_052950) promoter-TSS (NM_052950) -357 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 25286 chr6 146358913 146359017 + 0 NA intron (NM_001278065, intron 6 of 9) MamRep38|DNA|hAT -184727 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 18656 chr22 20702826 20702943 + 0 NA intron (NR_026815, intron 2 of 7) CpG-18798 1770 NR_026815 84222 Hs.546454 NM_032262 ENSG00000226287 TMEM191A TMEM191AP transmembrane protein 191A (pseudogene) pseudo 14339 chr19 32104603 32104725 + 0 NA non-coding (NR_110694, exon 1 of 4) non-coding (NR_110694, exon 1 of 4) 1252 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 9491 chr14 85440102 85440175 + 0 NA Intergenic Intergenic 46223 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 3724 chr10 59173530 59173679 + 0 NA TTS (NR_131782) TTS (NR_131782) 2860 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 16422 chr2 145594047 145594131 + 0 NA Intergenic Intergenic 926122 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 8879 chr14 36069125 36069217 + 0 NA Intergenic Intergenic -1256 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 13992 chr19 6057614 6057697 + 0 NA intron (NM_134433, intron 1 of 16) intron (NM_134433, intron 1 of 16) 52998 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 15139 chr2 20179749 20179901 + 0 NA Intergenic Intergenic 45341 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 381 chr1 24502423 24502566 + 0 NA promoter-TSS (NM_001251977) promoter-TSS (NM_001251977) -112 NR_045408 100750325 Hs.399958 NR_045407 RCAN3AS - RCAN3 antisense ncRNA 5020 chr11 24636130 24636254 + 0 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 139222 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 15536 chr2 53202183 53202287 + 0 NA Intergenic Intergenic -499620 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 30667 chrX 47217879 47218046 + 0 NA promoter-TSS (NM_033018) promoter-TSS (NM_033018) -167 NM_033018 5127 Hs.496068 NM_006201 ENSG00000102225 CDK16 PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1 cyclin dependent kinase 16 protein-coding 14535 chr19 44807282 44807386 + 0 NA Intergenic L2b|LINE|L2 -1725 NM_005581 4059 Hs.625725 NM_005581 ENSG00000187244 BCAM AU|CD239|LU|MSK19 basal cell adhesion molecule (Lutheran blood group) protein-coding 7715 chr12 117969049 117969173 + 0 NA promoter-TSS (NM_173598) promoter-TSS (NM_173598) -888 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 2966 chr1 233113596 233113732 + 0 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 162822 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 29174 chr9 70954217 70954357 + 0 NA intron (NM_001007471, intron 1 of 24) intron (NM_001007471, intron 1 of 24) -85229 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 14122 chr19 11597315 11597427 + 0 NA promoter-TSS (NM_001290083) promoter-TSS (NM_001290083) -49 NM_145295 199692 Hs.526665 NM_145295 ENSG00000198551 ZNF627 - zinc finger protein 627 protein-coding 5694 chr11 76920242 76920268 + 0 NA intron (NM_001300953, intron 1 of 9) LTR41|LTR|ERVL 59382 NM_001300955 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA alkaline ceramidase 3 protein-coding 25380 chr6 155085718 155085837 + 0 NA Intergenic Intergenic -4512 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 7424 chr12 92224915 92225019 + 0 NA Intergenic Intergenic 78882 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 4330 chr10 110007881 110007985 + 0 NA promoter-TSS (NM_001320594) promoter-TSS (NM_001320594) -3 NM_016824 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 26163 chr7 44082554 44082710 + 0 NA promoter-TSS (NM_001284330) promoter-TSS (NM_001284330) -92 NM_013284 27434 Hs.596982 NM_013284 ENSG00000122678 POLM Pol Mu|Tdt-N DNA polymerase mu protein-coding 28662 chr8 128787753 128787849 + 0 NA Intergenic Intergenic -223122 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 18537 chr21 38853560 38853664 + 0 NA Intergenic (CCTGGG)n|Simple_repeat|Simple_repeat -3927 NR_109926 101928398 Hs.122403 NR_109926 LOC101928398 - uncharacterized LOC101928398 ncRNA 16224 chr2 120223452 120223532 + 0 NA promoter-TSS (NM_024121) promoter-TSS (NM_024121) -84 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 13372 chr18 28658278 28658365 + 0 NA Intergenic Intergenic -480875 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 18492 chr21 33642205 33642323 + 0 NA promoter-TSS (NM_001331011) promoter-TSS (NM_001331011) -136 NM_001331012 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 17715 chr20 19628748 19628852 + 0 NA intron (NM_020689, intron 6 of 16) intron (NM_020689, intron 6 of 16) -257721 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 773 chr1 43946594 43946728 + 0 NA promoter-TSS (NM_014652) promoter-TSS (NM_014652) -145 NM_014652 9670 Hs.158497 NM_014652 ENSG00000117408 IPO13 IMP13|KAP13|LGL2|RANBP13 importin 13 protein-coding 1247 chr1 87436647 87436751 + 0 NA Intergenic Intergenic -65044 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 17008 chr2 208254137 208254179 + 0 NA 5' UTR (NM_001282387, exon 1 of 10) 5' UTR (NM_001282387, exon 1 of 10) 145 NM_001282387 3417 Hs.593422 NM_005896 ENSG00000138413 IDH1 HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD isocitrate dehydrogenase (NADP(+)) 1, cytosolic protein-coding 19993 chr3 120095616 120095759 + 0 NA Intergenic CpG -1270 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 31132 chrX 149511231 149511361 + 0 NA Intergenic Intergenic -5942 NR_104128 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 16719 chr2 177392967 177393012 + 0 NA promoter-TSS (NR_026966) promoter-TSS (NR_026966) 246 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 11014 chr16 11201896 11202000 + 0 NA Intergenic Intergenic 54234 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 1576 chr1 116537491 116537595 + 0 NA intron (NM_001144822, intron 2 of 4) intron (NM_001144822, intron 2 of 4) 22568 NR_039621 100616384 NR_039621 ENSG00000264419 MIR548AC - microRNA 548ac ncRNA 7133 chr12 56316108 56316315 + 0 NA TTS (NM_001127460) TTS (NM_001127460) 133 NM_001190991 10330 Hs.8752 NM_014255 ENSG00000257727 CNPY2 HP10390|MSAP|TMEM4|ZSIG9 canopy FGF signaling regulator 2 protein-coding 17929 chr20 35516440 35516543 + 0 NA Intergenic Intergenic 13161 NR_026933 140873 Hs.158680 NM_080828 ENSG00000125975 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 20885 chr3 187679790 187679894 + 0 NA Intergenic Intergenic -9429 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 5091 chr11 32090990 32091094 + 0 NA 5' UTR (NM_002901, exon 1 of 6) 5' UTR (NM_002901, exon 1 of 6) 111 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 11136 chr16 23280694 23280843 + 0 NA Intergenic L2b|LINE|L2 -21502 NM_000336 6338 Hs.414614 NM_000336 ENSG00000168447 SCNN1B BESC1|ENaCb|ENaCbeta|SCNEB sodium channel epithelial 1 beta subunit protein-coding 7441 chr12 93570813 93570918 + 0 NA promoter-TSS (NM_001270469) promoter-TSS (NM_001270469) -116 NM_001270468 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 23757 chr5 174724437 174724614 + 0 NA promoter-TSS (NM_002449) promoter-TSS (NM_002449) -47 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 24644 chr6 47170071 47170156 + 0 NA Intergenic Intergenic -127750 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 23358 chr5 140700249 140700362 + 0 NA promoter-TSS (NM_144723) promoter-TSS (NM_144723) -55 NM_144723 153527 Hs.350194 NM_144723 ENSG00000146007 ZMAT2 Ptg-12|Snu23 zinc finger matrin-type 2 protein-coding 10943 chr16 4299188 4299315 + 0 NA Intergenic Intergenic -15510 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 6776 chr12 27077097 27077242 + 0 NA Intergenic Intergenic 5353 NM_001080406 728858 Hs.334003 NM_001080406 ENSG00000214700 C12orf71 - chromosome 12 open reading frame 71 protein-coding 6064 chr11 111310211 111310365 + 0 NA Intergenic Intergenic -5240 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 29504 chr9 90020365 90020469 + 0 NA TTS (NR_038882) TTS (NR_038882) 3118 NR_036253 100422963 NR_036253 ENSG00000263967 MIR4290 - microRNA 4290 ncRNA 10991 chr16 9797498 9797602 + 0 NA intron (NM_000833, intron 12 of 13) intron (NM_000833, intron 12 of 13) -342045 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 7162 chr12 57487905 57488059 + 0 NA promoter-TSS (NM_004990) promoter-TSS (NM_004990) 29 NM_004990 4141 Hs.632707 NM_004990 ENSG00000166986 MARS CMT2U|ILFS2|ILLD|METRS|MRS|MTRNS|SPG70 methionyl-tRNA synthetase protein-coding 6250 chr11 123083125 123083279 + 0 NA exon (NM_024769, exon 5 of 7) exon (NM_024769, exon 5 of 7) -20867 NM_153201 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 5271 chr11 57530840 57530980 + 0 NA promoter-TSS (NM_012456) promoter-TSS (NM_012456) -151 NM_012456 26519 Hs.235750 NM_012456 ENSG00000134809 TIMM10 TIM10|TIM10A|TIMM10A translocase of inner mitochondrial membrane 10 protein-coding 26369 chr7 69780417 69780514 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 181546 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 24568 chr6 42746081 42746215 + 0 NA promoter-TSS (NM_003192) promoter-TSS (NM_003192) -2 NM_003192 6903 Hs.75064 NM_003192 ENSG00000124659 TBCC CFC tubulin folding cofactor C protein-coding 8395 chr13 77522127 77522279 + 0 NA Intergenic Intergenic -13471 NM_144777 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 6021 chr11 107844142 107844246 + 0 NA intron (NM_017515, intron 1 of 7) MIR|SINE|MIR 14994 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 2856 chr1 226547860 226547964 + 0 NA promoter-TSS (NM_001003665) promoter-TSS (NM_001003665) -888 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 21251 chr4 24583664 24583768 + 0 NA intron (NM_001358, intron 1 of 13) intron (NM_001358, intron 1 of 13) 845 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 2199 chr1 182956133 182956237 + 0 NA Intergenic Intergenic -2660 NM_001345928 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 20776 chr3 182435934 182436038 + 0 NA Intergenic L2|LINE|L2 50376 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 29995 chr9 117434736 117434840 + 0 NA Intergenic L2c|LINE|L2 -19749 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 17404 chr2 241508704 241508788 + 0 NA promoter-TSS (NM_001282307) promoter-TSS (NM_001282307) -51 NM_001282308 10494 Hs.516807 NM_006374 ENSG00000115694 STK25 SOK1|YSK1 serine/threonine kinase 25 protein-coding 20127 chr3 129383424 129383528 + 0 NA non-coding (NR_003111, exon 4 of 4) non-coding (NR_003111, exon 4 of 4) 13872 NR_002992 677797 Hs.711399 NR_002992 ENSG00000207088 SNORA7B ACA7B small nucleolar RNA, H/ACA box 7B snoRNA 7667 chr12 112125398 112125511 + 0 NA promoter-TSS (NM_006700) promoter-TSS (NM_006700) -91 NM_001143906 10906 Hs.5148 NM_006700 ENSG00000135148 TRAFD1 FLN29 TRAF-type zinc finger domain containing 1 protein-coding 25544 chr7 1570038 1570142 + 0 NA promoter-TSS (NM_032302) promoter-TSS (NM_032302) 17 NR_021487 114796 Hs.436146 NR_021487 ENSG00000230487 PSMG3-AS1 - PSMG3 antisense RNA 1 (head to head) ncRNA 8358 chr13 74444223 74444327 + 0 NA Intergenic Intergenic 25102 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 20091 chr3 127304221 127304253 + 0 NA Intergenic Intergenic 86433 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 22205 chr5 10249561 10249665 + 0 NA promoter-TSS (NM_001306153) promoter-TSS (NM_001306153) 296 NR_047669 134145 Hs.481569 NM_199133 ENSG00000150756 FAM173B JS-2 family with sequence similarity 173 member B protein-coding 16212 chr2 119265330 119265434 + 0 NA 3' UTR (NM_138637, exon 6 of 6) 3' UTR (NM_138637, exon 6 of 6) -16311 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 6585 chr12 9673872 9673896 + 0 NA intron (NM_001197319, intron 1 of 2) L1PA10|LINE|L1 4176 NR_036693 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 6352 chr11 130003163 130003226 + 0 NA promoter-TSS (NM_020228) promoter-TSS (NM_020228) -359 NM_020228 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7 PR/SET domain 10 protein-coding 23079 chr5 119070875 119071059 + 0 NA promoter-TSS (NM_005509) promoter-TSS (NM_005509) -77 NR_134250 105379143 Hs.636285 NR_134249 ENSG00000249494 LOC105379143 - uncharacterized LOC105379143 ncRNA 3002 chr1 235011971 235012006 + 0 NA Intergenic Intergenic -47989 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 28045 chr8 74350353 74350511 + 0 NA promoter-TSS (NM_001040875) promoter-TSS (NM_001040875) 49 NM_001040875 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 22828 chr5 84394065 84394169 + 0 NA Intergenic Intergenic -9250 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 15296 chr2 30290859 30290963 + 0 NA Intergenic Intergenic -55735 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 6710 chr12 19129699 19129810 + 0 NA promoter-TSS (NM_001143821) promoter-TSS (NM_001143821) 62 NM_001190860 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 8415 chr13 79631430 79631578 + 0 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 64777 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 25401 chr6 157274772 157274848 + 0 NA Intergenic CpG 49449 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 21247 chr4 23022275 23022379 + 0 NA Intergenic Intergenic 308238 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 7396 chr12 89708852 89709037 + 0 NA promoter-TSS (NR_028138) promoter-TSS (NR_028138) -11 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 ATP2B1-AS1 LINC00936 ATP2B1 antisense RNA 1 ncRNA 4173 chr10 97714858 97714913 + 0 NA 3' UTR (NM_031484, exon 1 of 2) 3' UTR (NM_031484, exon 1 of 2) 1177 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 29768 chr9 107213642 107213746 + 0 NA Intergenic Intergenic -69542 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 28481 chr8 118031894 118032041 + 0 NA intron (NM_000127, intron 1 of 10) MER63B|DNA|hAT-Blackjack 79852 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 22925 chr5 96662840 96663030 + 0 NA promoter-TSS (NM_001330628) promoter-TSS (NM_001330628) -44 NM_001330628 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 6084 chr11 112086716 112086854 + 0 NA promoter-TSS (NR_077060) promoter-TSS (NR_077060) 13 NM_012459 26521 Hs.279915 NM_012459 ENSG00000150779 TIMM8B DDP2|TIM8B translocase of inner mitochondrial membrane 8 homolog B protein-coding 6427 chr12 503183 503317 + 0 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 42873 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 28514 chr8 119416280 119416414 + 0 NA promoter-TSS (NM_002514) promoter-TSS (NM_002514) 35 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 NOV CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh nephroblastoma overexpressed protein-coding 1646 chr1 146052091 146052179 + 0 NA promoter-TSS (NR_125967) promoter-TSS (NR_125967) 109 NR_104085 101954276 NR_104085 ENSG00000201558 RNVU1-6 RNU1-99|vU1.6 RNA, variant U1 small nuclear 6 snRNA 4286 chr10 103789798 103789902 + 0 NA intron (NM_014631, intron 2 of 13) intron (NM_014631, intron 2 of 13) 43071 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 3690 chr10 52780220 52780324 + 0 NA Intergenic Intergenic -8572 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 744 chr1 42936692 42936796 + 0 NA intron (NM_006516, intron 2 of 9) intron (NM_006516, intron 2 of 9) -22305 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 12804 chr17 61412343 61412370 + 0 NA exon (NM_203425, exon 1 of 1) exon (NM_203425, exon 1 of 1) 605 NM_203425 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 protein-coding 28462 chr8 116874177 116874330 + 0 NA promoter-TSS (NR_033886) promoter-TSS (NR_033886) -171 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 31087 chrX 135004211 135004364 + 0 NA Intergenic CpG 13349 NM_001163438 644538 Hs.42239 NM_001163438 ENSG00000184785 SMIM10 CXorf69 small integral membrane protein 10 protein-coding 20611 chr3 169431214 169431318 + 0 NA intron (NM_004991, intron 1 of 16) intron (NM_004991, intron 1 of 16) -16601 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 26395 chr7 73667758 73667793 + 0 NA promoter-TSS (NM_001077621) promoter-TSS (NM_001077621) -69 NM_001077621 155382 Hs.647037 NM_152560 ENSG00000176428 VPS37D WBSCR24 VPS37D, ESCRT-I subunit protein-coding 9041 chr14 54681954 54682086 + 0 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -72768 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 30467 chrX 8191276 8191364 + 0 NA Intergenic Intergenic -20053 NM_016378 51480 Hs.279737 NM_016378 ENSG00000177504 VCX2 VCX-2r|VCX2R|VCXB variable charge, X-linked 2 protein-coding 23815 chr5 179060287 179060393 + 0 NA promoter-TSS (NM_014594) promoter-TSS (NM_014594) -75 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 12404 chr17 37476545 37476710 + 0 NA intron (NM_001166105, intron 15 of 15) intron (NM_001166105, intron 15 of 15) -13218 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 22345 chr5 33148374 33148478 + 0 NA Intergenic Intergenic 200983 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 23402 chr5 142529731 142529885 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 84353 NM_033137 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 4562 chr10 124530249 124530394 + 0 NA intron (NM_022126, intron 6 of 6) intron (NM_022126, intron 6 of 6) 68549 NM_001318332 64077 Hs.527748 NM_022126 ENSG00000107902 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 287 chr1 19659906 19660046 + 0 NA Intergenic Intergenic -5311 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 19487 chr3 49029348 49029500 + 0 NA promoter-TSS (NM_000884) promoter-TSS (NM_000884) 18 NM_000884 3615 Hs.654400 NM_000884 ENSG00000178035 IMPDH2 IMPD2|IMPDH-II inosine monophosphate dehydrogenase 2 protein-coding 4914 chr11 16097616 16097854 + 0 NA intron (NM_001145811, intron 7 of 14) intron (NM_001145811, intron 7 of 14) -128114 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 17438 chr20 1213045 1213217 + 0 NA Intergenic Intergenic 9677 NM_001009612 400831 Hs.148503 NM_001009612 ENSG00000215595 C20orf202 - chromosome 20 open reading frame 202 protein-coding 19561 chr3 53256094 53256198 + 0 NA promoter-TSS (NM_001064) promoter-TSS (NM_001064) -32 NR_047580 7086 Hs.89643 NM_001064 ENSG00000163931 TKT HEL-S-48|HEL107|SDDHD|TK|TKT1 transketolase protein-coding 18068 chr20 44522048 44522146 + 0 NA promoter-TSS (NM_198941) promoter-TSS (NM_198941) 19 NM_006811 10955 Hs.272168 NM_006811 ENSG00000132824 SERINC3 AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1 serine incorporator 3 protein-coding 26303 chr7 55020729 55020833 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 1749 NM_201284 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 21620 chr4 99816609 99816764 + 0 NA promoter-TSS (NM_014395) promoter-TSS (NM_014395) -138 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 25773 chr7 18352509 18352620 + 0 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 62472 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 3858 chr10 71767173 71767369 + 0 NA intron (NM_022153, intron 1 of 6) intron (NM_022153, intron 1 of 6) 6309 NM_022153 64115 Hs.47382 NM_022153 ENSG00000107738 VSIR B7-H5|B7H5|C10orf54|DD1alpha|GI24|PD-1H|PP2135|SISP1|VISTA V-set immunoregulatory receptor protein-coding 28437 chr8 110848236 110848340 + 0 NA Intergenic Intergenic 179145 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 23489 chr5 149561895 149562042 + 0 NA Intergenic Intergenic -10416 NM_001892 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 24998 chr6 109229662 109229819 + 0 NA Intergenic Intergenic -6874 NM_001277339 100996634 NM_001277339 LOC100996634 - transmembrane protein FLJ37396 protein-coding 24280 chr6 28399754 28399765 + 0 NA promoter-TSS (NR_136510) promoter-TSS (NR_136510) 8 NR_028077 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 8927 chr14 42193239 42193422 + 0 NA Intergenic Intergenic 586474 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 515 chr1 31152571 31152675 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -86906 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1 pumilio RNA binding family member 1 protein-coding 24737 chr6 56663455 56663559 + 0 NA intron (NM_001144770, intron 7 of 94) intron (NM_001144770, intron 7 of 94) -20611 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 18086 chr20 45348523 45348627 + 0 NA promoter-TSS (NM_002999) promoter-TSS (NM_002999) -151 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 11278 chr16 46790002 46790106 + 0 NA Intergenic CpG -26808 NM_001308301 91807 Hs.130465 NM_182493 ENSG00000140795 MYLK3 MLCK|MLCK2|caMLCK myosin light chain kinase 3 protein-coding 2761 chr1 221869021 221869186 + 0 NA Intergenic Intergenic -28437 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 15750 chr2 69779442 69779527 + 0 NA intron (NM_001320702, intron 1 of 12) intron (NM_001320702, intron 1 of 12) 37510 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 1107 chr1 69948041 69948145 + 0 NA intron (NM_001330635, intron 9 of 26) MER44B|DNA|TcMar-Tigger 28771 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 2996 chr1 234746892 234746996 + 0 NA Intergenic Intergenic 22902 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 13437 chr18 35478702 35478806 + 0 NA intron (NM_194281, intron 3 of 4) intron (NM_194281, intron 3 of 4) 18895 NM_001308064 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 14409 chr19 38300733 38300837 + 0 NA Intergenic Intergenic -3376 NM_001317801 64073 Hs.631544 NM_022125 ENSG00000167644 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 26584 chr7 92134501 92134644 + 0 NA promoter-TSS (NM_000786) promoter-TSS (NM_000786) 9 NR_122110 613126 Hs.662663 NR_122109 ENSG00000188693 CYP51A1-AS1 LRRD1-AS1 CYP51A1 antisense RNA 1 ncRNA 22997 chr5 109191226 109191330 + 0 NA 3' UTR (NM_001308028, exon 18 of 18) 3' UTR (NM_001308028, exon 18 of 18) 218696 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 19470 chr3 48492589 48492736 + 0 NA intron (NM_001272065, intron 2 of 5) LTR47A|LTR|ERVL 11388 NM_001272068 51246 Hs.414579 NM_016479 ENSG00000164054 SHISA5 SCOTIN shisa family member 5 protein-coding 9266 chr14 68466774 68466897 + 0 NA intron (NM_002877, intron 9 of 10) intron (NM_002877, intron 9 of 10) 161952 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 6614 chr12 12562638 12562780 + 0 NA promoter-TSS (NM_030640) promoter-TSS (NM_030640) -195 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 4104 chr10 94403722 94403803 + 0 NA intron (NM_015188, intron 1 of 12) intron (NM_015188, intron 1 of 12) 1333 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 24080 chr6 13913174 13913278 + 0 NA Intergenic Intergenic -11220 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 24927 chr6 95596205 95596309 + 0 NA intron (NM_024641, intron 2 of 4) L1MC2|LINE|L1 18760 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 7301 chr12 77324883 77324901 + 0 NA Intergenic (CGCGCT)n|Simple_repeat|Simple_repeat -259312 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 21352 chr4 49634285 49634436 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 647718 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 10339 chr15 67746613 67746754 + 0 NA intron (NM_145160, intron 17 of 21) intron (NM_145160, intron 17 of 21) -73021 NM_001258024 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 9515 chr14 88792792 88792990 + 0 NA promoter-TSS (NM_183387) promoter-TSS (NM_183387) -139 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2 echinoderm microtubule associated protein like 5 protein-coding 3958 chr10 78047376 78047480 + 0 NA intron (NM_001142285, intron 4 of 4) intron (NM_001142285, intron 4 of 4) 13668 NM_033022 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24 ribosomal protein S24 protein-coding 14469 chr19 40778131 40778157 + 0 NA promoter-TSS (NR_037791) promoter-TSS (NR_037791) -75 NM_016154 53916 Hs.631539 NM_016154 ENSG00000167578 RAB4B - RAB4B, member RAS oncogene family protein-coding 12381 chr17 35795105 35795209 + 0 NA intron (NM_001032278, intron 1 of 2) CpG 550 NM_024302 79148 Hs.380710 NM_024302 ENSG00000271447 MMP28 EPILYSIN|MM28|MMP-25|MMP-28|MMP25 matrix metallopeptidase 28 protein-coding 14812 chr19 55339700 55339749 + 0 NA promoter-TSS (NM_032701) promoter-TSS (NM_032701) -129 NM_032701 84787 Hs.590982 NM_032701 ENSG00000133247 KMT5C SUV420H2|Suv4-20h2 lysine methyltransferase 5C protein-coding 18072 chr20 44692989 44693235 + 0 NA Intergenic Intergenic -21373 NR_034104 79015 Hs.671450 NM_024049 ENSG00000283440 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 30824 chrX 72277156 72277308 + 0 NA promoter-TSS (NM_001007) promoter-TSS (NM_001007) 59 NM_001007 6191 Hs.118076 NM_001007 ENSG00000198034 RPS4X CCG2|DXS306|RPS4|S4|SCAR|SCR10 ribosomal protein S4, X-linked protein-coding 13049 chr17 76671761 76671906 + 0 NA promoter-TSS (NR_130916) promoter-TSS (NR_130916) -95 NR_130916 105274304 Hs.572495 NR_130916 ENSG00000261335 LOC105274304 - uncharacterized LOC105274304 ncRNA 2192 chr1 182391713 182391851 + 0 NA promoter-TSS (NM_001033056) promoter-TSS (NM_001033056) -378 NM_001033056 2752 Hs.132016 NM_002065 ENSG00000135821 GLUL GLNS|GS|PIG43|PIG59 glutamate-ammonia ligase protein-coding 19658 chr3 71447985 71448089 + 0 NA intron (NM_001012505, intron 3 of 6) intron (NM_001012505, intron 3 of 6) 94052 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 14129 chr19 11924999 11925130 + 0 NA promoter-TSS (NM_001271848) promoter-TSS (NM_001271848) -4 NM_001271848 90592 Hs.528486 NM_144566 ENSG00000196757 ZNF700 - zinc finger protein 700 protein-coding 19320 chr3 33097176 33097285 + 0 NA promoter-TSS (NM_001136238) promoter-TSS (NM_001136238) 0 NM_001317040 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 16892 chr2 199459355 199459494 + 0 NA intron (NM_015265, intron 2 of 11) CpG-16887 -1328 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 7729 chr12 119176482 119176523 + 0 NA promoter-TSS (NR_134996) promoter-TSS (NR_134996) -18 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 24481 chr6 37029457 37029616 + 0 NA TTS (NM_173558) TTS (NM_173558) 23889 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 15468 chr2 45238218 45238322 + 0 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 16671 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 333 chr1 21999750 21999900 + 0 NA Intergenic Intergenic -1831 NM_005747 10136 Hs.181289 NM_005747 ENSG00000142789 CELA3A ELA3|ELA3A chymotrypsin like elastase family member 3A protein-coding 6944 chr12 47949635 47949716 + 0 NA Intergenic Intergenic -13872 NM_001143842 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 13547 chr18 49021617 49021735 + 0 NA Intergenic Intergenic 28092 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 29113 chr9 41232658 41232794 + 0 NA Intergenic AluJo|SINE|Alu -1029 NR_039688 100616184 NR_039688 ENSG00000276029 MIR4477A - microRNA 4477a ncRNA 12920 chr17 70293753 70293793 + 0 NA Intergenic L1PA10|LINE|L1 124238 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 6525 chr12 6568242 6568396 + 0 NA promoter-TSS (NM_006170) promoter-TSS (NM_006170) 13 NM_001033714 4839 Hs.534334 NM_006170 ENSG00000111641 NOP2 NOL1|NOP120|NSUN1|p120 NOP2 nucleolar protein protein-coding 30660 chrX 46792090 46792144 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR -32945 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 11114 chr16 21502363 21502516 + 0 NA promoter-TSS (NR_027155) promoter-TSS (NR_027155) -158 NR_027155 100271836 Hs.552700 NR_027155 ENSG00000180747 SMG1P3 - SMG1P3, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 3 pseudo 27363 chr8 9053424 9053528 + 0 NA Intergenic MER21C|LTR|ERVL 5031 NR_039804 100616350 NR_039804 ENSG00000263407 MIR4660 - microRNA 4660 ncRNA 17394 chr2 240586631 240586765 + 0 NA promoter-TSS (NR_103792) promoter-TSS (NR_103792) -18 NM_023083 11132 Hs.728234 NM_021251 ENSG00000142330 CAPN10 CANP10|NIDDM1 calpain 10 protein-coding 4451 chr10 118459678 118459782 + 0 NA Intergenic Intergenic 102622 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 23964 chr6 7267584 7267712 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 45666 NM_001292008 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 21036 chr3 195821453 195821557 + 0 NA Intergenic Intergenic -9532 NM_018406 4585 Hs.369646 NM_004532 ENSG00000145113 MUC4 ASGP|HSA276359|MUC-4 mucin 4, cell surface associated protein-coding 17891 chr20 34112303 34112397 + 0 NA promoter-TSS (NM_003908) promoter-TSS (NM_003908) 6 NM_003908 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 7483 chr12 97752278 97752382 + 0 NA intron (NR_077241, intron 1 of 6) Charlie18a|DNA|hAT-Charlie 1268 NR_077241 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 12074 chr17 8200231 8200369 + 0 NA Intergenic MER50C|LTR|ERV1 9925 NR_132731 9212 Hs.442658 NM_004217 ENSG00000178999 AURKB AIK2|AIM-1|AIM1|ARK2|AurB|IPL1|PPP1R48|STK12|STK5|aurkb-sv1|aurkb-sv2 aurora kinase B protein-coding 25961 chr7 30142752 30142838 + 0 NA intron (NM_152793, intron 1 of 2) intron (NM_152793, intron 1 of 2) 7859 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 24919 chr6 90411585 90411587 + 0 NA Intergenic Intergenic 98844 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 15528 chr2 49914393 49914497 + 0 NA Intergenic LTR16C|LTR|ERVL 59758 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 17531 chr20 5674141 5674292 + 0 NA Intergenic L1ME3G|LINE|L1 -63190 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 20070 chr3 125433848 125433985 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -58562 NM_021964 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 29240 chr9 73349624 73349715 + 0 NA Intergenic L1MEc|LINE|L1 197938 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 26050 chr7 36115614 36115755 + 0 NA Intergenic Intergenic 20374 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 14098 chr19 10939580 10939649 + 0 NA Intergenic Intergenic -10602 NM_024029 78992 Hs.164026 NM_024029 ENSG00000130733 YIPF2 FinGER2 Yip1 domain family member 2 protein-coding 1582 chr1 116853834 116853938 + 0 NA Intergenic Intergenic -56037 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 26079 chr7 38335662 38335766 + 0 NA Intergenic Intergenic -5863 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 29266 chr9 75171087 75171191 + 0 NA Intergenic MER72|LTR|ERV1 82657 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 24533 chr6 41546538 41546683 + 0 NA promoter-TSS (NR_126417) promoter-TSS (NR_126417) 184 NM_138457 116113 Hs.131436 NM_138457 ENSG00000137166 FOXP4 hFKHLA forkhead box P4 protein-coding 17834 chr20 31503217 31503321 + 0 NA Intergenic Intergenic -11141 NM_030789 81502 Hs.373741 NM_030789 ENSG00000101294 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1 histocompatibility minor 13 protein-coding 17998 chr20 39112162 39112230 + 0 NA Intergenic Intergenic 112552 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 15088 chr2 16860743 16860897 + 0 NA Intergenic Intergenic -194954 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 11182 chr16 28823948 28824068 + 0 NA intron (NM_148415, intron 1 of 22) CpG 960 NM_148415 11273 Hs.460499 NM_007245 ENSG00000168488 ATXN2L A2D|A2LG|A2LP|A2RP ataxin 2 like protein-coding 24505 chr6 37819611 37819667 + 0 NA 5' UTR (NM_021943, exon 1 of 6) 5' UTR (NM_021943, exon 1 of 6) 108 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 20517 chr3 158644391 158644521 + 0 NA promoter-TSS (NM_001308166) promoter-TSS (NM_001308166) -72 NM_001308164 85476 Hs.518355 NM_024996 ENSG00000168827 GFM1 COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1 G elongation factor mitochondrial 1 protein-coding 2283 chr1 193971722 193971904 + 0 NA Intergenic Intergenic 667068 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 2603 chr1 211470158 211470262 + 0 NA Intergenic Intergenic 22707 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3 protein-coding 9644 chr14 98887175 98887279 + 0 NA Intergenic Intergenic 175614 NM_001346978 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 18312 chr20 57435810 57435844 + 0 NA Intergenic Intergenic 44429 NM_001291780 55544 Hs.236361 NM_017495 ENSG00000132819 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 19215 chr3 16068197 16068301 + 0 NA Intergenic LTR16A1|LTR|ERVL -106073 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 30353 chr9 136118950 136119033 + 0 NA promoter-TSS (NM_001256526) promoter-TSS (NM_001256526) -106 NM_152833 90120 Hs.287411 NM_152833 ENSG00000238227 C9orf69 - chromosome 9 open reading frame 69 protein-coding 1238 chr1 86993459 86993563 + 0 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 78859 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 18165 chr20 49772380 49772484 + 0 NA Intergenic Intergenic -40281 NR_048538 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 1559 chr1 115139024 115139171 + 0 NA Intergenic Intergenic -49597 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 23388 chr5 142024982 142025069 + 0 NA Intergenic Intergenic -11970 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 7157 chr12 57167251 57167370 + 0 NA intron (NM_002332, intron 18 of 88) intron (NM_002332, intron 18 of 88) -19691 NR_131939 105751187 Hs.609540 NR_131938 ENSG00000259125 LRP1-AS - LRP1 antisense RNA ncRNA 5027 chr11 26088535 26088545 + 0 NA Intergenic Intergenic -100583 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 18617 chr22 18001815 18001919 + 0 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) -20906 NR_030378 693233 NR_030378 ENSG00000207780 MIR648 MIRN648|hsa-mir-648 microRNA 648 ncRNA 14745 chr19 51688975 51689079 + 0 NA promoter-TSS (NM_001316994) promoter-TSS (NM_001316994) -407 NM_001316994 147650 Hs.467174 NM_207324 ENSG00000182310 SPACA6 LET7EH|LINC00085|NCRNA00085|SPACA6P sperm acrosome associated 6 protein-coding 13945 chr19 4342886 4342957 + 0 NA promoter-TSS (NM_001159846) promoter-TSS (NM_001159846) -606 NM_001300862 84954 Hs.321689 NM_032868 ENSG00000008382 MPND - MPN domain containing protein-coding 24897 chr6 87731936 87732047 + 0 NA Intergenic Intergenic -29724 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 20867 chr3 186570424 186570578 + 0 NA promoter-TSS (NM_001134415) promoter-TSS (NM_001134415) 42 NM_001134415 55171 Hs.518469 NM_018138 ENSG00000113838 TBCCD1 - TBCC domain containing 1 protein-coding 6491 chr12 5988764 5988868 + 0 NA intron (NM_000552, intron 38 of 51) intron (NM_000552, intron 38 of 51) -42584 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 1937 chr1 161399743 161399859 + 0 NA Intergenic CpG -31918 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 21092 chr3 198072088 198072192 + 0 NA intron (NR_003291, intron 4 of 9) MamGypLTR3a|LTR|Gypsy 8531 NR_003291 348840 Hs.512227 NM_182631 ENSG00000226435 ANKRD18DP - ankyrin repeat domain 18D, pseudogene pseudo 17317 chr2 234951650 234951739 + 0 NA promoter-TSS (NM_014521) promoter-TSS (NM_014521) -290 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 16086 chr2 108314650 108314718 + 0 NA Intergenic Intergenic -7554 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 5556 chr11 67354701 67354805 + 0 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) -1157 NM_021173 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 19911 chr3 113745236 113745411 + 0 NA intron (NM_025146, intron 1 of 4) AmnSINE1|SINE|5S-Deu-L2 976 NM_001308445 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 9490 chr14 85437332 85437436 + 0 NA Intergenic Intergenic 43469 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 13400 chr18 31513623 31513751 + 0 NA intron (NM_001943, intron 1 of 14) intron (NM_001943, intron 1 of 14) 15683 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 3809 chr10 68543069 68543173 + 0 NA Intergenic ERVL47-int|LTR|ERVL -15598 NM_001324313 8034 Hs.180408 NM_152707 ENSG00000122912 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 member 16 protein-coding 21680 chr4 107896224 107896353 + 0 NA intron (NM_152621, intron 2 of 5) intron (NM_152621, intron 2 of 5) 3024 NM_001136257 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 10493 chr15 77546144 77546296 + 0 NA Intergenic Intergenic 20625 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 22298 chr5 17398702 17398806 + 0 NA Intergenic Intergenic -5265 NR_134275 101929544 Hs.23725 NR_134273 ENSG00000248455 LOC101929544 - uncharacterized LOC101929544 ncRNA 20209 chr3 134847142 134847225 + 0 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 51926 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 10043 chr15 47988042 47988146 + 0 NA Intergenic Intergenic -132878 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 20450 chr3 154122175 154122279 + 0 NA exon (NM_001251962, exon 2 of 15) exon (NM_001251962, exon 2 of 15) 867 NM_015595 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 11841 chr16 89247366 89247470 + 0 NA Intergenic CpG 29715 NM_182531 197320 Hs.647385 NM_182531 ENSG00000170100 ZNF778 - zinc finger protein 778 protein-coding 23070 chr5 116085339 116085442 + 0 NA promoter-TSS (NM_001308080) promoter-TSS (NM_001308080) -72 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 13480 chr18 44679033 44679183 + 0 NA Intergenic CpG -1065 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 8868 chr14 35403819 35403962 + 0 NA intron (NM_020529, intron 1 of 5) CpG 864 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 815 chr1 46198319 46198423 + 0 NA promoter-TSS (NM_001290130) promoter-TSS (NM_001290130) 78 NM_017739 55624 Hs.525134 NM_017739 ENSG00000085998 POMGNT1 GNTI.2|GnT I.2|LGMD2O|MEB|MGAT1.2|RP76|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 21528 chr4 83485051 83485256 + 0 NA promoter-TSS (NM_139076) promoter-TSS (NM_139076) -16 NM_139076 84142 Hs.334772 NM_139076 ENSG00000163322 FAM175A ABRA1|CCDC98 family with sequence similarity 175 member A protein-coding 20382 chr3 149812626 149812735 + 0 NA promoter-TSS (NM_007282) promoter-TSS (NM_007282) -8 NM_007282 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 RZF ring finger protein 13 protein-coding 17171 chr2 223815197 223815410 + 0 NA intron (NR_110906, intron 1 of 3) intron (NR_110906, intron 1 of 3) 22299 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 sigma 3 subunit protein-coding 14578 chr19 45730865 45731009 + 0 NA promoter-TSS (NM_001080469) promoter-TSS (NM_001080469) -44 NM_001080469 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 18817 chr22 32558777 32558881 + 0 NA intron (NM_001135774, intron 7 of 13) AmnSINE1|SINE|5S-Deu-L2 83592 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 16162 chr2 112869631 112869781 + 0 NA Intergenic Intergenic -32927 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 14960 chr2 9179940 9180044 + 0 NA Intergenic Intergenic -26773 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 167 chr1 11681089 11681267 + 0 NA promoter-TSS (NM_006341) promoter-TSS (NM_006341) 36 NM_006341 10459 Hs.19400 NM_006341 ENSG00000116670 MAD2L2 FANCV|MAD2B|POLZ2|REV7 MAD2 mitotic arrest deficient-like 2 (yeast) protein-coding 3564 chr10 34504682 34504768 + 0 NA intron (NM_001184791, intron 3 of 20) intron (NM_001184791, intron 3 of 20) 310600 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 26389 chr7 73522286 73522408 + 0 NA promoter-TSS (NM_032408) promoter-TSS (NM_032408) -62 NM_032408 9031 Hs.743372 NM_023005 ENSG00000009954 BAZ1B WBSCR10|WBSCR9|WSTF bromodomain adjacent to zinc finger domain 1B protein-coding 26090 chr7 39519983 39520113 + 0 NA Intergenic Intergenic -46328 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1D1 C7orf36|GK003 Yae1 domain containing 1 protein-coding 5933 chr11 96761636 96761740 + 0 NA Intergenic Intergenic 253263 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LOC105369443 - uncharacterized LOC105369443 ncRNA 4971 chr11 19117028 19117153 + 0 NA promoter-TSS (NM_001001483) promoter-TSS (NM_001001483) -55 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 13842 chr19 883695 883774 + 0 NA intron (NM_005481, intron 6 of 15) intron (NM_005481, intron 6 of 15) 9484 NM_005481 10025 Hs.365207 NM_005481 ENSG00000175221 MED16 DRIP92|THRAP5|TRAP95 mediator complex subunit 16 protein-coding 12867 chr17 65362969 65363110 + 0 NA Intergenic Intergenic -94502 NR_131984 105827617 NR_131984 ENSG00000263520 CRAT40 - cervical cancer-associated transcript 40 ncRNA 9314 chr14 70782418 70782568 + 0 NA intron (NM_001284231, intron 1 of 11) intron (NM_001284231, intron 1 of 11) 959 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 22174 chr5 5336018 5336087 + 0 NA Intergenic Intergenic -86621 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 8119 chr13 37000718 37000804 + 0 NA 5' UTR (NM_181503, exon 1 of 11) 5' UTR (NM_181503, exon 1 of 11) 220 NM_181503 11340 Hs.294041 NM_181503 ENSG00000120699 EXOSC8 CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 30630 chrX 41085269 41085359 + 0 NA promoter-TSS (NM_001039590) promoter-TSS (NM_001039590) -321 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9, X-linked protein-coding 13596 chr18 52313337 52313441 + 0 NA Intergenic Intergenic -26783 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 28588 chr8 125031981 125032149 + 0 NA intron (NM_014846, intron 27 of 28) intron (NM_014846, intron 27 of 28) 33587 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 23883 chr6 2578760 2578794 + 0 NA Intergenic LTR54B|LTR|ERV1 55826 NR_131168 154386 Hs.680574 NM_152554 ENSG00000164385 LINC01600 C6orf195|bA145H9.2 long intergenic non-protein coding RNA 1600 ncRNA 8338 chr13 72221357 72221500 + 0 NA Intergenic L1MA4A|LINE|L1 -354236 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 393 chr1 25430681 25430863 + 0 NA promoter-TSS (NM_001282564) promoter-TSS (NM_001282564) -86 NM_001282564 55219 Hs.189782 NM_018202 ENSG00000204178 TMEM57 MACOILIN transmembrane protein 57 protein-coding 27958 chr8 65948540 65948741 + 0 NA Intergenic Intergenic -72916 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 10754 chr15 94236745 94236849 + 0 NA Intergenic Intergenic -61404 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 25597 chr7 5427975 5428084 + 0 NA Intergenic CpG-25497 -4483 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 8271 chr13 49996724 49996872 + 0 NA promoter-TSS (NM_213590) promoter-TSS (NM_213590) -209 NM_005798 10206 Hs.436922 NM_005798 ENSG00000204977 TRIM13 CAR|DLEU5|LEU5|RFP2|RNF77 tripartite motif containing 13 protein-coding 22847 chr5 88420071 88420165 + 0 NA intron (NR_105020, intron 2 of 2) intron (NR_105020, intron 2 of 2) 18972 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 658 chr1 38030249 38030353 + 0 NA Intergenic Intergenic 16477 NM_002699 5453 Hs.1837 NM_002699 ENSG00000185668 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 19693 chr3 86991351 86991407 + 0 NA promoter-TSS (NM_001320493) promoter-TSS (NM_001320493) -256 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 10463 chr15 75175683 75175769 + 0 NA Intergenic Intergenic -26154 NM_015492 56905 Hs.17936 NM_015492 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 274 chr1 18998465 18998582 + 0 NA Intergenic Intergenic -42191 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 13218 chr18 3247358 3247466 + 0 NA promoter-TSS (NM_001303048) promoter-TSS (NM_001303048) -70 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 4786 chr11 8911109 8911260 + 0 NA promoter-TSS (NM_005418) promoter-TSS (NM_005418) -8 NR_045418 56672 Hs.131180 NM_020642 ENSG00000166452 AKIP1 BCA3|C11orf17 A-kinase interacting protein 1 protein-coding 25295 chr6 147508489 147508512 + 0 NA promoter-TSS (NM_001030060) promoter-TSS (NM_001030060) -192 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 29284 chr9 76270089 76270193 + 0 NA intron (NM_001190482, intron 24 of 36) intron (NM_001190482, intron 24 of 36) 124387 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 7612 chr12 108302548 108302678 + 0 NA intron (NM_001142344, intron 1 of 2) intron (NM_001142344, intron 1 of 2) 18049 NM_001142345 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 1128 chr1 74733025 74733213 + 0 NA promoter-TSS (NM_001162916) promoter-TSS (NM_001162916) -33 NM_001162916 127253 Hs.348411 NM_138467 ENSG00000162623 TYW3 C1orf171 tRNA-yW synthesizing protein 3 homolog protein-coding 18092 chr20 45419597 45419701 + 0 NA intron (NR_047695, intron 2 of 8) intron (NR_047695, intron 2 of 8) 3582 NR_047695 51604 Hs.437388 NM_015937 ENSG00000124155 PIGT CGI-06|MCAHS3|NDAP|PNH2 phosphatidylinositol glycan anchor biosynthesis class T protein-coding 15977 chr2 96637916 96638067 + 0 NA promoter-TSS (NR_047658) promoter-TSS (NR_047658) 69 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 9324 chr14 71372597 71372692 + 0 NA Intergenic Intergenic -25693 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 7407 chr12 90905785 90905889 + 0 NA Intergenic LTR16A|LTR|ERVL -12186 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 29471 chr9 87862678 87862782 + 0 NA Intergenic Intergenic -3674 NR_040117 392364 Hs.689633 NR_040117 LOC392364 - nuclear pore associated protein 1 pseudogene pseudo 27990 chr8 69663825 69663972 + 0 NA Intergenic Intergenic 70998 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 23676 chr5 168314921 168315006 + 0 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 22903 NM_001161662 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 25635 chr7 6484160 6484264 + 0 NA promoter-TSS (NM_001100603) promoter-TSS (NM_001100603) 6 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 30050 chr9 121963811 121963874 + 0 NA intron (NM_001139442, intron 6 of 8) intron (NM_001139442, intron 6 of 8) 129764 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 20785 chr3 182740851 182740955 + 0 NA Intergenic Intergenic -52600 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 13145 chr17 81891686 81891790 + 0 NA promoter-TSS (NM_001002244) promoter-TSS (NM_001002244) 25 NM_001289419 51529 Hs.534456 NM_016476 ENSG00000141552 ANAPC11 APC11|Apc11p|HSPC214 anaphase promoting complex subunit 11 protein-coding 8323 chr13 64075845 64075870 + 0 NA Intergenic MER52A|LTR|ERV1 -231732 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 4737 chr11 5685029 5685169 + 0 NA promoter-TSS (NM_033034) promoter-TSS (NM_033034) 10 NM_033093 85363 Hs.125300 NM_033034 ENSG00000132256 TRIM5 RNF88|TRIM5alpha tripartite motif containing 5 protein-coding 26527 chr7 85160497 85160550 + 0 NA Intergenic Intergenic -38592 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 18099 chr20 45791760 45791959 + 0 NA promoter-TSS (NM_080614) promoter-TSS (NM_080614) 49 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 3515 chr10 30447281 30447306 + 0 NA intron (NM_001320961, intron 2 of 7) intron (NM_001320961, intron 2 of 7) 12658 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 8916 chr14 39103268 39103491 + 0 NA 5' UTR (NM_006364, exon 1 of 20) 5' UTR (NM_006364, exon 1 of 20) 149 NM_006364 10484 Hs.272927 NM_006364 ENSG00000100934 SEC23A CLSD Sec23 homolog A, coat complex II component protein-coding 5586 chr11 69048798 69048928 + 0 NA promoter-TSS (NM_139075) promoter-TSS (NM_139075) -19 NM_139075 219931 Hs.131851 NM_139075 ENSG00000162341 TPCN2 SHEP10|TPC2 two pore segment channel 2 protein-coding 1724 chr1 151909487 151909614 + 0 NA 5' UTR (NM_053055, exon 1 of 6) 5' UTR (NM_053055, exon 1 of 6) 335 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 23698 chr5 170211725 170211749 + 0 NA Intergenic Charlie8|DNA|hAT-Charlie -12596 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 6835 chr12 31749329 31749482 + 0 NA Intergenic LTR8B|LTR|ERV1 -20231 NM_001278412 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 3965 chr10 79068842 79068990 + 0 NA promoter-TSS (NM_020338) promoter-TSS (NM_020338) -119 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger MIZ-type containing 1 protein-coding 25986 chr7 31408517 31408621 + 0 NA Intergenic Intergenic -67645 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 2148 chr1 179954649 179954753 + 0 NA promoter-TSS (NM_014810) promoter-TSS (NM_014810) -72 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 27731 chr8 41221487 41221583 + 0 NA Intergenic Intergenic 49608 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 8699 chr14 22589302 22589334 + 0 NA promoter-TSS (NM_001344) promoter-TSS (NM_001344) -81 NM_001344 1603 Hs.82890 NM_001344 ENSG00000129562 DAD1 OST2 defender against cell death 1 protein-coding 18150 chr20 48620613 48620747 + 0 NA Intergenic Intergenic 207203 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 17052 chr2 213239087 213239191 + 0 NA Intergenic Intergenic 45070 NR_144752 100130451 Hs.608433 NM_001242575 LOC100130451 - uncharacterized LOC100130451 protein-coding 29708 chr9 100598781 100598850 + 0 NA Intergenic CpG 20736 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 MURC CAVIN4|cavin-4 muscle related coiled-coil protein protein-coding 6019 chr11 107565658 107565762 + 0 NA promoter-TSS (NM_001301010) promoter-TSS (NM_001301010) 25 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9 alkB homolog 8, tRNA methyltransferase protein-coding 29075 chr9 35518246 35518350 + 0 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) -20334 NM_001135999 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin RUN and SH3 domain containing 2 protein-coding 11027 chr16 11851520 11851624 + 0 NA promoter-TSS (NM_015659) promoter-TSS (NM_015659) 13 NM_015659 26156 Hs.401842 NM_015659 ENSG00000171490 RSL1D1 CSIG|L12|PBK1|UTP30 ribosomal L1 domain containing 1 protein-coding 22794 chr5 81171897 81172001 + 0 NA intron (NM_006909, intron 17 of 26) intron (NM_006909, intron 17 of 26) -61371 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 28091 chr8 80937529 80937633 + 0 NA Intergenic L2c|LINE|L2 -62800 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 22291 chr5 17249349 17249453 + 0 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 31840 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 53 chr1 3454463 3454567 + 0 NA promoter-TSS (NM_014448) promoter-TSS (NM_014448) -68 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 2925 chr1 230186265 230186426 + 0 NA intron (NM_001291866, intron 2 of 15) intron (NM_001291866, intron 2 of 15) 119150 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 19479 chr3 48685711 48685765 + 0 NA exon (NM_184231, exon 1 of 13) exon (NM_184231, exon 1 of 13) 195 NM_016453 51517 Hs.655006 NM_016453 ENSG00000213672 NCKIPSD AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH NCK interacting protein with SH3 domain protein-coding 16169 chr2 113157322 113157452 + 0 NA Intergenic CpG -16596 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 5591 chr11 69301802 69301851 + 0 NA Intergenic Intergenic 7688 NM_001300924 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 30511 chrX 14673863 14673967 + 0 NA intron (NM_002063, intron 7 of 8) intron (NM_002063, intron 7 of 8) 144617 NM_002063 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 29197 chr9 71806947 71807092 + 0 NA Intergenic Intergenic -38135 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 6724 chr12 21501649 21501754 + 0 NA promoter-TSS (NM_002907) promoter-TSS (NM_002907) -32 NM_002907 5965 Hs.235069 NM_002907 ENSG00000004700 RECQL RECQL1|RecQ1 RecQ like helicase protein-coding 5905 chr11 95453848 95454046 + 0 NA Intergenic Intergenic -221406 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 21833 chr4 139888118 139888189 + 0 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 222385 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13428 chr18 34979212 34979232 + 0 NA intron (NM_001143827, intron 1 of 7) intron (NM_001143827, intron 1 of 7) 978 NM_001143827 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 13015 chr17 75700602 75700706 + 0 NA intron (NM_001301839, intron 4 of 9) intron (NM_001301839, intron 4 of 9) -20674 NM_001005731 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 24422 chr6 33621228 33621362 + 0 NA promoter-TSS (NM_002224) promoter-TSS (NM_002224) -84 NM_002224 3710 Hs.65758 NM_002224 ENSG00000096433 ITPR3 IP3R|IP3R3 inositol 1,4,5-trisphosphate receptor type 3 protein-coding 2392 chr1 202018613 202018635 + 0 NA Intergenic Intergenic 8062 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 8526 chr13 102705258 102705362 + 0 NA Intergenic Intergenic -10789 NM_001010977 196541 Hs.508623 NM_001010977 ENSG00000139780 METTL21C C13orf39 methyltransferase like 21C protein-coding 12902 chr17 68512291 68512435 + 0 NA promoter-TSS (NM_001276289) promoter-TSS (NM_001276289) -16 NM_001276289 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 3313 chr10 14185645 14185749 + 0 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 111413 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 27811 chr8 52008547 52008725 + 0 NA Intergenic Intergenic -109450 NM_001286783 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 20056 chr3 124600248 124600397 + 0 NA intron (NM_001322999, intron 1 of 14) intron (NM_001322999, intron 1 of 14) 15663 NM_001323001 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 17168 chr2 223613158 223613361 + 0 NA Intergenic Intergenic -10760 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 4135 chr10 96130545 96130649 + 0 NA promoter-TSS (NM_001330734) promoter-TSS (NM_001330734) -25 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 20400 chr3 150743763 150743867 + 0 NA intron (NM_005067, intron 1 of 1) intron (NM_005067, intron 1 of 1) -4830 NR_121657 101928105 NR_121657 LOC101928105 - uncharacterized LOC101928105 ncRNA 28038 chr8 73972356 73972448 + 0 NA promoter-TSS (NM_005648) promoter-TSS (NM_005648) -115 NM_001204860 6921 Hs.533437 NM_005648 ENSG00000154582 ELOC SIII|TCEB1 elongin C protein-coding 13654 chr18 59402593 59402697 + 0 NA Intergenic Intergenic -43369 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 29600 chr9 95018683 95018761 + 0 NA intron (NM_001193329, intron 12 of 15) intron (NM_001193329, intron 12 of 15) -46628 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 24849 chr6 82144296 82144380 + 0 NA Intergenic Intergenic 103416 NM_015525 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 24077 chr6 13795169 13795323 + 0 NA intron (NM_001031713, intron 6 of 8) intron (NM_001031713, intron 6 of 8) 19314 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 12726 chr17 55584100 55584204 + 0 NA Intergenic MIR|SINE|MIR 138712 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 5633 chr11 72793724 72793857 + 0 NA promoter-TSS (NM_006645) promoter-TSS (NM_006645) -85 NM_006645 10809 Hs.188606 NM_006645 ENSG00000214530 STARD10 CGI-52|NY-CO-28|PCTP2|SDCCAG28 StAR related lipid transfer domain containing 10 protein-coding 19855 chr3 111311072 111311135 + 0 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -230976 NR_134917 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 10647 chr15 88623239 88623343 + 0 NA intron (NM_022767, intron 1 of 3) intron (NM_022767, intron 1 of 3) 1995 NM_022767 64782 Hs.436102 NM_022767 ENSG00000181026 AEN ISG20L1|pp12744 apoptosis enhancing nuclease protein-coding 20228 chr3 136984900 136985052 + 0 NA intron (NM_144717, intron 3 of 6) intron (NM_144717, intron 3 of 6) 27111 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 15176 chr2 24360472 24360508 + 0 NA promoter-TSS (NM_006277) promoter-TSS (NM_006277) 38 NM_147152 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 13777 chr18 74291262 74291401 + 0 NA intron (NM_001914, intron 1 of 5) CpG 685 NM_001914 1528 Hs.465413 NM_001914 ENSG00000166347 CYB5A CYB5|MCB5 cytochrome b5 type A protein-coding 26123 chr7 41698943 41699047 + 0 NA intron (NR_027119, intron 1 of 2) intron (NR_027119, intron 1 of 2) 4113 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin beta A subunit protein-coding 3916 chr10 74917576 74917680 + 0 NA intron (NR_134476, intron 1 of 1) L2c|LINE|L2 4842 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 23390 chr5 142108709 142108759 + 0 NA promoter-TSS (NM_030571) promoter-TSS (NM_030571) -25 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 10015 chr15 45023097 45023225 + 0 NA promoter-TSS (NR_034039) promoter-TSS (NR_034039) 57 NM_003104 6652 Hs.878 NM_003104 ENSG00000140263 SORD HEL-S-95n|SORD1 sorbitol dehydrogenase protein-coding 276 chr1 19011115 19011261 + 0 NA Intergenic Intergenic -54856 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 24098 chr6 15663008 15663112 + 0 NA promoter-TSS (NM_032122) promoter-TSS (NM_032122) -2 NM_001271669 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 12141 chr17 16438710 16438728 + 0 NA promoter-TSS (NR_027179) promoter-TSS (NR_027179) -268 NR_045028 125144 Hs.368934 NM_152350 ENSG00000175061 LRRC75A-AS1 C17orf45|C17orf76-AS1|FAM211A-AS1|NCRNA00188|TSAP19 LRRC75A antisense RNA 1 ncRNA 6006 chr11 106368870 106368924 + 0 NA Intergenic Intergenic 117490 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 6376 chr11 131033181 131033276 + 0 NA Intergenic Intergenic -116741 NM_001347925 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 2465 chr1 204494643 204494768 + 0 NA Intergenic CpG -4359 NM_002646 5287 Hs.497487 NM_002646 ENSG00000133056 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding 11894 chr17 1516665 1516839 + 0 NA promoter-TSS (NR_028514) promoter-TSS (NR_028514) 136 NM_016532 51763 Hs.632238 NM_016532 ENSG00000132376 INPP5K PPS|SKIP inositol polyphosphate-5-phosphatase K protein-coding 3523 chr10 31318357 31318415 + 0 NA promoter-TSS (NM_001323638) promoter-TSS (NM_001323638) -109 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 25461 chr6 163634693 163634827 + 0 NA Intergenic Intergenic 36724 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 14849 chr19 57527199 57527353 + 0 NA promoter-TSS (NM_001199295) promoter-TSS (NM_001199295) -49 NM_001199295 256051 Hs.744289 NM_153263 ENSG00000121406 ZNF549 - zinc finger protein 549 protein-coding 13826 chr18 80034355 80034391 + 0 NA promoter-TSS (NM_001171967) promoter-TSS (NM_001171967) 27 NM_024805 79863 Hs.728931 NM_024805 ENSG00000101546 RBFA C18orf22|HsT169 ribosome binding factor A (putative) protein-coding 9183 chr14 63641790 63641803 + 0 NA 5' UTR (NM_001258272, exon 1 of 3) 5' UTR (NM_001258272, exon 1 of 3) 127 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 25538 chr7 1194026 1194128 + 0 NA Intergenic Intergenic 33292 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 9072 chr14 55807122 55807257 + 0 NA Intergenic Intergenic -10515 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 14546 chr19 45326212 45326399 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -3328 NM_001824 1158 Hs.334347 NM_001824 ENSG00000104879 CKM CKMM|M-CK creatine kinase, M-type protein-coding 26401 chr7 73734880 73735050 + 0 NA promoter-TSS (NR_026690) promoter-TSS (NR_026690) -104 NR_026690 171022 Hs.650513 NR_026690 ENSG00000225969 ABHD11-AS1 LINC00035|NCRNA00035|WBSCR26 ABHD11 antisense RNA 1 (tail to tail) ncRNA 8686 chr14 21437284 21437405 + 0 NA promoter-TSS (NM_020920) promoter-TSS (NM_020920) -46 NM_020920 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 21885 chr4 147684156 147684286 + 0 NA promoter-TSS (NM_001304458) promoter-TSS (NM_001304458) 9 NM_001304458 90826 Hs.591692 NM_138364 ENSG00000164169 PRMT9 PRMT10 protein arginine methyltransferase 9 protein-coding 4124 chr10 95561350 95561533 + 0 NA promoter-TSS (NM_001290295) promoter-TSS (NM_001290295) -21 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 27966 chr8 66176975 66177065 + 0 NA exon (NM_000756, exon 2 of 2) exon (NM_000756, exon 2 of 2) 1625 NM_000756 1392 Hs.75294 NM_000756 ENSG00000147571 CRH CRF|CRH1 corticotropin releasing hormone protein-coding 26190 chr7 45435981 45436085 + 0 NA Intergenic L1MEf|LINE|L1 -138107 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 22899 chr5 94618519 94618646 + 0 NA promoter-TSS (NM_032290) promoter-TSS (NM_032290) 22 NM_173665 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 12789 chr17 59829383 59829598 + 0 NA intron (NM_030938, intron 10 of 11) intron (NM_030938, intron 10 of 11) -11776 NR_029493 406991 Hs.444569 NR_029493 ENSG00000062716 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 18500 chr21 34807584 34807688 + 0 NA intron (NM_001001890, intron 4 of 5) intron (NM_001001890, intron 4 of 5) 61811 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 15304 chr2 31012538 31012617 + 0 NA intron (NM_001329097, intron 1 of 12) HAL1b|LINE|L1 117063 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 4985 chr11 19680261 19680407 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -33001 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 26130 chr7 42097788 42097892 + 0 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 139179 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 21398 chr4 56976887 56977058 + 0 NA exon (NM_032313, exon 1 of 7) exon (NM_032313, exon 1 of 7) 688 NM_032313 84273 Hs.8715 NM_032313 ENSG00000084092 NOA1 C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1 nitric oxide associated 1 protein-coding 2986 chr1 234523649 234523753 + 0 NA Intergenic Intergenic 8078 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 22104 chr4 185143139 185143314 + 0 NA promoter-TSS (NM_001151) promoter-TSS (NM_001151) -37 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 12923 chr17 71189310 71189333 + 0 NA intron (NR_104152, intron 1 of 3) intron (NR_104152, intron 1 of 3) 12858 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 26249 chr7 48875421 48875551 + 0 NA Intergenic Intergenic -49075 NR_003595 168448 Hs.567757 NM_152627 CDC14C CDC14B2|CDC14Bretro|CDC14CP cell division cycle 14C, pseuodgene pseudo 27655 chr8 32260021 32260125 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -180673 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 27802 chr8 49874958 49875037 + 0 NA Intergenic MER67A|LTR|ERV1 -34729 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 4865 chr11 13216467 13216616 + 0 NA Intergenic Intergenic -61186 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 3558 chr10 33509275 33509429 + 0 NA Intergenic Intergenic -174447 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 3294 chr10 12586864 12586968 + 0 NA intron (NM_153498, intron 2 of 10) intron (NM_153498, intron 2 of 10) 8163 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 8020 chr13 27450433 27450590 + 0 NA promoter-TSS (NM_001166262) promoter-TSS (NM_001166262) 91 NM_001166263 219402 Hs.534582 NM_152912 ENSG00000122033 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 4307 chr10 104424798 104424902 + 0 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 55425 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LOC101927523 - uncharacterized LOC101927523 ncRNA 23271 chr5 135834591 135834695 + 0 NA promoter-TSS (NM_145282) promoter-TSS (NM_145282) -33 NM_145282 153328 Hs.412418 NM_145282 ENSG00000145832 SLC25A48 - solute carrier family 25 member 48 protein-coding 27476 chr8 19134600 19134704 + 0 NA Intergenic Intergenic 110870 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 25458 chr6 163392616 163392721 + 0 NA Intergenic Intergenic 21282 NR_037593 100526820 Hs.644159 NR_037593 ENSG00000270419 CAHM LINC00468 colon adenocarcinoma hypermethylated (non-protein coding) ncRNA 14115 chr19 11381346 11381439 + 0 NA intron (NM_000121, intron 4 of 7) CpG-13730 2950 NM_000121 2057 Hs.631624 NM_000121 ENSG00000187266 EPOR EPO-R erythropoietin receptor protein-coding 27104 chr7 139483792 139483851 + 0 NA promoter-TSS (NM_198508) promoter-TSS (NM_198508) -110 NM_198508 346689 Hs.17572 NM_198508 ENSG00000188883 KLRG2 CLEC15B killer cell lectin like receptor G2 protein-coding 17348 chr2 237572058 237572206 + 0 NA Intergenic Intergenic 5558 NM_015893 51052 Hs.247710 NM_015893 ENSG00000071677 PRLH PRH|PRRP prolactin releasing hormone protein-coding 1184 chr1 84427641 84427789 + 0 NA Intergenic Intergenic 19364 NM_058248 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 29309 chr9 77808905 77809009 + 0 NA intron (NM_002072, intron 3 of 6) intron (NM_002072, intron 3 of 6) -160641 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 18145 chr20 48295636 48295671 + 0 NA Intergenic Intergenic -64258 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 9085 chr14 57390367 57390577 + 0 NA promoter-TSS (NM_001011713) promoter-TSS (NM_001011713) -81 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 7796 chr12 122226003 122226107 + 0 NA promoter-TSS (NM_001278304) promoter-TSS (NM_001278304) -205 NM_001278304 56616 Hs.169611 NM_019887 ENSG00000184047 DIABLO DFNA64|SMAC diablo IAP-binding mitochondrial protein protein-coding 6046 chr11 110194507 110194604 + 0 NA intron (NM_001260493, intron 15 of 15) intron (NM_001260493, intron 15 of 15) 101194 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 9857 chr15 34366405 34366500 + 0 NA intron (NM_153613, intron 1 of 13) intron (NM_153613, intron 1 of 13) 742 NM_153613 254531 Hs.352614 NM_153613 ENSG00000176454 LPCAT4 AGPAT7|AYTL3|LPAAT-eta|LPEAT2 lysophosphatidylcholine acyltransferase 4 protein-coding 21290 chr4 38161022 38161126 + 0 NA Intergenic L2c|LINE|L2 41120 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 9803 chr15 29821489 29821623 + 0 NA promoter-TSS (NM_001301026).2 promoter-TSS (NM_001301026).2 -8 NM_001301026 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 7590 chr12 106780179 106780283 + 0 NA intron (NM_001330146, intron 1 of 8) intron (NM_001330146, intron 1 of 8) -5400 NR_040246 100287944 Hs.742087 NR_040246 ENSG00000257545 LOC100287944 - uncharacterized LOC100287944 ncRNA 8597 chr13 109862777 109862926 + 0 NA Intergenic Intergenic -76284 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 20120 chr3 129226544 129226648 + 0 NA Intergenic Intergenic -23014 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 13380 chr18 30987515 30987699 + 0 NA Intergenic Intergenic 55208 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 26600 chr7 92934270 92934374 + 0 NA Intergenic Intergenic -97695 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 7977 chr13 24160672 24160824 + 0 NA promoter-TSS (NM_001166271) promoter-TSS (NM_001166271) 32 NM_153023 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 11085 chr16 19167702 19167897 + 0 NA promoter-TSS (NM_016524) promoter-TSS (NM_016524) -35 NM_001330509 51760 Hs.258326 NM_016524 ENSG00000103528 SYT17 sytXVII synaptotagmin 17 protein-coding 18369 chr20 61185312 61185416 + 0 NA Intergenic Intergenic -67062 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 9473 chr14 81330828 81330932 + 0 NA intron (NM_001256430, intron 5 of 7) intron (NM_001256430, intron 5 of 7) 96332 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 7555 chr12 103930122 103930281 + 0 NA promoter-TSS (NR_027249) promoter-TSS (NR_027249) 10 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 23213 chr5 132427610 132427708 + 0 NA intron (NR_045116, intron 2 of 3) intron (NR_045116, intron 2 of 3) 16886 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 21480 chr4 77921815 77921919 + 0 NA intron (NM_020236, intron 7 of 8) Charlie4z|DNA|hAT-Charlie 59216 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 12057 chr17 7857508 7857651 + 0 NA promoter-TSS (NM_144607) promoter-TSS (NM_144607) -148 NM_144607 124637 Hs.27475 NM_144607 ENSG00000182224 CYB5D1 - cytochrome b5 domain containing 1 protein-coding 31001 chrX 119236233 119236377 + 0 NA promoter-TSS (NM_001282621) promoter-TSS (NM_001282621) 60 NM_001282621 10857 Hs.90061 NM_006667 ENSG00000101856 PGRMC1 HPR6.6|MPR progesterone receptor membrane component 1 protein-coding 6170 chr11 118791814 118791918 + 0 NA promoter-TSS (NM_001257191) promoter-TSS (NM_001257191) -603 NM_004397 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 16643 chr2 170973406 170973612 + 0 NA Intergenic CpG 44983 NM_015530 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 3342 chr10 16644324 16644453 + 0 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -122383 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 30009 chr9 119453758 119453862 + 0 NA Intergenic AluJb|SINE|Alu -84349 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 23879 chr6 2434203 2434325 + 0 NA Intergenic Intergenic 188511 NR_046229 100508120 Hs.188825 NR_046229 GMDS-AS1 - GMDS antisense RNA 1 (head to head) ncRNA 15571 chr2 55269200 55269346 + 0 NA promoter-TSS (NM_001321002) promoter-TSS (NM_001321002) -25 NM_001321002 4528 Hs.149894 NM_002453 ENSG00000085760 MTIF2 - mitochondrial translational initiation factor 2 protein-coding 13394 chr18 31447687 31447791 + 0 NA promoter-TSS (NM_001944) promoter-TSS (NM_001944) -30 NM_001944 1830 Hs.1925 NM_001944 ENSG00000134757 DSG3 CDHF6|PVA desmoglein 3 protein-coding 30373 chr9 136902507 136902611 + 0 NA intron (NM_021138, intron 4 of 10) intron (NM_021138, intron 4 of 10) 15826 NR_039697 100616480 NR_039697 ENSG00000266507 MIR4479 - microRNA 4479 ncRNA 27389 chr8 11413830 11413949 + 0 NA intron (NR_026814, intron 3 of 6) intron (NR_026814, intron 3 of 6) 45487 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 1298 chr1 91732655 91732742 + 0 NA intron (NM_001195683, intron 5 of 16) intron (NM_001195683, intron 5 of 16) 153581 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 14032 chr19 8343269 8343449 + 0 NA promoter-TSS (NM_198471) promoter-TSS (NM_198471) -97 NM_198471 256949 Hs.745036 NM_198471 ENSG00000186994 KANK3 ANKRD47 KN motif and ankyrin repeat domains 3 protein-coding 20545 chr3 159988688 159988697 + 0 NA promoter-TSS (NM_000882) promoter-TSS (NM_000882) -144 NM_000882 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 18370 chr20 61329305 61329409 + 0 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 76931 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 30748 chrX 54044701 54044805 + 0 NA promoter-TSS (NM_001184897) promoter-TSS (NM_001184897) 383 NM_001184896 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 15463 chr2 45009532 45009657 + 0 NA promoter-TSS (NM_016932) promoter-TSS (NM_016932) -191 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 22913 chr5 95878727 95878831 + 0 NA Intergenic Intergenic 26547 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 11249 chr16 30923285 30923420 + 0 NA promoter-TSS (NR_024348) promoter-TSS (NR_024348) -83 NR_024348 283932 Hs.711535 NM_175901 ENSG00000260852 FBXL19-AS1 NCRNA00095 FBXL19 antisense RNA 1 (head to head) ncRNA 17724 chr20 19884866 19884955 + 0 NA Intergenic Intergenic -1611 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 7468 chr12 96219875 96220014 + 0 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 25562 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ELK3, ETS transcription factor protein-coding 30405 chrUn_GL000216v2 1956 2105 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 5393 chr11 62856005 62856121 + 0 NA promoter-TSS (NR_003098) promoter-TSS (NR_003098) 51 NM_002394 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 985 chr1 61453243 61453430 + 0 NA intron (NM_001134673, intron 10 of 10) intron (NM_001134673, intron 10 of 10) -199818 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 22051 chr4 177442474 177442474 + 0 NA promoter-TSS (NM_000027) promoter-TSS (NM_000027) 29 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 19000 chr22 45247158 45247251 + 0 NA Intergenic AluSx|SINE|Alu -6435 NM_001009880 23313 Hs.592207 NM_015264 ENSG00000100364 KIAA0930 C22orf9|LSC3 KIAA0930 protein-coding 754 chr1 43270584 43270688 + 0 NA 5' UTR (NM_001320244, exon 2 of 4) 5' UTR (NM_001320244, exon 2 of 4) 642 NM_001320244 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 28150 chr8 87975171 87975275 + 0 NA Intergenic AluJo|SINE|Alu -101155 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 8248 chr13 48532776 48532935 + 0 NA intron (NM_001268, intron 1 of 14) CpG 401 NM_001268 1102 Hs.652712 NM_001268 ENSG00000136161 RCBTB2 CHC1L|RLG RCC1 and BTB domain containing protein 2 protein-coding 27996 chr8 70315728 70315832 + 0 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 87475 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 22978 chr5 107337352 107337499 + 0 NA Intergenic Intergenic -326411 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 19988 chr3 119498391 119498520 + 0 NA promoter-TSS (NM_016589) promoter-TSS (NM_016589) -66 NM_016589 51300 Hs.477287 NM_016589 ENSG00000113845 TIMMDC1 C3orf1 translocase of inner mitochondrial membrane domain containing 1 protein-coding 23640 chr5 160165238 160165352 + 0 NA Intergenic Intergenic -22072 NM_001130958 2172 Hs.519719 NM_001445 ENSG00000170231 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6 protein-coding 10797 chr15 99455049 99455187 + 0 NA Intergenic Intergenic -110810 NM_001130927 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 21003 chr3 193834669 193834823 + 0 NA Intergenic Intergenic 159492 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 16833 chr2 190844593 190844697 + 0 NA Intergenic Intergenic -36176 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 28425 chr8 109607942 109608050 + 0 NA promoter-TSS (NM_001330596) promoter-TSS (NM_001330596) 66 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 10226 chr15 60520143 60520283 + 0 NA non-coding (NR_120339, exon 4 of 6) non-coding (NR_120339, exon 4 of 6) 41035 NR_120342 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 8467 chr13 97256510 97256614 + 0 NA intron (NM_207304, intron 1 of 6) intron (NM_207304, intron 1 of 6) 34266 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 22498 chr5 51495718 51495822 + 0 NA Intergenic Intergenic -112438 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 28703 chr8 131856893 131857059 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR -47112 NR_136615 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 28022 chr8 73346499 73346623 + 0 NA intron (NR_125388, intron 1 of 5) intron (NR_125388, intron 1 of 5) 9900 NR_125388 101926926 Hs.640090 NR_125388 ENSG00000250295 RDH10-AS1 - RDH10 antisense RNA 1 ncRNA 23147 chr5 126776891 126776937 + 0 NA promoter-TSS (NM_001198557) promoter-TSS (NM_001198557) -239 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 10747 chr15 93829636 93829740 + 0 NA Intergenic Intergenic -26872 NR_120321 101927153 Hs.371900 NR_120321 LOC101927153 - uncharacterized LOC101927153 ncRNA 9653 chr14 99481203 99481355 + 0 NA promoter-TSS (NM_032233) promoter-TSS (NM_032233) -123 NM_001099402 8812 Hs.510409 NM_003858 ENSG00000090061 CCNK CPR4 cyclin K protein-coding 15476 chr2 45919961 45920101 + 0 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 268127 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 7122 chr12 56151701 56151805 + 0 NA promoter-TSS (NM_001199629) promoter-TSS (NM_001199629) -667 NM_002475 140465 Hs.632731 NM_002475 ENSG00000196465 MYL6B MLC1SA myosin light chain 6B protein-coding 18810 chr22 31750050 31750198 + 0 NA promoter-TSS (NM_173566) promoter-TSS (NM_173566) 10 NM_173566 253143 Hs.438906 NM_173566 ENSG00000183530 PRR14L C22orf30 proline rich 14 like protein-coding 524 chr1 31422744 31422890 + 0 NA intron (NM_001199039, intron 2 of 10) intron (NM_001199039, intron 2 of 10) 9004 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 9185 chr14 63664071 63664251 + 0 NA Intergenic MER52A|LTR|ERV1 -22238 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 2176 chr1 181325167 181325238 + 0 NA Intergenic Intergenic 88814 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 10928 chr16 3457978 3458033 + 0 NA promoter-TSS (NM_001317097) promoter-TSS (NM_001317097) 20 NM_001317097 79903 Hs.513296 NM_024845 ENSG00000122390 NAA60 HAT4|NAT15 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 9689 chr14 101948091 101948257 + 0 NA Intergenic CpG -16354 NM_001376 1778 Hs.614080 NM_001376 ENSG00000197102 DYNC1H1 CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein cytoplasmic 1 heavy chain 1 protein-coding 7235 chr12 67268792 67268886 + 0 NA promoter-TSS (NM_001329675) promoter-TSS (NM_001329675) -442 NM_001329674 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 15868 chr2 80889067 80889177 + 0 NA Intergenic LTR40c|LTR|ERVL 575743 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CT114|CTNR catenin alpha 2 protein-coding 28389 chr8 105683188 105683292 + 0 NA intron (NM_012082, intron 5 of 7) intron (NM_012082, intron 5 of 7) 364321 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 10978 chr16 8716699 8716773 + 0 NA intron (NM_000663, intron 1 of 15) intron (NM_000663, intron 1 of 15) 3767 NM_000663 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 17446 chr20 1503734 1503901 + 0 NA Intergenic Intergenic -12230 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 10904 chr16 2874934 2875079 + 0 NA Intergenic Intergenic -8189 NM_001142499 114984 Hs.534525 NM_138439 ENSG00000162076 FLYWCH2 - FLYWCH family member 2 protein-coding 3418 chr10 23315041 23315145 + 0 NA Intergenic MamSINE1|SINE|tRNA-RTE 29750 NM_153714 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552|bA215C7.4 chromosome 10 open reading frame 67 protein-coding 28428 chr8 109644700 109644850 + 0 NA promoter-TSS (NM_001099753) promoter-TSS (NM_001099753) 47 NM_001099753 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 8498 chr13 99200598 99200702 + 0 NA promoter-TSS (NM_177967) promoter-TSS (NM_177967) 105 NR_036532 100289373 Hs.225914 NR_036531 ENSG00000228889 UBAC2-AS1 - UBAC2 antisense RNA 1 ncRNA 7470 chr12 96445882 96445986 + 0 NA Intergenic Intergenic -43637 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 24916 chr6 90398055 90398177 + 0 NA Intergenic Intergenic 85374 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 16863 chr2 196233127 196233292 + 0 NA intron (NM_020760, intron 21 of 28) intron (NM_020760, intron 21 of 28) -26815 NR_110225 101927482 Hs.191841 NR_110225 LOC101927482 - uncharacterized LOC101927482 ncRNA 30192 chr9 128656626 128656781 + 0 NA exon (NM_052844, exon 1 of 9) exon (NM_052844, exon 1 of 9) 147 NM_052844 89891 Hs.495240 NM_052844 ENSG00000119333 WDR34 DIC5|FAP133|SRTD11|bA216B9.3 WD repeat domain 34 protein-coding 11726 chr16 81568457 81568561 + 0 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) 34607 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 20823 chr3 184561539 184561619 + 0 NA promoter-TSS (NM_004443) promoter-TSS (NM_004443) -220 NM_004443 2049 Hs.2913 NM_004443 ENSG00000182580 EPHB3 EK2|ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 230 chr1 16352514 16352652 + 0 NA promoter-TSS (NM_018994) promoter-TSS (NM_018994) -92 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 11618 chr16 73768770 73768940 + 0 NA Intergenic Intergenic 382050 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 115 chr1 8397108 8397169 + 0 NA intron (NM_012102, intron 13 of 23) MIR|SINE|MIR 26549 NM_001042682 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 15799 chr2 72887354 72887418 + 0 NA promoter-TSS (NM_003124) promoter-TSS (NM_003124) 3 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) protein-coding 13868 chr19 1592962 1593071 + 0 NA promoter-TSS (NM_001281453) promoter-TSS (NM_001281453) -255 NM_001281453 53615 Hs.178728 NM_003926 ENSG00000071655 MBD3 - methyl-CpG binding domain protein 3 protein-coding 26967 chr7 127588341 127588445 + 0 NA promoter-TSS (NM_001662) promoter-TSS (NM_001662) 41 NM_001662 381 Hs.653202 NM_001662 ENSG00000004059 ARF5 - ADP ribosylation factor 5 protein-coding 15686 chr2 65566799 65566903 + 0 NA Intergenic Intergenic -134329 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 9400 chr14 75711950 75712046 + 0 NA intron (NM_015072, intron 9 of 31) intron (NM_015072, intron 9 of 31) 50790 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 11030 chr16 11976679 11976694 + 0 NA promoter-TSS (NM_032167) promoter-TSS (NM_032167) -48 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 10103 chr15 51981651 51981755 + 0 NA Intergenic Intergenic -9902 NM_001323903 123169 Hs.567662 NM_138792 ENSG00000166477 LEO1 RDL LEO1 homolog, Paf1/RNA polymerase II complex component protein-coding 2319 chr1 198607843 198607947 + 0 NA Intergenic Intergenic -31073 NR_052021 5788 Hs.654514 NM_002838 ENSG00000081237 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type C protein-coding 1072 chr1 67576080 67576111 + 0 NA Intergenic Intergenic -109082 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 24741 chr6 56938802 56938906 + 0 NA intron (NM_001144769, intron 2 of 96) MLT1H|LTR|ERVL-MaLR 15774 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 9846 chr15 33915877 33915981 + 0 NA intron (NM_020371, intron 2 of 5) L1PBa|LINE|L1 -52385 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 17059 chr2 214127702 214127806 + 0 NA intron (NR_047660, intron 13 of 14) intron (NR_047660, intron 13 of 14) -283814 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing protein 2-like protein-coding 14662 chr19 48811013 48811128 + 0 NA promoter-TSS (NM_001284325) promoter-TSS (NM_001284325) -7 NM_001164773 587 Hs.512670 NM_001190 ENSG00000105552 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino acid transaminase 2 protein-coding 1394 chr1 99645968 99646057 + 0 NA 5' UTR (NM_017734, exon 1 of 8) 5' UTR (NM_017734, exon 1 of 8) 137 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 17959 chr20 37096199 37096323 + 0 NA promoter-TSS (NM_002895) promoter-TSS (NM_002895) -46 NM_001323281 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 25859 chr7 23474312 23474426 + 0 NA Intergenic CpG -3993 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 19140 chr3 9792628 9792732 + 0 NA promoter-TSS (NM_001198780) promoter-TSS (NM_001198780) 132 NM_001198793 100526693 Hs.323342 NM_001198793 ENSG00000250151 ARPC4-TTLL3 - ARPC4-TTLL3 readthrough protein-coding 7570 chr12 104986225 104986333 + 0 NA promoter-TSS (NM_152318) promoter-TSS (NM_152318) -41 NM_152318 121053 Hs.295563 NM_152318 ENSG00000151131 C12orf45 - chromosome 12 open reading frame 45 protein-coding 21617 chr4 99711108 99711212 + 0 NA Intergenic Intergenic -105664 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 15219 chr2 27032824 27032932 + 0 NA promoter-TSS (NM_001083590) promoter-TSS (NM_001083590) -28 NM_001083590 54867 Hs.533934 NM_017727 ENSG00000119777 TMEM214 - transmembrane protein 214 protein-coding 26620 chr7 94632447 94632551 + 0 NA intron (NM_001346717, intron 1 of 9) intron (NM_001346717, intron 1 of 9) 23710 NM_001099400 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 17139 chr2 220619779 220619881 + 0 NA Intergenic Intergenic -713265 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 10207 chr15 59570480 59570521 + 0 NA Intergenic Intergenic -41283 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 7597 chr12 107093520 107093674 + 0 NA 5' UTR (NM_004075, exon 1 of 13) 5' UTR (NM_004075, exon 1 of 13) 260 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 21707 chr4 112231663 112231674 + 0 NA promoter-TSS (NM_018569) promoter-TSS (NM_018569) -71 NM_018569 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 5889 chr11 94776389 94776541 + 0 NA intron (NM_001301007, intron 1 of 11) L2|LINE|L2 8123 NM_130847 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 21894 chr4 149708900 149709004 + 0 NA Intergenic Intergenic -369322 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 3951 chr10 77899209 77899347 + 0 NA intron (NM_004747, intron 1 of 31).2 intron (NM_004747, intron 1 of 31).2 27312 NM_004747 9231 Hs.652690 NM_004747 ENSG00000151208 DLG5 LP-DLG|P-DLG5|PDLG discs large MAGUK scaffold protein 5 protein-coding 17973 chr20 37764489 37764537 + 0 NA intron (NM_030877, intron 5 of 15) MIRc|SINE|MIR 70558 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 18377 chr20 62122381 62122464 + 0 NA promoter-TSS (NM_144703) promoter-TSS (NM_144703) -39 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 17001 chr2 207806012 207806116 + 0 NA Intergenic AluJr|SINE|Alu -36645 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 16489 chr2 156182228 156182322 + 0 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 72656 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 27457 chr8 18425707 18425792 + 0 NA Intergenic MIR3|SINE|MIR 34504 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 8900 chr14 37122384 37122464 + 0 NA intron (NM_030631, intron 1 of 9) L2b|LINE|L2 -49602 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 24140 chr6 18352942 18353092 + 0 NA Intergenic L2c|LINE|L2 -34333 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 18046 chr20 43514378 43514482 + 0 NA promoter-TSS (NM_015478) promoter-TSS (NM_015478) -6 NM_015478 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 l(3)mbt-like 1 (Drosophila) protein-coding 12877 chr17 66509611 66509711 + 0 NA intron (NM_002737, intron 3 of 16) MLT2B4|LTR|ERVL -92807 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 31118 chrX 141405641 141405715 + 0 NA Intergenic Intergenic -97171 NR_037183 619455 Hs.590784 NR_037183 ENSG00000277215 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 ncRNA 9870 chr15 36334156 36334260 + 0 NA Intergenic Intergenic -245395 NM_001321756 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 28186 chr8 92758476 92758580 + 0 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 27532 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 25644 chr7 7099612 7099778 + 0 NA Intergenic Intergenic -2909 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 29422 chr9 85224796 85224900 + 0 NA Intergenic Intergenic 517181 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 19247 chr3 23005172 23005252 + 0 NA Intergenic Intergenic 197366 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 8018 chr13 27424538 27424615 + 0 NA promoter-TSS (NM_002097) promoter-TSS (NM_002097) 32 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 4642 chr10 133009370 133009466 + 0 NA Intergenic Intergenic 43884 NR_046231 399829 Hs.252872 NR_046231 ENSG00000240707 LINC01168 - long intergenic non-protein coding RNA 1168 ncRNA 26906 chr7 120950544 120950728 + 0 NA promoter-TSS (NM_198267) promoter-TSS (NM_198267) -127 NM_019071 54556 Hs.489811 NM_019071 ENSG00000071243 ING3 Eaf4|ING2|MEAF4|p47ING3 inhibitor of growth family member 3 protein-coding 4181 chr10 97889738 97889898 + 0 NA intron (NM_001206528, intron 11 of 14) intron (NM_001206528, intron 11 of 14) 39580 NM_001010917 401647 Hs.567524 NM_001010917 ENSG00000155265 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family member B protein-coding 12127 chr17 15659820 15659951 + 0 NA intron (NM_006470, intron 3 of 8) intron (NM_006470, intron 3 of 8) 22994 NM_006470 10626 Hs.123534 NM_006470 ENSG00000221926 TRIM16 EBBP tripartite motif containing 16 protein-coding 4126 chr10 95693973 95694122 + 0 NA promoter-TSS (NM_001143973) promoter-TSS (NM_001143973) 96 NM_001143973 26123 Hs.438991 NM_015631 ENSG00000119977 TCTN3 C10orf61|JBTS18|OFD4|TECT3 tectonic family member 3 protein-coding 27009 chr7 130668659 130668815 + 0 NA promoter-TSS (NM_001290033) promoter-TSS (NM_001290033) 21 NM_012133 26958 Hs.6421 NM_012133 ENSG00000158623 COPG2 2-COP|gamma-2-COP coatomer protein complex subunit gamma 2 protein-coding 20684 chr3 175270468 175270572 + 0 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) 576 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 12930 chr17 71519408 71519512 + 0 NA Intergenic Intergenic -317281 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 20472 chr3 156317566 156317670 + 0 NA intron (NM_001308222, intron 1 of 12) intron (NM_001308222, intron 1 of 12) 26581 NM_001308222 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 9541 chr14 90396810 90396914 + 0 NA promoter-TSS (NM_006888) promoter-TSS (NM_006888) -121 NM_006888 801 Hs.282410 NM_006888 ENSG00000198668 CALM1 CALML2|CAMI|CPVT4|DD132|LQT14|PHKD|caM calmodulin 1 protein-coding 5090 chr11 32088175 32088239 + 0 NA Intergenic Intergenic -2724 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 3800 chr10 68074697 68074801 + 0 NA intron (NM_015601, intron 1 of 24) CpG 597 NM_001278186 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 25804 chr7 20330582 20330733 + 0 NA promoter-TSS (NM_002214) promoter-TSS (NM_002214) -445 NM_002214 3696 Hs.592171 NM_002214 ENSG00000105855 ITGB8 - integrin subunit beta 8 protein-coding 15952 chr2 95076778 95076923 + 0 NA Intergenic CpG 44707 NM_001321995 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 14428 chr19 38831323 38831463 + 0 NA exon (NM_001398, exon 2 of 10) exon (NM_001398, exon 2 of 10) 464 NM_001398 1891 Hs.196176 NM_001398 ENSG00000104823 ECH1 HPXEL enoyl-CoA hydratase 1 protein-coding 6538 chr12 6873287 6873391 + 0 NA promoter-TSS (NM_001146316) promoter-TSS (NM_001146316) 18 NM_001319670 84727 Hs.479856 NM_032641 ENSG00000111671 SPSB2 GRCC9|SSB2 splA/ryanodine receptor domain and SOCS box containing 2 protein-coding 16319 chr2 130798106 130798151 + 0 NA Intergenic CpG 41837 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 27205 chr7 149239523 149239674 + 0 NA promoter-TSS (NM_012256) promoter-TSS (NM_012256) -53 NM_012256 7988 Hs.490510 NM_012256 ENSG00000170260 ZNF212 C2H2-150|ZNF182|ZNFC150 zinc finger protein 212 protein-coding 13626 chr18 57435250 57435408 + 0 NA promoter-TSS (NM_004852) promoter-TSS (NM_004852) -356 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 30277 chr9 131555801 131555905 + 0 NA Intergenic Intergenic -24578 NM_001135954 83549 Hs.9597 NM_031432 ENSG00000130717 UCK1 URK1 uridine-cytidine kinase 1 protein-coding 10682 chr15 90158174 90158385 + 0 NA Intergenic Intergenic -26641 NM_001324030 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 8839 chr14 34237110 34237214 + 0 NA Intergenic L1ME1|LINE|L1 225100 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 27635 chr8 29655513 29655548 + 0 NA Intergenic Intergenic 92579 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 20674 chr3 174129006 174129110 + 0 NA intron (NM_014932, intron 4 of 6) intron (NM_014932, intron 4 of 6) -208262 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 4584 chr10 126041947 126041997 + 0 NA 3' UTR (NM_001288975, exon 19 of 19) 3' UTR (NM_001288975, exon 19 of 19) -68699 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 16050 chr2 102240876 102241021 + 0 NA Intergenic Intergenic 53975 NM_003854 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 15656 chr2 64312420 64312538 + 0 NA Intergenic Intergenic -28280 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 1036 chr1 65066914 65066954 + 0 NA intron (NM_001321854, intron 1 of 25) CpG-1213 812 NM_001321853 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 24147 chr6 19269690 19269767 + 0 NA Intergenic L1M2c|LINE|L1 -89248 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 20175 chr3 133456083 133456187 + 0 NA promoter-TSS (NR_135278) promoter-TSS (NR_135278) -359 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 9298 chr14 69713264 69713417 + 0 NA 3' UTR (NM_014734, exon 6 of 6) 3' UTR (NM_014734, exon 6 of 6) -53747 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 15844 chr2 74887832 74887957 + 0 NA intron (NM_000189, intron 15 of 17) intron (NM_000189, intron 15 of 17) -21237 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 1265 chr1 88891522 88891640 + 0 NA promoter-TSS (NM_001514) promoter-TSS (NM_001514) 37 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 2065 chr1 170563127 170563218 + 0 NA Intergenic MamGypLTR1b|LTR|Gypsy -30563 NR_125958 101928650 Hs.676662 NR_125958 LOC101928650 - uncharacterized LOC101928650 ncRNA 23158 chr5 127934948 127935052 + 0 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 148074 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 15757 chr2 70136045 70136149 + 0 NA Intergenic Intergenic -10781 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 8832 chr14 34052712 34052816 + 0 NA Intergenic L2b|LINE|L2 -101686 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 20836 chr3 185253976 185254080 + 0 NA promoter-TSS (NR_106712) promoter-TSS (NR_106712) 70 NM_001166415 1962 Hs.429879 NM_001966 ENSG00000113790 EHHADH ECHD|FRTS3|L-PBE|LBFP|LBP|PBFE enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase protein-coding 23573 chr5 154296903 154297007 + 0 NA intron (NM_198321, intron 2 of 11) intron (NM_198321, intron 2 of 11) -50151 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 4527 chr10 122085524 122085628 + 0 NA exon (NM_001291876, exon 4 of 20) exon (NM_001291876, exon 4 of 20) -27463 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 4634 chr10 132407954 132408109 + 0 NA intron (NM_138499, intron 2 of 2) intron (NM_138499, intron 2 of 2) 10833 NM_001098637 170394 Hs.527751 NM_138499 ENSG00000171813 PWWP2B PWWP2|bA432J24.1|pp8607 PWWP domain containing 2B protein-coding 1196 chr1 84836220 84836324 + 0 NA intron (NM_012152, intron 2 of 2) AluJb|SINE|Alu 56941 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 7927 chr13 19601882 19601986 + 0 NA Intergenic CpG 14816 NR_046988 100874136 NR_046988 LINC00350 - long intergenic non-protein coding RNA 350 ncRNA 11430 chr16 57628545 57628668 + 0 NA 5' UTR (NM_001145771, exon 1 of 15) 5' UTR (NM_001145771, exon 1 of 15) 380 NM_001145771 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 239 chr1 16896162 16896252 + 0 NA TTS (NR_004400).2 TTS (NR_004400).2 227 NR_004408 26869 NR_004408 ENSG00000207513 RNU1-3 HSD4|RNU1G3 RNA, U1 small nuclear 3 snRNA 14334 chr19 30030287 30030453 + 0 NA Intergenic L1MB7|LINE|L1 88131 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1, prefoldin like chaperone protein-coding 10807 chr15 100111285 100111389 + 0 NA intron (NM_139057, intron 13 of 21) intron (NM_139057, intron 13 of 21) 230668 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 - ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 29854 chr9 110744991 110745048 + 0 NA intron (NM_001166280, intron 7 of 12) intron (NM_001166280, intron 7 of 12) 76248 NM_001166280 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS muscle associated receptor tyrosine kinase protein-coding 20647 chr3 171654948 171655039 + 0 NA intron (NM_002662, intron 21 of 26) intron (NM_002662, intron 21 of 26) 155501 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 - phospholipase D1 protein-coding 16070 chr2 105455769 105455833 + 0 NA Intergenic Intergenic -17028 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 8625 chr13 110908679 110908783 + 0 NA intron (NR_104586, intron 2 of 4) intron (NR_104586, intron 2 of 4) 6376 NR_104586 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 14678 chr19 49127991 49128129 + 0 NA exon (NM_003660, exon 2 of 30) exon (NM_003660, exon 2 of 30) 8671 NR_103842 8541 Hs.413748 NM_003660 ENSG00000177380 PPFIA3 LPNA3 PTPRF interacting protein alpha 3 protein-coding 269 chr1 18668847 18669014 + 0 NA intron (NM_002584, intron 4 of 7) intron (NM_002584, intron 4 of 7) 37924 NM_002584 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 363 chr1 23916925 23917048 + 0 NA Intergenic Intergenic -3659 NM_001841 1269 Hs.73037 NM_001841 ENSG00000188822 CNR2 CB-2|CB2|CX5 cannabinoid receptor 2 protein-coding 22008 chr4 170027333 170027377 + 0 NA promoter-TSS (NM_001301647) promoter-TSS (NM_001301647) -925 NM_001301647 9848 Hs.593942 NM_021647 ENSG00000198948 MFAP3L NYD-sp9 microfibrillar associated protein 3 like protein-coding 7961 chr13 23375551 23375562 + 0 NA promoter-TSS (NM_001278055) promoter-TSS (NM_001278055) -13 NM_001278055 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 4264 chr10 102713751 102713855 + 0 NA promoter-TSS (NM_178858) promoter-TSS (NM_178858) 630 NM_004311 403 Hs.182215 NM_004311 ENSG00000138175 ARL3 ARFL3 ADP ribosylation factor like GTPase 3 protein-coding 24613 chr6 44387523 44387696 + 0 NA promoter-TSS (NM_001253) promoter-TSS (NM_001253) 95 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 4573 chr10 125201250 125201354 + 0 NA Intergenic Intergenic -40241 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 14384 chr19 35931539 35931665 + 0 NA Intergenic CpG -5518 NM_024509 79414 Hs.143792 NM_024509 ENSG00000126243 LRFN3 FIGLER1|SALM4 leucine rich repeat and fibronectin type III domain containing 3 protein-coding 4140 chr10 96505553 96505699 + 0 NA intron (NM_012465, intron 1 of 20) MIR|SINE|MIR 8300 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 30343 chr9 135499712 135499790 + 0 NA promoter-TSS (NR_051967) promoter-TSS (NR_051967) 164 NM_144654 138162 Hs.414028 NM_144654 ENSG00000160345 C9orf116 PIERCE1|RbEST47 chromosome 9 open reading frame 116 protein-coding 12681 chr17 50661914 50661990 + 0 NA intron (NM_003786, intron 8 of 30) intron (NM_003786, intron 8 of 30) 27095 NM_003786 8714 Hs.463421 NM_003786 ENSG00000108846 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP binding cassette subfamily C member 3 protein-coding 26604 chr7 93232239 93232358 + 0 NA promoter-TSS (NM_001257998) promoter-TSS (NM_001257998) -42 NM_001257998 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50, EARP/GARPII complex subunit protein-coding 19293 chr3 29256290 29256394 + 0 NA Intergenic Intergenic 24597 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 27368 chr8 9225088 9225173 + 0 NA Intergenic Intergenic 36131 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 26406 chr7 73832323 73832401 + 0 NA 3' UTR (NM_001305, exon 1 of 1) 3' UTR (NM_001305, exon 1 of 1) 1499 NM_001305 1364 Hs.647036 NM_001305 ENSG00000189143 CLDN4 CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R claudin 4 protein-coding 17128 chr2 219597665 219597817 + 0 NA promoter-TSS (NM_052902) promoter-TSS (NM_052902) -110 NM_052902 114790 Hs.22410 NM_052902 ENSG00000144589 STK11IP LIP1|LKB1IP|STK11IP1 serine/threonine kinase 11 interacting protein protein-coding 11424 chr16 57392843 57393013 + 0 NA Intergenic Intergenic -11839 NM_002987 6361 Hs.546294 NM_002987 ENSG00000102970 CCL17 A-152E5.3|ABCD-2|SCYA17|TARC C-C motif chemokine ligand 17 protein-coding 21225 chr4 20840035 20840139 + 0 NA intron (NM_001035003, intron 2 of 7) MER68|LTR|ERVL 10581 NM_147181 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 16173 chr2 113241006 113241155 + 0 NA TTS (NR_047570) TTS (NR_047570) 4811 NR_015377 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 11244 chr16 30805532 30805661 + 0 NA Intergenic CpG -18377 NM_001080417 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 26453 chr7 76359271 76359406 + 0 NA promoter-TSS (NM_012479) promoter-TSS (NM_012479) -313 NM_012479 7532 Hs.744840 NM_012479 ENSG00000170027 YWHAG 14-3-3GAMMA|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma protein-coding 21978 chr4 165199872 165199976 + 0 NA Intergenic Intergenic -7694 NM_007246 11275 Hs.388668 NM_007246 ENSG00000109466 KLHL2 ABP-KELCH|MAV|MAYVEN kelch like family member 2 protein-coding 1449 chr1 108200344 108200448 + 0 NA promoter-TSS (NM_013386) promoter-TSS (NM_013386) -38 NM_013386 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1 solute carrier family 25 member 24 protein-coding 29062 chr9 34745096 34745200 + 0 NA Intergenic Intergenic -15610 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 28491 chr8 118415792 118415946 + 0 NA intron (NM_001101676, intron 3 of 4) intron (NM_001101676, intron 3 of 4) -205132 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 7855 chr12 124917220 124917452 + 0 NA Intergenic Intergenic 1789 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 14316 chr19 23395436 23395540 + 0 NA promoter-TSS (NM_001300951) promoter-TSS (NM_001300951) 72 NM_001300951 7644 Hs.58834 NM_003430 ENSG00000167232 ZNF91 HPF7|HTF10 zinc finger protein 91 protein-coding 9046 chr14 55027189 55027293 + 0 NA promoter-TSS (NM_007086) promoter-TSS (NM_007086) 115 NM_199421 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 2873 chr1 227764169 227764323 + 0 NA intron (NM_001323934, intron 3 of 4) intron (NM_001323934, intron 3 of 4) 28551 NM_001323934 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 16125 chr2 110741627 110741727 + 0 NA intron (NM_001142807, intron 1 of 17) intron (NM_001142807, intron 1 of 17) 9104 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase-like protein-coding 12952 chr17 72592777 72592907 + 0 NA promoter-TSS (NR_036488) promoter-TSS (NR_036488) -36 NR_137280 100499467 Hs.157726 NR_036488 LINC00673 HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 19846 chr3 109804844 109804948 + 0 NA Intergenic Intergenic 202068 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 28477 chr8 117946981 117947085 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 164786 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 21164 chr4 8534337 8534437 + 0 NA Intergenic MER4D|LTR|ERV1 -45850 NR_045511 27201 Hs.740355 NM_080819 ENSG00000155269 GPR78 - G protein-coupled receptor 78 protein-coding 14856 chr19 57769600 57769683 + 0 NA promoter-TSS (NM_001077426) promoter-TSS (NM_001077426) -11 NM_001204814 54807 Hs.625133 NM_017652 ENSG00000083828 ZNF586 - zinc finger protein 586 protein-coding 26348 chr7 66493606 66493669 + 0 NA promoter-TSS (NR_134573) promoter-TSS (NR_134573) 5 NR_134573 100289098 Hs.662276 NR_134570 ENSG00000237310 GS1-124K5.4 - uncharacterized LOC100289098 ncRNA 17414 chr20 297319 297499 + 0 NA promoter-TSS (NM_033089) promoter-TSS (NM_033089) -154 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 1798 chr1 154974397 154974556 + 0 NA promoter-TSS (NM_001202859) promoter-TSS (NM_001202859) 7 NM_001130041 6464 Hs.433795 NM_003029 ENSG00000160691 SHC1 SHC|SHCA SHC adaptor protein 1 protein-coding 18054 chr20 43955539 43955618 + 0 NA intron (NM_032883, intron 2 of 9) intron (NM_032883, intron 2 of 9) 9682 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 2535 chr1 208107987 208108080 + 0 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 136287 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 23562 chr5 153267671 153267716 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger -222831 NM_001258020 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 26914 chr7 121396291 121396395 + 0 NA promoter-TSS (NM_014888) promoter-TSS (NM_014888) 25 NM_014888 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 28463 chr8 116874747 116874851 + 0 NA promoter-TSS (NR_037404) promoter-TSS (NR_037404) 1 NR_037404 100500914 NR_037404 ENSG00000164754 MIR3610 mir-3610 microRNA 3610 ncRNA 2412 chr1 202456576 202456716 + 0 NA intron (NM_001331029, intron 14 of 24) intron (NM_001331029, intron 14 of 24) -6097 NM_032104 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 25890 chr7 25180289 25180393 + 0 NA promoter-TSS (NM_138811) promoter-TSS (NM_138811) -143 NM_138811 136895 Hs.122055 NM_138811 ENSG00000153790 C7orf31 - chromosome 7 open reading frame 31 protein-coding 18714 chr22 25236034 25236138 + 0 NA Intergenic Intergenic 16441 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 7116 chr12 56041738 56041890 + 0 NA promoter-TSS (NM_001029) promoter-TSS (NM_001029) -88 NM_001029 6231 Hs.447562 NM_001029 ENSG00000197728 RPS26 DBA10|S26 ribosomal protein S26 protein-coding 2017 chr1 167663080 167663215 + 0 NA intron (NM_001322923, intron 1 of 5) intron (NM_001322923, intron 1 of 5) 32910 NM_052862 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 29660 chr9 98072772 98072905 + 0 NA intron (NM_018946, intron 2 of 5) intron (NM_018946, intron 2 of 5) 16161 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 28236 chr8 95214162 95214266 + 0 NA intron (NR_046232, intron 1 of 2) intron (NR_046232, intron 1 of 2) 2160 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 10219 chr15 60374732 60374884 + 0 NA intron (NM_004039, intron 3 of 12) intron (NM_004039, intron 3 of 12) 23178 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 4031 chr10 87095342 87095458 + 0 NA promoter-TSS (NM_001318904) promoter-TSS (NM_001318904) 204 NM_019054 54537 Hs.500419 NM_019054 ENSG00000122376 FAM35A FAM35A1|bA163M19.1 family with sequence similarity 35 member A protein-coding 22743 chr5 76181237 76181336 + 0 NA intron (NM_001297716, intron 2 of 12) MER58A|DNA|hAT-Charlie 97872 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 20297 chr3 141841392 141841496 + 0 NA Intergenic Intergenic -35148 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 10188 chr15 58933815 58933907 + 0 NA promoter-TSS (NR_135042) promoter-TSS (NR_135042) -185 NM_001013843 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 3841 chr10 70405544 70405596 + 0 NA intron (NM_004096, intron 1 of 2) intron (NM_004096, intron 1 of 2) 1465 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 16032 chr2 101308668 101308805 + 0 NA promoter-TSS (NR_049881) promoter-TSS (NR_049881) -20 NM_173647 284996 Hs.142074 NM_173647 ENSG00000163162 RNF149 DNAPTP2 ring finger protein 149 protein-coding 8748 chr14 24114591 24114719 + 0 NA promoter-TSS (NR_028100) promoter-TSS (NR_028100) -42 NM_001163484 80344 Hs.525251 NM_025230 ENSG00000100897 DCAF11 GL014|PRO2389|WDR23 DDB1 and CUL4 associated factor 11 protein-coding 29696 chr9 99906861 99906965 + 0 NA promoter-TSS (NR_038853) promoter-TSS (NR_038853) 280 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 21280 chr4 34181441 34181592 + 0 NA Intergenic Intergenic -141623 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 13664 chr18 59847182 59847286 + 0 NA Intergenic MamRep4096|DNA|hAT-Tip100 -52726 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 12946 chr17 72465719 72465823 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 122960 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 27467 chr8 18957675 18957829 + 0 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 55934 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 19668 chr3 72848438 72848583 + 0 NA promoter-TSS (NM_018130) promoter-TSS (NM_018130) -63 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 11781 chr16 85011498 85011648 + 0 NA promoter-TSS (NM_001145548) promoter-TSS (NM_001145548) -38 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 29325 chr9 78668580 78668615 + 0 NA Intergenic Intergenic 371522 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 25566 chr7 2956943 2957033 + 0 NA intron (NM_001324281, intron 3 of 25) intron (NM_001324281, intron 3 of 25) 86957 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|PPBL caspase recruitment domain family member 11 protein-coding 14818 chr19 55476470 55476671 + 0 NA 5' UTR (NM_033113, exon 1 of 3) 5' UTR (NM_033113, exon 1 of 3) 238 NM_033113 89887 Hs.525209 NM_033113 ENSG00000197483 ZNF628 ZEC|Zfp628 zinc finger protein 628 protein-coding 18733 chr22 27134541 27134645 + 0 NA Intergenic MIRc|SINE|MIR -52923 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 8605 chr13 110226350 110226474 + 0 NA intron (NM_001303110, intron 2 of 24) intron (NM_001303110, intron 2 of 24) 80745 NM_001845 1282 Hs.17441 NM_001845 ENSG00000187498 COL4A1 BSVD|RATOR collagen type IV alpha 1 chain protein-coding 9879 chr15 36904332 36904486 + 0 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -17876 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 12678 chr17 50547076 50547209 + 0 NA promoter-TSS (NM_001258372) promoter-TSS (NM_001258372) 53 NM_001258372 64847 Hs.103147 NM_022827 ENSG00000006282 SPATA20 HEL-S-98|SSP411|Tisp78 spermatogenesis associated 20 protein-coding 8567 chr13 106535707 106535870 + 0 NA promoter-TSS (NM_004093) promoter-TSS (NM_004093) -748 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 5496 chr11 65859500 65859643 + 0 NA promoter-TSS (NM_025128) promoter-TSS (NM_025128) -830 NM_025128 80198 Hs.288798 NM_025128 ENSG00000172732 MUS81 SLX3 MUS81 structure-specific endonuclease subunit protein-coding 9031 chr14 54441317 54441464 + 0 NA promoter-TSS (NM_005776) promoter-TSS (NM_005776) 40 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 13609 chr18 54612314 54612368 + 0 NA Intergenic L2c|LINE|L2 21182 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 6794 chr12 27966969 27967118 + 0 NA intron (NM_198965, intron 3 of 4) intron (NM_198965, intron 3 of 4) 2918 NM_198966 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 23720 chr5 172314893 172315050 + 0 NA Intergenic Intergenic 29374 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 16045 chr2 101820685 101820845 + 0 NA intron (NM_145686, intron 3 of 30) AmnSINE1|SINE|5S-Deu-L2 122689 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 15996 chr2 98480116 98480249 + 0 NA intron (NM_004027, intron 1 of 25) intron (NM_004027, intron 1 of 25) 35324 NM_001134224 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 14739 chr19 51367525 51367629 + 0 NA intron (NM_152353, intron 2 of 3) CpG-15033 -1159 NM_001985 2109 Hs.348531 NM_001985 ENSG00000105379 ETFB FP585|MADD electron transfer flavoprotein beta subunit protein-coding 20152 chr3 130963952 130964147 + 0 NA exon (NM_001199181, exon 12 of 27) exon (NM_001199181, exon 12 of 27) -62801 NM_001321222 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 9863 chr15 34988342 34988448 + 0 NA promoter-TSS (NM_014106) promoter-TSS (NM_014106) -99 NM_014106 54989 Hs.744990 NM_014106 ENSG00000198146 ZNF770 PRO1914 zinc finger protein 770 protein-coding 9054 chr14 55191594 55191770 + 0 NA promoter-TSS (NM_014750) promoter-TSS (NM_014750) -4 NM_014750 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 8816 chr14 32584228 32584332 + 0 NA intron (NM_004274, intron 5 of 13) MER44B|DNA|TcMar-Tigger 255007 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 21065 chr3 197031576 197031740 + 0 NA Intergenic Intergenic -1842 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 29382 chr9 83425350 83425544 + 0 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) 42295 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 29810 chr9 108691720 108691824 + 0 NA Intergenic Intergenic 164223 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 20184 chr3 133822045 133822149 + 0 NA TTS (NM_021203) TTS (NM_021203) 38064 NM_021203 58477 Hs.12152 NM_021203 ENSG00000144867 SRPRB APMCF1 SRP receptor beta subunit protein-coding 8950 chr14 49620629 49620778 + 0 NA promoter-TSS (NM_002408) promoter-TSS (NM_002408) -18 NM_001001 6166 Hs.444749 NM_001001 ENSG00000165502 RPL36AL RPL36A ribosomal protein L36a like protein-coding 24981 chr6 107848406 107848443 + 0 NA Intergenic CpG -24107 NM_198081 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 sex comb on midleg-like 4 (Drosophila) protein-coding 24904 chr6 89081776 89081880 + 0 NA intron (NM_006813, intron 1 of 1) CpG 1118 NM_006813 10957 Hs.75969 NM_006813 ENSG00000146278 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline rich nuclear receptor coactivator 1 protein-coding 6138 chr11 117178699 117178865 + 0 NA promoter-TSS (NM_001040455) promoter-TSS (NM_001040455) -441 NM_001040455 51092 Hs.712144 NM_015996 ENSG00000149577 SIDT2 CGI-40 SID1 transmembrane family member 2 protein-coding 18741 chr22 27919448 27919552 + 0 NA promoter-TSS (NM_001284278) promoter-TSS (NM_001284278) 124 NR_026963 284900 Hs.602319 NR_026962 ENSG00000235954 TTC28-AS1 TTC28-AS|TTC28AS|dJ353E16.2 TTC28 antisense RNA 1 ncRNA 21999 chr4 169115995 169116140 + 0 NA intron (NM_020870, intron 10 of 11) L2a|LINE|L2 -105750 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 7006 chr12 51083546 51083677 + 0 NA promoter-TSS (NR_045072) promoter-TSS (NR_045072) 43 NR_045072 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 21183 chr4 11632553 11632657 + 0 NA Intergenic Intergenic -203692 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 7655 chr12 110614008 110614113 + 0 NA promoter-TSS (NM_001319682) promoter-TSS (NM_001319682) 33 NM_001082537 79600 Hs.211511 NM_024549 ENSG00000204852 TCTN1 JBTS13|TECT1 tectonic family member 1 protein-coding 17965 chr20 37332036 37332140 + 0 NA Intergenic Intergenic -12597 NM_005417 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 27790 chr8 48704502 48704583 + 0 NA Intergenic Intergenic 30769 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 18874 chr22 37777343 37777362 + 0 NA TTS (NM_001039141) TTS (NM_001039141) -27755 NM_005318 3005 Hs.745024 NM_005318 ENSG00000189060 H1F0 H10|H1FV H1 histone family member 0 protein-coding 19261 chr3 24238294 24238443 + 0 NA intron (NM_000461, intron 2 of 9) intron (NM_000461, intron 2 of 9) 87044 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 12698 chr17 51260394 51260511 + 0 NA promoter-TSS (NM_016001) promoter-TSS (NM_016001) -84 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18, small subunit processome component protein-coding 30232 chr9 129488681 129488761 + 0 NA promoter-TSS (NR_038955) promoter-TSS (NR_038955) 61 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 23415 chr5 143311622 143311726 + 0 NA intron (NM_001204265, intron 3 of 6) AluJr|SINE|Alu 92015 NM_000176 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 7641 chr12 110039157 110039303 + 0 NA 3' UTR (NM_033121, exon 15 of 15) 3' UTR (NM_033121, exon 15 of 15) 28465 NM_207435 400073 Hs.44817 NM_207435 ENSG00000174456 C12orf76 - chromosome 12 open reading frame 76 protein-coding 3107 chr1 244239552 244239656 + 0 NA Intergenic Intergenic -113031 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 21477 chr4 77820242 77820346 + 0 NA promoter-TSS (NM_144571) promoter-TSS (NM_144571) -904 NM_144571 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 19237 chr3 20040717 20040821 + 0 NA exon (NM_003884, exon 1 of 18) exon (NM_003884, exon 1 of 18) 737 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 404 chr1 25998143 25998306 + 0 NA promoter-TSS (NM_000437) promoter-TSS (NM_000437) -67 NM_000437 5051 Hs.477083 NM_000437 ENSG00000158006 PAFAH2 HSD-PLA2 platelet activating factor acetylhydrolase 2 protein-coding 25040 chr6 116060795 116060972 + 0 NA promoter-TSS (NM_002031) promoter-TSS (NM_002031) -125 NM_002031 2444 Hs.89426 NM_002031 ENSG00000111816 FRK GTK|PTK5|RAK fyn related Src family tyrosine kinase protein-coding 25877 chr7 24826312 24826431 + 0 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) 66250 NR_104111 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 14239 chr19 17303435 17303539 + 0 NA promoter-TSS (NM_024527) promoter-TSS (NM_024527) -14 NM_024527 79575 Hs.515664 NM_024527 ENSG00000127220 ABHD8 - abhydrolase domain containing 8 protein-coding 23433 chr5 146027968 146027986 + 0 NA intron (NM_152550, intron 5 of 9) intron (NM_152550, intron 5 of 9) 76406 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 10779 chr15 97504225 97504329 + 0 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 17534 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LOC101927286 - uncharacterized LOC101927286 ncRNA 18859 chr22 37189315 37189419 + 0 NA Intergenic MER41B|LTR|ERV1 -1077 NM_031910 114904 Hs.22011 NM_031910 ENSG00000133466 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and tumor necrosis factor related protein 6 protein-coding 8804 chr14 31949811 31949915 + 0 NA Intergenic Intergenic 126836 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 11163 chr16 25107065 25107169 + 0 NA intron (NR_120306, intron 1 of 2) CpG 4438 NR_120306 102723510 Hs.569596 NR_120306 LCMT1-AS1 - LCMT1 antisense RNA 1 ncRNA 3861 chr10 71840273 71840377 + 0 NA intron (NM_001042465, intron 1 of 14) intron (NM_001042465, intron 1 of 14) 11050 NM_002778 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 21453 chr4 74659973 74660077 + 0 NA Intergenic Intergenic 134661 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 11659 chr16 75555318 75555453 + 0 NA intron (NR_074083, intron 2 of 6) intron (NR_074083, intron 2 of 6) 901 NM_001077416 79583 Hs.156784 NM_001077416 ENSG00000205084 TMEM231 ALYE870|JBTS20|MKS11|PRO1886 transmembrane protein 231 protein-coding 23018 chr5 111984240 111984317 + 0 NA intron (NR_046678, intron 3 of 3) intron (NR_046678, intron 3 of 3) -7347 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 18514 chr21 36656269 36656383 + 0 NA Intergenic Intergenic -42807 NM_005069 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 single-minded family bHLH transcription factor 2 protein-coding 17673 chr20 16574947 16575051 + 0 NA Intergenic CpG -1565 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 5649 chr11 73598193 73598331 + 0 NA promoter-TSS (NM_001286050) promoter-TSS (NM_001286050) -73 NM_001286050 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 25938 chr7 28037425 28037593 + 0 NA intron (NM_175061, intron 1 of 4) MIR3|SINE|MIR -142948 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 17987 chr20 38633762 38633866 + 0 NA intron (NM_001164431, intron 5 of 14) intron (NM_001164431, intron 5 of 14) 31880 NM_001164431 343578 Hs.451997 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 26316 chr7 55552745 55552897 + 0 NA promoter-TSS (NM_001284282) promoter-TSS (NM_001284282) -48 NM_001284282 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding 4383 chr10 113563667 113563705 + 0 NA intron (NM_004132, intron 1 of 12) intron (NM_004132, intron 1 of 12) 10708 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 15626 chr2 61536638 61536789 + 0 NA intron (NM_003400, intron 1 of 24) intron (NM_003400, intron 1 of 24) 1570 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM1|emb|exp1 exportin 1 protein-coding 2214 chr1 183471833 183471842 + 0 NA promoter-TSS (NM_173156) promoter-TSS (NM_173156) 145 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 16705 chr2 176562565 176562669 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR 38435 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 10307 chr15 66356652 66356769 + 0 NA promoter-TSS (NM_001289986) promoter-TSS (NM_001289986) 6 NM_017858 54962 Hs.744308 NM_017858 ENSG00000075131 TIPIN - TIMELESS interacting protein protein-coding 20368 chr3 149367227 149367404 + 0 NA Intergenic Intergenic -10463 NR_109810 100874091 Hs.549633 NR_046650 ENSG00000240541 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 19550 chr3 52670942 52671100 + 0 NA intron (NM_181042, intron 4 of 29) MLT1J|LTR|ERVL-MaLR 14759 NM_181042 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 19745 chr3 99014032 99014041 + 0 NA Intergenic L1ME2|LINE|L1 -112347 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 6566 chr12 8243126 8243259 + 0 NA promoter-TSS (NR_024254) promoter-TSS (NR_024254) -246 NR_024254 653113 Hs.661749 NR_024254 FAM86FP - family with sequence similarity 86, member A pseudogene pseudo 30683 chrX 48539466 48539570 + 0 NA promoter-TSS (NM_002536) promoter-TSS (NM_002536) -169 NM_002536 4943 Hs.694353 NM_002536 ENSG00000068354 TBC1D25 MG81|OATL1 TBC1 domain family member 25 protein-coding 29669 chr9 98248920 98249070 + 0 NA intron (NR_051978, intron 1 of 11) intron (NR_051978, intron 1 of 11) 6726 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 24971 chr6 106751770 106751895 + 0 NA intron (NR_033557, intron 1 of 6) intron (NR_033557, intron 1 of 6) -32293 NR_030314 693172 NR_030314 ENSG00000207577 MIR587 MIRN587|hsa-mir-587 microRNA 587 ncRNA 12615 chr17 47936211 47936336 + 0 NA intron (NR_103857, intron 1 of 2) intron (NR_103857, intron 1 of 2) 5131 NR_103857 100506325 Hs.656008 NR_103856 ENSG00000234494 SP2-AS1 - SP2 antisense RNA 1 ncRNA 6907 chr12 44589949 44590053 + 0 NA intron (NM_001145110, intron 16 of 20) intron (NM_001145110, intron 16 of 20) 285660 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 15290 chr2 30139701 30139768 + 0 NA Intergenic L1MB2|LINE|L1 -7150 NM_001127400 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 14751 chr19 52095811 52095915 + 0 NA promoter-TSS (NM_001136499) promoter-TSS (NM_001136499) -98 NM_001321349 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 8571 chr13 106847191 106847295 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR 193363 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 12703 chr17 51770110 51770179 + 0 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 388628 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 10443 chr15 74540924 74541090 + 0 NA promoter-TSS (NM_001307939) promoter-TSS (NM_001307939) -170 NM_001307939 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 16154 chr2 112692559 112692729 + 0 NA Intergenic Intergenic 46787 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 15018 chr2 11744149 11744298 + 0 NA intron (NM_001261427, intron 2 of 20) intron (NM_001261427, intron 2 of 20) -2373 NM_145693 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 6582 chr12 9638653 9638757 + 0 NA intron (NR_046448, intron 1 of 4) MER61-int|LTR|ERV1 -4163 NR_046449 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 1941 chr1 161726966 161727070 + 0 NA intron (NM_001320241, intron 6 of 6) CpG-1909 4365 NM_001288829 127943 Hs.517422 NM_001002901 ENSG00000162746 FCRLB FCRL2|FCRLM2|FCRLY|FREB-2|FREB2|FcRY Fc receptor like B protein-coding 29002 chr9 26892334 26892456 + 0 NA 5' UTR (NM_001167575, exon 1 of 6) 5' UTR (NM_001167575, exon 1 of 6) 433 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 11665 chr16 75764304 75764408 + 0 NA Intergenic Intergenic 116619 NR_144545 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 20758 chr3 181624559 181624663 + 0 NA intron (NR_075090, intron 2 of 2) intron (NR_075090, intron 2 of 2) 14277 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 27997 chr8 70328034 70328116 + 0 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 75180 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 14284 chr19 19034418 19034522 + 0 NA promoter-TSS (NM_001321699) promoter-TSS (NM_001321699) -418 NM_001321697 10147 Hs.77876 NM_014884 ENSG00000064607 SUGP2 SFRS14 SURP and G-patch domain containing 2 protein-coding 7243 chr12 68042350 68042478 + 0 NA Intergenic Intergenic 52969 NR_104124 100885789 Hs.439832 NR_104124 ENSG00000255733 IFNG-AS1 GS1-410F4.2|NEST|Tmevpg1 IFNG antisense RNA 1 ncRNA 8078 chr13 32315419 32315561 + 0 NA promoter-TSS (NM_000059) promoter-TSS (NM_000059) 10 NM_000059 675 Hs.34012 NM_000059 ENSG00000139618 BRCA2 BRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2|XRCC11 BRCA2, DNA repair associated protein-coding 14491 chr19 42220124 42220256 + 0 NA promoter-TSS (NM_133444) promoter-TSS (NM_133444) -38 NM_001270614 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 27505 chr8 22245157 22245309 + 0 NA promoter-TSS (NR_029714) promoter-TSS (NR_029714) 127 NM_001722 661 Hs.148342 NM_001722 ENSG00000168495 POLR3D BN51T|RPC4|RPC53|TSBN51 RNA polymerase III subunit D protein-coding 15604 chr2 58634116 58634198 + 0 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 113404 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 12344 chr17 33751202 33751306 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -217494 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 12738 chr17 56913996 56914012 + 0 NA promoter-TSS (NM_005082) promoter-TSS (NM_005082) 44 NM_005082 7706 Hs.528952 NM_005082 ENSG00000121060 TRIM25 EFP|RNF147|Z147|ZNF147 tripartite motif containing 25 protein-coding 30742 chrX 53434320 53434424 + 0 NA promoter-TSS (NM_004493) promoter-TSS (NM_004493) 4 NM_001037811 3028 Hs.171280 NM_004493 ENSG00000072506 HSD17B10 17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1 hydroxysteroid 17-beta dehydrogenase 10 protein-coding 5180 chr11 36510235 36510382 + 0 NA promoter-TSS (NM_004620) promoter-TSS (NM_004620) 5 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 30431 chrX 283312 283416 + 0 NA intron (NR_028057, intron 2 of 8).2 LTR9B|LTR|ERV1 1970 NM_018390 55344 Hs.522568 NM_018390 ENSG00000182378 PLCXD1 LL0XNC01-136G2.1 phosphatidylinositol specific phospholipase C X domain containing 1 protein-coding 10343 chr15 68017333 68017491 + 0 NA Intergenic LTR35|LTR|ERV1 -36767 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 17080 chr2 216109199 216109265 + 0 NA promoter-TSS (NM_021141) promoter-TSS (NM_021141) -65 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 13565 chr18 50158966 50159121 + 0 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) -32480 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 14220 chr19 16542516 16542525 + 0 NA promoter-TSS (NM_006387) promoter-TSS (NM_006387) -68 NM_006387 10523 Hs.740364 NM_006387 ENSG00000085872 CHERP DAN16|SCAF6|SRA1 calcium homeostasis endoplasmic reticulum protein protein-coding 7331 chr12 82314634 82314758 + 0 NA Intergenic L1PA6|LINE|L1 43724 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 23532 chr5 151075900 151075961 + 0 NA intron (NM_001252390, intron 1 of 17) (AC)n|Simple_repeat|Simple_repeat 5154 NM_001252385 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 20348 chr3 147656134 147656238 + 0 NA Intergenic Arthur1B|DNA|hAT-Tip100 234859 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 12858 chr17 64975540 64975564 + 0 NA promoter-TSS (NR_026903) promoter-TSS (NR_026903) 33 NR_026903 201283 Hs.396447 NM_153032 ENSG00000214174 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 29202 chr9 72024994 72025098 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 35559 NM_001128618 138240 Hs.371235 NM_001128618 ENSG00000204669 C9orf57 - chromosome 9 open reading frame 57 protein-coding 21466 chr4 76208534 76208638 + 0 NA intron (NM_005506, intron 1 of 11) intron (NM_005506, intron 1 of 11) 5313 NM_005506 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 10076 chr15 50355086 50355096 + 0 NA promoter-TSS (NR_026891) promoter-TSS (NR_026891) -212 NR_026891 55056 Hs.511316 NM_017976 ENSG00000104064 FLJ10038 - uncharacterized protein FLJ10038 ncRNA 28630 chr8 127223000 127223123 + 0 NA Intergenic Intergenic -3793 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 (non-protein coding) ncRNA 20743 chr3 179653443 179653595 + 0 NA intron (NM_003940, intron 1 of 20) CpG 374 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding 11858 chr16 89873932 89874036 + 0 NA intron (NM_014972, intron 1 of 17) CpG 398 NM_014972 22980 Hs.415342 NM_014972 ENSG00000141002 TCF25 FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049 transcription factor 25 protein-coding 6677 chr12 14961101 14961205 + 0 NA intron (NM_001321420, intron 1 of 6) intron (NM_001321420, intron 1 of 6) 113 NM_001321421 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 13687 chr18 61992467 61992571 + 0 NA Intergenic Intergenic -99448 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 21794 chr4 128517794 128517898 + 0 NA intron (NR_125882, intron 8 of 8) intron (NR_125882, intron 8 of 8) 89830 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 13675 chr18 60693543 60693647 + 0 NA Intergenic Intergenic -320827 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R - melanocortin 4 receptor protein-coding 4420 chr10 116682510 116682614 + 0 NA intron (NM_025015, intron 7 of 11) intron (NM_025015, intron 7 of 11) -12290 NM_001330142 143379 Hs.121347 NM_144661 ENSG00000165863 C10orf82 - chromosome 10 open reading frame 82 protein-coding 10311 chr15 66497658 66497838 + 0 NA promoter-TSS (NR_039737) promoter-TSS (NR_039737) 67 NM_001329615 10302 Hs.30174 NM_006049 ENSG00000174446 SNAPC5 SNAP19 small nuclear RNA activating complex polypeptide 5 protein-coding 20877 chr3 187137079 187137183 + 0 NA intron (NM_052969, intron 1 of 2) AluJo|SINE|Alu 2344 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L RPL39L1 ribosomal protein L39 like protein-coding 1978 chr1 164771722 164771876 + 0 NA intron (NR_038072, intron 1 of 3) intron (NR_038072, intron 1 of 3) 2842 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 1640 chr1 145958063 145958167 + 0 NA promoter-TSS (NM_153713) promoter-TSS (NM_153713) -96 NM_153713 128077 Hs.740619 NM_153713 ENSG00000271601 LIX1L - limb and CNS expressed 1 like protein-coding 26931 chr7 123557802 123557944 + 0 NA promoter-TSS (NM_001282422) promoter-TSS (NM_001282422) 31 NM_001282422 4698 Hs.651219 NM_005000 ENSG00000128609 NDUFA5 B13|CI-13KD-B|CI-13kB|NUFM|UQOR13 NADH:ubiquinone oxidoreductase subunit A5 protein-coding 10477 chr15 76150949 76151124 + 0 NA intron (NM_152335, intron 3 of 10) intron (NM_152335, intron 3 of 10) 30450 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 19117 chr3 8444511 8444615 + 0 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 57095 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 (head to head) ncRNA 30012 chr9 119969190 119969294 + 0 NA Intergenic Intergenic 34182 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 8262 chr13 49570169 49570330 + 0 NA intron (NM_018191, intron 2 of 12) intron (NM_018191, intron 2 of 12) 15334 NM_018191 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 17318 chr2 234964130 234964234 + 0 NA intron (NM_014521, intron 1 of 5) intron (NM_014521, intron 1 of 5) 12198 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 18108 chr20 45971917 45972021 + 0 NA intron (NM_022095, intron 1 of 27) CpG-17795 225 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 2026 chr1 167803373 167803540 + 0 NA Intergenic Intergenic 81506 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 9826 chr15 31841054 31841108 + 0 NA intron (NR_038253, intron 2 of 7) intron (NR_038253, intron 2 of 7) 29591 NM_001329907 161725 Hs.355236 NM_130901 ENSG00000169918 OTUD7A C15orf16|C16ORF15|CEZANNE2|OTUD7 OTU deubiquitinase 7A protein-coding 22235 chr5 13601302 13601406 + 0 NA Intergenic Intergenic 343126 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 20617 chr3 169754851 169754992 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 10139 NR_001566 7012 Hs.436182 NR_001566 ENSG00000270141 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 24404 chr6 32984839 32984968 + 0 NA Intergenic Intergenic 11819 NM_001199456 6046 Hs.75243 NM_005104 ENSG00000204256 BRD2 D6S113E|FSH|FSRG1|NAT|O27.1.1|RING3|RNF3 bromodomain containing 2 protein-coding 14421 chr19 38637179 38637198 + 0 NA TTS (NM_001308393) TTS (NM_001308393) -10428 NM_001322033 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 793 chr1 44986599 44986734 + 0 NA promoter-TSS (NM_001261418) promoter-TSS (NM_001261418) 56 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 8814 chr14 32418370 32418391 + 0 NA intron (NM_004274, intron 1 of 13) intron (NM_004274, intron 1 of 13) 89107 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 16183 chr2 113889849 113889933 + 0 NA promoter-TSS (NM_005721) promoter-TSS (NM_005721) -43 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 ARP3 actin related protein 3 homolog protein-coding 3674 chr10 50504156 50504260 + 0 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 119769 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 8047 chr13 30108901 30109048 + 0 NA promoter-TSS (NR_046998) promoter-TSS (NR_046998) -99 NR_046998 100874146 Hs.574116 NR_046998 ENSG00000224511 LINC00365 - long intergenic non-protein coding RNA 365 ncRNA 14232 chr19 17215311 17215440 + 0 NA promoter-TSS (NM_018467) promoter-TSS (NM_018467) 29 NM_018467 55850 Hs.16187 NM_018467 ENSG00000053501 USE1 D12|MDS032|P31|SLT1 unconventional SNARE in the ER 1 protein-coding 17739 chr20 20487943 20488047 + 0 NA intron (NM_020343, intron 36 of 39) MER8|DNA|TcMar-Tigger 119874 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 6982 chr12 50025418 50025464 + 0 NA 5' UTR (NM_001320003, exon 1 of 17) 5' UTR (NM_001320003, exon 1 of 17) 116 NM_001320003 29127 Hs.505469 NM_013277 ENSG00000161800 RACGAP1 CYK4|HsCYK-4|ID-GAP|MgcRacGAP Rac GTPase activating protein 1 protein-coding 30177 chr9 128271267 128271371 + 0 NA intron (NM_004486, intron 2 of 25) intron (NM_004486, intron 2 of 25) -4060 NM_001318092 375757 Hs.259594 NM_001040011 ENSG00000175854 SWI5 C9orf119|SAE3 SWI5 homologous recombination repair protein protein-coding 9360 chr14 73796101 73796130 + 0 NA intron (NR_109995, intron 2 of 2) intron (NR_109995, intron 2 of 2) 8755 NR_109995 100506476 Hs.287299 NR_109995 LOC100506476 - uncharacterized LOC100506476 ncRNA 16617 chr2 168545770 168545911 + 0 NA intron (NM_203463, intron 1 of 9) intron (NM_203463, intron 1 of 9) -37103 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 28687 chr8 130503257 130503361 + 0 NA Intergenic LTR8A|LTR|ERV1 -59649 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 22819 chr5 83096044 83096148 + 0 NA intron (NM_022550, intron 1 of 7) L1M3a|LINE|L1 -18643 NM_174909 153339 Hs.355606 NM_174909 ENSG00000174695 TMEM167A TMEM167 transmembrane protein 167A protein-coding 6103 chr11 113384651 113384781 + 0 NA Intergenic Intergenic -3075 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2 ankyrin repeat and kinase domain containing 1 protein-coding 5939 chr11 99694026 99694090 + 0 NA intron (NM_175566, intron 1 of 21) L2c|LINE|L2 137913 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 28759 chr8 140309790 140309894 + 0 NA intron (NM_031466, intron 10 of 22) intron (NM_031466, intron 10 of 22) 147920 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 1226 chr1 86429962 86430077 + 0 NA intron (NM_006536, intron 3 of 13) intron (NM_006536, intron 3 of 13) 6136 NM_006536 9635 Hs.241551 NM_006536 ENSG00000137975 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 1949 chr1 162350061 162350090 + 0 NA intron (NM_014697, intron 6 of 9) intron (NM_014697, intron 6 of 9) 7529 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 1256 chr1 88061143 88061309 + 0 NA Intergenic Intergenic -622918 NM_001320709 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 28056 chr8 78116672 78116776 + 0 NA Intergenic Intergenic -399377 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 8203 chr13 44714222 44714297 + 0 NA Intergenic Intergenic 95371 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 25422 chr6 158853675 158853776 + 0 NA intron (NR_028496, intron 2 of 2) intron (NR_028496, intron 2 of 2) 3907 NR_028496 202459 Hs.487035 NM_145303 ENSG00000243775 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 18757 chr22 29311190 29311294 + 0 NA intron (NM_001278730, intron 5 of 5) intron (NM_001278730, intron 5 of 5) 4247 NM_001278730 10634 Hs.322852 NM_006478 ENSG00000185340 GAS2L1 GAR22 growth arrest specific 2 like 1 protein-coding 5927 chr11 96314419 96314568 + 0 NA intron (NM_032427, intron 1 of 4) X2_LINE|LINE|CR1 -26945 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 1853 chr1 156500831 156500864 + 0 NA promoter-TSS (NM_005920) promoter-TSS (NM_005920) -5 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 29132 chr9 69105248 69105381 + 0 NA Intergenic Intergenic -15950 NM_001170414 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 12221 chr17 21287976 21288051 + 0 NA promoter-TSS (NM_002756) promoter-TSS (NM_002756) -23 NM_002756 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 28715 chr8 133017340 133017444 + 0 NA intron (NM_003235, intron 37 of 47) MER46C|DNA|TcMar-Tigger 29189 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 18612 chr22 17638627 17638707 + 0 NA promoter-TSS (NM_001270730) promoter-TSS (NM_001270730) 83 NM_001270731 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 2300 chr1 197201437 197201586 + 0 NA promoter-TSS (NR_135153) promoter-TSS (NR_135153) 49 NM_001257965 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs 1, cell polarity complex component protein-coding 2480 chr1 205449965 205450082 + 0 NA intron (NR_103783, intron 1 of 1) intron (NR_103783, intron 1 of 1) -1625 NR_029893 442891 NR_029893 ENSG00000199059 MIR135B MIRN135B|mir-135b microRNA 135b ncRNA 27694 chr8 37916012 37916150 + 0 NA Intergenic Intergenic -16584 NM_001002814 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 26011 chr7 33129503 33129607 + 0 NA promoter-TSS (NM_014451) promoter-TSS (NM_014451) 15 NM_014451 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 799 chr1 45339940 45340172 + 0 NA promoter-TSS (NM_001048174) promoter-TSS (NM_001048174) 59 NM_001048173 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 925 chr1 56387091 56387195 + 0 NA Intergenic Intergenic 192441 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 15888 chr2 84927077 84927181 + 0 NA Intergenic Intergenic 21490 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 24477 chr6 36914297 36914408 + 0 NA exon (NM_001286636, exon 6 of 10) exon (NM_001286636, exon 6 of 10) 28488 NM_001286635 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP chromosome 6 open reading frame 89 protein-coding 11873 chr17 752235 752333 + 0 NA promoter-TSS (NR_024120) promoter-TSS (NR_024120) -23 NM_015721 50628 Hs.499620 NM_015721 ENSG00000179409 GEMIN4 HC56|HCAP1|HHRF-1|p97 gem nuclear organelle associated protein 4 protein-coding 7834 chr12 123584370 123584507 + 0 NA promoter-TSS (NR_110049) promoter-TSS (NR_110049) -91 NM_006815 10959 Hs.733403 NM_006815 ENSG00000086598 TMED2 P24A|RNP24|p24|p24b1|p24beta1 transmembrane p24 trafficking protein 2 protein-coding 8155 chr13 40666634 40666697 + 0 NA promoter-TSS (NM_002015) promoter-TSS (NM_002015) -68 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 24093 chr6 15066731 15066835 + 0 NA Intergenic Intergenic -179192 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 3357 chr10 17353711 17353755 + 0 NA intron (NR_144322, intron 4 of 6) intron (NR_144322, intron 4 of 6) -33203 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 15511 chr2 47571445 47571496 + 0 NA Intergenic CpG-16002 -1139 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 17197 chr2 226031399 226031503 + 0 NA Intergenic Intergenic -111343 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 1955 chr1 162691080 162691184 + 0 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 58694 NM_001014796 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10 discoidin domain receptor tyrosine kinase 2 protein-coding 27159 chr7 143263326 143263508 + 0 NA promoter-TSS (NM_015917) promoter-TSS (NM_015917) -12 NM_001143679 373156 Hs.390667 NM_015917 ENSG00000197448 GSTK1 GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1 glutathione S-transferase kappa 1 protein-coding 28017 chr8 73008716 73008820 + 0 NA promoter-TSS (NM_003218) promoter-TSS (NM_003218) -94 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 11544 chr16 68790201 68790319 + 0 NA intron (NM_004360, intron 2 of 15) intron (NM_004360, intron 2 of 15) 47744 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 5866 chr11 93986844 93986948 + 0 NA Intergenic Intergenic -34316 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin like 1 protein-coding 29813 chr9 108814036 108814195 + 0 NA Intergenic Intergenic 41880 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 8448 chr13 94641779 94641883 + 0 NA Intergenic Intergenic 39981 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 15363 chr2 37562408 37562512 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 109739 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 2784 chr1 223244890 223244994 + 0 NA intron (NM_001037175, intron 5 of 5) intron (NM_001037175, intron 5 of 5) -101660 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 18337 chr20 58888876 58888892 + 0 NA promoter-TSS (NR_126334) promoter-TSS (NR_126334) -74 NR_126334 101927932 Hs.736856 NR_126334 LOC101927932 - uncharacterized LOC101927932 ncRNA 14285 chr19 19063550 19063650 + 0 NA promoter-TSS (NM_178526) promoter-TSS (NM_178526) -361 NM_001321544 284439 Hs.303669 NM_178526 ENSG00000181035 SLC25A42 - solute carrier family 25 member 42 protein-coding 3791 chr10 66926005 66926109 + 0 NA promoter-TSS (NM_178011) promoter-TSS (NM_178011) 23 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 27667 chr8 33567097 33567286 + 0 NA promoter-TSS (NM_024787) promoter-TSS (NM_024787) -63 NM_024787 79845 Hs.151237 NM_024787 ENSG00000133874 RNF122 - ring finger protein 122 protein-coding 15000 chr2 10654154 10654258 + 0 NA intron (NR_048552, intron 11 of 19) intron (NR_048552, intron 11 of 19) 35781 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 14691 chr19 49487284 49487435 + 0 NA promoter-TSS (NR_073024) promoter-TSS (NR_073024) -195 NR_073024 23521 Hs.523185 NM_012423 ENSG00000142541 RPL13A L13A|TSTA1 ribosomal protein L13a protein-coding 12556 chr17 44141766 44141829 + 0 NA promoter-TSS (NM_001321310) promoter-TSS (NM_001321310) -105 NM_024032 78995 Hs.437059 NM_024032 ENSG00000125319 C17orf53 - chromosome 17 open reading frame 53 protein-coding 331 chr1 21963992 21964096 + 0 NA Intergenic Intergenic -12850 NM_007352 23436 Hs.728752 NM_007352 ENSG00000219073 CELA3B CBPP|ELA3B chymotrypsin like elastase family member 3B protein-coding 29059 chr9 34637764 34637909 + 0 NA promoter-TSS (NM_001282205) promoter-TSS (NM_001282205) -10 NM_001282206 10280 Hs.522087 NM_005866 ENSG00000147955 SIGMAR1 ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R sigma non-opioid intracellular receptor 1 protein-coding 26206 chr7 46485731 46485835 + 0 NA Intergenic Intergenic 211339 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 12202 chr17 19958122 19958218 + 0 NA exon (NM_007202, exon 4 of 15) exon (NM_007202, exon 4 of 15) 19686 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 2746 chr1 220810268 220810428 + 0 NA intron (NM_022746, intron 6 of 6) intron (NM_022746, intron 6 of 6) -18907 NR_110797 101929730 Hs.398159 NR_110797 ENSG00000238078 LINC01352 - long intergenic non-protein coding RNA 1352 ncRNA 3606 chr10 42851089 42851205 + 0 NA Intergenic L1MD2|LINE|L1 -20374 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LOC101929445 - uncharacterized LOC101929445 ncRNA 19959 chr3 118263199 118263255 + 0 NA Intergenic Intergenic -378541 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 26153 chr7 43637519 43637666 + 0 NA intron (NR_047701, intron 7 of 7) intron (NR_047701, intron 7 of 7) 54499 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 20587 chr3 167741116 167741220 + 0 NA intron (NM_005025, intron 1 of 8) intron (NM_005025, intron 1 of 8) 5445 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 16823 chr2 190534591 190534716 + 0 NA promoter-TSS (NM_001142645) promoter-TSS (NM_001142645) 89 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 15424 chr2 42494950 42495070 + 0 NA promoter-TSS (NM_133329) promoter-TSS (NM_133329) 441 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 30031 chr9 121154824 121154928 + 0 NA exon (NM_007018, exon 25 of 42) exon (NM_007018, exon 25 of 42) 33106 NM_001330762 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 13749 chr18 69839172 69839276 + 0 NA intron (NM_152721, intron 7 of 7) (CCTCC)n|Simple_repeat|Simple_repeat 108629 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 6843 chr12 32679638 32679663 + 0 NA intron (NM_001330380, intron 1 of 18) CpG 450 NM_001278466 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV dynamin 1 like protein-coding 27236 chr7 151552596 151552661 + 0 NA Intergenic Intergenic -32704 NM_005614 6009 Hs.283521 NM_005614 ENSG00000106615 RHEB RHEB2 Ras homolog enriched in brain protein-coding 14693 chr19 49580501 49580648 + 0 NA promoter-TSS (NM_001270960) promoter-TSS (NM_001270960) -2 NM_015953 51070 Hs.7236 NM_015953 ENSG00000142546 NOSIP CGI-25 nitric oxide synthase interacting protein protein-coding 4112 chr10 95264462 95264586 + 0 NA intron (NM_020992, intron 3 of 6) intron (NM_020992, intron 3 of 6) 26624 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 9910 chr15 39782453 39782649 + 0 NA promoter-TSS (NR_135665) promoter-TSS (NR_135665) 287 NM_152597 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 27028 chr7 132030963 132031067 + 0 NA Intergenic Intergenic 120795 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 8665 chr14 20461656 20461811 + 0 NA promoter-TSS (NM_001100814) promoter-TSS (NM_001100814) -121 NM_001100814 90809 Hs.7001 NM_144568 ENSG00000165782 TMEM55B C14orf9 transmembrane protein 55B protein-coding 1312 chr1 92831932 92832068 + 0 NA promoter-TSS (NM_000969) promoter-TSS (NM_000969) -37 NM_000969 6125 Hs.532359 NM_000969 ENSG00000122406 RPL5 DBA6|L5|MSTP030|PPP1R135 ribosomal protein L5 protein-coding 7873 chr12 127053034 127053071 + 0 NA intron (NR_104646, intron 1 of 6) intron (NR_104646, intron 1 of 6) 7345 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 5293 chr11 58578823 58578937 + 0 NA promoter-TSS (NM_001143995) promoter-TSS (NM_001143995) -234 NR_024091 386607 Hs.524920 NM_170768 ZFP91-CNTF - ZFP91-CNTF readthrough (NMD candidate) ncRNA 29533 chr9 91500537 91500641 + 0 NA Intergenic MER49|LTR|ERV1 -75963 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 30399 chr9 138150303 138150400 + 0 NA intron (NR_027156, intron 1 of 4) CpG 238 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 25390 chr6 156719971 156720077 + 0 NA Intergenic CpG -57831 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 7253 chr12 71557049 71557153 + 0 NA intron (NR_110596, intron 6 of 19) intron (NR_110596, intron 6 of 19) -106796 NM_031435 83591 Hs.245798 NM_031435 ENSG00000173451 THAP2 - THAP domain containing 2 protein-coding 21728 chr4 115834612 115834716 + 0 NA Intergenic L1PA7|LINE|L1 -465061 NR_031737 100302290 NR_031737 ENSG00000270394 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 13005 chr17 75436082 75436187 + 0 NA Intergenic Intergenic -20330 NM_001321149 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 KIAA0195 transmembrane protein 94 protein-coding 22273 chr5 16617019 16617123 + 0 NA promoter-TSS (NM_001034850) promoter-TSS (NM_001034850) -13 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 FAM134B JK-1|JK1 family with sequence similarity 134 member B protein-coding 30680 chrX 48476093 48476223 + 0 NA 5' UTR (NM_001282157, exon 1 of 9) 5' UTR (NM_001282157, exon 1 of 9) 137 NM_177439 24140 Hs.23170 NM_012280 ENSG00000068438 FTSJ1 CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7 FtsJ RNA methyltransferase homolog 1 (E. coli) protein-coding 26354 chr7 66654290 66654394 + 0 NA promoter-TSS (NR_110037) promoter-TSS (NR_110037) -177 NR_110037 100996437 Hs.667408 NR_110037 LOC100996437 - uncharacterized LOC100996437 ncRNA 19798 chr3 105119888 105119988 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -246775 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 10486 chr15 77067497 77067640 + 0 NA intron (NM_198902, intron 1 of 5) intron (NM_198902, intron 1 of 5) 3660 NM_001168412 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 14256 chr19 18152975 18153079 + 0 NA promoter-TSS (NR_073517) promoter-TSS (NR_073517) -151 NR_073517 5296 Hs.371344 NM_005027 ENSG00000105647 PIK3R2 MPPH|MPPH1|P85B|p85|p85-BETA phosphoinositide-3-kinase regulatory subunit 2 protein-coding 9590 chr14 94026242 94026391 + 0 NA promoter-TSS (NM_023112) promoter-TSS (NM_023112) -62 NM_023112 78990 Hs.278815 NM_023112 ENSG00000089723 OTUB2 C14orf137|OTB2|OTU2 OTU deubiquitinase, ubiquitin aldehyde binding 2 protein-coding 13631 chr18 57715811 57715957 + 0 NA intron (NM_005603, intron 2 of 27) L1M1|LINE|L1 85582 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 10210 chr15 59689353 59689457 + 0 NA promoter-TSS (NM_001320675) promoter-TSS (NM_001320675) 129 NM_001320674 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 30720 chrX 49269639 49269772 + 0 NA promoter-TSS (NM_001184745) promoter-TSS (NM_001184745) -138 NM_033215 89801 Hs.433652 NM_033215 ENSG00000049769 PPP1R3F HB2E|LL0XNC01-7P3.1|R3F protein phosphatase 1 regulatory subunit 3F protein-coding 7462 chr12 95942924 95943078 + 0 NA promoter-TSS (NM_182496) promoter-TSS (NM_182496) -292 NM_152435 144193 Hs.424907 NM_152435 ENSG00000139344 AMDHD1 HMFT1272 amidohydrolase domain containing 1 protein-coding 6149 chr11 118088555 118088693 + 0 NA intron (NR_110734, intron 1 of 11) intron (NR_110734, intron 1 of 11) -1831 NR_038318 100526771 Hs.627426 NR_038318 ENSG00000255274 TMPRSS4-AS1 - TMPRSS4 antisense RNA 1 ncRNA 21785 chr4 127783245 127783371 + 0 NA promoter-TSS (NM_001317382) promoter-TSS (NM_001317382) -215 NM_001317382 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 16059 chr2 104658664 104658768 + 0 NA Intergenic Intergenic 99003 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 17425 chr20 407798 407902 + 0 NA promoter-TSS (NM_001323960) promoter-TSS (NM_001323960) -200 NM_001323958 10616 Hs.29546 NM_006462 ENSG00000125826 RBCK1 C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 RANBP2-type and C3HC4-type zinc finger containing 1 protein-coding 3984 chr10 80205635 80205709 + 0 NA promoter-TSS (NM_001278407) promoter-TSS (NM_001278407) 5 NM_001278407 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ANX11|CAP50 annexin A11 protein-coding 27172 chr7 144127862 144128029 + 0 NA Intergenic Intergenic -1168 NM_001001659 135941 Hs.534547 NM_001001659 ENSG00000221938 OR2A14 OR2A14P|OR2A6|OST182 olfactory receptor family 2 subfamily A member 14 protein-coding 5667 chr11 74505118 74505222 + 0 NA Intergenic Intergenic -11457 NM_001329942 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 (putative) protein-coding 9082 chr14 56996843 56996947 + 0 NA Intergenic Intergenic 183712 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 10976 chr16 8621576 8621778 + 0 NA promoter-TSS (NM_024109) promoter-TSS (NM_024109) 37 NM_024109 79091 Hs.306380 NM_024109 ENSG00000067365 METTL22 C16orf68 methyltransferase like 22 protein-coding 25511 chr7 89425 89544 + 0 NA Intergenic Intergenic 59954 NR_134325 102723672 Hs.605204 NR_134325 LOC102723672 - uncharacterized LOC102723672 ncRNA 12506 chr17 41865382 41865486 + 0 NA promoter-TSS (NM_018143) promoter-TSS (NM_018143) -3 NM_018143 55175 Hs.13268 NM_018143 ENSG00000178502 KLHL11 - kelch like family member 11 protein-coding 8924 chr14 39393396 39393498 + 0 NA Intergenic Intergenic 39053 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 18206 chr20 50993317 50993353 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 29803 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 25664 chr7 7765550 7765654 + 0 NA intron (NM_001302350, intron 3 of 4) L2c|LINE|L2 -46995 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 9891 chr15 38252695 38252799 + 0 NA promoter-TSS (NM_152594) promoter-TSS (NM_152594) -104 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 1472 chr1 109240897 109240950 + 0 NA Intergenic Intergenic -9096 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 3684 chr10 52314391 52314490 + 0 NA promoter-TSS (NR_038277) promoter-TSS (NR_038277) 159 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 22944 chr5 98773451 98773579 + 0 NA promoter-TSS (NR_033932) promoter-TSS (NR_033932) -431 NR_033932 503569 Hs.586188 NR_033932 ENSG00000246763 RGMB-AS1 - RGMB antisense RNA 1 ncRNA 13234 chr18 3983517 3983570 + 0 NA intron (NR_102696, intron 1 of 4) intron (NR_102696, intron 1 of 4) 21190 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 24827 chr6 79778126 79778228 + 0 NA Intergenic Intergenic 34069 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 13431 chr18 35041211 35041315 + 0 NA promoter-TSS (NM_001256420) promoter-TSS (NM_001256420) -97 NM_014268 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 2799 chr1 223776110 223776214 + 0 NA TTS (NM_001748) TTS (NM_001748) 63745 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 31054 chrX 130120985 130121225 + 0 NA Intergenic CpG -10392 NM_001127197 2000 Hs.271940 NM_001421 ENSG00000102034 ELF4 ELFR|MEF E74 like ETS transcription factor 4 protein-coding 30136 chr9 127245198 127245337 + 0 NA Intergenic CpG -18395 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 29014 chr9 27573734 27573876 + 0 NA promoter-TSS (NM_018325) promoter-TSS (NM_018325) 61 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENNL72|FTDALS|FTDALS1 chromosome 9 open reading frame 72 protein-coding 20559 chr3 161163362 161163525 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -57847 NM_015938 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 15070 chr2 15177122 15177226 + 0 NA intron (NM_015909, intron 51 of 51) intron (NM_015909, intron 51 of 51) 384174 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 30305 chr9 133022465 133022605 + 0 NA Intergenic Intergenic 2105 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 26928 chr7 123242837 123242976 + 0 NA Intergenic MLT2B3|LTR|ERVL -42935 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 5601 chr11 69949543 69949685 + 0 NA Intergenic Intergenic 114310 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LOC101928443 - uncharacterized LOC101928443 ncRNA 21873 chr4 145937364 145937468 + 0 NA intron (NM_001306215, intron 1 of 14) CpG 1544 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 19010 chr22 45639332 45639386 + 0 NA Intergenic Intergenic -32439 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 14137 chr19 12401224 12401377 + 0 NA promoter-TSS (NM_001080821) promoter-TSS (NM_001080821) -26 NM_001322498 90576 Hs.546637 NM_203381 ENSG00000196466 ZNF799 HIT-40|ZNF842 zinc finger protein 799 protein-coding 348 chr1 23484271 23484424 + 0 NA promoter-TSS (NM_001143778) promoter-TSS (NM_001143778) -90 NM_001143778 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 30589 chrX 28398496 28398600 + 0 NA Intergenic MER92D|LTR|ERV1 97115 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 29258 chr9 75028443 75028535 + 0 NA promoter-TSS (NM_152420) promoter-TSS (NM_152420) -59 NR_135282 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 11389 chr16 55692871 55692975 + 0 NA intron (NM_001172502, intron 3 of 11) MamRep564|Unknown|Unknown 21252 NM_001172502 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 28502 chr8 118951684 118951773 + 0 NA promoter-TSS (NM_001324095) promoter-TSS (NM_001324095) 416 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 30786 chrX 67619385 67619489 + 0 NA intron (NM_001011645, intron 1 of 7) intron (NM_001011645, intron 1 of 7) 50596 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 25309 chr6 149317441 149317579 + 0 NA promoter-TSS (NM_001292034) promoter-TSS (NM_001292034) -417 NM_001292034 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 6190 chr11 119121326 119121470 + 0 NA promoter-TSS (NM_015517) promoter-TSS (NM_015517) -125 NM_001243259 25988 Hs.504091 NM_015517 ENSG00000172273 HINFP HiNF-P|MIZF|ZNF743 histone H4 transcription factor protein-coding 23123 chr5 124656069 124656169 + 0 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 88993 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 16301 chr2 128585919 128585956 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -267340 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 14202 chr19 15419045 15419160 + 0 NA promoter-TSS (NM_001291478) promoter-TSS (NM_001291478) 19 NR_111971 26993 Hs.399800 NM_014371 ENSG00000011243 AKAP8L HA95|HAP95|NAKAP|NAKAP95 A-kinase anchoring protein 8 like protein-coding 12849 chr17 64506564 64506613 + 0 NA promoter-TSS (NM_001320597) promoter-TSS (NM_001320597) -67 NM_004396 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 7353 chr12 85457090 85457194 + 0 NA Intergenic LTR1A1|LTR|ERV1 176884 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 1090 chr1 68231763 68231845 + 0 NA intron (NM_024911, intron 1 of 11) CpG 742 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 wntless Wnt ligand secretion mediator protein-coding 993 chr1 61993348 61993452 + 0 NA intron (NM_176877, intron 28 of 42) MER21C|LTR|ERVL -85386 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 30678 chrX 47836689 47836799 + 0 NA promoter-TSS (NM_007137) promoter-TSS (NM_007137) -158 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 12517 chr17 42409690 42409719 + 0 NA intron (NM_012232, intron 1 of 1) intron (NM_012232, intron 1 of 1) 13616 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 PTRF CAVIN|CAVIN1|CGL4|FKSG13|cavin-1 polymerase I and transcript release factor protein-coding 13350 chr18 26480993 26481029 + 0 NA intron (NM_001258222, intron 2 of 4) intron (NM_001258222, intron 2 of 4) 58016 NR_110762 100506787 Hs.734746 NR_110762 LINC01543 - long intergenic non-protein coding RNA 1543 ncRNA 28422 chr8 109539513 109539648 + 0 NA promoter-TSS (NM_004215) promoter-TSS (NM_004215) -120 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated, antigen, 9 protein-coding 28592 chr8 125260135 125260284 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) 168368 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase protein-coding 20791 chr3 183124066 183124170 + 0 NA exon (NM_014398, exon 6 of 6) exon (NM_014398, exon 6 of 6) -24531 NM_001293273 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 21724 chr4 114598551 114598552 + 0 NA promoter-TSS (NM_001322114) promoter-TSS (NM_001322114) 149 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 14093 chr19 10891756 10891910 + 0 NA intron (NM_199141, intron 1 of 15) intron (NM_199141, intron 1 of 15) 20256 NM_199141 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 6844 chr12 32719072 32719235 + 0 NA intron (NM_001330380, intron 8 of 18) AluJr|SINE|Alu 36800 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 14081 chr19 10566030 10566181 + 0 NA promoter-TSS (NM_023008) promoter-TSS (NM_023008) -79 NM_023008 65095 Hs.709967 NM_023008 ENSG00000129347 KRI1 - KRI1 homolog protein-coding 29599 chr9 95004862 95004926 + 0 NA intron (NM_001193329, intron 10 of 15) CpG -60456 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 23188 chr5 131165218 131165333 + 0 NA promoter-TSS (NR_073488) promoter-TSS (NR_073488) 73 NR_073488 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 19350 chr3 37243146 37243285 + 0 NA promoter-TSS (NM_001172713) promoter-TSS (NM_001172713) 24 NM_001172713 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 4458 chr10 118840225 118840324 + 0 NA Intergenic MER54B|LTR|ERVL -85028 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 21262 chr4 25377189 25377270 + 0 NA promoter-TSS (NM_001286756) promoter-TSS (NM_001286756) 3 NM_001286756 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 1425 chr1 101653693 101653797 + 0 NA Intergenic L1MA4|LINE|L1 193335 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 26647 chr7 97006133 97006237 + 0 NA exon (NM_005222, exon 1 of 3) exon (NM_005222, exon 1 of 3) 207 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 19469 chr3 48465696 48465846 + 0 NA TTS (NM_001271022) TTS (NM_001271022) 251 NM_007248 11277 Hs.707026 NM_007248 ENSG00000213689 TREX1 AGS1|CRV|DRN3|HERNS three prime repair exonuclease 1 protein-coding 17753 chr20 22379574 22379749 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 40982 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 18156 chr20 49219284 49219406 + 0 NA promoter-TSS (NM_001319135) promoter-TSS (NM_001319135) -50 NM_001319135 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 10848 chr16 953855 954009 + 0 NA intron (NR_033645, intron 2 of 11) intron (NR_033645, intron 2 of 11) 17052 NR_033646 64788 Hs.71912 NM_022773 ENSG00000103227 LMF1 C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A lipase maturation factor 1 protein-coding 25655 chr7 7416412 7416446 + 0 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 119400 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 15035 chr2 12318648 12318752 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 119570 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 9067 chr14 55699257 55699361 + 0 NA Intergenic LTR78|LTR|ERV1 -66936 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 24434 chr6 34696857 34696946 + 0 NA promoter-TSS (NR_134626) promoter-TSS (NR_134626) -44 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 11236 chr16 30658668 30658778 + 0 NA promoter-TSS (NM_001105079) promoter-TSS (NM_001105079) -796 NM_001105079 64319 Hs.247186 NM_022452 ENSG00000156860 FBRS FBS|FBS1 fibrosin protein-coding 14267 chr19 18374464 18374636 + 0 NA Intergenic Intergenic -11410 NM_004864 9518 Hs.616962 NM_004864 ENSG00000130513 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 8741 chr14 23647341 23647445 + 0 NA Intergenic Intergenic 11029 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 2143 chr1 179293705 179293805 + 0 NA promoter-TSS (NM_001252512) promoter-TSS (NM_001252512) 41 NR_045530 6646 Hs.445588 NM_003101 ENSG00000057252 SOAT1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT sterol O-acyltransferase 1 protein-coding 23820 chr5 179624435 179624495 + 0 NA promoter-TSS (NM_001257293) promoter-TSS (NM_001257293) -744 NM_005520 3187 Hs.604001 NM_005520 ENSG00000169045 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 (H) protein-coding 20920 chr3 189790825 189790963 + 0 NA intron (NM_001329150, intron 1 of 8) intron (NM_001329150, intron 1 of 8) 1234 NM_001114981 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 17525 chr20 5268573 5268676 + 0 NA Intergenic Intergenic 48108 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 9658 chr14 99580001 99580155 + 0 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 24312 NM_001144995 317762 Hs.709288 NM_001144995 ENSG00000205476 CCDC85C - coiled-coil domain containing 85C protein-coding 9060 chr14 55427546 55427698 + 0 NA intron (NM_199047, intron 5 of 6) intron (NM_199047, intron 5 of 6) 12923 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 13701 chr18 63161820 63161903 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 157519 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 23304 chr5 138352537 138352679 + 0 NA promoter-TSS (NM_016604) promoter-TSS (NM_016604) 12 NM_016604 51780 Hs.483486 NM_016604 ENSG00000120733 KDM3B 5qNCA|C5orf7|JMJD1B|NET22 lysine demethylase 3B protein-coding 14454 chr19 40434126 40434230 + 0 NA Intergenic CpG -8153 NM_013376 29950 Hs.269898 NM_013376 ENSG00000197019 SERTAD1 SEI1|TRIP-Br1 SERTA domain containing 1 protein-coding 9451 chr14 79045382 79045459 + 0 NA intron (NM_001330195, intron 15 of 20) intron (NM_001330195, intron 15 of 20) -154562 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 10420 chr15 72474261 72474365 + 0 NA promoter-TSS (NR_135678) promoter-TSS (NR_135678) -13 NM_005744 25820 Hs.268787 NM_005744 ENSG00000166233 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 5318 chr11 59707007 59707142 + 0 NA Intergenic LTR3|LTR|ERVK 6771 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor family 10 subfamily V member 1 protein-coding 20963 chr3 191337964 191338068 + 0 NA intron (NM_178335, intron 1 of 11) intron (NM_178335, intron 1 of 11) -7480 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 12788 chr17 59786689 59786804 + 0 NA intron (NM_030938, intron 7 of 11) intron (NM_030938, intron 7 of 11) -54520 NR_029493 406991 Hs.444569 NR_029493 ENSG00000062716 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 11952 chr17 4329957 4330108 + 0 NA intron (NM_003342, intron 1 of 5) intron (NM_003342, intron 1 of 5) 36642 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 16459 chr2 150521373 150521503 + 0 NA Intergenic Intergenic -33743 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 15690 chr2 65729397 65729514 + 0 NA Intergenic Intergenic -296933 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 4223 chr10 100890755 100890885 + 0 NA Intergenic Intergenic -21749 NM_001136123 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 28598 chr8 125544682 125544786 + 0 NA Intergenic Intergenic 112525 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 22597 chr5 60196513 60196617 + 0 NA intron (NM_001165899, intron 1 of 16) intron (NM_001165899, intron 1 of 16) -291148 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 (non-protein coding) ncRNA 5031 chr11 26332069 26332255 + 0 NA promoter-TSS (NM_031418) promoter-TSS (NM_031418) 31 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 26154 chr7 43648055 43648150 + 0 NA intron (NM_018224, intron 2 of 5) intron (NM_018224, intron 2 of 5) 65009 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 10095 chr15 51777085 51777238 + 0 NA intron (NM_014548, intron 5 of 9) intron (NM_014548, intron 5 of 9) 25600 NM_001142885 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 11206 chr16 30021524 30021562 + 0 NA Intergenic CpG -1791 NM_001109659 146378 Hs.651588 NM_001109659 ENSG00000167194 C16orf92 - chromosome 16 open reading frame 92 protein-coding 20460 chr3 155270883 155270987 + 0 NA Intergenic L1PBa|LINE|L1 22765 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 17456 chr20 2102063 2102141 + 0 NA exon (NM_080836, exon 1 of 4) exon (NM_080836, exon 1 of 4) 220 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 10409 chr15 72184267 72184371 + 0 NA intron (NM_001012642, intron 1 of 11) intron (NM_001012642, intron 1 of 11) 13476 NM_001012642 196996 Hs.596332 NM_001012642 ENSG00000175318 GRAMD2 - GRAM domain containing 2 protein-coding 24550 chr6 42118599 42118717 + 0 NA intron (NM_001164446, intron 2 of 4) intron (NM_001164446, intron 2 of 4) 24319 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 2899 chr1 228635341 228635487 + 0 NA Intergenic CpG -4906 NR_023378 100169767 NR_023378 ENSG00000202257 RNA5S16 RN5S16 RNA, 5S ribosomal 16 rRNA 3045 chr1 237873564 237873699 + 0 NA intron (NR_027247, intron 3 of 11) intron (NR_027247, intron 3 of 11) 11456 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 25997 chr7 32728723 32728904 + 0 NA non-coding (NR_003502, exon 1 of 1) non-coding (NR_003502, exon 1 of 1) 863 NR_003502 441208 Hs.510645 NM_001013723 ZNRF2P1 - zinc and ring finger 2 pseudogene 1 pseudo 20706 chr3 177360027 177360170 + 0 NA Intergenic Intergenic 65656 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 9136 chr14 60806144 60806248 + 0 NA intron (NM_001177963, intron 3 of 6) L2b|LINE|L2 71455 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1, CDK activating kinase assembly factor protein-coding 22012 chr4 172514160 172514281 + 0 NA intron (NM_001034845, intron 5 of 12) L1PB1|LINE|L1 174697 NR_125895 101928314 Hs.566023 NR_125894 LOC101928314 - uncharacterized LOC101928314 ncRNA 16871 chr2 196639532 196639727 + 0 NA promoter-TSS (NM_001080539) promoter-TSS (NM_001080539) -3 NM_001080539 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 7282 chr12 76020430 76020534 + 0 NA Intergenic Intergenic 11294 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 3404 chr10 22316323 22316448 + 0 NA promoter-TSS (NM_001204062) promoter-TSS (NM_001204062) 2 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 - COMMD3-BMI1 readthrough protein-coding 28990 chr9 22103407 22103511 + 0 NA intron (NR_003529, intron 14 of 18) intron (NR_003529, intron 14 of 18) -94146 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 5132 chr11 34274874 34275010 + 0 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 83066 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 22624 chr5 62412596 62412710 + 0 NA promoter-TSS (NM_016338) promoter-TSS (NM_016338) -93 NM_016338 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 16018 chr2 100292201 100292305 + 0 NA intron (NM_198461, intron 9 of 11) intron (NM_198461, intron 9 of 11) 30480 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 9448 chr14 78255247 78255351 + 0 NA intron (NR_073547, intron 2 of 20) intron (NR_073547, intron 2 of 20) 84926 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 23558 chr5 152349841 152349945 + 0 NA Intergenic Intergenic 55386 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 16256 chr2 123080546 123080650 + 0 NA Intergenic L1PA16|LINE|L1 -944689 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 6260 chr11 124115402 124115506 + 0 NA promoter-TSS (NM_198315) promoter-TSS (NM_198315) 50 NM_001130142 4013 Hs.152944 NM_014622 ENSG00000110002 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 535 chr1 31938428 31938583 + 0 NA promoter-TSS (NM_080391) promoter-TSS (NM_080391) -118 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 26946 chr7 124088825 124088929 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -55408 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 3138 chr1 246689585 246689834 + 0 NA Intergenic LTR41|LTR|ERVL -34367 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 23975 chr6 7590088 7590227 + 0 NA promoter-TSS (NM_152551) promoter-TSS (NM_152551) -42 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 683 chr1 39576846 39576894 + 0 NA promoter-TSS (NM_003819) promoter-TSS (NM_003819) -21 NM_003819 8761 Hs.169900 NM_003819 ENSG00000090621 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein cytoplasmic 4 protein-coding 15013 chr2 11466125 11466235 + 0 NA promoter-TSS (NM_198256) promoter-TSS (NM_198256) -3 NM_001278277 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 29461 chr9 87502506 87502635 + 0 NA intron (NM_001288729, intron 2 of 25) intron (NM_001288729, intron 2 of 25) 4035 NM_001288729 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 18805 chr22 31496362 31496460 + 0 NA 5' UTR (NM_001007467, exon 1 of 33) 5' UTR (NM_001007467, exon 1 of 33) 272 NM_001258327 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 10166 chr15 57506079 57506167 + 0 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -85781 NR_104368 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 29927 chr9 114505528 114505648 + 0 NA promoter-TSS (NM_015404) promoter-TSS (NM_015404) -132 NM_015404 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 3886 chr10 73247194 73247324 + 0 NA promoter-TSS (NM_015190) promoter-TSS (NM_015190) 72 NM_015190 23234 Hs.408577 NM_015190 ENSG00000213551 DNAJC9 HDJC9|JDD1|SB73 DnaJ heat shock protein family (Hsp40) member C9 protein-coding 22981 chr5 107466358 107466489 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 204472 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 30863 chrX 84735245 84735349 + 0 NA Intergenic MER61D|LTR|ERV1 -198854 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 26996 chr7 129952823 129952927 + 0 NA promoter-TSS (NM_003344) promoter-TSS (NM_003344) 68 NM_001202498 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 24947 chr6 100202769 100202873 + 0 NA Intergenic Intergenic -208583 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 23581 chr5 154682962 154683059 + 0 NA Intergenic Intergenic -2766 NR_031638 100302284 NR_031638 ENSG00000221552 MIR1303 MIRN1303|hsa-mir-1303 microRNA 1303 ncRNA 16443 chr2 149027946 149028114 + 0 NA Intergenic Intergenic -10437 NM_177964 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 312 chr1 20696814 20696884 + 0 NA intron (NM_020816, intron 6 of 14) intron (NM_020816, intron 6 of 14) 21168 NM_020816 57576 Hs.130411 NM_020816 ENSG00000117245 KIF17 KIF17B|KIF3X|KLP-2|OSM-3 kinesin family member 17 protein-coding 25112 chr6 125790891 125790995 + 0 NA 5' UTR (NM_001199621, exon 1 of 15) 5' UTR (NM_001199621, exon 1 of 15) 180 NM_001199621 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 13492 chr18 45617424 45617528 + 0 NA intron (NM_007163, intron 1 of 19) intron (NM_007163, intron 1 of 19) 2675 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 7804 chr12 122468157 122468304 + 0 NA Intergenic Intergenic 32843 NM_017612 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 7167 chr12 57772029 57772169 + 0 NA promoter-TSS (NM_015433) promoter-TSS (NM_015433) 32 NM_005371 4234 Hs.42957 NM_005371 ENSG00000037897 METTL1 C12orf1|TRM8|TRMT8|YDL201w methyltransferase like 1 protein-coding 2435 chr1 203626696 203626845 + 0 NA promoter-TSS (NM_001001396) promoter-TSS (NM_001001396) -17 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 23112 chr5 123423377 123423506 + 0 NA intron (NM_153223, intron 1 of 20) CpG 151 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|SRTD13 centrosomal protein 120 protein-coding 370 chr1 24202060 24202228 + 0 NA intron (NR_027087, intron 1 of 2) intron (NR_027087, intron 1 of 2) 1904 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LOC284632 - uncharacterized LOC284632 ncRNA 7508 chr12 99455460 99455612 + 0 NA intron (NM_152788, intron 10 of 25) L1PB1|LINE|L1 -192214 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 15226 chr2 27211836 27211970 + 0 NA promoter-TSS (NM_080592) promoter-TSS (NM_080592) -128 NM_080592 51374 Hs.9527 NM_016085 ENSG00000138085 ATRAID APR--3|APR-3|APR3|C2orf28|HSPC013|PRO240|p18 all-trans retinoic acid induced differentiation factor protein-coding 15401 chr2 39571420 39571591 + 0 NA intron (NR_037875, intron 5 of 5) L2c|LINE|L2 -93993 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 9784 chr15 22786281 22786325 + 0 NA promoter-TSS (NM_001142275) promoter-TSS (NM_001142275) 78 NM_001142275 123606 Hs.511797 NM_144599 ENSG00000170113 NIPA1 FSP3|SPG6 non imprinted in Prader-Willi/Angelman syndrome 1 protein-coding 3398 chr10 21724873 21724977 + 0 NA intron (NM_001324297, intron 16 of 24) intron (NM_001324297, intron 16 of 24) 190280 NM_001195626 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 protein-coding 567 chr1 32964790 32964969 + 0 NA promoter-TSS (NM_001300826) promoter-TSS (NM_001300826) -66 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 18868 chr22 37607157 37607305 + 0 NA Intergenic Intergenic -1243 NM_013365 26088 Hs.499158 NM_013365 ENSG00000100083 GGA1 - golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 16103 chr2 108972290 108972402 + 0 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 17026 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 13910 chr19 2841340 2841500 + 0 NA promoter-TSS (NM_001172775) promoter-TSS (NM_001172775) -15 NM_152791 148254 Hs.47712 NM_152791 ENSG00000186300 ZNF555 - zinc finger protein 555 protein-coding 14088 chr19 10717828 10717959 + 0 NA promoter-TSS (NM_001005360) promoter-TSS (NM_001005360) -160 NM_001005361 1785 Hs.211463 NM_004945 ENSG00000079805 DNM2 CMT2M|CMTDI1|CMTDIB|DI-CMTB|DYN2|DYNII|LCCS5 dynamin 2 protein-coding 19357 chr3 38025052 38025156 + 0 NA promoter-TSS (NM_001130964) promoter-TSS (NM_001130964) -317 NR_024071 5333 Hs.80776 NM_006225 ENSG00000187091 PLCD1 NDNC3|PLC-III phospholipase C delta 1 protein-coding 18518 chr21 36989910 36990014 + 0 NA intron (NM_000411, intron 1 of 11) CpG 283 NM_000411 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 8170 chr13 41610456 41610616 + 0 NA intron (NM_015058, intron 39 of 44) intron (NM_015058, intron 39 of 44) -42141 NR_049803 100847026 NR_049803 ENSG00000102763 MIR5006 - microRNA 5006 ncRNA 4897 chr11 14892238 14892342 + 0 NA promoter-TSS (NM_024514) promoter-TSS (NM_024514) -85 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 9601 chr14 94373815 94373919 + 0 NA Intergenic Intergenic -7165 NR_110563 390502 Hs.525557 NM_006220 ENSG00000258597 SERPINA2 ARGS|ATR|PIL|SERPINA2P|psiATR serpin family A member 2 (gene/pseudogene) protein-coding 29300 chr9 77158928 77159032 + 0 NA Intergenic Intergenic -18465 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 2974 chr1 233654809 233654913 + 0 NA intron (NM_002245, intron 1 of 2) MLT1A0-int|LTR|ERVL-MaLR 30709 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 9155 chr14 61537684 61537843 + 0 NA intron (NM_006255, intron 12 of 13) intron (NM_006255, intron 12 of 13) 32431 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 14149 chr19 12881436 12881569 + 0 NA promoter-TSS (NM_001375) promoter-TSS (NM_001375) 19 NM_001375 1777 Hs.118243 NM_001375 ENSG00000105612 DNASE2 DNASE2A|DNL|DNL2 deoxyribonuclease 2, lysosomal protein-coding 25945 chr7 28612108 28612276 + 0 NA intron (NM_004904, intron 5 of 10) intron (NM_004904, intron 5 of 10) -73789 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 15417 chr2 41922300 41922423 + 0 NA Intergenic Intergenic 11362 NR_110263 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 13462 chr18 39946841 39946882 + 0 NA Intergenic Intergenic -119425 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 27266 chr7 155345000 155345173 + 0 NA Intergenic CpG 22847 NR_103545 338436 Hs.521326 NR_103545 ENSG00000204960 BLACE - B-cell acute lymphoblastic leukemia expressed ncRNA 18804 chr22 31399452 31399620 + 0 NA promoter-TSS (NM_004147) promoter-TSS (NM_004147) -17 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 26687 chr7 99714242 99714246 + 0 NA intron (NM_000765, intron 8 of 12) intron (NM_000765, intron 8 of 12) 20956 NM_000765 1551 Hs.111944 NM_000765 ENSG00000160870 CYP3A7 CP37|CYPIIIA7|P-450(HFL33)|P-450111A7|P450-HFLA cytochrome P450 family 3 subfamily A member 7 protein-coding 16364 chr2 135245269 135245295 + 0 NA intron (NM_032143, intron 12 of 20) intron (NM_032143, intron 12 of 20) 193017 NM_001172435 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 8732 chr14 23321243 23321278 + 0 NA 5' UTR (NM_004643, exon 1 of 7) 5' UTR (NM_004643, exon 1 of 7) 1072 NM_004643 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 1365 chr1 96234480 96234584 + 0 NA Intergenic Intergenic 139593 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 12971 chr17 74380652 74380756 + 0 NA Intergenic Intergenic 13198 NM_001331076 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 10491 chr15 77440534 77440638 + 0 NA intron (NM_001304504, intron 1 of 9) MLT1I|LTR|ERVL-MaLR 19935 NM_018200 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 15346 chr2 36561626 36561775 + 0 NA intron (NM_001042548, intron 5 of 8) intron (NM_001042548, intron 5 of 8) 36489 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 14597 chr19 46661459 46661563 + 0 NA promoter-TSS (NR_040041) promoter-TSS (NR_040041) 33 NR_040041 100506068 Hs.434327 NR_040041 ENSG00000245598 DACT3-AS1 - DACT3 antisense RNA 1 ncRNA 11006 chr16 10743806 10743941 + 0 NA promoter-TSS (NM_001278506) promoter-TSS (NM_001278506) 4 NM_001323597 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 7083 chr12 54018079 54018183 + 0 NA intron (NM_014620, intron 1 of 3) G-rich|Low_complexity|Low_complexity 1279 NR_003084 3222 Hs.549040 NM_018953 ENSG00000172789 HOXC5 CP11|HOX3|HOX3D homeobox C5 protein-coding 1568 chr1 115771858 115772019 + 0 NA Intergenic Intergenic -3133 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 28382 chr8 104643202 104643308 + 0 NA Intergenic MLT2D|LTR|ERVL -54231 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 ST7 LDL receptor related protein 12 protein-coding 25486 chr6 168007840 168007842 + 0 NA Intergenic LTR51|LTR|ERV1 -10032 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 15668 chr2 64779331 64779483 + 0 NA Intergenic Intergenic 84224 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 26696 chr7 100163214 100163358 + 0 NA intron (NM_024637, intron 3 of 3) intron (NM_024637, intron 3 of 3) -4565 NM_001303470 55262 Hs.533139 NM_018275 ENSG00000146826 C7orf43 - chromosome 7 open reading frame 43 protein-coding 26579 chr7 91852620 91852724 + 0 NA Intergenic L1PA17|LINE|L1 28048 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 20254 chr3 138916023 138916080 + 0 NA Intergenic CpG 27969 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 26955 chr7 125879176 125879280 + 0 NA Intergenic LTR19A|LTR|ERV1 -614937 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 17560 chr20 6994629 6994748 + 0 NA Intergenic Intergenic 226590 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 29542 chr9 92115379 92115493 + 0 NA promoter-TSS (NM_178324) promoter-TSS (NM_178324) 38 NM_178324 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 3399 chr10 21727886 21727990 + 0 NA intron (NM_001324297, intron 18 of 24) intron (NM_001324297, intron 18 of 24) 193293 NM_001195626 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 protein-coding 12472 chr17 40909471 40909560 + 0 NA Intergenic Intergenic -24272 NM_019010 54474 Hs.84905 NM_019010 ENSG00000171431 KRT20 CD20|CK-20|CK20|K20|KRT21 keratin 20 protein-coding 15117 chr2 18910994 18911098 + 0 NA Intergenic MSTB2|LTR|ERVL-MaLR 115925 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 2844 chr1 225999559 225999660 + 0 NA promoter-TSS (NM_152608) promoter-TSS (NM_152608) -244 NM_152608 163859 Hs.520192 NM_152608 ENSG00000143751 SDE2 C1orf55|dJ671D7.1 SDE2 telomere maintenance homolog protein-coding 17914 chr20 35092832 35092973 + 0 NA promoter-TSS (NM_015638) promoter-TSS (NM_015638) -87 NM_015638 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 10620 chr15 85800563 85800667 + 0 NA Intergenic Intergenic -5657 NM_022480 64410 Hs.498371 NM_022480 ENSG00000183655 KLHL25 ENC-2|ENC2 kelch like family member 25 protein-coding 5230 chr11 46159883 46159886 + 0 NA Intergenic Intergenic -12071 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 3575 chr10 35090498 35090602 + 0 NA promoter-TSS (NM_003591) promoter-TSS (NM_003591) 92 NM_001198777 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 30640 chrX 42119168 42119272 + 0 NA Intergenic Intergenic -196186 NM_001126054 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8 calcium/calmodulin dependent serine protein kinase protein-coding 13327 chr18 23627487 23627591 + 0 NA intron (NM_173505, intron 6 of 9) intron (NM_173505, intron 6 of 9) 35346 NM_001308238 147463 Hs.355689 NM_173505 ENSG00000154065 ANKRD29 - ankyrin repeat domain 29 protein-coding 3031 chr1 236517373 236517477 + 0 NA promoter-TSS (NM_201545) promoter-TSS (NM_201545) -789 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 5775 chr11 85807079 85807118 + 0 NA intron (NM_032943, intron 1 of 18) intron (NM_032943, intron 1 of 18) 4061 NM_032943 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 7075 chr12 53825437 53825541 + 0 NA Intergenic Intergenic -68455 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 17327 chr2 236078396 236078500 + 0 NA intron (NM_001037131, intron 16 of 17) MLT2C1|LTR|ERVL 89561 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 3159 chr1 248825919 248826069 + 0 NA promoter-TSS (NM_001322462) promoter-TSS (NM_001322462) -39 NM_030645 80851 Hs.298573 NM_030645 ENSG00000175137 SH3BP5L - SH3 binding domain protein 5 like protein-coding 25752 chr7 17144512 17144549 + 0 NA Intergenic Intergenic -154122 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 7392 chr12 89370846 89370993 + 0 NA Intergenic Intergenic -18060 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 30810 chrX 70454939 70455043 + 0 NA promoter-TSS (NM_001166278) promoter-TSS (NM_001166278) -105 NM_001166278 1741 Hs.721586 NM_020730 ENSG00000082458 DLG3 MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR discs large MAGUK scaffold protein 3 protein-coding 15216 chr2 26941512 26941599 + 0 NA intron (NM_001253724, intron 9 of 12) intron (NM_001253724, intron 9 of 12) -28816 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 3169 chr10 547031 547124 + 0 NA intron (NM_014974, intron 1 of 36) Charlie1|DNA|hAT-Charlie 94701 NR_049884 100847086 NR_049884 ENSG00000263511 MIR5699 mir-5699 microRNA 5699 ncRNA 23886 chr6 2810180 2810361 + 0 NA Intergenic Intergenic 31779 NR_073111 1992 Hs.381167 NM_030666 ENSG00000021355 SERPINB1 EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin family B member 1 protein-coding 18433 chr21 17689112 17689216 + 0 NA Intergenic L1PB1|LINE|L1 -76214 NM_001130914 10950 Hs.473420 NM_006806 ENSG00000154640 BTG3 ANA|APRO4|TOB5|TOB55|TOFA BTG anti-proliferation factor 3 protein-coding 20064 chr3 124887376 124887494 + 0 NA promoter-TSS (NM_002213) promoter-TSS (NM_002213) -130 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 7381 chr12 88566662 88566766 + 0 NA intron (NM_003994, intron 1 of 8) L2|LINE|L2 13759 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7 KIT ligand protein-coding 2609 chr1 211603566 211603720 + 0 NA Intergenic Intergenic -24886 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 26326 chr7 56106465 56106589 + 0 NA 5' UTR (NM_001320327, exon 1 of 4) 5' UTR (NM_001320327, exon 1 of 4) 103 NM_016139 51142 Hs.389996 NM_016139 ENSG00000106153 CHCHD2 C7orf17|MNRR1|NS2TP|PARK22 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding 10561 chr15 82046103 82046246 + 0 NA promoter-TSS (NM_032246) promoter-TSS (NM_032246) -31 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 12457 chr17 40219227 40219411 + 0 NA promoter-TSS (NM_133264) promoter-TSS (NM_133264) -3 NM_133264 147179 Hs.421622 NM_133264 ENSG00000171475 WIPF2 WICH|WIRE WAS/WASL interacting protein family member 2 protein-coding 10859 chr16 1420684 1420861 + 0 NA promoter-TSS (NM_001272051) promoter-TSS (NM_001272051) 28 NM_001272051 283951 Hs.58373 NM_001010878 ENSG00000174109 C16orf91 CCSMST1|URLC5|gs103 chromosome 16 open reading frame 91 protein-coding 17284 chr2 232440628 232440782 + 0 NA Intergenic Intergenic -15407 NM_001631 248 Hs.37009 NM_001631 ENSG00000163295 ALPI IAP alkaline phosphatase, intestinal protein-coding 5363 chr11 62411039 62411188 + 0 NA Intergenic Intergenic -7922 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 24776 chr6 71181639 71181743 + 0 NA Intergenic L2c|LINE|L2 -106751 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 14620 chr19 47515295 47515306 + 0 NA promoter-TSS (NR_038456) promoter-TSS (NR_038456) -42 NM_003827 8775 Hs.126938 NM_003827 ENSG00000105402 NAPA SNAPA NSF attachment protein alpha protein-coding 26501 chr7 82029401 82029505 + 0 NA non-coding (NR_110077, exon 4 of 4) non-coding (NR_110077, exon 4 of 4) 20276 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 17466 chr20 2386805 2386941 + 0 NA intron (NM_198994, intron 1 of 12) intron (NM_198994, intron 1 of 12) 5965 NM_001254734 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 3866 chr10 72171223 72171340 + 0 NA intron (NR_045564, intron 5 of 9) MLT1D|LTR|ERVL-MaLR -44719 NM_173473 119504 Hs.426296 NM_173473 ENSG00000166295 ANAPC16 APC16|C10orf104|CENP-27|MSAG|bA570G20.3 anaphase promoting complex subunit 16 protein-coding 8544 chr13 105587949 105588053 + 0 NA Intergenic Intergenic -82320 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 4741 chr11 6319787 6320010 + 0 NA intron (NM_145040, intron 1 of 1) G-rich|Low_complexity|Low_complexity 612 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 3781 chr10 63629528 63629675 + 0 NA Intergenic Intergenic -107526 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 29640 chr9 97046373 97046515 + 0 NA Intergenic Intergenic -6801 NM_001201575 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 9898 chr15 39115177 39115190 + 0 NA Intergenic L1PA16|LINE|L1 -135486 NR_144507 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 7099 chr12 55068614 55068686 + 0 NA Intergenic Intergenic 48705 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 6284 chr11 125405005 125405109 + 0 NA intron (NM_022062, intron 7 of 12) intron (NM_022062, intron 7 of 12) -90157 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 30141 chr9 127417340 127417444 + 0 NA Intergenic Intergenic -6982 NM_001286697 7633 Hs.522399 NM_007135 ENSG00000196152 ZNF79 pT7 zinc finger protein 79 protein-coding 28925 chr9 12814616 12814720 + 0 NA promoter-TSS (NR_125775) promoter-TSS (NR_125775) -279 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 16815 chr2 190319950 190320054 + 0 NA promoter-TSS (NM_014362) promoter-TSS (NM_014362) 43 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 26864 chr7 116210415 116210571 + 0 NA promoter-TSS (NM_015641) promoter-TSS (NM_015641) 0 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 4689 chr11 1834333 1834462 + 0 NA promoter-TSS (NM_001290332) promoter-TSS (NM_001290332) 87 NM_001290332 90019 Hs.161031 NM_138567 ENSG00000149043 SYT8 - synaptotagmin 8 protein-coding 27211 chr7 149624647 149624801 + 0 NA promoter-TSS (NR_027788) promoter-TSS (NR_027788) 66 NR_027788 79970 Hs.520785 NM_024910 ENSG00000133624 ZNF767P ZNF767 zinc finger family member 767, pseudogene pseudo 19203 chr3 14948431 14948566 + 0 NA promoter-TSS (NR_046255) promoter-TSS (NR_046255) -57 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 14618 chr19 47349159 47349263 + 0 NA promoter-TSS (NM_014681) promoter-TSS (NM_014681) -70 NM_014681 9704 Hs.151706 NM_014681 ENSG00000134815 DHX34 DDX34|HRH1 DExH-box helicase 34 protein-coding 23842 chr5 180831601 180831742 + 0 NA promoter-TSS (NR_045680) promoter-TSS (NR_045680) -53 NR_045680 100859930 Hs.655606 NR_045680 ENSG00000278970 HEIH HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA ncRNA 22735 chr5 74916928 74917009 + 0 NA Intergenic MSTD|LTR|ERVL-MaLR -50130 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 17945 chr20 36085940 36086014 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -5527 NM_001258331 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 12354 chr17 34981124 34981287 + 0 NA intron (NM_013975, intron 1 of 19) CpG 707 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2 DNA ligase 3 protein-coding 16677 chr2 173963901 173964043 + 0 NA 5' UTR (NM_001017371, exon 1 of 5) 5' UTR (NM_001017371, exon 1 of 5) 247 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 19362 chr3 38346738 38346868 + 0 NA promoter-TSS (NM_005108) promoter-TSS (NM_005108) 43 NM_005108 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 2035 chr1 168340903 168341007 + 0 NA Intergenic MER31-int|LTR|ERV1 -34569 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 31178 chrX 154097720 154097826 + 0 NA promoter-TSS (NM_004992) promoter-TSS (NM_004992) -42 NM_004992 4204 Hs.200716 NM_004992 ENSG00000169057 MECP2 AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT methyl-CpG binding protein 2 protein-coding 30972 chrX 110318195 110318236 + 0 NA promoter-TSS (NM_015365) promoter-TSS (NM_015365) -63 NM_001025580 9949 Hs.656243 NM_015365 ENSG00000101935 AMMECR1 AMMERC1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding 24634 chr6 47035049 47035221 + 0 NA intron (NM_153840, intron 1 of 14) MamRTE1|LINE|RTE-BovB 7228 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 197 chr1 14742205 14742308 + 0 NA intron (NM_201628, intron 1 of 14) L2a|LINE|L2 143539 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 28742 chr8 134778219 134778375 + 0 NA Intergenic Intergenic 22310 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 13153 chr17 82098232 82098382 + 0 NA promoter-TSS (NM_004104) promoter-TSS (NM_004104) -77 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 4024 chr10 86711276 86711380 + 0 NA intron (NM_001080114, intron 8 of 12) CpG 42659 NM_007078 11155 Hs.657271 NM_007078 ENSG00000122367 LDB3 CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP LIM domain binding 3 protein-coding 5187 chr11 37505025 37505062 + 0 NA Intergenic Intergenic -433558 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 20227 chr3 136961490 136961576 + 0 NA intron (NM_144717, intron 1 of 6) L1MC4a|LINE|L1 3668 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 8576 chr13 108215461 108215623 + 0 NA promoter-TSS (NM_001330595) promoter-TSS (NM_001330595) -8 NM_001330595 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 27545 chr8 23897145 23897249 + 0 NA Intergenic Intergenic -42390 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 14068 chr19 10269575 10269721 + 0 NA Intergenic CpG -1193 NM_000201 3383 Hs.643447 NM_000201 ENSG00000090339 ICAM1 BB2|CD54|P3.58 intercellular adhesion molecule 1 protein-coding 29454 chr9 87179646 87179671 + 0 NA Intergenic Intergenic 31014 NM_001001709 401535 Hs.657740 NM_001001709 C9orf170 - chromosome 9 open reading frame 170 protein-coding 28376 chr8 104223135 104223239 + 0 NA promoter-TSS (NM_001282882) promoter-TSS (NM_001282882) -148 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 23508 chr5 150317261 150317382 + 0 NA Intergenic Intergenic -14359 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 6265 chr11 124673750 124673909 + 0 NA promoter-TSS (NM_017425) promoter-TSS (NM_017425) -15 NM_017425 53340 Hs.286233 NM_017425 ENSG00000064199 SPA17 CT22|SP17|SP17-1 sperm autoantigenic protein 17 protein-coding 4393 chr10 114306723 114306827 + 0 NA intron (NM_032550, intron 10 of 18) intron (NM_032550, intron 10 of 18) 67161 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|NET42 von Willebrand factor A domain containing 2 protein-coding 20426 chr3 152359960 152359978 + 0 NA intron (NM_001314057, intron 2 of 11) intron (NM_001314057, intron 2 of 11) -18979 NR_132656 645843 Hs.632562 NM_001123228 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 2136 chr1 178726335 178726439 + 0 NA intron (NM_152663, intron 1 of 19) intron (NM_152663, intron 1 of 19) 1240 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 29726 chr9 104740782 104740886 + 0 NA Intergenic Intergenic -6734 NM_001329570 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 23862 chr6 1287283 1287445 + 0 NA Intergenic Intergenic -25076 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 2685 chr1 215567192 215567296 + 0 NA promoter-TSS (NM_001319294) promoter-TSS (NM_001319294) -135 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 19733 chr3 98538619 98538723 + 0 NA Intergenic Tigger12|DNA|TcMar-Tigger 6772 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 24315 chr6 30122656 30122810 + 0 NA Intergenic L2a|LINE|L2 -9627 NR_134870 11074 Hs.493275 NM_007028 ENSG00000204616 TRIM31 C6orf13|HCG1|HCGI|RNF tripartite motif containing 31 protein-coding 3028 chr1 236455324 236455477 + 0 NA intron (NM_145861, intron 4 of 5) intron (NM_145861, intron 4 of 5) 59984 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 23000 chr5 109656953 109657057 + 0 NA Intergenic Intergenic -32361 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 13119 chr17 81142846 81142980 + 0 NA intron (NM_001080395, intron 1 of 13) intron (NM_001080395, intron 1 of 13) -9605 NR_031652 100302229 NR_031652 ENSG00000221025 MIR1250 MIRN1250|hsa-mir-1250|mir-1250 microRNA 1250 ncRNA 3978 chr10 80078985 80079007 + 0 NA promoter-TSS (NM_001270367) promoter-TSS (NM_001270367) -27 NM_001270367 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 24310 chr6 30075992 30076146 + 0 NA promoter-TSS (NM_025236) promoter-TSS (NM_025236) -218 NM_025236 80352 Hs.121178 NM_025236 ENSG00000204618 RNF39 HZF|HZFW|LIRF ring finger protein 39 protein-coding 18720 chr22 26417007 26417111 + 0 NA Intergenic Intergenic -12255 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 1111 chr1 70353781 70353885 + 0 NA promoter-TSS (NM_001031693) promoter-TSS (NM_001031693) 901 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 8500 chr13 99481539 99481628 + 0 NA Intergenic Intergenic 17723 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 23209 chr5 132389810 132389944 + 0 NA intron (NM_003060, intron 6 of 9) intron (NM_003060, intron 6 of 9) -19961 NR_110997 553103 Hs.570908 NR_110997 ENSG00000233006 LOC553103 - uncharacterized LOC553103 ncRNA 16482 chr2 153354585 153354689 + 0 NA Intergenic Intergenic 124171 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator candidate protein-coding 11459 chr16 62254056 62254210 + 0 NA Intergenic LTR43B|LTR|ERV1 -217298 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 8771 chr14 24861115 24861238 + 0 NA intron (NM_001304476, intron 3 of 6) intron (NM_001304476, intron 3 of 6) 187824 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 13535 chr18 48848753 48848879 + 0 NA intron (NM_014772, intron 10 of 11) intron (NM_014772, intron 10 of 11) 93991 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 22136 chr5 218101 218227 + 0 NA promoter-TSS (NM_001330758) promoter-TSS (NM_001330758) 18 NM_145265 133957 Hs.294145 NM_145265 ENSG00000164366 CCDC127 - coiled-coil domain containing 127 protein-coding 14194 chr19 14777065 14777192 + 0 NA promoter-TSS (NM_001271052) promoter-TSS (NM_001271052) -201 NM_001271052 30817 Hs.531619 NM_013447 ENSG00000127507 ADGRE2 CD312|EMR2|VBU adhesion G protein-coupled receptor E2 protein-coding 17594 chr20 10706003 10706144 + 0 NA Intergenic Intergenic -32027 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|HJ1|JAGL1 jagged 1 protein-coding 23759 chr5 175246450 175246641 + 0 NA Intergenic L2a|LINE|L2 197615 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 10936 chr16 4136289 4136441 + 0 NA Intergenic Intergenic -20180 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 27741 chr8 41828247 41828334 + 0 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) -30668 NM_020476 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 27245 chr7 152146192 152146213 + 0 NA intron (NM_170606, intron 53 of 58) intron (NM_170606, intron 53 of 58) 120528 NM_022087 63917 Hs.647109 NM_022087 ENSG00000178234 GALNT11 GALNAC-T11|GALNACT11 polypeptide N-acetylgalactosaminyltransferase 11 protein-coding 24598 chr6 43629270 43629450 + 0 NA promoter-TSS (NM_019096) promoter-TSS (NM_019096) -114 NM_019096 54676 Hs.485449 NM_019096 ENSG00000172432 GTPBP2 - GTP binding protein 2 protein-coding 25827 chr7 21945848 21945998 + 0 NA promoter-TSS (NM_001127370) promoter-TSS (NM_001127370) 1 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 7269 chr12 74890329 74890433 + 0 NA Intergenic Intergenic 319367 NM_001260498 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 2388 chr1 201983033 201983139 + 0 NA promoter-TSS (NM_001319182) promoter-TSS (NM_001319182) -244 NM_001319182 6051 Hs.497391 NM_020216 ENSG00000176393 RNPEP AP-B arginyl aminopeptidase protein-coding 11195 chr16 29779573 29779706 + 0 NA intron (NM_152338, intron 3 of 3) intron (NM_152338, intron 3 of 3) 1399 NM_152338 653808 Hs.632195 NM_152338 ENSG00000174992 ZG16 JCLN|JCLN1|ZG16A zymogen granule protein 16 protein-coding 27826 chr8 52843992 52844128 + 0 NA Intergenic Intergenic -95848 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 28602 chr8 125594139 125594219 + 0 NA Intergenic Intergenic 161970 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 17413 chr20 290660 290764 + 0 NA promoter-TSS (NM_080571) promoter-TSS (NM_080571) 66 NM_153269 140680 Hs.348112 NM_080571 ENSG00000196476 C20orf96 dJ1103G7.2 chromosome 20 open reading frame 96 protein-coding 28009 chr8 71327646 71327750 + 0 NA intron (NM_172060, intron 2 of 15) intron (NM_172060, intron 2 of 15) 28813 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 26825 chr7 111931149 111931253 + 0 NA intron (NM_014705, intron 12 of 51) intron (NM_014705, intron 12 of 51) 122696 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 8224 chr13 46135259 46135419 + 0 NA intron (NM_002298, intron 13 of 15) intron (NM_002298, intron 13 of 15) -30263 NM_001278541 1361 Hs.512937 NM_001872 ENSG00000080618 CPB2 CPU|PCPB|TAFI carboxypeptidase B2 protein-coding 15639 chr2 62537281 62537423 + 0 NA Intergenic MER61C|LTR|ERV1 -30883 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 13471 chr18 43719654 43719738 + 0 NA Intergenic L1PA10|LINE|L1 -442046 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 617 chr1 35882987 35883091 + 0 NA promoter-TSS (NM_001317122) promoter-TSS (NM_001317122) -156 NM_012199 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute 1, RISC catalytic component protein-coding 8840 chr14 34298010 34298114 + 0 NA Intergenic MER50C|LTR|ERV1 164200 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 10850 chr16 1025369 1025473 + 0 NA Intergenic Intergenic 43613 NM_014587 30812 Hs.243678 NM_014587 ENSG00000005513 SOX8 - SRY-box 8 protein-coding 6932 chr12 47018094 47018106 + 0 NA Intergenic Intergenic -61503 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 22161 chr5 2685826 2685930 + 0 NA Intergenic Intergenic 65777 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 3821 chr10 69385566 69385692 + 0 NA intron (NM_033498, intron 15 of 20) L2c|LINE|L2 31289 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 26816 chr7 110534647 110534774 + 0 NA Intergenic Intergenic -556296 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 18792 chr22 30802954 30803105 + 0 NA intron (NM_001282740, intron 1 of 12) CpG -19487 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 6447 chr12 1796269 1796373 + 0 NA intron (NM_172364, intron 35 of 37) CpG -23946 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 18773 chr22 29994535 29994602 + 0 NA intron (NM_153051, intron 7 of 18) intron (NM_153051, intron 7 of 18) -12481 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 8254 chr13 49063657 49063756 + 0 NA intron (NR_103528, intron 2 of 25) LTR23|LTR|ERV1 -46597 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 26179 chr7 44796515 44796650 + 0 NA promoter-TSS (NM_001300981) promoter-TSS (NM_001300981) -54 NM_021130 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 17486 chr20 3544238 3544312 + 0 NA intron (NM_139321, intron 3 of 28) intron (NM_139321, intron 3 of 28) 73257 NM_001207047 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 19492 chr3 49238828 49238932 + 0 NA intron (NM_001135197, intron 3 of 7) LTR4|LTR|ERV1 -35240 NR_036233 100422952 NR_036233 ENSG00000264633 MIR4271 - microRNA 4271 ncRNA 16504 chr2 157257606 157257710 + 0 NA promoter-TSS (NM_001329868) promoter-TSS (NM_001329868) 60 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 11832 chr16 88570192 88570370 + 0 NA promoter-TSS (NM_001294340) promoter-TSS (NM_001294340) -100 NM_144604 124245 Hs.93670 NM_144604 ENSG00000158545 ZC3H18 NHN1 zinc finger CCCH-type containing 18 protein-coding 24396 chr6 32668465 32668494 + 0 NA Intergenic Intergenic -1790 NM_001243961 3119 Hs.409934 NM_002123 ENSG00000179344 HLA-DQB1 CELIAC1|HLA-DQB|IDDM1 major histocompatibility complex, class II, DQ beta 1 protein-coding 29320 chr9 78439662 78439766 + 0 NA Intergenic Intergenic 142639 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 23192 chr5 131264009 131264042 + 0 NA promoter-TSS (NM_001038702) promoter-TSS (NM_001038702) 16 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 6435 chr12 949605 949709 + 0 NA promoter-TSS (NM_001297421) promoter-TSS (NM_001297421) 65 NR_123713 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 25165 chr6 133198836 133198940 + 0 NA Intergenic Intergenic -42469 NM_172103 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 23374 chr5 141619153 141619216 + 0 NA promoter-TSS (NM_001314007) promoter-TSS (NM_001314007) -129 NM_005219 1729 Hs.529451 NM_005219 ENSG00000131504 DIAPH1 DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1 diaphanous related formin 1 protein-coding 887 chr1 53889779 53889907 + 0 NA promoter-TSS (NM_018982) promoter-TSS (NM_018982) -12 NR_135075 54432 Hs.11923 NM_018982 ENSG00000058799 YIPF1 DJ167A19.1|FinGER1 Yip1 domain family member 1 protein-coding 26470 chr7 77696289 77696454 + 0 NA promoter-TSS (NR_134251) promoter-TSS (NR_134251) -55 NM_198467 222194 Hs.72451 NM_198467 ENSG00000187257 RSBN1L - round spermatid basic protein 1 like protein-coding 25228 chr6 139375425 139375546 + 0 NA promoter-TSS (NM_006079) promoter-TSS (NM_006079) -835 NM_006079 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 72 chr1 6108980 6109032 + 0 NA intron (NM_015557, intron 38 of 41) intron (NM_015557, intron 38 of 41) 62892 NM_001199863 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 27904 chr8 59394828 59394952 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger -275682 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 30929 chrX 107135861 107135965 + 0 NA intron (NR_033676, intron 6 of 6) Tigger7|DNA|TcMar-Tigger -17086 NM_001171080 55285 Hs.139053 NM_018301 ENSG00000089682 RBM41 - RNA binding motif protein 41 protein-coding 18128 chr20 47317402 47317546 + 0 NA intron (NM_001281769, intron 2 of 3) intron (NM_001281769, intron 2 of 3) -1028 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 3371 chr10 20891526 20891659 + 0 NA intron (NM_006393, intron 2 of 27) intron (NM_006393, intron 2 of 27) 6010 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 23028 chr5 112878892 112878996 + 0 NA intron (NM_005669, intron 4 of 4) intron (NM_005669, intron 4 of 4) 17756 NM_001204194 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 20107 chr3 128650800 128650939 + 0 NA promoter-TSS (NM_002950) promoter-TSS (NM_002950) 7 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 28583 chr8 124655403 124655507 + 0 NA intron (NM_001282974, intron 3 of 13) intron (NM_001282974, intron 3 of 13) 73052 NM_001282971 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS1, I-BAR domain containing protein-coding 7812 chr12 122894750 122894880 + 0 NA intron (NM_024667, intron 1 of 3) intron (NM_024667, intron 1 of 3) 1350 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B, ESCRT-I subunit protein-coding 27909 chr8 59932662 59932700 + 0 NA Intergenic Zaphod3|DNA|hAT-Tip100 348742 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 27866 chr8 55901669 55901773 + 0 NA intron (NM_002350, intron 1 of 12) intron (NM_002350, intron 1 of 12) 21894 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 23167 chr5 128538307 128538411 + 0 NA promoter-TSS (NM_001999) promoter-TSS (NM_001999) -317 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 18569 chr21 42893225 42893237 + 0 NA promoter-TSS (NM_001001503) promoter-TSS (NM_001001503) -37 NM_001001503 4731 Hs.473937 NM_021075 ENSG00000160194 NDUFV3 CI-10k|CI-9KD NADH:ubiquinone oxidoreductase subunit V3 protein-coding 13025 chr17 75872893 75873054 + 0 NA Intergenic Intergenic 5602 NM_033452 91107 Hs.293660 NM_033452 ENSG00000132481 TRIM47 GOA|RNF100 tripartite motif containing 47 protein-coding 15109 chr2 17899952 17900056 + 0 NA intron (NM_002252, intron 1 of 2) intron (NM_002252, intron 1 of 2) 21347 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 12649 chr17 49764297 49764420 + 0 NA promoter-TSS (NM_030802) promoter-TSS (NM_030802) -202 NM_030802 81558 Hs.514308 NM_030802 ENSG00000121104 FAM117A - family with sequence similarity 117 member A protein-coding 7672 chr12 112938384 112938516 + 0 NA promoter-TSS (NM_006187) promoter-TSS (NM_006187) 17 NM_006187 4940 Hs.528634 NM_006187 ENSG00000111331 OAS3 p100|p100OAS 2'-5'-oligoadenylate synthetase 3 protein-coding 15569 chr2 55051248 55051402 + 0 NA promoter-TSS (NM_001321859) promoter-TSS (NM_001321859) -508 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 19674 chr3 75435610 75435751 + 0 NA promoter-TSS (NR_024241) promoter-TSS (NR_024241) -565 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86 member D, pseudogene pseudo 15828 chr2 74454879 74455019 + 0 NA promoter-TSS (NM_031288) promoter-TSS (NM_031288) -74 NM_031288 83444 Hs.410786 NM_031288 ENSG00000115274 INO80B HMGA1L4|HMGIYL4|IES2|PAP-1BP|PAPA-1|PAPA1|ZNHIT4|hIes2 INO80 complex subunit B protein-coding 8234 chr13 47111033 47111136 + 0 NA Intergenic HERV1_I-int|LTR|ERV1 -214008 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 18307 chr20 57243904 57243944 + 0 NA intron (NM_001719, intron 1 of 6) intron (NM_001719, intron 1 of 6) 22727 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 24250 chr6 27132853 27132886 + 0 NA promoter-TSS (NM_021058) promoter-TSS (NM_021058) -73 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 29369 chr9 82354414 82354537 + 0 NA Intergenic MamGypLTR3a|LTR|Gypsy 365703 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 27809 chr8 51925178 51925282 + 0 NA Intergenic MER61C|LTR|ERV1 -26044 NM_001286783 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 24376 chr6 31777115 31777217 + 0 NA TTS (NM_006295).4 TTS (NM_006295).4 165 NM_025258 80737 Hs.558553 NM_025258 ENSG00000204396 VWA7 C6orf27|G7c|NG37 von Willebrand factor A domain containing 7 protein-coding 16574 chr2 163123645 163123749 + 0 NA Intergenic L1MCb|LINE|L1 -284950 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 16011 chr2 99337262 99337396 + 0 NA promoter-TSS (NM_005783) promoter-TSS (NM_005783) -42 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 11815 chr16 87457934 87458038 + 0 NA intron (NM_015144, intron 2 of 12) intron (NM_015144, intron 2 of 12) 33868 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 2257 chr1 190022904 190022999 + 0 NA Intergenic L1MC1|LINE|L1 453059 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 18729 chr22 26672929 26673033 + 0 NA non-coding (NR_003491, exon 5 of 5) non-coding (NR_003491, exon 5 of 5) 138 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor (non-protein coding) ncRNA 9696 chr14 102097513 102097655 + 0 NA intron (NM_001017963, intron 2 of 11) intron (NM_001017963, intron 2 of 11) -10409 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 3973 chr10 79317867 79317971 + 0 NA Intergenic Intergenic -29545 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 2444 chr1 203860445 203860599 + 0 NA Intergenic MIRb|SINE|MIR -1063 NM_001304464 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 24716 chr6 53794381 53794385 + 0 NA promoter-TSS (NM_018214) promoter-TSS (NM_018214) -597 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 725 chr1 41860330 41860434 + 0 NA intron (NR_038260, intron 1 of 2) intron (NR_038260, intron 1 of 2) 58325 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 4088 chr10 93384157 93384294 + 0 NA intron (NM_133337, intron 18 of 52) intron (NM_133337, intron 18 of 52) 98092 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 22937 chr5 97183741 97183869 + 0 NA promoter-TSS (NM_018343) promoter-TSS (NM_018343) -504 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 22767 chr5 78359963 78360047 + 0 NA promoter-TSS (NM_004866) promoter-TSS (NM_004866) -498 NR_110885 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 10440 chr15 74423114 74423218 + 0 NA intron (NM_001146029, intron 1 of 12) intron (NM_001146029, intron 1 of 12) 10538 NM_001146030 8482 Hs.24640 NM_003612 ENSG00000138623 SEMA7A CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL semaphorin 7A (John Milton Hagen blood group) protein-coding 5348 chr11 61638399 61638433 + 0 NA non-coding (NR_002775, exon 5 of 5) non-coding (NR_002775, exon 5 of 5) 23380 NR_002775 113157 Hs.502733 NR_002775 ENSG00000243742 RPLP0P2 RPLP0L2|RPLP0_3_1146 ribosomal protein lateral stalk subunit P0 pseudogene 2 pseudo 3252 chr10 6291406 6291498 + 0 NA Intergenic AluSz|SINE|Alu -35092 NR_040079 399715 NR_040079 ENSG00000215244 LOC399715 - uncharacterized LOC399715 ncRNA 13084 chr17 78958728 78958785 + 0 NA Intergenic Intergenic 21223 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 11449 chr16 61323570 61323674 + 0 NA Intergenic MER61D|LTR|ERV1 -267856 NR_039624 100616345 NR_039624 MIR4426 - microRNA 4426 ncRNA 27021 chr7 131538566 131538731 + 0 NA intron (NM_001018111, intron 1 of 8) intron (NM_001018111, intron 1 of 8) 17969 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 24779 chr6 71404773 71404910 + 0 NA Intergenic Intergenic -1220 NR_029504 407029 NR_029504 ENSG00000207827 MIR30A MIRN30A|mir-30a microRNA 30a ncRNA 4048 chr10 89278307 89278461 + 0 NA Intergenic Intergenic -23565 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 20037 chr3 122894288 122894380 + 0 NA Intergenic Intergenic 7821 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 5429 chr11 64270039 64270170 + 0 NA TTS (NM_000932) TTS (NM_000932) -14235 NM_001170726 56834 Hs.523763 NM_020155 ENSG00000173264 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding 15275 chr2 28894505 28894609 + 0 NA promoter-TSS (NM_015131) promoter-TSS (NM_015131) -86 NM_015131 23160 Hs.622982 NM_015131 ENSG00000163811 WDR43 NET12|UTP5 WD repeat domain 43 protein-coding 19263 chr3 24365259 24365363 + 0 NA intron (NM_001128176, intron 1 of 10) intron (NM_001128176, intron 1 of 10) -128776 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 11818 chr16 87493057 87493187 + 0 NA Intergenic CpG-10077 -1065 NR_110943 101928737 Hs.579009 NR_110943 ENSG00000260750 LOC101928737 - uncharacterized LOC101928737 ncRNA 26515 chr7 84219376 84219480 + 0 NA Intergenic Intergenic -24527 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 23849 chr5 181246434 181246538 + 0 NA promoter-TSS (NR_109909) promoter-TSS (NR_109909) -55 NR_109909 101928649 Hs.723307 NR_109909 CTC-338M12.4 - uncharacterized LOC101928649 ncRNA 26147 chr7 43569514 43569618 + 0 NA Intergenic Intergenic -13527 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 1326 chr1 93909568 93909641 + 0 NA promoter-TSS (NM_002061) promoter-TSS (NM_002061) -6 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 24426 chr6 34224112 34224210 + 0 NA Intergenic CpG -12639 NM_001319079 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 28799 chr8 143013439 143013593 + 0 NA intron (NR_026913, intron 1 of 1) intron (NR_026913, intron 1 of 1) 4874 NR_026913 100133669 Hs.195309 NR_026913 LOC100133669 - uncharacterized LOC100133669 ncRNA 23944 chr6 6008660 6008764 + 0 NA Intergenic CpG -1107 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 22849 chr5 88660989 88661017 + 0 NA intron (NR_015436, intron 3 of 4) CpG 5936 NR_030741 407047 NR_030741 ENSG00000245526 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 10175 chr15 57873938 57874042 + 0 NA Intergenic L1MB7|LINE|L1 140107 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 23567 chr5 154038830 154038948 + 0 NA promoter-TSS (NM_005927) promoter-TSS (NM_005927) 49 NM_001317995 10827 Hs.166551 NM_018691 ENSG00000055147 FAM114A2 133K02|C5orf3 family with sequence similarity 114 member A2 protein-coding 9038 chr14 54665142 54665151 + 0 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -89642 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 28626 chr8 127035968 127036029 + 0 NA Intergenic Intergenic 22844 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 19644 chr3 69084850 69084975 + 0 NA promoter-TSS (NM_006407) promoter-TSS (NM_006407) -27 NM_006407 10550 Hs.518060 NM_006407 ENSG00000144746 ARL6IP5 DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx ADP ribosylation factor like GTPase 6 interacting protein 5 protein-coding 12348 chr17 34361665 34361769 + 0 NA intron (NM_002981, intron 2 of 2) intron (NM_002981, intron 2 of 2) 1516 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 15831 chr2 74472605 74472739 + 0 NA TTS (NM_032779) TTS (NM_032779) 143 NM_053050 116540 Hs.534527 NM_053050 ENSG00000204822 MRPL53 L53MT mitochondrial ribosomal protein L53 protein-coding 2637 chr1 212567196 212567345 + 0 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) 1936 NM_001030287 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 11219 chr16 30418042 30418211 + 0 NA exon (NM_001142305, exon 3 of 3) exon (NM_001142305, exon 3 of 3) 10712 NM_016643 51333 Hs.148584 NM_016643 ENSG00000179965 ZNF771 DSC43 zinc finger protein 771 protein-coding 16765 chr2 181784578 181784682 + 0 NA Intergenic Intergenic -103965 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 14993 chr2 10448313 10448462 + 0 NA promoter-TSS (NM_001287190) promoter-TSS (NM_001287190) 167 NM_002539 4953 Hs.467701 NM_002539 ENSG00000115758 ODC1 ODC ornithine decarboxylase 1 protein-coding 6509 chr12 6336381 6336485 + 0 NA intron (NR_144351, intron 1 of 8) intron (NR_144351, intron 1 of 8) 5684 NR_144351 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 19504 chr3 49900754 49900809 + 0 NA intron (NM_001244937, intron 1 of 18) intron (NM_001244937, intron 1 of 18) 2856 NM_001244937 4486 Hs.517973 NM_002447 ENSG00000164078 MST1R CD136|CDw136|NPCA3|PTK8|RON macrophage stimulating 1 receptor protein-coding 589 chr1 33470659 33470763 + 0 NA Intergenic (TCCTC)n|Simple_repeat|Simple_repeat -1920 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 23561 chr5 153267643 153267664 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger -222871 NM_001258020 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 29621 chr9 96339811 96339980 + 0 NA intron (NM_007001, intron 8 of 11) intron (NM_007001, intron 8 of 11) -37743 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 23551 chr5 151745375 151745479 + 0 NA intron (NM_004045, intron 3 of 3) intron (NM_004045, intron 3 of 3) 13222 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 13876 chr19 1876144 1876250 + 0 NA TTS (NM_001130111) TTS (NM_001130111) 9322 NM_001130111 81926 Hs.465542 NM_031213 ENSG00000129968 ABHD17A C19orf27|FAM108A1 abhydrolase domain containing 17A protein-coding 9864 chr15 35306740 35306798 + 0 NA Intergenic Intergenic 65595 NR_037507 100500904 NR_037507 ENSG00000265102 MIR3942 - microRNA 3942 ncRNA 28534 chr8 121155481 121155585 + 0 NA Intergenic MIR|SINE|MIR -343464 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 8939 chr14 45527149 45527253 + 0 NA Intergenic L1PA16|LINE|L1 -273799 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 24308 chr6 30061217 30061288 + 0 NA promoter-TSS (NM_001278785).5 promoter-TSS (NM_001278785).5 12 NM_001278786 30834 Hs.57813 NM_014596 ENSG00000066379 ZNRD1 HTEX-6|HTEX6|Rpa12|TCTEX6|TEX6|ZR14|hZR14|tctex-6 zinc ribbon domain containing 1 protein-coding 12188 chr17 18850226 18850343 + 0 NA Intergenic Intergenic -6015 NM_001243936 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 13551 chr18 49487245 49487390 + 0 NA promoter-TSS (NM_001035005) promoter-TSS (NM_001035005) -43 NM_001199346 497661 Hs.603040 NM_001035005 ENSG00000177576 C18orf32 - chromosome 18 open reading frame 32 protein-coding 150 chr1 10430720 10430824 + 0 NA promoter-TSS (NR_036462) promoter-TSS (NR_036462) 25 NM_001243768 100526739 Hs.412311 NM_198544 ENSG00000251503 APITD1-CORT - APITD1-CORT readthrough protein-coding 22760 chr5 77492245 77492303 + 0 NA 5' UTR (NM_018268, exon 1 of 13) 5' UTR (NM_018268, exon 1 of 13) 266 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 7000 chr12 50620771 50620788 + 0 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 115794 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 245 chr1 16948550 16948586 + 0 NA intron (NM_014675, intron 18 of 36) intron (NM_014675, intron 18 of 36) 26618 NM_014675 9696 Hs.309403 NM_014675 ENSG00000058453 CROCC ROLT|TAX1BP2 ciliary rootlet coiled-coil, rootletin protein-coding 2511 chr1 206895435 206895539 + 0 NA Intergenic Intergenic -1956 NM_001185156 11009 Hs.58831 NM_006850 ENSG00000162892 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 30835 chrX 74292621 74292775 + 0 NA intron (NR_028379, intron 1 of 6) CpG 876 NR_028379 100302692 Hs.349570 NR_028379 ENSG00000230590 FTX LINC00182|MIR374AHG|NCRNA00182 FTX transcript, XIST regulator (non-protein coding) ncRNA 7203 chr12 62785993 62786097 + 0 NA intron (NM_020700, intron 4 of 9) intron (NM_020700, intron 4 of 9) 148840 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 28597 chr8 125498323 125498427 + 0 NA Intergenic Intergenic 66166 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 25679 chr7 12139602 12139706 + 0 NA Intergenic L1M5|LINE|L1 -71568 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B - transmembrane protein 106B protein-coding 11410 chr16 56861411 56861515 + 0 NA Intergenic Intergenic 2945 NR_029680 406930 NR_029680 ENSG00000207649 MIR138-2 MIRN138-2|mir-138-2 microRNA 138-2 ncRNA 20214 chr3 135927359 135927463 + 0 NA Intergenic Intergenic -38262 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 12941 chr17 72407541 72407639 + 0 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 64779 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 4994 chr11 20011428 20011497 + 0 NA intron (NM_182964, intron 11 of 37) MIR|SINE|MIR -11094 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 3012 chr1 235328897 235329019 + 0 NA promoter-TSS (NM_016374) promoter-TSS (NM_016374) 404 NR_036605 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 11557 chr16 69330507 69330665 + 0 NA promoter-TSS (NM_022341) promoter-TSS (NM_022341) 9 NM_022341 64146 Hs.130849 NM_022341 ENSG00000258429 PDF - peptide deformylase (mitochondrial) protein-coding 21308 chr4 40514958 40515062 + 0 NA intron (NM_001098634, intron 2 of 6) intron (NM_001098634, intron 2 of 6) 963 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 1099 chr1 68975726 68975753 + 0 NA Intergenic Intergenic -478518 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 21506 chr4 81471978 81472106 + 0 NA promoter-TSS (NM_001300735) promoter-TSS (NM_001300735) -114 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 18843 chr22 36368588 36368647 + 0 NA intron (NM_002473, intron 1 of 40) intron (NM_002473, intron 1 of 40) 19450 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 28398 chr8 106456151 106456255 + 0 NA intron (NM_001198532, intron 1 of 15) MIR1_Amn|SINE|MIR 8279 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 23994 chr6 8175188 8175292 + 0 NA Intergenic L1ME3A|LINE|L1 -72645 NM_004280 9521 Hs.602353 NM_004280 ENSG00000124802 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 5311 chr11 59273444 59273592 + 0 NA Intergenic LTR77|LTR|ERV1 -60497 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1 macrophage expressed 1 protein-coding 14488 chr19 42199647 42199720 + 0 NA exon (NM_001270615, exon 5 of 5) exon (NM_001270615, exon 5 of 5) 18109 NM_001270615 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 5083 chr11 30585461 30585565 + 0 NA intron (NM_001145399, intron 1 of 6) CpG 870 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 4962 chr11 18526913 18526999 + 0 NA promoter-TSS (NM_006292) promoter-TSS (NM_006292) 0 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 19501 chr3 49786563 49786703 + 0 NA promoter-TSS (NM_001242829) promoter-TSS (NM_001242829) -93 NM_153273 9807 Hs.386168 NM_153273 ENSG00000176095 IP6K1 IHPK1|PiUS inositol hexakisphosphate kinase 1 protein-coding 16839 chr2 191169574 191169678 + 0 NA Intergenic Intergenic -18030 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 12276 chr17 28854921 28855078 + 0 NA promoter-TSS (NM_001317985) promoter-TSS (NM_001317985) 42 NM_005702 26284 Hs.3426 NM_005702 ENSG00000132591 ERAL1 CEGA|ERA|ERA-W|ERAL1A|H-ERA|HERA-A|HERA-B Era like 12S mitochondrial rRNA chaperone 1 protein-coding 2656 chr1 213934764 213934951 + 0 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 10108 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 2613 chr1 211675625 211675730 + 0 NA promoter-TSS (NM_001204182) promoter-TSS (NM_001204182) -47 NM_001204182 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 3056 chr1 238896110 238896192 + 0 NA Intergenic LTR21B|LTR|ERV1 -410134 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINKA long intergenic non-protein coding RNA 1139 ncRNA 13834 chr19 507075 507179 + 0 NA promoter-TSS (NM_033513) promoter-TSS (NM_033513) -370 NM_033513 91978 Hs.369613 NM_033513 ENSG00000141933 TPGS1 C19orf20|GTRGEO22|PGs1 tubulin polyglutamylase complex subunit 1 protein-coding 2693 chr1 216902879 216902909 + 0 NA intron (NM_001243507, intron 2 of 7) intron (NM_001243507, intron 2 of 7) 36779 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 10518 chr15 79311089 79311208 + 0 NA promoter-TSS (NM_001330376) promoter-TSS (NM_001330376) 86 NM_001330376 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p26 transmembrane p24 trafficking protein 3 protein-coding 8495 chr13 99046514 99046603 + 0 NA intron (NM_001130049, intron 1 of 32) intron (NM_001130049, intron 1 of 32) 39848 NM_001130049 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 4449 chr10 118373905 118374009 + 0 NA Intergenic Intergenic 16849 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 19763 chr3 100401424 100401512 + 0 NA promoter-TSS (NM_014820) promoter-TSS (NM_014820) -70 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 16067 chr2 105455109 105455166 + 0 NA Intergenic Intergenic -16364 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 7531 chr12 101460022 101460113 + 0 NA Intergenic LTR33|LTR|ERVL -15354 NM_152323 121599 Hs.577097 NM_152323 ENSG00000166211 SPIC SPI-C Spi-C transcription factor protein-coding 19401 chr3 41508194 41508281 + 0 NA intron (NR_136342, intron 30 of 34) L1PB1|LINE|L1 308786 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 13509 chr18 46321335 46321414 + 0 NA Intergenic L1MB4|LINE|L1 -12850 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 12896 chr17 68205413 68205520 + 0 NA promoter-TSS (NM_001346471) promoter-TSS (NM_001346471) -663 NM_001346472 51321 Hs.293560 NM_016627 ENSG00000196704 AMZ2 - archaelysin family metallopeptidase 2 protein-coding 11408 chr16 56730028 56730190 + 0 NA promoter-TSS (NM_014669) promoter-TSS (NM_014669) 4 NM_014669 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 23931 chr6 4607515 4607619 + 0 NA Intergenic Intergenic -2998 NR_122107 497048 Hs.591355 NM_001011540 KU-MEL-3 - uncharacterized LOC497048 ncRNA 23269 chr5 135651294 135651398 + 0 NA intron (NR_027127, intron 2 of 2) LTR41|LTR|ERVL 2589 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 LINC01959 - long intergenic non-protein coding RNA 1959 ncRNA 9435 chr14 77616835 77616941 + 0 NA promoter-TSS (NM_004863) promoter-TSS (NM_004863) -121 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 8365 chr13 75705022 75705179 + 0 NA intron (NM_001306080, intron 1 of 30) intron (NM_001306080, intron 1 of 30) -55321 NM_001330583 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 29024 chr9 32526247 32526259 + 0 NA promoter-TSS (NM_014314) promoter-TSS (NM_014314) 71 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 22671 chr5 68434247 68434404 + 0 NA Intergenic Intergenic 141757 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 1069 chr1 67561782 67561932 + 0 NA Intergenic Intergenic -123320 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 1224 chr1 85850358 85850476 + 0 NA intron (NM_152890, intron 37 of 59) intron (NM_152890, intron 37 of 59) -141984 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 12252 chr17 28234010 28234158 + 0 NA Intergenic HERVE-int|LTR|ERV1 7521 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 368 chr1 24047314 24047382 + 0 NA Intergenic Intergenic 64827 NM_152372 127294 Hs.523413 NM_152372 ENSG00000142661 MYOM3 - myomesin 3 protein-coding 17556 chr20 6909738 6909842 + 0 NA Intergenic L1MD1|LINE|L1 141692 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 3078 chr1 241625074 241625180 + 0 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 10803 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like, Rab escort protein 2 protein-coding 6293 chr11 125903155 125903259 + 0 NA promoter-TSS (NM_001271985) promoter-TSS (NM_001271985) 14 NM_031307 83480 Hs.660922 NM_031307 ENSG00000110060 PUS3 2610020J05Rik|FKSG32|MRT55 pseudouridylate synthase 3 protein-coding 4705 chr11 3057443 3057547 + 0 NA promoter-TSS (NM_001751) promoter-TSS (NM_001751) -44 NM_139273 833 Hs.274873 NM_001751 ENSG00000110619 CARS CARS1|CYSRS|MGC:11246 cysteinyl-tRNA synthetase protein-coding 611 chr1 35506074 35506223 + 0 NA intron (NM_024874, intron 3 of 20) intron (NM_024874, intron 3 of 20) 51288 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR KIAA0319 like protein-coding 849 chr1 48017863 48017967 + 0 NA Intergenic Intergenic -21025 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 29658 chr9 98056445 98056520 + 0 NA promoter-TSS (NM_018946) promoter-TSS (NM_018946) -195 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 4680 chr11 1262676 1262711 + 0 NA TTS (NM_002458) TTS (NM_002458) 6088 NR_106802 102466725 NR_106802 ENSG00000275669 MIR6744 hsa-mir-6744 microRNA 6744 ncRNA 19391 chr3 40453240 40453367 + 0 NA promoter-TSS (NR_040100) promoter-TSS (NR_040100) 5 NR_040100 285266 Hs.619663 NR_040100 ENSG00000223797 ENTPD3-AS1 - ENTPD3 antisense RNA 1 ncRNA 20077 chr3 126083619 126083723 + 0 NA intron (NM_001008485, intron 1 of 11) CpG 620 NM_017836 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 16754 chr2 180707937 180708041 + 0 NA intron (NR_104325, intron 1 of 5) intron (NR_104325, intron 1 of 5) 15885 NR_104320 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 14663 chr19 48819486 48819631 + 0 NA intron (NM_016246, intron 5 of 8) intron (NM_016246, intron 5 of 8) -8495 NM_001164773 587 Hs.512670 NM_001190 ENSG00000105552 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino acid transaminase 2 protein-coding 14153 chr19 12957168 12957313 + 0 NA promoter-TSS (NM_052850) promoter-TSS (NM_052850) 14 NM_052850 90480 Hs.515164 NM_052850 ENSG00000179271 GADD45GIP1 CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1 GADD45G interacting protein 1 protein-coding 30950 chrX 108091653 108091661 + 0 NA promoter-TSS (NM_001321290) promoter-TSS (NM_001321290) -10 NM_001321289 115201 Hs.8763 NM_052936 ENSG00000101844 ATG4A APG4A|AUTL2 autophagy related 4A cysteine peptidase protein-coding 13173 chr17 82495907 82496017 + 0 NA Intergenic Intergenic -23756 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 3225 chr10 5551950 5552023 + 0 NA Intergenic Intergenic -25740 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 15743 chr2 69567272 69567429 + 0 NA intron (NM_014911, intron 2 of 21) L2b|LINE|L2 -47179 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 13947 chr19 4375382 4375420 + 0 NA intron (NM_003025, intron 1 of 9) intron (NM_003025, intron 1 of 9) 25017 NM_001199944 6455 Hs.97616 NM_003025 ENSG00000141985 SH3GL1 CNSA1|EEN|SH3D2B|SH3P8 SH3 domain containing GRB2 like 1, endophilin A2 protein-coding 9212 chr14 64838837 64838924 + 0 NA Intergenic AluSq2|SINE|Alu -15732 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 26775 chr7 105806720 105806824 + 0 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 69813 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 28762 chr8 140511340 140511466 + 0 NA promoter-TSS (NR_040712) promoter-TSS (NR_040712) 105 NR_023360 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 15238 chr2 27582899 27583093 + 0 NA promoter-TSS (NM_001271287) promoter-TSS (NM_001271287) 27 NM_001271318 84450 Hs.529178 NM_032434 ENSG00000243943 ZNF512 - zinc finger protein 512 protein-coding 9706 chr14 102527669 102527773 + 0 NA Intergenic (GGGCA)n|Simple_repeat|Simple_repeat -11923 NR_036192 100422954 NR_036192 ENSG00000266015 MIR4309 - microRNA 4309 ncRNA 12881 chr17 66915271 66915375 + 0 NA Intergenic Intergenic 38050 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 8197 chr13 44313062 44313166 + 0 NA Intergenic MARNA|DNA|TcMar-Mariner -60536 NM_001346980 387923 Hs.377972 NM_001010897 ENSG00000151778 SERP2 C13orf21|bA269C23.1 stress associated endoplasmic reticulum protein family member 2 protein-coding 3071 chr1 241156695 241156799 + 0 NA intron (NM_002924, intron 2 of 17) LTR16A|LTR|ERVL 24475 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 3272 chr10 9239442 9239654 + 0 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -36065 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 28574 chr8 123768427 123768564 + 0 NA promoter-TSS (NM_001317918) promoter-TSS (NM_001317918) 56 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 22659 chr5 67015932 67015944 + 0 NA intron (NM_001290227, intron 2 of 25) intron (NM_001290227, intron 2 of 25) 11318 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 12144 chr17 16535691 16535795 + 0 NA Intergenic CpG 33469 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 14733 chr19 50975947 50976063 + 0 NA TTS (NM_139277) TTS (NM_139277) -6332 NM_001319948 5653 Hs.79361 NM_002774 ENSG00000167755 KLK6 Bssp|Klk7|PRSS18|PRSS9|SP59|hK6 kallikrein related peptidase 6 protein-coding 9773 chr14_GL000225v1_random 93662 93808 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 5054 chr11 27926989 27927093 + 0 NA Intergenic Arthur1|DNA|hAT-Tip100 -129774 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 29442 chr9 86405934 86406038 + 0 NA Intergenic Intergenic -51499 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 ZCCHC6 PAPD6|TUT7 zinc finger CCHC-type containing 6 protein-coding 13160 chr17 82267703 82267807 + 0 NA intron (NM_001893, intron 1 of 8) intron (NM_001893, intron 1 of 8) 5963 NM_139062 1453 Hs.631725 NM_001893 ENSG00000141551 CSNK1D ASPS|CKIdelta|FASPS2|HCKID casein kinase 1 delta protein-coding 28309 chr8 100746401 100746505 + 0 NA Intergenic L2b|LINE|L2 -24366 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 21956 chr4 158996695 158996799 + 0 NA intron (NM_152543, intron 1 of 4) MLT1L|LTR|ERVL-MaLR 38434 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 21015 chr3 194315613 194315676 + 0 NA Intergenic CpG -2840 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 14371 chr19 35612683 35612764 + 0 NA promoter-TSS (NM_015302) promoter-TSS (NM_015302) -21 NM_015302 23354 Hs.7426 NM_015302 ENSG00000249115 HAUS5 KIAA0841|dgt5 HAUS augmin like complex subunit 5 protein-coding 12212 chr17 20961782 20961851 + 0 NA intron (NR_123730, intron 5 of 5) L1ME3B|LINE|L1 23296 NR_123730 339260 Hs.661076 NR_123730 ENSG00000233098 LOC339260 - uncharacterized LOC339260 ncRNA 30879 chrX 100929505 100929549 + 0 NA promoter-TSS (NM_212559) promoter-TSS (NM_212559) -618 NM_212559 402415 Hs.364911 NM_212559 ENSG00000182489 XKRX XKR2|XPLAC|XRG2 XK related, X-linked protein-coding 6090 chr11 112175457 112175561 + 0 NA promoter-TSS (NM_001256398) promoter-TSS (NM_001256398) 24 NM_001256398 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 5784 chr11 86100048 86100200 + 0 NA Intergenic MIRc|SINE|MIR -30243 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 15266 chr2 28610709 28610860 + 0 NA intron (NR_138141, intron 21 of 35) L3|LINE|CR1 44427 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 9356 chr14 73745019 73745123 + 0 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -13676 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 30540 chrX 19343783 19343900 + 0 NA promoter-TSS (NM_000284) promoter-TSS (NM_000284) -52 NM_001173455 5160 Hs.530331 NM_000284 ENSG00000131828 PDHA1 PDHA|PDHAD|PDHCE1A|PHE1A pyruvate dehydrogenase (lipoamide) alpha 1 protein-coding 18171 chr20 49936369 49936465 + 0 NA promoter-TSS (NM_018683) promoter-TSS (NM_018683) 40 NM_018683 55905 Hs.144949 NM_018683 ENSG00000124226 RNF114 PSORS12|ZNF313 ring finger protein 114 protein-coding 67 chr1 5428538 5428642 + 0 NA Intergenic Intergenic -135481 NR_039612 100616489 NR_039612 ENSG00000264341 MIR4417 mir-4417 microRNA 4417 ncRNA 3335 chr10 15097320 15097397 + 0 NA promoter-TSS (NM_153244) promoter-TSS (NM_153244) -39 NM_153244 221060 Hs.567777 NM_153244 C10orf111 bA455B2.4 chromosome 10 open reading frame 111 protein-coding 3636 chr10 45008804 45008845 + 0 NA Intergenic Intergenic -7914 NM_001039380 220979 Hs.707791 NM_001039380 C10orf25 - chromosome 10 open reading frame 25 protein-coding 3133 chr1 246166569 246166722 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 250767 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 26843 chr7 113087759 113087863 + 0 NA promoter-TSS (NM_001146265) promoter-TSS (NM_001146265) -33 NM_001146265 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 327 chr1 21783560 21783724 + 0 NA promoter-TSS (NM_001032730) promoter-TSS (NM_001032730) -447 NM_001330394 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 18665 chr22 21045794 21045863 + 0 NA promoter-TSS (NM_001291006) promoter-TSS (NM_001291006) -132 NR_027006 400891 Hs.291198 NM_001013675 ENSG00000187905 LRRC74B - leucine rich repeat containing 74B protein-coding 14395 chr19 36489543 36489594 + 0 NA promoter-TSS (NM_032838) promoter-TSS (NM_032838) -7 NM_001145345 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 8964 chr14 49972923 49973027 + 0 NA Intergenic Intergenic 6576 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 1281 chr1 89994935 89995039 + 0 NA promoter-TSS (NM_182975) promoter-TSS (NM_182975) -21 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 14223 chr19 16660176 16660319 + 0 NA promoter-TSS (NM_001300925) promoter-TSS (NM_001300925) -90 NM_001300925 79086 Hs.356467 NM_024104 ENSG00000214046 SMIM7 C19orf42 small integral membrane protein 7 protein-coding 13112 chr17 80892165 80892342 + 0 NA intron (NM_020761, intron 18 of 33) intron (NM_020761, intron 18 of 33) -86621 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 12003 chr17 6436094 6436235 + 0 NA promoter-TSS (NM_001285399) promoter-TSS (NM_001285399) -965 NM_001033054 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 24472 chr6 36682839 36682874 + 0 NA intron (NM_001220778, intron 1 of 2) intron (NM_001220778, intron 1 of 2) 4146 NM_001220778 1026 Hs.370771 NM_000389 ENSG00000124762 CDKN1A CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1 cyclin dependent kinase inhibitor 1A protein-coding 3214 chr10 4826577 4826681 + 0 NA intron (NR_073127, intron 1 of 7) G-rich|Low_complexity|Low_complexity 452 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 6307 chr11 126416644 126416748 + 0 NA Intergenic CpG 10514 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 1881 chr1 158177940 158177949 + 0 NA Intergenic CpG -2003 NM_001319145 912 Hs.1799 NM_001766 ENSG00000158473 CD1D CD1A|R3|R3G1 CD1d molecule protein-coding 14920 chr2 3303702 3303806 + 0 NA intron (NM_001330530, intron 3 of 9) intron (NM_001330530, intron 3 of 9) 74178 NM_001330531 7260 Hs.502770 NM_003310 ENSG00000032389 TSSC1 EIPR1 tumor suppressing subtransferable candidate 1 protein-coding 11584 chr16 70779101 70779259 + 0 NA intron (NM_018052, intron 9 of 18) intron (NM_018052, intron 9 of 18) 21978 NM_018052 55697 Hs.445061 NM_018052 ENSG00000103043 VAC14 ArPIKfyve|SNDC|TAX1BP2|TRX Vac14, PIKFYVE complex component protein-coding 5833 chr11 91922156 91922260 + 0 NA Intergenic Intergenic -429888 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 14798 chr19 55166096 55166247 + 0 NA intron (NM_001256714, intron 2 of 11) CpG 551 NM_178837 352909 Hs.351582 NM_178837 ENSG00000167646 DNAAF3 C19orf51|CILD2|DAB1|PCD|PF22 dynein axonemal assembly factor 3 protein-coding 14552 chr19 45423801 45423905 + 0 NA promoter-TSS (NM_001166049) promoter-TSS (NM_001166049) 66 NM_001983 2067 Hs.435981 NM_001983 ENSG00000012061 ERCC1 COFS4|RAD10|UV20 ERCC excision repair 1, endonuclease non-catalytic subunit protein-coding 3197 chr10 3810215 3810314 + 0 NA Intergenic Intergenic -23686 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 23130 chr5 125394745 125394853 + 0 NA Intergenic L2|LINE|L2 -98462 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 17520 chr20 5120107 5120211 + 0 NA promoter-TSS (NM_182649) promoter-TSS (NM_182649) -158 NM_182649 5111 Hs.147433 NM_002592 ENSG00000132646 PCNA ATLD2 proliferating cell nuclear antigen protein-coding 14164 chr19 13774344 13774477 + 0 NA promoter-TSS (NM_014047) promoter-TSS (NM_014047) -33 NM_014047 28974 Hs.231616 NM_014047 ENSG00000104979 C19orf53 HSPC023|LYDG10 chromosome 19 open reading frame 53 protein-coding 10800 chr15 99704484 99704634 + 0 NA intron (NM_001130927, intron 7 of 9) intron (NM_001130927, intron 7 of 9) 28826 NM_001284418 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 3370 chr10 18660284 18660388 + 0 NA intron (NM_178815, intron 1 of 5) intron (NM_178815, intron 1 of 5) 952 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 16209 chr2 119240615 119240773 + 0 NA intron (NM_018234, intron 2 of 5) intron (NM_018234, intron 2 of 5) 8377 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 5422 chr11 64121083 64121241 + 0 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) 17272 NM_013280 23769 Hs.584876 NM_013280 ENSG00000126500 FLRT1 SPG68 fibronectin leucine rich transmembrane protein 1 protein-coding 5239 chr11 46930281 46930425 + 0 NA Intergenic Intergenic -6336 NM_001278222 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 19199 chr3 14651549 14651739 + 0 NA promoter-TSS (NM_016474) promoter-TSS (NM_016474) -102 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 29385 chr9 83544407 83544561 + 0 NA Intergenic L1PA15-16|LINE|L1 -6051 NM_174938 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 5782 chr11 86069166 86069299 + 0 NA promoter-TSS (NM_007166) promoter-TSS (NM_007166) -135 NM_001206946 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 29237 chr9 73176604 73176788 + 0 NA Intergenic MER41-int|LTR|ERV1 24965 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 21954 chr4 158873958 158874062 + 0 NA intron (NM_001346043, intron 13 of 15) intron (NM_001346043, intron 13 of 15) 67916 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 10452 chr15 74873032 74873181 + 0 NA intron (NM_001320778, intron 1 of 9) CpG 273 NM_005697 10066 Hs.458917 NM_005697 ENSG00000140497 SCAMP2 - secretory carrier membrane protein 2 protein-coding 25397 chr6 157022134 157022170 + 0 NA intron (NM_020732, intron 5 of 19) CpG -242421 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 21498 chr4 80731519 80731623 + 0 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -299394 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 15057 chr2 14516969 14517051 + 0 NA Intergenic Intergenic -115673 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 6809 chr12 28770569 28770673 + 0 NA Intergenic Intergenic -378382 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 4468 chr10 119104064 119104168 + 0 NA promoter-TSS (NR_130122) promoter-TSS (NR_130122) 51 NR_130122 404636 Hs.434241 NM_207009 ENSG00000119979 FAM45A - family with sequence similarity 45 member A protein-coding 21080 chr3 197554837 197554989 + 0 NA intron (NM_203314, intron 1 of 7).2 CpG 1074 NM_004051 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 20932 chr3 190077168 190077272 + 0 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) -43744 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 26042 chr7 35425041 35425145 + 0 NA Intergenic Intergenic 111238 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 12955 chr17 72684082 72684222 + 0 NA intron (NM_139177, intron 7 of 9) intron (NM_139177, intron 7 of 9) -43680 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 12219 chr17 21284518 21284646 + 0 NA promoter-TSS (NM_145109) promoter-TSS (NM_145109) -74 NM_001316332 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 1633 chr1 145859824 145859900 + 0 NA promoter-TSS (NM_006099) promoter-TSS (NM_006099) -781 NM_006099 10401 Hs.435761 NM_006099 ENSG00000131788 PIAS3 ZMIZ5 protein inhibitor of activated STAT 3 protein-coding 25732 chr7 16269055 16269159 + 0 NA non-coding (NR_038946, exon 5 of 5) non-coding (NR_038946, exon 5 of 5) 58621 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 ISPD-AS1 - ISPD antisense RNA 1 ncRNA 19460 chr3 47781950 47782076 + 0 NA promoter-TSS (NM_003074) promoter-TSS (NM_003074) -98 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 23829 chr5 179821816 179821920 + 0 NA intron (NM_003900, intron 1 of 7) intron (NM_003900, intron 1 of 7) 1026 NM_003900 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 1942 chr1 161749645 161749828 + 0 NA promoter-TSS (NM_007240) promoter-TSS (NM_007240) -32 NM_007240 11266 Hs.416216 NM_007240 ENSG00000081721 DUSP12 DUSP1|YVH1 dual specificity phosphatase 12 protein-coding 9701 chr14 102305159 102305282 + 0 NA promoter-TSS (NM_001272011) promoter-TSS (NM_001272011) -20 NM_001330234 5891 Hs.104119 NM_014226 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 4217 chr10 100347023 100347156 + 0 NA promoter-TSS (NM_005063) promoter-TSS (NM_005063) 74 NM_005063 6319 Hs.558396 NM_005063 ENSG00000099194 SCD FADS5|MSTP008|SCD1|SCDOS|hSCD1 stearoyl-CoA desaturase protein-coding 1484 chr1 109984632 109984791 + 0 NA promoter-TSS (NM_006621) promoter-TSS (NM_006621) -54 NM_006621 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 20116 chr3 129121727 129121831 + 0 NA promoter-TSS (NM_001204886) promoter-TSS (NM_001204886) 25 NM_198490 339122 Hs.381132 NM_198490 ENSG00000172780 RAB43 RAB11B|RAB41 RAB43, member RAS oncogene family protein-coding 14039 chr19 8525786 8525888 + 0 NA intron (NM_012335, intron 24 of 27) intron (NM_012335, intron 24 of 27) -11673 NM_001146175 84330 Hs.515114 NM_032370 ENSG00000133250 ZNF414 ZFP414 zinc finger protein 414 protein-coding 2042 chr1 168880107 168880172 + 0 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 93198 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 15557 chr2 54545867 54545975 + 0 NA intron (NM_003128, intron 2 of 35) intron (NM_003128, intron 2 of 35) -12473 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 3748 chr10 61752149 61752300 + 0 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 89263 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 C10orf107 bA63A2.1 chromosome 10 open reading frame 107 protein-coding 28831 chr8 144126582 144126686 + 0 NA Intergenic Intergenic -11135 NM_016458 51236 Hs.300224 NM_016458 ENSG00000235173 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog protein-coding 5815 chr11 88174750 88174827 + 0 NA intron (NM_022337, intron 1 of 2) intron (NM_022337, intron 1 of 2) 679 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 30919 chrX 105695561 105695665 + 0 NA intron (NM_017416, intron 6 of 10) intron (NM_017416, intron 6 of 10) -126930 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 1923 chr1 161074776 161074880 + 0 NA intron (NM_030916, intron 4 of 8) intron (NM_030916, intron 4 of 8) -4858 NM_001287602 257106 Hs.389374 NM_181720 ENSG00000186517 ARHGAP30 - Rho GTPase activating protein 30 protein-coding 22459 chr5 43018048 43018167 + 0 NA non-coding (NR_034086, exon 1 of 2) non-coding (NR_034086, exon 1 of 2) 704 NR_034086 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 14889 chr2 36027 36173 + 0 NA Intergenic Intergenic 10488 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 9073 chr14 55851034 55851138 + 0 NA Intergenic Intergenic -54412 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 6095 chr11 112334444 112334548 + 0 NA intron (NR_126004, intron 2 of 3) intron (NR_126004, intron 2 of 3) 63747 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LOC283140 - uncharacterized LOC283140 ncRNA 25494 chr6 169425148 169425252 + 0 NA Intergenic Intergenic -171086 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 3461 chr10 25113800 25113904 + 0 NA intron (NR_120649, intron 1 of 7) intron (NR_120649, intron 1 of 7) 794 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 28415 chr8 108723010 108723114 + 0 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 64553 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 25836 chr7 22564851 22564955 + 0 NA intron (NR_038393, intron 1 of 3) intron (NR_038393, intron 1 of 3) 1566 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 27073 chr7 137667786 137667890 + 0 NA intron (NM_001321710, intron 3 of 32) intron (NM_001321710, intron 3 of 32) 178494 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 27875 chr8 56270776 56270949 + 0 NA Intergenic Intergenic 49914 NM_001318049 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 29247 chr9 73781051 73781155 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR -590428 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 25123 chr6 126339977 126340138 + 0 NA non-coding (NR_104462, exon 1 of 4) non-coding (NR_104462, exon 1 of 4) 268 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 13410 chr18 32372536 32372690 + 0 NA intron (NM_022751, intron 2 of 5) intron (NM_022751, intron 2 of 5) 97871 NM_022751 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 16737 chr2 178451192 178451335 + 0 NA promoter-TSS (NM_001139518) promoter-TSS (NM_001139518) -23 NM_001316362 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 1008 chr1 63674517 63674621 + 0 NA Intergenic Intergenic 51353 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 28268 chr8 98037200 98037350 + 0 NA TTS (NM_030583) TTS (NM_030583) 4942 NR_002581 26775 Hs.684855 NR_002581 ENSG00000207067 SNORA72 RNU72|U72 small nucleolar RNA, H/ACA box 72 snoRNA 13126 chr17 81346152 81346250 + 0 NA Intergenic CpG -15527 NM_178520 284186 Hs.364191 NM_178520 ENSG00000185332 TMEM105 - transmembrane protein 105 protein-coding 11314 chr16 48971903 48972007 + 0 NA Intergenic Intergenic 309876 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 29681 chr9 98848730 98848793 + 0 NA intron (NM_024642, intron 9 of 9) intron (NM_024642, intron 9 of 9) 41062 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 25927 chr7 27372587 27372657 + 0 NA Intergenic Intergenic -125393 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 1401 chr1 99970436 99970501 + 0 NA promoter-TSS (NM_001271685) promoter-TSS (NM_001271685) 32 NM_001271685 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 26936 chr7 123757309 123757394 + 0 NA Intergenic Intergenic -8280 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB Wiskott-Aldrich syndrome like protein-coding 9224 chr14 65180560 65180664 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 41735 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 18711 chr22 25120184 25120269 + 0 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -7534 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 5163 chr11 35894212 35894291 + 0 NA Intergenic Intergenic -49730 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 4289 chr10 103881801 103881882 + 0 NA 3' UTR (NM_024928, exon 10 of 10) 3' UTR (NM_024928, exon 10 of 10) -26435 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 902 chr1 54408455 54408478 + 0 NA Intergenic Intergenic -2071 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 827 chr1 46604220 46604324 + 0 NA promoter-TSS (NR_024176) promoter-TSS (NR_024176) 22 NM_198973 8569 Hs.371594 NM_003684 ENSG00000079277 MKNK1 MNK1 MAP kinase interacting serine/threonine kinase 1 protein-coding 13280 chr18 12407720 12407824 + 0 NA promoter-TSS (NM_001142405) promoter-TSS (NM_001142405) -124 NM_001142405 10650 Hs.514718 NM_006553 ENSG00000141391 PRELID3A C18orf43|HFL-EDDG1|SLMO1 PRELI domain containing 3A protein-coding 266 chr1 17588308 17588412 + 0 NA intron (NM_001319837, intron 2 of 25) intron (NM_001319837, intron 2 of 25) 7807 NM_001011722 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 12316 chr17 31549974 31549985 + 0 NA Intergenic CpG -10017 NR_029710 406968 NR_029710 ENSG00000207614 MIR193A MIRN193|MIRN193A|mir-193a microRNA 193a ncRNA 1624 chr1 143264607 143264758 + 0 NA Intergenic (ATCAAATGGA)n|Simple_repeat|Simple_repeat 157910 NR_027354 645166 Hs.744183 NR_027354 LOC645166 - lymphocyte-specific protein 1 pseudogene pseudo 7297 chr12 77120305 77120409 + 0 NA Intergenic MIRb|SINE|MIR -54777 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 25119 chr6 125986400 125986561 + 0 NA promoter-TSS (NM_001031712) promoter-TSS (NM_001031712) 50 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 24158 chr6 19837329 19837458 + 0 NA promoter-TSS (NM_001546) promoter-TSS (NM_001546) 23 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 16709 chr2 177170339 177170489 + 0 NA Intergenic Intergenic -42280 NM_001330247 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 23967 chr6 7468656 7468764 + 0 NA Intergenic Intergenic 66063 NM_153005 83732 Hs.437474 NM_031480 ENSG00000124784 RIOK1 AD034|RRP10|bA288G3.1 RIO kinase 1 protein-coding 6950 chr12 48198204 48198304 + 0 NA Intergenic CpG 5038 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 27137 chr7 142159234 142159338 + 0 NA intron (NM_001293626, intron 19 of 47) intron (NM_001293626, intron 19 of 47) 47537 NM_001293626 93432 Hs.647098 NM_001008748 ENSG00000257743 MGAM2 - maltase-glucoamylase 2 (putative) protein-coding 12435 chr17 39699887 39700024 + 0 NA promoter-TSS (NM_001289937) promoter-TSS (NM_001289937) -23 NM_001289937 2064 Hs.446352 NM_004448 ENSG00000141736 ERBB2 CD340|HER-2|HER-2/neu|HER2|MLN 19|NEU|NGL|TKR1 erb-b2 receptor tyrosine kinase 2 protein-coding 29212 chr9 72442366 72442470 + 0 NA Intergenic Intergenic -77171 NM_006007 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 19946 chr3 116000405 116000509 + 0 NA intron (NM_002338, intron 3 of 6) intron (NM_002338, intron 3 of 6) -359567 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 2378 chr1 201538869 201538970 + 0 NA Intergenic CpG 19015 NR_026667 376693 Hs.605989 NR_026667 RPS10P7 RPS10_2_147 ribosomal protein S10 pseudogene 7 pseudo 2983 chr1 234373332 234373468 + 0 NA promoter-TSS (NM_001206641) promoter-TSS (NM_001206641) 3 NR_125962 101927765 Hs.596703 NR_125961 ENSG00000231663 LOC101927765 - uncharacterized LOC101927765 ncRNA 30768 chrX 57121527 57121631 + 0 NA promoter-TSS (NM_001282462) promoter-TSS (NM_001282462) -23 NM_001282461 474343 Hs.460717 NM_001006681 ENSG00000186787 SPIN2B SPIN-2|SPIN-2B|SPIN2_duplicate|TDRD26|dJ323P24.2 spindlin family member 2B protein-coding 24351 chr6 30914109 30914261 + 0 NA promoter-TSS (NM_001167733) promoter-TSS (NM_001167733) -23 NM_020442 57176 Hs.597526 NM_020442 ENSG00000137411 VARS2 COXPD20|VALRS|VARS2L|VARSL valyl-tRNA synthetase 2, mitochondrial protein-coding 6665 chr12 14514285 14514389 + 0 NA intron (NM_024829, intron 6 of 10) intron (NM_024829, intron 6 of 10) -53395 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 28354 chr8 102789049 102789185 + 0 NA Intergenic Intergenic 75083 NM_001301668 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 27697 chr8 38041586 38041680 + 0 NA intron (NM_004095, intron 1 of 2) intron (NM_004095, intron 1 of 2) 11131 NM_004095 1978 Hs.411641 NM_004095 ENSG00000187840 EIF4EBP1 4E-BP1|4EBP1|BP-1|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 protein-coding 9953 chr15 41231053 41231204 + 0 NA promoter-TSS (NM_001286441) promoter-TSS (NM_001286441) -111 NM_007236 11261 Hs.406234 NM_007236 ENSG00000187446 CHP1 CHP|SLC9A1BP|Sid470p|p22|p24 calcineurin like EF-hand protein 1 protein-coding 30532 chrX 17377508 17377612 + 0 NA intron (NM_001291867, intron 1 of 8) CpG 2140 NM_001291867 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 22140 chr5 612241 612390 + 0 NA promoter-TSS (NR_103444).2 promoter-TSS (NR_103444).2 25 NM_018140 55722 Hs.591741 NM_018140 ENSG00000112877 CEP72 - centrosomal protein 72 protein-coding 19652 chr3 69762623 69762727 + 0 NA promoter-TSS (NM_001184967) promoter-TSS (NM_001184967) -881 NM_001184967 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|MI|WS2|WS2A|bHLHe32 melanogenesis associated transcription factor protein-coding 16660 chr2 172253384 172253522 + 0 NA Intergenic Intergenic 150447 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 5711 chr11 78365422 78365526 + 0 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) -23594 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 910 chr1 54764581 54764716 + 0 NA promoter-TSS (NM_152268) promoter-TSS (NM_152268) -95 NM_152268 25973 Hs.380169 NM_152268 ENSG00000162396 PARS2 MT-PRORS|proRS prolyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 3463 chr10 25493183 25493287 + 0 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -158477 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 17590 chr20 10619611 10619759 + 0 NA intron (NM_001009608, intron 6 of 7) intron (NM_001009608, intron 6 of 7) 30010 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 7863 chr12 125065571 125065617 + 0 NA exon (NM_001319839, exon 1 of 17) exon (NM_001319839, exon 1 of 17) 227 NM_001319839 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 693 chr1 39990530 39990554 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR 35430 NM_032793 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 21533 chr4 83974311 83974415 + 0 NA intron (NR_125909, intron 8 of 8) MIRb|SINE|MIR 324806 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 8690 chr14 21511360 21511495 + 0 NA promoter-TSS (NM_019852) promoter-TSS (NM_019852) -52 NM_019852 56339 Hs.168799 NM_019852 ENSG00000165819 METTL3 IME4|M6A|MT-A70|Spo8|hMETTL3 methyltransferase like 3 protein-coding 14043 chr19 9010469 9010582 + 0 NA Intergenic Intergenic -29183 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 24664 chr6 48567138 48567289 + 0 NA Intergenic Intergenic -498524 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 28988 chr9 22085342 22085446 + 0 NA intron (NR_003529, intron 12 of 18) intron (NR_003529, intron 12 of 18) -76081 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 19633 chr3 66220855 66220951 + 0 NA non-coding (NR_028475, exon 1 of 10) non-coding (NR_028475, exon 1 of 10) 161 NM_001164796 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 10261 chr15 63600731 63600881 + 0 NA promoter-TSS (NR_034080) promoter-TSS (NR_034080) 21 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 23041 chr5 113489396 113489557 + 0 NA promoter-TSS (NM_001085377) promoter-TSS (NM_001085377) -646 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 mutated in colorectal cancers protein-coding 18834 chr22 35589377 35589481 + 0 NA Intergenic Intergenic 27908 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 14219 chr19 16496217 16496218 + 0 NA promoter-TSS (NM_145046) promoter-TSS (NM_145046) -25 NM_145046 125972 Hs.304020 NM_145046 ENSG00000269058 CALR3 CMH19|CRT2|CT93 calreticulin 3 protein-coding 27943 chr8 63300681 63300744 + 0 NA Intergenic LTR41|LTR|ERVL 131709 NM_001277818 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 7341 chr12 84508398 84508442 + 0 NA Intergenic MER50-int|LTR|ERV1 404409 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 23689 chr5 169583693 169583803 + 0 NA promoter-TSS (NM_001329640) promoter-TSS (NM_001329640) 114 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 8235 chr13 47112269 47112373 + 0 NA Intergenic Intergenic -215245 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 12640 chr17 49414998 49415052 + 0 NA promoter-TSS (NM_001281497) promoter-TSS (NM_001281497) -120 NM_002634 5245 Hs.514303 NM_002634 ENSG00000167085 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 4414 chr10 114882951 114883055 + 0 NA intron (NM_001135051, intron 16 of 16) intron (NM_001135051, intron 16 of 16) -55190 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 20180 chr3 133578704 133578808 + 0 NA intron (NM_001282765, intron 2 of 4) intron (NM_001282765, intron 2 of 4) 4322 NM_001282765 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 5065 chr11 28702245 28702338 + 0 NA Intergenic Intergenic -224743 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 28979 chr9 21559716 21559873 + 0 NA promoter-TSS (NR_027054) promoter-TSS (NR_027054) -96 NR_027054 554202 Hs.458096 NR_027054 MIR31HG hsa-lnc-31 MIR31 host gene ncRNA 20554 chr3 160677697 160677871 + 0 NA exon (NM_025047, exon 1 of 1) exon (NM_025047, exon 1 of 1) 624 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 6885 chr12 42024307 42024442 + 0 NA Intergenic Intergenic 120497 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 28631 chr8 127225149 127225221 + 0 NA Intergenic Intergenic -5917 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 (non-protein coding) ncRNA 15374 chr2 38096313 38096458 + 0 NA Intergenic Intergenic -20204 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 27750 chr8 42391613 42391743 + 0 NA promoter-TSS (NM_005662) promoter-TSS (NM_005662) -83 NM_005662 7419 Hs.699301 NM_005662 ENSG00000078668 VDAC3 HD-VDAC3|VDAC-3 voltage dependent anion channel 3 protein-coding 24183 chr6 22828312 22828419 + 0 NA Intergenic Intergenic -110441 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 29756 chr9 106482854 106482998 + 0 NA Intergenic Intergenic -118002 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 9505 chr14 88248778 88248882 + 0 NA intron (NM_021161, intron 2 of 6) intron (NM_021161, intron 2 of 6) 22081 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 25728 chr7 15571600 15571754 + 0 NA Intergenic L5|LINE|RTE-X -9662 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 12580 chr17 45183819 45183923 + 0 NA Intergenic Intergenic -12386 NR_135646 105371795 Hs.569733 NR_135646 ENSG00000267288 LOC105371795 - uncharacterized LOC105371795 ncRNA 25206 chr6 137867155 137867312 + 0 NA promoter-TSS (NM_001270508) promoter-TSS (NM_001270508) 45 NM_001270507 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 10276 chr15 64514433 64514559 + 0 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 15076 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 1714 chr1 151539720 151539874 + 0 NA promoter-TSS (NM_001126337) promoter-TSS (NM_001126337) -508 NM_001126337 7286 Hs.489922 NM_020127 ENSG00000143367 TUFT1 - tuftelin 1 protein-coding 29084 chr9 35829148 35829252 + 0 NA promoter-TSS (NM_001012446) promoter-TSS (NM_001012446) -25 NM_016446 51754 Hs.493808 NM_016446 ENSG00000137103 TMEM8B C9orf127|NAG-5|NAG5|NGX6 transmembrane protein 8B protein-coding 28303 chr8 100499475 100499575 + 0 NA Intergenic Intergenic 60186 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 22126 chr4 188127596 188127700 + 0 NA Intergenic Intergenic -11793 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 26677 chr7 99274343 99274433 + 0 NA intron (NR_002147, intron 1 of 15) intron (NR_002147, intron 1 of 15) 1087 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 12833 chr17 63622060 63622219 + 0 NA promoter-TSS (NM_002401) promoter-TSS (NM_002401) -286 NM_001330431 4215 Hs.29282 NM_002401 ENSG00000198909 MAP3K3 MAPKKK3|MEKK3 mitogen-activated protein kinase kinase kinase 3 protein-coding 25610 chr7 5646944 5647081 + 0 NA intron (NM_207111, intron 14 of 16) L1MB5|LINE|L1 33449 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 20988 chr3 193114892 193114920 + 0 NA Intergenic LTR49|LTR|ERV1 -126222 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 HRASLS A-C1|H-REV107|HRASLS1|HRSL1|HSD28 HRAS like suppressor protein-coding 25972 chr7 30478670 30478795 + 0 NA promoter-TSS (NM_006092) promoter-TSS (NM_006092) 45 NM_006092 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 13072 chr17 78314280 78314384 + 0 NA Intergenic CpG -35840 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 11376 chr16 54847311 54847468 + 0 NA non-coding (NR_134971, exon 2 of 2) non-coding (NR_134971, exon 2 of 2) 844 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 27444 chr8 17801349 17801459 + 0 NA promoter-TSS (NM_001001924) promoter-TSS (NM_001001924) -487 NM_001001924 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 24190 chr6 24402791 24402943 + 0 NA promoter-TSS (NR_104423) promoter-TSS (NR_104423) -41 NM_001286266 57380 Hs.658612 NM_020662 ENSG00000124532 MRS2 HPT|MRS2L MRS2, magnesium transporter protein-coding 9146 chr14 61355994 61356154 + 0 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 34631 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 15185 chr2 25042034 25042156 + 0 NA promoter-TSS (NM_001319099) promoter-TSS (NM_001319099) -9 NM_014971 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 4236 chr10 101558315 101558419 + 0 NA Intergenic Intergenic 29903 NM_001308382 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 25787 chr7 19522643 19522747 + 0 NA Intergenic Intergenic 182741 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 30582 chrX 24647308 24647412 + 0 NA promoter-TSS (NM_001163265) promoter-TSS (NM_001163265) -22 NM_001163265 9468 Hs.660708 NM_004845 ENSG00000102230 PCYT1B CCTB|CTB phosphate cytidylyltransferase 1, choline, beta protein-coding 14986 chr2 10072786 10072848 + 0 NA intron (NM_001037160, intron 1 of 2) intron (NM_001037160, intron 1 of 2) 7594 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 26961 chr7 126701237 126701341 + 0 NA intron (NM_000845, intron 6 of 9) intron (NM_000845, intron 6 of 9) 356895 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 27080 chr7 138002085 138002231 + 0 NA promoter-TSS (NM_001253775) promoter-TSS (NM_001253775) -57 NM_001253775 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 27472 chr8 19061378 19061520 + 0 NA Intergenic Intergenic -47763 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 30853 chrX 78456054 78456158 + 0 NA Intergenic LTR8B|LTR|ERV1 -128415 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 6789 chr12 27780294 27780398 + 0 NA promoter-TSS (NM_020782) promoter-TSS (NM_020782) 92 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 2579 chr1 209825966 209826070 + 0 NA Intergenic Intergenic -1949 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 DIEXF C1orf107|DEF|DJ434O14.5|UTP25 digestive organ expansion factor homolog (zebrafish) protein-coding 28014 chr8 72882168 72882272 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -126642 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 28646 chr8 127800886 127800990 + 0 NA intron (NR_003367, intron 1 of 8) L2a|LINE|L2 4976 NR_031609 100302185 NR_031609 ENSG00000249859 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 26231 chr7 47979502 47979594 + 0 NA promoter-TSS (NM_004507) promoter-TSS (NM_004507) 77 NM_004507 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 20049 chr3 123834843 123834942 + 0 NA intron (NM_053026, intron 2 of 32) intron (NM_053026, intron 2 of 32) 49410 NM_053026 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 16743 chr2 179268499 179268603 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -3928 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 3182 chr10 2214153 2214257 + 0 NA Intergenic Intergenic 100869 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 955 chr1 59020335 59020443 + 0 NA promoter-TSS (NR_110626) promoter-TSS (NR_110626) -87 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 18999 chr22 45163752 45163792 + 0 NA promoter-TSS (NM_007172) promoter-TSS (NM_007172) 9 NR_038956 100506714 Hs.189902 NR_038956 NUP50-AS1 - NUP50 antisense RNA 1 (head to head) ncRNA 17639 chr20 13247642 13247746 + 0 NA intron (NM_080826, intron 1 of 5) intron (NM_080826, intron 1 of 5) -8007 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 1888 chr1 159055307 159055411 + 0 NA TTS (NM_005531) TTS (NM_005531) 21498 NM_004833 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 16389 chr2 138422014 138422127 + 0 NA Intergenic Intergenic -79710 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 14167 chr19 13851223 13851327 + 0 NA Intergenic Intergenic -14616 NR_029495 407010 NR_029495 ENSG00000207980 MIR23A MIRN23A|hsa-mir-23a|miRNA23A|mir-23a microRNA 23a ncRNA 28257 chr8 97643955 97644059 + 0 NA promoter-TSS (NM_178812) promoter-TSS (NM_178812) -172 NM_178812 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 26442 chr7 76048012 76048098 + 0 NA promoter-TSS (NM_001282404) promoter-TSS (NM_001282404) 36 NM_005918 4191 Hs.520967 NM_005918 ENSG00000146701 MDH2 M-MDH|MDH|MGC:3559|MOR1 malate dehydrogenase 2 protein-coding 12761 chr17 57903316 57903447 + 0 NA promoter-TSS (NM_001292025) promoter-TSS (NM_001292025) 8 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 7692 chr12 115873027 115873154 + 0 NA Intergenic Intergenic 275564 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 3267 chr10 8053494 8053598 + 0 NA promoter-TSS (NR_024256) promoter-TSS (NR_024256) -62 NR_024256 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 22411 chr5 39219534 39219652 + 0 NA promoter-TSS (NM_001465) promoter-TSS (NM_001465) -15 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 16221 chr2 120134471 120134575 + 0 NA intron (NM_001330310, intron 18 of 24) L1MA3|LINE|L1 88885 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 2647 chr1 212858107 212858265 + 0 NA promoter-TSS (NR_027285) promoter-TSS (NR_027285) -48 NR_027285 642946 Hs.552649 NR_027285 ENSG00000198468 FLVCR1-AS1 LQK1|NCRNA00292 FLVCR1 antisense RNA 1 (head to head) ncRNA 190 chr1 12810996 12811090 + 0 NA Intergenic Intergenic 16352 NM_001294139 65121 Hs.454859 NM_023013 ENSG00000116721 PRAMEF1 - PRAME family member 1 protein-coding 18809 chr22 31662251 31662400 + 0 NA 5' UTR (NM_001326411, exon 1 of 8) 5' UTR (NM_001326411, exon 1 of 8) 239 NM_001326413 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 17866 chr20 32475436 32475513 + 0 NA intron (NM_001256798, intron 4 of 10) intron (NM_001256798, intron 4 of 10) 8108 NM_080616 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4 nucleolar protein 4 like protein-coding 822 chr1 46402122 46402185 + 0 NA exon (NM_001441, exon 2 of 15) exon (NM_001441, exon 2 of 15) 7886 NM_001441 2166 Hs.720143 NM_001441 ENSG00000117480 FAAH FAAH-1|PSAB fatty acid amide hydrolase protein-coding 23681 chr5 168401967 168402111 + 0 NA intron (NM_015238, intron 5 of 22) intron (NM_015238, intron 5 of 22) -84419 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 21715 chr4 113547557 113547716 + 0 NA intron (NM_001321578, intron 5 of 17) intron (NM_001321578, intron 5 of 17) 214291 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 15659 chr2 64362700 64362884 + 0 NA Intergenic Intergenic -21944 NR_106995 102465833 NR_106995 ENSG00000264297 MIR4433B hsa-mir-4433b microRNA 4433b ncRNA 22692 chr5 69528199 69528303 + 0 NA intron (NM_001205255, intron 2 of 6) intron (NM_001205255, intron 2 of 6) 24074 NM_001205255 100506658 Hs.592605 NM_002538 ENSG00000197822 OCLN BLCPMG|PPP1R115 occludin protein-coding 30123 chr9 126753389 126753539 + 0 NA Intergenic Intergenic -51542 NM_014007 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 24622 chr6 45607882 45608036 + 0 NA Intergenic Intergenic 185382 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 26826 chr7 111953715 111953819 + 0 NA intron (NM_014705, intron 8 of 51) MER34B|LTR|ERV1 145262 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 18704 chr22 24727203 24727307 + 0 NA intron (NR_045649, intron 17 of 21) MLT1E2|LTR|ERVL-MaLR -37246 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - topoisomerase (DNA) I pseudogene 2 pseudo 26117 chr7 41189995 41190099 + 0 NA Intergenic MER45B|DNA|hAT-Tip100 88443 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 27535 chr8 23353063 23353167 + 0 NA intron (NM_002318, intron 3 of 13) intron (NM_002318, intron 3 of 13) 16907 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 12503 chr17 41800822 41800974 + 0 NA Intergenic Intergenic 11301 NM_006455 10609 Hs.446459 NM_006455 ENSG00000141696 P3H4 LEPREL4|NO55|NOL55|SC65 prolyl 3-hydroxylase family member 4 (non-enzymatic) protein-coding 12427 chr17 38880052 38880182 + 0 NA intron (NM_001271608, intron 2 of 5) intron (NM_001271608, intron 2 of 5) 10258 NM_006148 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 8249 chr13 48532991 48533022 + 0 NA intron (NM_001268, intron 1 of 14) CpG 250 NM_001268 1102 Hs.652712 NM_001268 ENSG00000136161 RCBTB2 CHC1L|RLG RCC1 and BTB domain containing protein 2 protein-coding 16681 chr2 174177025 174177114 + 0 NA intron (NM_013341, intron 4 of 10) intron (NM_013341, intron 4 of 10) 71601 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 9194 chr14 64060649 64060797 + 0 NA intron (NM_182914, intron 49 of 115) L1M1|LINE|L1 34402 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 3387 chr10 21399756 21399954 + 0 NA Intergenic Intergenic 96786 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 7617 chr12 108731594 108731741 + 0 NA promoter-TSS (NM_001276471) promoter-TSS (NM_001276471) -117 NM_014325 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 18734 chr22 27202887 27202991 + 0 NA Intergenic Intergenic 15423 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 10610 chr15 85358076 85358221 + 0 NA Intergenic Intergenic -22448 NR_106993 102465803 NR_106993 ENSG00000170776 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 28523 chr8 119982849 119983000 + 0 NA intron (NM_001283012, intron 2 of 6) MLT1J|LTR|ERVL-MaLR 109269 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 27926 chr8 61563323 61563427 + 0 NA intron (NM_004318, intron 17 of 24) intron (NM_004318, intron 17 of 24) 126474 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 1966 chr1 164558826 164558956 + 0 NA promoter-TSS (NM_002585) promoter-TSS (NM_002585) -469 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 1665 chr1 149886747 149886876 + 0 NA promoter-TSS (NM_003528) promoter-TSS (NM_003528) -129 NM_003528 8349 Hs.2178 NM_003528 ENSG00000184678 HIST2H2BE GL105|H2B|H2B.1|H2BFQ|H2BGL105|H2BQ histone cluster 2 H2B family member e protein-coding 16738 chr2 178480282 178480415 + 0 NA promoter-TSS (NM_019091) promoter-TSS (NM_019091) -124 NM_019091 65977 Hs.41086 NM_019091 ENSG00000116095 PLEKHA3 FAPP1 pleckstrin homology domain containing A3 protein-coding 21716 chr4 113646008 113646112 + 0 NA intron (NM_172129, intron 3 of 17) intron (NM_172129, intron 3 of 17) 115867 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 20943 chr3 190368960 190369064 + 0 NA Intergenic Intergenic -18860 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 26769 chr7 105013066 105013117 + 0 NA non-coding (NR_024586, exon 1 of 1) non-coding (NR_024586, exon 1 of 1) 1050 NR_024586 100216545 Hs.631150 NR_024586 KMT2E-AS1 - KMT2E antisense RNA 1 (head to head) ncRNA 29585 chr9 94278968 94279044 + 0 NA intron (NM_194320, intron 2 of 4) intron (NM_194320, intron 2 of 4) 19740 NM_001301275 169841 Hs.387623 NM_003448 ENSG00000175787 ZNF169 - zinc finger protein 169 protein-coding 5446 chr11 64878520 64878659 + 0 NA 5' UTR (NM_006795, exon 1 of 5) 5' UTR (NM_006795, exon 1 of 5) 179 NM_006795 10938 Hs.523774 NM_006795 ENSG00000110047 EHD1 H-PAST|HPAST1|PAST|PAST1 EH domain containing 1 protein-coding 11718 chr16 81405972 81406076 + 0 NA Intergenic Intergenic 21006 NR_039871 100616150 NR_039871 ENSG00000261609 MIR4720 - microRNA 4720 ncRNA 3873 chr10 72332120 72332182 + 0 NA TTS (NM_001002762) TTS (NM_001002762) 22998 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 18222 chr20 51767158 51767336 + 0 NA intron (NM_006045, intron 1 of 27) CpG 1164 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 11053 chr16 15154743 15154892 + 0 NA TTS (NR_036141).5 TTS (NR_036141).5 185 NR_037466 100500852 NR_037466 ENSG00000264115 MIR3180-4 mir-3180-4 microRNA 3180-4 ncRNA 2252 chr1 187491569 187491613 + 0 NA Intergenic MamRep605|LTR?|LTR? 47963 NR_132374 106144535 Hs.568709 NR_132374 ENSG00000231599 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 21862 chr4 145180557 145180738 + 0 NA promoter-TSS (NM_001102653) promoter-TSS (NM_001102653) -967 NM_001102653 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 5751 chr11 83055150 83055296 + 0 NA intron (NM_014488, intron 1 of 5) MIRb|SINE|MIR -13625 NR_033347 100379250 Hs.725115 NR_033347 ENSG00000207221 SNORA70E U70E small nucleolar RNA, H/ACA box 70E snoRNA 9618 chr14 96083872 96083976 + 0 NA intron (NM_001282463, intron 2 of 2) intron (NM_001282463, intron 2 of 2) 44600 NM_001282464 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 8720 chr14 23062183 23062287 + 0 NA exon (NM_014977, exon 16 of 19) exon (NM_014977, exon 16 of 19) -4697 NM_022478 64403 Hs.155912 NM_022478 ENSG00000139880 CDH24 CDH11L cadherin 24 protein-coding 11741 chr16 82112114 82112219 + 0 NA Intergenic Intergenic 58058 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 9326 chr14 71739697 71739843 + 0 NA 3' UTR (NM_001284245, exon 21 of 21) 3' UTR (NM_001284245, exon 21 of 21) 152199 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1 signal induced proliferation associated 1 like 1 protein-coding 3122 chr1 244863095 244863251 + 0 NA intron (NM_004501, intron 1 of 13) CpG 1352 NM_004501 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U protein-coding 30571 chrX 23807661 23807824 + 0 NA Intergenic Intergenic 24584 NR_027783 6303 Hs.28491 NM_002970 ENSG00000130066 SAT1 DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1 spermidine/spermine N1-acetyltransferase 1 protein-coding 9398 chr14 75561067 75561171 + 0 NA Intergenic Intergenic -17478 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 27936 chr8 63008044 63008139 + 0 NA Intergenic MER74A|LTR|ERVL 30230 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 UG0898H09 - uncharacterized LOC643763 ncRNA 19870 chr3 111739401 111739455 + 0 NA intron (NM_001134437, intron 1 of 17) MIR1_Amn|SINE|MIR 6948 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 13210 chr18 2516436 2516540 + 0 NA Intergenic Intergenic 55015 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 17374 chr2 239157928 239158032 + 0 NA intron (NM_006037, intron 6 of 26) intron (NM_006037, intron 6 of 26) 37477 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 3368 chr10 18651648 18651752 + 0 NA promoter-TSS (NM_182543) promoter-TSS (NM_182543) -63 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase family member 6 protein-coding 13496 chr18 45774284 45774427 + 0 NA Intergenic Intergenic 47402 NM_001146037 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 3994 chr10 80506346 80506499 + 0 NA intron (NM_030927, intron 3 of 8) LTR24B|LTR|ERV1 -24828 NR_120662 102723703 Hs.308615 NR_120662 LOC102723703 - uncharacterized LOC102723703 ncRNA 1516 chr1 111755758 111755862 + 0 NA promoter-TSS (NM_198926) promoter-TSS (NM_198926) -13 NM_198926 55924 Hs.193406 NM_019099 ENSG00000197852 FAM212B C1orf183 family with sequence similarity 212 member B protein-coding 3733 chr10 59972041 59972149 + 0 NA Intergenic L2a|LINE|L2 -11182 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 29037 chr9 33234077 33234244 + 0 NA Intergenic Intergenic -6004 NM_014471 27290 Hs.555934 NM_014471 ENSG00000122711 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 11394 chr16 56324480 56324602 + 0 NA intron (NM_020988, intron 3 of 8) intron (NM_020988, intron 3 of 8) 79021 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 13241 chr18 6995207 6995311 + 0 NA intron (NM_005559, intron 34 of 62) intron (NM_005559, intron 34 of 62) 40582 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 18437 chr21 25607432 25607529 + 0 NA promoter-TSS (NM_017446) promoter-TSS (NM_017446) 9 NM_017446 54148 Hs.420696 NM_017446 ENSG00000154719 MRPL39 C21orf92|L39mt|MRP-L5|MRPL5|MSTP003|PRED22|PRED66|RPML5 mitochondrial ribosomal protein L39 protein-coding 24559 chr6 42292368 42292379 + 0 NA intron (NM_001297573, intron 4 of 17) Tigger15a|DNA|TcMar-Tigger -74478 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 4775 chr11 8138661 8138740 + 0 NA intron (NR_144484, intron 2 of 4) LTR10C|LTR|ERV1 30394 NM_001206671 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 21295 chr4 38275392 38275496 + 0 NA Intergenic Intergenic 155490 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 8896 chr14 36976581 36976709 + 0 NA intron (NM_030631, intron 1 of 9) intron (NM_030631, intron 1 of 9) -24254 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 23792 chr5 177426306 177426500 + 0 NA promoter-TSS (NM_002082) promoter-TSS (NM_002082) -283 NM_001004105 2870 Hs.235116 NM_002082 ENSG00000198055 GRK6 GPRK6 G protein-coupled receptor kinase 6 protein-coding 4904 chr11 15507598 15507801 + 0 NA Intergenic (TTTCTC)n|Simple_repeat|Simple_repeat -136186 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 7648 chr12 110403613 110403747 + 0 NA promoter-TSS (NM_016238) promoter-TSS (NM_016238) 50 NM_001137664 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 5993 chr11 104773109 104773213 + 0 NA Intergenic Intergenic 125509 NR_034070 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 6332 chr11 129191762 129191873 + 0 NA intron (NM_001142685, intron 1 of 21) intron (NM_001142685, intron 1 of 21) 381 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 8911 chr14 37874796 37874900 + 0 NA Intergenic Intergenic 27276 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 5431 chr11 64284658 64284779 + 0 NA promoter-TSS (NM_001177358) promoter-TSS (NM_001177358) -14 NM_004322 572 Hs.370254 NM_004322 ENSG00000002330 BAD BBC2|BCL2L8 BCL2 associated agonist of cell death protein-coding 23803 chr5 178164280 178164418 + 0 NA Intergenic Intergenic -10389 NM_001034833 55651 Hs.744074 NM_017838 ENSG00000145912 NHP2 DKCB2|NHP2P|NOLA2 NHP2 ribonucleoprotein protein-coding 12394 chr17 36601370 36601525 + 0 NA promoter-TSS (NM_024864) promoter-TSS (NM_024864) -149 NM_024864 79922 Hs.194864 NM_024864 ENSG00000278619 MRM1 - mitochondrial rRNA methyltransferase 1 protein-coding 223 chr1 16159129 16159223 + 0 NA Intergenic Intergenic -3067 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 20529 chr3 159480197 159480301 + 0 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 197603 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 16962 chr2 205746501 205746606 + 0 NA intron (NM_201279, intron 10 of 15) intron (NM_201279, intron 10 of 15) 64053 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 1043 chr1 65247994 65248098 + 0 NA Intergenic Intergenic -16648 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 27142 chr7 142508524 142508548 + 0 NA Intergenic Intergenic -157763 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 7370 chr12 87440258 87440292 + 0 NA Intergenic LTR8B|LTR|ERV1 109536 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 6014 chr11 107457849 107457997 + 0 NA promoter-TSS (NM_152434) promoter-TSS (NM_152434) -77 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19-like 2, cell cycle control (S. pombe) protein-coding 30521 chrX 15675389 15675472 + 0 NA intron (NR_026551, intron 1 of 4) CpG 514 NR_026551 340591 Hs.732244 NR_026551 ENSG00000186312 CA5BP1 CA5BL|CA5BP|PRO2325 carbonic anhydrase 5B pseudogene 1 pseudo 14860 chr19 58009706 58009758 + 0 NA Intergenic CpG -6386 NM_025027 80095 Hs.654967 NM_025027 ENSG00000166704 ZNF606 ZNF328 zinc finger protein 606 protein-coding 28967 chr9 19926148 19926343 + 0 NA Intergenic Intergenic -139226 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 20392 chr3 150470578 150470682 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 62295 NM_014779 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 1852 chr1 156457301 156457436 + 0 NA Intergenic CpG -27820 NM_001320453 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 28085 chr8 80578399 80578503 + 0 NA Intergenic CpG 92238 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 21804 chr4 130712139 130712243 + 0 NA Intergenic Intergenic -940713 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LOC101927282 - uncharacterized LOC101927282 ncRNA 18826 chr22 33438373 33438455 + 0 NA intron (NM_004737, intron 7 of 15) intron (NM_004737, intron 7 of 15) -1745 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 15811 chr2 73780090 73780194 + 0 NA promoter-TSS (NM_003584) promoter-TSS (NM_003584) 15 NM_003584 8446 Hs.14611 NM_003584 ENSG00000144048 DUSP11 PIR1 dual specificity phosphatase 11 protein-coding 21060 chr3 196739730 196739876 + 0 NA promoter-TSS (NM_002577) promoter-TSS (NM_002577) -54 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 15836 chr2 74654118 74654235 + 0 NA promoter-TSS (NM_001271661) promoter-TSS (NM_001271661) -52 NM_004263 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 5470 chr11 65333760 65333908 + 0 NA promoter-TSS (NM_006268) promoter-TSS (NM_006268) 80 NM_001330308 5977 Hs.13495 NM_006268 ENSG00000133884 DPF2 REQ|UBID4|ubi-d4 double PHD fingers 2 protein-coding 22865 chr5 90474655 90474786 + 0 NA promoter-TSS (NM_203406) promoter-TSS (NM_203406) 48 NM_203406 153364 Hs.64004 NM_203406 ENSG00000176055 MBLAC2 - metallo-beta-lactamase domain containing 2 protein-coding 13368 chr18 27964938 27965042 + 0 NA intron (NM_001308176, intron 13 of 14) intron (NM_001308176, intron 13 of 14) 71595 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 13093 chr17 79839497 79839537 + 0 NA promoter-TSS (NM_003655) promoter-TSS (NM_003655) -103 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 21276 chr4 30757499 30757603 + 0 NA intron (NM_032457, intron 1 of 2) L2b|LINE|L2 37136 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 6130 chr11 116773046 116773150 + 0 NA promoter-TSS (NM_001159736) promoter-TSS (NM_001159736) -100 NM_001159736 84811 Hs.437341 NM_032725 ENSG00000137656 BUD13 Cwc26|fSAP71 BUD13 homolog protein-coding 26735 chr7 101870743 101870897 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 53218 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 13277 chr18 12337100 12337157 + 0 NA intron (NM_006796, intron 16 of 16) intron (NM_006796, intron 16 of 16) 29069 NM_001303528 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 24762 chr6 69179819 69179958 + 0 NA intron (NM_001704, intron 17 of 31) L1PA16|LINE|L1 544148 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 20497 chr3 157160807 157160834 + 0 NA promoter-TSS (NM_020307) promoter-TSS (NM_020307) -60 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 4957 chr11 18383865 18383866 + 0 NA Intergenic Intergenic -3922 NR_036116 100423016 NR_036116 ENSG00000264603 MIR3159 - microRNA 3159 ncRNA 12575 chr17 45135469 45135630 + 0 NA promoter-TSS (NM_001135705) promoter-TSS (NM_001135705) -98 NM_001135707 79777 Hs.110298 NM_024722 ENSG00000181513 ACBD4 HMFT0700 acyl-CoA binding domain containing 4 protein-coding 1417 chr1 101257924 101258144 + 0 NA Intergenic Intergenic 21285 NM_001400 1901 Hs.154210 NM_001400 ENSG00000170989 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 7932 chr13 19863589 19863693 + 0 NA promoter-TSS (NM_001142684) promoter-TSS (NM_001142684) -5 NM_001039649 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 3351 chr10 17201413 17201517 + 0 NA intron (NM_001321006, intron 1 of 8) CpG 606 NM_001321007 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 5116 chr11 33614359 33614463 + 0 NA intron (NM_012194, intron 14 of 19) MER74A|LTR|ERVL 72080 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 1951 chr1 162367240 162367344 + 0 NA exon (NM_001164757, exon 10 of 10) exon (NM_001164757, exon 10 of 10) 4309 NM_001126060 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 28815 chr8 143617510 143617669 + 0 NA promoter-TSS (NM_001317783) promoter-TSS (NM_001317783) -27 NM_003313 7264 Hs.404119 NM_003313 ENSG00000104522 TSTA3 FX|P35B|SDR4E1 tissue specific transplantation antigen P35B protein-coding 21824 chr4 139177943 139178047 + 0 NA promoter-TSS (NM_001331036) promoter-TSS (NM_001331036) -777 NM_001331036 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 17256 chr2 230712833 230712923 + 0 NA promoter-TSS (NM_016289) promoter-TSS (NM_016289) 36 NM_016289 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 9464 chr14 80941698 80941891 + 0 NA Intergenic Intergenic -2254 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 5526 chr11 66638516 66638570 + 0 NA promoter-TSS (NM_002896) promoter-TSS (NM_002896) -74 NM_001198843 5936 Hs.523822 NM_002896 ENSG00000173933 RBM4 LARK|RBM4A|ZCCHC21|ZCRB3A RNA binding motif protein 4 protein-coding 16904 chr2 200377905 200377975 + 0 NA intron (NM_001282743, intron 2 of 11) intron (NM_001282743, intron 2 of 11) 68990 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 10693 chr15 90334408 90334549 + 0 NA Intergenic MER4E|LTR|ERV1 14969 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 31167 chrX 153334074 153334220 + 0 NA promoter-TSS (NM_001080485) promoter-TSS (NM_001080485) -8 NM_001080485 10838 Hs.348963 NM_020636 ENSG00000063587 ZNF275 - zinc finger protein 275 protein-coding 10065 chr15 50137321 50137425 + 0 NA Intergenic Intergenic -18151 NM_024837 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 10605 chr15 84981147 84981253 + 0 NA promoter-TSS (NM_173454) promoter-TSS (NM_173454) 687 NM_001243137 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 4755 chr11 6737967 6738071 + 0 NA Intergenic Intergenic -16140 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 29131 chr9 69097180 69097345 + 0 NA intron (NM_001161706, intron 4 of 4) intron (NM_001161706, intron 4 of 4) -24002 NM_001170414 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 17071 chr2 215609252 215609336 + 0 NA Intergenic Intergenic -108749 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 20264 chr3 139418257 139418361 + 0 NA intron (NR_121609, intron 1 of 4) L1M1|LINE|L1 28506 NR_121609 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 12071 chr17 8186804 8186908 + 0 NA promoter-TSS (NR_039746) promoter-TSS (NR_039746) -89 NR_039746 100616406 NR_039746 ENSG00000283160 MIR4521 mir-4521 microRNA 4521 ncRNA 676 chr1 39183884 39183988 + 0 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 99769 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 23838 chr5 180467186 180467290 + 0 NA Intergenic Intergenic -27161 NM_001303241 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 21779 chr4 125735256 125735360 + 0 NA Intergenic Intergenic 228049 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 15647 chr2 63588849 63588851 + 0 NA promoter-TSS (NM_001199111) promoter-TSS (NM_001199111) -117 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 11808 chr16 87203333 87203437 + 0 NA Intergenic L1MD2|LINE|L1 -8730 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 24013 chr6 10347916 10348020 + 0 NA Intergenic Intergenic -64350 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 21364 chr4 52838372 52838476 + 0 NA Intergenic Intergenic -23904 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 3306 chr10 13758466 13758607 + 0 NA intron (NM_018027, intron 8 of 24) MER61C|LTR|ERV1 -50969 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 2640 chr1 212608378 212608544 + 0 NA promoter-TSS (NM_001674) promoter-TSS (NM_001674) -167 NM_001674 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 24654 chr6 47665217 47665340 + 0 NA intron (NM_153839, intron 2 of 10) intron (NM_153839, intron 2 of 10) 8688 NM_153839 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 9567 chr14 92472080 92472223 + 0 NA intron (NM_153646, intron 12 of 16) MER74A|LTR|ERVL -41630 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 2700 chr1 217660473 217660617 + 0 NA intron (NM_138796, intron 3 of 10) intron (NM_138796, intron 3 of 10) 29221 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 16976 chr2 206585599 206585703 + 0 NA intron (NM_003812, intron 18 of 25) intron (NM_003812, intron 18 of 25) -58576 NM_001102659 200726 NM_001102659 ENSG00000235118 LOC200726 - hCG1657980 protein-coding 6877 chr12 40692327 40692431 + 0 NA promoter-TSS (NM_001256063) promoter-TSS (NM_001256063) -63 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 28962 chr9 19404405 19404534 + 0 NA Intergenic Intergenic -4458 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 26891 chr7 117124843 117124947 + 0 NA intron (NM_018412, intron 3 of 14) Tigger12c|DNA|TcMar-Tigger 20697 NR_109981 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 21660 chr4 105146503 105146548 + 0 NA promoter-TSS (NM_001127208) promoter-TSS (NM_001127208) -160 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 30247 chr9 129835267 129835457 + 0 NA promoter-TSS (NM_006676) promoter-TSS (NM_006676) -55 NM_006676 10868 Hs.5452 NM_006676 ENSG00000136878 USP20 LSFR3A|VDU2|hVDU2 ubiquitin specific peptidase 20 protein-coding 14238 chr19 17292835 17292939 + 0 NA intron (NM_024527, intron 4 of 4) intron (NM_024527, intron 4 of 4) 10586 NM_024527 79575 Hs.515664 NM_024527 ENSG00000127220 ABHD8 - abhydrolase domain containing 8 protein-coding 28997 chr9 23769636 23769787 + 0 NA intron (NM_004432, intron 1 of 6) intron (NM_004432, intron 1 of 6) 51769 NM_001171197 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 4312 chr10 105042111 105042243 + 0 NA intron (NM_014978, intron 4 of 26) L2c|LINE|L2 -375961 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 25788 chr7 19664016 19664109 + 0 NA Intergenic L1MB5|LINE|L1 41374 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 25702 chr7 13099273 13099377 + 0 NA Intergenic Charlie4z|DNA|hAT-Charlie 412039 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 11297 chr16 48123239 48123383 + 0 NA intron (NM_033226, intron 10 of 28) L3|LINE|CR1 23459 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 11663 chr16 75623271 75623432 + 0 NA promoter-TSS (NM_001324444) promoter-TSS (NM_001324444) -28 NM_001324453 23536 Hs.729312 NM_012091 ENSG00000065457 ADAT1 HADAT1 adenosine deaminase, tRNA specific 1 protein-coding 21016 chr3 194322869 194322973 + 0 NA Intergenic Intergenic -10117 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 27039 chr7 133913386 133913490 + 0 NA intron (NM_021807, intron 12 of 17) L2b|LINE|L2 -88550 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 20522 chr3 158918094 158918198 + 0 NA Intergenic Intergenic 116220 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 11077 chr16 18998832 18999016 + 0 NA intron (NM_001160364, intron 1 of 15) intron (NM_001160364, intron 1 of 15) 14637 NM_001160364 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 24340 chr6 30749715 30749872 + 0 NA Intergenic Intergenic -5243 NM_003897 8870 Hs.76095 NM_003897 ENSG00000137331 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 21135 chr4 4290175 4290265 + 0 NA promoter-TSS (NM_001145725) promoter-TSS (NM_001145725) 23 NR_138481 166793 Hs.419997 NM_145291 ENSG00000168826 ZBTB49 ZNF509 zinc finger and BTB domain containing 49 protein-coding 9210 chr14 64755974 64756138 + 0 NA intron (NM_001024858, intron 31 of 34) LTR60B|LTR|ERV1 29630 NR_107009 102465841 NR_107009 ENSG00000070182 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 29613 chr9 95317760 95317850 + 0 NA promoter-TSS (NM_001243743) promoter-TSS (NM_001243743) -96 NM_001243744 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC Fanconi anemia complementation group C protein-coding 29362 chr9 81626661 81626765 + 0 NA intron (NM_005077, intron 8 of 19) intron (NM_005077, intron 8 of 19) 62822 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 26851 chr7 114922409 114922513 + 0 NA exon (NM_199072, exon 1 of 5) exon (NM_199072, exon 1 of 5) 307 NM_001166345 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC MyoD family inhibitor domain containing protein-coding 18383 chr20 62350372 62350393 + 0 NA intron (NM_005560, intron 6 of 79) intron (NM_005560, intron 6 of 79) -2628 NR_109922 101928158 Hs.473256 NR_109922 ENSG00000228812 LAMA5-AS1 - LAMA5 antisense RNA 1 ncRNA 8026 chr13 27960883 27960987 + 0 NA Intergenic CpG 7409 NR_135254 100132234 Hs.197435 NR_135254 ENSG00000260704 LINC00543 - long intergenic non-protein coding RNA 543 ncRNA 24549 chr6 42099731 42099931 + 0 NA Intergenic Intergenic 43146 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 24008 chr6 10202260 10202360 + 0 NA Intergenic LTR32|LTR|ERVL -210008 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 9391 chr14 75277172 75277276 + 0 NA Intergenic CpG -1554 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 20894 chr3 188286270 188286374 + 0 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 60917 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 23425 chr5 145531510 145531669 + 0 NA Intergenic Intergenic 303780 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 10926 chr16 3401056 3401177 + 0 NA promoter-TSS (NM_003450) promoter-TSS (NM_003450) -51 NM_001324345 54925 Hs.592078 NM_017810 ENSG00000140987 ZSCAN32 HCCS-5|ZNF434 zinc finger and SCAN domain containing 32 protein-coding 29090 chr9 36612946 36613050 + 0 NA intron (NR_046337, intron 8 of 17) L2a|LINE|L2 40136 NR_046337 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 15694 chr2 66433540 66433639 + 0 NA promoter-TSS (NR_046438) promoter-TSS (NR_046438) -119 NR_046438 730198 Hs.526753 NR_046438 MEIS1-AS3 - MEIS1 antisense RNA 3 ncRNA 30620 chrX 39755755 39755881 + 0 NA Intergenic Intergenic -81743 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 24960 chr6 105403090 105403118 + 0 NA promoter-TSS (NM_002726) promoter-TSS (NM_002726) 20 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 26793 chr7 106718329 106718433 + 0 NA Intergenic Intergenic -57193 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 17698 chr20 18263807 18263911 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -24424 NM_001282996 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 27296 chr7 158803054 158803199 + 0 NA intron (NM_020728, intron 1 of 21) intron (NM_020728, intron 1 of 21) 26502 NM_020728 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 16296 chr2 128305300 128305432 + 0 NA intron (NM_004807, intron 1 of 1) intron (NM_004807, intron 1 of 1) 13231 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 5844 chr11 92853082 92853207 + 0 NA intron (NM_001008781, intron 18 of 24) MER52A|LTR|ERV1 62484 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 15284 chr2 29748265 29748370 + 0 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 173294 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 16137 chr2 111966916 111967020 + 0 NA intron (NM_006343, intron 5 of 18) MIR|SINE|MIR 68354 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 1829 chr1 155962011 155962198 + 0 NA intron (NM_004723, intron 10 of 21) intron (NM_004723, intron 10 of 21) -10768 NR_106796 102465442 NR_106796 ENSG00000277817 MIR6738 hsa-mir-6738 microRNA 6738 ncRNA 13320 chr18 23331414 23331525 + 0 NA intron (NR_134877, intron 12 of 13) intron (NR_134877, intron 12 of 13) 106500 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 10373 chr15 70198003 70198059 + 0 NA Intergenic Intergenic -100114 NM_001105192 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 24563 chr6 42338735 42338843 + 0 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) 113262 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 27978 chr8 67064315 67064419 + 0 NA promoter-TSS (NM_024790) promoter-TSS (NM_024790) -1 NM_024790 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 16830 chr2 190718841 190719067 + 0 NA Intergenic LTR104_Mam|LTR|Gypsy 59796 NM_001321314 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 27707 chr8 38382539 38382589 + 0 NA promoter-TSS (NM_017778) promoter-TSS (NM_017778) -292 NM_017778 54904 Hs.434966 NM_017778 ENSG00000147548 NSD3 KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328 nuclear receptor binding SET domain protein 3 protein-coding 25361 chr6 152575933 152575934 + 0 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 60918 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 9837 chr15 33068729 33068891 + 0 NA promoter-TSS (NM_001103184) promoter-TSS (NM_001103184) -778 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 4487 chr10 119725866 119726004 + 0 NA promoter-TSS (NM_001243195) promoter-TSS (NM_001243195) -112 NM_001243195 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 3150 chr1 247331818 247331970 + 0 NA promoter-TSS (NM_032752) promoter-TSS (NM_032752) 46 NM_001329733 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 24400 chr6 32861326 32861462 + 0 NA Intergenic L1MEf|LINE|L1 7233 NM_002800 5698 Hs.654585 NM_002800 ENSG00000240065 PSMB9 LMP2|PSMB6i|RING12|beta1i proteasome subunit beta 9 protein-coding 4678 chr11 1051159 1051315 + 0 NA intron (NM_001323425, intron 1 of 3).2 intron (NM_001323425, intron 1 of 3).2 1459 NM_001323425 101927503 Hs.436626 NM_001323425 LOC101927503 - uncharacterized LOC101927503 protein-coding 11930 chr17 2893521 2893625 + 0 NA intron (NM_001330058, intron 2 of 24) intron (NM_001330058, intron 2 of 24) 72322 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 2729 chr1 219812753 219812835 + 0 NA Intergenic Intergenic 115857 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 15652 chr2 64056150 64056254 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -37122 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54, GARP complex subunit protein-coding 6897 chr12 42922313 42922452 + 0 NA Intergenic Intergenic 230166 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LOC105369739 - uncharacterized LOC105369739 ncRNA 28495 chr8 118622175 118622279 + 0 NA promoter-TSS (NM_207506) promoter-TSS (NM_207506) -232 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 17360 chr2 238239987 238240125 + 0 NA promoter-TSS (NM_018645) promoter-TSS (NM_018645) 68 NM_001142853 55502 Hs.42949 NM_018645 ENSG00000144485 HES6 C-HAIRY1|HES-6|bHLHb41|bHLHc23 hes family bHLH transcription factor 6 protein-coding 3304 chr10 13690575 13690680 + 0 NA intron (NM_018027, intron 15 of 24) intron (NM_018027, intron 15 of 24) 16940 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 1461 chr1 109042051 109042179 + 0 NA 5' UTR (NM_001142550, exon 1 of 15) 5' UTR (NM_001142550, exon 1 of 15) 113 NM_014969 22911 Hs.570055 NM_014969 ENSG00000085433 WDR47 - WD repeat domain 47 protein-coding 31070 chrX 132489360 132489511 + 0 NA intron (NM_001170704, intron 1 of 8) CpG 533 NM_001170704 55796 Hs.105134 NM_018388 ENSG00000076770 MBNL3 CHCR|MBLX|MBLX39|MBXL muscleblind like splicing regulator 3 protein-coding 13338 chr18 24014461 24014523 + 0 NA promoter-TSS (NM_001243425) promoter-TSS (NM_001243425) 72 NM_001243425 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 12535 chr17 43170975 43171182 + 0 NA promoter-TSS (NR_110868) promoter-TSS (NR_110868) 108 NM_001291571 4077 Hs.277721 NM_005899 ENSG00000188554 NBR1 1A1-3B|IAI3B|M17S2|MIG19 NBR1, autophagy cargo receptor protein-coding 18059 chr20 44204235 44204367 + 0 NA intron (NM_016470, intron 2 of 3) intron (NM_016470, intron 2 of 3) 6605 NM_016470 51526 Hs.75798 NM_016470 ENSG00000132823 OSER1 C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1 oxidative stress responsive serine rich 1 protein-coding 27309 chr8 631018 631122 + 0 NA intron (NM_001303100, intron 5 of 5) intron (NM_001303100, intron 5 of 5) -85289 NM_175075 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 26491 chr7 80564025 80564169 + 0 NA Intergenic L1PA13|LINE|L1 -38091 NM_001001547 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 3188 chr10 3172803 3172957 + 0 NA promoter-TSS (NM_014889) promoter-TSS (NM_014889) -39 NR_144639 10531 Hs.528300 NM_014889 ENSG00000107959 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 30981 chrX 113513150 113513254 + 0 NA intron (NR_110399, intron 3 of 3) MER58C|DNA|hAT-Charlie 425016 NR_131204 105463123 Hs.550218 NR_131204 ENSG00000241743 XACT - X active specific transcript (non-protein coding) ncRNA 13966 chr19 4870269 4870372 + 0 NA Intergenic MIR1_Amn|SINE|MIR -2552 NM_001164189 10226 Hs.140452 NM_005817 ENSG00000105355 PLIN3 M6PRBP1|PP17|TIP47 perilipin 3 protein-coding 15755 chr2 69997489 69997593 + 0 NA intron (NR_033872, intron 7 of 10) intron (NR_033872, intron 7 of 10) -35276 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 25866 chr7 23713954 23714061 + 0 NA intron (NM_032944, intron 3 of 23) Tigger3b|DNA|TcMar-Tigger 3681 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 10481 chr15 76312933 76313050 + 0 NA Intergenic L2a|LINE|L2 -1522 NM_001127716 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein alpha subunit protein-coding 9581 chr14 93139235 93139400 + 0 NA Intergenic L2a|LINE|L2 -23398 NM_001142594 3705 Hs.308122 NM_014216 ENSG00000100605 ITPK1 ITRPK1 inositol-tetrakisphosphate 1-kinase protein-coding 21711 chr4 112636933 112637080 + 0 NA promoter-TSS (NM_018392) promoter-TSS (NM_018392) -11 NM_018392 55345 Hs.380346 NM_018392 ENSG00000138658 ZGRF1 C4orf21 zinc finger GRF-type containing 1 protein-coding 24526 chr6 41028113 41028208 + 0 NA 3' UTR (NM_173561, exon 9 of 9) 3' UTR (NM_173561, exon 9 of 9) -4880 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 13443 chr18 36067502 36067655 + 0 NA promoter-TSS (NM_001303411) promoter-TSS (NM_001303411) 16 NM_001303411 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 27717 chr8 39032552 39032562 + 0 NA intron (NM_003816, intron 11 of 21) L1P2|LINE|L1 35571 NM_003816 8754 Hs.591852 NM_003816 ENSG00000168615 ADAM9 CORD9|MCMP|MDC9|Mltng ADAM metallopeptidase domain 9 protein-coding 10882 chr16 2163380 2163417 + 0 NA intron (NM_032271, intron 1 of 20) intron (NM_032271, intron 1 of 20) 7600 NM_032271 84231 Hs.713632 NM_032271 ENSG00000131653 TRAF7 RFWD1|RNF119 TNF receptor associated factor 7 protein-coding 18192 chr20 50670576 50670714 + 0 NA intron (NM_001290268, intron 1 of 21) intron (NM_001290268, intron 1 of 21) 20885 NR_110890 140876 Hs.372578 NM_080829 ENSG00000042062 FAM65C C20orf175|C20orf176 family with sequence similarity 65 member C protein-coding 16995 chr2 207513898 207514002 + 0 NA Intergenic Intergenic -15942 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 30042 chr9 121335255 121335402 + 0 NA Intergenic Intergenic 34976 NR_073037 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 12628 chr17 48678555 48678705 + 0 NA Intergenic CpG 43890 NM_032391 84366 Hs.116467 NM_032391 ENSG00000159182 PRAC1 C17orf92|PRAC prostate cancer susceptibility candidate 1 protein-coding 17840 chr20 31572965 31573000 + 0 NA intron (NR_046853, intron 1 of 2) intron (NR_046853, intron 1 of 2) 281 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 13697 chr18 62662288 62662392 + 0 NA Intergenic Intergenic -53099 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 18832 chr22 35399977 35400112 + 0 NA promoter-TSS (NM_006739) promoter-TSS (NM_006739) -79 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 1178 chr1 84156402 84156506 + 0 NA intron (NM_182948, intron 1 of 9) MamGypLTR3a|LTR|Gypsy -7730 NM_001300917 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 21441 chr4 73620406 73620521 + 0 NA exon (NM_001270392, exon 1 of 10) exon (NM_001270392, exon 1 of 10) 107 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 18540 chr21 39030559 39030663 + 0 NA Intergenic Intergenic -52837 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 24384 chr6 31862858 31863003 + 0 NA promoter-TSS (NM_000434) promoter-TSS (NM_000434) 2 NM_000434 4758 Hs.520037 NM_000434 ENSG00000204386 NEU1 NANH|NEU|SIAL1 neuraminidase 1 protein-coding 6459 chr12 3236937 3237041 + 0 NA intron (NM_006675, intron 3 of 8) L2b|LINE|L2 -144360 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 6862 chr12 38282994 38283098 + 0 NA Intergenic Intergenic -33709 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 26694 chr7 100127083 100127130 + 0 NA intron (NM_203397, intron 1 of 1) CpG 412 NM_203397 255374 Hs.632319 NM_203397 ENSG00000214309 MBLAC1 - metallo-beta-lactamase domain containing 1 protein-coding 13938 chr19 3969581 3969685 + 0 NA intron (NM_001348, intron 2 of 8) intron (NM_001348, intron 2 of 8) 1490 NM_001348 1613 Hs.631844 NM_001348 ENSG00000167657 DAPK3 DLK|ZIP|ZIPK death associated protein kinase 3 protein-coding 458 chr1 27542437 27542591 + 0 NA intron (NM_001029882, intron 6 of 6) intron (NM_001029882, intron 6 of 6) -52327 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family member 2 protein-coding 10374 chr15 70324332 70324384 + 0 NA Intergenic Intergenic -226441 NM_001105192 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 28167 chr8 89856826 89857015 + 0 NA Intergenic MamRep1879|DNA|hAT-Tip100? -44948 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 18671 chr22 21735764 21735868 + 0 NA promoter-TSS (NM_013313) promoter-TSS (NM_013313) 18 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 17696 chr20 18252744 18252861 + 0 NA Intergenic Intergenic -35481 NM_001282996 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 16783 chr2 185979885 185980030 + 0 NA Intergenic LTR8B|LTR|ERV1 106360 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 4361 chr10 111481464 111481503 + 0 NA Intergenic LTR18A|LTR|ERVL 404451 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 5499 chr11 65890544 65890648 + 0 NA 5' UTR (NM_006848, exon 1 of 1) 5' UTR (NM_006848, exon 1 of 1) 192 NM_006848 11007 Hs.66713 NM_006848 ENSG00000175602 CCDC85B DIPA coiled-coil domain containing 85B protein-coding 29836 chr9 109449498 109449655 + 0 NA 5' UTR (NM_001145370, exon 1 of 20) 5' UTR (NM_001145370, exon 1 of 20) 1808 NM_001145369 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 14109 chr19 11293862 11293984 + 0 NA Intergenic CpG -2216 NM_001282509 26526 Hs.579784 NM_012466 ENSG00000130167 TSPAN16 TM-8|TM4-B|TM4SF16 tetraspanin 16 protein-coding 2507 chr1 206612421 206612526 + 0 NA promoter-TSS (NM_001201478) promoter-TSS (NM_001201478) 78 NM_006893 1939 Hs.497581 NM_006893 ENSG00000143486 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 29662 chr9 98119217 98119343 + 0 NA promoter-TSS (NM_014788) promoter-TSS (NM_014788) 73 NM_033219 9830 Hs.575631 NM_014788 ENSG00000106785 TRIM14 - tripartite motif containing 14 protein-coding 21026 chr3 194730509 194730634 + 0 NA intron (NR_037891, intron 1 of 3) LTR9|LTR|ERV1 22150 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 25739 chr7 16645734 16645861 + 0 NA promoter-TSS (NM_020319) promoter-TSS (NM_020319) 20 NM_020319 57037 Hs.157378 NM_020319 ENSG00000106524 ANKMY2 ZMYND20 ankyrin repeat and MYND domain containing 2 protein-coding 17156 chr2 222757087 222757191 + 0 NA Intergenic Intergenic 85401 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 9736 chr14 104078092 104078244 + 0 NA Intergenic LTR41C|LTR|ERVL -7518 NM_001080464 374569 Hs.146239 NM_001080464 ENSG00000166183 ASPG C14orf76|GPA/WT asparaginase protein-coding 19581 chr3 57555959 57556045 + 0 NA promoter-TSS (NM_001322177) promoter-TSS (NM_001322177) -245 NM_001322177 201626 Hs.572993 NM_177966 ENSG00000174840 PDE12 2'-PDE|2-PDE phosphodiesterase 12 protein-coding 23102 chr5 122129467 122129571 + 0 NA promoter-TSS (NM_207317) promoter-TSS (NM_207317) 6 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 18756 chr22 29267902 29268052 + 0 NA promoter-TSS (NM_001163287) promoter-TSS (NM_001163287) 18 NR_138044 25807 Hs.106730 NM_012265 ENSG00000100263 RHBDD3 C22orf3|HS984G1A|PTAG rhomboid domain containing 3 protein-coding 29514 chr9 90801648 90801807 + 0 NA promoter-TSS (NM_003177) promoter-TSS (NM_003177) 47 NM_001135052 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 17552 chr20 6708091 6708261 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -59922 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 11824 chr16 87853604 87853658 + 0 NA intron (NM_003486, intron 1 of 9) intron (NM_003486, intron 1 of 9) 15868 NM_003486 8140 Hs.513797 NM_003486 ENSG00000103257 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16 solute carrier family 7 member 5 protein-coding 4340 chr10 110395874 110396001 + 0 NA Intergenic Intergenic -90988 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 24835 chr6 80438858 80438962 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR 332300 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 11345 chr16 53022512 53022616 + 0 NA Intergenic Intergenic 30309 NR_136518 105371267 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 18287 chr20 56358771 56358875 + 0 NA promoter-TSS (NM_080821) promoter-TSS (NM_080821) -104 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 14102 chr19 11085504 11085625 + 0 NA Intergenic Intergenic -3798 NM_001195799 3949 Hs.213289 NM_000527 ENSG00000130164 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 3936 chr10 76352401 76352552 + 0 NA intron (NR_131178, intron 7 of 7) MER44B|DNA|TcMar-Tigger -535568 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 16535 chr2 159712362 159712470 + 0 NA promoter-TSS (NR_110586) promoter-TSS (NR_110586) 19 NR_110586 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 350 chr1 23539994 23540116 + 0 NA Intergenic Intergenic -8835 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 9234 chr14 65478738 65478842 + 0 NA intron (NM_004480, intron 2 of 9) MER57E1|LTR|ERV1 7688 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 11647 chr16 75245507 75245534 + 0 NA intron (NM_001170715, intron 1 of 6) intron (NM_001170715, intron 1 of 6) 2806 NM_001170719 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 11051 chr16 15056073 15056257 + 0 NA promoter-TSS (NM_001270766) promoter-TSS (NM_001270766) -86 NM_001270766 123803 Hs.592045 NM_173474 ENSG00000157045 NTAN1 PNAA|PNAD N-terminal asparagine amidase protein-coding 9834 chr15 32856010 32856098 + 0 NA intron (NM_001277313, intron 17 of 20) intron (NM_001277313, intron 17 of 20) -137189 NR_109767 100131315 Hs.610545 NR_109767 ENSG00000259721 LOC100131315 - uncharacterized LOC100131315 ncRNA 18464 chr21 30256084 30256272 + 0 NA Intergenic MLT2B1|LTR|ERVL 26780 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 1810 chr1 155208721 155208861 + 0 NA promoter-TSS (NM_198883) promoter-TSS (NM_198883) 92 NM_002455 4580 Hs.490874 NM_002455 ENSG00000173171 MTX1 MTX|MTXN metaxin 1 protein-coding 6233 chr11 122189399 122189503 + 0 NA intron (NR_137179, intron 2 of 4) intron (NR_137179, intron 2 of 4) -8819 NR_137184 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 11351 chr16 53084171 53084305 + 0 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) 29205 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 24062 chr6 13336785 13336868 + 0 NA Intergenic Intergenic -8243 NM_001258457 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 20834 chr3 184812046 184812191 + 0 NA promoter-TSS (NM_001009921) promoter-TSS (NM_001009921) -25 NM_001009921 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8, CORVET complex subunit protein-coding 2754 chr1 221603002 221603043 + 0 NA Intergenic AluSz|SINE|Alu 133878 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 22600 chr5 60700092 60700174 + 0 NA promoter-TSS (NM_001145208) promoter-TSS (NM_001145208) 33 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 1546 chr1 114510716 114510756 + 0 NA exon (NM_015906, exon 1 of 20) exon (NM_015906, exon 1 of 20) 424 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 29502 chr9 89686272 89686415 + 0 NA intron (NR_024280, intron 3 of 5) intron (NR_024280, intron 3 of 5) 46560 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 30761 chrX 55717549 55717698 + 0 NA promoter-TSS (NM_006064) promoter-TSS (NM_006064) -54 NM_016656 10325 Hs.50282 NM_006064 ENSG00000083750 RRAGB RAGB|bA465E19.1 Ras related GTP binding B protein-coding 17586 chr20 10593012 10593116 + 0 NA intron (NM_001009608, intron 4 of 7) intron (NM_001009608, intron 4 of 7) 56631 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 9208 chr14 64723007 64723111 + 0 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 18651 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 17533 chr20 5714761 5714874 + 0 NA Intergenic Intergenic -35570 NM_152504 149840 Hs.529340 NM_152504 ENSG00000171984 C20orf196 - chromosome 20 open reading frame 196 protein-coding 15949 chr2 88968011 88968138 + 0 NA Intergenic MLT1A1|LTR|ERVL-MaLR 155704 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 24323 chr6 30516561 30516703 + 0 NA Intergenic Intergenic 27226 NM_005516 3133 Hs.650174 NM_005516 ENSG00000204592 HLA-E HLA-6.2|QA1 major histocompatibility complex, class I, E protein-coding 20503 chr3 157437629 157437735 + 0 NA exon (NM_002852, exon 2 of 3) exon (NM_002852, exon 2 of 3) 891 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 825 chr1 46520707 46520811 + 0 NA Intergenic Intergenic 13763 NM_172225 127343 Hs.375623 NM_147192 ENSG00000197587 DMBX1 MBX|OTX3|PAXB diencephalon/mesencephalon homeobox 1 protein-coding 917 chr1 55233573 55233677 + 0 NA Intergenic Intergenic 7984 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 30849 chrX 78104065 78104210 + 0 NA promoter-TSS (NM_000291) promoter-TSS (NM_000291) -32 NM_000291 5230 Hs.78771 NM_000291 ENSG00000102144 PGK1 HEL-S-68p|MIG10|PGKA phosphoglycerate kinase 1 protein-coding 6003 chr11 106077388 106077501 + 0 NA promoter-TSS (NM_015423) promoter-TSS (NM_015423) -121 NM_015423 60496 Hs.524009 NM_015423 ENSG00000149313 AASDHPPT AASD-PPT|ACPS|CGI-80|LYS2|LYS5 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase protein-coding 495 chr1 29182077 29182181 + 0 NA promoter-TSS (NM_005626) promoter-TSS (NM_005626) -4 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 4977 chr11 19380514 19380618 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 29842 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 29899 chr9 112754775 112754801 + 0 NA intron (NM_001012994, intron 1 of 8) intron (NM_001012994, intron 1 of 8) 3934 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 9176 chr14 63175091 63175130 + 0 NA Intergenic Intergenic -29274 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 19620 chr3 63872348 63872452 + 0 NA intron (NM_000333, intron 1 of 12) intron (NM_000333, intron 1 of 12) 7843 NM_000333 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7 ataxin 7 protein-coding 8048 chr13 30115024 30115133 + 0 NA Intergenic CpG -6203 NR_046998 100874146 Hs.574116 NR_046998 ENSG00000224511 LINC00365 - long intergenic non-protein coding RNA 365 ncRNA 30621 chrX 39892001 39892128 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 54503 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 24660 chr6 47788233 47788360 + 0 NA intron (NR_033806, intron 1 of 6) intron (NR_033806, intron 1 of 6) 1228 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 2460 chr1 204417717 204417870 + 0 NA Intergenic L2c|LINE|L2 -5976 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 27674 chr8 35109441 35109545 + 0 NA Intergenic Intergenic -125964 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 4293 chr10 103918426 103918580 + 0 NA promoter-TSS (NM_024928) promoter-TSS (NM_024928) -216 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1, CST complex subunit protein-coding 17647 chr20 13800842 13800976 + 0 NA intron (NM_024120, intron 6 of 10) MLT1H|LTR|ERVL-MaLR 15883 NR_029377 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 12802 chr17 61356844 61356948 + 0 NA intron (NM_001099432, intron 23 of 24) intron (NM_001099432, intron 23 of 24) 10808 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 15085 chr2 16633919 16634023 + 0 NA intron (NM_030797, intron 1 of 11) intron (NM_030797, intron 1 of 11) 31895 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 26986 chr7 129434368 129434489 + 0 NA promoter-TSS (NM_001134336) promoter-TSS (NM_001134336) -5 NM_001134336 57464 Hs.489988 NM_020704 ENSG00000128578 STRIP2 FAM40B|FAR11B striatin interacting protein 2 protein-coding 28142 chr8 86342413 86342608 + 0 NA promoter-TSS (NM_007013) promoter-TSS (NM_007013) -255 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 21461 chr4 75724589 75724674 + 0 NA 5' UTR (NM_001290049, exon 1 of 26) 5' UTR (NM_001290049, exon 1 of 26) 109 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 2976 chr1 233791239 233791343 + 0 NA Intergenic Intergenic -113421 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 19914 chr3 113747009 113747070 + 0 NA promoter-TSS (NM_025146) promoter-TSS (NM_025146) 20 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ATP6A1|ATP6V1A1|HO68|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 10526 chr15 79923692 79923876 + 0 NA promoter-TSS (NM_001199760) promoter-TSS (NM_001199760) -30 NR_037652 400410 Hs.729127 NM_001100879 ENSG00000180953 ST20 HCCS-1 suppressor of tumorigenicity 20 protein-coding 13253 chr18 9334692 9334796 + 0 NA promoter-TSS (NM_020648) promoter-TSS (NM_020648) -23 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 3238 chr10 5861473 5861535 + 0 NA TTS (NM_019046) TTS (NM_019046) -28068 NM_001258452 84893 Hs.498543 NM_032807 ENSG00000134452 FBXO18 FBH1|Fbx18|hFBH1 F-box protein, helicase, 18 protein-coding 3421 chr10 23359841 23359945 + 0 NA Intergenic Intergenic -15050 NM_153714 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552|bA215C7.4 chromosome 10 open reading frame 67 protein-coding 5531 chr11 66709962 66710066 + 0 NA intron (NM_006946, intron 9 of 36) intron (NM_006946, intron 9 of 36) 11385 NM_006946 6712 Hs.26915 NM_006946 ENSG00000173898 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin beta, non-erythrocytic 2 protein-coding 2274 chr1 192861938 192862099 + 0 NA Intergenic Intergenic 52979 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G-protein signaling 2 protein-coding 20608 chr3 169173335 169173435 + 0 NA intron (NM_001205194, intron 1 of 15) L2b|LINE|L2 -25651 NM_001164000 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 14169 chr19 13858677 13858792 + 0 NA Intergenic Intergenic -15965 NR_029613 406957 NR_029613 ENSG00000207613 MIR181C MIRN181C|mir-181c microRNA 181c ncRNA 22250 chr5 14352141 14352245 + 0 NA intron (NR_134469, intron 11 of 56) intron (NR_134469, intron 11 of 56) 208491 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 2002 chr1 166839351 166839460 + 0 NA promoter-TSS (NM_001314014) promoter-TSS (NM_001314014) 1 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element with KRAB domain protein-coding 30114 chr9 125649447 125649551 + 0 NA intron (NM_001006618, intron 4 of 7) intron (NM_001006618, intron 4 of 7) 57735 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 5873 chr11 94152427 94152579 + 0 NA intron (NM_015368, intron 1 of 4) intron (NM_015368, intron 1 of 4) 23575 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 1068 chr1 67552535 67552634 + 0 NA Intergenic Intergenic -122144 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 2088 chr1 174799699 174799704 + 0 NA promoter-TSS (NM_001243765) promoter-TSS (NM_001243765) -196 NM_001330989 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 12655 chr17 49995152 49995300 + 0 NA promoter-TSS (NM_005220) promoter-TSS (NM_005220) -2 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 9617 chr14 95741158 95741284 + 0 NA Intergenic MIR|SINE|MIR -27025 NR_049726 8115 Hs.2484 NM_021966 ENSG00000100721 TCL1A TCL1 T-cell leukemia/lymphoma 1A protein-coding 29922 chr9 114278894 114279048 + 0 NA intron (NM_032888, intron 37 of 60) intron (NM_032888, intron 37 of 60) -44052 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 19552 chr3 52705688 52705759 + 0 NA promoter-TSS (NM_014041) promoter-TSS (NM_014041) -118 NM_014041 28972 Hs.11125 NM_014041 ENSG00000114902 SPCS1 HSPC033|SPC1|SPC12|YJR010C-A signal peptidase complex subunit 1 protein-coding 16116 chr2 110114340 110114509 + 0 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) 2142 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T-cell differentiation protein like protein-coding 30106 chr9 125241332 125241433 + 0 NA promoter-TSS (NM_005347) promoter-TSS (NM_005347) 5 NM_005347 3309 Hs.743241 NM_005347 ENSG00000044574 HSPA5 BIP|GRP78|HEL-S-89n|MIF2 heat shock protein family A (Hsp70) member 5 protein-coding 2134 chr1 178655848 178655966 + 0 NA Intergenic Intergenic -21842 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 15912 chr2 85602671 85602852 + 0 NA promoter-TSS (NM_001031738) promoter-TSS (NM_001031738) -62 NM_001031738 129303 Hs.591559 NM_153342 ENSG00000168890 TMEM150A TM6P1|TMEM150|TTN1 transmembrane protein 150A protein-coding 30475 chrX 9380040 9380144 + 0 NA Intergenic Intergenic -83203 NM_001139468 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1X-linked protein-coding 19022 chr22 46250188 46250338 + 0 NA promoter-TSS (NM_207327) promoter-TSS (NM_207327) 33 NM_207327 150383 Hs.103110 NM_207327 ENSG00000205643 CDPF1 C22orf40 cysteine rich DPF motif domain containing 1 protein-coding 9440 chr14 77800042 77800146 + 0 NA promoter-TSS (NM_001142545) promoter-TSS (NM_001142545) 11 NM_020421 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 3239 chr10 5889868 5889972 + 0 NA promoter-TSS (NM_001009941) promoter-TSS (NM_001009941) -23 NM_019046 54522 Hs.289828 NM_019046 ENSG00000134461 ANKRD16 - ankyrin repeat domain 16 protein-coding 30292 chr9 132079861 132079988 + 0 NA promoter-TSS (NM_001253881) promoter-TSS (NM_001253881) -37 NM_001253881 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 19213 chr3 15982987 15983091 + 0 NA Intergenic Intergenic 109268 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 13104 chr17 80454699 80454876 + 0 NA Intergenic CpG 21817 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 5309 chr11 59247703 59247805 + 0 NA Intergenic Intergenic -34733 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1 macrophage expressed 1 protein-coding 2045 chr1 169113704 169113808 + 0 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 7047 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 19627 chr3 65399082 65399186 + 0 NA intron (NM_001033057, intron 13 of 22) intron (NM_001033057, intron 13 of 22) -494682 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 25202 chr6 137218726 137218830 + 0 NA intron (NM_000416, intron 1 of 6) Tigger3a|DNA|TcMar-Tigger 652 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 16375 chr2 137179672 137179776 + 0 NA intron (NM_001316349, intron 7 of 27) intron (NM_001316349, intron 7 of 27) 414162 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 19124 chr3 8740263 8740382 + 0 NA intron (NM_033337, intron 1 of 1) MLT1F1|LTR|ERVL-MaLR 6522 NM_001234 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 30956 chrX 108439681 108439785 + 0 NA promoter-TSS (NM_033380) promoter-TSS (NM_033380) -111 NM_000495 1287 Hs.369089 NM_000495 ENSG00000188153 COL4A5 ASLN|ATS|CA54 collagen type IV alpha 5 chain protein-coding 4258 chr10 102502851 102503003 + 0 NA promoter-TSS (NM_005736) promoter-TSS (NM_005736) -172 NM_005736 10121 Hs.153961 NM_005736 ENSG00000138107 ACTR1A ARP1|Arp1A|CTRN1 ARP1 actin-related protein 1 homolog A, centractin alpha protein-coding 29865 chr9 111483231 111483309 + 0 NA intron (NM_001080398, intron 3 of 50) CpG 1475 NM_001080398 23392 Hs.368255 NM_001080398 ENSG00000136813 KIAA0368 ECM29 KIAA0368 protein-coding 25476 chr6 166736736 166736840 + 0 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -109511 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 16006 chr2 99141387 99141536 + 0 NA promoter-TSS (NM_144706) promoter-TSS (NM_144706) 113 NM_182911 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79 testis specific 10 protein-coding 25909 chr7 26549658 26549836 + 0 NA Intergenic Intergenic -10922 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 7098 chr12 54935385 54935489 + 0 NA Intergenic L3b|LINE|CR1 38295 NM_014796 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 26733 chr7 101856905 101857009 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 39355 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 5825 chr11 88555128 88555255 + 0 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 50615 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 23397 chr5 142275647 142275721 + 0 NA Intergenic Intergenic 42638 NR_131221 100642175 Hs.684549 NR_131221 ENSG00000281881 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 20855 chr3 185900372 185900476 + 0 NA Intergenic Intergenic 37712 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog (Drosophila) protein-coding 4475 chr10 119466764 119466868 + 0 NA Intergenic Intergenic 69717 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G-protein signaling 10 protein-coding 30065 chr9 122642417 122642475 + 0 NA Intergenic Intergenic -12911 NM_001004450 347169 Hs.553710 NM_001004450 ENSG00000280094 OR1B1 OR9-26|OR9-B olfactory receptor family 1 subfamily B member 1 (gene/pseudogene) protein-coding 7419 chr12 92080508 92080587 + 0 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 61166 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 13489 chr18 45402828 45402932 + 0 NA intron (NM_001242692, intron 1 of 20) intron (NM_001242692, intron 1 of 20) 104156 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 28946 chr9 16030587 16030691 + 0 NA Intergenic Intergenic 222468 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 30375 chr9 136992700 136992804 + 0 NA intron (NR_138076, intron 2 of 5) intron (NR_138076, intron 2 of 5) 334 NR_138073 286257 Hs.409582 NM_183241 ENSG00000148362 C9orf142 PAXX|XLS chromosome 9 open reading frame 142 protein-coding 27922 chr8 61054387 61054491 + 0 NA Intergenic Intergenic -86691 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 17236 chr2 229407344 229407448 + 0 NA intron (NM_139072, intron 9 of 12) intron (NM_139072, intron 9 of 12) -136055 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 12391 chr17 36544910 36545052 + 0 NA promoter-TSS (NM_024835) promoter-TSS (NM_024835) 93 NM_024835 79893 Hs.514116 NM_024835 ENSG00000278311 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 29886 chr9 112145994 112146076 + 0 NA intron (NM_022486, intron 3 of 16) intron (NM_022486, intron 3 of 16) 29262 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 18762 chr22 29603384 29603540 + 0 NA promoter-TSS (NM_016418) promoter-TSS (NM_016418) -94 NM_181830 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 15480 chr2 46073646 46073687 + 0 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -223736 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 18270 chr20 54228957 54229067 + 0 NA Intergenic Intergenic 21049 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 8201 chr13 44710721 44710825 + 0 NA Intergenic Intergenic 98857 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 6076 chr11 111879125 111879280 + 0 NA promoter-TSS (NM_022761) promoter-TSS (NM_022761) -22 NM_001330371 64776 Hs.17546 NM_022761 ENSG00000137720 C11orf1 - chromosome 11 open reading frame 1 protein-coding 21468 chr4 76704189 76704339 + 0 NA intron (NM_020859, intron 2 of 10) L2a|LINE|L2 128713 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 19599 chr3 58433807 58433880 + 0 NA promoter-TSS (NR_033384) promoter-TSS (NR_033384) -4 NR_033384 5162 Hs.161357 NM_000925 ENSG00000168291 PDHB PDHBD|PDHE1-B|PHE1B pyruvate dehydrogenase (lipoamide) beta protein-coding 19583 chr3 57597532 57597723 + 0 NA promoter-TSS (NM_001660) promoter-TSS (NM_001660) -139 NM_001660 378 Hs.652183 NM_001660 ENSG00000168374 ARF4 ARF2 ADP ribosylation factor 4 protein-coding 23157 chr5 127875640 127875774 + 0 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 172318 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 18827 chr22 33921159 33921215 + 0 NA promoter-TSS (NM_133642) promoter-TSS (NM_133642) -759 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 10586 chr15 83447296 83447410 + 0 NA non-coding (NR_136712, exon 1 of 11) non-coding (NR_136712, exon 1 of 11) 125 NM_001324185 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 8993 chr14 51534812 51534916 + 0 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 45743 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 24991 chr6 108732624 108732728 + 0 NA Intergenic Intergenic -18978 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 13954 chr19 4540018 4540068 + 0 NA promoter-TSS (NM_052972) promoter-TSS (NM_052972) -19 NM_052972 116844 Hs.655559 NM_052972 ENSG00000171236 LRG1 HMFT1766|LRG leucine rich alpha-2-glycoprotein 1 protein-coding 29235 chr9 73143968 73144061 + 0 NA Intergenic Intergenic -7717 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 26234 chr7 48085059 48085227 + 0 NA Intergenic Intergenic -3460 NM_001287426 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 8008 chr13 26914967 26915047 + 0 NA Intergenic Intergenic -154222 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 30201 chr9 128818380 128818495 + 0 NA promoter-TSS (NM_004435) promoter-TSS (NM_004435) -63 NM_004435 2021 Hs.745161 NM_004435 ENSG00000167136 ENDOG - endonuclease G protein-coding 22186 chr5 7742259 7742358 + 0 NA intron (NM_020546, intron 14 of 24) intron (NM_020546, intron 14 of 24) 109182 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 3200 chr10 3898918 3899059 + 0 NA Intergenic Intergenic 65038 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 14925 chr2 3536455 3536543 + 0 NA Intergenic MER31A|LTR|ERV1 -16920 NM_018269 55256 Hs.502773 NM_018269 ENSG00000182551 ADI1 APL1|ARD|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD acireductone dioxygenase 1 protein-coding 5443 chr11 64810614 64810733 + 0 NA promoter-TSS (NM_130802) promoter-TSS (NM_130802) 43 NM_000244 4221 Hs.423348 NM_000244 ENSG00000133895 MEN1 MEAI|SCG2 menin 1 protein-coding 5536 chr11 66843336 66843500 + 0 NA promoter-TSS (NM_005133) promoter-TSS (NM_005133) 6 NM_005133 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 24191 chr6 24448953 24449073 + 0 NA intron (NM_001503, intron 15 of 24) L2c|LINE|L2 40609 NM_001503 2822 Hs.533291 NM_001503 ENSG00000112293 GPLD1 GPIPLD|GPIPLDM|PIGPLD|PIGPLD1|PLD glycosylphosphatidylinositol specific phospholipase D1 protein-coding 22880 chr5 91380951 91381143 + 0 NA promoter-TSS (NM_001329670) promoter-TSS (NM_001329670) 700 NR_027435 100129716 Hs.116364 NR_027435 ENSG00000281357 ARRDC3-AS1 - ARRDC3 antisense RNA 1 ncRNA 18296 chr20 56636781 56636885 + 0 NA intron (NM_003222, intron 6 of 6) intron (NM_003222, intron 6 of 6) 7531 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 11592 chr16 71462164 71462320 + 0 NA promoter-TSS (NM_145911) promoter-TSS (NM_145911) 10 NM_001304494 7571 Hs.656643 NM_145911 ENSG00000167377 ZNF23 KOX16|ZNF359|ZNF612|Zfp612 zinc finger protein 23 protein-coding 2710 chr1 218480827 218480973 + 0 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 38274 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 1084 chr1 67836901 67837035 + 0 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -3496 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 6824 chr12 31215568 31215690 + 0 NA Intergenic L1PA13|LINE|L1 -108687 NR_026806 79857 Hs.534485 NM_024799 ENSG00000177340 FLJ13224 - uncharacterized LOC79857 ncRNA 11691 chr16 79600799 79600903 + 0 NA promoter-TSS (NM_005360) promoter-TSS (NM_005360) -126 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 5324 chr11 59858164 59858325 + 0 NA intron (NM_001062, intron 5 of 8) MER44B|DNA|TcMar-Tigger 8324 NM_001062 6947 Hs.2012 NM_001062 ENSG00000134827 TCN1 HC|TC-1|TC1|TCI transcobalamin 1 protein-coding 11831 chr16 88332269 88332373 + 0 NA Intergenic Intergenic -95150 NM_001127464 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 16875 chr2 196988018 196988181 + 0 NA 3' UTR (NM_001195144, exon 28 of 28) 3' UTR (NM_001195144, exon 28 of 28) -61368 NM_001321099 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 23362 chr5 140726116 140726220 + 0 NA promoter-TSS (NR_026705) promoter-TSS (NR_026705) 9 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 20911 chr3 189356087 189356191 + 0 NA Intergenic Intergenic -115545 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 29644 chr9 97399162 97399302 + 0 NA Intergenic Intergenic -2541 NR_026847 286359 Hs.132262 NM_182600 LOC286359 - uncharacterized LOC286359 ncRNA 29213 chr9 72443411 72443560 + 0 NA Intergenic Intergenic -78238 NM_006007 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 24224 chr6 26197314 26197418 + 0 NA intron (NM_003530, intron 1 of 1) intron (NM_003530, intron 1 of 1) 1927 NM_003530 8351 Hs.532144 NM_003530 ENSG00000197409 HIST1H3D H3/b|H3FB histone cluster 1 H3 family member d protein-coding 22958 chr5 102959176 102959273 + 0 NA intron (NM_001177306, intron 11 of 24) intron (NM_001177306, intron 11 of 24) 93401 NM_001177306 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 2937 chr1 231039267 231039371 + 0 NA intron (NM_198552, intron 1 of 1) CpG 930 NM_198552 375061 Hs.38516 NM_198552 ENSG00000182118 FAM89A C1orf153 family with sequence similarity 89 member A protein-coding 16543 chr2 160241959 160241991 + 0 NA Intergenic Intergenic 29920 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000115221 LOC100505984 - uncharacterized LOC100505984 ncRNA 2482 chr1 205478061 205478284 + 0 NA Intergenic L2a|LINE|L2 -22086 NR_103783 101669762 Hs.666219 NR_103783 BLACAT1 LINC00912|linc-UBC1|onco-lncRNA-30 bladder cancer associated transcript 1 (non-protein coding) ncRNA 22214 chr5 10551553 10551673 + 0 NA Intergenic Intergenic -12710 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 10820 chr15 101008476 101008580 + 0 NA intron (NM_024652, intron 6 of 33) CpG -89245 NR_135828 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 1935 chr1 161389871 161390024 + 0 NA Intergenic CpG -22064 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 17607 chr20 11267465 11267553 + 0 NA non-coding (NR_038972, exon 2 of 2) non-coding (NR_038972, exon 2 of 2) 5874 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 14520 chr19 44259875 44259982 + 0 NA promoter-TSS (NM_001207005) promoter-TSS (NM_001207005) 14 NM_181756 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 26046 chr7 35800955 35801059 + 0 NA promoter-TSS (NR_120511) promoter-TSS (NR_120511) 21 NM_001011553 989 Hs.191346 NM_001788 ENSG00000122545 SEPT7 CDC10|CDC3|NBLA02942|SEPT7A septin 7 protein-coding 4046 chr10 89251951 89252103 + 0 NA promoter-TSS (NM_001127605) promoter-TSS (NM_001127605) 12 NM_001288979 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 11990 chr17 5486379 5486410 + 0 NA promoter-TSS (NM_001304777) promoter-TSS (NM_001304777) 20 NM_001258220 79003 Hs.267194 NM_024039 ENSG00000167842 MIS12 2510025F08Rik|KNTC2AP|MTW1|hMis12 MIS12, kinetochore complex component protein-coding 8128 chr13 38367424 38367528 + 0 NA Intergenic Intergenic 17705 NM_001286703 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20 ubiquitin fold modifier 1 protein-coding 9240 chr14 67187347 67187451 + 0 NA Intergenic L2c|LINE|L2 -1994 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 4567 chr10 125045856 125046036 + 0 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -13076 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 26449 chr7 76297565 76297708 + 0 NA Intergenic Intergenic -4922 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 13598 chr18 54023549 54023711 + 0 NA Intergenic Intergenic 198782 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 18971 chr22 42269689 42269840 + 0 NA promoter-TSS (NR_036498) promoter-TSS (NR_036498) 11 NR_036498 388906 Hs.730075 NR_036498 ENSG00000182057 OGFRP1 - opioid growth factor receptor pseudogene 1 pseudo 27709 chr8 38386395 38386527 + 0 NA promoter-TSS (NM_001286821) promoter-TSS (NM_001286821) 20 NM_001286787 137994 Hs.696457 NM_144652 ENSG00000165046 LETM2 - leucine zipper and EF-hand containing transmembrane protein 2 protein-coding 24491 chr6 37257605 37257776 + 0 NA promoter-TSS (NM_145316) promoter-TSS (NM_145316) -14 NM_017772 55633 Hs.731702 NM_017772 ENSG00000065491 TBC1D22B C6orf197 TBC1 domain family member 22B protein-coding 20146 chr3 130746790 130746947 + 0 NA promoter-TSS (NM_014602) promoter-TSS (NM_014602) -16 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 11404 chr16 56650002 56650033 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger -1882 NM_005947 4490 Hs.656629 NM_005947 ENSG00000169688 MT1B MT-1B|MT-IB|MT1|MT1Q|MTP metallothionein 1B protein-coding 2910 chr1 229093681 229093835 + 0 NA Intergenic MER4D0|LTR|ERV1 81043 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 19452 chr3 46935637 46935741 + 0 NA intron (NM_144716, intron 3 of 7) intron (NM_144716, intron 3 of 7) 40812 NR_102269 151903 Hs.631918 NM_144716 ENSG00000160799 CCDC12 - coiled-coil domain containing 12 protein-coding 1991 chr1 165630805 165630896 + 0 NA promoter-TSS (NM_004528) promoter-TSS (NM_004528) -23 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 26525 chr7 85114508 85114612 + 0 NA intron (NM_152754, intron 1 of 16) intron (NM_152754, intron 1 of 16) 7371 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 5855 chr11 93476985 93477065 + 0 NA Intergenic MIR|SINE|MIR 66355 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 29224 chr9 72828485 72828674 + 0 NA intron (NM_138691, intron 21 of 23) intron (NM_138691, intron 21 of 23) 45530 NR_121180 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 12764 chr17 57955341 57955445 + 0 NA promoter-TSS (NM_001271875) promoter-TSS (NM_001271875) -70 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 13852 chr19 1102541 1102695 + 0 NA Intergenic Intergenic -1308 NM_001039847 2879 Hs.433951 NM_002085 ENSG00000167468 GPX4 GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx glutathione peroxidase 4 protein-coding 13817 chr18 79203357 79203510 + 0 NA intron (NM_198531, intron 9 of 29) intron (NM_198531, intron 9 of 29) 134158 NM_198531 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 10866 chr16 1706126 1706162 + 0 NA promoter-TSS (NM_001040439) promoter-TSS (NM_001040439) -39 NM_015133 23162 Hs.207763 NM_015133 ENSG00000138834 MAPK8IP3 JIP-3|JIP3|JSAP1|SYD2|syd mitogen-activated protein kinase 8 interacting protein 3 protein-coding 25104 chr6 125153627 125153789 + 0 NA promoter-TSS (NM_001292026) promoter-TSS (NM_001292026) -21 NM_001003397 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 tumor protein D52-like 1 protein-coding 27195 chr7 148987463 148987597 + 0 NA promoter-TSS (NR_130107) promoter-TSS (NR_130107) 3 NR_130107 102723099 Hs.621982 NR_130107 ENSG00000281189 GHET1 lncRNA-GHET1 gastric carcinoma proliferation enhancing transcript 1 ncRNA 25617 chr7 6077322 6077463 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR -18163 NM_014413 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 7194 chr12 60345531 60345635 + 0 NA Intergenic AluJo|SINE|Alu 656246 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 8683 chr14 21308820 21308985 + 0 NA intron (NM_020366, intron 6 of 23) LTR9B|LTR|ERV1 20925 NM_020366 57096 Hs.126035 NM_020366 ENSG00000092200 RPGRIP1 CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d retinitis pigmentosa GTPase regulator interacting protein 1 protein-coding 29572 chr9 93451530 93451683 + 0 NA promoter-TSS (NM_001322224) promoter-TSS (NM_001322224) -2 NR_136234 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 7929 chr13 19782999 19783035 + 0 NA promoter-TSS (NM_001042414) promoter-TSS (NM_001042414) 2 NR_003272 55269 Hs.213198 NM_001042414 ENSG00000121390 PSPC1 PSP1 paraspeckle component 1 protein-coding 10368 chr15 70092089 70092193 + 0 NA intron (NM_001105192, intron 4 of 19) intron (NM_001105192, intron 4 of 19) 2644 NM_001282982 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 9197 chr14 64338831 64338938 + 0 NA promoter-TSS (NR_073496) promoter-TSS (NR_073496) -334 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2 estrogen receptor 2 protein-coding 31051 chrX 130060591 130060787 + 0 NA Intergenic CpG 49811 NM_001421 2000 Hs.271940 NM_001421 ENSG00000102034 ELF4 ELFR|MEF E74 like ETS transcription factor 4 protein-coding 19002 chr22 45435805 45435959 + 0 NA Intergenic Intergenic 22191 NM_015653 26150 Hs.475110 NM_015653 ENSG00000128408 RIBC2 C22orf11|TRIB RIB43A domain with coiled-coils 2 protein-coding 4447 chr10 118300449 118300553 + 0 NA Intergenic Intergenic 41826 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 10862 chr16 1612062 1612214 + 0 NA promoter-TSS (NM_014714) promoter-TSS (NM_014714) -30 NM_014714 9742 Hs.389438 NM_014714 ENSG00000187535 IFT140 MZSDS|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114 intraflagellar transport 140 protein-coding 4552 chr10 124092763 124092806 + 0 NA promoter-TSS (NM_014863) promoter-TSS (NM_014863) -360 NM_014863 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 5767 chr11 85628393 85628539 + 0 NA promoter-TSS (NM_001193537) promoter-TSS (NM_001193537) -107 NM_001256546 55863 Hs.525063 NM_018480 ENSG00000171204 TMEM126B HT007 transmembrane protein 126B protein-coding 22078 chr4 183444617 183444704 + 0 NA promoter-TSS (NM_001317343) promoter-TSS (NM_001317343) 69 NM_001317343 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 4930 chr11 16902271 16902375 + 0 NA intron (NM_001329631, intron 3 of 22) L1MB7|LINE|L1 112093 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 16799 chr2 188193375 188193479 + 0 NA intron (NR_126396, intron 1 of 2) MLT2F|LTR|ERVL 94264 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 28499 chr8 118850212 118850325 + 0 NA Intergenic Intergenic 101876 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 15278 chr2 29053308 29053370 + 0 NA Intergenic Intergenic 20922 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 C2orf71 RP54 chromosome 2 open reading frame 71 protein-coding 26398 chr7 73715825 73715870 + 0 NA intron (NM_004603, intron 1 of 9) intron (NM_004603, intron 1 of 9) 3840 NM_001165903 6804 Hs.647024 NM_004603 ENSG00000106089 STX1A HPC-1|P35-1|STX1|SYN1A syntaxin 1A protein-coding 15369 chr2 37803098 37803202 + 0 NA Intergenic LTR90A|LTR|LTR 26561 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 23479 chr5 149063226 149063345 + 0 NA promoter-TSS (NR_122044) promoter-TSS (NR_122044) -32 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 LOC255187 - uncharacterized LOC255187 ncRNA 7687 chr12 114628333 114628437 + 0 NA Intergenic Intergenic 55779 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 17221 chr2 227411375 227411479 + 0 NA Intergenic Intergenic -32121 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 22066 chr4 182143848 182143946 + 0 NA intron (NR_125905, intron 2 of 4) CpG-21660 618 NR_125905 90768 Hs.175465 NR_027107 LOC90768 - uncharacterized LOC90768 ncRNA 3100 chr1 243924383 243924487 + 0 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 7033 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LOC339529 - uncharacterized LOC339529 ncRNA 5263 chr11 57072716 57072846 + 0 NA Intergenic Intergenic 35247 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 7750 chr12 120317620 120317759 + 0 NA Intergenic CpG 10100 NM_000928 5319 Hs.992 NM_000928 ENSG00000170890 PLA2G1B PLA2|PLA2A|PPLA2 phospholipase A2 group IB protein-coding 23429 chr5 145921345 145921449 + 0 NA Intergenic Intergenic -15166 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 3787 chr10 64041289 64041393 + 0 NA Intergenic L1M3e|LINE|L1 -519266 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 1627 chr1 145281147 145281297 + 0 NA TTS (NR_104075) TTS (NR_104075) 106 NR_104075 101954266 NR_104075 ENSG00000207501 RNVU1-14 RNU1-37|vU1.14 RNA, variant U1 small nuclear 14 snRNA 11806 chr16 86809787 86809891 + 0 NA Intergenic Intergenic 87748 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LOC102724344 - uncharacterized LOC102724344 ncRNA 21752 chr4 120066869 120066990 + 0 NA promoter-TSS (NM_002358) promoter-TSS (NM_002358) -71 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 MAD2 mitotic arrest deficient-like 1 (yeast) protein-coding 6145 chr11 117970792 117970896 + 0 NA Intergenic Intergenic -15547 NR_026691 3587 Hs.504035 NM_001558 ENSG00000110324 IL10RA CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R interleukin 10 receptor subunit alpha protein-coding 700 chr1 40531545 40531649 + 0 NA promoter-TSS (NM_152373) promoter-TSS (NM_152373) 36 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 1019 chr1 64041932 64042036 + 0 NA intron (NM_005012, intron 2 of 8) MIRb|SINE|MIR 70221 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 25336 chr6 150600847 150600879 + 0 NA intron (NM_001329799, intron 1 of 15) CpG 998 NM_001329799 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 14506 chr19 43575620 43575771 + 0 NA promoter-TSS (NM_006297) promoter-TSS (NM_006297) -117 NM_006297 7515 Hs.98493 NM_006297 ENSG00000073050 XRCC1 RCC X-ray repair cross complementing 1 protein-coding 26676 chr7 99267619 99267723 + 0 NA Intergenic Intergenic -5630 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 11397 chr16 56451366 56451526 + 0 NA promoter-TSS (NM_007006) promoter-TSS (NM_007006) -34 NM_001324363 55239 Hs.231883 NM_018233 ENSG00000087263 OGFOD1 TPA1 2-oxoglutarate and iron dependent oxygenase domain containing 1 protein-coding 3369 chr10 18659202 18659445 + 0 NA promoter-TSS (NM_178815) promoter-TSS (NM_178815) -61 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 21328 chr4 47485243 47485347 + 0 NA promoter-TSS (NM_020453) promoter-TSS (NM_020453) -98 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 6274 chr11 124946787 124946891 + 0 NA Intergenic Intergenic -7282 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 19867 chr3 111695707 111695723 + 0 NA intron (NM_153268, intron 1 of 3) MER44D|DNA|TcMar-Tigger -18282 NR_046733 100874115 Hs.626740 NR_046733 PLCXD2-AS1 - PLCXD2 antisense RNA 1 ncRNA 15077 chr2 15730588 15730726 + 0 NA Intergenic Intergenic 39875 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 27334 chr8 6852615 6852718 + 0 NA Intergenic Intergenic -17022 NM_207411 389610 Hs.558840 NM_207411 ENSG00000275591 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK related 5 protein-coding 23544 chr5 151572836 151572940 + 0 NA Intergenic Intergenic -3944 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 27846 chr8 53945229 53945379 + 0 NA intron (NM_003702, intron 2 of 4) L1MB7|LINE|L1 64432 NM_003702 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G-protein signaling 20 protein-coding 17264 chr2 231411915 231412019 + 0 NA Intergenic Intergenic 16343 NM_145236 93010 Hs.299329 NM_145236 ENSG00000156966 B3GNT7 beta3GnT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding 16148 chr2 112584372 112584483 + 0 NA promoter-TSS (NM_001304353) promoter-TSS (NM_001304353) -10 NM_032309 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|MIC14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 17199 chr2 226063815 226063919 + 0 NA Intergenic L3b|LINE|CR1 -78927 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 14150 chr19 12890921 12891045 + 0 NA promoter-TSS (NR_102316) promoter-TSS (NR_102316) -146 NM_013976 2639 Hs.532699 NM_000159 ENSG00000105607 GCDH ACAD5|GCD glutaryl-CoA dehydrogenase protein-coding 30010 chr9 119556292 119556298 + 0 NA Intergenic Intergenic -186834 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 11061 chr16 15888704 15888818 + 0 NA promoter-TSS (NR_130755) promoter-TSS (NR_130755) -112 NR_130755 123811 Hs.514179 NM_144600 ENSG00000133393 FOPNL C16orf63|FOR20|PHSECRG2 FGFR1OP N-terminal like protein-coding 14795 chr19 55117677 55117881 + 0 NA promoter-TSS (NM_001271618) promoter-TSS (NM_001271618) -179 NM_001271618 54776 Hs.631579 NM_017607 ENSG00000125503 PPP1R12C LENG3|MBS85|p84|p85 protein phosphatase 1 regulatory subunit 12C protein-coding 606 chr1 35079372 35079380 + 0 NA promoter-TSS (NM_001289089) promoter-TSS (NM_001289089) 13 NM_001289090 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 20546 chr3 160399169 160399313 + 0 NA promoter-TSS (NM_001288753) promoter-TSS (NM_001288753) -63 NM_001288753 10051 Hs.58992 NM_005496 ENSG00000113810 SMC4 CAP-C|CAPC|SMC-4|SMC4L1 structural maintenance of chromosomes 4 protein-coding 11976 chr17 4849257 4849345 + 0 NA intron (NM_170663, intron 1 of 31) intron (NM_170663, intron 1 of 31) 15961 NM_153827 50488 Hs.443417 NM_015716 ENSG00000141503 MINK1 B55|MAP4K6|MINK|YSK2|ZC3 misshapen like kinase 1 protein-coding 25404 chr6 157381083 157381097 + 0 NA promoter-TSS (NM_024630) promoter-TSS (NM_024630) -435 NM_153746 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 432 chr1 26788133 26788179 + 0 NA promoter-TSS (NM_001202554) promoter-TSS (NM_001202554) -32 NM_001202554 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 25690 chr7 12647821 12647970 + 0 NA intron (NM_033128, intron 11 of 13) intron (NM_033128, intron 11 of 13) -38932 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 25183 chr6 134909244 134909265 + 0 NA Intergenic Intergenic 40868 NM_170771 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 27568 chr8 25766212 25766374 + 0 NA Intergenic Intergenic 278831 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 early B-cell factor 2 protein-coding 15061 chr2 14587256 14587360 + 0 NA Intergenic Intergenic -45375 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 13442 chr18 35972362 35972507 + 0 NA promoter-TSS (NM_001201474) promoter-TSS (NM_001201474) -191 NM_001201475 83608 Hs.37883 NM_031446 ENSG00000141428 C18orf21 HsT3108|PNAS-124|PNAS-131|XTP13 chromosome 18 open reading frame 21 protein-coding 5349 chr11 61688969 61689073 + 0 NA intron (NM_006133, intron 1 of 19) intron (NM_006133, intron 1 of 19) 8588 NM_006133 747 Hs.241564 NM_006133 ENSG00000134780 DAGLA C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR diacylglycerol lipase alpha protein-coding 23936 chr6 4942226 4942330 + 0 NA intron (NM_001143971, intron 4 of 6) intron (NM_001143971, intron 4 of 6) 52286 NM_001143971 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y-like protein-coding 8485 chr13 98577053 98577182 + 0 NA promoter-TSS (NM_001286649) promoter-TSS (NM_001286649) 34 NM_001286649 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 12558 chr17 44186829 44186963 + 0 NA promoter-TSS (NR_049729) promoter-TSS (NR_049729) -55 NM_001330235 79089 Hs.181391 NM_024107 ENSG00000168591 TMUB2 FP2653 transmembrane and ubiquitin like domain containing 2 protein-coding 30554 chrX 21927010 21927114 + 0 NA Intergenic Charlie5|DNA|hAT-Charlie -13511 NM_004595 6611 Hs.724874 NM_004595 ENSG00000102172 SMS MRSR|SPMSY|SRS|SpS spermine synthase protein-coding 10256 chr15 63157277 63157355 + 0 NA intron (NM_015920, intron 1 of 3) CpG 226 NM_015920 51065 Hs.108957 NM_015920 ENSG00000185088 RPS27L - ribosomal protein S27 like protein-coding 24647 chr6 47242600 47242704 + 0 NA intron (NM_014452, intron 4 of 5) intron (NM_014452, intron 4 of 5) 67295 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 27369 chr8 9338355 9338459 + 0 NA Intergenic Intergenic 13356 NR_040039 157273 Hs.650222 NR_040039 ENSG00000254235 LOC157273 - uncharacterized LOC157273 ncRNA 708 chr1 40898511 40898615 + 0 NA Intergenic MIR3|SINE|MIR -36217 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 22382 chr5 36573610 36573714 + 0 NA Intergenic Intergenic -32693 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 24570 chr6 42783467 42783597 + 0 NA promoter-TSS (NR_134654) promoter-TSS (NR_134654) 36 NR_134654 401261 Hs.656652 NM_001004322 LOC401261 - uncharacterized LOC401261 ncRNA 11146 chr16 23727927 23728031 + 0 NA Intergenic Intergenic -14479 NM_001308220 10595 Hs.592041 NM_033266 ENSG00000134398 ERN2 IRE1-BETA|IRE1b|IRE2p|hIRE2p endoplasmic reticulum to nucleus signaling 2 protein-coding 16392 chr2 138948148 138948206 + 0 NA Intergenic Intergenic 50853 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 13430 chr18 35039773 35039921 + 0 NA intron (NM_001143827, intron 2 of 7) intron (NM_001143827, intron 2 of 7) -1513 NM_014268 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 27751 chr8 42492378 42492474 + 0 NA intron (NM_006749, intron 1 of 10) intron (NM_006749, intron 1 of 10) 9034 NM_001257180 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 1656 chr1 147640935 147641039 + 0 NA Intergenic Intergenic 29525 NM_016361 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 24670 chr6 49532148 49532252 + 0 NA Intergenic Intergenic -18200 NM_001145652 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 14243 chr19 17337417 17337537 + 0 NA promoter-TSS (NM_001128855) promoter-TSS (NM_001128855) -40 NM_001128855 84705 Hs.334885 NM_032620 ENSG00000130299 GTPBP3 COXPD23|GTPBG3|MSS1|MTGP1|THDF1 GTP binding protein 3 (mitochondrial) protein-coding 9431 chr14 77320356 77320510 + 0 NA promoter-TSS (NM_001312660) promoter-TSS (NM_001312660) 449 NM_013382 29954 Hs.132989 NM_013382 ENSG00000009830 POMT2 LGMD2N|MDDGA2|MDDGB2|MDDGC2 protein O-mannosyltransferase 2 protein-coding 24752 chr6 63527774 63527878 + 0 NA Intergenic Intergenic -44186 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 27386 chr8 10839968 10840080 + 0 NA promoter-TSS (NM_017884) promoter-TSS (NM_017884) -2 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 4613 chr10 129971788 129971845 + 0 NA Intergenic CpG-3521 -7989 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|O/E-2|OE-2 early B-cell factor 3 protein-coding 17612 chr20 11543629 11543776 + 0 NA Intergenic Intergenic -270319 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 23947 chr6 6678448 6678457 + 0 NA Intergenic MIRb|SINE|MIR -55626 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 20271 chr3 139772700 139772804 + 0 NA Intergenic Intergenic -94702 NM_178177 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 11989 chr17 5468852 5469060 + 0 NA promoter-TSS (NR_135644) promoter-TSS (NR_135644) 104 NM_001199699 56919 Hs.250456 NM_020162 ENSG00000005100 DHX33 DDX33 DEAH-box helicase 33 protein-coding 15728 chr2 68918582 68918686 + 0 NA Intergenic Intergenic 34336 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 12081 chr17 8300776 8300870 + 0 NA Intergenic Intergenic -5480 NM_001320871 399512 Hs.118918 NM_201520 ENSG00000125434 SLC25A35 - solute carrier family 25 member 35 protein-coding 8457 chr13 96053391 96053595 + 0 NA promoter-TSS (NM_020121) promoter-TSS (NM_020121) -11 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 27666 chr8 33513511 33513615 + 0 NA promoter-TSS (NM_001102401) promoter-TSS (NM_001102401) 88 NR_003041 692084 NR_003041 ENSG00000239039 SNORD13 RNU13|SNORD13A|U13 small nucleolar RNA, C/D box 13 snoRNA 20763 chr3 181913457 181913589 + 0 NA Intergenic Intergenic -38841 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 23068 chr5 115941176 115941214 + 0 NA Intergenic Intergenic -21259 NM_173800 206338 Hs.98288 NM_173800 ENSG00000172901 LVRN APQ|AQPEP|TAQPEP laeverin protein-coding 5165 chr11 35927825 35927965 + 0 NA Intergenic Intergenic -16086 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 23828 chr5 179818985 179819132 + 0 NA intron (NM_001142299, intron 2 of 8) intron (NM_001142299, intron 2 of 8) -1784 NM_003900 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 25766 chr7 17674250 17674456 + 0 NA Intergenic LTR16B2|LTR|ERVL -115444 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 9206 chr14 64698982 64699169 + 0 NA Intergenic Intergenic -5333 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 30856 chrX 80216298 80216368 + 0 NA Intergenic MSTB|LTR|ERVL-MaLR 118985 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 28468 chr8 117398829 117398933 + 0 NA Intergenic Intergenic -121832 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 20989 chr3 193135058 193135151 + 0 NA Intergenic Intergenic -106024 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 HRASLS A-C1|H-REV107|HRASLS1|HRSL1|HSD28 HRAS like suppressor protein-coding 21240 chr4 22500298 22500426 + 0 NA intron (NM_145290, intron 1 of 18) MIR|SINE|MIR 15692 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 17226 chr2 227818279 227818416 + 0 NA TTS (NM_001130046) TTS (NM_001130046) 4505 NM_001130046 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 27984 chr8 67746374 67746478 + 0 NA promoter-TSS (NM_020361) promoter-TSS (NM_020361) -41 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 2099 chr1 175197723 175197854 + 0 NA Intergenic Intergenic -4695 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 9504 chr14 88166741 88166845 + 0 NA Intergenic Intergenic 104118 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 25194 chr6 136610341 136610491 + 0 NA intron (NM_005923, intron 18 of 29) intron (NM_005923, intron 18 of 29) -18698 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 23055 chr5 115419965 115420111 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -123277 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 2988 chr1 234599830 234600000 + 0 NA Intergenic CpG 9610 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 6181 chr11 119018688 119018718 + 0 NA promoter-TSS (NM_001028) promoter-TSS (NM_001028) 234 NM_001318494 51399 Hs.132760 NM_016146 ENSG00000196655 TRAPPC4 CGI-104|HSPC172|PTD009|SBDN|SYNBINDIN|TRS23 trafficking protein particle complex 4 protein-coding 14688 chr19 49468255 49468406 + 0 NA intron (NM_153329, intron 14 of 16) L1M5|LINE|L1 -5879 NM_001459 2323 Hs.428 NM_001459 ENSG00000090554 FLT3LG FL|FLT3L fms related tyrosine kinase 3 ligand protein-coding 17068 chr2 215435999 215436103 + 0 NA promoter-TSS (NM_002026) promoter-TSS (NM_002026) 17 NM_212478 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF fibronectin 1 protein-coding 4923 chr11 16738417 16738566 + 0 NA promoter-TSS (NM_014267) promoter-TSS (NM_014267) -110 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 19592 chr3 58049346 58049523 + 0 NA intron (NM_001457, intron 1 of 45) intron (NM_001457, intron 1 of 45) 41034 NM_001164317 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 27129 chr7 141702156 141702342 + 0 NA promoter-TSS (NM_001080392) promoter-TSS (NM_001080392) -96 NM_001080392 57189 Hs.521240 NM_001080392 ENSG00000257093 KIAA1147 LCHN|PRO2561 KIAA1147 protein-coding 21549 chr4 86892087 86892191 + 0 NA intron (NM_144645, intron 1 of 4) CpG 283 NM_144645 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 16250 chr2 121790398 121790502 + 0 NA Intergenic Intergenic 34905 NR_048557 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 11573 chr16 70289474 70289608 + 0 NA promoter-TSS (NM_001257174) promoter-TSS (NM_001257174) -32 NM_001605 16 Hs.315137 NM_001605 ENSG00000090861 AARS CMT2N|EIEE29 alanyl-tRNA synthetase protein-coding 24579 chr6 43053858 43053995 + 0 NA promoter-TSS (NM_001168370) promoter-TSS (NM_001168370) 19 NM_001168370 9820 Hs.520136 NM_014780 ENSG00000044090 CUL7 3M1|CUL-7|KIAA0076|dJ20C7.5 cullin 7 protein-coding 17664 chr20 14986044 14986123 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) -56565 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 8267 chr13 49792689 49792816 + 0 NA 5' UTR (NM_002267, exon 1 of 17) 5' UTR (NM_002267, exon 1 of 17) 169 NM_002267 3839 Hs.527919 NM_002267 ENSG00000102753 KPNA3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 karyopherin subunit alpha 3 protein-coding 1901 chr1 159910500 159910628 + 0 NA Intergenic Intergenic -10448 NM_012337 25790 Hs.647705 NM_012337 ENSG00000213085 CFAP45 CCDC19|NESG1 cilia and flagella associated protein 45 protein-coding 6966 chr12 49130258 49130386 + 0 NA intron (NM_006082, intron 1 of 3) CpG 1199 NM_006082 10376 Hs.524390 NM_006082 ENSG00000123416 TUBA1B K-ALPHA-1 tubulin alpha 1b protein-coding 10578 chr15 82832821 82832925 + 0 NA intron (NM_001080435, intron 9 of 9) intron (NM_001080435, intron 9 of 9) 23245 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WAS protein homolog associated with actin, golgi membranes and microtubules protein-coding 22041 chr4 176319803 176319932 + 0 NA promoter-TSS (NM_021928) promoter-TSS (NM_021928) -72 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 359 chr1 23778249 23778353 + 0 NA promoter-TSS (NM_020362) promoter-TSS (NM_020362) -4 NR_038280 100506963 Hs.592549 NR_038280 ENSG00000236810 ELOA-AS1 TCEB3-AS1 ELOA antisense RNA 1 ncRNA 21124 chr4 2937351 2937507 + 0 NA TTS (NM_001291978) TTS (NM_001291978) 1883 NR_015453 317648 Hs.398178 NR_015453 ENSG00000249673 NOP14-AS1 C4orf10|RES4-24 NOP14 antisense RNA 1 ncRNA 2608 chr1 211579224 211579369 + 0 NA promoter-TSS (NM_021194) promoter-TSS (NM_021194) -539 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 2614 chr1 211698684 211698788 + 0 NA Intergenic Intergenic -23106 NM_001204182 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 27063 chr7 135557832 135557936 + 0 NA promoter-TSS (NM_015135) promoter-TSS (NM_015135) -30 NM_015135 23165 Hs.743250 NM_015135 ENSG00000155561 NUP205 C7orf14|NPHS13 nucleoporin 205 protein-coding 30234 chr9 129626081 129626235 + 0 NA promoter-TSS (NM_001286803) promoter-TSS (NM_001286803) 5 NM_001286800 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 19407 chr3 42159935 42160024 + 0 NA promoter-TSS (NM_014965) promoter-TSS (NM_014965) -190 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 MILT1|OIP106 trafficking kinesin protein 1 protein-coding 3694 chr10 52894082 52894134 + 0 NA Intergenic L2a|LINE|L2 -122408 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 23514 chr5 150449759 150449863 + 0 NA promoter-TSS (NM_005617) promoter-TSS (NM_005617) -55 NM_001025071 6208 Hs.744846 NM_005617 ENSG00000164587 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 28838 chr8 144423359 144423495 + 0 NA TTS (NM_016208) TTS (NM_016208) 5136 NM_016208 51160 Hs.418175 NM_016208 ENSG00000160948 VPS28 - VPS28, ESCRT-I subunit protein-coding 16207 chr2 119218492 119218678 + 0 NA Intergenic Intergenic -5223 NM_001008410 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 13205 chr18 712670 712730 + 0 NA promoter-TSS (NM_202758) promoter-TSS (NM_202758) -36 NM_001318760 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 RTS|TYMSAS enolase superfamily member 1 protein-coding 22674 chr5 68683828 68683932 + 0 NA Intergenic Intergenic 346047 NR_130778 101928885 Hs.630474 NR_130778 LOC101928885 - uncharacterized LOC101928885 ncRNA 28892 chr9 4662197 4662389 + 0 NA promoter-TSS (NM_203453) promoter-TSS (NM_203453) -1 NM_203453 403313 Hs.107510 NM_203453 ENSG00000205808 PLPP6 PDP1|PPAPDC2|PSDP|bA6J24.6 phospholipid phosphatase 6 protein-coding 142 chr1 9878176 9878318 + 0 NA intron (NM_001012329, intron 1 of 4) intron (NM_001012329, intron 1 of 4) 32011 NM_020248 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 23507 chr5 150295314 150295388 + 0 NA TTS (NM_001012301) TTS (NM_001012301) -5511 NM_171825 815 Hs.743976 NM_015981 ENSG00000070808 CAMK2A CAMKA calcium/calmodulin dependent protein kinase II alpha protein-coding 20424 chr3 152331211 152331343 + 0 NA intron (NM_207297, intron 1 of 7) intron (NM_207297, intron 1 of 7) 9713 NR_132656 645843 Hs.632562 NM_001123228 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 9007 chr14 52458032 52458136 + 0 NA intron (NM_020784, intron 16 of 20) Charlie29a|DNA|hAT-Charlie 94499 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 5392 chr11 62841558 62841559 + 0 NA Intergenic Intergenic -1402 NM_018093 54663 Hs.654620 NM_018093 ENSG00000133316 WDR74 - WD repeat domain 74 protein-coding 22185 chr5 7147075 7147179 + 0 NA Intergenic Intergenic 122227 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 22057 chr4 179110517 179110621 + 0 NA Intergenic MER77B|LTR|ERVL -1202633 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 4491 chr10 119892561 119892735 + 0 NA promoter-TSS (NM_007190) promoter-TSS (NM_007190) 75 NR_037771 11196 Hs.435004 NM_007190 ENSG00000107651 SEC23IP MSTP053|P125|P125A SEC23 interacting protein protein-coding 20502 chr3 157274971 157275075 + 0 NA intron (NM_001167911, intron 11 of 12) intron (NM_001167911, intron 11 of 12) -114263 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 14965 chr2 9386728 9386846 + 0 NA intron (NM_003887, intron 21 of 27) MIR3|SINE|MIR 35873 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 27658 chr8 32331680 32331784 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -109014 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 12447 chr17 40013799 40013950 + 0 NA Intergenic Intergenic -1487 NR_033662 1440 Hs.2233 NM_000759 ENSG00000108342 CSF3 C17orf33|CSF3OS|GCSF colony stimulating factor 3 protein-coding 17182 chr2 224147392 224147413 + 0 NA Intergenic Intergenic -108083 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 25375 chr6 154555116 154555220 + 0 NA Intergenic Intergenic -44549 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 MAGI1 CNKSR family member 3 protein-coding 5795 chr11 86302119 86302257 + 0 NA promoter-TSS (NM_016401) promoter-TSS (NM_016401) -23 NR_024597 51501 Hs.283322 NM_016401 ENSG00000149196 HIKESHI C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10 Hikeshi, heat shock protein nuclear import factor protein-coding 17953 chr20 36773851 36773959 + 0 NA promoter-TSS (NM_001145316) promoter-TSS (NM_001145316) -78 NM_001145318 79980 Hs.632268 NM_024918 ENSG00000149636 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1 homolog, MIS12 kinetochore complex component protein-coding 15376 chr2 38377277 38377417 + 0 NA promoter-TSS (NM_022374) promoter-TSS (NM_022374) 76 NM_022374 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 13132 chr17 81419431 81419511 + 0 NA intron (NM_001291324, intron 1 of 27) intron (NM_001291324, intron 1 of 27) -18693 NR_039894 100616294 NR_039894 ENSG00000266392 MIR4740 - microRNA 4740 ncRNA 3665 chr10 49539109 49539198 + 0 NA promoter-TSS (NM_001277058) promoter-TSS (NM_001277058) -30 NM_000124 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 12935 chr17 71970408 71970512 + 0 NA Intergenic L2a|LINE|L2 55519 NR_110876 102723505 Hs.547482 NR_110876 ENSG00000228639 LINC02095 - long intergenic non-protein coding RNA 2095 ncRNA 7054 chr12 53220952 53221034 + 0 NA promoter-TSS (NM_001243732) promoter-TSS (NM_001243732) -580 NM_001042728 5916 Hs.1497 NM_000966 ENSG00000172819 RARG NR1B3|RARC retinoic acid receptor gamma protein-coding 12527 chr17 42744991 42745079 + 0 NA promoter-TSS (NM_001321082) promoter-TSS (NM_001321082) 61 NM_001321079 2145 Hs.194669 NM_001991 ENSG00000108799 EZH1 KMT6B enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 11981 chr17 4987023 4987167 + 0 NA 5' UTR (NM_001171167, exon 1 of 23) 5' UTR (NM_001171167, exon 1 of 23) 275 NM_001171167 23125 Hs.632242 NM_015099 ENSG00000108509 CAMTA2 - calmodulin binding transcription activator 2 protein-coding 4343 chr10 110410621 110410736 + 0 NA Intergenic Intergenic -87189 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 30534 chrX 17737270 17737274 + 0 NA promoter-TSS (NM_006746) promoter-TSS (NM_006746) -177 NM_006746 6322 Hs.109655 NM_006746 ENSG00000047634 SCML1 - sex comb on midleg-like 1 (Drosophila) protein-coding 26346 chr7 66250885 66250989 + 0 NA intron (NM_003596, intron 2 of 5) MER44B|DNA|TcMar-Tigger 45665 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 7041 chr12 52906485 52906589 + 0 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) -1453 NM_002273 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 14685 chr19 49442925 49443029 + 0 NA Intergenic CpG -1426 NM_020309 57030 Hs.375616 NM_020309 ENSG00000104888 SLC17A7 BNPI|VGLUT1 solute carrier family 17 member 7 protein-coding 15058 chr2 14517891 14517995 + 0 NA Intergenic MER30|DNA|hAT-Charlie -114740 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 14417 chr19 38403074 38403152 + 0 NA promoter-TSS (NM_174905) promoter-TSS (NM_174905) -22 NM_174905 147965 Hs.355162 NM_174905 ENSG00000130244 FAM98C - family with sequence similarity 98 member C protein-coding 659 chr1 38046806 38046872 + 0 NA promoter-TSS (NM_002699) promoter-TSS (NM_002699) -61 NM_002699 5453 Hs.1837 NM_002699 ENSG00000185668 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 7978 chr13 24348879 24348985 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 17482 NR_131903 100861547 Hs.585625 NR_131903 ENSG00000261498 LINC00566 - long intergenic non-protein coding RNA 566 ncRNA 13378 chr18 30106562 30106666 + 0 NA Intergenic MIRb|SINE|MIR -192296 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 11333 chr16 50806553 50806703 + 0 NA Intergenic Intergenic 64323 NR_130462 100422972 NR_130462 ENSG00000264947 MIR3181 - microRNA 3181 ncRNA 14958 chr2 9178428 9178525 + 0 NA Intergenic MER4B|LTR|ERV1 -28289 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13970 chr19 4968677 4968887 + 0 NA promoter-TSS (NM_015015) promoter-TSS (NM_015015) -331 NM_015015 23030 Hs.654816 NM_015015 ENSG00000127663 KDM4B JMJD2B|TDRD14B lysine demethylase 4B protein-coding 15318 chr2 32039766 32039916 + 0 NA promoter-TSS (NM_001321210) promoter-TSS (NM_001321210) -6 NR_135587 84661 Hs.531788 NM_032574 ENSG00000162961 DPY30 Cps25|HDPY-30|Saf19 dpy-30, histone methyltransferase complex regulatory subunit protein-coding 26430 chr7 74658524 74658682 + 0 NA intron (NM_001163636, intron 1 of 33) CpG 938 NM_001163636 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 3372 chr10 21174110 21174189 + 0 NA promoter-TSS (NR_046284) promoter-TSS (NR_046284) 38 NM_213569 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 9386 chr14 75176924 75177060 + 0 NA promoter-TSS (NM_006827) promoter-TSS (NM_006827) -346 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 22787 chr5 80408511 80408541 + 0 NA intron (NM_014733, intron 1 of 17) CpG 513 NM_001284237 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 128 chr1 9234879 9234932 + 0 NA 5' UTR (NM_004285, exon 1 of 5) 5' UTR (NM_004285, exon 1 of 5) 101 NM_004285 9563 Hs.463511 NM_004285 ENSG00000049239 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase protein-coding 26531 chr7 85489721 85489805 + 0 NA TTS (NR_134240) TTS (NR_134240) 68641 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 8724 chr14 23115209 23115313 + 0 NA Intergenic Intergenic 4350 NM_001805 1053 Hs.558308 NM_001805 ENSG00000092067 CEBPE C/EBP-epsilon|CRP1 CCAAT/enhancer binding protein epsilon protein-coding 10662 chr15 89334897 89335024 + 0 NA promoter-TSS (NM_001126131) promoter-TSS (NM_001126131) -165 NM_002693 5428 Hs.706868 NM_002693 ENSG00000140521 POLG MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE DNA polymerase gamma, catalytic subunit protein-coding 8848 chr14 34630132 34630236 + 0 NA promoter-TSS (NM_152233) promoter-TSS (NM_152233) -24 NM_152233 58533 Hs.276523 NM_021249 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 20341 chr3 146313975 146314079 + 0 NA Intergenic AluSz|SINE|Alu -62848 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 23857 chr6 1039294 1039426 + 0 NA intron (NR_027116, intron 1 of 3) intron (NR_027116, intron 1 of 3) 61972 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 20359 chr3 149129444 149129548 + 0 NA promoter-TSS (NM_001308258) promoter-TSS (NM_001308258) -88 NM_001308258 84343 Hs.558314 NM_032383 ENSG00000163755 HPS3 BLOC2S1|SUTAL HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 protein-coding 27699 chr8 38105415 38105562 + 0 NA promoter-TSS (NM_001105214) promoter-TSS (NM_001105214) -5 NM_001282272 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like histone lysine methyltransferase complex subunit protein-coding 12365 chr17 35254474 35254578 + 0 NA intron (NM_001330183, intron 1 of 3) intron (NM_001330183, intron 1 of 3) 11459 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 16509 chr2 157784550 157784654 + 0 NA intron (NM_001347663, intron 3 of 10) intron (NM_001347663, intron 3 of 10) 53676 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 12932 chr17 71633626 71633730 + 0 NA Intergenic Intergenic 392301 NR_110876 102723505 Hs.547482 NR_110876 ENSG00000228639 LINC02095 - long intergenic non-protein coding RNA 2095 ncRNA 10516 chr15 79179178 79179282 + 0 NA Intergenic Intergenic -30558 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 5809 chr11 86932062 86932166 + 0 NA intron (NR_120592, intron 2 of 2) intron (NR_120592, intron 2 of 2) 23284 NM_012193 8322 Hs.591968 NM_012193 ENSG00000174804 FZD4 CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4 frizzled class receptor 4 protein-coding 14080 chr19 10543638 10543771 + 0 NA promoter-TSS (NM_001281504) promoter-TSS (NM_001281504) -190 NR_104025 84971 Hs.512799 NM_032885 ENSG00000130734 ATG4D APG4-D|APG4D|AUTL4 autophagy related 4D cysteine peptidase protein-coding 10389 chr15 71043532 71043623 + 0 NA intron (NM_017691, intron 15 of 15) intron (NM_017691, intron 15 of 15) 71923 NM_001102658 196993 Hs.646533 NM_001102658 ENSG00000225362 CT62 - cancer/testis antigen 62 protein-coding 17685 chr20 17569919 17570062 + 0 NA promoter-TSS (NM_001278608) promoter-TSS (NM_001278608) 36 NM_001011546 11034 Hs.304192 NM_006870 ENSG00000125868 DSTN ACTDP|ADF|HEL32|bA462D18.2 destrin, actin depolymerizing factor protein-coding 27891 chr8 58411283 58411469 + 0 NA 5' UTR (NM_001077619, exon 1 of 8) 5' UTR (NM_001077619, exon 1 of 8) 112 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 27604 chr8 27673284 27673421 + 0 NA TTS (NM_016240) TTS (NM_016240) -28325 NR_037417 100500858 NR_037417 ENSG00000279302 MIR3622A mir-3622a microRNA 3622a ncRNA 28932 chr9 14062924 14063028 + 0 NA Intergenic Intergenic 117826 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 11569 chr16 70065904 70066056 + 0 NA promoter-TSS (NR_003610) promoter-TSS (NR_003610) -32 NR_003610 283970 Hs.513695 NM_199134 ENSG00000196696 PDXDC2P NPIP|PDXDC2 pyridoxal dependent decarboxylase domain containing 2, pseudogene pseudo 8857 chr14 35160152 35160256 + 0 NA intron (NM_001256681, intron 2 of 5) intron (NM_001256681, intron 2 of 5) 37652 NM_001256681 9692 Hs.458487 NM_014672 ENSG00000100890 KIAA0391 MRPP3|PRORP KIAA0391 protein-coding 30774 chrX 64205936 64206040 + 0 NA promoter-TSS (NM_152424) promoter-TSS (NM_152424) -244 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 20242 chr3 138417680 138417784 + 0 NA Intergenic Intergenic -16841 NR_136409 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 9941 chr15 40844183 40844287 + 0 NA promoter-TSS (NM_001032367) promoter-TSS (NM_001032367) 187 NM_181642 6692 Hs.233950 NM_003710 ENSG00000166145 SPINT1 HAI|HAI1|MANSC2 serine peptidase inhibitor, Kunitz type 1 protein-coding 7967 chr13 23753622 23753765 + 0 NA intron (NM_005932, intron 18 of 18) intron (NM_005932, intron 18 of 18) -135196 NM_001014442 542767 Hs.642624 NM_001014442 C1QTNF9B-AS1 PCOTH C1QTNF9B antisense RNA 1 protein-coding 27124 chr7 141014930 141015082 + 0 NA promoter-TSS (NM_053035) promoter-TSS (NM_053035) -25 NM_053035 51650 Hs.416207 NM_016071 ENSG00000090263 MRPS33 CGI-139|MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 2712 chr1 218496731 218496856 + 0 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 54167 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 1426 chr1 101833447 101833551 + 0 NA intron (NM_058170, intron 2 of 5) intron (NM_058170, intron 2 of 5) 13581 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 31025 chrX 120603935 120604097 + 0 NA promoter-TSS (NM_001137554) promoter-TSS (NM_001137554) 127 NM_014060 28985 Hs.102696 NM_014060 ENSG00000232119 MCTS1 MCT-1|MCT1 MCTS1, re-initiation and release factor protein-coding 29759 chr9 106588840 106588938 + 0 NA Intergenic Intergenic -12039 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 22943 chr5 98309937 98310041 + 0 NA Intergenic Intergenic -459306 NM_001012761 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule family member b protein-coding 7352 chr12 85076838 85076951 + 0 NA intron (NM_001079910, intron 11 of 26) MIR3|SINE|MIR 40573 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 7759 chr12 120620750 120620854 + 0 NA Intergenic Intergenic -19817 NM_001033677 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 26711 chr7 100673561 100673566 + 0 NA promoter-TSS (NM_005273) promoter-TSS (NM_005273) -177 NM_005273 2783 Hs.185172 NM_005273 ENSG00000172354 GNB2 - G protein subunit beta 2 protein-coding 19066 chr22_KI270733v1_random 138356 138510 + 0 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 8229 NR_003287 100008589 NR_003287 RNA28S5 RN28S1 RNA, 28S ribosomal 5 rRNA 17502 chr20 4148732 4148836 + 0 NA promoter-TSS (NM_001270691) promoter-TSS (NM_001270691) 5 NM_175841 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 1557 chr1 114780657 114780767 + 0 NA promoter-TSS (NM_001102396) promoter-TSS (NM_001102396) -25 NM_001102396 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 17971 chr20 37693883 37693992 + 0 NA promoter-TSS (NM_001281495) promoter-TSS (NM_001281495) -18 NM_001281495 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 18388 chr20 62623943 62624087 + 0 NA Intergenic Intergenic -18430 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 20790 chr3 183099471 183099673 + 0 NA promoter-TSS (NR_120639) promoter-TSS (NR_120639) 15 NR_120639 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 29692 chr9 99819990 99820048 + 0 NA promoter-TSS (NR_109802) promoter-TSS (NR_109802) -130 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 2056 chr1 169794885 169795043 + 0 NA promoter-TSS (NM_033418) promoter-TSS (NM_033418) 12 NM_001320199 92342 Hs.33922 NM_033418 ENSG00000171806 METTL18 AsTP2|C1orf156|HPM1 methyltransferase like 18 protein-coding 4987 chr11 19723649 19723677 + 0 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -8991 NR_015384 100126784 Hs.64341 NR_015384 LOC100126784 - uncharacterized LOC100126784 ncRNA 6883 chr12 41293029 41293157 + 0 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 104645 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 17557 chr20 6925897 6926001 + 0 NA Intergenic Intergenic 157851 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 17732 chr20 19993491 19993631 + 0 NA intron (NM_018993, intron 9 of 10) intron (NM_018993, intron 9 of 10) -23729 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 3428 chr10 23829698 23829812 + 0 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 135009 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 7426 chr12 92369761 92369865 + 0 NA Intergenic Intergenic -51718 NR_027932 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 protein-coding 23924 chr6 4317131 4317228 + 0 NA Intergenic Intergenic -110823 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 12841 chr17 63974676 63974780 + 0 NA Intergenic Intergenic -1810 NM_000334 6329 Hs.46038 NM_000334 ENSG00000007314 SCN4A CMS16|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1 sodium voltage-gated channel alpha subunit 4 protein-coding 22634 chr5 65624305 65624422 + 0 NA promoter-TSS (NM_001656) promoter-TSS (NM_001656) -3 NM_001656 373 Hs.792 NM_001656 ENSG00000113595 TRIM23 ARD1|ARFD1|RNF46 tripartite motif containing 23 protein-coding 11046 chr16 14563308 14563412 + 0 NA intron (NM_001242992, intron 17 of 22).2 intron (NM_001242992, intron 17 of 22).2 66911 NM_001134477 5073 Hs.253197 NM_002582 ENSG00000140694 PARN DAN|DKCB6|PFBMFT4 poly(A)-specific ribonuclease protein-coding 8451 chr13 95191874 95191973 + 0 NA intron (NM_001105515, intron 9 of 20) intron (NM_001105515, intron 9 of 20) 109523 NM_005845 10257 Hs.508423 NM_005845 ENSG00000125257 ABCC4 MOAT-B|MOATB|MRP4 ATP binding cassette subfamily C member 4 protein-coding 6490 chr12 5809207 5809311 + 0 NA intron (NM_001278596, intron 7 of 25) intron (NM_001278596, intron 7 of 25) 136000 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 27572 chr8 26185527 26185631 + 0 NA Intergenic L2a|LINE|L2 -105912 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2 regulatory subunit Balpha protein-coding 11907 chr17 2011858 2011962 + 0 NA intron (NM_178568, intron 1 of 1) intron (NM_178568, intron 1 of 1) -5806 NR_135642 105371485 Hs.655867 NR_135642 ENSG00000228133 LOC105371485 - uncharacterized LOC105371485 ncRNA 13139 chr17 81833086 81833190 + 0 NA TTS (NM_001007533) TTS (NM_001007533) 156 NM_001093767 348262 Hs.514632 NM_207368 ENSG00000225663 MCRIP1 FAM195B|GRAN2|MCRIP MAPK regulated corepressor interacting protein 1 protein-coding 5720 chr11 79412940 79412941 + 0 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 9286 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 30838 chrX 74451223 74451326 + 0 NA intron (NM_006517, intron 1 of 5) intron (NM_006517, intron 1 of 5) 29781 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 2037 chr1 168628964 168629068 + 0 NA Intergenic L2|LINE|L2 52543 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 5044 chr11 27363258 27363397 + 0 NA promoter-TSS (NM_030771) promoter-TSS (NM_030771) -79 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 30922 chrX 106611840 106611917 + 0 NA promoter-TSS (NM_001184782) promoter-TSS (NM_001184782) -52 NM_018015 55086 Hs.274267 NM_018015 ENSG00000147231 CXorf57 - chromosome X open reading frame 57 protein-coding 23002 chr5 109689865 109689974 + 0 NA 5' UTR (NM_002372, exon 1 of 22) 5' UTR (NM_002372, exon 1 of 22) 553 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 28101 chr8 81439361 81439465 + 0 NA TTS (NM_002677) TTS (NM_002677) 8071 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 3592 chr10 38402828 38402976 + 0 NA promoter-TSS (NR_027269) promoter-TSS (NR_027269) -50 NR_027269 285961 Hs.406568 NR_027269 SEPT7P9 CDC10L|SEPT7L|bA291L22.2 septin 7 pseudogene 9 pseudo 13640 chr18 58021683 58021787 + 0 NA Intergenic Intergenic -22643 NM_015277 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 1681 chr1 150487220 150487382 + 0 NA promoter-TSS (NR_073514) promoter-TSS (NR_073514) -63 NM_025150 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 28794 chr8 142788426 142788530 + 0 NA Intergenic Intergenic -1886 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 complex, locus D protein-coding 29917 chr9 113620559 113620663 + 0 NA Intergenic Intergenic 26457 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 26031 chr7 34341435 34341539 + 0 NA Intergenic Intergenic -316752 NM_001300934 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 22896 chr5 94228973 94229062 + 0 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -117318 NM_001163418 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21 family with sequence similarity 172 member A protein-coding 19826 chr3 107993108 107993289 + 0 NA Intergenic Intergenic 97890 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 27964 chr8 66113284 66113445 + 0 NA Intergenic CpG -13679 NM_184085 84675 Hs.85524 NM_033058 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 22571 chr5 57435792 57435921 + 0 NA Intergenic Intergenic 46953 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 14498 chr19 42396993 42397105 + 0 NA promoter-TSS (NR_073180) promoter-TSS (NR_073180) -79 NR_126041 101930071 Hs.567935 NR_126041 ENSG00000213904 LOC101930071 - uncharacterized LOC101930071 ncRNA 27097 chr7 139341229 139341383 + 0 NA 5' UTR (NM_001244584, exon 1 of 11) 5' UTR (NM_001244584, exon 1 of 11) 174 NM_001244584 100996928 Hs.731488 NM_001244584 ENSG00000269955 C7orf55-LUC7L2 - C7orf55-LUC7L2 readthrough protein-coding 10574 chr15 82714127 82714231 + 0 NA promoter-TSS (NR_034139) promoter-TSS (NR_034139) -186 NR_034139 338963 Hs.254464 NR_034139 ENSG00000228141 LOC338963 - epididymal protein pseudogene pseudo 395 chr1 25543559 25543709 + 0 NA promoter-TSS (NM_015627) promoter-TSS (NM_015627) 49 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 24458 chr6 36197242 36197373 + 0 NA intron (NM_015695, intron 1 of 12) CpG 534 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 13191 chr17_KI270729v1_random 13050 13188 + 0 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 31180 chrX 154379194 154379234 + 0 NA promoter-TSS (NM_000117) promoter-TSS (NM_000117) -23 NM_000117 2010 Hs.522823 NM_000117 ENSG00000102119 EMD EDMD|LEMD5|STA emerin protein-coding 23206 chr5 132365361 132365479 + 0 NA TTS (NR_037500) TTS (NR_037500) 179 NR_037500 100500865 NR_037500 ENSG00000263597 MIR3936 mir-3936 microRNA 3936 ncRNA 10172 chr15 57612028 57612162 + 0 NA intron (NR_104371, intron 2 of 16) intron (NR_104371, intron 2 of 16) 20191 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 30131 chr9 127068008 127068119 + 0 NA intron (NM_001190728, intron 6 of 16) intron (NM_001190728, intron 6 of 16) 54702 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 8910 chr14 37697520 37697624 + 0 NA intron (NM_001310135, intron 6 of 32) intron (NM_001310135, intron 6 of 32) 102373 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 5848 chr11 93020291 93020347 + 0 NA Intergenic LTR89|LTR|ERVL? 50696 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 24838 chr6 80527609 80527808 + 0 NA Intergenic Intergenic 421098 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 2295 chr1 196466826 196466930 + 0 NA intron (NM_198503, intron 7 of 27) intron (NM_198503, intron 7 of 27) 115603 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 22451 chr5 42583465 42583569 + 0 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 17653 NM_001242460 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 9016 chr14 52951742 52951846 + 0 NA promoter-TSS (NM_001134999) promoter-TSS (NM_001134999) -697 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 1550 chr1 114610884 114610913 + 0 NA intron (NM_198459, intron 6 of 17) intron (NM_198459, intron 6 of 17) -29254 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2, pre-mRNA processing factor protein-coding 24255 chr6 27251841 27252027 + 0 NA exon (NM_005865, exon 8 of 12) exon (NM_005865, exon 8 of 12) 4211 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP protease, serine 16 protein-coding 23080 chr5 119268101 119268209 + 0 NA promoter-TSS (NM_001077654) promoter-TSS (NM_001077654) -537 NM_001286817 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 12109 chr17 11997489 11997539 + 0 NA promoter-TSS (NM_001303282) promoter-TSS (NM_001303282) -4 NM_001303282 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 20249 chr3 138787128 138787232 + 0 NA Intergenic Intergenic -27821 NM_006219 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 18251 chr20 53738629 53738733 + 0 NA Intergenic Intergenic 130327 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 23326 chr5 139635829 139635933 + 0 NA Intergenic Intergenic -11418 NM_001317201 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 29725 chr9 104093945 104094074 + 0 NA promoter-TSS (NM_001042551) promoter-TSS (NM_001042551) -251 NM_001265602 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 18411 chr20 64062928 64063100 + 0 NA 5' UTR (NM_003195, exon 1 of 10) 5' UTR (NM_003195, exon 1 of 10) 357 NM_003195 6919 Hs.505004 NM_003195 ENSG00000171703 TCEA2 TFIIS transcription elongation factor A2 protein-coding 16210 chr2 119252990 119253094 + 0 NA intron (NM_182915, intron 4 of 5) intron (NM_182915, intron 4 of 5) -3971 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 2533 chr1 207963709 207963862 + 0 NA Intergenic CpG -52447 NM_001773 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 12411 chr17 37702740 37702844 + 0 NA intron (NM_001165923, intron 6 of 8) MER5A|DNA|hAT-Charlie 42286 NM_001304286 6928 Hs.191144 NM_000458 ENSG00000275410 HNF1B FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1 HNF1 homeobox B protein-coding 19209 chr3 15269630 15269754 + 0 NA intron (NM_001018009, intron 4 of 8) intron (NM_001018009, intron 4 of 8) 15508 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 27399 chr8 11867990 11868148 + 0 NA promoter-TSS (NM_001317237) promoter-TSS (NM_001317237) 81 NM_147783 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 19441 chr3 45167699 45167762 + 0 NA Intergenic LTR33|LTR|ERVL -21308 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 4434 chr10 117363187 117363291 + 0 NA intron (NM_173791, intron 1 of 4) intron (NM_173791, intron 1 of 4) 12228 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 28193 chr8 93371753 93371857 + 0 NA intron (NR_033858, intron 9 of 10) intron (NR_033858, intron 9 of 10) -204955 NM_001242668 389676 Hs.386711 NM_001242668 C8orf87 - chromosome 8 open reading frame 87 protein-coding 25915 chr7 26959024 26959128 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger -94333 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 13840 chr19 770447 770558 + 0 NA Intergenic Intergenic 19389 NR_135168 126353 Hs.439180 NM_173481 ENSG00000099812 MISP C19orf21|MISP1 mitotic spindle positioning protein-coding 10044 chr15 48143981 48144075 + 0 NA intron (NM_016132, intron 16 of 16) intron (NM_016132, intron 16 of 16) 23056 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 23119 chr5 124583856 124583928 + 0 NA Intergenic Intergenic -145372 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 18084 chr20 45336755 45336859 + 0 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 11617 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 6038 chr11 109892329 109892483 + 0 NA Intergenic Intergenic -200955 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 31189 chrX 154527215 154527249 + 0 NA Intergenic MIRc|SINE|MIR -10990 NM_001171133 60343 Hs.289108 NM_021806 ENSG00000071889 FAM3A 2.19|DLD|DXS560S|XAP-7 family with sequence similarity 3 member A protein-coding 18239 chr20 52946303 52946407 + 0 NA Intergenic Intergenic -26052 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 31211 chrY 11312497 11312651 + 0 NA Intergenic BSR/Beta|Satellite|Satellite 1109016 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 24692 chr6 52576961 52577065 + 0 NA promoter-TSS (NM_012288) promoter-TSS (NM_012288) 51 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 1908 chr1 160098601 160098705 + 0 NA promoter-TSS (NM_052868) promoter-TSS (NM_052868) 36 NM_001320247 93185 Hs.332012 NM_052868 ENSG00000162729 IGSF8 CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL immunoglobulin superfamily member 8 protein-coding 29560 chr9 92782041 92782195 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL -17317 NM_001003800 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|bA526D8.1 BICD cargo adaptor 2 protein-coding 23216 chr5 132466672 132466761 + 0 NA intron (NR_045116, intron 3 of 3) intron (NR_045116, intron 3 of 3) 24057 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 15327 chr2 32806990 32807094 + 0 NA intron (NM_017735, intron 16 of 19) L1ME3A|LINE|L1 -18401 NR_027098 285045 Hs.434660 NR_027098 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 4291 chr10 103908415 103908581 + 0 NA intron (NM_024928, intron 3 of 9) intron (NM_024928, intron 3 of 9) 9789 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1, CST complex subunit protein-coding 6480 chr12 5177856 5177960 + 0 NA Intergenic Intergenic 65243 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 10912 chr16 3003924 3004076 + 0 NA Intergenic CpG 5045 NR_110948 101929613 Hs.741644 NR_110947 LOC101929613 LA16c-380H5.3 uncharacterized LOC101929613 ncRNA 2792 chr1 223707298 223707460 + 0 NA intron (NM_001146068, intron 1 of 20) intron (NM_001146068, intron 1 of 20) -5038 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 19367 chr3 38649772 38649876 + 0 NA promoter-TSS (NM_001099404) promoter-TSS (NM_001099404) -151 NM_001160160 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 8082 chr13 32881975 32882095 + 0 NA intron (NR_047020, intron 3 of 4) intron (NR_047020, intron 3 of 4) 29617 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 19927 chr3 114552107 114552211 + 0 NA intron (NR_121662, intron 3 of 6) AluJr|SINE|Alu 72047 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 17092 chr2 217331685 217331771 + 0 NA intron (NR_026597, intron 8 of 12) intron (NR_026597, intron 8 of 12) 48995 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 19676 chr3 75785475 75785579 + 0 NA promoter-TSS (NM_001324026) promoter-TSS (NM_001324026) 56 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 X17|ZNF838 zinc finger protein 717 protein-coding 6748 chr12 25333915 25334050 + 0 NA Intergenic Intergenic -83051 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 11298 chr16 48127231 48127282 + 0 NA intron (NM_033226, intron 9 of 28) intron (NM_033226, intron 9 of 28) 19514 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 18035 chr20 41340752 41340909 + 0 NA promoter-TSS (NR_126051) promoter-TSS (NR_126051) -23 NR_126051 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 11518 chr16 68023211 68023339 + 0 NA 5' UTR (NM_017803, exon 1 of 17) 5' UTR (NM_017803, exon 1 of 17) 331 NM_001271763 54920 Hs.534460 NM_017803 ENSG00000167264 DUS2 DUS2L|SMM1|URLC8 dihydrouridine synthase 2 protein-coding 11168 chr16 27169699 27169707 + 0 NA Intergenic Intergenic -33783 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 25742 chr7 16753572 16753716 + 0 NA promoter-TSS (NM_014399) promoter-TSS (NM_014399) -82 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 16857 chr2 192559654 192559758 + 0 NA Intergenic MER41B|LTR|ERV1 -190139 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1, prostate-specific transcript (non-protein coding) ncRNA 6242 chr11 122676808 122676912 + 0 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 21170 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 7830 chr12 123383918 123383979 + 0 NA promoter-TSS (NM_001324504) promoter-TSS (NM_001324504) -168 NM_001324505 387893 Hs.443735 NM_020382 ENSG00000183955 KMT5A PR-Set7|SET07|SET8|SETD8 lysine methyltransferase 5A protein-coding 18690 chr22 23857691 23857839 + 0 NA promoter-TSS (NM_001024939) promoter-TSS (NM_001024939) -88 NM_001024939 66035 Hs.661910 NM_030807 ENSG00000133460 SLC2A11 GLUT10|GLUT11 solute carrier family 2 member 11 protein-coding 16591 chr2 164914227 164914312 + 0 NA intron (NM_173512, intron 7 of 9) MIRc|SINE|MIR 41256 NM_001199148 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 9731 chr14 103847515 103847741 + 0 NA promoter-TSS (NM_015316) promoter-TSS (NM_015316) -38 NM_015316 23368 Hs.709297 NM_015316 ENSG00000088808 PPP1R13B ASPP1|p53BP2-like|p85 protein phosphatase 1 regulatory subunit 13B protein-coding 15825 chr2 74421578 74421646 + 0 NA promoter-TSS (NM_001316764) promoter-TSS (NM_001316764) 18 NM_001316766 388963 Hs.445377 NM_001145054 ENSG00000159239 C2orf81 hCG40743 chromosome 2 open reading frame 81 protein-coding 19681 chr3 81947542 81947566 + 0 NA Intergenic MER72|LTR|ERV1 -185755 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 16912 chr2 200765794 200765898 + 0 NA intron (NR_135012, intron 21 of 30) MER21C|LTR|ERVL -30669 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LINC01792 - long intergenic non-protein coding RNA 1792 ncRNA 2665 chr1 214328948 214329024 + 0 NA intron (NM_020197, intron 7 of 11) intron (NM_020197, intron 7 of 11) 47764 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 5018 chr11 24496976 24497103 + 0 NA promoter-TSS (NM_001009909) promoter-TSS (NM_001009909) 69 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 29569 chr9 93223478 93223496 + 0 NA intron (NM_001282394, intron 1 of 29) intron (NM_001282394, intron 1 of 29) 38557 NM_001282394 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 4609 chr10 129467186 129467248 + 0 NA promoter-TSS (NM_002412) promoter-TSS (NM_002412) 33 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 14995 chr2 10493745 10493871 + 0 NA Intergenic Intergenic 44080 NR_110597 101929715 Hs.634550 NR_110597 LOC101929715 - uncharacterized LOC101929715 ncRNA 7272 chr12 75391062 75391173 + 0 NA promoter-TSS (NM_001286549) promoter-TSS (NM_001286549) 47 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLI pathogenesis related 1 like 2 protein-coding 26578 chr7 91850602 91850706 + 0 NA Intergenic L1MEg|LINE|L1 30066 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 23194 chr5 131635360 131635542 + 0 NA promoter-TSS (NM_001164386) promoter-TSS (NM_001164386) -215 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 22975 chr5 106455253 106455357 + 0 NA Intergenic Intergenic 555709 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 14903 chr2 740559 740713 + 0 NA Intergenic Intergenic -63197 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 23651 chr5 160508954 160509058 + 0 NA Intergenic Intergenic 23654 NR_029701 406938 NR_029701 ENSG00000253522 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 15141 chr2 20213145 20213275 + 0 NA intron (NM_001006946, intron 2 of 5) intron (NM_001006946, intron 2 of 5) 11956 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 13386 chr18 31207055 31207159 + 0 NA Intergenic Intergenic -44251 NM_004948 1823 Hs.567260 NM_004948 ENSG00000134765 DSC1 CDHF1|DG2/DG3 desmocollin 1 protein-coding 20975 chr3 192422725 192422868 + 0 NA intron (NM_004113, intron 2 of 5) MIR|SINE|MIR -13747 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 1269 chr1 89021871 89021975 + 0 NA intron (NM_001319181, intron 1 of 9) intron (NM_001319181, intron 1 of 9) 943 NM_001319179 2635 Hs.720167 NM_018284 ENSG00000117226 GBP3 - guanylate binding protein 3 protein-coding 24902 chr6 89080563 89080689 + 0 NA promoter-TSS (NM_006813) promoter-TSS (NM_006813) -84 NM_006813 10957 Hs.75969 NM_006813 ENSG00000146278 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline rich nuclear receptor coactivator 1 protein-coding 9593 chr14 94081181 94081361 + 0 NA promoter-TSS (NM_145249) promoter-TSS (NM_145249) -22 NM_145249 122509 Hs.19414 NM_145249 ENSG00000165948 IFI27L1 FAM14B|ISG12C interferon alpha inducible protein 27 like 1 protein-coding 25847 chr7 23014090 23014277 + 0 NA promoter-TSS (NM_032581) promoter-TSS (NM_032581) -32 NM_032581 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 22936 chr5 97183169 97183292 + 0 NA promoter-TSS (NM_018343) promoter-TSS (NM_018343) 71 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 12333 chr17 32621760 32621852 + 0 NA intron (NM_001303279, intron 20 of 21) MLT1A|LTR|ERVL-MaLR 134719 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 23419 chr5 143697122 143697156 + 0 NA Intergenic Intergenic 17279 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 19900 chr3 112801811 112801980 + 0 NA Intergenic L1ME3G|LINE|L1 44055 NM_001199215 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 17165 chr2 223263237 223263341 + 0 NA Intergenic Intergenic 211359 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 1671 chr1 150067666 150067842 + 0 NA promoter-TSS (NM_001279354) promoter-TSS (NM_001279354) 86 NM_001279354 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 4242 chr10 102056230 102056303 + 0 NA promoter-TSS (NM_024541) promoter-TSS (NM_024541) -91 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 C10orf76 - chromosome 10 open reading frame 76 protein-coding 21020 chr3 194593466 194593636 + 0 NA intron (NM_138399, intron 9 of 10) intron (NM_138399, intron 9 of 10) 9283 NR_047573 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 8476 chr13 97648452 97648498 + 0 NA Intergenic Intergenic 214254 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 830 chr1 46725366 46725512 + 0 NA Intergenic Intergenic -6375 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 30998 chrX 118743783 118743887 + 0 NA intron (NM_001560, intron 2 of 10) intron (NM_001560, intron 2 of 10) 16239 NM_001560 3597 Hs.496646 NM_001560 ENSG00000131724 IL13RA1 CD213A1|CT19|IL-13Ra|NR4 interleukin 13 receptor subunit alpha 1 protein-coding 18230 chr20 52191719 52191719 + 0 NA 5' UTR (NM_199427, exon 1 of 9) 5' UTR (NM_199427, exon 1 of 9) 266 NM_199426 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 28231 chr8 95114505 95114609 + 0 NA Intergenic Intergenic -19164 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 28698 chr8 131317557 131317652 + 0 NA Intergenic Intergenic -277015 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 22646 chr5 66144579 66144657 + 0 NA promoter-TSS (NM_139168) promoter-TSS (NM_139168) -217 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 15676 chr2 65056189 65056371 + 0 NA promoter-TSS (NM_001319100) promoter-TSS (NM_001319100) -81 NM_015147 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 12736 chr17 56833909 56834013 + 0 NA promoter-TSS (NM_001085430) promoter-TSS (NM_001085430) -66 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 30911 chrX 105017859 105017963 + 0 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 202782 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 17708 chr20 18879299 18879335 + 0 NA Intergenic L1PB1|LINE|L1 -49114 NM_001302818 100128496 Hs.664484 NM_001242671 C20orf78 dJ1068E13.1 chromosome 20 open reading frame 78 protein-coding 3940 chr10 77350766 77350919 + 0 NA promoter-TSS (NM_001322838) promoter-TSS (NM_001322838) -30 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 22546 chr5 55307626 55307769 + 0 NA promoter-TSS (NM_001345964) promoter-TSS (NM_001345964) 25 NR_144325 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 13667 chr18 59899767 59899881 + 0 NA promoter-TSS (NM_021127) promoter-TSS (NM_021127) -136 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 15103 chr2 17643283 17643387 + 0 NA intron (NM_003385, intron 2 of 3) intron (NM_003385, intron 2 of 3) 102795 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 16739 chr2 178514738 178514842 + 0 NA Intergenic Intergenic -8037 NR_038272 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 22617 chr5 61910829 61910835 + 0 NA Intergenic HERVL-int|LTR|ERVL -175134 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 9374 chr14 74648250 74648354 + 0 NA Intergenic Intergenic -35971 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 29010 chr9 27528356 27528498 + 0 NA intron (NM_024761, intron 1 of 3) CpG 1425 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 20441 chr3 153209797 153209901 + 0 NA Intergenic Intergenic 47637 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 11173 chr16 27268684 27268841 + 0 NA promoter-TSS (NM_145080) promoter-TSS (NM_145080) 30 NM_145080 197370 Hs.284295 NM_145080 ENSG00000169189 NSMCE1 NSE1 NSE1 homolog, SMC5-SMC6 complex component protein-coding 10345 chr15 68229584 68229605 + 0 NA 5' UTR (NM_017882, exon 1 of 7) 5' UTR (NM_017882, exon 1 of 7) 148 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf ceroid-lipofuscinosis, neuronal 6, late infantile, variant protein-coding 20636 chr3 170751686 170751782 + 0 NA intron (NR_135556, intron 5 of 5) intron (NR_135556, intron 5 of 5) 118522 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 15253 chr2 28250115 28250219 + 0 NA intron (NR_137440, intron 10 of 13) L2b|LINE|L2 -43206 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 9778 chr14_GL000225v1_random 140537 140641 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 7691 chr12 115354179 115354230 + 0 NA Intergenic Intergenic -670040 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 29949 chr9 115157390 115157494 + 0 NA intron (NM_017418, intron 1 of 7) intron (NM_017418, intron 1 of 7) 15624 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 24759 chr6 64035405 64035509 + 0 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 388931 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 26499 chr7 81618518 81618622 + 0 NA intron (NR_126026, intron 2 of 8) intron (NR_126026, intron 2 of 8) 7646 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 24889 chr6 86723855 86723959 + 0 NA Intergenic L2a|LINE|L2 -213399 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 11139 chr16 23453110 23453250 + 0 NA promoter-TSS (NM_153603) promoter-TSS (NM_153603) 11 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 22137 chr5 271508 271524 + 0 NA promoter-TSS (NM_001267558) promoter-TSS (NM_001267558) 8 NR_104613 102467073 Hs.368328 NR_104613 HRAT5 - heart tissue-associated transcript 5 ncRNA 28036 chr8 73950627 73950743 + 0 NA intron (NM_001204857, intron 3 of 3) L1MC5a|LINE|L1 21223 NM_001204862 6921 Hs.533437 NM_005648 ENSG00000154582 ELOC SIII|TCEB1 elongin C protein-coding 26636 chr7 96219496 96219590 + 0 NA TTS (NR_030322) TTS (NR_030322) 213 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 3533 chr10 32056327 32056480 + 0 NA promoter-TSS (NM_004521) promoter-TSS (NM_004521) 40 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 4856 chr11 13009186 13009346 + 0 NA promoter-TSS (NM_001080521) promoter-TSS (NM_001080521) -157 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 23527 chr5 150774251 150774355 + 0 NA Intergenic LTR37-int|LTR|ERV1 -3643 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 440 chr1 26960385 26960556 + 0 NA promoter-TSS (NM_152365) promoter-TSS (NM_152365) -60 NM_152365 126695 Hs.188881 NM_152365 ENSG00000175707 KDF1 C1orf172 keratinocyte differentiation factor 1 protein-coding 16854 chr2 192499470 192499574 + 0 NA Intergenic Intergenic -250323 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1, prostate-specific transcript (non-protein coding) ncRNA 11489 chr16 67109844 67109997 + 0 NA promoter-TSS (NM_001320542) promoter-TSS (NM_001320542) 27 NM_001320541 80262 Hs.513666 NM_025187 ENSG00000125149 C16orf70 C16orf6|LIN10|lin-10 chromosome 16 open reading frame 70 protein-coding 9881 chr15 37059212 37059300 + 0 NA intron (NM_170676, intron 7 of 11) intron (NM_170676, intron 7 of 11) 39105 NM_172315 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 29272 chr9 75890575 75890679 + 0 NA promoter-TSS (NM_006200) promoter-TSS (NM_006200) -17 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 25798 chr7 20215249 20215353 + 0 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 2089 NM_182762 346389 Hs.598388 NM_182762 ENSG00000183742 MACC1 7A5|SH3BP4L MACC1, MET transcriptional regulator protein-coding 20039 chr3 123066940 123067072 + 0 NA promoter-TSS (NM_006810) promoter-TSS (NM_006810) -3 NM_006810 10954 Hs.477352 NM_006810 ENSG00000065485 PDIA5 PDIR protein disulfide isomerase family A member 5 protein-coding 16140 chr2 112054343 112054447 + 0 NA promoter-TSS (NM_001329914) promoter-TSS (NM_001329914) -828 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 9716 chr14 103111489 103111625 + 0 NA TTS (NM_001077594) TTS (NM_001077594) 11352 NR_138038 105370683 Hs.252904 NR_138038 LINC00677 C14orf74 long intergenic non-protein coding RNA 677 ncRNA 11719 chr16 81444725 81444890 + 0 NA promoter-TSS (NM_198390) promoter-TSS (NM_198390) -363 NM_198390 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 10729 chr15 92900241 92900371 + 0 NA promoter-TSS (NM_001271) promoter-TSS (NM_001271) -15 NM_001271 1106 Hs.220864 NM_001271 ENSG00000173575 CHD2 EEOC chromodomain helicase DNA binding protein 2 protein-coding 25572 chr7 3301064 3301187 + 0 NA promoter-TSS (NM_152744) promoter-TSS (NM_152744) -323 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1898 chr1 159881987 159882107 + 0 NA intron (NM_012337, intron 7 of 11) intron (NM_012337, intron 7 of 11) 18032 NR_130464 100422852 NR_130464 ENSG00000266458 MIR4259 - microRNA 4259 ncRNA 12521 chr17 42529949 42530089 + 0 NA Intergenic AluSz|SINE|Alu -5914 NM_000263 4669 Hs.50727 NM_000263 ENSG00000108784 NAGLU CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD N-acetyl-alpha-glucosaminidase protein-coding 1044 chr1 65254387 65254491 + 0 NA Intergenic CpG -10255 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 4668 chr11 642742 642846 + 0 NA Intergenic Intergenic 5489 NM_000797 1815 Hs.99922 NM_000797 ENSG00000069696 DRD4 D4DR dopamine receptor D4 protein-coding 12994 chr17 75109872 75109907 + 0 NA promoter-TSS (NM_001304272) promoter-TSS (NM_001304272) -63 NM_001304272 79637 Hs.413047 NM_024585 ENSG00000125449 ARMC7 - armadillo repeat containing 7 protein-coding 29825 chr9 109144089 109144165 + 0 NA intron (NM_014334, intron 3 of 4) intron (NM_014334, intron 3 of 4) 23164 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 25782 chr7 18972753 18972774 + 0 NA intron (NM_178425, intron 23 of 24) intron (NM_178425, intron 23 of 24) 144909 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 19318 chr3 32685084 32685188 + 0 NA promoter-TSS (NM_001256741) promoter-TSS (NM_001256741) -9 NR_046352 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 30159 chr9 127804005 127804111 + 0 NA intron (NM_001018078, intron 1 of 14) intron (NM_001018078, intron 1 of 14) 877 NM_001018078 2356 Hs.335084 NM_004957 ENSG00000136877 FPGS - folylpolyglutamate synthase protein-coding 19014 chr22 45804971 45805142 + 0 NA intron (NM_013236, intron 9 of 11) L1MC5a|LINE|L1 44532 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 8258 chr13 49314052 49314156 + 0 NA intron (NM_001287337, intron 11 of 11) intron (NM_001287337, intron 11 of 11) 66193 NM_030911 81602 Hs.388220 NM_030911 ENSG00000102543 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 27828 chr8 52912768 52912872 + 0 NA Intergenic LTR33|LTR|ERVL -27088 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 17478 chr20 3204595 3204607 + 0 NA promoter-TSS (NM_023935) promoter-TSS (NM_023935) 96 NM_023935 65992 Hs.471975 NM_023935 ENSG00000198171 DDRGK1 C20orf116|UFBP1|dJ1187M17.3 DDRGK domain containing 1 protein-coding 26973 chr7 128343767 128343918 + 0 NA promoter-TSS (NM_001166135) promoter-TSS (NM_001166135) 66 NM_001166135 55131 Hs.274263 NM_018077 ENSG00000106344 RBM28 ANES RNA binding motif protein 28 protein-coding 467 chr1 27914588 27914728 + 0 NA exon (NM_001297558, exon 1 of 9) exon (NM_001297558, exon 1 of 9) 139 NM_001297558 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 26108 chr7 40977787 40977917 + 0 NA intron (NR_110831, intron 1 of 2) intron (NR_110831, intron 1 of 2) 2087 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 21841 chr4 140757015 140757068 + 0 NA promoter-TSS (NM_015130) promoter-TSS (NM_015130) -724 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 8001 chr13 26222275 26222393 + 0 NA promoter-TSS (NM_005977) promoter-TSS (NM_005977) 37 NM_183045 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 25267 chr6 144264340 144264444 + 0 NA Intergenic Intergenic -27345 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 21878 chr4 146522368 146522500 + 0 NA promoter-TSS (NM_001317816) promoter-TSS (NM_001317816) -463 NM_001317816 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7 solute carrier family 10 member 7 protein-coding 17300 chr2 233566762 233566866 + 0 NA Intergenic CpG -1224 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 17282 chr2 232378791 232378817 + 0 NA exon (NM_001632, exon 1 of 11) exon (NM_001632, exon 1 of 11) 270 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 11177 chr16 28193905 28194020 + 0 NA intron (NM_015171, intron 1 of 23) intron (NM_015171, intron 1 of 23) 17956 NM_001270940 23214 Hs.460468 NM_015171 ENSG00000169180 XPO6 EXP6|RANBP20 exportin 6 protein-coding 29082 chr9 35749146 35749229 + 0 NA promoter-TSS (NM_020944) promoter-TSS (NM_020944) 41 NM_020944 57704 Hs.443134 NM_020944 ENSG00000070610 GBA2 AD035|NLGase|SPG46 glucosylceramidase beta 2 protein-coding 9579 chr14 93103817 93103921 + 0 NA intron (NM_001142593, intron 2 of 10) intron (NM_001142593, intron 2 of 10) 12050 NM_001142593 3705 Hs.308122 NM_014216 ENSG00000100605 ITPK1 ITRPK1 inositol-tetrakisphosphate 1-kinase protein-coding 21814 chr4 138242327 138242466 + 0 NA promoter-TSS (NM_014331) promoter-TSS (NM_014331) -47 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 18446 chr21 28885068 28885172 + 0 NA intron (NM_182749, intron 1 of 4) CpG 253 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding 17578 chr20 10435181 10435340 + 0 NA promoter-TSS (NM_001009608) promoter-TSS (NM_001009608) -43 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 2919 chr1 229626027 229626186 + 0 NA promoter-TSS (NM_014409) promoter-TSS (NM_014409) -59 NM_014409 27097 Hs.270621 NM_014409 ENSG00000135801 TAF5L PAF65B TATA-box binding protein associated factor 5 like protein-coding 3248 chr10 6219077 6219210 + 0 NA intron (NM_001314063, intron 6 of 15) intron (NM_001314063, intron 6 of 15) 16266 NM_001323017 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 22718 chr5 73615277 73615341 + 0 NA Intergenic MER5B|DNA|hAT-Charlie -10849 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 19198 chr3 14432348 14432486 + 0 NA intron (NM_001134367, intron 2 of 14) intron (NM_001134367, intron 2 of 14) 29841 NM_001134368 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 6915 chr12 45273832 45273984 + 0 NA intron (NM_001204803, intron 2 of 20) intron (NM_001204803, intron 2 of 20) -18775 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 19856 chr3 111311218 111311343 + 0 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -230799 NR_134917 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 23492 chr5 149619039 149619127 + 0 NA intron (NM_001001669, intron 7 of 12) intron (NM_001001669, intron 7 of 12) 37511 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 30224 chr9 129278559 129278647 + 0 NA Intergenic Intergenic -3813 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 6851 chr12 33021471 33021575 + 0 NA Intergenic Intergenic -124677 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 29773 chr9 107282955 107283113 + 0 NA promoter-TSS (NM_002874) promoter-TSS (NM_002874) -202 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 21149 chr4 7042964 7043035 + 0 NA promoter-TSS (NM_153376) promoter-TSS (NM_153376) 2 NM_153376 257236 Hs.656757 NM_153376 ENSG00000173013 CCDC96 - coiled-coil domain containing 96 protein-coding 17209 chr2 226673486 226673590 + 0 NA Intergenic Intergenic -14745 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 27522 chr8 22865110 22865214 + 0 NA intron (NM_144962, intron 3 of 6) CpG -12810 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 13367 chr18 27922143 27922248 + 0 NA Intergenic Intergenic 114390 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 29597 chr9 94922449 94922553 + 0 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 112539 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 13617 chr18 55266002 55266169 + 0 NA intron (NM_001243226, intron 12 of 20) intron (NM_001243226, intron 12 of 20) 36536 NM_001243236 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 10215 chr15 60006464 60006553 + 0 NA TTS (NM_012182) TTS (NM_012182) 2286 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 2514 chr1 206930391 206930391 + 0 NA exon (NM_002644, exon 11 of 11) exon (NM_002644, exon 11 of 11) -8358 NM_005449 9214 Hs.58831 NM_005449 ENSG00000162894 FCMR FAIM3|TOSO Fc fragment of IgM receptor protein-coding 7209 chr12 63294415 63294533 + 0 NA Intergenic Intergenic -141664 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 27599 chr8 27426398 27426462 + 0 NA intron (NM_173175, intron 5 of 29) intron (NM_173175, intron 5 of 29) -6940 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 15152 chr2 20422148 20422237 + 0 NA Intergenic Intergenic -24879 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 22242 chr5 14011719 14011726 + 0 NA Intergenic CpG -67242 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 16917 chr2 200889183 200889347 + 0 NA promoter-TSS (NM_021824) promoter-TSS (NM_021824) -62 NM_001136039 60491 Hs.145284 NM_021824 ENSG00000196290 NIF3L1 ALS2CR1|CALS-7|MDS015 NGG1 interacting factor 3 like 1 protein-coding 5934 chr11 96781249 96781353 + 0 NA Intergenic Intergenic 272876 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LOC105369443 - uncharacterized LOC105369443 ncRNA 25677 chr7 12066665 12066818 + 0 NA Intergenic LTR10A|LTR|ERV1 -144481 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B - transmembrane protein 106B protein-coding 20276 chr3 140941628 140941807 + 0 NA promoter-TSS (NM_001104647) promoter-TSS (NM_001104647) -103 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 3807 chr10 68527529 68527562 + 0 NA promoter-TSS (NM_001324312) promoter-TSS (NM_001324312) -22 NM_001324313 8034 Hs.180408 NM_152707 ENSG00000122912 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 member 16 protein-coding 13727 chr18 63970991 63971104 + 0 NA intron (NM_198833, intron 1 of 6) intron (NM_198833, intron 1 of 6) 1018 NM_198833 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 CAP2|PI8|PSS5 serpin family B member 8 protein-coding 10981 chr16 8797649 8797808 + 0 NA promoter-TSS (NM_015421) promoter-TSS (NM_015421) -80 NM_015421 25880 Hs.513330 NM_015421 ENSG00000184857 TMEM186 C16orf51 transmembrane protein 186 protein-coding 10876 chr16 2023203 2023341 + 0 NA Intergenic Intergenic -3596 NM_001130012 9351 Hs.440896 NM_004785 ENSG00000065054 SLC9A3R2 E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1 SLC9A3 regulator 2 protein-coding 6322 chr11 128448631 128448783 + 0 NA Intergenic Intergenic 73603 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 2911 chr1 229225601 229225705 + 0 NA Intergenic Intergenic -45409 NM_001271998 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 23587 chr5 154940996 154941107 + 0 NA promoter-TSS (NM_001014990) promoter-TSS (NM_001014990) -22 NM_001014990 29093 Hs.483924 NM_014180 ENSG00000082515 MRPL22 HSPC158|L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 22651 chr5 66828963 66829067 + 0 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 239 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 12199 chr17 19719388 19719492 + 0 NA promoter-TSS (NR_135624) promoter-TSS (NR_135624) -461 NR_135624 146802 Hs.126830 NM_152908 ENSG00000180638 SLC47A2 MATE2|MATE2-B|MATE2-K|MATE2K solute carrier family 47 member 2 protein-coding 15543 chr2 53559691 53559838 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -208019 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 1526 chr1 112687501 112687640 + 0 NA intron (NM_001286072, intron 3 of 21) intron (NM_001286072, intron 3 of 21) 12899 NM_001321324 4343 Hs.514941 NM_020963 ENSG00000155363 MOV10 fSAP113|gb110 Mov10 RISC complex RNA helicase protein-coding 6506 chr12 6296262 6296358 + 0 NA Intergenic Intergenic -14126 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 26356 chr7 66740426 66740577 + 0 NA promoter-TSS (NM_001287062) promoter-TSS (NM_001287062) -155 NM_014504 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 23093 chr5 120160217 120160321 + 0 NA Intergenic Intergenic -304009 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 17489 chr20 3786705 3786856 + 0 NA promoter-TSS (NM_001810) promoter-TSS (NM_001810) 8 NM_001287516 994 Hs.153752 NM_004358 ENSG00000101224 CDC25B - cell division cycle 25B protein-coding 30074 chr9 122947921 122948025 + 0 NA intron (NM_012197, intron 1 of 25) intron (NM_012197, intron 1 of 25) 6964 NM_012197 23637 Hs.271341 NM_012197 ENSG00000011454 RABGAP1 GAPCENA|TBC1D11 RAB GTPase activating protein 1 protein-coding 21386 chr4 55729957 55730061 + 0 NA Intergenic MER72|LTR|ERV1 -90062 NR_003935 644145 Hs.570825 NR_003935 LOC644145 - exocyst complex component 1 pseudogene pseudo 20577 chr3 165643144 165643297 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 194252 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE CHE1|CHE2|E1 butyrylcholinesterase protein-coding 26294 chr7 54831176 54831373 + 0 NA Intergenic L2a|LINE|L2 71961 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 23499 chr5 149776847 149776951 + 0 NA intron (NM_001172699, intron 1 of 10) intron (NM_001172699, intron 1 of 10) 4959 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 16676 chr2 173652831 173652964 + 0 NA Intergenic Intergenic 298064 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 6415 chr11 134360436 134360540 + 0 NA intron (NM_138342, intron 7 of 19) intron (NM_138342, intron 7 of 19) 28614 NM_138342 89944 Hs.436178 NM_138342 ENSG00000149328 GLB1L2 MST114|MSTP114 galactosidase beta 1 like 2 protein-coding 3658 chr10 48400450 48400554 + 0 NA intron (NM_139049, intron 3 of 13) L2|LINE|L2 -1110 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 1418 chr1 101288688 101288792 + 0 NA Intergenic Intergenic -35097 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 31124 chrX 147901619 147901763 + 0 NA Intergenic L1MC2|LINE|L1 10126 NR_024502 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 27058 chr7 135211559 135211667 + 0 NA promoter-TSS (NM_014149) promoter-TSS (NM_014149) -49 NM_014149 29062 Hs.459858 NM_014149 ENSG00000105875 WDR91 HSPC049|SORF-1|SORF1 WD repeat domain 91 protein-coding 8446 chr13 94596131 94596319 + 0 NA promoter-TSS (NM_001304430) promoter-TSS (NM_001304430) 50 NM_001304430 23483 Hs.12393 NM_014305 ENSG00000088451 TGDS CATMANS|SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 23376 chr5 141642009 141642113 + 0 NA TTS (NM_001130029) TTS (NM_001130029) 5111 NM_001130029 285613 Hs.120094 NM_173828 ENSG00000164620 RELL2 C5orf16 RELT like 2 protein-coding 7875 chr12 127107887 127107991 + 0 NA Intergenic L2|LINE|L2 -47542 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 13567 chr18 50195025 50195143 + 0 NA promoter-TSS (NM_001080467) promoter-TSS (NM_001080467) -3 NM_001080467 4645 Hs.720076 NM_001080467 ENSG00000167306 MYO5B - myosin VB protein-coding 132 chr1 9473142 9473282 + 0 NA Intergenic Intergenic -44216 NR_104622 100506022 Hs.131775 NR_104622 LOC100506022 - uncharacterized LOC100506022 ncRNA 711 chr1 40952573 40952659 + 0 NA Intergenic Intergenic -26683 NR_125440 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|IMD24 CTP synthase 1 protein-coding 16910 chr2 200713180 200713298 + 0 NA non-coding (NR_037886, exon 3 of 3) non-coding (NR_037886, exon 3 of 3) 17516 NR_135012 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough pseudo 1791 chr1 154558849 154559014 + 0 NA promoter-TSS (NM_017582) promoter-TSS (NM_017582) -287 NM_017582 55585 Hs.607928 NM_017582 ENSG00000160714 UBE2Q1 GTAP|NICE-5|PRO3094|UBE2Q ubiquitin conjugating enzyme E2 Q1 protein-coding 12526 chr17 42677042 42677216 + 0 NA promoter-TSS (NM_024927) promoter-TSS (NM_024927) -99 NR_073573 79990 Hs.632251 NM_024927 ENSG00000068137 PLEKHH3 - pleckstrin homology, MyTH4 and FERM domain containing H3 protein-coding 5412 chr11 63869377 63869481 + 0 NA intron (NM_004954, intron 1 of 16) intron (NM_004954, intron 1 of 16) -19086 NM_017490 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 11864 chr16 90077309 90077444 + 0 NA Intergenic CpG -1446 NM_001098173 11105 Hs.406695 NM_052996 ENSG00000126856 PRDM7 PFM4|ZNF910 PR/SET domain 7 protein-coding 25033 chr6 113632437 113632596 + 0 NA intron (NR_125844, intron 1 of 2) intron (NR_125844, intron 1 of 2) 17559 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 8936 chr14 45135782 45135932 + 0 NA promoter-TSS (NM_001308133) promoter-TSS (NM_001308133) -82 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596 Fanconi anemia complementation group M protein-coding 7700 chr12 116819423 116819526 + 0 NA intron (NM_032814, intron 7 of 10) CpG 61953 NR_073189 8739 Hs.87247 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 26548 chr7 87918877 87919031 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger -15189 NM_001324417 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|MDC2 ADAM metallopeptidase domain 22 protein-coding 24943 chr6 99425351 99425493 + 0 NA promoter-TSS (NM_001322413) promoter-TSS (NM_001322413) -77 NR_136326 25957 Hs.520287 NM_015491 ENSG00000132424 PNISR C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2 PNN interacting serine and arginine rich protein protein-coding 28051 chr8 76431319 76431466 + 0 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 24738 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 21332 chr4 48016543 48016684 + 0 NA promoter-TSS (NM_207330) promoter-TSS (NM_207330) -159 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 25036 chr6 113654499 113654583 + 0 NA Intergenic Intergenic -4466 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 12019 chr17 7046238 7046387 + 0 NA Intergenic Intergenic -2389 NM_153357 162515 Hs.336564 NM_153357 ENSG00000174326 SLC16A11 MCT11 solute carrier family 16 member 11 protein-coding 29314 chr9 77981422 77981544 + 0 NA intron (NM_002072, intron 1 of 6) intron (NM_002072, intron 1 of 6) 49966 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 24951 chr6 100881281 100881385 + 0 NA promoter-TSS (NM_001284271) promoter-TSS (NM_001284271) 39 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 11729 chr16 81601212 81601361 + 0 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -10062 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 9486 chr14 85252184 85252288 + 0 NA Intergenic LTR16C|LTR|ERVL -135039 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 20225 chr3 136957843 136957956 + 0 NA promoter-TSS (NM_144717) promoter-TSS (NM_144717) 34 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 14600 chr19 46762571 46762780 + 0 NA Intergenic Intergenic -16212 NM_001039877 29888 Hs.631590 NM_013403 ENSG00000090372 STRN4 PPP2R6C|ZIN|zinedin striatin 4 protein-coding 2279 chr1 193121939 193122085 + 0 NA promoter-TSS (NM_024529) promoter-TSS (NM_024529) 54 NM_024529 79577 Hs.378996 NM_024529 ENSG00000134371 CDC73 C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX cell division cycle 73 protein-coding 30497 chrX 12741496 12741599 + 0 NA Intergenic MIR|SINE|MIR -49808 NM_002765 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 20596 chr3 168878013 168878063 + 0 NA Intergenic Intergenic -23907 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 18904 chr22 38874057 38874161 + 0 NA Intergenic L2c|LINE|L2 -1775 NM_001303494 23466 Hs.592201 NM_014292 ENSG00000183741 CBX6 - chromobox 6 protein-coding 6126 chr11 116499557 116499568 + 0 NA Intergenic Intergenic -139860 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 27669 chr8 33895985 33896050 + 0 NA Intergenic Intergenic -295911 NM_024025 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 27284 chr7 157289607 157289634 + 0 NA Intergenic Intergenic -47396 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 25840 chr7 22583350 22583479 + 0 NA Intergenic MLT1G3|LTR|ERVL-MaLR 20077 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 21484 chr4 78566127 78566231 + 0 NA intron (NM_005139, intron 2 of 12) intron (NM_005139, intron 2 of 12) 14591 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 4831 chr11 11621985 11622122 + 0 NA promoter-TSS (NM_198516) promoter-TSS (NM_198516) -39 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 16163 chr2 112891510 112891614 + 0 NA Intergenic Intergenic -21409 NM_173203 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 12102 chr17 10616680 10616755 + 0 NA intron (NR_125367, intron 10 of 10) intron (NR_125367, intron 10 of 10) 40592 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 DA2A|DA2B|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 21107 chr4 1684346 1684440 + 0 NA promoter-TSS (NM_001174070) promoter-TSS (NM_001174070) -80 NM_001174070 152877 Hs.143314 NM_001013622 ENSG00000174137 FAM53A DNTNP family with sequence similarity 53 member A protein-coding 21788 chr4 127965212 127965422 + 0 NA promoter-TSS (NM_001319306) promoter-TSS (NM_001319306) 61 NM_001319306 80167 Hs.143995 NM_025097 ENSG00000164074 ABHD18 C4orf29 abhydrolase domain containing 18 protein-coding 2076 chr1 173269583 173269687 + 0 NA intron (NR_037845, intron 2 of 2) Tigger7|DNA|TcMar-Tigger -62322 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 tumor necrosis factor superfamily member 4 protein-coding 3947 chr10 77711556 77711692 + 0 NA Intergenic CpG -73805 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 4757 chr11 7020392 7020516 + 0 NA promoter-TSS (NM_176822) promoter-TSS (NM_176822) -15 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 6858 chr12 38056789 38056893 + 0 NA Intergenic Intergenic -259914 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 15853 chr2 75602793 75602897 + 0 NA Intergenic Intergenic -33123 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 27833 chr8 53344228 53344479 + 0 NA Intergenic PABL_B|LTR|ERV1 -92656 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 14562 chr19 45506619 45506647 + 0 NA promoter-TSS (NM_003370) promoter-TSS (NM_003370) -797 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator-stimulated phosphoprotein protein-coding 3166 chr1 248874242 248874282 + 0 NA Intergenic tRNA-Glu-GAG_|tRNA|tRNA -15146 NM_001193328 55657 Hs.377705 NM_017865 ENSG00000171163 ZNF692 AREBP|Zfp692 zinc finger protein 692 protein-coding 3704 chr10 57624225 57624289 + 0 NA Intergenic AluJo|SINE|Alu -319698 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 18267 chr20 54132579 54132717 + 0 NA Intergenic Intergenic 41329 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 7279 chr12 75944560 75944640 + 0 NA Intergenic Intergenic 87176 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 25902 chr7 26087866 26087970 + 0 NA Intergenic Intergenic -64309 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 28814 chr8 143609641 143609793 + 0 NA promoter-TSS (NM_001329866) promoter-TSS (NM_001329866) -103 NR_138144 65263 Hs.165186 NM_023078 ENSG00000104524 PYCRL PYCR3 pyrroline-5-carboxylate reductase-like protein-coding 27918 chr8 60951080 60951232 + 0 NA Intergenic Intergenic 16592 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 28777 chr8 141154234 141154363 + 0 NA intron (NM_014957, intron 7 of 22) intron (NM_014957, intron 7 of 22) 25677 NM_014957 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 17526 chr20 5364542 5364567 + 0 NA Intergenic MER72|LTR|ERV1 -47822 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 25695 chr7 12715908 12715999 + 0 NA Intergenic Intergenic 28667 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 16708 chr2 177168379 177168483 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -44263 NM_001330247 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 6374 chr11 130916481 130916627 + 0 NA promoter-TSS (NM_001301089) promoter-TSS (NM_001301089) -67 NM_001347925 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 23974 chr6 7546972 7547076 + 0 NA intron (NM_001008844, intron 1 of 23) intron (NM_001008844, intron 1 of 23) 5449 NM_004415 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 12493 chr17 41665991 41666095 + 0 NA Intergenic CpG -22832 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 2860 chr1 226738126 226738230 + 0 NA intron (NM_002221, intron 1 of 7) CpG 997 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 29871 chr9 111728816 111728891 + 0 NA intron (NR_109816, intron 12 of 26) Tigger1|DNA|TcMar-Tigger 30680 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 C9orf84 - chromosome 9 open reading frame 84 protein-coding 18925 chr22 39634911 39635015 + 0 NA intron (NM_021096, intron 5 of 36) intron (NM_021096, intron 5 of 36) 64210 NM_001003406 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 28297 chr8 100415842 100415987 + 0 NA Intergenic Intergenic 33151 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 23350 chr5 140547564 140547704 + 0 NA promoter-TSS (NM_003732) promoter-TSS (NM_003732) -32 NM_003732 8637 Hs.594084 NM_003732 ENSG00000243056 EIF4EBP3 4E-BP3|4EBP3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding 4253 chr10 102432613 102432771 + 0 NA promoter-TSS (NM_024040) promoter-TSS (NM_024040) -26 NM_024040 79004 Hs.500874 NM_024040 ENSG00000107874 CUEDC2 C10orf66|bA18I14.5 CUE domain containing 2 protein-coding 7412 chr12 91406991 91407149 + 0 NA Intergenic Intergenic -223946 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 25962 chr7 30143947 30144051 + 0 NA intron (NM_152793, intron 1 of 2) intron (NM_152793, intron 1 of 2) 9063 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 12578 chr17 45170930 45171107 + 0 NA TTS (NM_001303436) TTS (NM_001303436) 467 NR_135646 105371795 Hs.569733 NR_135646 ENSG00000267288 LOC105371795 - uncharacterized LOC105371795 ncRNA 6741 chr12 24947042 24947146 + 0 NA intron (NM_005504, intron 1 of 10) intron (NM_005504, intron 1 of 10) 2365 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 30216 chr9 129080928 129081061 + 0 NA promoter-TSS (NM_001135917) promoter-TSS (NM_001135917) -110 NM_020438 57171 Hs.21701 NM_020438 ENSG00000167130 DOLPP1 LSFR2 dolichyldiphosphatase 1 protein-coding 19286 chr3 28241475 28241571 + 0 NA promoter-TSS (NM_182523) promoter-TSS (NM_182523) -110 NM_001331187 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 9419 chr14 77008020 77008152 + 0 NA Intergenic Intergenic 20613 NM_024496 64207 Hs.179260 NM_024496 ENSG00000119669 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein like protein-coding 8106 chr13 34469330 34469370 + 0 NA intron (NR_047036, intron 2 of 2) intron (NR_047036, intron 2 of 2) 171335 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 5419 chr11 63974451 63974493 + 0 NA promoter-TSS (NM_004074) promoter-TSS (NM_004074) -135 NM_004074 1351 Hs.743989 NM_004074 ENSG00000176340 COX8A COX|COX8|COX8-2|COX8L|VIII|VIII-L cytochrome c oxidase subunit 8A protein-coding 5442 chr11 64778808 64778912 + 0 NA promoter-TSS (NM_004630) promoter-TSS (NM_004630) -16 NM_201995 7536 Hs.502829 NM_004630 ENSG00000168066 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 29356 chr9 81146708 81146812 + 0 NA Intergenic Intergenic 542775 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 4490 chr10 119872915 119873028 + 0 NA promoter-TSS (NM_001256378) promoter-TSS (NM_001256378) -88 NM_024834 79892 Hs.124246 NM_024834 ENSG00000197771 MCMBP C10orf119|MCM-BP minichromosome maintenance complex binding protein protein-coding 5270 chr11 57499695 57499799 + 0 NA intron (NM_003627, intron 5 of 14) CpG 15138 NM_001198810 8501 Hs.591952 NM_003627 ENSG00000149150 SLC43A1 LAT3|PB39|POV1|R00504 solute carrier family 43 member 1 protein-coding 8955 chr14 49768041 49768066 + 0 NA promoter-TSS (NM_014315) promoter-TSS (NM_014315) -16 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 2351 chr1 200659336 200659440 + 0 NA intron (NM_001031725, intron 3 of 7) L2b|LINE|L2 7363 NM_001320182 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 2 chr1 629862 630016 + 0 NA promoter-TSS (NR_125957) promoter-TSS (NR_125957) -930 NR_125957 101928626 Hs.637667 NR_125957 ENSG00000230021 LOC101928626 - uncharacterized LOC101928626 ncRNA 25609 chr7 5642060 5642259 + 0 NA intron (NM_207111, intron 14 of 16) intron (NM_207111, intron 14 of 16) 38302 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 4229 chr10 101066297 101066427 + 0 NA promoter-TSS (NR_135068) promoter-TSS (NR_135068) 63 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 25441 chr6 160519983 160520108 + 0 NA Intergenic Intergenic -8921 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 2125 chr1 178011565 178011669 + 0 NA intron (NR_037167, intron 9 of 9) intron (NR_037167, intron 9 of 9) 26390 NR_037167 730102 Hs.733192 NR_037167 ENSG00000242193 LOC730102 - quinone oxidoreductase-like protein 2 pseudogene pseudo 29466 chr9 87615699 87615905 + 0 NA intron (NM_001288729, intron 3 of 25) intron (NM_001288729, intron 3 of 25) -110257 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 14778 chr19 54137555 54137693 + 0 NA promoter-TSS (NM_014516).2 promoter-TSS (NM_014516).2 -96 NM_014516 4849 Hs.343571 NM_014516 ENSG00000088038 CNOT3 LENG2|NOT3|NOT3H CCR4-NOT transcription complex subunit 3 protein-coding 11005 chr16 10738913 10739010 + 0 NA Intergenic AluSq|SINE|Alu -4825 NM_001278506 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 28804 chr8 143246840 143246944 + 0 NA promoter-TSS (NM_001271156) promoter-TSS (NM_001271156) -36 NM_173832 286128 Hs.668016 NM_173832 ENSG00000181638 ZFP41 ZNF753|zfp-41 ZFP41 zinc finger protein protein-coding 28733 chr8 133725208 133725287 + 0 NA Intergenic Intergenic -41181 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 24829 chr6 79895853 79895957 + 0 NA Intergenic Intergenic 51693 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 22558 chr5 56491027 56491131 + 0 NA Intergenic Intergenic -9310 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 19135 chr3 9422819 9422941 + 0 NA intron (NM_001292043, intron 1 of 24) intron (NM_001292043, intron 1 of 24) 25180 NM_001292043 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 973 chr1 60942414 60942518 + 0 NA intron (NR_110617, intron 5 of 6) intron (NR_110617, intron 5 of 6) 28310 NR_110617 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 25750 chr7 17069224 17069372 + 0 NA Intergenic Intergenic -187309 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 14977 chr2 9801222 9801326 + 0 NA Intergenic Intergenic -42168 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 10811 chr15 100721840 100721944 + 0 NA Intergenic Intergenic 119342 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 29441 chr9 86354395 86354550 + 0 NA promoter-TSS (NM_001185074) promoter-TSS (NM_001185074) 15 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 ZCCHC6 PAPD6|TUT7 zinc finger CCHC-type containing 6 protein-coding 5864 chr11 93939569 93939673 + 0 NA Intergenic L2c|LINE|L2 -81591 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin like 1 protein-coding 14146 chr19 12737019 12737169 + 0 NA promoter-TSS (NM_004317) promoter-TSS (NM_004317) -365 NM_004317 439 Hs.465985 NM_004317 ENSG00000198356 ASNA1 ARSA-I|ARSA1|ASNA-I|GET3|TRC40 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) protein-coding 18154 chr20 49046668 49046820 + 0 NA promoter-TSS (NR_110624) promoter-TSS (NR_110624) 498 NR_045796 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 30504 chrX 13653033 13653137 + 0 NA promoter-TSS (NM_001297563) promoter-TSS (NM_001297563) -21 NM_001297564 170082 Hs.222855 NM_152634 ENSG00000176896 TCEANC - transcription elongation factor A N-terminal and central domain containing protein-coding 28393 chr8 106047660 106047764 + 0 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 12791 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 - ZFPM2 antisense RNA 1 ncRNA 23716 chr5 172188093 172188197 + 0 NA 5' UTR (NM_005990, exon 1 of 19) 5' UTR (NM_005990, exon 1 of 19) 197 NM_005990 6793 Hs.744005 NM_005990 ENSG00000072786 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 2857 chr1 226626538 226626642 + 0 NA Intergenic Intergenic 48478 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 ncRNA 3048 chr1 238052651 238052757 + 0 NA Intergenic L1MEc|LINE|L1 -161782 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 24129 chr6 17987823 17987892 + 0 NA promoter-TSS (NM_001105567) promoter-TSS (NM_001105567) -234 NM_001243423 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 16919 chr2 200963625 200963783 + 0 NA promoter-TSS (NR_033915) promoter-TSS (NR_033915) -3 NM_006190 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 20708 chr3 177448101 177448213 + 0 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 6236 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 7065 chr12 53428366 53428470 + 0 NA intron (NM_001164691, intron 6 of 8) intron (NM_001164691, intron 6 of 8) 4563 NM_001164691 269 Hs.659889 NM_020547 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor type 2 protein-coding 23973 chr6 7541591 7541694 + 0 NA promoter-TSS (NM_004415) promoter-TSS (NM_004415) 67 NM_004415 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 19576 chr3 57007036 57007140 + 0 NA intron (NM_001128615, intron 2 of 12) L1ME3A|LINE|L1 -53353 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 12919 chr17 70169421 70169562 + 0 NA promoter-TSS (NR_036534) promoter-TSS (NR_036534) -44 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 6394 chr11 132911368 132911449 + 0 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 32229 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 7104 chr12 55817763 55817867 + 0 NA promoter-TSS (NR_026722) promoter-TSS (NR_026722) -59 NR_026723 84324 Hs.505676 NM_033082 ENSG00000205323 SARNP CIP29|HCC1|HSPC316|THO1 SAP domain containing ribonucleoprotein protein-coding 23579 chr5 154682556 154682709 + 0 NA Intergenic Intergenic -3144 NR_031638 100302284 NR_031638 ENSG00000221552 MIR1303 MIRN1303|hsa-mir-1303 microRNA 1303 ncRNA 8136 chr13 39507195 39507303 + 0 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 95970 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFP - lipoma HMGIC fusion partner protein-coding 28558 chr8 122909632 122909718 + 0 NA intron (NM_014943, intron 2 of 3) intron (NM_014943, intron 2 of 3) 128013 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 11720 chr16 81493797 81493950 + 0 NA intron (NM_198390, intron 1 of 20) MIRb|SINE|MIR -1476 NM_030629 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 16322 chr2 130824576 130824693 + 0 NA Intergenic Intergenic 68343 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 22707 chr5 73120484 73120613 + 0 NA promoter-TSS (NM_001161342) promoter-TSS (NM_001161342) -13 NM_001161342 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 12172 chr17 17914028 17914182 + 0 NA intron (NM_001288789, intron 1 of 12) intron (NM_001288789, intron 1 of 12) 58365 NM_001082968 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 15679 chr2 65316192 65316341 + 0 NA intron (NM_181784, intron 5 of 5) intron (NM_181784, intron 5 of 5) 50531 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 6577 chr12 9273371 9273396 + 0 NA Intergenic Intergenic -10274 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 21994 chr4 168796474 168796578 + 0 NA intron (NM_001166109, intron 9 of 18) L2c|LINE|L2 -35479 NM_001166110 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 15786 chr2 71504018 71504026 + 0 NA intron (NM_001130981, intron 4 of 55) intron (NM_001130981, intron 4 of 55) 37320 NM_001130987 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 8396 chr13 77535603 77535728 + 0 NA promoter-TSS (NM_003843) promoter-TSS (NM_003843) -9 NM_144777 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 2949 chr1 232221976 232222053 + 0 NA Intergenic Intergenic 293594 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 27679 chr8 37143334 37143370 + 0 NA Intergenic MIRb|SINE|MIR 350561 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 15594 chr2 58046621 58046757 + 0 NA promoter-TSS (NM_001130480) promoter-TSS (NM_001130480) -23 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 6624 chr12 12803368 12803495 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -9915 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 26290 chr7 54581687 54581792 + 0 NA Intergenic L1MC1|LINE|L1 24769 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 209 chr1 15524421 15524468 + 0 NA promoter-TSS (NM_001229) promoter-TSS (NM_001229) 1 NM_001278054 842 Hs.329502 NM_001229 ENSG00000132906 CASP9 APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56 caspase 9 protein-coding 19345 chr3 36993256 36993285 + 0 NA promoter-TSS (NM_014805) promoter-TSS (NM_014805) 34 NM_014805 9852 Hs.28020 NM_014805 ENSG00000178567 EPM2AIP1 - EPM2A interacting protein 1 protein-coding 17849 chr20 31699298 31699435 + 0 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -22141 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 10581 chr15 83011684 83011813 + 0 NA promoter-TSS (NM_001160116) promoter-TSS (NM_001160116) -107 NM_001160113 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 7442 chr12 93625151 93625266 + 0 NA Intergenic Intergenic -52163 NR_135147 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 20367 chr3 149340030 149340134 + 0 NA Intergenic Intergenic -6321 NM_138786 116441 Hs.22026 NM_138786 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 15573 chr2 55425499 55425603 + 0 NA Intergenic Intergenic -5630 NM_001254943 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO coiled-coil domain containing 88A protein-coding 11205 chr16 29996086 29996254 + 0 NA promoter-TSS (NM_001197323) promoter-TSS (NM_001197323) -39 NM_001304562 283899 Hs.434864 NM_173618 ENSG00000169592 INO80E CCDC95 INO80 complex subunit E protein-coding 5916 chr11 96038170 96038324 + 0 NA intron (NM_032427, intron 2 of 4) (TTTG)n|Simple_repeat|Simple_repeat -114040 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 29878 chr9 111896702 111896820 + 0 NA promoter-TSS (NM_003358) promoter-TSS (NM_003358) -5 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 20600 chr3 169026979 169027057 + 0 NA Intergenic Intergenic 119287 NM_001105077 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 4460 chr10 118871538 118871652 + 0 NA Intergenic MER74B|LTR|ERVL -116349 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 15320 chr2 32135540 32135644 + 0 NA intron (NM_014946, intron 9 of 16) intron (NM_014946, intron 9 of 16) -30249 NM_001193515 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 26686 chr7 99616900 99617004 + 0 NA promoter-TSS (NM_145115) promoter-TSS (NM_145115) 4 NM_145115 221785 Hs.446297 NM_145115 ENSG00000197037 ZSCAN25 ZNF498 zinc finger and SCAN domain containing 25 protein-coding 19712 chr3 97232822 97232976 + 0 NA intron (NM_001080448, intron 4 of 17) MER50|LTR|ERV1 -206694 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 14569 chr19 45584349 45584453 + 0 NA intron (NM_025136, intron 1 of 1) intron (NM_025136, intron 1 of 1) 463 NM_001017989 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 OPA3, outer mitochondrial membrane lipid metabolism regulator protein-coding 14300 chr19 19618770 19618890 + 0 NA promoter-TSS (NM_025245) promoter-TSS (NM_025245) 86 NM_025245 80714 Hs.466257 NM_025245 ENSG00000105717 PBX4 - PBX homeobox 4 protein-coding 6658 chr12 14066150 14066230 + 0 NA Intergenic Intergenic -86102 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 7821 chr12 123089814 123089918 + 0 NA intron (NM_001300801, intron 1 of 24) intron (NM_001300801, intron 1 of 24) 8482 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 LOC100507091 - uncharacterized LOC100507091 ncRNA 22837 chr5 87267673 87267884 + 0 NA promoter-TSS (NM_002890) promoter-TSS (NM_002890) -475 NM_002890 5921 Hs.664080 NM_002890 ENSG00000145715 RASA1 CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP RAS p21 protein activator 1 protein-coding 22808 chr5 82278642 82278746 + 0 NA promoter-TSS (NM_001025) promoter-TSS (NM_001025) -278 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 S23 ribosomal protein S23 protein-coding 15206 chr2 26244900 26244932 + 0 NA promoter-TSS (NM_000182) promoter-TSS (NM_000182) 168 NM_001281512 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit protein-coding 10464 chr15 75367925 75368118 + 0 NA intron (NM_006715, intron 2 of 25) intron (NM_006715, intron 2 of 25) 606 NM_001256496 4123 Hs.26232 NM_006715 ENSG00000140400 MAN2C1 MAN6A8|MANA|MANA1 mannosidase alpha class 2C member 1 protein-coding 18418 chr21 10692777 10692929 + 0 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 171339 NM_199260 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 14609 chr19 47096424 47096504 + 0 NA intron (NM_015168, intron 2 of 14) intron (NM_015168, intron 2 of 14) 17288 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 6449 chr12 2336485 2336603 + 0 NA intron (NM_001129830, intron 3 of 47) intron (NM_001129830, intron 3 of 47) 66768 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 20891 chr3 188153832 188153867 + 0 NA promoter-TSS (NM_001167672) promoter-TSS (NM_001167672) -24 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 17416 chr20 314142 314246 + 0 NA Intergenic FAM|SINE|Alu 11058 NR_109990 100507459 Hs.659689 NR_109990 NRSN2-AS1 - NRSN2 antisense RNA 1 ncRNA 1873 chr1 157993567 157993647 + 0 NA 5' UTR (NM_001286349, exon 1 of 13) 5' UTR (NM_001286349, exon 1 of 13) 334 NM_018240 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 3651 chr10 47553357 47553510 + 0 NA promoter-TSS (NR_024495) promoter-TSS (NR_024495) 90 NR_024495 642826 Hs.463017 NR_024495 BMS1P6 BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2 BMS1, ribosome biogenesis factor pseudogene 6 pseudo 4157 chr10 97445989 97446179 + 0 NA promoter-TSS (NM_001318362) promoter-TSS (NM_001318362) -47 NM_198046 84287 Hs.76662 NM_032327 ENSG00000171307 ZDHHC16 APH2|DHHC-16 zinc finger DHHC-type containing 16 protein-coding 6711 chr12 19130078 19130182 + 0 NA exon (NM_001143821, exon 2 of 28) exon (NM_001143821, exon 2 of 28) 438 NM_001190860 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 30930 chrX 107155368 107155472 + 0 NA intron (NM_017681, intron 4 of 8) intron (NM_017681, intron 4 of 8) -36593 NM_001171080 55285 Hs.139053 NM_018301 ENSG00000089682 RBM41 - RNA binding motif protein 41 protein-coding 17094 chr2 218039308 218039412 + 0 NA intron (NR_034176, intron 2 of 13) intron (NR_034176, intron 2 of 13) 4426 NR_034176 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 8062 chr13 30743736 30743840 + 0 NA intron (NM_001204406, intron 2 of 5) L2c|LINE|L2 8280 NM_001629 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 9332 chr14 72665385 72665459 + 0 NA intron (NM_012074, intron 9 of 9) intron (NM_012074, intron 9 of 9) 148602 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 1212 chr1 85308207 85308311 + 0 NA Intergenic Intergenic -31355 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 4791 chr11 9314649 9314784 + 0 NA promoter-TSS (NM_015012) promoter-TSS (NM_015012) 52 NM_015012 440026 Hs.594563 NM_015012 ENSG00000166471 TMEM41B - transmembrane protein 41B protein-coding 2787 chr1 223500683 223500815 + 0 NA Intergenic Intergenic 107376 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 27786 chr8 48514566 48514692 + 0 NA Intergenic CpG -36938 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 18680 chr22 22409340 22409393 + 0 NA Intergenic Intergenic 99821 NR_130642 140883 Hs.43834 NM_080764 ENSG00000275004 ZNF280B 5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632 zinc finger protein 280B protein-coding 25255 chr6 143060608 143060762 + 0 NA promoter-TSS (NM_001286588) promoter-TSS (NM_001286588) -157 NM_001286588 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 6404 chr11 134026471 134026563 + 0 NA Intergenic Intergenic -5755 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 31131 chrX 149505221 149505371 + 0 NA promoter-TSS (NM_000202) promoter-TSS (NM_000202) 58 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 505 chr1 30006462 30006566 + 0 NA Intergenic MER84|LTR|ERV1 31098 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 21105 chr4 1289677 1289833 + 0 NA promoter-TSS (NR_123716) promoter-TSS (NR_123716) -96 NM_001297430 10296 Hs.139896 NM_005882 ENSG00000090316 MAEA EMLP|EMP|GID9|HLC-10|PIG5 macrophage erythroblast attacher protein-coding 8069 chr13 31162338 31162462 + 0 NA promoter-TSS (NM_001286503) promoter-TSS (NM_001286503) -12 NM_001286504 10808 Hs.743267 NM_006644 ENSG00000120694 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock protein family H (Hsp110) member 1 protein-coding 670 chr1 38991092 38991234 + 0 NA promoter-TSS (NM_001136275) promoter-TSS (NM_001136275) -81 NM_024595 79647 Hs.293563 NM_024595 ENSG00000174574 AKIRIN1 C1orf108|STRF2 akirin 1 protein-coding 2739 chr1 220487554 220487646 + 0 NA Intergenic Intergenic -40583 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 8429 chr13 85108501 85108630 + 0 NA intron (NR_126383, intron 1 of 5) LTR28C|LTR|ERV1 39492 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 837 chr1 47334164 47334303 + 0 NA intron (NM_001136140, intron 1 of 4) CpG 436 NR_046395 51727 Hs.731647 NM_016308 ENSG00000162368 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine/uridine monophosphate kinase 1 protein-coding 7708 chr12 117190351 117190499 + 0 NA promoter-TSS (NM_033624) promoter-TSS (NM_033624) 70 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 30026 chr9 120892836 120892940 + 0 NA intron (NM_001286840, intron 1 of 14) L2b|LINE|L2 2008 NM_001286840 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding 22798 chr5 81626739 81626843 + 0 NA intron (NM_012446, intron 3 of 16) intron (NM_012446, intron 3 of 16) 124462 NM_001256732 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 9021 chr14 53924926 53924967 + 0 NA Intergenic Intergenic 23538 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 149 chr1 10398817 10398948 + 0 NA promoter-TSS (NM_001304451) promoter-TSS (NM_001304451) -110 NM_002631 5226 Hs.464071 NM_002631 ENSG00000142657 PGD 6PGD phosphogluconate dehydrogenase protein-coding 27887 chr8 57227454 57227577 + 0 NA intron (NR_038235, intron 8 of 9).2 intron (NR_038235, intron 8 of 9).2 9239 NR_038235 100507651 Hs.371831 NR_038235 ENSG00000253301 LINC01606 - long intergenic non-protein coding RNA 1606 ncRNA 20448 chr3 154089569 154089673 + 0 NA intron (NR_037901, intron 2 of 3) MER102a|DNA|hAT-Charlie -31382 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 28843 chr8 144685131 144685202 + 0 NA intron (NM_001308208, intron 1 of 10) CpG 646 NM_001308208 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 406 chr1 26111040 26111182 + 0 NA promoter-TSS (NM_001243532) promoter-TSS (NM_001243532) -54 NM_001243532 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 7088 chr12 54280535 54280667 + 0 NA promoter-TSS (NM_012117) promoter-TSS (NM_012117) -89 NR_135167 3178 Hs.546261 NM_002136 ENSG00000135486 HNRNPA1 ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 heterogeneous nuclear ribonucleoprotein A1 protein-coding 4798 chr11 9568979 9569127 + 0 NA Intergenic Intergenic -4628 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 23868 chr6 1481508 1481612 + 0 NA Intergenic MLT1O|LTR|ERVL-MaLR -91149 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 763 chr1 43550153 43550312 + 0 NA intron (NM_001329137, intron 4 of 34) intron (NM_001329137, intron 4 of 34) 19372 NM_130440 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase, receptor type F protein-coding 19801 chr3 105402704 105402816 + 0 NA intron (NM_001243283, intron 1 of 2) L1PB1|LINE|L1 36047 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 22814 chr5 82406348 82406395 + 0 NA Intergenic Intergenic 126909 NM_001017971 92270 Hs.729805 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 5948 chr11 100776361 100776399 + 0 NA intron (NM_152432, intron 2 of 23) intron (NM_152432, intron 2 of 23) -88425 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 12786 chr17 59619284 59619415 + 0 NA promoter-TSS (NM_001288653) promoter-TSS (NM_001288653) -340 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc clathrin heavy chain protein-coding 17496 chr20 3889165 3889358 + 0 NA promoter-TSS (NM_001324193) promoter-TSS (NM_001324193) 327 NR_136715 80025 Hs.114180 NM_024960 ENSG00000125779 PANK2 C20orf48|HARP|HSS|NBIA1|PKAN pantothenate kinase 2 protein-coding 26481 chr7 79317785 79317889 + 0 NA intron (NM_012301, intron 1 of 21) intron (NM_012301, intron 1 of 21) -135120 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 27640 chr8 29770508 29770662 + 0 NA intron (NR_125815, intron 1 of 3) intron (NR_125815, intron 1 of 3) 22276 NR_125816 101929450 Hs.512440 NR_125814 ENSG00000253490 LINC02099 - long intergenic non-protein coding RNA 2099 ncRNA 14289 chr19 19192681 19192803 + 0 NA promoter-TSS (NM_005919) promoter-TSS (NM_005919) -24 NM_001278728 8625 Hs.153629 NM_003721 ENSG00000064490 RFXANK ANKRA1|BLS|F14150_1|RFX-B regulatory factor X associated ankyrin containing protein protein-coding 9725 chr14 103385314 103385400 + 0 NA promoter-TSS (NM_001128918) promoter-TSS (NM_001128918) -7 NM_001128919 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a microtubule affinity regulating kinase 3 protein-coding 7118 chr12 56079977 56080085 + 0 NA promoter-TSS (NM_001982) promoter-TSS (NM_001982) 6 NM_001982 2065 Hs.118681 NM_001982 ENSG00000065361 ERBB3 ErbB-3|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 erb-b2 receptor tyrosine kinase 3 protein-coding 26209 chr7 46651199 46651348 + 0 NA Intergenic LTR32|LTR|ERVL 45849 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 3389 chr10 21495802 21495838 + 0 NA TTS (NR_031736) TTS (NR_031736) 821 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 4063 chr10 91164086 91164146 + 0 NA intron (NM_001257101, intron 1 of 9) CpG 1104 NM_001257101 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 4883 chr11 14125755 14125793 + 0 NA intron (NM_006108, intron 5 of 15) MLT2B4|LTR|ERVL 163137 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 16494 chr2 156342499 156342666 + 0 NA Intergenic CpG -9807 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 4805 chr11 9906051 9906155 + 0 NA intron (NM_030962, intron 16 of 39) intron (NM_030962, intron 16 of 39) 66961 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 26546 chr7 87702447 87702551 + 0 NA intron (NM_138290, intron 4 of 11) AluJr|SINE|Alu 10824 NM_000927 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 21709 chr4 112285844 112285948 + 0 NA promoter-TSS (NM_052864) promoter-TSS (NM_052864) 7 NM_052864 92610 Hs.310640 NM_052864 ENSG00000145365 TIFA T2BP|T6BP|TIFAA TRAF interacting protein with forkhead associated domain protein-coding 19555 chr3 53072818 53072922 + 0 NA Intergenic Intergenic -26797 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm-like with four mbt domains 1 protein-coding 30792 chrX 68498948 68499056 + 0 NA 5' UTR (NM_001195214, exon 1 of 6) 5' UTR (NM_001195214, exon 1 of 6) 220 NM_173834 286451 Hs.82719 NM_173834 ENSG00000181704 YIPF6 FinGER6 Yip1 domain family member 6 protein-coding 12747 chr17 57107595 57107699 + 0 NA intron (NM_001242902, intron 3 of 11) intron (NM_001242902, intron 3 of 11) 21873 NM_001242902 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 8420 chr13 79936819 79936923 + 0 NA Intergenic Intergenic 64285 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 1998 chr1 165851102 165851206 + 0 NA intron (NM_012474, intron 1 of 6) intron (NM_012474, intron 1 of 6) 23659 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 2930 chr1 230642360 230642464 + 0 NA promoter-TSS (NM_001145036) promoter-TSS (NM_001145036) -44 NM_007357 22796 Hs.211800 NM_007357 ENSG00000135775 COG2 LDLC component of oligomeric golgi complex 2 protein-coding 5387 chr11 62787365 62787494 + 0 NA promoter-TSS (NM_199337) promoter-TSS (NM_199337) 27 NM_199337 374395 Hs.381134 NM_199337 ENSG00000185475 TMEM179B - transmembrane protein 179B protein-coding 6774 chr12 27014302 27014457 + 0 NA promoter-TSS (NM_016551) promoter-TSS (NM_016551) 27 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 20169 chr3 132536199 132536303 + 0 NA intron (NM_001329126, intron 56 of 56) FRAM|SINE|Alu -60986 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 15957 chr2 95240154 95240307 + 0 NA Intergenic L1PA16|LINE|L1 -34218 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 21891 chr4 148442568 148442730 + 0 NA promoter-TSS (NM_001166104) promoter-TSS (NM_001166104) -129 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 18212 chr20 51306933 51306938 + 0 NA Intergenic Intergenic 146042 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 1367 chr1 96362662 96362816 + 0 NA intron (NR_110693, intron 1 of 5) L2a|LINE|L2 11386 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 30807 chrX 70433981 70434029 + 0 NA TTS (NM_001171191) TTS (NM_001171191) -10850 NM_021120 1741 Hs.721586 NM_020730 ENSG00000082458 DLG3 MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR discs large MAGUK scaffold protein 3 protein-coding 28958 chr9 19230125 19230273 + 0 NA promoter-TSS (NM_017925) promoter-TSS (NM_017925) -291 NM_001330640 55667 Hs.249591 NM_017925 ENSG00000137145 DENND4C C9orf55|C9orf55B|RAB10GEF|bA513M16.3 DENN domain containing 4C protein-coding 30220 chr9 129140011 129140200 + 0 NA intron (NM_178000, intron 8 of 9) intron (NM_178000, intron 8 of 9) 28417 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 29129 chr9 69035978 69036082 + 0 NA intron (NM_001161706, intron 1 of 4) CpG 467 NM_001161706 2395 Hs.20685 NM_000144 ENSG00000165060 FXN CyaY|FA|FARR|FRDA|X25 frataxin protein-coding 17819 chr20 25407509 25407628 + 0 NA promoter-TSS (NM_021067) promoter-TSS (NM_021067) -115 NR_134574 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 PSF1 GINS complex subunit 1 protein-coding 7992 chr13 25574543 25574647 + 0 NA intron (NM_001313741, intron 18 of 35) intron (NM_001313741, intron 18 of 35) 105821 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 18927 chr22 40044617 40044646 + 0 NA promoter-TSS (NM_001024843) promoter-TSS (NM_001024843) -186 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing 6B protein-coding 15928 chr2 86442736 86442838 + 0 NA intron (NM_001146688, intron 2 of 25) intron (NM_001146688, intron 2 of 25) 1326 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 14138 chr19 12441060 12441192 + 0 NA promoter-TSS (NM_005815) promoter-TSS (NM_005815) -14 NM_005815 10224 Hs.636894 NM_005815 ENSG00000180855 ZNF443 ZK1 zinc finger protein 443 protein-coding 28501 chr8 118878625 118878798 + 0 NA Intergenic Intergenic 73433 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 28406 chr8 107181326 107181405 + 0 NA Intergenic MamTip2|DNA|hAT-Tip100 155150 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 13066 chr17 78169565 78169669 + 0 NA intron (NM_004710, intron 1 of 3) intron (NM_004710, intron 1 of 3) 1072 NM_001320523 9144 Hs.464210 NM_004710 ENSG00000108639 SYNGR2 - synaptogyrin 2 protein-coding 23186 chr5 131164553 131164631 + 0 NA intron (NR_134495, intron 1 of 3) CpG 756 NR_073488 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 27516 chr8 22669114 22669218 + 0 NA promoter-TSS (NM_018688) promoter-TSS (NM_018688) -18 NM_018688 55909 Hs.433722 NM_018688 ENSG00000147439 BIN3 - bridging integrator 3 protein-coding 18966 chr22 41832924 41833019 + 0 NA promoter-TSS (NR_103834) promoter-TSS (NR_103834) -108 NR_103834 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 12183 chr17 18260467 18260559 + 0 NA promoter-TSS (NM_001144900) promoter-TSS (NM_001144900) -21 NM_139162 125170 Hs.655555 NM_139162 ENSG00000177427 MIEF2 MID49|SMCR7 mitochondrial elongation factor 2 protein-coding 24123 chr6 17706801 17706963 + 0 NA promoter-TSS (NR_134618) promoter-TSS (NR_134618) -48 NM_001278210 9972 Hs.601591 NM_005124 ENSG00000124789 NUP153 HNUP153|N153 nucleoporin 153 protein-coding 11819 chr16 87765924 87766031 + 0 NA promoter-TSS (NM_001184856) promoter-TSS (NM_001184856) 15 NM_017566 54758 Hs.123450 NM_017566 ENSG00000104731 KLHDC4 - kelch domain containing 4 protein-coding 27452 chr8 18084868 18084972 + 0 NA promoter-TSS (NM_177924) promoter-TSS (NM_177924) 52 NR_125429 101929066 Hs.648717 NR_125429 ENSG00000245281 LOC101929066 - uncharacterized LOC101929066 ncRNA 14020 chr19 7535652 7535688 + 0 NA promoter-TSS (NM_001166114) promoter-TSS (NM_001166114) -33 NM_001166114 10908 Hs.631863 NM_006702 ENSG00000032444 PNPLA6 BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws patatin like phospholipase domain containing 6 protein-coding 12304 chr17 30906252 30906447 + 0 NA promoter-TSS (NM_024683) promoter-TSS (NM_024683) -81 NM_024683 79736 Hs.317340 NM_024683 ENSG00000172171 TEFM C17orf42 transcription elongation factor, mitochondrial protein-coding 27965 chr8 66124019 66124165 + 0 NA Intergenic Intergenic -2951 NM_184085 84675 Hs.85524 NM_033058 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 22687 chr5 69415054 69415256 + 0 NA promoter-TSS (NM_001244734) promoter-TSS (NM_001244734) 43 NM_001038603 153562 Hs.657687 NM_144724 ENSG00000152939 MARVELD2 DFNB49|MARVD2|MRVLDC2|Tric MARVEL domain containing 2 protein-coding 12293 chr17 29744715 29744842 + 0 NA intron (NM_001282130, intron 2 of 7) intron (NM_001282130, intron 2 of 7) 16654 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 18648 chr22 20394068 20394128 + 0 NA promoter-TSS (NM_001256523) promoter-TSS (NM_001256523) -17 NM_003426 7625 Hs.517418 NM_003426 ENSG00000185252 ZNF74 COS52|ZFP520|ZNF520|hZNF7 zinc finger protein 74 protein-coding 14930 chr2 3662360 3662464 + 0 NA intron (NM_018436, intron 1 of 11) intron (NM_018436, intron 1 of 11) 4216 NM_018436 55821 Hs.97899 NM_018436 ENSG00000151360 ALLC ALC allantoicase protein-coding 29192 chr9 71758453 71758556 + 0 NA intron (NM_013390, intron 1 of 23) LTR49|LTR|ERV1 10380 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 25265 chr6 144095553 144095695 + 0 NA promoter-TSS (NM_031287) promoter-TSS (NM_031287) -7 NM_031287 83443 Hs.110695 NM_031287 ENSG00000169976 SF3B5 SF3b10|Ysf3 splicing factor 3b subunit 5 protein-coding 17306 chr2 234133120 234133224 + 0 NA Intergenic Intergenic 82470 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 12031 chr17 7296505 7296640 + 0 NA Intergenic CpG -2015 NM_015982 51087 Hs.567494 NM_015982 ENSG00000006047 YBX2 CONTRIN|CSDA3|DBPC|MSY2 Y-box binding protein 2 protein-coding 111 chr1 8026260 8026442 + 0 NA promoter-TSS (NM_018948) promoter-TSS (NM_018948) -18 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 4776 chr11 8227465 8227561 + 0 NA intron (NR_073006, intron 2 of 3) MIRb|SINE|MIR 36365 NR_073006 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 6206 chr11 120138153 120138257 + 0 NA promoter-TSS (NM_012101) promoter-TSS (NM_012101) -50 NM_012101 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 23711 chr5 172006701 172006805 + 0 NA 5' UTR (NM_012300, exon 1 of 13) 5' UTR (NM_012300, exon 1 of 13) 120 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 30603 chrX 34657368 34657472 + 0 NA promoter-TSS (NM_031442) promoter-TSS (NM_031442) -132 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 25791 chr7 19916128 19916232 + 0 NA Intergenic Intergenic -143399 NM_152774 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 559 chr1 32753742 32753886 + 0 NA intron (NM_020888, intron 1 of 6) intron (NM_020888, intron 1 of 6) -11820 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 5679 chr11 75562676 75562780 + 0 NA intron (NM_001235, intron 1 of 4) intron (NM_001235, intron 1 of 4) 672 NM_001235 871 Hs.596449 NM_001235 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46 serpin family H member 1 protein-coding 5655 chr11 73876813 73877004 + 0 NA promoter-TSS (NM_016565) promoter-TSS (NM_016565) -61 NM_025155 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 22387 chr5 37249021 37249138 + 0 NA promoter-TSS (NR_134263) promoter-TSS (NR_134263) 33 NR_134263 105374727 Hs.170993 NR_134263 LOC105374727 - uncharacterized LOC105374727 ncRNA 20067 chr3 125110834 125110938 + 0 NA intron (NM_024628, intron 8 of 13) intron (NM_024628, intron 8 of 13) 40666 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 9254 chr14 67674607 67674754 + 0 NA 5' UTR (NM_006370, exon 1 of 6) 5' UTR (NM_006370, exon 1 of 6) 205 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 9542 chr14 90396938 90397075 + 0 NA promoter-TSS (NM_006888) promoter-TSS (NM_006888) 23 NM_006888 801 Hs.282410 NM_006888 ENSG00000198668 CALM1 CALML2|CAMI|CPVT4|DD132|LQT14|PHKD|caM calmodulin 1 protein-coding 22236 chr5 13606130 13606271 + 0 NA Intergenic Intergenic 338280 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 6236 chr11 122505882 122505986 + 0 NA Intergenic Intergenic -83063 NR_137179 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 15722 chr2 68467534 68467558 + 0 NA promoter-TSS (NM_001024680) promoter-TSS (NM_001024680) -13 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 8949 chr14 49599146 49599250 + 0 NA exon (NM_152329, exon 1 of 4) exon (NM_152329, exon 1 of 4) 501 NR_037792 122769 Hs.451090 NM_152329 ENSG00000165501 LRR1 4-1BBLRR|LRR-1|PPIL5 leucine rich repeat protein 1 protein-coding 16009 chr2 99336330 99336434 + 0 NA promoter-TSS (NM_005783) promoter-TSS (NM_005783) 15 NM_005783 10190 Hs.536122 NM_005783 ENSG00000115514 TXNDC9 APACD|PHLP3 thioredoxin domain containing 9 protein-coding 2800 chr1 223845830 223845934 + 0 NA promoter-TSS (NM_001031685) promoter-TSS (NM_001031685) 90 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 17989 chr20 38748087 38748132 + 0 NA promoter-TSS (NM_024855) promoter-TSS (NM_024855) -345 NM_024855 79913 Hs.371585 NM_024855 ENSG00000101442 ACTR5 Arp5|INO80M ARP5 actin-related protein 5 homolog protein-coding 21233 chr4 22029998 22030102 + 0 NA Intergenic Intergenic -81299 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 7791 chr12 122063326 122063430 + 0 NA promoter-TSS (NR_135044) promoter-TSS (NR_135044) 88 NR_135044 100506691 Hs.536336 NR_135044 ENSG00000256546 LOC100506691 - uncharacterized LOC100506691 ncRNA 26839 chr7 112790007 112790125 + 0 NA intron (NM_001287497, intron 1 of 5) CpG 357 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 10053 chr15 48878014 48878147 + 0 NA promoter-TSS (NM_014335) promoter-TSS (NM_014335) -13 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 26021 chr7 33904917 33905021 + 0 NA promoter-TSS (NM_133468) promoter-TSS (NM_133468) 58 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 23285 chr5 136730115 136730205 + 0 NA Intergenic Intergenic -364684 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 30823 chrX 72239060 72239178 + 0 NA promoter-TSS (NM_017669) promoter-TSS (NM_017669) -111 NM_017669 54821 Hs.47558 NM_017669 ENSG00000186871 ERCC6L PICH|RAD26L ERCC excision repair 6 like, spindle assembly checkpoint helicase protein-coding 5818 chr11 88183333 88183521 + 0 NA Intergenic Intergenic 6925 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 19614 chr3 62319037 62319125 + 0 NA promoter-TSS (NR_038283) promoter-TSS (NR_038283) 38 NM_020685 57415 Hs.47166 NM_020685 ENSG00000114405 C3orf14 HT021 chromosome 3 open reading frame 14 protein-coding 2523 chr1 207304926 207305106 + 0 NA Intergenic L2b|LINE|L2 -16456 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 9972 chr15 42495549 42495693 + 0 NA 5' UTR (NM_003825, exon 1 of 8) 5' UTR (NM_003825, exon 1 of 8) 315 NM_130798 8773 Hs.511149 NM_003825 ENSG00000092531 SNAP23 HsT17016|SNAP-23|SNAP23A|SNAP23B synaptosome associated protein 23 protein-coding 4618 chr10 130138610 130138748 + 0 NA intron (NM_001199868, intron 1 of 11) intron (NM_001199868, intron 1 of 11) 2270 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 12165 chr17 17685969 17686092 + 0 NA intron (NM_030665, intron 1 of 5) L2b|LINE|L2 4557 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 12072 chr17 8190181 8190283 + 0 NA promoter-TSS (NM_017622) promoter-TSS (NM_017622) 14 NM_017622 54785 Hs.129563 NM_017622 ENSG00000196544 BORCS6 C17orf59|PRO2472 BLOC-1 related complex subunit 6 protein-coding 1257 chr1 88327814 88327932 + 0 NA Intergenic Intergenic -356271 NM_001320709 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 29843 chr9 109793374 109793478 + 0 NA intron (NM_147150, intron 1 of 9) intron (NM_147150, intron 1 of 9) 13129 NM_007203 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP2 PALM2-AKAP2 readthrough protein-coding 24168 chr6 20401638 20401790 + 0 NA promoter-TSS (NM_001949) promoter-TSS (NM_001949) -192 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 22333 chr5 31948188 31948292 + 0 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -12081 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 31 chr1 1891047 1891138 + 0 NA promoter-TSS (NM_001282538) promoter-TSS (NM_001282538) 25 NM_001282538 2782 Hs.430425 NM_002074 ENSG00000078369 GNB1 MRD42 G protein subunit beta 1 protein-coding 19280 chr3 27345524 27345628 + 0 NA intron (NM_199347, intron 5 of 24) intron (NM_199347, intron 5 of 24) 23884 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 10074 chr15 50354875 50354936 + 0 NA promoter-TSS (NR_026891) promoter-TSS (NR_026891) -26 NR_026891 55056 Hs.511316 NM_017976 ENSG00000104064 FLJ10038 - uncharacterized protein FLJ10038 ncRNA 4717 chr11 4045212 4045277 + 0 NA intron (NM_001277961, intron 3 of 11) intron (NM_001277961, intron 3 of 11) -49441 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 4093 chr10 93466296 93466400 + 0 NA intron (NM_133337, intron 1 of 52) intron (NM_133337, intron 1 of 52) 15969 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 19478 chr3 48664060 48664188 + 0 NA intron (NR_111921, intron 1 of 2) CpG 356 NR_111921 102724368 Hs.663571 NR_111921 ENSG00000228350 CELSR3-AS1 - CELSR3 antisense RNA 1 (head to head) ncRNA 19166 chr3 11846895 11846999 + 0 NA promoter-TSS (NM_001284401) promoter-TSS (NM_001284401) -28 NM_001284401 132001 Hs.475472 NM_138807 ENSG00000144559 TAMM41 C3orf31|RAM41|TAM41 TAM41 mitochondrial translocator assembly and maintenance homolog protein-coding 18027 chr20 41137461 41137536 + 0 NA promoter-TSS (NM_002660) promoter-TSS (NM_002660) -23 NM_182811 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 21807 chr4 133865754 133865858 + 0 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 335942 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 28351 chr8 102738674 102738824 + 0 NA Intergenic CpG -82847 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 4160 chr10 97518263 97518367 + 0 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) 19433 NM_024954 80019 Hs.500724 NM_024954 ENSG00000165886 UBTD1 - ubiquitin domain containing 1 protein-coding 21395 chr4 56436108 56436181 + 0 NA promoter-TSS (NM_001079524) promoter-TSS (NM_001079524) 41 NM_001079525 10606 Hs.518774 NM_006452 ENSG00000128050 PAICS ADE2|ADE2H1|AIRC|PAIS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase protein-coding 29186 chr9 71675171 71675258 + 0 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 93670 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 3336 chr10 15106510 15106688 + 0 NA 3' UTR (NM_004808, exon 12 of 12) 3' UTR (NM_004808, exon 12 of 12) -9280 NM_153244 221060 Hs.567777 NM_153244 C10orf111 bA455B2.4 chromosome 10 open reading frame 111 protein-coding 26170 chr7 44574006 44574111 + 0 NA 5' UTR (NM_001257189, exon 1 of 13) 5' UTR (NM_001257189, exon 1 of 13) 480 NM_019082 54606 Hs.654762 NM_019082 ENSG00000136271 DDX56 DDX21|DDX26|NOH61 DEAD-box helicase 56 protein-coding 17289 chr2 232697112 232697154 + 0 NA promoter-TSS (NR_103493) promoter-TSS (NR_103493) -172 NM_001103146 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 14170 chr19 13861985 13862056 + 0 NA Intergenic Intergenic -12679 NR_029613 406957 NR_029613 ENSG00000207613 MIR181C MIRN181C|mir-181c microRNA 181c ncRNA 31030 chrX 123424533 123424571 + 0 NA intron (NM_007325, intron 11 of 15) intron (NM_007325, intron 11 of 15) 240309 NM_001256743 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 28754 chr8 138936297 138936401 + 0 NA Intergenic Intergenic -22343 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 25636 chr7 6503997 6504141 + 0 NA intron (NM_001145118, intron 15 of 21) intron (NM_001145118, intron 15 of 21) -19851 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 30400 chrM 4 164 + 0 NA promoter-TSS (NR_137294) promoter-TSS (NR_137294) -564 NR_137294 8807 chr14 32076757 32076826 + 0 NA promoter-TSS (NR_027263) promoter-TSS (NR_027263) -92 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 11554 chr16 69187017 69187181 + 0 NA promoter-TSS (NM_006750) promoter-TSS (NM_006750) -48 NM_006750 6645 Hs.461117 NM_006750 ENSG00000168807 SNTB2 D16S2531E|EST25263|SNT2B2|SNT3|SNTL syntrophin beta 2 protein-coding 29380 chr9 83220832 83220995 + 0 NA Intergenic MER49|LTR|ERV1 46374 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 382 chr1 24642978 24643114 + 0 NA promoter-TSS (NM_001303448) promoter-TSS (NM_001303448) -57 NM_005839 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 3541 chr10 32413583 32413687 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR 32421 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 10955 chr16 4614859 4614963 + 0 NA promoter-TSS (NM_145253) promoter-TSS (NM_145253) 15 NM_001330467 124402 Hs.513313 NM_145253 ENSG00000153443 UBALD1 FAM100A|PP11303 UBA like domain containing 1 protein-coding 4208 chr10 100006447 100006551 + 0 NA intron (NM_015221, intron 1 of 16) MIRb|SINE|MIR 3454 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 22398 chr5 38556586 38556690 + 0 NA promoter-TSS (NR_103553) promoter-TSS (NR_103553) 8 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 14064 chr19 10106234 10106338 + 0 NA promoter-TSS (NM_001346141) promoter-TSS (NM_001346141) 63 NM_001346140 56342 Hs.14468 NM_020230 ENSG00000130810 PPAN BXDC3|SSF|SSF-1|SSF1|SSF2 peter pan homolog (Drosophila) protein-coding 11712 chr16 81096398 81096554 + 0 NA promoter-TSS (NM_004483) promoter-TSS (NM_004483) -101 NM_004483 2653 Hs.546256 NM_004483 ENSG00000140905 GCSH GCE|NKH glycine cleavage system protein H protein-coding 139 chr1 9825719 9825819 + 0 NA Intergenic Intergenic -1243 NM_014944 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 13014 chr17 75689519 75689639 + 0 NA intron (NM_013260, intron 3 of 10) intron (NM_013260, intron 3 of 10) -22390 NM_001003716 9400 Hs.632229 NM_004259 ENSG00000108469 RECQL5 RECQ5 RecQ like helicase 5 protein-coding 10775 chr15 96273828 96274043 + 0 NA intron (NR_102743, intron 5 of 7) L2b|LINE|L2 -51993 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 26419 chr7 74279694 74279878 + 0 NA Intergenic Intergenic -9689 NM_032421 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 20646 chr3 171585179 171585283 + 0 NA Intergenic Intergenic -124823 NM_001161562 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 1246 chr1 87404364 87404468 + 0 NA Intergenic Intergenic -32761 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 19160 chr3 11137466 11137617 + 0 NA intron (NM_001098213, intron 1 of 1) L2|LINE|L2 448 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 8991 chr14 51398927 51399087 + 0 NA Intergenic L2|LINE|L2 65614 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 22528 chr5 54309850 54309954 + 0 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 671 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 15305 chr2 31233913 31234026 + 0 NA promoter-TSS (NM_001321270) promoter-TSS (NM_001321270) -12 NM_001321270 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 11630 chr16 74743792 74743917 + 0 NA intron (NM_024306, intron 1 of 6) intron (NM_024306, intron 1 of 6) 30977 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 28744 chr8 134832456 134832683 + 0 NA Intergenic CpG -5500 NR_126028 552853 Hs.575612 NR_126028 ENSG00000253433 NCRNA00250 C8orf24 non-protein coding RNA 250 ncRNA 21621 chr4 99894348 99894500 + 0 NA non-coding (NR_024170, exon 1 of 6) non-coding (NR_024170, exon 1 of 6) 122 NM_001243736 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 31017 chrX 120260568 120260672 + 0 NA 3' UTR (NM_017938, exon 10 of 10) 3' UTR (NM_017938, exon 10 of 10) 9865 NM_001184742 10009 Hs.143604 NM_006777 ENSG00000177485 ZBTB33 ZNF-kaiso|ZNF348 zinc finger and BTB domain containing 33 protein-coding 23701 chr5 170331358 170331462 + 0 NA promoter-TSS (NR_026945) promoter-TSS (NR_026945) 17 NR_108025 257358 Hs.249689 NM_001025454 LINC01366 - long intergenic non-protein coding RNA 1366 ncRNA 16556 chr2 161244673 161244777 + 0 NA promoter-TSS (NR_110164) promoter-TSS (NR_110164) -14 NR_110163 100996579 Hs.660929 NR_110163 ENSG00000227403 LINC01806 - long intergenic non-protein coding RNA 1806 ncRNA 27175 chr7 144407413 144407463 + 0 NA intron (NM_001080413, intron 1 of 9) intron (NM_001080413, intron 1 of 9) 2789 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 16195 chr2 118242324 118242419 + 0 NA Intergenic Intergenic -55985 NR_144530 100506797 Hs.116176 NR_144530 LOC100506797 - uncharacterized LOC100506797 ncRNA 178 chr1 12230003 12230107 + 0 NA promoter-TSS (NM_015378) promoter-TSS (NM_015378) 16 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D - vacuolar protein sorting 13 homolog D protein-coding 3444 chr10 24706623 24706727 + 0 NA intron (NM_020824, intron 2 of 25) intron (NM_020824, intron 2 of 25) 16993 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 11965 chr17 4710429 4710434 + 0 NA promoter-TSS (NM_001257329) promoter-TSS (NM_001257329) -63 NM_004313 409 Hs.435811 NM_004313 ENSG00000141480 ARRB2 ARB2|ARR2|BARR2 arrestin beta 2 protein-coding 10112 chr15 52179354 52179509 + 0 NA promoter-TSS (NR_102751) promoter-TSS (NR_102751) 534 NM_006578 10681 Hs.155090 NM_006578 ENSG00000069966 GNB5 GB5|IDDCA|LADCI G protein subunit beta 5 protein-coding 9807 chr15 29921274 29921361 + 0 NA intron (NM_001301025, intron 2 of 28).2 L2|LINE|L2 47482 NM_001301025 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 1974 chr1 164683454 164683558 + 0 NA intron (NM_001204963, intron 2 of 8) MIRc|SINE|MIR 91135 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 5702 chr11 77560798 77560948 + 0 NA Intergenic FordPrefect_a|DNA|hAT-Tip100 -10216 NR_130930 646029 Hs.609654 NM_001039908 LOC646029 - uncharacterized LOC646029 ncRNA 4350 chr10 110665116 110665220 + 0 NA intron (NM_001134363, intron 1 of 13) AluJr|SINE|Alu 20771 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 10150 chr15 56243881 56243985 + 0 NA promoter-TSS (NM_022841) promoter-TSS (NM_022841) -648 NM_022841 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 20390 chr3 150469606 150469710 + 0 NA Intergenic Intergenic 61323 NM_014779 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 28728 chr8 133375599 133375724 + 0 NA Intergenic Intergenic -78357 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 13883 chr19 2042241 2042377 + 0 NA intron (NM_199054, intron 10 of 13) CpG-13142 8935 NM_199054 2872 Hs.515032 NM_017572 ENSG00000099875 MKNK2 GPRK7|MNK2 MAP kinase interacting serine/threonine kinase 2 protein-coding 2807 chr1 224183094 224183198 + 0 NA promoter-TSS (NM_001321541) promoter-TSS (NM_001321541) -62 NM_001321541 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 24560 chr6 42294874 42294978 + 0 NA intron (NM_001297573, intron 4 of 17) intron (NM_001297573, intron 4 of 17) -77031 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 27163 chr7 143318826 143318939 + 0 NA intron (NM_000083, intron 1 of 22) intron (NM_000083, intron 1 of 22) 2756 NR_046453 1180 Hs.121483 NM_000083 ENSG00000188037 CLCN1 CLC1 chloride voltage-gated channel 1 protein-coding 5672 chr11 74748720 74748869 + 0 NA promoter-TSS (NM_001098638) promoter-TSS (NM_001098638) -74 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 21431 chr4 70902270 70902374 + 0 NA promoter-TSS (NM_001244767) promoter-TSS (NM_001244767) -18 NM_173468 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 27950 chr8 65484584 65484688 + 0 NA Intergenic Intergenic 78030 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 28708 chr8 132321517 132321530 + 0 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 125739 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 21235 chr4 22190954 22191058 + 0 NA Intergenic L2c|LINE|L2 148660 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 716 chr1 41342179 41342310 + 0 NA Intergenic Intergenic -19687 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 26008 chr7 33063089 33063223 + 0 NA promoter-TSS (NM_001002009) promoter-TSS (NM_001002009) -359 NM_001002010 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 30307 chr9 133082108 133082178 + 0 NA promoter-TSS (NR_001275) promoter-TSS (NR_001275) -396 NR_001275 1057 Hs.654361 NR_001275 ENSG00000170827 CELP CELL|cell1|cell2|cell3 carboxyl ester lipase pseudogene pseudo 5294 chr11 58578954 58579058 + 0 NA promoter-TSS (NM_001143995) promoter-TSS (NM_001143995) -108 NR_024091 386607 Hs.524920 NM_170768 ZFP91-CNTF - ZFP91-CNTF readthrough (NMD candidate) ncRNA 28827 chr8 143986407 143986546 + 0 NA promoter-TSS (NM_001317895) promoter-TSS (NM_001317895) -5 NR_134234 84875 Hs.348609 NM_032789 ENSG00000178685 PARP10 ARTD10 poly(ADP-ribose) polymerase family member 10 protein-coding 11706 chr16 80619950 80620054 + 0 NA intron (NM_152342, intron 4 of 6) LTR84b|LTR|ERVL -47194 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 19097 chr3 5013349 5013484 + 0 NA Intergenic Intergenic -33455 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 13521 chr18 48050381 48050510 + 0 NA intron (NM_001318841, intron 3 of 4) intron (NM_001318841, intron 3 of 4) 86864 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 4169 chr10 97649191 97649255 + 0 NA intron (NM_018425, intron 1 of 8) intron (NM_018425, intron 1 of 8) 8537 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 5607 chr11 70233592 70233684 + 0 NA Intergenic MER113|DNA|hAT-Charlie 30475 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 30265 chr9 130866518 130866668 + 0 NA intron (NM_005157, intron 4 of 10) intron (NM_005157, intron 4 of 10) 30219 NM_198180 347148 Hs.660704 NM_198180 ENSG00000188710 QRFP 26RFa|P518 pyroglutamylated RFamide peptide protein-coding 25311 chr6 149546048 149546215 + 0 NA promoter-TSS (NM_139126) promoter-TSS (NM_139126) -29 NM_139126 85313 Hs.744238 NM_139126 ENSG00000131013 PPIL4 HDCME13P peptidylprolyl isomerase like 4 protein-coding 6344 chr11 129643535 129643587 + 0 NA Intergenic Intergenic -26292 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 10329 chr15 67105716 67105820 + 0 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -19948 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 453 chr1 27366981 27367080 + 0 NA promoter-TSS (NM_001297609) promoter-TSS (NM_001297609) -164 NM_001297609 9064 Hs.194694 NM_004672 ENSG00000142733 MAP3K6 ASK2|MAPKKK6|MEKK6 mitogen-activated protein kinase kinase kinase 6 protein-coding 1460 chr1 108963335 108963472 + 0 NA promoter-TSS (NM_001048210) promoter-TSS (NM_001048210) 96 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 27771 chr8 47669276 47669401 + 0 NA intron (NM_001282919, intron 10 of 18) intron (NM_001282919, intron 10 of 18) 68826 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 13061 chr17 77542904 77543008 + 0 NA Intergenic Intergenic -3985 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 10308 chr15 66386742 66386898 + 0 NA promoter-TSS (NM_002755) promoter-TSS (NM_002755) -53 NM_002755 5604 Hs.145442 NM_002755 ENSG00000169032 MAP2K1 CFC3|MAPKK1|MEK1|MKK1|PRKMK1 mitogen-activated protein kinase kinase 1 protein-coding 12664 chr17 50161561 50161703 + 0 NA Intergenic CpG -4353 NM_000023 6442 Hs.463412 NM_000023 ENSG00000108823 SGCA 50DAG|ADL|DAG2|DMDA2|LGMD2D|SCARMD1|adhalin sarcoglycan alpha protein-coding 28194 chr8 93390483 93390531 + 0 NA intron (NR_033858, intron 9 of 10) intron (NR_033858, intron 9 of 10) -223657 NM_001242668 389676 Hs.386711 NM_001242668 C8orf87 - chromosome 8 open reading frame 87 protein-coding 14478 chr19 41706753 41706869 + 0 NA Intergenic Intergenic -1774 NM_001308398 1048 Hs.709196 NM_004363 ENSG00000105388 CEACAM5 CD66e|CEA carcinoembryonic antigen related cell adhesion molecule 5 protein-coding 595 chr1 34696390 34696494 + 0 NA Intergenic L2a|LINE|L2 -26748 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 30124 chr9 126781892 126781953 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -23084 NM_014007 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 24621 chr6 45587386 45587490 + 0 NA Intergenic Intergenic 164861 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 21559 chr4 87422658 87422678 + 0 NA promoter-TSS (NM_001248011) promoter-TSS (NM_001248011) 71 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 13928 chr19 3500855 3501009 + 0 NA promoter-TSS (NM_031304) promoter-TSS (NM_031304) 8 NM_001145165 83475 Hs.515064 NM_031304 ENSG00000129932 DOHH HLRC1|hDOHH deoxyhypusine hydroxylase/monooxygenase protein-coding 6996 chr12 50532717 50532831 + 0 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 27789 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 11308 chr16 48610220 48610320 + 0 NA promoter-TSS (NM_153029) promoter-TSS (NM_153029) -61 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 11790 chr16 85520926 85521060 + 0 NA Intergenic Intergenic -90430 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 9279 chr14 68819421 68819449 + 0 NA Intergenic Intergenic -23192 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 13568 chr18 50266473 50266623 + 0 NA promoter-TSS (NM_145020) promoter-TSS (NM_145020) -26 NM_145020 220136 Hs.658630 NM_145020 ENSG00000172361 CFAP53 CCDC11|HTX6 cilia and flagella associated protein 53 protein-coding 21641 chr4 102665598 102665702 + 0 NA intron (NM_005908, intron 10 of 16) intron (NM_005908, intron 10 of 16) 95344 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 29612 chr9 95317316 95317467 + 0 NA promoter-TSS (NM_001243743) promoter-TSS (NM_001243743) -137 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC Fanconi anemia complementation group C protein-coding 9550 chr14 90681989 90682093 + 0 NA intron (NM_001320421, intron 7 of 20) intron (NM_001320421, intron 7 of 20) -15292 NR_135190 105370622 Hs.662373 NR_135190 ENSG00000258716 LOC105370622 - uncharacterized LOC105370622 ncRNA 4015 chr10 85642852 85642993 + 0 NA intron (NM_017551, intron 13 of 15) intron (NM_017551, intron 13 of 15) 65191 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 24111 chr6 16722133 16722206 + 0 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) -38969 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 30880 chrX 100994539 100994643 + 0 NA Intergenic Intergenic 24883 NR_103708 392509 Hs.147237 NM_001162491 ENSG00000174225 ARL13A ARL13|dJ341D10.2 ADP ribosylation factor like GTPase 13A protein-coding 5487 chr11 65607180 65607305 + 0 NA intron (NM_002419, intron 5 of 9) CpG 7007 NM_002419 4296 Hs.502872 NM_002419 ENSG00000173327 MAP3K11 MEKK11|MLK-3|MLK3|PTK1|SPRK mitogen-activated protein kinase kinase kinase 11 protein-coding 7021 chr12 52164097 52164163 + 0 NA Intergenic Intergenic 27870 NM_182507 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 17101 chr2 218298126 218298215 + 0 NA intron (NM_015488, intron 2 of 9) intron (NM_015488, intron 2 of 9) -5593 NM_001321435 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 31010 chrX 119606375 119606525 + 0 NA promoter-TSS (NM_001173487) promoter-TSS (NM_001173487) -567 NM_001173487 55922 Hs.437084 NM_017544 ENSG00000186416 NKRF ITBA4|NRF NFKB repressing factor protein-coding 8881 chr14 36129307 36129411 + 0 NA intron (NR_073454, intron 1 of 2) LTR16A1|LTR|ERVL 47292 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) ncRNA 21969 chr4 163494560 163494601 + 0 NA promoter-TSS (NM_018352) promoter-TSS (NM_018352) 59 NM_018352 55319 Hs.267446 NM_018352 ENSG00000198498 TMA16 C4orf43 translation machinery associated 16 homolog protein-coding 4365 chr10 112383269 112383328 + 0 NA intron (NM_016234, intron 1 of 20) AluJo|SINE|Alu 7100 NM_016234 51703 Hs.11638 NM_016234 ENSG00000197142 ACSL5 ACS2|ACS5|FACL5 acyl-CoA synthetase long-chain family member 5 protein-coding 6970 chr12 49265559 49265663 + 0 NA intron (NM_032704, intron 1 of 3) intron (NM_032704, intron 1 of 3) 612 NM_032704 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 10530 chr15 80072401 80072554 + 0 NA promoter-TSS (NM_001242915) promoter-TSS (NM_001242915) -84 NM_001242915 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 16884 chr2 197615136 197615266 + 0 NA intron (NM_144629, intron 7 of 8) intron (NM_144629, intron 7 of 8) 60659 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 26888 chr7 116930621 116930725 + 0 NA Intergenic Intergenic -22654 NM_018412 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 8566 chr13 106472165 106472408 + 0 NA Intergenic Intergenic 62754 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 27107 chr7 140002356 140002460 + 0 NA intron (NM_030984, intron 9 of 11) MIR3|SINE|MIR 61313 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 20399 chr3 150743589 150743734 + 0 NA intron (NM_005067, intron 1 of 1) intron (NM_005067, intron 1 of 1) -4676 NR_121657 101928105 NR_121657 LOC101928105 - uncharacterized LOC101928105 ncRNA 22302 chr5 18553412 18553516 + 0 NA Intergenic LTR49-int|LTR|ERV1 746190 NR_134287 646241 Hs.407197 NR_134286 LOC646241 - uncharacterized LOC646241 ncRNA 21566 chr4 88456869 88457017 + 0 NA promoter-TSS (NM_016323) promoter-TSS (NM_016323) -174 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 20089 chr3 126911511 126911641 + 0 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -77018 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 24081 chr6 14001676 14001801 + 0 NA Intergenic Intergenic 76545 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 16576 chr2 163626763 163626899 + 0 NA intron (NM_001321825, intron 1 of 1) MER41B|LTR|ERV1 109176 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 6908 chr12 44876361 44876465 + 0 NA promoter-TSS (NM_001145109) promoter-TSS (NM_001145109) 51 NM_001145108 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 30432 chrX 318132 318211 + 0 NA promoter-TSS (NR_027232) promoter-TSS (NR_027232) 648 NM_012227 8225 Hs.437145 NM_012227 ENSG00000178605 GTPBP6 PGPL GTP binding protein 6 (putative) protein-coding 6110 chr11 113875483 113875587 + 0 NA promoter-TSS (NM_001346263) promoter-TSS (NM_001346263) 35 NM_001346259 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 23801 chr5 178130931 178130986 + 0 NA promoter-TSS (NM_001288794) promoter-TSS (NM_001288794) -3 NM_022762 64777 Hs.27222 NM_022762 ENSG00000145916 RMND5B GID2|GID2B required for meiotic nuclear division 5 homolog B protein-coding 3843 chr10 70656702 70656806 + 0 NA Intergenic MIR3|SINE|MIR -15752 NM_139155 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 18468 chr21 31354646 31354739 + 0 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 204285 NM_003253 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 12699 chr17 51372737 51372864 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR 36085 NR_122104 440446 Hs.626751 NR_122104 ENSG00000225860 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 18932 chr22 40499330 40499434 + 0 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -22418 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 LOC101927257 - uncharacterized LOC101927257 ncRNA 22658 chr5 67011281 67011284 + 0 NA intron (NM_001290227, intron 2 of 25) intron (NM_001290227, intron 2 of 25) 6662 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 10221 chr15 60398004 60398209 + 0 NA promoter-TSS (NM_001002857) promoter-TSS (NM_001002857) -120 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 27392 chr8 11515994 11516098 + 0 NA intron (NM_001330465, intron 1 of 11) L1MB3|LINE|L1 22034 NM_001715 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 21306 chr4 39639024 39639128 + 0 NA promoter-TSS (NM_001317896) promoter-TSS (NM_001317896) -78 NM_001317896 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 12022 chr17 7141988 7142057 + 0 NA Intergenic LTR8|LTR|ERV1 -27211 NM_080913 433 Hs.654440 NM_001181 ENSG00000161944 ASGR2 ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2 asialoglycoprotein receptor 2 protein-coding 14007 chr19 6590884 6591014 + 0 NA exon (NM_001252, exon 1 of 3) exon (NM_001252, exon 1 of 3) 203 NM_001330332 970 Hs.501497 NM_001252 ENSG00000125726 CD70 CD27-L|CD27L|CD27LG|TNFSF7|TNLG8A CD70 molecule protein-coding 10641 chr15 88204735 88204839 + 0 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) 1187 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 4030 chr10 86968394 86968561 + 0 NA promoter-TSS (NM_006829) promoter-TSS (NM_006829) 46 NM_006829 10974 Hs.642660 NM_006829 ENSG00000148671 ADIRF AFRO|APM2|C10orf116|apM-2 adipogenesis regulatory factor protein-coding 9168 chr14 61965113 61965261 + 0 NA Intergenic L1M4|LINE|L1 -30636 NM_031914 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r|yt14r synaptotagmin 16 protein-coding 26001 chr7 32942479 32942482 + 0 NA intron (NR_003500, intron 1 of 5) CpG 690 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - retinitis pigmentosa 9 pseudogene pseudo 28609 chr8 126327296 126327469 + 0 NA non-coding (NR_125421, exon 2 of 3) non-coding (NR_125421, exon 2 of 3) 1887 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 27119 chr7 140647173 140647277 + 0 NA Intergenic Intergenic -5739 NM_001318053 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 23535 chr5 151202927 151203083 + 0 NA intron (NM_015621, intron 2 of 8) MIR|SINE|MIR 21088 NM_015621 26112 Hs.655336 NM_015621 ENSG00000198624 CCDC69 - coiled-coil domain containing 69 protein-coding 20652 chr3 171811766 171811814 + 0 NA Intergenic Intergenic -1296 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 - phospholipase D1 protein-coding 5463 chr11 65135094 65135241 + 0 NA promoter-TSS (NM_172230) promoter-TSS (NM_172230) -635 NM_172230 84447 Hs.75859 NM_032431 ENSG00000162298 SYVN1 DER3|HRD1 synoviolin 1 protein-coding 6998 chr12 50619353 50619432 + 0 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 114407 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 18305 chr20 56875076 56875236 + 0 NA Intergenic Intergenic 245854 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 14786 chr19 54464118 54464268 + 0 NA promoter-TSS (NM_001301782) promoter-TSS (NM_001301782) -482 NM_198988 94059 Hs.590976 NM_198988 ENSG00000275183 LENG9 - leukocyte receptor cluster member 9 protein-coding 10899 chr16 2836057 2836145 + 0 NA Intergenic Intergenic 5929 NM_145252 124220 Hs.105887 NM_145252 ENSG00000162078 ZG16B EECP|HRPE773|JCLN2|PAUF|PRO1567 zymogen granule protein 16B protein-coding 2014 chr1 167220518 167220663 + 0 NA promoter-TSS (NM_001198786) promoter-TSS (NM_001198786) -239 NM_001198786 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 15944 chr2 88659078 88659154 + 0 NA Intergenic Intergenic 31287 NR_135540 101928403 Hs.434326 NR_135540 ENSG00000234028 LOC101928403 - uncharacterized LOC101928403 ncRNA 15617 chr2 60756121 60756304 + 0 NA promoter-TSS (NM_022894) promoter-TSS (NM_022894) -18 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 14322 chr19 29606139 29606293 + 0 NA promoter-TSS (NM_006627) promoter-TSS (NM_006627) -47 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 9283 chr14 68979360 68979500 + 0 NA promoter-TSS (NM_001130004) promoter-TSS (NM_001130004) -64 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 6641 chr12 13101338 13101355 + 0 NA intron (NM_001206842, intron 1 of 5) CpG 2350 NM_001080555 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 5140 chr11 34620813 34620957 + 0 NA promoter-TSS (NM_001206615) promoter-TSS (NM_001206615) -156 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 29649 chr9 97705625 97705729 + 0 NA Intergenic Intergenic -8268 NM_000380 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 5182 chr11 36702699 36702850 + 0 NA Intergenic Intergenic -104495 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 23310 chr5 138575670 138575803 + 0 NA promoter-TSS (NM_004134) promoter-TSS (NM_004134) -107 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 1342 chr1 94646440 94646544 + 0 NA Intergenic L2c|LINE|L2 99408 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 14397 chr19 36687450 36687628 + 0 NA promoter-TSS (NM_001322919) promoter-TSS (NM_001322919) -73 NM_001322916 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 2457 chr1 204319587 204319691 + 0 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 40290 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 4359 chr10 110919292 110919396 + 0 NA promoter-TSS (NM_001195306) promoter-TSS (NM_001195306) 22 NM_001195304 92482 Hs.232543 NM_001195304 ENSG00000214413 BBIP1 BBIP10|BBS18|NCRNA00081|bA348N5.3 BBSome interacting protein 1 protein-coding 7651 chr12 110502048 110502166 + 0 NA promoter-TSS (NM_016226) promoter-TSS (NM_016226) 33 NR_104099 51699 Hs.600114 NM_016226 ENSG00000111237 VPS29 DC15|DC7|PEP11 VPS29, retromer complex component protein-coding 26617 chr7 94395527 94395631 + 0 NA intron (NM_000089, intron 1 of 51) intron (NM_000089, intron 1 of 51) 1018 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 OI4 collagen type I alpha 2 chain protein-coding 29392 chr9 83921366 83921550 + 0 NA promoter-TSS (NM_001271927) promoter-TSS (NM_001271927) 7 NM_001271927 55582 Hs.697514 NM_017576 ENSG00000165115 KIF27 - kinesin family member 27 protein-coding 28337 chr8 101446305 101446357 + 0 NA Intergenic Eulor5A|DNA?|DNA? -46108 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 15645 chr2 63219239 63219385 + 0 NA intron (NR_122106, intron 8 of 11) intron (NR_122106, intron 8 of 11) -99770 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 3476 chr10 27242092 27242241 + 0 NA promoter-TSS (NM_001042473) promoter-TSS (NM_001042473) -27 NM_001301253 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 8619 chr13 110706348 110706452 + 0 NA promoter-TSS (NM_024537) promoter-TSS (NM_024537) -220 NM_024537 79587 Hs.508725 NM_024537 ENSG00000134905 CARS2 COXPD27|cysRS cysteinyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 26372 chr7 70299262 70299366 + 0 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 700395 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 21292 chr4 38188647 38188751 + 0 NA Intergenic Intergenic 68745 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 20019 chr3 121943620 121943755 + 0 NA 3' UTR (NM_001145998, exon 21 of 21) 3' UTR (NM_001145998, exon 21 of 21) 49363 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 20952 chr3 190513923 190514056 + 0 NA promoter-TSS (NM_001167930) promoter-TSS (NM_001167930) -62 NM_001167928 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 9116 chr14 59358199 59358346 + 0 NA intron (NM_014992, intron 20 of 24) intron (NM_014992, intron 20 of 24) 94831 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 30692 chrX 48761914 48762059 + 0 NA intron (NM_001080489, intron 1 of 3) intron (NM_001080489, intron 1 of 3) 236 NM_001080489 392465 Hs.437539 NM_001080489 ENSG00000171433 GLOD5 - glyoxalase domain containing 5 protein-coding 3095 chr1 243255445 243255459 + 0 NA promoter-TSS (NM_006642).2 promoter-TSS (NM_006642).2 -46 NM_014812 9859 Hs.533635 NM_014812 ENSG00000143702 CEP170 FAM68A|KAB|KIAA0470 centrosomal protein 170 protein-coding 3617 chr10 43408787 43408973 + 0 NA promoter-TSS (NM_001098205) promoter-TSS (NM_001098205) 4 NM_001098205 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 10969 chr16 4945822 4945926 + 0 NA Intergenic Intergenic -8739 NM_002705 5493 Hs.192233 NM_002705 ENSG00000118898 PPL - periplakin protein-coding 18376 chr20 62122119 62122236 + 0 NA promoter-TSS (NM_144703) promoter-TSS (NM_144703) -284 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 27789 chr8 48696346 48696533 + 0 NA intron (NR_105002, intron 3 of 3) intron (NR_105002, intron 3 of 3) 38872 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 16604 chr2 166239737 166239841 + 0 NA intron (NM_002977, intron 19 of 26) intron (NM_002977, intron 19 of 26) -90657 NM_001202435 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 25090 chr6 123091192 123091219 + 0 NA Intergenic Intergenic 95234 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 329 chr1 21869877 21870027 + 0 NA intron (NM_001291860, intron 33 of 96) intron (NM_001291860, intron 33 of 96) 57687 NM_001013693 401944 Hs.745158 NM_001013693 ENSG00000187942 LDLRAD2 - low density lipoprotein receptor class A domain containing 2 protein-coding 24161 chr6 19867354 19867469 + 0 NA Intergenic Intergenic 30041 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 21698 chr4 110362040 110362112 + 0 NA Intergenic Intergenic -113997 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 16172 chr2 113199203 113199296 + 0 NA intron (NM_012455, intron 16 of 16) CpG-16441 25266 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 525 chr1 31476982 31477101 + 0 NA Intergenic L1PBa|LINE|L1 -23044 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LINC01225 - long intergenic non-protein coding RNA 1225 pseudo 23452 chr5 147509985 147510089 + 0 NA promoter-TSS (NM_001197294) promoter-TSS (NM_001197294) 19 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 23386 chr5 141969066 141969200 + 0 NA promoter-TSS (NM_183401) promoter-TSS (NM_183401) -14 NM_183401 9604 Hs.483616 NM_004290 ENSG00000013561 RNF14 ARA54|HFB30|HRIHFB2038|TRIAD2 ring finger protein 14 protein-coding 787 chr1 44739676 44739813 + 0 NA promoter-TSS (NM_001297655) promoter-TSS (NM_001297655) -74 NM_006845 11004 Hs.720061 NM_006845 ENSG00000142945 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 27 chr1 1659121 1659174 + 0 NA promoter-TSS (NM_001291345) promoter-TSS (NM_001291345) -50 NM_033487 984 Hs.651228 NM_001787 ENSG00000248333 CDK11B CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1 cyclin dependent kinase 11B protein-coding 3909 chr10 73966132 73966277 + 0 NA Intergenic Intergenic -31910 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 30699 chrX 48958396 48958567 + 0 NA promoter-TSS (NM_001136157) promoter-TSS (NM_001136157) -95 NM_001136159 55593 Hs.496098 NM_017602 ENSG00000068308 OTUD5 DUBA OTU deubiquitinase 5 protein-coding 23793 chr5 177497615 177497816 + 0 NA promoter-TSS (NM_005451) promoter-TSS (NM_005451) -110 NR_103804 9260 Hs.533040 NM_005451 ENSG00000196923 PDLIM7 LMP1|LMP3 PDZ and LIM domain 7 protein-coding 17044 chr2 212713070 212713174 + 0 NA Intergenic L2c|LINE|L2 -82209 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 1866 chr1 157045758 157045862 + 0 NA promoter-TSS (NM_014784) promoter-TSS (NM_014784) -440 NM_014784 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 29862 chr9 111040677 111040736 + 0 NA Intergenic Intergenic -2621 NM_057159 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 3736 chr10 60198862 60198966 + 0 NA intron (NM_020987, intron 13 of 43) intron (NM_020987, intron 13 of 43) -57898 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 8825 chr14 33842391 33842652 + 0 NA Intergenic Intergenic 108305 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 29136 chr9 69175230 69175278 + 0 NA intron (NM_201629, intron 1 of 20) LFSINE_Vert|SINE|tRNA 1199 NM_004817 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 3459 chr10 25068258 25068387 + 0 NA Intergenic Intergenic -6043 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 20627 chr3 170310247 170310371 + 0 NA Intergenic Intergenic -47376 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 2115 chr1 177228796 177228883 + 0 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 57451 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 4703 chr11 3000596 3000727 + 0 NA TTS (NM_001751) TTS (NM_001751) -8284 NM_005969 4676 Hs.731784 NM_005969 ENSG00000205531 NAP1L4 NAP1L4b|NAP2|NAP2L|hNAP2 nucleosome assembly protein 1 like 4 protein-coding 6512 chr12 6363931 6364015 + 0 NA intron (NM_001038, intron 2 of 12) CpG-5265 11251 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 26067 chr7 36962585 36962671 + 0 NA intron (NM_001206482, intron 16 of 21) intron (NM_001206482, intron 16 of 21) 22484 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 7112 chr12 55966754 55966858 + 0 NA promoter-TSS (NM_001200053) promoter-TSS (NM_001200053) 37 NM_001798 1017 Hs.19192 NM_001798 ENSG00000123374 CDK2 CDKN2|p33(CDK2) cyclin dependent kinase 2 protein-coding 21693 chr4 109815377 109815542 + 0 NA promoter-TSS (NM_018983) promoter-TSS (NM_018983) -51 NM_032993 54433 Hs.69851 NM_018983 ENSG00000109534 GAR1 NOLA1 GAR1 ribonucleoprotein protein-coding 4489 chr10 119872201 119872305 + 0 NA intron (NM_001256379, intron 1 of 15) CpG 630 NM_001256378 79892 Hs.124246 NM_024834 ENSG00000197771 MCMBP C10orf119|MCM-BP minichromosome maintenance complex binding protein protein-coding 20815 chr3 184250372 184250519 + 0 NA promoter-TSS (NM_001006941) promoter-TSS (NM_001006941) 788 NM_032331 9718 Hs.146161 NM_014693 ENSG00000145194 ECE2 - endothelin converting enzyme 2 protein-coding 21093 chr3 198080715 198080819 + 0 NA promoter-TSS (NR_003291) promoter-TSS (NR_003291) -96 NR_003291 348840 Hs.512227 NM_182631 ENSG00000226435 ANKRD18DP - ankyrin repeat domain 18D, pseudogene pseudo 18392 chr20 62862028 62862164 + 0 NA promoter-TSS (NM_006602) promoter-TSS (NM_006602) -333 NM_001301726 10732 Hs.126248 NM_006602 ENSG00000101190 TCFL5 CHA|E2BP-1|Figlb|SOSF1|bHLHe82 transcription factor like 5 protein-coding 21350 chr4 49147262 49147416 + 0 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 160697 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 16488 chr2 156181400 156181504 + 0 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 73479 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 16391 chr2 138615377 138615481 + 0 NA Intergenic Intergenic 113649 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 769 chr1 43858322 43858426 + 0 NA intron (NR_073021, intron 6 of 9) intron (NR_073021, intron 6 of 9) 19752 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 17650 chr20 13995379 13995533 + 0 NA promoter-TSS (NR_073207) promoter-TSS (NR_073207) -44 NM_080676 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133 MACRO domain containing 2 protein-coding 8956 chr14 49768071 49768175 + 0 NA promoter-TSS (NM_014315) promoter-TSS (NM_014315) 54 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 15706 chr2 67290152 67290278 + 0 NA TTS (NR_110564) TTS (NR_110564) -74896 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 5549 chr11 67248670 67248782 + 0 NA intron (NM_001256405, intron 5 of 9) intron (NM_001256405, intron 5 of 9) 8691 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 803 chr1 45550695 45550800 + 0 NA promoter-TSS (NM_001202414) promoter-TSS (NM_001202414) -36 NM_006066 10327 Hs.474584 NM_006066 ENSG00000117448 AKR1A1 ALDR1|ALR|ARM|DD3|HEL-S-6 aldo-keto reductase family 1 member A1 protein-coding 30887 chrX 101617910 101618014 + 0 NA promoter-TSS (NR_033669) promoter-TSS (NR_033669) 39 NM_001009584 54470 Hs.83530 NM_019007 ENSG00000198960 ARMCX6 GASP10 armadillo repeat containing, X-linked 6 protein-coding 17034 chr2 211329723 211329767 + 0 NA Intergenic MER84|LTR|ERV1 712174 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 30642 chrX 44012812 44012916 + 0 NA Intergenic Intergenic -39189 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND NDP, norrin cystine knot growth factor protein-coding 26140 chr7 42912010 42912140 + 0 NA promoter-TSS (NM_001099858) promoter-TSS (NM_001099858) 15 NM_001099858 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 4133 chr10 96090157 96090266 + 0 NA promoter-TSS (NR_038444) promoter-TSS (NR_038444) 24 NR_038444 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 18957 chr22 41468981 41469126 + 0 NA promoter-TSS (NM_032758) promoter-TSS (NM_032758) -72 NM_001098 50 Hs.643610 NM_001098 ENSG00000100412 ACO2 ACONM|HEL-S-284|ICRD|OCA8|OPA9 aconitase 2 protein-coding 18526 chr21 37564495 37564623 + 0 NA Intergenic Intergenic 144260 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 14890 chr2 38252 38408 + 0 NA TTS (NM_001077710) TTS (NM_001077710) 8258 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 18184 chr20 50430681 50430822 + 0 NA Intergenic Intergenic -79570 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 27620 chr8 28617147 28617203 + 0 NA Intergenic Intergenic 84289 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 29972 chr9 116087302 116087369 + 0 NA Intergenic Intergenic -66457 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 5587 chr11 69080492 69080591 + 0 NA intron (NM_139075, intron 17 of 24) intron (NM_139075, intron 17 of 24) -2635 NR_036122 100422846 NR_036122 ENSG00000265539 MIR3164 - microRNA 3164 ncRNA 6004 chr11 106281598 106281702 + 0 NA Intergenic MER117|DNA|hAT-Charlie 30243 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 24056 chr6 12573344 12573448 + 0 NA Intergenic Intergenic -143260 NM_001242648 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 15449 chr2 43596022 43596141 + 0 NA promoter-TSS (NR_073394) promoter-TSS (NR_073394) -35 NM_001345925 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA, armadillo repeat containing protein-coding 12138 chr17 16378802 16378906 + 0 NA Intergenic Intergenic -1939 NM_001281716 7314 Hs.356190 NM_018955 ENSG00000170315 UBB HEL-S-50 ubiquitin B protein-coding 3085 chr1 241848169 241848171 + 0 NA promoter-TSS (NM_001319224) promoter-TSS (NM_001319224) -21 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 12999 chr17 75183098 75183137 + 0 NA promoter-TSS (NM_006937) promoter-TSS (NM_006937) -114 NM_006937 6613 Hs.380973 NM_006937 ENSG00000188612 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin-like modifier 2 protein-coding 6503 chr12 6286937 6287053 + 0 NA Intergenic Intergenic -23441 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 20097 chr3 127598247 127598400 + 0 NA promoter-TSS (NR_073375) promoter-TSS (NR_073375) -34 NM_004526 4171 Hs.477481 NM_004526 ENSG00000073111 MCM2 BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19 minichromosome maintenance complex component 2 protein-coding 19534 chr3 51995908 51996046 + 0 NA promoter-TSS (NM_000992) promoter-TSS (NM_000992) -35 NM_000992 6159 Hs.425125 NM_000992 ENSG00000162244 RPL29 HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370 ribosomal protein L29 protein-coding 15184 chr2 24972058 24972087 + 0 NA promoter-TSS (NM_001198559) promoter-TSS (NM_001198559) 22 NM_016544 51277 Hs.434993 NM_016544 ENSG00000115137 DNAJC27 RBJ|RabJS DnaJ heat shock protein family (Hsp40) member C27 protein-coding 9810 chr15 29925615 29925719 + 0 NA intron (NM_001301025, intron 2 of 28).2 intron (NM_001301025, intron 2 of 28).2 43132 NM_001301025 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 650 chr1 37807644 37807767 + 0 NA promoter-TSS (NM_001142726) promoter-TSS (NM_001142726) -96 NM_198446 127687 Hs.532749 NM_198446 ENSG00000197982 C1orf122 ALAESM chromosome 1 open reading frame 122 protein-coding 1154 chr1 78254665 78254769 + 0 NA intron (NR_027310, intron 3 of 5) L4_A_Mam|LINE|RTE-X 25118 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 4635 chr10 132446958 132447062 + 0 NA intron (NM_173541, intron 2 of 2) intron (NM_173541, intron 2 of 2) 1800 NM_173541 170393 Hs.375059 NM_173541 C10orf91 bA432J24.4 chromosome 10 open reading frame 91 protein-coding 17562 chr20 7172022 7172100 + 0 NA intron (NR_110609, intron 5 of 7) intron (NR_110609, intron 5 of 7) 82141 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 12463 chr17 40486217 40486321 + 0 NA intron (NM_032865, intron 4 of 12) intron (NM_032865, intron 4 of 12) 15333 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 18151 chr20 48921951 48922089 + 0 NA intron (NM_006420, intron 1 of 38) CpG 282 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 29969 chr9 115996575 115996727 + 0 NA Intergenic L2b|LINE|L2 -71553 NR_024032 58483 Hs.23367 NM_021208 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 1910 chr1 160262474 160262614 + 0 NA promoter-TSS (NR_028104) promoter-TSS (NR_028104) -16 NR_028104 50717 Hs.632447 NM_015726 ENSG00000132716 DCAF8 GAN2|H326|WDR42A DDB1 and CUL4 associated factor 8 protein-coding 15935 chr2 88016940 88017071 + 0 NA Intergenic CpG -31215 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2-like and GRIP domain containing 1 protein-coding 3076 chr1 241606709 241606885 + 0 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 29133 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like, Rab escort protein 2 protein-coding 7885 chr12 130187021 130187125 + 0 NA Intergenic Intergenic 24614 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 16901 chr2 200300720 200300837 + 0 NA Intergenic Intergenic -5103 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 8633 chr13 112606415 112606571 + 0 NA Intergenic CpG -18308 NM_001286279 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 12340 chr17 33267356 33267494 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 25563 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 10845 chr16 649247 649379 + 0 NA promoter-TSS (NR_135177) promoter-TSS (NR_135177) 0 NR_135177 105371038 NR_135177 LOC105371038 - uncharacterized LOC105371038 ncRNA 9364 chr14 74019286 74019436 + 0 NA promoter-TSS (NM_001321984) promoter-TSS (NM_001321984) 5 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 3264 chr10 7687378 7687482 + 0 NA Intergenic Intergenic -15843 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 3402 chr10 22229345 22229449 + 0 NA Intergenic CpG -19414 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus-like nucleoprotein 1 protein-coding 12874 chr17 66463015 66463169 + 0 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -46238 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 6050 chr11 110337964 110338086 + 0 NA Intergenic MER41B|LTR|ERV1 -17089 NR_135100 105369486 Hs.611557 NR_135100 ENSG00000254416 LOC105369486 - uncharacterized LOC105369486 ncRNA 27102 chr7 139442060 139442250 + 0 NA Intergenic L1M7|LINE|L1 -14629 NR_033999 100129148 Hs.744449 NR_033999 LOC100129148 - uncharacterized LOC100129148 ncRNA 29539 chr9 92003796 92003900 + 0 NA Intergenic Intergenic -53686 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 26706 chr7 100545739 100545861 + 0 NA intron (NM_006076, intron 1 of 11) intron (NM_006076, intron 1 of 11) 6589 NM_006076 3268 Hs.521083 NM_006076 ENSG00000106351 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 24705 chr6 53323414 53323489 + 0 NA intron (NM_001242831, intron 1 of 2) intron (NM_001242831, intron 1 of 2) 14166 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 3501 chr10 29758007 29758111 + 0 NA Intergenic L2c|LINE|L2 -21058 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 14584 chr19 45995233 45995360 + 0 NA promoter-TSS (NM_001267723) promoter-TSS (NM_001267723) -165 NM_001267723 729440 Hs.515479 NM_001080402 ENSG00000104983 CCDC61 - coiled-coil domain containing 61 protein-coding 28445 chr8 115154826 115154965 + 0 NA Intergenic Intergenic 513117 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 23226 chr5 133240628 133240735 + 0 NA intron (NM_015082, intron 7 of 15) intron (NM_015082, intron 7 of 15) 187025 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 5226 chr11 45847292 45847443 + 0 NA promoter-TSS (NM_021117) promoter-TSS (NM_021117) -39 NM_021117 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian clock 2 protein-coding 3423 chr10 23432305 23432460 + 0 NA Intergenic Intergenic -6887 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 16471 chr2 152025974 152026110 + 0 NA intron (NM_001145798, intron 2 of 12) intron (NM_001145798, intron 2 of 12) -51956 NM_001005747 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 6798 chr12 27981985 27982028 + 0 NA Intergenic Intergenic -10023 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 25365 chr6 153167440 153167544 + 0 NA Intergenic MamSINE1|SINE|tRNA-RTE -36238 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G-protein signaling 17 protein-coding 24728 chr6 55758650 55758754 + 0 NA intron (NM_001329756, intron 4 of 4) intron (NM_001329756, intron 4 of 4) 116888 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 19387 chr3 39639463 39639567 + 0 NA Intergenic Intergenic 137449 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin-associated oligodendrocyte basic protein protein-coding 8529 chr13 102773829 102773933 + 0 NA promoter-TSS (NM_001286775) promoter-TSS (NM_001286775) -60 NM_138779 93081 Hs.398111 NM_138779 ENSG00000151287 TEX30 C13orf27 testis expressed 30 protein-coding 8773 chr14 28308924 28309028 + 0 NA Intergenic HSMAR2|DNA|TcMar-Mariner 456343 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 8167 chr13 41263805 41263909 + 0 NA promoter-TSS (NM_004294) promoter-TSS (NM_004294) -280 NM_004294 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 2408 chr1 202283513 202283616 + 0 NA intron (NM_021636, intron 6 of 17) intron (NM_021636, intron 6 of 17) 58402 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 30060 chr9 122402534 122402622 + 0 NA Intergenic Intergenic 27256 NM_001271165 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 17906 chr20 34624851 34624953 + 0 NA intron (NM_080476, intron 6 of 11) intron (NM_080476, intron 6 of 11) 52383 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 3520 chr10 31032352 31032519 + 0 NA promoter-TSS (NM_001143766) promoter-TSS (NM_001143766) -498 NM_001143767 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 23690 chr5 169593066 169593238 + 0 NA intron (NM_001329641, intron 3 of 11) intron (NM_001329641, intron 3 of 11) 9072 NM_001329640 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 30080 chr9 123998018 123998122 + 0 NA Intergenic Intergenic 11326 NR_135129 100505588 Hs.547168 NR_135129 ENSG00000236668 LOC100505588 - uncharacterized LOC100505588 ncRNA 23333 chr5 139968944 139969013 + 0 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 74321 NM_004883 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 16969 chr2 206086150 206086272 + 0 NA promoter-TSS (NM_017759) promoter-TSS (NM_017759) -29 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 10142 chr15 55907932 55908036 + 0 NA intron (NM_001329212, intron 5 of 28) intron (NM_001329212, intron 5 of 28) 9147 NM_198400 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding 27423 chr8 13267383 13267487 + 0 NA intron (NM_182643, intron 5 of 17) intron (NM_182643, intron 5 of 17) 9113 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 7218 chr12 64088526 64088630 + 0 NA intron (NM_001346201, intron 11 of 21) intron (NM_001346201, intron 11 of 21) 133718 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 8655 chr13 114226862 114227005 + 0 NA Intergenic Intergenic -7912 NM_001330101 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 26845 chr7 113118591 113118695 + 0 NA promoter-TSS (NR_024412) promoter-TSS (NR_024412) -61 NR_024412 401397 Hs.117929 NR_015442 ENSG00000214194 LINC00998 - long intergenic non-protein coding RNA 998 ncRNA 21526 chr4 83334991 83335077 + 0 NA promoter-TSS (NM_001098540) promoter-TSS (NM_001098540) 119 NM_006665 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 20593 chr3 168417112 168417261 + 0 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) -134668 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 17013 chr2 208711779 208711883 + 0 NA intron (NR_136588, intron 3 of 5) LTR37A|LTR|ERV1 169189 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 10162 chr15 57060971 57061075 + 0 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 141232 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20 transcription factor 12 protein-coding 25969 chr7 30407169 30407273 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 16336 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 25423 chr6 158869923 158870037 + 0 NA 5' UTR (NM_001302839, exon 1 of 3) 5' UTR (NM_001302839, exon 1 of 3) 113 NM_001302840 100130967 Hs.32804 NM_001195032 C6orf99 yR211F11.1 chromosome 6 open reading frame 99 protein-coding 3553 chr10 33134153 33134307 + 0 NA Intergenic Intergenic -175865 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 27043 chr7 134364741 134364900 + 0 NA Intergenic Intergenic -47745 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 15233 chr2 27380758 27380913 + 0 NA promoter-TSS (NM_001201459) promoter-TSS (NM_001201459) -91 NM_144631 130557 Hs.515872 NM_144631 ENSG00000163795 ZNF513 HMFT0656|RP58 zinc finger protein 513 protein-coding 4892 chr11 14422471 14422575 + 0 NA Intergenic Intergenic -58017 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 15454 chr2 44044345 44044486 + 0 NA Intergenic Intergenic -48410 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 2022 chr1 167721860 167721969 + 0 NA promoter-TSS (NM_001146191) promoter-TSS (NM_001146191) -36 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 23317 chr5 139293617 139293721 + 0 NA promoter-TSS (NM_018834) promoter-TSS (NM_018834) 25 NM_018834 9782 Hs.268939 NM_018834 ENSG00000015479 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 28822 chr8 143902948 143903052 + 0 NA Intergenic Intergenic -24536 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 20008 chr3 120596233 120596386 + 0 NA promoter-TSS (NM_001168331) promoter-TSS (NM_001168331) 28 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 24261 chr6 27808115 27808254 + 0 NA promoter-TSS (NM_003519) promoter-TSS (NM_003519) -15 NM_003509 8329 Hs.534035 NM_003509 ENSG00000196747 HIST1H2AI H2A/c|H2AFC histone cluster 1 H2A family member i protein-coding 19564 chr3 53570880 53570984 + 0 NA intron (NM_000720, intron 3 of 48) intron (NM_000720, intron 3 of 48) 75883 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 17454 chr20 1900483 1900587 + 0 NA intron (NM_001330728, intron 2 of 8) intron (NM_001330728, intron 2 of 8) 5355 NM_001040023 140885 Hs.581021 NM_080792 ENSG00000198053 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal regulatory protein alpha protein-coding 1122 chr1 72284653 72284757 + 0 NA Intergenic Intergenic -2111 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 29797 chr9 108270147 108270251 + 0 NA Intergenic Intergenic 585796 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 21179 chr4 11397302 11397438 + 0 NA TTS (NM_005114) TTS (NM_005114) 28543 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 14711 chr19 50025556 50025575 + 0 NA promoter-TSS (NM_001308420) promoter-TSS (NM_001308420) -17 NM_001025778 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - vaccinia related kinase 3 protein-coding 6100 chr11 113202455 113202637 + 0 NA intron (NM_001076682, intron 2 of 18) intron (NM_001076682, intron 2 of 18) 71355 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 30333 chr9 134135899 134136003 + 0 NA promoter-TSS (NM_017588) promoter-TSS (NM_017588) -137 NM_017588 11091 Hs.397638 NM_017588 ENSG00000196363 WDR5 BIG-3|CFAP89|SWD3 WD repeat domain 5 protein-coding 30007 chr9 118653100 118653204 + 0 NA Intergenic MIR|SINE|MIR 716309 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 29399 chr9 84697650 84697742 + 0 NA intron (NM_001007097, intron 2 of 12) intron (NM_001007097, intron 2 of 12) 27319 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 25316 chr6 149717971 149717988 + 0 NA non-coding (NR_134652, exon 1 of 1) non-coding (NR_134652, exon 1 of 1) 277 NM_004690 9113 Hs.549084 NM_004690 ENSG00000131023 LATS1 WARTS|wts large tumor suppressor kinase 1 protein-coding 4643 chr10 133009712 133009717 + 0 NA Intergenic Intergenic 44180 NR_046231 399829 Hs.252872 NR_046231 ENSG00000240707 LINC01168 - long intergenic non-protein coding RNA 1168 ncRNA 12205 chr17 20121701 20121805 + 0 NA intron (NM_001033553, intron 3 of 14) intron (NM_001033553, intron 3 of 14) -34241 NM_001033554 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 1053 chr1 66242791 66242946 + 0 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -89240 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 462 chr1 27659767 27659871 + 0 NA Intergenic CpG 12394 NM_022872 2537 Hs.523847 NM_002038 ENSG00000126709 IFI6 6-16|FAM14C|G1P3|IFI-6-16|IFI616 interferon alpha inducible protein 6 protein-coding 8074 chr13 31945776 31945880 + 0 NA intron (NR_027062, intron 1 of 3) intron (NR_027062, intron 1 of 3) -85472 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 11442 chr16 58452158 58452199 + 0 NA Intergenic MER34A1|LTR|ERV1 -11467 NM_020465 65009 Hs.322430 NM_020465 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 10336 chr15 67225081 67225175 + 0 NA intron (NM_001271885, intron 5 of 9) MER5B|DNA|hAT-Charlie 29608 NM_001271886 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha- and gamma-adaptin binding protein protein-coding 28668 chr8 129848973 129848992 + 0 NA intron (NM_001330612, intron 9 of 10) intron (NM_001330612, intron 9 of 10) -62094 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 6359 chr11 130159703 130159874 + 0 NA promoter-TSS (NM_021978) promoter-TSS (NM_021978) 1 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 8154 chr13 40641221 40641325 + 0 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) 25324 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 13974 chr19 5293567 5293567 + 0 NA intron (NM_130855, intron 1 of 29) CpG 47236 NM_002850 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase, receptor type S protein-coding 13588 chr18 51321876 51321980 + 0 NA Intergenic Intergenic -70114 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 10812 chr15 100721988 100722019 + 0 NA Intergenic Intergenic 119453 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 4385 chr10 113895252 113895356 + 0 NA intron (NM_198514, intron 5 of 10) L2a|LINE|L2 40672 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 - NHL repeat containing 2 protein-coding 29769 chr9 107215534 107215638 + 0 NA Intergenic Intergenic -67650 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 25880 chr7 24971442 24971547 + 0 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 8718 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 9933 chr15 40755310 40755459 + 0 NA promoter-TSS (NM_001323894) promoter-TSS (NM_001323894) -48 NM_001323897 55177 Hs.511067 NM_018145 ENSG00000137824 RMDN3 FAM82A2|FAM82C|RMD-3|RMD3|ptpip51 regulator of microtubule dynamics 3 protein-coding 29829 chr9 109321059 109321198 + 0 NA promoter-TSS (NM_019114) promoter-TSS (NM_019114) -164 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 16656 chr2 172179516 172179564 + 0 NA Intergenic Intergenic 76534 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 23274 chr5 136017183 136017287 + 0 NA Intergenic Intergenic -11660 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 5709 chr11 78139637 78139753 + 0 NA promoter-TSS (NM_001007027) promoter-TSS (NM_001007027) -42 NM_001007027 79053 Hs.503368 NM_024079 ENSG00000159063 ALG8 CDG1H ALG8, alpha-1,3-glucosyltransferase protein-coding 21892 chr4 148634643 148634792 + 0 NA Intergenic Intergenic -192197 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 15319 chr2 32063496 32063686 + 0 NA promoter-TSS (NM_199436) promoter-TSS (NM_199436) -20 NM_199436 6683 Hs.468091 NM_014946 ENSG00000021574 SPAST ADPSP|FSP2|SPG4 spastin protein-coding 22908 chr5 95727944 95728044 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -3152 NM_014899 22836 Hs.445030 NM_014899 ENSG00000164292 RHOBTB3 - Rho related BTB domain containing 3 protein-coding 27271 chr7 155797137 155797241 + 0 NA Intergenic (CCCCCAG)n|Simple_repeat|Simple_repeat 11883 NM_001310462 6469 Hs.164537 NM_000193 ENSG00000164690 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS sonic hedgehog protein-coding 10284 chr15 64841398 64841527 + 0 NA promoter-TSS (NM_001195059) promoter-TSS (NM_001195059) -421 NM_001195059 80301 Hs.709337 NM_025201 ENSG00000241839 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing O2 protein-coding 26789 chr7 106365397 106365517 + 0 NA Intergenic Intergenic -80265 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 23999 chr6 9482168 9482284 + 0 NA Intergenic Intergenic 830017 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 15214 chr2 26785819 26785977 + 0 NA promoter-TSS (NM_001809) promoter-TSS (NM_001809) -116 NM_001809 1058 Hs.1594 NM_001809 ENSG00000115163 CENPA CENP-A|CenH3 centromere protein A protein-coding 7935 chr13 19960155 19960326 + 0 NA intron (NM_001190965, intron 2 of 24) intron (NM_001190965, intron 2 of 24) 1406 NM_001190965 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 13274 chr18 12288070 12288100 + 0 NA Intergenic Intergenic -19584 NM_001303524 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 4219 chr10 100371391 100371495 + 0 NA Intergenic Intergenic -2133 NR_026762 90271 Hs.628088 NR_026762 OLMALINC C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS oligodendrocyte maturation-associated long intergenic non-coding RNA ncRNA 27110 chr7 140062979 140063083 + 0 NA non-coding (NR_130117, exon 1 of 11) non-coding (NR_130117, exon 1 of 11) 690 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 14041 chr19 8832669 8832852 + 0 NA promoter-TSS (NM_144693) promoter-TSS (NM_144693) -456 NM_144693 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 30961 chrX 109390136 109390211 + 0 NA intron (NM_001522, intron 14 of 19) intron (NM_001522, intron 14 of 19) 91883 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 10415 chr15 72272650 72272779 + 0 NA promoter-TSS (NM_001323515) promoter-TSS (NM_001323515) -139 NR_136606 56965 Hs.270244 NM_020213 ENSG00000137817 PARP6 ARTD17|PARP-6-B1|PARP-6-C|pART17 poly(ADP-ribose) polymerase family member 6 protein-coding 2888 chr1 228109270 228109424 + 0 NA promoter-TSS (NM_181441) promoter-TSS (NM_181441) -35 NM_181454 128308 Hs.63236 NM_181441 ENSG00000162910 MRPL55 AAVG5835|L55nt|MRP-L55|PRO19675 mitochondrial ribosomal protein L55 protein-coding 3818 chr10 69232462 69232606 + 0 NA promoter-TSS (NR_120648) promoter-TSS (NR_120648) -44 NR_120648 101928994 Hs.562925 NR_120648 ENSG00000229261 LOC101928994 - uncharacterized LOC101928994 ncRNA 5614 chr11 71425958 71426091 + 0 NA Intergenic L1ME3|LINE|L1 -2670 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 10020 chr15 45200448 45200577 + 0 NA intron (NM_138356, intron 1 of 7) intron (NM_138356, intron 1 of 7) 663 NM_138356 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 8753 chr14 24161108 24161201 + 0 NA promoter-TSS (NM_006084) promoter-TSS (NM_006084) -59 NM_006084 10379 Hs.1706 NM_006084 ENSG00000213928 IRF9 IRF-9|ISGF3|ISGF3G|p48 interferon regulatory factor 9 protein-coding 28334 chr8 101376054 101376105 + 0 NA Intergenic Intergenic 7186 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 19233 chr3 18758188 18758292 + 0 NA Intergenic Intergenic -312652 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 29702 chr9 100411737 100411857 + 0 NA Intergenic CpG -15416 NM_001198807 91283 Hs.530272 NM_080655 ENSG00000066697 MSANTD3 C9orf30|L8 Myb/SANT DNA binding domain containing 3 protein-coding 28295 chr8 100336196 100336300 + 0 NA promoter-TSS (NM_001280539) promoter-TSS (NM_001280539) -30 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 3737 chr10 60414907 60415070 + 0 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -25004 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 15875 chr2 83851213 83851317 + 0 NA Intergenic LTR27C|LTR|ERV1 -439417 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 14364 chr19 35145194 35145328 + 0 NA intron (NM_022006, intron 1 of 5) intron (NM_022006, intron 1 of 5) 2011 NM_022006 53822 Hs.134729 NM_022006 ENSG00000221946 FXYD7 - FXYD domain containing ion transport regulator 7 protein-coding 25746 chr7 16915573 16915677 + 0 NA Intergenic Intergenic -33636 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 19524 chr3 51340682 51340721 + 0 NA intron (NM_004947, intron 37 of 52) intron (NM_004947, intron 37 of 52) -44536 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 15738 chr2 69307477 69307517 + 0 NA Intergenic CpG 79757 NM_001244710 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 9960 chr15 41660421 41660525 + 0 NA promoter-TSS (NM_001080541) promoter-TSS (NM_001080541) 61 NM_001164273 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MGA, MAX dimerization protein protein-coding 17837 chr20 31565810 31565917 + 0 NA intron (NM_030789, intron 10 of 11) MER5A|DNA|hAT-Charlie 7400 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 21857 chr4 143774079 143774183 + 0 NA Intergenic L1PA16|LINE|L1 55217 NR_134680 105377458 Hs.738046 NR_134680 LOC105377458 - uncharacterized LOC105377458 ncRNA 17649 chr20 13839554 13839604 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 54553 NR_029377 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 13111 chr17 80862049 80862153 + 0 NA intron (NM_001163034, intron 13 of 29) intron (NM_001163034, intron 13 of 29) -56469 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 11925 chr17 2711695 2711849 + 0 NA promoter-TSS (NR_136412) promoter-TSS (NR_136412) -139 NM_015229 23277 Hs.22616 NM_015229 ENSG00000132361 CLUH CLU1|KIAA0664 clustered mitochondria homolog protein-coding 25641 chr7 6729646 6729822 + 0 NA Intergenic CpG -5571 NR_002217 441194 Hs.715590 NR_002217 ENSG00000187953 PMS2CL PMS2P13 PMS2 C-terminal like pseudogene pseudo 4421 chr10 116742579 116742738 + 0 NA promoter-TSS (NM_025015) promoter-TSS (NM_025015) -84 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 7124 chr12 56158262 56158400 + 0 NA promoter-TSS (NM_021019) promoter-TSS (NM_021019) 70 NM_079423 4637 Hs.632717 NM_021019 ENSG00000092841 MYL6 ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM myosin light chain 6 protein-coding 18870 chr22 37658453 37658603 + 0 NA promoter-TSS (NM_020315) promoter-TSS (NM_020315) -151 NR_109952 101927051 NR_109952 ENSG00000233360 LOC101927051 - uncharacterized LOC101927051 ncRNA 14972 chr2 9656473 9656577 + 0 NA Intergenic Intergenic -25470 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 30727 chrX 50971556 50971660 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger 60873 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 14327 chr19 29716639 29716743 + 0 NA promoter-TSS (NM_001256047) promoter-TSS (NM_001256047) -902 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 8363 chr13 75482521 75482620 + 0 NA promoter-TSS (NM_001286658) promoter-TSS (NM_001286658) -402 NM_001286659 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 4561 chr10 124461722 124461832 + 0 NA promoter-TSS (NM_001318331) promoter-TSS (NM_001318331) 5 NM_001318332 64077 Hs.527748 NM_022126 ENSG00000107902 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 10871 chr16 1943283 1943403 + 0 NA promoter-TSS (NM_016332) promoter-TSS (NM_016332) -17 NM_016332 51734 Hs.655346 NM_016332 ENSG00000198736 MSRB1 HSPC270|SELR|SELX|SEPX1|SepR methionine sulfoxide reductase B1 protein-coding 9564 chr14 92106644 92106781 + 0 NA promoter-TSS (NR_028458) promoter-TSS (NR_028458) -91 NR_028453 4287 Hs.532632 NM_004993 ENSG00000066427 ATXN3 AT3|ATX3|JOS|MJD|MJD1|SCA3 ataxin 3 protein-coding 4648 chr10 133394103 133394232 + 0 NA promoter-TSS (NM_138384) promoter-TSS (NM_138384) 50 NM_138384 92170 Hs.501578 NM_138384 ENSG00000148824 MTG1 GTP|GTPBP7 mitochondrial ribosome associated GTPase 1 protein-coding 18916 chr22 39292680 39292733 + 0 NA Intergenic MIRb|SINE|MIR 21205 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 13717 chr18 63730846 63730950 + 0 NA Intergenic L1MA2|LINE|L1 -22149 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 12259 chr17 28471675 28471779 + 0 NA Intergenic Intergenic -1919 NM_001346683 9058 Hs.102307 NM_003984 ENSG00000007216 SLC13A2 NADC1|NaCT|NaDC-1|SDCT1 solute carrier family 13 member 2 protein-coding 31037 chrX 123860099 123860198 + 0 NA promoter-TSS (NM_001167) promoter-TSS (NM_001167) -19 NM_001167 331 Hs.356076 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 27255 chr7 155002909 155003013 + 0 NA promoter-TSS (NM_007349) promoter-TSS (NM_007349) 11 NM_007349 22976 Hs.443881 NM_007349 ENSG00000157212 PAXIP1 CAGF28|CAGF29|PACIP1|PAXIP1L|PTIP|TNRC2 PAX interacting protein 1 protein-coding 26413 chr7 74120834 74120938 + 0 NA intron (NM_001204426, intron 13 of 14) intron (NM_001204426, intron 13 of 14) 27730 NM_001204426 3984 Hs.647035 NM_002314 ENSG00000106683 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 7899 chr12 131894362 131894466 + 0 NA promoter-TSS (NM_003565) promoter-TSS (NM_003565) -320 NM_003565 8408 Hs.47061 NM_003565 ENSG00000177169 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 17023 chr2 209638413 209638517 + 0 NA intron (NM_001039538, intron 4 of 14) intron (NM_001039538, intron 4 of 14) 58786 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 16435 chr2 147844185 147844285 + 0 NA promoter-TSS (NM_001278579) promoter-TSS (NM_001278579) -282 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 6210 chr11 120336360 120336410 + 0 NA promoter-TSS (NM_001198665) promoter-TSS (NM_001198665) -524 NM_015313 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 12604 chr17 47650646 47650718 + 0 NA promoter-TSS (NM_001276453) promoter-TSS (NM_001276453) -514 NM_001276453 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 13788 chr18 75183686 75183741 + 0 NA Intergenic Intergenic 21800 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 11259 chr16 31094836 31094991 + 0 NA promoter-TSS (NM_001311311) promoter-TSS (NM_001311311) 86 NM_001311311 79001 Hs.324844 NM_024006 ENSG00000167397 VKORC1 EDTP308|MST134|MST576|VKCFD2|VKOR vitamin K epoxide reductase complex subunit 1 protein-coding 9 chr1 1074136 1074224 + 0 NA 5' UTR (NM_001205252, exon 1 of 2) 5' UTR (NM_001205252, exon 1 of 2) 127 NM_001205252 401934 Hs.568137 NM_001205252 ENSG00000237330 RNF223 - ring finger protein 223 protein-coding 25817 chr7 21355489 21355590 + 0 NA Intergenic Intergenic -72495 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 27408 chr8 12585998 12586103 + 0 NA intron (NR_047662, intron 6 of 8) (GATG)n|Simple_repeat|Simple_repeat 79561 NR_047662 729732 Hs.322761 NR_047662 ENSG00000283674 LOC729732 - uncharacterized LOC729732 ncRNA 26934 chr7 123747690 123747794 + 0 NA intron (NM_003941, intron 1 of 10) intron (NM_003941, intron 1 of 10) 1329 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB Wiskott-Aldrich syndrome like protein-coding 14897 chr2 384013 384117 + 0 NA Intergenic Intergenic -95757 NM_001002919 285016 Hs.355207 NM_001002919 ENSG00000189292 FAM150B AUGA|PRO1097|RGPG542 family with sequence similarity 150 member B protein-coding 9059 chr14 55412808 55412953 + 0 NA Intergenic L2|LINE|L2 -1022 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 26420 chr7 74312745 74312917 + 0 NA intron (NM_032421, intron 1 of 15) intron (NM_032421, intron 1 of 15) 23356 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 20730 chr3 178971747 178971841 + 0 NA Intergenic Intergenic 100074 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 27145 chr7 142556894 142556998 + 0 NA Intergenic Intergenic -109353 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 8712 chr14 22919255 22919338 + 0 NA promoter-TSS (NM_001077351) promoter-TSS (NM_001077351) -109 NM_001077352 55147 Hs.4997 NM_018107 ENSG00000100461 RBM23 CAPERbeta|PP239|RNPC4 RNA binding motif protein 23 protein-coding 29360 chr9 81493180 81493284 + 0 NA Intergenic Intergenic 196303 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 17943 chr20 36050895 36051048 + 0 NA promoter-TSS (NR_027451) promoter-TSS (NR_027451) -11 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 NORAD LINC00657 non-coding RNA activated by DNA damage ncRNA 27242 chr7 151754330 151754441 + 0 NA intron (NM_016203, intron 3 of 15) intron (NM_016203, intron 3 of 15) -18071 NM_001304527 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 21902 chr4 151408830 151408959 + 0 NA promoter-TSS (NM_001109977) promoter-TSS (NM_001109977) -352 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 29635 chr9 96875846 96875995 + 0 NA Intergenic CpG 7020 NR_038890 100132781 Hs.710921 NR_038890 LOC100132781 - cyclin Y like 1 pseudogene pseudo 5361 chr11 62311336 62311434 + 0 NA Intergenic Intergenic -12321 NM_206998 404552 Hs.473247 NM_206998 ENSG00000197745 SCGB1D4 IIS secretoglobin family 1D member 4 protein-coding 15128 chr2 19819612 19819615 + 0 NA Intergenic Intergenic -49241 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 8414 chr13 79604941 79605025 + 0 NA Intergenic Intergenic 38256 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 8329 chr13 66666173 66666235 + 0 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -158965 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 1360 chr1 95435861 95435965 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger -38824 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 2696 chr1 217379468 217379572 + 0 NA Intergenic L1PA7|LINE|L1 -241765 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 19931 chr3 115147683 115147788 + 0 NA promoter-TSS (NM_015642) promoter-TSS (NM_015642) -455 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 24917 chr6 90406259 90406363 + 0 NA Intergenic MER110A|LTR|ERV1 93569 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 6484 chr12 5348653 5348757 + 0 NA Intergenic Intergenic -83409 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 6217 chr11 121258142 121258278 + 0 NA Intergenic L2c|LINE|L2 -34469 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 21045 chr3 196136036 196136140 + 0 NA Intergenic MIRb|SINE|MIR -6548 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 4199 chr10 99685783 99685817 + 0 NA exon (NM_020354, exon 6 of 13) exon (NM_020354, exon 6 of 13) 26294 NM_020354 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 29822 chr9 109102011 109102161 + 0 NA intron (NM_032012, intron 3 of 17) intron (NM_032012, intron 3 of 17) 17859 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 11262 chr16 31138837 31138941 + 0 NA TTS (NM_001258290) TTS (NM_001258290) -3127 NM_002773 5652 Hs.75799 NM_002773 ENSG00000052344 PRSS8 CAP1|PROSTASIN protease, serine 8 protein-coding 23228 chr5 133285722 133285826 + 0 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 141932 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 11123 chr16 22232935 22233087 + 0 NA intron (NM_013302, intron 2 of 17) intron (NM_013302, intron 2 of 17) 26740 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 10342 chr15 68013029 68013056 + 0 NA Intergenic Intergenic -41137 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 26082 chr7 38368277 38368423 + 0 NA intron (NR_040085, intron 3 of 3) intron (NR_040085, intron 3 of 3) 26773 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 20015 chr3 121574624 121574676 + 0 NA intron (NM_001012659, intron 2 of 4) MER1A|DNA|hAT-Charlie 6719 NM_001012659 503582 Hs.224976 NM_001012659 ENSG00000186103 ARGFX - arginine-fifty homeobox protein-coding 2288 chr1 195592412 195592560 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger 989995 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 30707 chrX 49155891 49156033 + 0 NA Intergenic Intergenic -6881 NM_024859 79917 Hs.193170 NM_024859 ENSG00000269313 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 25448 chr6 161274112 161274248 + 0 NA promoter-TSS (NM_020133) promoter-TSS (NM_020133) -105 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 15408 chr2 40401982 40402134 + 0 NA intron (NM_021097, intron 1 of 9) MER41B|LTR|ERV1 28246 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 2954 chr1 232594137 232594258 + 0 NA Intergenic Intergenic -78589 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 22703 chr5 72816667 72816814 + 0 NA exon (NM_002270, exon 1 of 25) exon (NM_002270, exon 1 of 25) 149 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 23067 chr5 115873509 115873589 + 0 NA intron (NM_001318091, intron 3 of 4) intron (NM_001318091, intron 3 of 4) -31698 NR_033362 9140 Hs.264482 NM_004707 ENSG00000145782 ATG12 APG12|APG12L|FBR93|HAPG12 autophagy related 12 protein-coding 842 chr1 47569858 47570011 + 0 NA Intergenic Intergenic -132617 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 19373 chr3 39022071 39022228 + 0 NA Intergenic MER72|LTR|ERV1 -29837 NR_144400 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 27812 chr8 52119917 52120045 + 0 NA intron (NM_014682, intron 23 of 25) L3|LINE|CR1 -74381 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 19390 chr3 40418242 40418377 + 0 NA intron (NM_001291961, intron 7 of 10) intron (NM_001291961, intron 7 of 10) 31064 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 18484 chr21 33380683 33380787 + 0 NA Intergenic Intergenic -22161 NM_001329128 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 25272 chr6 144954064 144954168 + 0 NA Intergenic Intergenic 548461 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 23624 chr5 159342016 159342035 + 0 NA intron (NR_037889, intron 2 of 4) intron (NR_037889, intron 2 of 4) 10507 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 14441 chr19 39412259 39412378 + 0 NA promoter-TSS (NM_022835) promoter-TSS (NM_022835) -792 NM_022835 64857 Hs.631574 NM_022835 ENSG00000090924 PLEKHG2 ARHGEF42|CLG|LDAMD pleckstrin homology and RhoGEF domain containing G2 protein-coding 20767 chr3 182052451 182052506 + 0 NA Intergenic Intergenic 100114 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 12689 chr17 50884598 50884727 + 0 NA Intergenic Intergenic -16684 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 21737 chr4 118685254 118685354 + 0 NA promoter-TSS (NM_020961) promoter-TSS (NM_020961) 37 NR_125930 101929741 Hs.636184 NR_125930 ENSG00000281731 LOC101929741 - uncharacterized LOC101929741 ncRNA 13228 chr18 3624089 3624276 + 0 NA intron (NM_001003809, intron 4 of 9) intron (NM_001003809, intron 4 of 9) 20445 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 26966 chr7 127585490 127585676 + 0 NA promoter-TSS (NM_024523) promoter-TSS (NM_024523) 17 NM_024523 79571 Hs.521168 NM_024523 ENSG00000179562 GCC1 GCC1P|GCC88 GRIP and coiled-coil domain containing 1 protein-coding 22485 chr5 49600490 49600594 + 0 NA Intergenic BSR/Beta|Satellite|Satellite 840858 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 22472 chr5 43515097 43515226 + 0 NA promoter-TSS (NM_198566) promoter-TSS (NM_198566) 10 NM_198566 375444 Hs.661641 NM_198566 ENSG00000172244 C5orf34 - chromosome 5 open reading frame 34 protein-coding 2410 chr1 202348575 202348687 + 0 NA promoter-TSS (NM_001167857) promoter-TSS (NM_001167857) -71 NM_001167857 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 29985 chr9 116574430 116574534 + 0 NA intron (NM_014010, intron 18 of 21) intron (NM_014010, intron 18 of 21) 70199 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 29545 chr9 92152105 92152215 + 0 NA intron (NR_027341, intron 1 of 3) intron (NR_027341, intron 1 of 3) 10693 NR_027341 158314 Hs.149940 NR_027341 LINC00475 C9orf44 long intergenic non-protein coding RNA 475 ncRNA 15987 chr2 97664120 97664284 + 0 NA promoter-TSS (NM_005735) promoter-TSS (NM_005735) -104 NM_005735 10120 Hs.98791 NM_005735 ENSG00000115073 ACTR1B ARP1B|CTRN2|PC3 ARP1 actin-related protein 1 homolog B, centractin beta protein-coding 17567 chr20 9978434 9978543 + 0 NA Intergenic Intergenic -7845 NR_109861 101929371 Hs.619265 NR_109861 LOC101929371 - uncharacterized LOC101929371 ncRNA 17406 chr2 241686795 241686904 + 0 NA promoter-TSS (NM_001330161) promoter-TSS (NM_001330161) 119 NM_001320905 1841 Hs.471873 NM_012145 ENSG00000168393 DTYMK CDC8|PP3731|TMPK|TYMK deoxythymidylate kinase protein-coding 1737 chr1 152164858 152164962 + 0 NA Intergenic Intergenic -5682 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 24926 chr6 95577522 95577640 + 0 NA promoter-TSS (NR_104136) promoter-TSS (NR_104136) 84 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 23611 chr5 158054423 158054527 + 0 NA Intergenic Intergenic -195300 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 16944 chr2 203239220 203239296 + 0 NA intron (NM_177538, intron 1 of 12) CpG 817 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 4814 chr11 10454992 10455096 + 0 NA promoter-TSS (NM_001025390) promoter-TSS (NM_001025390) -75 NM_001025389 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 5128 chr11 34205039 34205190 + 0 NA intron (NM_145804, intron 1 of 16) L2b|LINE|L2 99550 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|NET43 N-acetyltransferase 10 protein-coding 31089 chrX 135052256 135052360 + 0 NA promoter-TSS (NM_001078172) promoter-TSS (NM_001078172) -117 NM_001134321 26071 Hs.460924 NM_015582 ENSG00000203950 FAM127B CXX1b|MAR8A family with sequence similarity 127 member B protein-coding 24786 chr6 72787711 72787855 + 0 NA intron (NM_001160133, intron 1 of 14) MamRep605|LTR?|LTR? 157288 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 17540 chr20 6123323 6123427 + 0 NA 5' UTR (NM_017671, exon 1 of 15) 5' UTR (NM_017671, exon 1 of 15) 169 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 29061 chr9 34646639 34646743 + 0 NA 5' UTR (NM_000155, exon 1 of 11) 5' UTR (NM_000155, exon 1 of 11) 102 NM_000155 2592 Hs.522090 NM_000155 ENSG00000213930 GALT - galactose-1-phosphate uridylyltransferase protein-coding 9493 chr14 85532263 85532367 + 0 NA intron (NM_001346145, intron 1 of 1) intron (NM_001346145, intron 1 of 1) 923 NM_001346145 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 30798 chrX 69027537 69027680 + 0 NA Intergenic Intergenic 137914 NM_145119 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 3411 chr10 22682656 22682731 + 0 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 31415 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 19104 chr3 5122261 5122365 + 0 NA promoter-TSS (NM_018184) promoter-TSS (NM_018184) 68 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 11243 chr16 30786445 30786549 + 0 NA intron (NM_001345970, intron 1 of 2) CpG 722 NM_001345970 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 27218 chr7 150379161 150379331 + 0 NA promoter-TSS (NM_173680) promoter-TSS (NM_173680) -71 NM_173680 285971 Hs.655734 NM_173680 ENSG00000196456 ZNF775 - zinc finger protein 775 protein-coding 3284 chr10 11830968 11831064 + 0 NA intron (NM_153256, intron 1 of 3) intron (NM_153256, intron 1 of 3) 7618 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 7048 chr12 53006103 53006245 + 0 NA promoter-TSS (NM_001300821) promoter-TSS (NM_001300821) -84 NM_001417 1975 Hs.648394 NM_001417 ENSG00000063046 EIF4B EIF-4B|PRO1843 eukaryotic translation initiation factor 4B protein-coding 10643 chr15 88467368 88467472 + 0 NA promoter-TSS (NM_001321972) promoter-TSS (NM_001321972) -18 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 27036 chr7 133252913 133253041 + 0 NA promoter-TSS (NM_021807) promoter-TSS (NM_021807) -90 NM_001037126 60412 Hs.321273 NM_021807 ENSG00000131558 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 280 chr1 19312032 19312136 + 0 NA promoter-TSS (NM_001040125) promoter-TSS (NM_001040125) 62 NM_001320979 8574 Hs.571886 NM_003689 ENSG00000053371 AKR7A2 AFAR|AFAR1|AFB1-AR1|AKR7 aldo-keto reductase family 7 member A2 protein-coding 18078 chr20 44966364 44966458 + 0 NA promoter-TSS (NR_038341) promoter-TSS (NR_038341) 47 NR_038341 100505826 Hs.196065 NR_038341 ENSG00000227477 STK4-AS1 - STK4 antisense RNA 1 (head to head) ncRNA 25275 chr6 145148521 145148636 + 0 NA Intergenic LTR16A|LTR|ERVL -586291 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 29492 chr9 89154711 89154815 + 0 NA intron (NM_016848, intron 1 of 11) intron (NM_016848, intron 1 of 11) 24004 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 13514 chr18 46917414 46917565 + 0 NA promoter-TSS (NM_001324046) promoter-TSS (NM_001324046) 43 NM_001324054 9063 Hs.57769 NM_004671 ENSG00000078043 PIAS2 ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4 protein inhibitor of activated STAT 2 protein-coding 14940 chr2 6917345 6917449 + 0 NA promoter-TSS (NM_014746) promoter-TSS (NM_014746) 5 NM_014746 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4 ring finger protein 144A protein-coding 3498 chr10 29659180 29659309 + 0 NA intron (NM_003174, intron 2 of 35) intron (NM_003174, intron 2 of 35) -24272 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 30416 chrUn_GL000220v1 142840 142994 + 0 NA Intergenic (CAGG)n|Simple_repeat|Simple_repeat -5787 NR_128716 103504739 NR_128716 ENSG00000277379 MIR6724-3 hsa-mir-6724-3 microRNA 6724-3 ncRNA 8346 chr13 73335296 73335442 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -228875 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 22304 chr5 18792354 18792522 + 0 NA Intergenic LTR18A|LTR|ERVL 985164 NR_134287 646241 Hs.407197 NR_134286 LOC646241 - uncharacterized LOC646241 ncRNA 4177 chr10 97849164 97849268 + 0 NA intron (NR_108035, intron 1 of 2) intron (NR_108035, intron 1 of 2) 582 NR_108035 100505561 Hs.351904 NR_108035 ENSG00000227356 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 8610 chr13 110412264 110412393 + 0 NA intron (NM_001846, intron 4 of 47) intron (NM_001846, intron 4 of 47) 50959 NM_001267044 100129836 Hs.640035 NM_001267044 COL4A2-AS2 - COL4A2 antisense RNA 2 protein-coding 8099 chr13 33818100 33818204 + 0 NA promoter-TSS (NM_002915) promoter-TSS (NM_002915) 83 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 11766 chr16 84197310 84197357 + 0 NA TTS (NM_001145400) TTS (NM_001145400) 6216 NM_139174 161931 Hs.8977 NM_139174 ENSG00000140955 ADAD2 TENRL adenosine deaminase domain containing 2 protein-coding 5631 chr11 72549700 72549739 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -20937 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 27456 chr8 18416015 18416119 + 0 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 24822 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 24173 chr6 20811270 20811396 + 0 NA intron (NM_017774, intron 8 of 15) LTR65|LTR|ERV1 276876 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 12228 chr17 25920133 25920286 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1169032 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 6611 chr12 12009326 12009430 + 0 NA Intergenic Intergenic -61566 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 30654 chrX 46260664 46260789 + 0 NA Intergenic Intergenic 66948 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 8105 chr13 34462829 34462982 + 0 NA intron (NR_047036, intron 2 of 2) intron (NR_047036, intron 2 of 2) 177780 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 16773 chr2 182372784 182372888 + 0 NA intron (NM_001003683, intron 2 of 14) intron (NM_001003683, intron 2 of 14) 54212 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 30085 chr9 124415366 124415525 + 0 NA promoter-TSS (NM_002799) promoter-TSS (NM_002799) 28 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 14096 chr19 10928637 10928748 + 0 NA promoter-TSS (NM_001321440) promoter-TSS (NM_001321440) -25 NM_001321439 78992 Hs.164026 NM_024029 ENSG00000130733 YIPF2 FinGER2 Yip1 domain family member 2 protein-coding 8375 chr13 76473619 76473723 + 0 NA Intergenic Intergenic 412734 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 8037 chr13 29583553 29583657 + 0 NA intron (NM_003045, intron 1 of 12) intron (NM_003045, intron 1 of 12) 12083 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 14765 chr19 53793094 53793275 + 0 NA TTS (NM_001277126) TTS (NM_001277126) 4479 NR_029866 442918 NR_029866 ENSG00000199143 MIR373 MIRN373|hsa-mir-373|miRNA373|mir-373 microRNA 373 ncRNA 21795 chr4 128526134 128526252 + 0 NA Intergenic Intergenic 98177 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 12440 chr17 39754498 39754645 + 0 NA Intergenic CpG 14604 NM_001242443 2886 Hs.86859 NM_005310 ENSG00000141738 GRB7 - growth factor receptor bound protein 7 protein-coding 8080 chr13 32586359 32586482 + 0 NA promoter-TSS (NM_015032) promoter-TSS (NM_015032) -7 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 16362 chr2 135052565 135052669 + 0 NA intron (NM_012233, intron 2 of 23) CpG-16635 352 NM_001172435 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 4075 chr10 92330097 92330223 + 0 NA intron (NM_017824, intron 2 of 5) intron (NM_017824, intron 2 of 5) 38997 NM_017824 54708 Hs.573490 NM_017824 ENSG00000198060 MARCH5 MARCH-V|MITOL|RNF153 membrane associated ring-CH-type finger 5 protein-coding 15701 chr2 66869271 66869290 + 0 NA Intergenic Intergenic -35156 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 1502 chr1 110916940 110917155 + 0 NA Intergenic MLT2F|LTR|ERVL 43947 NM_000560 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 26569 chr7 90411623 90411773 + 0 NA intron (NM_001185073, intron 2 of 2) intron (NM_001185073, intron 2 of 2) 8364 NM_012129 9069 Hs.731917 NM_012129 ENSG00000157224 CLDN12 - claudin 12 protein-coding 8175 chr13 42040327 42040487 + 0 NA intron (NM_001204504, intron 1 of 29) CpG 371 NM_001204504 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 16926 chr2 201451539 201451691 + 0 NA promoter-TSS (NM_001206864) promoter-TSS (NM_001206864) -19 NM_015049 66008 Hs.152774 NM_015049 ENSG00000115993 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking kinesin protein 2 protein-coding 19531 chr3 51982649 51982682 + 0 NA promoter-TSS (NM_001198896) promoter-TSS (NM_001198896) -619 NM_001198897 95 Hs.334707 NM_000666 ENSG00000243989 ACY1 ACY-1|ACY1D|HEL-S-5 aminoacylase 1 protein-coding 21154 chr4 7547462 7547566 + 0 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) 87486 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 4743 chr11 6320988 6321092 + 0 NA promoter-TSS (NM_145040) promoter-TSS (NM_145040) -530 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 17549 chr20 6660569 6660729 + 0 NA Intergenic Intergenic -107449 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 3488 chr10 28387239 28387393 + 0 NA Intergenic Intergenic -84250 NR_134518 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 4665 chr11 568453 568587 + 0 NA promoter-TSS (NR_038262) promoter-TSS (NR_038262) -63 NR_038262 100506211 Hs.446388 NR_038262 ENSG00000247095 MIR210HG - MIR210 host gene ncRNA 29078 chr9 35657879 35658032 + 0 NA promoter-TSS (NR_003051) promoter-TSS (NR_003051) 63 NR_003051 6023 Hs.587502 NR_003051 ENSG00000269900 RMRP CHH|NME1|RMRPR|RRP2 RNA component of mitochondrial RNA processing endoribonuclease ncRNA 25985 chr7 31373430 31373579 + 0 NA Intergenic Intergenic -32580 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 15895 chr2 85053960 85054064 + 0 NA 3' UTR (NM_020122, exon 7 of 7) 3' UTR (NM_020122, exon 7 of 7) -79448 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 6949 chr12 48157502 48157662 + 0 NA promoter-TSS (NM_001319296) promoter-TSS (NM_001319296) 13 NM_001319299 140461 Hs.432699 NM_024095 ENSG00000177981 ASB8 PP14212 ankyrin repeat and SOCS box containing 8 protein-coding 17477 chr20 3204361 3204445 + 0 NA intron (NM_023935, intron 1 of 8) CpG 294 NM_023935 65992 Hs.471975 NM_023935 ENSG00000198171 DDRGK1 C20orf116|UFBP1|dJ1187M17.3 DDRGK domain containing 1 protein-coding 4270 chr10 102918084 102918233 + 0 NA promoter-TSS (NM_199077) promoter-TSS (NM_199077) -160 NM_017649 54805 Hs.643509 NM_017649 ENSG00000148842 CNNM2 ACDP2|HOMG6|HOMGSMR cyclin and CBS domain divalent metal cation transport mediator 2 protein-coding 12595 chr17 46194079 46194145 + 0 NA intron (NR_034172, intron 1 of 1) CpG 539 NR_034172 644246 Hs.644600 NR_034172 ENSG00000214401 KANSL1-AS1 - KANSL1 antisense RNA 1 ncRNA 19079 chr3 4421283 4421387 + 0 NA intron (NM_001164674, intron 2 of 7) MIRb|SINE|MIR 45947 NM_001164674 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 6282 chr11 125164444 125164548 + 0 NA promoter-TSS (NM_022062) promoter-TSS (NM_022062) 113 NR_125759 103695364 Hs.576940 NR_125759 ENSG00000254880 PKNOX2-AS1 - PKNOX2 antisense RNA 1 (head to head) ncRNA 26387 chr7 73005848 73005996 + 0 NA promoter-TSS (NR_040582) promoter-TSS (NR_040582) 21 NR_040582 442578 Hs.632310 NM_001013739 STAG3L3 STAG3L1|STAG3L2|STAG3L3P stromal antigen 3-like 3 (pseudogene) pseudo 11492 chr16 67183613 67183717 + 0 NA TTS (NM_178516) TTS (NM_178516) 315 NM_001040715 653319 Hs.651201 NM_001040715 ENSG00000196123 KIAA0895L - KIAA0895 like protein-coding 8477 chr13 97648654 97648778 + 0 NA Intergenic Intergenic 214495 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 8359 chr13 75182101 75182216 + 0 NA Intergenic L2|LINE|L2 58223 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 5658 chr11 74138641 74138794 + 0 NA intron (NM_015531, intron 5 of 30) intron (NM_015531, intron 5 of 30) 32302 NM_001286577 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 calcium dependent domain containing 3 protein-coding 9979 chr15 42845738 42845842 + 0 NA intron (NM_173500, intron 3 of 14) Tigger3a|DNA|TcMar-Tigger 75019 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 29789 chr9 108041731 108041789 + 0 NA Intergenic Intergenic -552040 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 20582 chr3 166955696 166955840 + 0 NA Intergenic L1PBa|LINE|L1 57085 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 20787 chr3 182793542 182793641 + 0 NA promoter-TSS (NM_014616) promoter-TSS (NM_014616) 88 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 7173 chr12 57905552 57905605 + 0 NA Intergenic Intergenic 30586 NR_038269 100506844 Hs.90286 NR_038269 LOC100506844 - uncharacterized LOC100506844 ncRNA 8121 chr13 37656820 37656924 + 0 NA intron (NM_016179, intron 6 of 10) intron (NM_016179, intron 6 of 10) -58028 NM_001286667 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 22408 chr5 39158236 39158340 + 0 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 61290 NM_199335 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 21603 chr4 98261101 98261253 + 0 NA promoter-TSS (NM_001100426) promoter-TSS (NM_001100426) -199 NM_001100430 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 15975 chr2 96509512 96509569 + 0 NA Intergenic Intergenic -1431 NR_104346 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 19788 chr3 102299237 102299385 + 0 NA Intergenic (TGAGGA)n|Simple_repeat|Simple_repeat 135606 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 24865 chr6 84193159 84193263 + 0 NA intron (NM_014895, intron 11 of 26) intron (NM_014895, intron 11 of 26) 34424 NM_001286206 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 21920 chr4 153344703 153344769 + 0 NA promoter-TSS (NM_001253861) promoter-TSS (NM_001253861) 87 NM_032117 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 4870 chr11 13332806 13332943 + 0 NA intron (NM_001178, intron 3 of 19) intron (NM_001178, intron 3 of 19) 55147 NM_001297722 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 3902 chr10 73872007 73872214 + 0 NA intron (NM_001222, intron 2 of 18) intron (NM_001222, intron 2 of 18) 2481 NM_001222 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 18604 chr22 17171598 17171702 + 0 NA Intergenic CpG -6363 NM_017829 27440 Hs.26890 NM_017829 ENSG00000069998 CECR5 - cat eye syndrome chromosome region, candidate 5 protein-coding 17218 chr2 227403113 227403217 + 0 NA Intergenic L2b|LINE|L2 -23859 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 11153 chr16 24646330 24646528 + 0 NA Intergenic Charlie5|DNA|hAT-Charlie 24633 NR_122072 400511 Hs.592028 NR_122072 ENSG00000224310 LINC01567 - long intergenic non-protein coding RNA 1567 ncRNA 30901 chrX 103686725 103686920 + 0 NA promoter-TSS (NM_001142423) promoter-TSS (NM_001142423) -4 NM_001142423 9643 Hs.326387 NM_012286 ENSG00000123562 MORF4L2 MORFL2|MRGX mortality factor 4 like 2 protein-coding 22605 chr5 61299277 61299360 + 0 NA Intergenic Intergenic -32955 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 19817 chr3 107217017 107217097 + 0 NA intron (NR_028303, intron 1 of 3) Charlie17a|DNA|hAT-Charlie 23581 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 18166 chr20 49805293 49805482 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger -7326 NR_048538 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 7383 chr12 88854348 88854541 + 0 NA Intergenic L1MEc|LINE|L1 165248 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 14011 chr19 6863597 6863747 + 0 NA Intergenic Intergenic -23877 NM_001256254 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 1139 chr1 77322359 77322463 + 0 NA intron (NM_174858, intron 5 of 13) intron (NM_174858, intron 5 of 13) 39809 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 26196 chr7 46139193 46139295 + 0 NA Intergenic L1MD|LINE|L1 -217972 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 1319 chr1 93701863 93701993 + 0 NA intron (NM_001261408, intron 3 of 13) intron (NM_001261408, intron 3 of 13) -20090 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 20777 chr3 182597806 182597910 + 0 NA Intergenic MER5B|DNA|hAT-Charlie -90734 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 27885 chr8 57058630 57058734 + 0 NA Intergenic L1MD2|LINE|L1 -64811 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 9062 chr14 55448195 55448354 + 0 NA Intergenic Intergenic -7729 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 1747 chr1 152887088 152887206 + 0 NA Intergenic Intergenic 8825 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 12962 chr17 73311994 73312098 + 0 NA promoter-TSS (NM_012121) promoter-TSS (NM_012121) -42 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 27298 chr7 158818814 158818913 + 0 NA intron (NM_020728, intron 1 of 21) intron (NM_020728, intron 1 of 21) 10765 NM_020728 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 14744 chr19 51688350 51688454 + 0 NA non-coding (NR_108100, exon 2 of 2) non-coding (NR_108100, exon 2 of 2) -1032 NM_001316994 147650 Hs.467174 NM_207324 ENSG00000182310 SPACA6 LET7EH|LINC00085|NCRNA00085|SPACA6P sperm acrosome associated 6 protein-coding 24502 chr6 37791453 37791618 + 0 NA Intergenic Intergenic -27996 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 18361 chr20 60203571 60203675 + 0 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) 65131 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 13030 chr17 76027379 76027501 + 0 NA promoter-TSS (NM_001320747) promoter-TSS (NM_001320747) 12 NM_001320747 2125 Hs.500635 NM_001988 ENSG00000167880 EVPL EVPK envoplakin protein-coding 5698 chr11 77192131 77192210 + 0 NA exon (NM_000260, exon 31 of 49) exon (NM_000260, exon 31 of 49) 63900 NM_001127180 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 17714 chr20 19314767 19314871 + 0 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -30223 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 24969 chr6 106360493 106360601 + 0 NA Intergenic CpG -34727 NM_001286111 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|hAPG5 autophagy related 5 protein-coding 19545 chr3 52278727 52278831 + 0 NA promoter-TSS (NM_025222) promoter-TSS (NM_025222) -136 NM_025222 80335 Hs.194110 NM_025222 ENSG00000164091 WDR82 MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A WD repeat domain 82 protein-coding 20334 chr3 146132118 146132198 + 0 NA intron (NM_182943, intron 1 of 19) intron (NM_182943, intron 1 of 19) 29337 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 3716 chr10 58385191 58385344 + 0 NA non-coding (NR_073073, exon 1 of 8) non-coding (NR_073073, exon 1 of 8) 124 NM_001270782 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 23015 chr5 111757394 111757577 + 0 NA promoter-TSS (NM_004772) promoter-TSS (NM_004772) 70 NM_001142479 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 3014 chr1 235397803 235397907 + 0 NA intron (NM_001287802, intron 2 of 15) intron (NM_001287802, intron 2 of 15) 30495 NM_001079515 6905 Hs.744998 NM_003193 ENSG00000116957 TBCE HRD|KCS|KCS1|PEAMO|pac2 tubulin folding cofactor E protein-coding 29930 chr9 114587534 114587638 + 0 NA promoter-TSS (NM_004888) promoter-TSS (NM_004888) -128 NM_004888 9550 Hs.388654 NM_004888 ENSG00000136888 ATP6V1G1 ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10 ATPase H+ transporting V1 subunit G1 protein-coding 20884 chr3 187567784 187567888 + 0 NA Intergenic MIRc|SINE|MIR 102577 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 8703 chr14 22653169 22653273 + 0 NA Intergenic Intergenic 54983 NM_022060 63874 Hs.445665 NM_022060 ENSG00000100439 ABHD4 ABH4 abhydrolase domain containing 4 protein-coding 20669 chr3 172711108 172711239 + 0 NA promoter-TSS (NM_001146276) promoter-TSS (NM_001146276) 45 NM_001146278 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 11731 chr16 81621620 81621724 + 0 NA intron (NM_198390, intron 3 of 20) intron (NM_198390, intron 3 of 20) 10324 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 10594 chr15 84579603 84579707 + 0 NA non-coding (NR_038273, exon 4 of 4) non-coding (NR_038273, exon 4 of 4) 8521 NR_038273 100506874 Hs.150824 NR_038273 LINC00933 - long intergenic non-protein coding RNA 933 ncRNA 10136 chr15 55289821 55289945 + 0 NA promoter-TSS (NM_183235) promoter-TSS (NM_183235) -68 NM_183235 5873 Hs.626665 NM_004580 ENSG00000069974 RAB27A GS2|HsT18676|RAB27|RAM RAB27A, member RAS oncogene family protein-coding 5118 chr11 33690623 33690723 + 0 NA Intergenic Intergenic 10067 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 7363 chr12 86712428 86712532 + 0 NA intron (NM_013244, intron 1 of 6) intron (NM_013244, intron 1 of 6) 126424 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 28657 chr8 128183247 128183351 + 0 NA Intergenic L2b|LINE|L2 33183 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13186 chr17 82876242 82876334 + 0 NA intron (NM_005993, intron 14 of 38) intron (NM_005993, intron 14 of 38) -36233 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 11688 chr16 78684269 78684347 + 0 NA intron (NM_001291997, intron 7 of 7) MLT1M|LTR|ERVL-MaLR 584895 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 30754 chrX 54715746 54715850 + 0 NA Intergenic Intergenic 82442 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 20614 chr3 169662326 169662470 + 0 NA intron (NM_004991, intron 1 of 16) CpG 1377 NM_001205194 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 9366 chr14 74261435 74261539 + 0 NA 3' UTR (NM_182894, exon 5 of 5) 3' UTR (NM_182894, exon 5 of 5) 22015 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 19690 chr3 86954376 86954480 + 0 NA intron (NM_016206, intron 3 of 3) intron (NM_016206, intron 3 of 3) 36695 NM_001320493 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 8518 chr13 102020976 102021095 + 0 NA intron (NM_001321937, intron 1 of 3) L2|LINE|L2 24969 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 641 chr1 37471793 37471897 + 0 NA intron (NR_038842, intron 1 of 2) intron (NR_038842, intron 1 of 2) 2598 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 24718 chr6 53956224 53956370 + 0 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 26315 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 19244 chr3 21017621 21017725 + 0 NA Intergenic L1PB1|LINE|L1 -388053 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 26665 chr7 98401012 98401127 + 0 NA promoter-TSS (NM_018842) promoter-TSS (NM_018842) 46 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 19338 chr3 36525457 36525513 + 0 NA intron (NM_003149, intron 8 of 10) intron (NM_003149, intron 8 of 10) 144998 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 17886 chr20 33789722 33789876 + 0 NA intron (NR_104259, intron 13 of 13) intron (NR_104259, intron 13 of 13) 21300 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 4734 chr11 5600440 5600544 + 0 NA intron (NM_001198645, intron 1 of 5) intron (NM_001198645, intron 1 of 5) 3857 NM_001003818 117854 Hs.729048 NM_058166 ENSG00000121236 TRIM6 RNF89 tripartite motif containing 6 protein-coding 2962 chr1 232988745 232988841 + 0 NA intron (NM_014801, intron 32 of 33) intron (NM_014801, intron 32 of 33) 37951 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 21346 chr4 49129921 49130075 + 0 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 143356 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 15410 chr2 40434974 40435128 + 0 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -4747 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 6640 chr12 13101208 13101312 + 0 NA intron (NM_001206842, intron 1 of 5) CpG 2436 NM_001080555 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 29986 chr9 116687182 116687321 + 0 NA promoter-TSS (NM_198186) promoter-TSS (NM_198186) 12 NM_198188 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 15871 chr2 82140145 82140155 + 0 NA Intergenic PABL_A|LTR|ERV1 -673204 NR_110161 100507201 Hs.98589 NR_110161 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 21939 chr4 156970922 156971009 + 0 NA non-coding (NR_036641, exon 1 of 7) non-coding (NR_036641, exon 1 of 7) 429 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 870 chr1 52033753 52033857 + 0 NA promoter-TSS (NM_138417) promoter-TSS (NM_138417) -5 NM_138417 112970 Hs.476033 NM_138417 ENSG00000198841 KTI12 SBBI81|TOT4 KTI12 chromatin associated homolog protein-coding 11074 chr16 18926540 18926678 + 0 NA promoter-TSS (NM_015092) promoter-TSS (NM_015092) -205 NM_015092 23049 Hs.460179 NM_015092 ENSG00000157106 SMG1 61E3.4|ATX|LIP SMG1, nonsense mediated mRNA decay associated PI3K related kinase protein-coding 6817 chr12 30806182 30806286 + 0 NA Intergenic Intergenic 10553 NR_040245 100287314 Hs.355210 NR_040245 ENSG00000235884 LINC00941 - long intergenic non-protein coding RNA 941 ncRNA 10598 chr15 84633753 84633883 + 0 NA intron (NR_003654, intron 1 of 3) CpG 2358 NR_004859 54581 Hs.658114 NM_022050 SCAND2P SCAND2 SCAN domain containing 2 pseudogene pseudo 21452 chr4 74659738 74659858 + 0 NA Intergenic Intergenic 134888 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 13757 chr18 70358161 70358244 + 0 NA Intergenic Intergenic 22763 NR_126336 101927481 Hs.633706 NR_126336 ENSG00000266258 LINC01909 - long intergenic non-protein coding RNA 1909 ncRNA 21733 chr4 118278600 118278729 + 0 NA promoter-TSS (NR_003584) promoter-TSS (NR_003584) -98 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 19713 chr3 97719295 97719399 + 0 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -45174 NR_136601 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 2903 chr1 228838630 228838734 + 0 NA Intergenic Intergenic 103605 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13737 chr18 67385632 67385678 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -130891 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 18623 chr22 18150048 18150134 + 0 NA promoter-TSS (NM_017414) promoter-TSS (NM_017414) 100 NM_017414 11274 Hs.38260 NM_017414 ENSG00000184979 USP18 ISG43|UBP43 ubiquitin specific peptidase 18 protein-coding 21927 chr4 153748531 153748683 + 0 NA intron (NM_173662, intron 3 of 8) intron (NM_173662, intron 3 of 8) 11628 NM_173662 285533 Hs.388364 NM_173662 ENSG00000145428 RNF175 - ring finger protein 175 protein-coding 10194 chr15 59276771 59276793 + 0 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 69966 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 2165 chr1 181088673 181088761 + 0 NA 5' UTR (NM_016545, exon 1 of 1) 5' UTR (NM_016545, exon 1 of 1) 215 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 12922 chr17 71071880 71072078 + 0 NA Intergenic MIR3|SINE|MIR 130200 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 14721 chr19 50476416 50476527 + 0 NA promoter-TSS (NM_175063) promoter-TSS (NM_175063) -6 NM_175063 284361 Hs.448941 NM_175063 ENSG00000161671 EMC10 C19orf63|HSM1|HSS1 ER membrane protein complex subunit 10 protein-coding 21934 chr4 155629293 155629397 + 0 NA Intergenic MIRc|SINE|MIR -37365 NM_001130682 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A3 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A1|MYMY6 guanylate cyclase 1 soluble subunit alpha protein-coding 6129 chr11 116773018 116773043 + 0 NA promoter-TSS (NM_001159736) promoter-TSS (NM_001159736) -32 NM_001159736 84811 Hs.437341 NM_032725 ENSG00000137656 BUD13 Cwc26|fSAP71 BUD13 homolog protein-coding 17999 chr20 39190788 39190892 + 0 NA Intergenic Intergenic 33908 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 29379 chr9 83154490 83154594 + 0 NA Intergenic Intergenic -91414 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 18559 chr21 42097971 42098075 + 0 NA intron (NM_173568, intron 6 of 21) intron (NM_173568, intron 6 of 21) 10511 NR_027243 150147 Hs.558646 NM_152507 ENSG00000184385 UMODL1-AS1 C21orf128 UMODL1 antisense RNA 1 ncRNA 18420 chr21 14534164 14534185 + 0 NA intron (NM_001286523, intron 1 of 8) intron (NM_001286523, intron 1 of 8) 12186 NM_001286523 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 16569 chr2 162478806 162478910 + 0 NA intron (NM_173162, intron 5 of 7) intron (NM_173162, intron 5 of 7) 134477 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 16524 chr2 158931694 158931798 + 0 NA Intergenic Intergenic -36888 NM_001145909 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 24899 chr6 87944730 87944924 + 0 NA Intergenic Intergenic -102962 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 19518 chr3 50328176 50328318 + 0 NA promoter-TSS (NM_007275) promoter-TSS (NM_007275) -9 NM_007275 11334 Hs.517981 NM_007275 ENSG00000114383 TUSC2 C3orf11|FUS1|PAP|PDAP2 tumor suppressor candidate 2 protein-coding 22611 chr5 61408739 61408870 + 0 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 76531 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 25504 chr6 170306574 170306678 + 0 NA promoter-TSS (NM_001286381) promoter-TSS (NM_001286381) -96 NM_001286381 84498 Hs.369522 NM_032448 ENSG00000112584 FAM120B CCPG|KIAA1838|PGCC1|dJ894D12.1 family with sequence similarity 120B protein-coding 23724 chr5 172479088 172479192 + 0 NA Intergenic Intergenic -24617 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 18657 chr22 20777832 20777963 + 0 NA intron (NM_000185, intron 1 of 4) intron (NM_000185, intron 1 of 4) 3802 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 26941 chr7 123863670 123863793 + 0 NA intron (NM_012269, intron 2 of 4) MER90|LTR|ERV1 18562 NM_012269 23553 Hs.28673 NM_012269 ENSG00000106302 HYAL4 CSHY hyaluronoglucosaminidase 4 protein-coding 30736 chrX 53088690 53088811 + 0 NA TTS (NM_022117) TTS (NM_022117) -5407 NR_110456 102723508 Hs.633244 NR_110456 KANTR LINC01155|Spasm KDM5C adjacent non-coding transcript ncRNA 183 chr1 12550031 12550085 + 0 NA Intergenic Intergenic 28965 NR_106788 102466722 NR_106788 ENSG00000276830 MIR6730 hsa-mir-6730 microRNA 6730 ncRNA 5203 chr11 43920861 43920973 + 0 NA promoter-TSS (NR_038907) promoter-TSS (NR_038907) 27 NR_038907 100507300 Hs.664588 NR_038907 ENSG00000244926 ALKBH3-AS1 - ALKBH3 antisense RNA 1 ncRNA 16294 chr2 128091073 128091186 + 0 NA promoter-TSS (NM_020120) promoter-TSS (NM_020120) -51 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 16272 chr2 127226747 127226926 + 0 NA Intergenic Intergenic -21069 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 9069 chr14 55753211 55753269 + 0 NA Intergenic Intergenic -13005 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 23405 chr5 142720758 142720872 + 0 NA Intergenic Intergenic -22745 NM_001144935 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 2544 chr1 208652389 208652493 + 0 NA Intergenic Intergenic -408121 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 31210 chrY 11310309 11310334 + 0 NA Intergenic BSR/Beta|Satellite|Satellite 1111269 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 362 chr1 23825458 23825512 + 0 NA promoter-TSS (NM_001166059) promoter-TSS (NM_001166059) -26 NM_001166059 3155 Hs.533444 NM_000191 ENSG00000117305 HMGCL HL 3-hydroxymethyl-3-methylglutaryl-CoA lyase protein-coding 30676 chrX 47658848 47658945 + 0 NA promoter-TSS (NR_028119) promoter-TSS (NR_028119) 63 NR_028119 100133957 Hs.546106 NR_027444 ENSG00000267064 UXT-AS1 - UXT antisense RNA 1 ncRNA 1379 chr1 98086826 98086930 + 0 NA Intergenic L2b|LINE|L2 -37185 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 12901 chr17 68463003 68463113 + 0 NA intron (NM_001278433, intron 1 of 10) intron (NM_001278433, intron 1 of 10) -5534 NM_001320772 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 13805 chr18 77067877 77067981 + 0 NA intron (NM_001025100, intron 2 of 3) intron (NM_001025100, intron 2 of 3) -50830 NM_001025092 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 30733 chrX 52995504 52995646 + 0 NA promoter-TSS (NM_001242489) promoter-TSS (NM_001242489) -103 NM_001242489 29057 Hs.6451 NM_014138 ENSG00000268350 FAM156A PRO0659|TMEM29 family with sequence similarity 156 member A protein-coding 27915 chr8 60678525 60678688 + 0 NA promoter-TSS (NM_017780) promoter-TSS (NM_017780) -159 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 26149 chr7 43577645 43577757 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -5392 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 21633 chr4 101357115 101357223 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 9392 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 30311 chr9 133147740 133147844 + 0 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) 1428 NM_001042368 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 18009 chr20 40563483 40563627 + 0 NA Intergenic Intergenic 125685 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 6397 chr11 133344055 133344146 + 0 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 188512 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 11093 chr16 19809228 19809329 + 0 NA intron (NR_130968, intron 7 of 8) MLT1H2|LTR|ERVL-MaLR 75633 NM_016235 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 12519 chr17 42428485 42428634 + 0 NA Intergenic Intergenic -5239 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 PTRF CAVIN|CAVIN1|CGL4|FKSG13|cavin-1 polymerase I and transcript release factor protein-coding 19510 chr3 50155032 50155168 + 0 NA promoter-TSS (NM_001318798) promoter-TSS (NM_001318798) 55 NM_001318798 6405 Hs.32981 NM_004186 ENSG00000001617 SEMA3F SEMA-IV|SEMA4|SEMAK semaphorin 3F protein-coding 5351 chr11 61730509 61730571 + 0 NA intron (NM_006133, intron 8 of 19) intron (NM_006133, intron 8 of 19) -22097 NM_001127392 745 Hs.473109 NM_013279 ENSG00000124920 MYRF C11orf9|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 24101 chr6 15949540 15949580 + 0 NA Intergenic Intergenic -179526 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 12355 chr17 34998354 34998458 + 0 NA intron (NM_013975, intron 13 of 19) intron (NM_013975, intron 13 of 19) 17908 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2 DNA ligase 3 protein-coding 4511 chr10 121326139 121326243 + 0 NA Intergenic Charlie15b|DNA|hAT-Charlie 205123 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 30427 chrUn_KI270510v1 30 177 + 0 NA NA ALR/Alpha|Satellite|centr NA NA 12298 chr17 30292114 30292218 + 0 NA promoter-TSS (NM_000386) promoter-TSS (NM_000386) 0 NM_000386 642 Hs.371914 NM_000386 ENSG00000108578 BLMH BH|BMH bleomycin hydrolase protein-coding 7844 chr12 124578103 124578207 + 0 NA Intergenic Intergenic -10691 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 21556 chr4 87092912 87093016 + 0 NA intron (NM_001166693, intron 7 of 20) intron (NM_001166693, intron 7 of 20) 85963 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 1167 chr1 81681678 81681857 + 0 NA Intergenic Intergenic -18003 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 1393 chr1 99599821 99599896 + 0 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -46017 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 18545 chr21 39348550 39348654 + 0 NA intron (NM_004965, intron 1 of 5) CpG-18403 519 NM_004965 3150 Hs.356285 NM_004965 ENSG00000205581 HMGN1 HMG14 high mobility group nucleosome binding domain 1 protein-coding 10382 chr15 70526688 70526833 + 0 NA Intergenic Intergenic 59846 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LOC101929151 - uncharacterized LOC101929151 ncRNA 24342 chr6 30769666 30769796 + 0 NA intron (NR_138037, intron 1 of 3) intron (NR_138037, intron 1 of 3) 2906 NR_138037 105375013 Hs.348584 NR_138037 ENSG00000228022 HCG20 NCRNA00149 HLA complex group 20 (non-protein coding) ncRNA 6705 chr12 18690801 18690929 + 0 NA intron (NM_033123, intron 12 of 14) L2c|LINE|L2 46644 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 20255 chr3 138921924 138922033 + 0 NA Intergenic MIR3|SINE|MIR 22042 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 15271 chr2 28662102 28662213 + 0 NA Intergenic Intergenic -89591 NM_206876 5500 Hs.702907 NM_002709 ENSG00000213639 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1 catalytic subunit beta protein-coding 20320 chr3 142958860 142959015 + 0 NA Intergenic Intergenic 4399 NM_198504 344838 Hs.408385 NM_198504 ENSG00000188582 PAQR9 - progestin and adipoQ receptor family member 9 protein-coding 20966 chr3 191360710 191360835 + 0 NA intron (NM_178335, intron 3 of 11) intron (NM_178335, intron 3 of 11) -30236 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 25881 chr7 24979505 24979609 + 0 NA intron (NM_015550, intron 1 of 22) CpG 655 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 14935 chr2 5165259 5165363 + 0 NA Intergenic Intergenic -509089 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 5248 chr11 47408097 47408201 + 0 NA promoter-TSS (NM_001128225) promoter-TSS (NM_001128225) -346 NM_152264 91252 Hs.523664 NM_152264 ENSG00000165915 SLC39A13 LZT-Hs9 solute carrier family 39 member 13 protein-coding 30908 chrX 104618207 104618336 + 0 NA intron (NM_017416, intron 1 of 10) L1PA15-16|LINE|L1 51956 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 10679 chr15 90005239 90005343 + 0 NA intron (NM_198526, intron 1 of 4) intron (NM_198526, intron 1 of 4) -1464 NR_036135 100422841 NR_036135 ENSG00000265871 MIR3174 - microRNA 3174 ncRNA 14014 chr19 7198092 7198296 + 0 NA intron (NM_001079817, intron 2 of 20) CpG 96108 NM_001079817 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 9353 chr14 73728857 73728994 + 0 NA intron (NM_001043318, intron 4 of 11) intron (NM_001043318, intron 4 of 11) -14500 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 paraneoplastic Ma antigen 1 protein-coding 5567 chr11 67584427 67584498 + 0 NA intron (NM_000852, intron 2 of 6) CpG-4572 867 NM_000852 2950 Hs.523836 NM_000852 ENSG00000084207 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding 12793 chr17 60037287 60037291 + 0 NA Intergenic L1MD2|LINE|L1 5816 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 10159 chr15 56887427 56887429 + 0 NA non-coding (NR_015419, exon 4 of 4) non-coding (NR_015419, exon 4 of 4) -30662 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20 transcription factor 12 protein-coding 31045 chrX 129522449 129522464 + 0 NA intron (NM_001282874, intron 1 of 24) intron (NM_001282874, intron 1 of 24) 1049 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 28840 chr8 144472399 144472567 + 0 NA exon (NM_145754, exon 15 of 17) exon (NM_145754, exon 15 of 17) 3852 NM_003923 8928 Hs.708365 NM_003923 ENSG00000160973 FOXH1 FAST-1|FAST1 forkhead box H1 protein-coding 13642 chr18 58221402 58221532 + 0 NA promoter-TSS (NM_001144966) promoter-TSS (NM_001144966) -55 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 20286 chr3 141368310 141368469 + 0 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) 44176 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 6805 chr12 28190347 28190498 + 0 NA promoter-TSS (NM_018318) promoter-TSS (NM_018318) -5 NM_018318 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 27577 chr8 26329943 26330039 + 0 NA intron (NM_002717, intron 2 of 9) intron (NM_002717, intron 2 of 9) 36775 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2 regulatory subunit Balpha protein-coding 13918 chr19 3055365 3055469 + 0 NA intron (NM_198969, intron 5 of 6) intron (NM_198969, intron 5 of 6) 6956 NM_001130 166 Hs.515053 NM_001130 ENSG00000104964 AES AES-1|AES-2|ESP1|GRG|GRG5|Grg-5|TLE5 amino-terminal enhancer of split protein-coding 2955 chr1 232600610 232600733 + 0 NA Intergenic Intergenic -85063 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 30715 chrX 49191069 49191173 + 0 NA intron (NM_003179, intron 6 of 6) intron (NM_003179, intron 6 of 6) -4721 NM_006150 4007 Hs.732712 NM_006150 ENSG00000012211 PRICKLE3 LMO6 prickle planar cell polarity protein 3 protein-coding 18409 chr20 63911274 63911429 + 0 NA intron (NM_025219, intron 1 of 4) intron (NM_025219, intron 1 of 4) -8098 NR_030637 100126329 NR_030637 ENSG00000283206 MIR941-1 MIRN941-1|mir-941-1 microRNA 941-1 ncRNA 4210 chr10 100043929 100044033 + 0 NA intron (NM_001308, intron 8 of 8) intron (NM_001308, intron 8 of 8) -34028 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 11012 chr16 11133419 11133523 + 0 NA intron (NM_015226, intron 21 of 22) intron (NM_015226, intron 21 of 22) 122711 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 29421 chr9 85213113 85213217 + 0 NA Intergenic Intergenic 528864 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 10831 chr15 101652227 101652342 + 0 NA exon (NM_001307960, exon 1 of 5) exon (NM_001307960, exon 1 of 5) 107 NM_078474 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 935 chr1 58546709 58546856 + 0 NA promoter-TSS (NM_145243) promoter-TSS (NM_145243) 17 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 20973 chr3 192273796 192273900 + 0 NA intron (NR_046596, intron 3 of 4) LFSINE_Vert|SINE|tRNA 35218 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13257 chr18 9673276 9673404 + 0 NA Intergenic Intergenic -34891 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 29026 chr9 32550962 32551066 + 0 NA promoter-TSS (NR_033991) promoter-TSS (NR_033991) -130 NR_033991 100129250 Hs.664395 NR_033991 ENSG00000235453 TOPORS-AS1 C9orf133 TOPORS antisense RNA 1 ncRNA 9825 chr15 31488937 31489041 + 0 NA intron (NM_130901, intron 11 of 13) intron (NM_130901, intron 11 of 13) 162134 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 11273 chr16 31873702 31873806 + 0 NA promoter-TSS (NM_001265588) promoter-TSS (NM_001265588) -4 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 15769 chr2 70553855 70553959 + 0 NA promoter-TSS (NM_001308159) promoter-TSS (NM_001308159) 108 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 17513 chr20 5008885 5008949 + 0 NA intron (NM_203327, intron 1 of 16) intron (NM_203327, intron 1 of 16) 1376 NM_203327 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2|hSVCT2 solute carrier family 23 member 2 protein-coding 2598 chr1 210882989 210883011 + 0 NA intron (NM_172362, intron 7 of 10) intron (NM_172362, intron 7 of 10) 251115 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 13794 chr18 76492928 76493074 + 0 NA non-coding (NR_136504, exon 2 of 2) non-coding (NR_136504, exon 2 of 2) 1349 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 19965 chr3 118544592 118544696 + 0 NA intron (NR_135547, intron 3 of 3) MLT2F|LTR|ERVL -97124 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 16528 chr2 159147376 159147480 + 0 NA intron (NM_001145909, intron 5 of 26) intron (NM_001145909, intron 5 of 26) -39407 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 17870 chr20 32742661 32742765 + 0 NA intron (NM_053041, intron 1 of 8) intron (NM_053041, intron 1 of 8) 1295 NM_001099339 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 4611 chr10 129642542 129642646 + 0 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 175410 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 31165 chrX 152941671 152941684 + 0 NA promoter-TSS (NM_001178115) promoter-TSS (NM_001178115) 6 NM_001178115 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 (LIM domain) protein-coding 13555 chr18 49597562 49597711 + 0 NA Intergenic Intergenic 35605 NM_001308006 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 21144 chr4 6640439 6640536 + 0 NA 5' UTR (NM_001272053, exon 1 of 3) 5' UTR (NM_001272053, exon 1 of 3) 396 NM_001272053 93621 Hs.406590 NM_033296 ENSG00000179010 MRFAP1 PAM14|PGR1 Morf4 family associated protein 1 protein-coding 11401 chr16 56608481 56608629 + 0 NA promoter-TSS (NM_005953) promoter-TSS (NM_005953) -11 NM_005953 4502 Hs.534330 NM_005953 ENSG00000125148 MT2A MT2 metallothionein 2A protein-coding 10173 chr15 57703608 57703712 + 0 NA intron (NR_104371, intron 13 of 16) intron (NR_104371, intron 13 of 16) -2861 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 2492 chr1 205749565 205749600 + 0 NA intron (NM_022731, intron 1 of 6) CpG 662 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 5192 chr11 40329369 40329398 + 0 NA intron (NM_020929, intron 2 of 4) L3|LINE|CR1 -36253 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 884 chr1 53238537 53238682 + 0 NA promoter-TSS (NM_002370) promoter-TSS (NM_002370) -1 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 8888 chr14 36582560 36582664 + 0 NA promoter-TSS (NM_014360) promoter-TSS (NM_014360) 2 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 22378 chr5 36442566 36442685 + 0 NA Intergenic MER61E|LTR|ERV1 -140716 NM_145000 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 24364 chr6 31580959 31581112 + 0 NA exon (NM_002341, exon 4 of 4).3 exon (NM_002341, exon 4 of 4).3 1390 NM_009588 4050 Hs.376208 NM_002341 ENSG00000227507 LTB TNFC|TNFSF3|TNLG1C|p33 lymphotoxin beta protein-coding 4910 chr11 15965687 15965791 + 0 NA TTS (NM_017508) TTS (NM_017508) 3882 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 17178 chr2 223957229 223957379 + 0 NA promoter-TSS (NM_022915) promoter-TSS (NM_022915) -100 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 15762 chr2 70248640 70248757 + 0 NA promoter-TSS (NM_022037) promoter-TSS (NM_022037) -51 NM_022173 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 28983 chr9 21836600 21836633 + 0 NA intron (NM_002451, intron 4 of 7) intron (NM_002451, intron 4 of 7) 33980 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 9625 chr14 96362169 96362273 + 0 NA intron (NM_018036, intron 1 of 41) intron (NM_018036, intron 1 of 41) 1180 NM_018036 55102 Hs.168241 NM_018036 ENSG00000066739 ATG2B C14orf103 autophagy related 2B protein-coding 4408 chr10 114634699 114634803 + 0 NA intron (NM_001322885, intron 1 of 20) intron (NM_001322885, intron 1 of 20) 23548 NM_002313 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 25001 chr6 109483164 109483268 + 0 NA promoter-TSS (NM_014797) promoter-TSS (NM_014797) 21 NM_001164313 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 6059 chr11 111183901 111184005 + 0 NA Intergenic MSTB-int|LTR|ERVL-MaLR -72029 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 25543 chr7 1556349 1556432 + 0 NA promoter-TSS (NM_001097620) promoter-TSS (NM_001097620) 40 NM_001097620 202915 Hs.592174 NM_152689 ENSG00000164855 TMEM184A SDMG1 transmembrane protein 184A protein-coding 12379 chr17 35764245 35764416 + 0 NA intron (NM_145272, intron 2 of 2) CpG 3433 NM_145272 146853 Hs.127194 NM_145272 ENSG00000270806 C17orf50 - chromosome 17 open reading frame 50 protein-coding 12116 chr17 12744548 12744642 + 0 NA intron (NM_153604, intron 8 of 12) intron (NM_153604, intron 8 of 12) -38460 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 10719 chr15 91491393 91491475 + 0 NA intron (NR_110106, intron 3 of 3) intron (NR_110106, intron 3 of 3) 28095 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 28678 chr8 130194752 130194938 + 0 NA intron (NM_001247996, intron 6 of 30) MER1B|DNA|hAT-Charlie 101688 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 29521 chr9 91060626 91060723 + 0 NA Intergenic Intergenic 14458 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 22621 chr5 62268276 62268380 + 0 NA Intergenic Intergenic -37834 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 21401 chr4 57081444 57081534 + 0 NA intron (NM_001253835, intron 1 of 3) intron (NM_001253835, intron 1 of 3) -28273 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 5286 chr11 57800607 57800766 + 0 NA intron (NM_001085458, intron 6 of 20) intron (NM_001085458, intron 6 of 20) 38924 NM_001085467 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 29774 chr9 107284004 107284108 + 0 NA promoter-TSS (NM_001244724) promoter-TSS (NM_001244724) 3 NM_001244724 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 13533 chr18 48548130 48548163 + 0 NA intron (NM_001142397, intron 2 of 12) intron (NM_001142397, intron 2 of 12) 9090 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 253 chr1 17245384 17245458 + 0 NA 3' UTR (NM_013358, exon 16 of 16) 3' UTR (NM_013358, exon 16 of 16) -3677 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3 peptidyl arginine deiminase 3 protein-coding 6685 chr12 15662796 15662900 + 0 NA intron (NM_004447, intron 8 of 20) MamSINE1|SINE|tRNA-RTE 116504 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase, receptor type O protein-coding 14431 chr19 38899576 38899680 + 0 NA promoter-TSS (NM_002503) promoter-TSS (NM_002503) -72 NM_001243116 4793 Hs.9731 NM_002503 ENSG00000104825 NFKBIB IKBB|TRIP9 NFKB inhibitor beta protein-coding 5928 chr11 96343239 96343348 + 0 NA promoter-TSS (NM_032427) promoter-TSS (NM_032427) -113 NM_032427 84441 Hs.428214 NM_032427 ENSG00000184384 MAML2 MAM-3|MAM2|MAM3|MLL-MAML2 mastermind like transcriptional coactivator 2 protein-coding 27418 chr8 13133363 13133409 + 0 NA promoter-TSS (NM_006094) promoter-TSS (NM_006094) -86 NM_006094 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 10163 chr15 57356799 57356903 + 0 NA Intergenic AluJo|SINE|Alu -19654 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 7223 chr12 64452938 64453066 + 0 NA intron (NM_013254, intron 1 of 20) intron (NM_013254, intron 1 of 20) 942 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|NAK|T2K TANK binding kinase 1 protein-coding 28364 chr8 103208012 103208192 + 0 NA intron (NM_001024372, intron 1 of 1) intron (NM_001024372, intron 1 of 1) -35962 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 - BAALC antisense RNA 1 ncRNA 63 chr1 3857285 3857454 + 0 NA promoter-TSS (NM_014704) promoter-TSS (NM_014704) 102 NM_001320136 1677 Hs.133089 NM_004402 ENSG00000169598 DFFB CAD|CPAN|DFF-40|DFF2|DFF40 DNA fragmentation factor subunit beta protein-coding 21915 chr4 152936170 152936274 + 0 NA intron (NR_136614, intron 1 of 1) CpG 615 NR_136614 729870 Hs.310357 NR_136614 LOC729870 - uncharacterized LOC729870 ncRNA 1637 chr1 145918645 145918749 + 0 NA promoter-TSS (NR_104034) promoter-TSS (NR_104034) -168 NM_001184795 8799 Hs.714608 NM_003846 ENSG00000131779 PEX11B PEX11-BETA|PEX14B peroxisomal biogenesis factor 11 beta protein-coding 13283 chr18 12838240 12838385 + 0 NA intron (NM_080423, intron 2 of 8) intron (NM_080423, intron 2 of 8) 2650 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase, non-receptor type 2 protein-coding 7919 chr12 132908537 132908577 + 0 NA Intergenic CpG 20715 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 15610 chr2 60468792 60468833 + 0 NA exon (NM_018014, exon 3 of 5) exon (NM_018014, exon 3 of 5) -77437 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000223929 MIR4432HG - MIR4432 host gene ncRNA 24461 chr6 36441526 36441668 + 0 NA intron (NM_152990, intron 1 of 4) intron (NM_152990, intron 1 of 4) -1170 NR_104480 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 16101 chr2 108957284 108957388 + 0 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 32036 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 6377 chr11 131423842 131423863 + 0 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) 53376 NM_001048209 50863 Hs.504352 NM_016522 ENSG00000182667 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 1105 chr1 69510161 69510304 + 0 NA Intergenic L2c|LINE|L2 -56953 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 28413 chr8 108443534 108443661 + 0 NA promoter-TSS (NM_001329494) promoter-TSS (NM_001329494) 14 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 19810 chr3 105944858 105944983 + 0 NA Intergenic L3|LINE|CR1 -75498 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 15813 chr2 73926049 73926203 + 0 NA promoter-TSS (NR_134894) promoter-TSS (NR_134894) -700 NM_001318859 1716 Hs.469022 NM_001929 ENSG00000114956 DGUOK MTDPS3|NCPH|PEOB4|dGK deoxyguanosine kinase protein-coding 9006 chr14 52370471 52370660 + 0 NA Intergenic Intergenic 56267 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 15160 chr2 20651153 20651235 + 0 NA promoter-TSS (NM_022460) promoter-TSS (NM_022460) -90 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 10497 chr15 78077150 78077303 + 0 NA intron (NM_015079, intron 1 of 12) CpG 426 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 26926 chr7 123191371 123191475 + 0 NA intron (NM_001324400, intron 1 of 17) intron (NM_001324400, intron 1 of 17) 8548 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 25450 chr6 161394042 161394146 + 0 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -76883 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 14270 chr19 18522340 18522370 + 0 NA promoter-TSS (NM_006532) promoter-TSS (NM_006532) -228 NM_006532 8178 Hs.515260 NM_006532 ENSG00000105656 ELL C19orf17|ELL1|MEN|PPP1R68 elongation factor for RNA polymerase II protein-coding 20415 chr3 151890945 151891049 + 0 NA intron (NR_110202, intron 1 of 3) LTR88b|LTR|Gypsy? 17354 NM_033050 56670 Hs.133181 NM_033050 ENSG00000198829 SUCNR1 GPR91 succinate receptor 1 protein-coding 11946 chr17 4143633 4143762 + 0 NA promoter-TSS (NM_015113) promoter-TSS (NM_015113) 76 NM_001254755 124936 Hs.513871 NM_144611 ENSG00000167740 CYB5D2 - cytochrome b5 domain containing 2 protein-coding 9711 chr14 102987424 102987497 + 0 NA intron (NM_006035, intron 5 of 36) L1ME3|LINE|L1 64804 NM_030943 81693 Hs.534494 NM_030943 ENSG00000166126 AMN PRO1028|amnionless amnion associated transmembrane protein protein-coding 2096 chr1 175029814 175029918 + 0 NA Intergenic Intergenic -6411 NR_037606 63931 Hs.654858 NM_022100 ENSG00000120333 MRPS14 DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 2805 chr1 224113965 224114112 + 0 NA promoter-TSS (NM_001136115) promoter-TSS (NM_001136115) -49 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 3776 chr10 63504274 63504350 + 0 NA intron (NM_001322258, intron 1 of 24) L2a|LINE|L2 -17051 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 18340 chr20 58981250 58981400 + 0 NA exon (NM_198976, exon 1 of 15) exon (NM_198976, exon 1 of 15) 117 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 1784 chr1 154272211 154272315 + 0 NA promoter-TSS (NM_001018837) promoter-TSS (NM_001018837) -300 NM_006118 10456 Hs.199625 NM_006118 ENSG00000143575 HAX1 HCLSBP1|HS1BP1|SCN3 HCLS1 associated protein X-1 protein-coding 26097 chr7 39733469 39733476 + 0 NA promoter-TSS (NR_026999) promoter-TSS (NR_026999) -96 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 938 chr1 58577376 58577487 + 0 NA promoter-TSS (NM_002353) promoter-TSS (NM_002353) 63 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 22116 chr4 186191328 186191432 + 0 NA promoter-TSS (NM_207352) promoter-TSS (NM_207352) 110 NR_046264 651430 Hs.727796 NR_046264 ENSG00000279943 FLJ38576 - uncharacterized LOC651430 ncRNA 19093 chr3 4987034 4987144 + 0 NA Intergenic CpG -7128 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 2149 chr1 180154775 180154792 + 0 NA promoter-TSS (NM_002826) promoter-TSS (NM_002826) -50 NM_002826 5768 Hs.744925 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 25999 chr7 32891649 32891835 + 0 NA 5' UTR (NM_015483, exon 1 of 4) 5' UTR (NM_015483, exon 1 of 4) 114 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 2241 chr1 185561725 185561775 + 0 NA intron (NR_110793, intron 3 of 3) MIRc|SINE|MIR 66738 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 22719 chr5 73626041 73626145 + 0 NA promoter-TSS (NM_001080479) promoter-TSS (NM_001080479) -65 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 22264 chr5 15009517 15009621 + 0 NA Intergenic Intergenic -137791 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 14438 chr19 39342017 39342121 + 0 NA promoter-TSS (NM_001303614) promoter-TSS (NM_001303614) -390 NM_001303614 55095 Hs.612332 NM_018028 ENSG00000179134 SAMD4B SMGB|Smaug2 sterile alpha motif domain containing 4B protein-coding 24494 chr6 37499764 37499868 + 0 NA intron (NM_138493, intron 1 of 3) CpG 108 NM_138493 154467 Hs.284207 NM_138493 ENSG00000198937 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 20401 chr3 150752001 150752140 + 0 NA intron (NM_005067, intron 1 of 1) intron (NM_005067, intron 1 of 1) 11406 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 15740 chr2 69437395 69437534 + 0 NA non-coding (NR_045632, exon 1 of 6) non-coding (NR_045632, exon 1 of 6) 164 NM_001002756 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 6466 chr12 3873367 3873538 + 0 NA promoter-TSS (NM_001286521) promoter-TSS (NM_001286521) -4 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 7456 chr12 94761666 94761770 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -72680 NR_030171 574449 NR_030171 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 6142 chr11 117907326 117907488 + 0 NA TTS (NM_001206790) TTS (NM_001206790) 22046 NM_001206790 84000 Hs.266308 NM_032046 ENSG00000137747 TMPRSS13 MSP|MSPL|MSPS|TMPRSS11 transmembrane protease, serine 13 protein-coding 2370 chr1 201397201 201397280 + 0 NA intron (NM_005558, intron 1 of 9) intron (NM_005558, intron 1 of 9) 2301 NM_005558 3898 Hs.519035 NM_005558 ENSG00000159166 LAD1 LadA ladinin 1 protein-coding 7825 chr12 123233253 123233357 + 0 NA promoter-TSS (NM_022782) promoter-TSS (NM_022782) 8 NM_152269 91574 Hs.319128 NM_152269 ENSG00000130921 C12orf65 COXPD7|SPG55 chromosome 12 open reading frame 65 protein-coding 18327 chr20 58127788 58127958 + 0 NA Intergenic Intergenic -23054 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 5199 chr11 43680578 43680742 + 0 NA promoter-TSS (NM_016142) promoter-TSS (NM_016142) 67 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 26379 chr7 70668772 70668833 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -463735 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 24217 chr6 26123007 26123208 + 0 NA TTS (NM_003526) TTS (NM_003526) 797 NM_003526 8347 Hs.658713 NM_003526 ENSG00000180596 HIST1H2BC H2B.1|H2B/l|H2BFL|dJ221C16.3 histone cluster 1 H2B family member c protein-coding 13325 chr18 23586427 23586545 + 0 NA 5' UTR (NM_000271, exon 1 of 25) 5' UTR (NM_000271, exon 1 of 25) 131 NM_000271 4864 Hs.464779 NM_000271 ENSG00000141458 NPC1 NPC NPC intracellular cholesterol transporter 1 protein-coding 1583 chr1 116879238 116879392 + 0 NA Intergenic Intergenic -30608 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 26726 chr7 101217588 101217661 + 0 NA promoter-TSS (NM_006349) promoter-TSS (NM_006349) -80 NM_006349 10467 Hs.211079 NM_006349 ENSG00000106400 ZNHIT1 CG1I|ZNFN4A1 zinc finger HIT-type containing 1 protein-coding 5740 chr11 82682617 82682723 + 0 NA Intergenic HUERS-P3b-int|LTR|ERV1 51194 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 7289 chr12 76470727 76470831 + 0 NA intron (NM_020841, intron 2 of 23) intron (NM_020841, intron 2 of 23) -47687 NM_001319655 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 23904 chr6 3209263 3209367 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -13548 NR_038295 100507194 Hs.678053 NR_038295 ENSG00000230269 LOC100507194 - uncharacterized LOC100507194 ncRNA 30713 chrX 49171823 49171927 + 0 NA promoter-TSS (NM_002668) promoter-TSS (NM_002668) 38 NM_002668 5355 Hs.77422 NM_002668 ENSG00000102007 PLP2 A4|A4LSB proteolipid protein 2 protein-coding 19433 chr3 44885683 44885787 + 0 NA intron (NM_003241, intron 2 of 13) intron (NM_003241, intron 2 of 13) 11129 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 8747 chr14 24094107 24094257 + 0 NA promoter-TSS (NM_001291556) promoter-TSS (NM_001291556) 51 NM_004563 5106 Hs.75812 NM_004563 ENSG00000100889 PCK2 PEPCK|PEPCK-M|PEPCK2 phosphoenolpyruvate carboxykinase 2, mitochondrial protein-coding 29552 chr9 92670156 92670302 + 0 NA promoter-TSS (NM_022755) promoter-TSS (NM_022755) 36 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 18349 chr20 59744258 59744362 + 0 NA intron (NM_183244, intron 2 of 12) intron (NM_183244, intron 2 of 12) 23100 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 5723 chr11 79493683 79493832 + 0 NA Intergenic Intergenic -53106 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 17137 chr2 220228776 220228903 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR -322274 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 21182 chr4 11614560 11614664 + 0 NA Intergenic Intergenic -185699 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 3610 chr10 43026261 43026295 + 0 NA Intergenic Intergenic 28715 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 4050 chr10 89352487 89352561 + 0 NA Intergenic MER72B|LTR|ERV1 20045 NM_001031683 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 6695 chr12 16350801 16350905 + 0 NA intron (NR_048547, intron 1 of 2) intron (NR_048547, intron 1 of 2) -2564 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 13860 chr19 1354756 1354916 + 0 NA promoter-TSS (NM_032853) promoter-TSS (NM_032853) -141 NM_032853 84939 Hs.515016 NM_032853 ENSG00000160953 MUM1 EXPAND1|HSPC211|MUM-1 melanoma associated antigen (mutated) 1 protein-coding 12308 chr17 31072309 31072421 + 0 NA Intergenic Intergenic 22060 NR_039886 100616266 NR_039886 ENSG00000265444 MIR4733 - microRNA 4733 ncRNA 11861 chr16 89972491 89972638 + 0 NA promoter-TSS (NR_003226) promoter-TSS (NR_003226) -16 NR_003226 172 Hs.534773 NM_001132 ENSG00000223959 AFG3L1P AFG3|AFG3L1 AFG3 like matrix AAA peptidase subunit 1, pseudogene pseudo 8977 chr14 50532635 50532749 + 0 NA promoter-TSS (NM_006575) promoter-TSS (NM_006575) -34 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 21964 chr4 161936747 161936879 + 0 NA intron (NM_020116, intron 3 of 15) HAL1|LINE|L1 -85920 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 18784 chr22 30327108 30327224 + 0 NA promoter-TSS (NM_001204240) promoter-TSS (NM_001204240) -200 NM_031937 83874 Hs.655273 NM_031937 ENSG00000099992 TBC1D10A EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 TBC1 domain family member 10A protein-coding 17877 chr20 33457275 33457415 + 0 NA Intergenic Intergenic -13453 NM_003098 6640 Hs.31121 NM_003098 ENSG00000101400 SNTA1 LQT12|SNT1|TACIP1|dJ1187J4.5 syntrophin alpha 1 protein-coding 18722 chr22 26483807 26483933 + 0 NA promoter-TSS (NM_001013694) promoter-TSS (NM_001013694) -7 NR_073135 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 29015 chr9 27626476 27626597 + 0 NA Intergenic Intergenic -52670 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENNL72|FTDALS|FTDALS1 chromosome 9 open reading frame 72 protein-coding 12829 chr17 63446100 63446187 + 0 NA promoter-TSS (NM_001017916) promoter-TSS (NM_001017916) 41 NM_001017916 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 28247 chr8 96235545 96235712 + 0 NA promoter-TSS (NM_001254752) promoter-TSS (NM_001254752) 6 NM_001254752 7381 Hs.131255 NM_006294 ENSG00000156467 UQCRB MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC ubiquinol-cytochrome c reductase binding protein protein-coding 20810 chr3 184135320 184135371 + 0 NA 5' UTR (NM_003907, exon 1 of 16) 5' UTR (NM_003907, exon 1 of 16) 323 NM_003907 8893 Hs.283551 NM_003907 ENSG00000145191 EIF2B5 CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM eukaryotic translation initiation factor 2B subunit epsilon protein-coding 14033 chr19 8362075 8362245 + 0 NA Intergenic Intergenic -1967 NR_104213 51129 Hs.9613 NM_016109 ENSG00000167772 ANGPTL4 ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158 angiopoietin like 4 protein-coding 4939 chr11 17063525 17063591 + 0 NA Intergenic Intergenic 11186 NR_000022 26822 NR_000022 ENSG00000272034 SNORD14A RNU14|RNU14A|U14|U14-S13-5 small nucleolar RNA, C/D box 14A snoRNA 8182 chr13 42696246 42696389 + 0 NA Intergenic Intergenic -85233 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 22858 chr5 90015627 90015714 + 0 NA TTS (NR_037433) TTS (NR_037433) 1050 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 18553 chr21 41767125 41767251 + 0 NA promoter-TSS (NM_020639) promoter-TSS (NM_020639) -99 NM_020639 54101 Hs.517310 NM_020639 ENSG00000183421 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor interacting serine/threonine kinase 4 protein-coding 22799 chr5 81751194 81751298 + 0 NA promoter-TSS (NM_001256732) promoter-TSS (NM_001256732) 7 NM_001256732 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 18587 chr21 45012469 45012573 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -7794 NR_024089 378825 Hs.534828 NR_024089 ENSG00000275874 PICSAR C21orf113|LINC00162|NCRNA00162|NLC1-C|NLC1C|PRED74 P38 inhibited cutaneous squamous cell carcinoma associated lincRNA ncRNA 1917 chr1 160781475 160781639 + 0 NA Intergenic Intergenic -14517 NM_002348 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 2993 chr1 234631975 234632038 + 0 NA intron (NR_033927, intron 1 of 1) MLT1K|LTR|ERVL-MaLR 2695 NR_033927 100302691 Hs.209162 NR_033927 ENSG00000224939 LINC00184 HANC|NCRNA00184 long intergenic non-protein coding RNA 184 ncRNA 26221 chr7 47534411 47534476 + 0 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 47701 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 18797 chr22 31107690 31107805 + 0 NA promoter-TSS (NM_080430) promoter-TSS (NM_080430) -160 NM_080430 140606 Hs.55940 NM_080430 ENSG00000198832 SELENOM SELM|SEPM selenoprotein M protein-coding 30826 chrX 72554531 72554635 + 0 NA intron (NM_001166418, intron 2 of 8) L1PBa|LINE|L1 18520 NM_001166448 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 30562 chrX 23118959 23119063 + 0 NA intron (NR_073010, intron 2 of 11) intron (NR_073010, intron 2 of 11) 119050 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 22226 chr5 10761219 10761323 + 0 NA promoter-TSS (NM_001291963) promoter-TSS (NM_001291963) 4 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 17892 chr20 34255713 34255813 + 0 NA Intergenic LTR13|LTR|ERVK -4602 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 13343 chr18 24397982 24398139 + 0 NA promoter-TSS (NM_080597) promoter-TSS (NM_080597) -191 NM_080597 114876 Hs.370725 NM_018030 ENSG00000141447 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein like 1A protein-coding 12718 chr17 55234067 55234171 + 0 NA Intergenic Intergenic -30841 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF, PAR bZIP transcription factor protein-coding 26749 chr7 103074749 103074846 + 0 NA promoter-TSS (NM_145032) promoter-TSS (NM_145032) 44 NM_001287150 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 2420 chr1 202927081 202927185 + 0 NA 5' UTR (NM_001303109, exon 1 of 10) 5' UTR (NM_001303109, exon 1 of 10) 139 NM_021633 59349 Hs.706793 NM_021633 ENSG00000117153 KLHL12 C3IP1|DKIR kelch like family member 12 protein-coding 14185 chr19 14518605 14518711 + 0 NA promoter-TSS (NM_001300914) promoter-TSS (NM_001300914) -99 NM_006145 3337 Hs.515210 NM_006145 ENSG00000132002 DNAJB1 HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 DnaJ heat shock protein family (Hsp40) member B1 protein-coding 17846 chr20 31610677 31610868 + 0 NA Intergenic Intergenic 3586 NR_036161 100422904 NR_036161 ENSG00000264395 MIR3193 - microRNA 3193 ncRNA 11472 chr16 66406909 66407013 + 0 NA Intergenic CpG -1563 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 900 chr1 54323508 54323612 + 0 NA intron (NM_145716, intron 4 of 17) intron (NM_145716, intron 4 of 17) 82835 NM_001009955 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 25018 chr6 111483685 111483736 + 0 NA promoter-TSS (NM_001286431) promoter-TSS (NM_001286431) 5 NM_001286432 5980 Hs.232021 NM_002912 ENSG00000009413 REV3L POLZ|REV3 REV3 like, DNA directed polymerase zeta catalytic subunit protein-coding 9888 chr15 38072805 38073000 + 0 NA Intergenic CpG 32509 NR_120330 101928227 Hs.602381 NR_120330 ENSG00000259225 LOC101928227 - uncharacterized LOC101928227 ncRNA 318 chr1 21324763 21324850 + 0 NA intron (NM_001113348, intron 1 of 18) intron (NM_001113348, intron 1 of 18) 20735 NM_001113348 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 13570 chr18 50287787 50287947 + 0 NA 5' UTR (NM_014593, exon 1 of 15) 5' UTR (NM_014593, exon 1 of 15) 455 NM_001101654 30827 Hs.180933 NM_014593 ENSG00000154832 CXXC1 2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP CXXC finger protein 1 protein-coding 31061 chrX 131617363 131617407 + 0 NA Intergenic Intergenic 73311 NM_001004486 347468 Hs.553711 NM_001004486 ENSG00000171054 OR13H1 ORX1 olfactory receptor family 13 subfamily H member 1 protein-coding 8823 chr14 33679750 33679854 + 0 NA intron (NM_001164749, intron 6 of 11) intron (NM_001164749, intron 6 of 11) -29135 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 27490 chr8 20128895 20128999 + 0 NA Intergenic L3|LINE|CR1 54259 NM_001135691 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 24646 chr6 47188750 47188928 + 0 NA Intergenic Intergenic 121108 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 7562 chr12 104263950 104264030 + 0 NA intron (NM_001093771, intron 3 of 16) intron (NM_001093771, intron 3 of 16) -22692 NM_182742 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 20552 chr3 160667580 160667684 + 0 NA Intergenic Intergenic -9528 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 8734 chr14 23366755 23366784 + 0 NA Intergenic Intergenic -1136 NM_032459 10278 Hs.24587 NM_005864 ENSG00000100842 EFS CAS3|CASS3|EFS1|EFS2|HEFS|SIN embryonal Fyn-associated substrate protein-coding 27180 chr7 147511066 147511155 + 0 NA intron (NM_014141, intron 11 of 23) intron (NM_014141, intron 11 of 23) -132989 NR_031645 100313895 NR_031645 ENSG00000221442 MIR548F4 MIR548F-4|MIRN548F4|hsa-mir-548f-4 microRNA 548f-4 ncRNA 15338 chr2 35783802 35783906 + 0 NA Intergenic LTR33|LTR|ERVL 312449 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 1774 chr1 153923001 153923206 + 0 NA promoter-TSS (NM_020699) promoter-TSS (NM_020699) -128 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding 21362 chr4 52712252 52712416 + 0 NA promoter-TSS (NR_039651) promoter-TSS (NR_039651) -60 NR_024031 57291 Hs.744077 NR_024031 ENSG00000226950 DANCR AGU2|ANCR|KIAA0114|SNHG13|lncRNA-ANCR differentiation antagonizing non-protein coding RNA ncRNA 25713 chr7 13991397 13991547 + 0 NA promoter-TSS (NM_001163148) promoter-TSS (NM_001163148) -47 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 22580 chr5 57889535 57889766 + 0 NA TTS (NR_109900) TTS (NR_109900) 9512 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 3888 chr10 73262286 73262340 + 0 NA intron (NM_145170, intron 26 of 27) MER44C|DNA|TcMar-Tigger 9572 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 6469 chr12 4031362 4031466 + 0 NA Intergenic (GCGCC)n|Simple_repeat|Simple_repeat -157966 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 30812 chrX 71095733 71095883 + 0 NA promoter-TSS (NM_001170931) promoter-TSS (NM_001170931) -341 NM_001170931 4303 Hs.584654 NM_005938 ENSG00000184481 FOXO4 AFX|AFX1|MLLT7 forkhead box O4 protein-coding 28316 chr8 100950463 100950652 + 0 NA promoter-TSS (NM_001135702) promoter-TSS (NM_001135702) 14 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 13537 chr18 48922949 48922963 + 0 NA intron (NM_001190821, intron 3 of 3) intron (NM_001190821, intron 3 of 3) 19851 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 10456 chr15 74995412 74995516 + 0 NA promoter-TSS (NM_001178111) promoter-TSS (NM_001178111) -71 NM_001178111 192683 Hs.374180 NM_138967 ENSG00000198794 SCAMP5 - secretory carrier membrane protein 5 protein-coding 1049 chr1 65425732 65425836 + 0 NA intron (NM_001003680, intron 2 of 19) L2c|LINE|L2 5068 NM_001198681 54741 Hs.23581 NM_017526 ENSG00000213625 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 21867 chr4 145619336 145619467 + 0 NA promoter-TSS (NM_172250) promoter-TSS (NM_172250) 13 NM_172250 166785 Hs.452864 NM_172250 ENSG00000151611 MMAA cblA methylmalonic aciduria (cobalamin deficiency) cblA type protein-coding 4544 chr10 123008953 123009057 + 0 NA promoter-TSS (NR_073475) promoter-TSS (NR_073475) 92 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase, short/branched chain protein-coding 25113 chr6 125867671 125867810 + 0 NA intron (NM_181782, intron 3 of 15) intron (NM_181782, intron 3 of 15) -48882 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 25508 chr6 170554164 170554354 + 0 NA promoter-TSS (NM_002793) promoter-TSS (NM_002793) -74 NM_001172085 6908 Hs.590872 NM_003194 ENSG00000112592 TBP GTF2D|GTF2D1|HDL4|SCA17|TFIID TATA-box binding protein protein-coding 11994 chr17 5759476 5759580 + 0 NA Intergenic Intergenic -12706 NR_040000 339166 Hs.736088 NR_040000 ENSG00000179314 LOC339166 - uncharacterized LOC339166 ncRNA 25210 chr6 138035061 138035165 + 0 NA Intergenic Intergenic 72410 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 1488 chr1 110098718 110098822 + 0 NA intron (NR_126382, intron 1 of 3) intron (NR_126382, intron 1 of 3) -13670 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 28530 chr8 120971081 120971185 + 0 NA Intergenic Intergenic -159064 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 20112 chr3 128965967 128966071 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 28124 NM_020741 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 13920 chr19 3136074 3136190 + 0 NA promoter-TSS (NM_002068) promoter-TSS (NM_002068) 100 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 G protein subunit alpha 15 protein-coding 27713 chr8 38937107 38937211 + 0 NA intron (NM_021623, intron 3 of 11) intron (NM_021623, intron 3 of 11) 35924 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing A2 protein-coding 14637 chr19 48170456 48170634 + 0 NA promoter-TSS (NM_000234) promoter-TSS (NM_000234) 58 NM_001289063 3978 Hs.1770 NM_000234 ENSG00000105486 LIG1 - DNA ligase 1 protein-coding 10355 chr15 69160466 69160572 + 0 NA promoter-TSS (NM_001324093) promoter-TSS (NM_001324093) -78 NM_015554 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 2725 chr1 219702687 219702813 + 0 NA Intergenic L2b|LINE|L2 -145426 NR_135822 102723886 Hs.525963 NR_135822 LOC102723886 - uncharacterized LOC102723886 ncRNA 3892 chr10 73495633 73495772 + 0 NA promoter-TSS (NR_132103) promoter-TSS (NR_132103) -50 NR_132103 101929145 Hs.434502 NR_132103 ENSG00000221817 PPP3CB-AS1 USP54-AS1 PPP3CB antisense RNA 1 (head to head) ncRNA 16972 chr2 206230518 206230557 + 0 NA intron (NR_104359, intron 1 of 5) LTR88c|LTR|Gypsy? -12490 NM_005279 2825 Hs.184907 NM_005279 ENSG00000183671 GPR1 - G protein-coupled receptor 1 protein-coding 4932 chr11 16923991 16924095 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 90373 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 4316 chr10 105952301 105952405 + 0 NA Intergenic MER57C1|LTR|ERV1 -132020 NR_120625 101927549 Hs.556885 NR_120625 LOC101927549 - uncharacterized LOC101927549 ncRNA 8162 chr13 41061767 41061800 + 0 NA intron (NM_007187, intron 1 of 9) CpG-6624 222 NM_007187 11193 Hs.411300 NM_007187 ENSG00000120688 WBP4 FBP21 WW domain binding protein 4 protein-coding 17328 chr2 236078532 236078558 + 0 NA intron (NM_001037131, intron 16 of 17) intron (NM_001037131, intron 16 of 17) 89464 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 5911 chr11 95836108 95836259 + 0 NA exon (NM_001243571, exon 17 of 18) exon (NM_001243571, exon 17 of 18) 45722 NM_001243777 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 2616 chr1 211735842 211736013 + 0 NA Intergenic MIRc|SINE|MIR -60297 NM_001204182 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 3362 chr10 17644084 17644271 + 0 NA promoter-TSS (NM_001324286) promoter-TSS (NM_001324286) 52 NM_001324288 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 19768 chr3 100844348 100844433 + 0 NA intron (NM_015429, intron 18 of 34) intron (NM_015429, intron 18 of 34) 134848 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 TRK-fused gene protein-coding 1408 chr1 100352267 100352398 + 0 NA promoter-TSS (NM_033313) promoter-TSS (NM_033313) -135 NM_003672 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|cdc14|hCDC14 cell division cycle 14A protein-coding 11193 chr16 29692064 29692216 + 0 NA intron (NM_001318249, intron 1 of 2) intron (NM_001318249, intron 1 of 2) 13132 NR_134536 23475 Hs.513484 NM_014298 ENSG00000103485 QPRT HEL-S-90n|QPRTase quinolinate phosphoribosyltransferase protein-coding 25976 chr7 30594777 30594840 + 0 NA promoter-TSS (NM_002047) promoter-TSS (NM_002047) 73 NM_001316772 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 25128 chr6 127343277 127343389 + 0 NA promoter-TSS (NM_001139510) promoter-TSS (NM_001139510) 276 NM_001105544 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 25393 chr6 156777209 156777343 + 0 NA promoter-TSS (NM_017519) promoter-TSS (NM_017519) -579 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 578 chr1 33127327 33127442 + 0 NA Intergenic CpG 45206 NM_001301826 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 695 chr1 40039956 40040073 + 0 NA promoter-TSS (NM_001105530) promoter-TSS (NM_001105530) -569 NM_001105530 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN adenylate cyclase associated protein 1 protein-coding 4418 chr10 116080733 116080837 + 0 NA intron (NM_001145453, intron 8 of 9) MER21C|LTR|ERVL 191522 NM_145793 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 27740 chr8 41818827 41818977 + 0 NA intron (NM_001142446, intron 1 of 42) MER61E|LTR|ERV1 -21280 NM_020476 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 26300 chr7 54967475 54967620 + 0 NA Intergenic Intergenic -51474 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 30174 chr9 128191576 128191680 + 0 NA promoter-TSS (NM_001131018) promoter-TSS (NM_001131018) -39 NM_001131017 25792 Hs.212395 NM_012127 ENSG00000148337 CIZ1 LSFR1|NP94|ZNF356 CDKN1A interacting zinc finger protein 1 protein-coding 15037 chr2 12456423 12456569 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 257366 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 11997 chr17 5837243 5837347 + 0 NA intron (NR_040000, intron 2 of 3) intron (NR_040000, intron 2 of 3) 65061 NR_040000 339166 Hs.736088 NR_040000 ENSG00000179314 LOC339166 - uncharacterized LOC339166 ncRNA 23410 chr5 142960484 142960588 + 0 NA intron (NM_015071, intron 11 of 22) Tigger7|DNA|TcMar-Tigger -91626 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 15132 chr2 19990111 19990221 + 0 NA promoter-TSS (NM_001006657) promoter-TSS (NM_001006657) -38 NR_110235 101928222 Hs.6985 NR_110235 LOC101928222 - uncharacterized LOC101928222 ncRNA 5372 chr11 62591739 62591754 + 0 NA promoter-TSS (NM_022830) promoter-TSS (NM_022830) -109 NM_022830 64852 Hs.728983 NM_022830 ENSG00000149016 TUT1 PAPD2|RBM21|STARPAP|TUTase|URLC6 terminal uridylyl transferase 1, U6 snRNA-specific protein-coding 25238 chr6 141421510 141421614 + 0 NA Intergenic L1ME3A|LINE|L1 667237 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 18892 chr22 38203162 38203302 + 0 NA intron (NM_001161573, intron 1 of 2) intron (NM_001161573, intron 1 of 2) 212 NM_001161573 23764 Hs.517617 NM_012323 ENSG00000185022 MAFF U-MAF|hMafF MAF bZIP transcription factor F protein-coding 11526 chr16 68310870 68311018 + 0 NA promoter-TSS (NM_001184824) promoter-TSS (NM_001184824) 21 NM_032178 84138 Hs.729520 NM_032178 ENSG00000103061 SLC7A6OS - solute carrier family 7 member 6 opposite strand protein-coding 30144 chr9 127452262 127452264 + 0 NA promoter-TSS (NM_000976) promoter-TSS (NM_000976) 8 NM_001005374 90678 Hs.495188 NM_138361 ENSG00000148356 LRSAM1 CMT2P|RIFLE|TAL leucine rich repeat and sterile alpha motif containing 1 protein-coding 9144 chr14 61321707 61321855 + 0 NA 5' UTR (NM_006255, exon 1 of 14) 5' UTR (NM_006255, exon 1 of 14) 338 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 11613 chr16 73015739 73015843 + 0 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 32584 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 3137 chr1 246609016 246609173 + 0 NA intron (NM_152609, intron 2 of 10) intron (NM_152609, intron 2 of 10) 42757 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 20352 chr3 148379920 148380024 + 0 NA Intergenic Intergenic 301813 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 23848 chr5 181223175 181223298 + 0 NA promoter-TSS (NR_039781) promoter-TSS (NR_039781) -27 NM_201627 90933 Hs.441488 NM_033549 ENSG00000146063 TRIM41 RINCK tripartite motif containing 41 protein-coding 17682 chr20 17558733 17558837 + 0 NA 5' UTR (NM_001161705, exon 1 of 8) 5' UTR (NM_001161705, exon 1 of 8) 175 NM_001278607 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 861 chr1 51236173 51236329 + 0 NA promoter-TSS (NM_014372) promoter-TSS (NM_014372) -22 NM_014372 26994 Hs.309641 NM_014372 ENSG00000123091 RNF11 CGI-123|SID1669 ring finger protein 11 protein-coding 337 chr1 22704642 22704746 + 0 NA Intergenic Intergenic -6144 NM_004442 2048 Hs.380705 NM_004442 ENSG00000133216 EPHB2 CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5 EPH receptor B2 protein-coding 10887 chr16 2340783 2340949 + 0 NA promoter-TSS (NM_001089) promoter-TSS (NM_001089) -56 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 10798 chr15 99476574 99476678 + 0 NA Intergenic Intergenic -89302 NM_001130927 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 10146 chr15 55999770 55999904 + 0 NA Intergenic LTR16E2|LTR|ERVL -6091 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding 13864 chr19 1479208 1479380 + 0 NA promoter-TSS (NM_152482) promoter-TSS (NM_152482) -65 NM_152482 148223 Hs.532840 NM_152482 ENSG00000119559 C19orf25 - chromosome 19 open reading frame 25 protein-coding 3172 chr10 1036432 1036536 + 0 NA intron (NR_027709, intron 3 of 4) L2b|LINE|L2 -10625 NM_033261 91734 Hs.9270 NM_033261 ENSG00000148377 IDI2 IPPI2 isopentenyl-diphosphate delta isomerase 2 protein-coding 18739 chr22 27726740 27726910 + 0 NA Intergenic Intergenic 74673 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 11542 chr16 68756352 68756498 + 0 NA intron (NM_004360, intron 2 of 15) intron (NM_004360, intron 2 of 15) 13909 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 9852 chr15 34239487 34239631 + 0 NA intron (NM_001042494, intron 19 of 25) intron (NM_001042494, intron 19 of 25) 14562 NM_001286420 51234 Hs.250905 NM_016454 ENSG00000128463 EMC4 PIG17|TMEM85 ER membrane protein complex subunit 4 protein-coding 571 chr1 32992533 32992680 + 0 NA Intergenic Intergenic -27793 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 6331 chr11 129143431 129143584 + 0 NA intron (NM_001142685, intron 2 of 21) MER44C|DNA|TcMar-Tigger 48691 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 15198 chr2 25878605 25878754 + 0 NA promoter-TSS (NM_018263) promoter-TSS (NM_018263) -236 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS additional sex combs like 2, transcriptional regulator protein-coding 9703 chr14 102317065 102317077 + 0 NA promoter-TSS (NM_001267827) promoter-TSS (NM_001267827) -306 NM_001267827 55778 Hs.743359 NM_018335 ENSG00000022976 ZNF839 C14orf131 zinc finger protein 839 protein-coding 1190 chr1 84620694 84620791 + 0 NA intron (NR_125761, intron 1 of 2) CpG 289 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 28863 chr9 336127 336238 + 0 NA intron (NM_001193536, intron 10 of 46) intron (NM_001193536, intron 10 of 46) 63134 NM_001193536 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 5428 chr11 64240955 64241069 + 0 NA promoter-TSS (NM_001135208) promoter-TSS (NM_001135208) 71 NM_004470 2286 Hs.227729 NM_004470 ENSG00000173486 FKBP2 FKBP-13|PPIase FK506 binding protein 2 protein-coding 25162 chr6 132799074 132799237 + 0 NA promoter-TSS (NM_052831) promoter-TSS (NM_052831) -547 NM_052831 116843 Hs.347144 NM_052831 ENSG00000146409 SLC18B1 C6orf192|dJ55C23.6 solute carrier family 18 member B1 protein-coding 6091 chr11 112226287 112226420 + 0 NA promoter-TSS (NM_000317) promoter-TSS (NM_000317) -12 NM_000317 5805 Hs.503860 NM_000317 ENSG00000150787 PTS PTPS 6-pyruvoyltetrahydropterin synthase protein-coding 12542 chr17 43457998 43458137 + 0 NA Intergenic Intergenic 13261 NR_031751 100313779 NR_031751 ENSG00000267151 MIR2117 - microRNA 2117 ncRNA 7200 chr12 62603159 62603310 + 0 NA promoter-TSS (NR_029661) promoter-TSS (NR_029661) 200 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 1171 chr1 81801324 81801449 + 0 NA intron (NM_001330645, intron 1 of 20) CpG 989 NM_012302 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 19877 chr3 111904819 111904923 + 0 NA intron (NM_001134439, intron 2 of 17) intron (NM_001134439, intron 2 of 17) 45150 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 5715 chr11 78646714 78646862 + 0 NA Intergenic Intergenic -71924 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 24764 chr6 69797067 69797215 + 0 NA promoter-TSS (NM_018368) promoter-TSS (NM_018368) 16 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 21854 chr4 143359054 143359207 + 0 NA intron (NM_207123, intron 1 of 10) intron (NM_207123, intron 1 of 10) 15670 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 13774 chr18 74147776 74147923 + 0 NA promoter-TSS (NM_152676) promoter-TSS (NM_152676) 16 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 21718 chr4 113762581 113762712 + 0 NA promoter-TSS (NM_001221) promoter-TSS (NM_001221) -719 NM_001221 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 236 chr1 16624095 16624228 + 0 NA intron (NR_026752, intron 5 of 6) intron (NR_026752, intron 5 of 6) 6745 NR_026752 84809 Hs.631865 NR_026752 CROCCP2 CROCCL1 ciliary rootlet coiled-coil, rootletin pseudogene 2 pseudo 10960 chr16 4767202 4767354 + 0 NA promoter-TSS (NM_021646) promoter-TSS (NM_021646) -60 NM_021646 26048 Hs.513316 NM_021646 ENSG00000103199 ZNF500 ZKSCAN18|ZSCAN50 zinc finger protein 500 protein-coding 1608 chr1 119648290 119648412 + 0 NA promoter-TSS (NM_001080470) promoter-TSS (NM_001080470) -584 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 30637 chrX 41923538 41923709 + 0 NA promoter-TSS (NM_001126054) promoter-TSS (NM_001126054) -589 NM_001126054 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8 calcium/calmodulin dependent serine protein kinase protein-coding 30513 chrX 15142367 15142471 + 0 NA Intergenic Intergenic 127752 NM_001168530 140462 Hs.19404 NM_024087 ENSG00000102048 ASB9 - ankyrin repeat and SOCS box containing 9 protein-coding 15048 chr2 12971002 12971083 + 0 NA intron (NR_038434, intron 5 of 5) MLT1H|LTR|ERVL-MaLR 35971 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 2474 chr1 205175543 205175690 + 0 NA intron (NM_015375, intron 2 of 12) intron (NM_015375, intron 2 of 12) 35983 NM_015375 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5 dual serine/threonine and tyrosine protein kinase protein-coding 25245 chr6 142372465 142372569 + 0 NA intron (NM_001032394, intron 4 of 24) intron (NM_001032394, intron 4 of 24) 70598 NM_001032395 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 24530 chr6 41318913 41319071 + 0 NA Intergenic Intergenic -16798 NM_004828 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 29929 chr9 114552080 114552214 + 0 NA Intergenic Intergenic -35567 NM_004888 9550 Hs.388654 NM_004888 ENSG00000136888 ATP6V1G1 ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10 ATPase H+ transporting V1 subunit G1 protein-coding 14087 chr19 10701360 10701508 + 0 NA promoter-TSS (NM_031209) promoter-TSS (NM_031209) -2 NM_031209 81890 Hs.631638 NM_031209 ENSG00000213339 QTRT1 FP3235|TGT|TGUT queuine tRNA-ribosyltransferase catalytic subunit 1 protein-coding 24346 chr6 30828582 30828625 + 0 NA intron (NR_130726, intron 1 of 1) intron (NR_130726, intron 1 of 1) 2056 NR_130726 401247 NR_130726 ENSG00000214894 LINC00243 C6orf214|NCRNA00243 long intergenic non-protein coding RNA 243 ncRNA 18846 chr22 36388232 36388292 + 0 NA promoter-TSS (NM_002473) promoter-TSS (NM_002473) -195 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 30001 chr9 117957464 117957568 + 0 NA Intergenic Intergenic 253341 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 24069 chr6 13574376 13574520 + 0 NA promoter-TSS (NM_031244) promoter-TSS (NM_031244) -81 NM_001193267 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 6957 chr12 48904034 48904138 + 0 NA promoter-TSS (NM_001286957) promoter-TSS (NM_001286957) -24 NM_033124 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 4766 chr11 7612754 7612842 + 0 NA intron (NM_001256569, intron 2 of 19) intron (NM_001256569, intron 2 of 19) 7064 NM_001256569 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 9585 chr14 93333000 93333113 + 0 NA promoter-TSS (NM_001002860) promoter-TSS (NM_001002860) 36 NM_001002860 55727 Hs.525549 NM_018167 ENSG00000011114 BTBD7 FUP1 BTB domain containing 7 protein-coding 29450 chr9 86792245 86792323 + 0 NA Intergenic Intergenic 154905 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 7045 chr12 52927409 52927429 + 0 NA promoter-TSS (NM_001256282) promoter-TSS (NM_001256282) -950 NM_001256282 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 14120 chr19 11529142 11529240 + 0 NA promoter-TSS (NM_001243204) promoter-TSS (NM_001243204) -19 NM_001142465 51295 Hs.515146 NM_016581 ENSG00000130159 ECSIT SITPEC ECSIT signalling integrator protein-coding 7504 chr12 99027617 99027750 + 0 NA intron (NM_152788, intron 17 of 25) MIRc|SINE|MIR -65676 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 23836 chr5 180328795 180328882 + 0 NA intron (NM_005110, intron 6 of 18) MIRb|SINE|MIR 24549 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 8944 chr14 49173859 49174004 + 0 NA Intergenic L1MA8|LINE|L1 412485 NM_001032 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 25928 chr7 27423395 27423499 + 0 NA Intergenic Intergenic -176218 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 11598 chr16 71809061 71809215 + 0 NA promoter-TSS (NM_001128) promoter-TSS (NM_001128) -65 NM_001128 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 gamma 1 subunit protein-coding 18459 chr21 29300140 29300268 + 0 NA intron (NM_206866, intron 1 of 4) intron (NM_206866, intron 1 of 4) 788 NM_206866 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 26877 chr7 116524748 116524852 + 0 NA promoter-TSS (NM_001753) promoter-TSS (NM_001753) 15 NM_001753 857 Hs.74034 NM_001753 ENSG00000105974 CAV1 BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21 caveolin 1 protein-coding 27347 chr8 8296268 8296372 + 0 NA Intergenic Intergenic 67750 NR_024363 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 2776 chr1 222713274 222713413 + 0 NA promoter-TSS (NM_022831) promoter-TSS (NM_022831) 22 NM_001288581 148362 Hs.534965 NM_144695 ENSG00000162819 BROX C1orf58 BRO1 domain and CAAX motif containing protein-coding 18400 chr20 63627119 63627290 + 0 NA promoter-TSS (NM_012384) promoter-TSS (NM_012384) -31 NR_132418 100505771 Hs.448392 NR_132417 ENSG00000232442 LOC100505771 - uncharacterized LOC100505771 ncRNA 14666 chr19 48875281 48875385 + 0 NA intron (NM_014330, intron 2 of 2) intron (NM_014330, intron 2 of 2) 2941 NM_014330 23645 Hs.631593 NM_014330 ENSG00000087074 PPP1R15A GADD34 protein phosphatase 1 regulatory subunit 15A protein-coding 4443 chr10 118046865 118047026 + 0 NA promoter-TSS (NM_014904) promoter-TSS (NM_014904) -61 NM_001330167 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 7747 chr12 120262386 120262490 + 0 NA intron (NM_001080855, intron 1 of 11) intron (NM_001080855, intron 1 of 11) 3333 NM_002859 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 28124 chr8 85463278 85463433 + 0 NA promoter-TSS (NM_001293675) promoter-TSS (NM_001293675) -301 NR_121633 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 24709 chr6 53544968 53545093 + 0 NA promoter-TSS (NM_001498) promoter-TSS (NM_001498) 99 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 24858 chr6 83067607 83067757 + 0 NA promoter-TSS (NM_015018) promoter-TSS (NM_015018) 16 NM_001199942 23033 Hs.520246 NM_015018 ENSG00000083097 DOPEY1 DOP1|KIAA1117|dJ202D23.2 dopey family member 1 protein-coding 9522 chr14 88994136 88994240 + 0 NA Intergenic MER102c|DNA|hAT-Charlie 170035 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 28578 chr8 124440457 124440561 + 0 NA Intergenic Intergenic -10298 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 12685 chr17 50768502 50768640 + 0 NA promoter-TSS (NR_107026) promoter-TSS (NR_107026) -79 NR_107026 102466918 NR_107026 ENSG00000278672 MIR8059 hsa-mir-8059 microRNA 8059 ncRNA 24205 chr6 25458681 25458749 + 0 NA intron (NM_001173977, intron 8 of 36) MIR|SINE|MIR 179287 NM_001173977 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 22196 chr5 9348432 9348536 + 0 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -162849 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 17365 chr2 238290260 238290454 + 0 NA Intergenic Intergenic -1791 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 3763 chr10 62454817 62454921 + 0 NA intron (NM_199451, intron 3 of 7) L2c|LINE|L2 -65579 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 29004 chr9 26947135 26947239 + 0 NA promoter-TSS (NM_001099222) promoter-TSS (NM_001099222) -125 NM_001099222 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 14388 chr19 36128008 36128143 + 0 NA Intergenic CpG -11851 NM_001003962 826 Hs.515371 NM_001749 ENSG00000126247 CAPNS1 CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain small subunit 1 protein-coding 27830 chr8 52941694 52941798 + 0 NA TTS (NM_005285) TTS (NM_005285) 1838 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 15840 chr2 74740830 74740968 + 0 NA Intergenic Intergenic 86671 NR_073398 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 14690 chr19 49474162 49474265 + 0 NA promoter-TSS (NM_001278638) promoter-TSS (NM_001278638) 4 NM_001278638 2323 Hs.428 NM_001459 ENSG00000090554 FLT3LG FL|FLT3L fms related tyrosine kinase 3 ligand protein-coding 8200 chr13 44577459 44577592 + 0 NA promoter-TSS (NM_183422) promoter-TSS (NM_183422) -960 NM_183422 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 12460 chr17 40314704 40314811 + 0 NA intron (NM_000964, intron 1 of 8) intron (NM_000964, intron 1 of 8) -3464 NM_001145302 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 9802 chr15 29671153 29671257 + 0 NA Intergenic MER21C|LTR|ERVL -3730 NR_135221 100130111 Hs.525720 NR_135221 ENSG00000256802 LOC100130111 - uncharacterized LOC100130111 ncRNA 10539 chr15 80679568 80679682 + 0 NA Intergenic MER41B|LTR|ERV1 -15686 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 3925 chr10 75235918 75236044 + 0 NA promoter-TSS (NM_144589) promoter-TSS (NM_144589) 31 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 30048 chr9 121720477 121720617 + 0 NA intron (NM_032552, intron 3 of 16) MIRb|SINE|MIR -22238 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 10513 chr15 78988623 78988784 + 0 NA intron (NM_002891, intron 23 of 27) intron (NM_002891, intron 23 of 27) 16957 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 12927 chr17 71438874 71438978 + 0 NA Intergenic Intergenic -236747 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 28306 chr8 100642464 100642573 + 0 NA intron (NM_152628, intron 2 of 13) intron (NM_152628, intron 2 of 13) 7147 NM_152628 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 15191 chr2 25362164 25362274 + 0 NA Intergenic Intergenic -19629 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 21958 chr4 159102998 159103160 + 0 NA Intergenic CpG -25726 NR_039963 100616303 NR_039963 ENSG00000283379 MIR3688-2 mir-3688-2 microRNA 3688-2 ncRNA 7870 chr12 126493506 126493610 + 0 NA Intergenic L2b|LINE|L2 51077 NR_130748 100128554 Hs.408255 NR_015398 ENSG00000214043 LOC100128554 - uncharacterized LOC100128554 ncRNA 19540 chr3 52062689 52062765 + 0 NA non-coding (NR_027331, exon 1 of 1) non-coding (NR_027331, exon 1 of 1) 2385 NR_027331 100128378 Hs.640106 NM_001123039 LINC00696 C3orf74 long intergenic non-protein coding RNA 696 ncRNA 3602 chr10 42552767 42552913 + 0 NA promoter-TSS (NR_026777) promoter-TSS (NR_026777) 30 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 1446 chr1 108107798 108107902 + 0 NA Intergenic Intergenic 84959 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1 solute carrier family 25 member 24 protein-coding 3258 chr10 6729189 6729293 + 0 NA Intergenic Intergenic -8141 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in nonhomologous end joining pathway 1 ncRNA 8762 chr14 24317442 24317489 + 0 NA TTS (NM_139247) TTS (NM_139247) 4358 NM_181657 1241 Hs.567248 NM_181657 ENSG00000213903 LTB4R BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7 leukotriene B4 receptor protein-coding 8308 chr13 53191236 53191393 + 0 NA Intergenic Intergenic -39414 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 17387 chr2 240370323 240370427 + 0 NA Intergenic Intergenic -65323 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 17105 chr2 218659548 218659652 + 0 NA promoter-TSS (NM_001257342) promoter-TSS (NM_001257342) 32 NR_073599 7701 Hs.657969 NM_005081 ENSG00000115568 ZNF142 pHZ-49 zinc finger protein 142 protein-coding 21821 chr4 139082984 139083122 + 0 NA intron (NM_001331036, intron 4 of 9) CpG 1361 NM_006874 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 24335 chr6 30720127 30720308 + 0 NA promoter-TSS (NM_001293213) promoter-TSS (NM_001293213) 16 NR_120608 203068 Hs.636480 NM_178014 ENSG00000196230 TUBB CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5 tubulin beta class I protein-coding 19218 chr3 16101685 16101789 + 0 NA Intergenic LTR10F|LTR|ERV1 -72585 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 8669 chr14 20682782 20682921 + 0 NA Intergenic CpG -1326 NM_001145 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 8961 chr14 49950972 49951103 + 0 NA Intergenic Intergenic -15362 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 6303 chr11 126354006 126354110 + 0 NA intron (NR_033839, intron 1 of 1) L2a|LINE|L2 1529 NR_033839 399972 Hs.585206 NR_033839 ST3GAL4-AS1 DCPS-AS1 ST3GAL4 antisense RNA 1 (head to head) ncRNA 6594 chr12 10385575 10385623 + 0 NA intron (NR_120430, intron 3 of 3) L1MA5|LINE|L1 4455 NM_007360 22914 Hs.387787 NM_007360 ENSG00000213809 KLRK1 CD314|D12S2489E|KLR|NKG2-D|NKG2D killer cell lectin like receptor K1 protein-coding 438 chr1 26907661 26907765 + 0 NA Intergenic Intergenic 6363 NM_021969 8431 Hs.427055 NM_021969 ENSG00000131910 NR0B2 SHP|SHP1 nuclear receptor subfamily 0 group B member 2 protein-coding 14351 chr19 33291171 33291271 + 0 NA Intergenic Intergenic 11343 NM_001287424 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT/enhancer binding protein alpha protein-coding 5861 chr11 93842489 93842642 + 0 NA intron (NM_001144871, intron 1 of 3) intron (NM_001144871, intron 1 of 3) 7937 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 26488 chr7 80278031 80278135 + 0 NA Intergenic Intergenic 96356 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 15241 chr2 27682345 27682498 + 0 NA intron (NM_018158, intron 9 of 13) intron (NM_018158, intron 9 of 13) -18581 NM_001282731 9913 Hs.6232 NM_014860 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H SPT7-like STAGA complex gamma subunit protein-coding 10014 chr15 44784709 44784847 + 0 NA Intergenic LTR13|LTR|ERVK 48416 NM_001301145 140691 Hs.745248 NM_080745 ENSG00000185880 TRIM69 HSD-34|HSD34|RNF36|Trif tripartite motif containing 69 protein-coding 25923 chr7 27245915 27246019 + 0 NA exon (NM_001304519, exon 3 of 3) exon (NM_001304519, exon 3 of 3) 1262 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 24963 chr6 105601618 105601739 + 0 NA Intergenic Intergenic -198554 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 953 chr1 58903795 58903921 + 0 NA Intergenic CpG -116618 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 5515 chr11 66371681 66371833 + 0 NA promoter-TSS (NR_125343) promoter-TSS (NR_125343) 63 NM_001532 3177 Hs.569017 NM_001532 ENSG00000174669 SLC29A2 DER12|ENT2|HNP36 solute carrier family 29 member 2 protein-coding 23538 chr5 151257890 151257920 + 0 NA intron (NM_000405, intron 1 of 3) L2b|LINE|L2 4853 NM_000405 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 8362 chr13 75482489 75482514 + 0 NA promoter-TSS (NM_001286658) promoter-TSS (NM_001286658) -333 NM_001286659 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 25593 chr7 5240337 5240435 + 0 NA Intergenic Intergenic 26117 NM_001033520 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 22860 chr5 90096783 90096887 + 0 NA Intergenic Intergenic -80115 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 1560 chr1 115323625 115323688 + 0 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 14580 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 17600 chr20 10954573 10954611 + 0 NA Intergenic Intergenic -45320 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 5553 chr11 67317836 67317940 + 0 NA promoter-TSS (NR_024469) promoter-TSS (NR_024469) 49 NR_024469 100130987 Hs.664585 NR_024469 LOC100130987 - uncharacterized LOC100130987 ncRNA 25207 chr6 137873458 137873560 + 0 NA intron (NM_001270507, intron 2 of 8) intron (NM_001270507, intron 2 of 8) -5276 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 LOC100130476 - uncharacterized LOC100130476 ncRNA 24813 chr6 79076998 79077102 + 0 NA intron (NM_017934, intron 4 of 39) (CGAG)n|Simple_repeat|Simple_repeat 1248 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 260 chr1 17443707 17443770 + 0 NA Intergenic Intergenic -3984 NM_018715 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 5172 chr11 36289366 36289509 + 0 NA promoter-TSS (NM_001101653) promoter-TSS (NM_001101653) 12 NM_001101653 29099 Hs.279836 NM_014186 ENSG00000110442 COMMD9 HSPC166 COMM domain containing 9 protein-coding 22517 chr5 53031881 53031964 + 0 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 42596 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 2061 chr1 170168491 170168516 + 0 NA TTS (NM_001136107) TTS (NM_001136107) -17041 NR_036064 100422839 NR_036064 ENSG00000283340 MIR3119-1 - microRNA 3119-1 ncRNA 14944 chr2 7288562 7288720 + 0 NA Intergenic Intergenic -132620 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 28529 chr8 120952710 120952814 + 0 NA Intergenic Intergenic -140693 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 11560 chr16 69404515 69404725 + 0 NA Intergenic Intergenic -18632 NM_005652 7014 Hs.63335 NM_005652 ENSG00000132604 TERF2 TRBF2|TRF2 telomeric repeat binding factor 2 protein-coding 12279 chr17 28951650 28951782 + 0 NA promoter-TSS (NM_001033561) promoter-TSS (NM_001033561) -226 NM_001290131 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 9609 chr14 95255675 95255779 + 0 NA intron (NM_024734, intron 1 of 12) Tigger9b|DNA|TcMar-Tigger 64181 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 1723 chr1 151839763 151839867 + 0 NA intron (NM_001136003, intron 1 of 1) CpG 742 NM_001136003 100191040 Hs.694717 NM_001136003 ENSG00000225556 C2CD4D FAM148D C2 calcium dependent domain containing 4D protein-coding 12407 chr17 37570653 37570757 + 0 NA exon (NM_001163544, exon 9 of 21) exon (NM_001163544, exon 9 of 21) 38733 NM_198882 11276 Hs.594647 NM_007247 ENSG00000275066 SYNRG AP1GBP1|SYNG synergin gamma protein-coding 11020 chr16 11612359 11612463 + 0 NA Intergenic Intergenic -24945 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 10654 chr15 89067402 89067541 + 0 NA Intergenic LTR14B|LTR|ERVK -20679 NM_007011 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 24642 chr6 47161268 47161418 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -118980 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 29655 chr9 97922450 97922502 + 0 NA promoter-TSS (NM_016481) promoter-TSS (NM_016481) 94 NM_001330725 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 14003 chr19 6460218 6460321 + 0 NA promoter-TSS (NM_024103) promoter-TSS (NM_024103) -499 NM_024103 79085 Hs.356231 NM_024103 ENSG00000125648 SLC25A23 APC2|MCSC2|SCaMC-3 solute carrier family 25 member 23 protein-coding 5787 chr11 86152122 86152183 + 0 NA Intergenic Intergenic -82271 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 27003 chr7 130070428 130070574 + 0 NA promoter-TSS (NM_014997) promoter-TSS (NM_014997) -8 NM_014997 23008 Hs.520710 NM_014997 ENSG00000128607 KLHDC10 slim kelch domain containing 10 protein-coding 28576 chr8 124200175 124200309 + 0 NA intron (NR_125420, intron 2 of 2) intron (NR_125420, intron 2 of 2) -28720 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 27749 chr8 42338448 42338559 + 0 NA promoter-TSS (NM_002690) promoter-TSS (NM_002690) 48 NM_002690 5423 Hs.654484 NM_002690 ENSG00000070501 POLB - DNA polymerase beta protein-coding 13798 chr18 76709862 76709966 + 0 NA Intergenic Intergenic 19885 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 23790 chr5 177403794 177403904 + 0 NA intron (NM_000505, intron 10 of 13) CpG-22863 -3213 NM_001029886 345456 Hs.130196 NM_001029886 ENSG00000196570 PFN3 - profilin 3 protein-coding 18174 chr20 50103805 50103953 + 0 NA intron (NM_001282579, intron 1 of 4) L2a|LINE|L2 9319 NM_001257399 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 23034 chr5 113203250 113203354 + 0 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 91613 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 mutated in colorectal cancers protein-coding 26427 chr7 74635801 74635917 + 0 NA Intergenic Intergenic -21806 NM_032999 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 30500 chrX 13358071 13358175 + 0 NA Intergenic Intergenic 22882 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 27077 chr7 137954030 137954107 + 0 NA intron (NM_001243523, intron 1 of 3) intron (NM_001243523, intron 1 of 3) 720 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 23672 chr5 168269353 168269484 + 0 NA Intergenic Intergenic -22642 NM_001161661 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 2213 chr1 183471336 183471473 + 0 NA promoter-TSS (NM_173156) promoter-TSS (NM_173156) 578 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 3346 chr10 17059362 17059466 + 0 NA intron (NM_001081, intron 22 of 66) intron (NM_001081, intron 22 of 66) 70403 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 29438 chr9 86282482 86282582 + 0 NA promoter-TSS (NM_030940) promoter-TSS (NM_030940) 43 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|hIscA iron-sulfur cluster assembly 1 protein-coding 19770 chr3 101072456 101072549 + 0 NA Intergenic Intergenic -79012 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 16498 chr2 156455469 156455573 + 0 NA intron (NM_000408, intron 1 of 16) intron (NM_000408, intron 1 of 16) 19133 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 22821 chr5 83430569 83430673 + 0 NA Intergenic Intergenic -41053 NM_004385 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 3072 chr1 241519707 241519866 + 0 NA promoter-TSS (NM_000143) promoter-TSS (NM_000143) -1 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 23262 chr5 135034368 135034391 + 0 NA promoter-TSS (NM_002653) promoter-TSS (NM_002653) -105 NM_002653 5307 Hs.84136 NM_002653 ENSG00000069011 PITX1 BFT|CCF|LBNBG|POTX|PTX1 paired like homeodomain 1 protein-coding 11835 chr16 88706430 88706534 + 0 NA promoter-TSS (NM_178841) promoter-TSS (NM_178841) 19 NM_001318507 348180 Hs.592074 NM_001012759 ENSG00000174177 CTU2 C16orf84|NCS2|UPF0432 cytosolic thiouridylase subunit 2 protein-coding 6601 chr12 11171604 11171708 + 0 NA promoter-TSS (NM_001291314) promoter-TSS (NM_001291314) -31 NR_037918 100533464 Hs.732031 NR_037918 ENSG00000275778 PRH1-PRR4 PRH1 PRH1-PRR4 readthrough ncRNA 13231 chr18 3709292 3709450 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 105634 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 26440 chr7 75994745 75994751 + 0 NA promoter-TSS (NM_001317803) promoter-TSS (NM_001317803) -74 NM_031925 83862 Hs.488835 NM_031925 ENSG00000189077 TMEM120A NET29|TMPIT transmembrane protein 120A protein-coding 3213 chr10 4764026 4764070 + 0 NA Intergenic MER89|LTR|ERV1 -62129 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 7316 chr12 79547191 79547283 + 0 NA Intergenic Intergenic 127980 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 20117 chr3 129161058 129161199 + 0 NA 5' UTR (NM_001199469, exon 1 of 12) 5' UTR (NM_001199469, exon 1 of 12) 102 NM_001204890 100534599 Hs.512661 NM_001204890 ENSG00000261796 ISY1-RAB43 - ISY1-RAB43 readthrough protein-coding 28976 chr9 20684129 20684251 + 0 NA intron (NR_121601, intron 1 of 1) CpG 560 NR_121601 101929548 Hs.668302 NR_121601 ENSG00000227071 FOCAD-AS1 - FOCAD antisense RNA 1 ncRNA 18987 chr22 43127568 43127702 + 0 NA intron (NM_001197, intron 2 of 4) intron (NM_001197, intron 2 of 4) 15762 NM_173467 27349 Hs.349111 NM_014507 ENSG00000100294 MCAT FASN2C|MCT|MT|NET62|fabD malonyl-CoA-acyl carrier protein transacylase protein-coding 15143 chr2 20225003 20225107 + 0 NA 5' UTR (NM_002997, exon 1 of 5) 5' UTR (NM_002997, exon 1 of 5) 111 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 13964 chr19 4831658 4831802 + 0 NA promoter-TSS (NM_182919) promoter-TSS (NM_182919) 12 NM_182919 148022 Hs.29344 NM_014261 ENSG00000127666 TICAM1 IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF toll like receptor adaptor molecule 1 protein-coding 26331 chr7 64563116 64563280 + 0 NA promoter-TSS (NM_178558) promoter-TSS (NM_178558) -71 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 14885 chr1_KI270712v1_random 56541 56606 + 0 NA NA (TGGCTGGCT)n|Simple_repeat|Simple_repeat NA NA 25582 chr7 4641821 4641881 + 0 NA Intergenic CpG -40448 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1436 chr1 107077024 107077128 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 20431 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 13124 chr17 81329634 81329769 + 0 NA intron (NM_178520, intron 1 of 2) intron (NM_178520, intron 1 of 2) 973 NM_178520 284186 Hs.364191 NM_178520 ENSG00000185332 TMEM105 - transmembrane protein 105 protein-coding 16638 chr2 170739168 170739389 + 0 NA intron (NR_110185, intron 1 of 5) L2b|LINE|L2 23931 NM_001003845 389058 Hs.368802 NM_001003845 ENSG00000204335 SP5 - Sp5 transcription factor protein-coding 5506 chr11 66052132 66052282 + 0 NA promoter-TSS (NM_006842) promoter-TSS (NM_006842) -138 NM_006842 10992 Hs.406423 NM_006842 ENSG00000087365 SF3B2 Cus1|SAP145|SF3B145|SF3b1|SF3b150 splicing factor 3b subunit 2 protein-coding 6543 chr12 6924397 6924526 + 0 NA promoter-TSS (NM_001007026) promoter-TSS (NM_001007026) -2 NM_001007026 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 13479 chr18 44654655 44654792 + 0 NA Intergenic Intergenic -25450 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 16729 chr2 177784147 177784281 + 0 NA intron (NM_001077358, intron 8 of 18) MER41B|LTR|ERV1 104525 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 10929 chr16 3500836 3500988 + 0 NA promoter-TSS (NM_015041) promoter-TSS (NM_015041) -19 NM_001330454 23059 Hs.155995 NM_015041 ENSG00000103351 CLUAP1 CFAP22|FAP22|IFT38 clusterin associated protein 1 protein-coding 14461 chr19 40604018 40604154 + 0 NA intron (NM_001042545, intron 1 of 29) CpG 2715 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 20528 chr3 159458226 159458361 + 0 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 175647 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 15833 chr2 74498569 74498668 + 0 NA intron (NM_001009812, intron 1 of 1) CpG 940 NM_001282430 85474 Hs.516124 NM_001009812 ENSG00000179528 LBX2 LP3727 ladybird homeobox 2 protein-coding 14826 chr19 55670442 55670546 + 0 NA intron (NM_007279, intron 11 of 11) intron (NM_007279, intron 11 of 11) -4701 NM_001321263 29924 Hs.279953 NM_013333 ENSG00000063245 EPN1 - epsin 1 protein-coding 11437 chr16 58121949 58122079 + 0 NA intron (NM_013242, intron 1 of 5) intron (NM_013242, intron 1 of 5) 7378 NM_013242 29105 Hs.532755 NM_013242 ENSG00000070761 CFAP20 C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 20901 chr3 188947964 188948006 + 0 NA promoter-TSS (NR_046873) promoter-TSS (NR_046873) -346 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 919 chr1 55310772 55310806 + 0 NA Intergenic Intergenic 85148 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 30525 chrX 15854800 15854954 + 0 NA 5' UTR (NM_001272071, exon 1 of 6) 5' UTR (NM_001272071, exon 1 of 6) 137 NM_001272071 8905 Hs.121592 NM_003916 ENSG00000182287 AP1S2 DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B adaptor related protein complex 1 sigma 2 subunit protein-coding 15157 chr2 20579316 20579420 + 0 NA Intergenic Intergenic 13180 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 28527 chr8 120445423 120445527 + 0 NA promoter-TSS (NM_014078) promoter-TSS (NM_014078) -68 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 7984 chr13 24728140 24728244 + 0 NA Intergenic Intergenic -35971 NM_001184993 56163 Hs.97464 NM_031277 ENSG00000132972 RNF17 Mmip-2|SPATA23|TDRD4 ring finger protein 17 protein-coding 24443 chr6 35297701 35297796 + 0 NA promoter-TSS (NM_022047) promoter-TSS (NM_022047) -70 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6, guanine nucleotide exchange factor protein-coding 5963 chr11 102178392 102178551 + 0 NA intron (NM_001282097, intron 3 of 7) intron (NM_001282097, intron 3 of 7) 66031 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 1372 chr1 97138416 97138520 + 0 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 42545 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 19462 chr3 48088797 48088899 + 0 NA 5' UTR (NM_001134364, exon 1 of 18) 5' UTR (NM_001134364, exon 1 of 18) 431 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 9771 chr14_GL000225v1_random 82144 82282 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 26308 chr7 55133932 55133994 + 0 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 24146 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 18187 chr20 50483546 50483650 + 0 NA Intergenic LTR16C|LTR|ERVL -26723 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 27687 chr8 37736515 37736547 + 0 NA promoter-TSS (NM_001003790) promoter-TSS (NM_001003790) -48 NM_007175 11160 Hs.705490 NM_007175 ENSG00000147475 ERLIN2 C8orf2|Erlin-2|NET32|SPFH2|SPG18 ER lipid raft associated 2 protein-coding 5468 chr11 65261873 65261977 + 0 NA promoter-TSS (NM_002689) promoter-TSS (NM_002689) 73 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 21084 chr3 197730189 197730293 + 0 NA intron (NM_001145642, intron 1 of 20) MLT1K|LTR|ERVL-MaLR 6685 NM_001346873 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 RUN and cysteine rich domain containing beclin 1 interacting protein protein-coding 28939 chr9 14710989 14711140 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 11653 NM_005454 9350 Hs.248204 NM_005454 ENSG00000147869 CER1 DAND4 cerberus 1, DAN family BMP antagonist protein-coding 3309 chr10 13882243 13882347 + 0 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 90074 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 20710 chr3 177452603 177452720 + 0 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 10740 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 12820 chr17 62762053 62762157 + 0 NA intron (NM_001288780, intron 4 of 10) intron (NM_001288780, intron 4 of 10) 44548 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 12005 chr17 6506907 6507068 + 0 NA intron (NM_001165966, intron 2 of 18) MER45C|DNA|hAT-Tip100 49570 NM_001165966 83394 Hs.183983 NM_031220 ENSG00000091622 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 29158 chr9 70093966 70094110 + 0 NA intron (NR_125850, intron 2 of 13) intron (NR_125850, intron 2 of 13) 50457 NM_153267 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 15649 chr2 63698924 63699028 + 0 NA Intergenic Intergenic 109825 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 18124 chr20 47146785 47146795 + 0 NA intron (NM_005244, intron 10 of 15) intron (NM_005244, intron 10 of 15) -20177 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 20101 chr3 128095268 128095473 + 0 NA intron (NM_003707, intron 8 of 10) intron (NM_003707, intron 8 of 10) 19560 NR_046645 100874089 Hs.581603 NR_046645 ENSG00000239608 RUVBL1-AS1 - RUVBL1 antisense RNA 1 ncRNA 6336 chr11 129316076 129316106 + 0 NA Intergenic Intergenic -59895 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 27868 chr8 55906830 55906949 + 0 NA intron (NM_002350, intron 1 of 12) intron (NM_002350, intron 1 of 12) 27062 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 9394 chr14 75400479 75400600 + 0 NA Intergenic Intergenic -27267 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 24266 chr6 27873450 27873522 + 0 NA promoter-TSS (NM_003546) promoter-TSS (NM_003546) 25 NM_003546 8368 Hs.533295 NM_003546 ENSG00000275126 HIST1H4L H4.k|H4/k|H4FK histone cluster 1 H4 family member l protein-coding 26036 chr7 34852507 34852611 + 0 NA intron (NM_207173, intron 8 of 8) intron (NM_207173, intron 8 of 8) -18228 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 23443 chr5 146703964 146704096 + 0 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 174755 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 25116 chr6 125950397 125950501 + 0 NA Intergenic MER67B|LTR|ERV1 -6266 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 13705 chr18 63422475 63422628 + 0 NA promoter-TSS (NM_004869) promoter-TSS (NM_004869) -32 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 16899 chr2 200259741 200259919 + 0 NA Intergenic Intergenic -46051 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 28507 chr8 119135446 119135550 + 0 NA Intergenic Intergenic -66716 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 1803 chr1 155051112 155051203 + 0 NA promoter-TSS (NR_048578) promoter-TSS (NR_048578) 8 NR_040772 100505666 Hs.657533 NR_040772 DCST1-AS1 - DCST1 antisense RNA 1 ncRNA 9128 chr14 60515112 60515160 + 0 NA Intergenic CpG 5916 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 28417 chr8 109042285 109042389 + 0 NA Intergenic Intergenic -45087 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 14616 chr19 47274091 47274244 + 0 NA promoter-TSS (NR_037675) promoter-TSS (NR_037675) -235 NR_037675 255783 Hs.128690 NM_178511 ENSG00000257704 INAFM1 PRR24 InaF motif containing 1 protein-coding 1201 chr1 85147172 85147276 + 0 NA Intergenic L1MD|LINE|L1 13430 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 16132 chr2 111667596 111667728 + 0 NA Intergenic Intergenic 103472 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 22596 chr5 59799575 59799679 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -31015 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 17148 chr2 221572351 221572447 + 0 NA promoter-TSS (NM_001304537) promoter-TSS (NM_001304537) -41 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 14213 chr19 16185312 16185465 + 0 NA promoter-TSS (NM_014077) promoter-TSS (NM_014077) -13 NM_014077 26017 Hs.631614 NM_014077 ENSG00000105058 FAM32A OTAG-12|OTAG12 family with sequence similarity 32 member A protein-coding 16177 chr2 113604226 113604365 + 0 NA promoter-TSS (NR_024004) promoter-TSS (NR_024004) -578 NR_024004 84771 Hs.712940 NR_024004 DDX11L2 - DEAD/H-box helicase 11 like 2 pseudo 22535 chr5 54701239 54701462 + 0 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) 1974 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 5492 chr11 65712599 65712746 + 0 NA intron (NM_001206833, intron 1 of 11) intron (NM_001206833, intron 1 of 11) 670 NM_182710 10524 Hs.397010 NM_006388 ENSG00000172977 KAT5 ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2 lysine acetyltransferase 5 protein-coding 3300 chr10 13347882 13347968 + 0 NA intron (NM_012247, intron 1 of 8) CpG 373 NM_001195602 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 5069 chr11 29173772 29173876 + 0 NA Intergenic Intergenic -696276 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 17 chr1 1375317 1375447 + 0 NA promoter-TSS (NM_001127229) promoter-TSS (NM_001127229) 56 NM_017900 54998 Hs.632515 NM_017900 ENSG00000175756 AURKAIP1 AIP|AKIP|MRP-S38 aurora kinase A interacting protein 1 protein-coding 23162 chr5 128201394 128201499 + 0 NA Intergenic Intergenic 117655 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 15299 chr2 30711832 30711936 + 0 NA Intergenic LTR41C|LTR|ERVL 95561 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 16900 chr2 200278923 200279027 + 0 NA Intergenic Intergenic -26906 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 20219 chr3 136250534 136250688 + 0 NA intron (NM_000532, intron 1 of 14) CpG 286 NM_001178014 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase beta subunit protein-coding 7762 chr12 120686845 120686942 + 0 NA promoter-TSS (NM_001303628) promoter-TSS (NM_001303628) -231 NM_014730 9761 Hs.744910 NM_014730 ENSG00000110917 MLEC KIAA0152 malectin protein-coding 21252 chr4 24584597 24584731 + 0 NA promoter-TSS (NM_001358) promoter-TSS (NM_001358) -103 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 23552 chr5 151758599 151758703 + 0 NA promoter-TSS (NM_004045) promoter-TSS (NM_004045) -2 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 18280 chr20 55538411 55538515 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -111266 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 25749 chr7 16990116 16990166 + 0 NA Intergenic Intergenic -108152 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 20073 chr3 125603372 125603476 + 0 NA Intergenic Intergenic -7887 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 27320 chr8 2127752 2127856 + 0 NA intron (NM_003970, intron 31 of 36) CpG 51215 NR_106983 102465695 NR_106983 ENSG00000273593 MIR7160 hsa-mir-7160 microRNA 7160 ncRNA 21455 chr4 74794595 74794699 + 0 NA promoter-TSS (NM_001316963) promoter-TSS (NM_001316963) 39 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 14079 chr19 10535746 10535896 + 0 NA Intergenic Intergenic -8073 NR_104025 84971 Hs.512799 NM_032885 ENSG00000130734 ATG4D APG4-D|APG4D|AUTL4 autophagy related 4D cysteine peptidase protein-coding 2356 chr1 200894812 200894929 + 0 NA promoter-TSS (NM_001142569) promoter-TSS (NM_001142569) 49 NM_001142569 55765 Hs.518997 NM_018265 ENSG00000163362 C1orf106 - chromosome 1 open reading frame 106 protein-coding 30049 chr9 121963628 121963658 + 0 NA intron (NM_001139442, intron 6 of 8) intron (NM_001139442, intron 6 of 8) 129963 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 4721 chr11 4393711 4393827 + 0 NA promoter-TSS (NM_003141) promoter-TSS (NM_003141) -73 NM_003141 6737 Hs.532357 NM_003141 ENSG00000132109 TRIM21 RNF81|RO52|Ro/SSA|SSA|SSA1 tripartite motif containing 21 protein-coding 21767 chr4 122922966 122923070 + 0 NA promoter-TSS (NM_001317799) promoter-TSS (NM_001317799) -14 NM_198041 11162 Hs.558459 NM_007083 ENSG00000170917 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix hydrolase 6 protein-coding 17377 chr2 239401225 239401354 + 0 NA promoter-TSS (NR_135575) promoter-TSS (NR_135575) -147 NR_135575 101928111 Hs.534680 NR_135575 ENSG00000222020 LOC101928111 - uncharacterized LOC101928111 ncRNA 18004 chr20 40416403 40416507 + 0 NA Intergenic Intergenic 272785 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 7625 chr12 109093427 109093583 + 0 NA promoter-TSS (NM_001001655) promoter-TSS (NM_001001655) -17 NM_001145375 121642 Hs.374458 NM_001001655 ENSG00000189046 ALKBH2 ABH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase protein-coding 27971 chr8 66546885 66546992 + 0 NA Intergenic Intergenic 53682 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 C8orf46 - chromosome 8 open reading frame 46 protein-coding 6548 chr12 6963122 6963277 + 0 NA promoter-TSS (NR_135032) promoter-TSS (NR_135032) -46 NR_135032 105369635 Hs.744442 NR_135032 ENSG00000257084 LOC105369635 - uncharacterized LOC105369635 ncRNA 3700 chr10 55311935 55312071 + 0 NA Intergenic Intergenic -286987 NM_001190478 100463289 Hs.727204 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2-like 5 protein-coding 20540 chr3 159814282 159814505 + 0 NA intron (NM_001197113, intron 5 of 10) LTR16|LTR|ERVL -25468 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 18058 chr20 44187553 44187706 + 0 NA promoter-TSS (NM_020433) promoter-TSS (NM_020433) -51 NM_020433 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 13768 chr18 73564246 73564350 + 0 NA Intergenic Intergenic 239357 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LOC100505817 - uncharacterized LOC100505817 ncRNA 19009 chr22 45639112 45639201 + 0 NA Intergenic Intergenic -32642 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 10198 chr15 59298313 59298465 + 0 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 74483 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 10970 chr16 4957861 4958012 + 0 NA promoter-TSS (NM_014692) promoter-TSS (NM_014692) -381 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 26900 chr7 119545242 119545349 + 0 NA Intergenic L4_B_Mam|LINE|RTE-X 362080 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LVCAT5 - liver cancer-associated transcript 5 ncRNA 14510 chr19 43675555 43675670 + 0 NA Intergenic Intergenic -5266 NM_001301037 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 6298 chr11 126268912 126268980 + 0 NA promoter-TSS (NM_001177842) promoter-TSS (NM_001177842) 36 NM_003139 6734 Hs.368376 NM_003139 ENSG00000182934 SRPRA DP|SRPR|Sralpha SRP receptor alpha subunit protein-coding 29616 chr9 95510949 95511111 + 0 NA intron (NM_001083603, intron 1 of 23) CpG-28534 -2481 NM_000264 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11 patched 1 protein-coding 24358 chr6 31272093 31272221 + 0 NA promoter-TSS (NM_002117) promoter-TSS (NM_002117) -21 NM_001243042 3107 Hs.656020 NM_002117 ENSG00000204525 HLA-C D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1 major histocompatibility complex, class I, C protein-coding 19360 chr3 38155003 38155051 + 0 NA Intergenic Intergenic -10508 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive 1 protein-coding 1220 chr1 85607318 85607432 + 0 NA Intergenic Intergenic 26614 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CYR61 CCN1|GIG1|IGFBP10 cysteine rich angiogenic inducer 61 protein-coding 7493 chr12 98418786 98418972 + 0 NA Intergenic Intergenic 38266 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 14134 chr19 12294898 12295067 + 0 NA promoter-TSS (NM_001164276) promoter-TSS (NM_001164276) -83 NM_016264 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 18641 chr22 20079888 20079992 + 0 NA promoter-TSS (NM_001190326) promoter-TSS (NM_001190326) -292 NM_022720 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8, microprocessor complex subunit protein-coding 9397 chr14 75554654 75554758 + 0 NA Intergenic MER21A|LTR|ERVL -23891 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 21130 chr4 3437039 3437235 + 0 NA intron (NM_198227, intron 15 of 15) intron (NM_198227, intron 15 of 15) -4796 NM_001297439 3083 Hs.104 NM_001528 ENSG00000109758 HGFAC HGFA HGF activator protein-coding 20562 chr3 161285203 161285351 + 0 NA Intergenic Intergenic 63987 NM_001320227 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 20269 chr3 139653739 139653843 + 0 NA intron (NM_001200047, intron 1 of 3) intron (NM_001200047, intron 1 of 3) 24259 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 12254 chr17 28335551 28335726 + 0 NA promoter-TSS (NM_001267774) promoter-TSS (NM_001267774) 116 NM_021137 7126 Hs.76090 NM_021137 ENSG00000109079 TNFAIP1 B12|B61|BTBD34|EDP1|hBACURD2 TNF alpha induced protein 1 protein-coding 7031 chr12 52281034 52281166 + 0 NA intron (NM_001320198, intron 2 of 10) intron (NM_001320198, intron 2 of 10) 6455 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 19977 chr3 119176601 119176699 + 0 NA intron (NM_006952, intron 1 of 7) intron (NM_006952, intron 1 of 7) 3072 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 25384 chr6 155314498 155314630 + 0 NA promoter-TSS (NM_016020) promoter-TSS (NM_016020) -81 NM_016020 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 2652 chr1 213443511 213443677 + 0 NA Intergenic Intergenic 392361 NM_001287219 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 23873 chr6 1686146 1686250 + 0 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 75752 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 28653 chr8 128076927 128077031 + 0 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 27827 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 4263 chr10 102674208 102674312 + 0 NA 3' UTR (NM_004311, exon 6 of 6) 3' UTR (NM_004311, exon 6 of 6) 29765 NM_030912 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 28966 chr9 19769326 19769430 + 0 NA intron (NM_001193288, intron 1 of 8) L2|LINE|L2 17641 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 5014 chr11 23903221 23903380 + 0 NA Intergenic Intergenic -484110 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 24769 chr6 70566810 70566976 + 0 NA promoter-TSS (NM_145267) promoter-TSS (NM_145267) -29 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 1288 chr1 90558255 90558359 + 0 NA Intergenic Intergenic 158930 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 810 chr1 46132580 46132685 + 0 NA promoter-TSS (NM_001328650) promoter-TSS (NM_001328650) 76 NM_001328653 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 16062 chr2 105235528 105235632 + 0 NA Intergenic Intergenic -6163 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 11414 chr16 57091535 57091665 + 0 NA promoter-TSS (NM_152727) promoter-TSS (NM_152727) -943 NM_152727 221184 Hs.339809 NM_152727 ENSG00000140848 CPNE2 COPN2|CPN2 copine 2 protein-coding 5425 chr11 64166498 64166644 + 0 NA promoter-TSS (NM_014067) promoter-TSS (NM_014067) -458 NM_014067 28992 Hs.602898 NM_014067 ENSG00000133315 MACROD1 LRP16 MACRO domain containing 1 protein-coding 19731 chr3 98522857 98522961 + 0 NA 5' UTR (NM_019895, exon 1 of 6) 5' UTR (NM_019895, exon 1 of 6) 157 NM_001040199 56650 Hs.531371 NM_019895 ENSG00000080822 CLDND1 C3orf4|GENX-3745 claudin domain containing 1 protein-coding 9092 chr14 58152223 58152327 + 0 NA promoter-TSS (NM_001320173) promoter-TSS (NM_001320173) -36 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 C14orf37 UT2|c14_5376 chromosome 14 open reading frame 37 protein-coding 1587 chr1 117121715 117121875 + 0 NA promoter-TSS (NM_001145635) promoter-TSS (NM_001145635) -6 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 5838 chr11 92269162 92269266 + 0 NA Intergenic Intergenic -82882 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 29778 chr9 107389665 107389682 + 0 NA Intergenic Intergenic 76912 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 23520 chr5 150511950 150512054 + 0 NA intron (NM_001543, intron 1 of 14) intron (NM_001543, intron 1 of 14) 3890 NM_001543 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 30229 chr9 129383659 129383813 + 0 NA Intergenic CpG 46813 NR_120686 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 18769 chr22 29842952 29842976 + 0 NA Intergenic Intergenic -4660 NM_032204 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 24624 chr6 45613808 45613912 + 0 NA Intergenic Intergenic 191283 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 22505 chr5 52727795 52727899 + 0 NA Intergenic Intergenic -60093 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 20870 chr3 186640565 186640729 + 0 NA exon (NM_001308077, exon 1 of 6) exon (NM_001308077, exon 1 of 6) 287 NM_014375 26998 Hs.81073 NM_014375 ENSG00000090512 FETUB 16G2|Gugu|IRL685 fetuin B protein-coding 227 chr1 16181937 16182067 + 0 NA Intergenic Intergenic -25893 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 6462 chr12 3454319 3454473 + 0 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -36802 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 7658 chr12 110934611 110934805 + 0 NA Intergenic Intergenic -1894 NR_036513 100131138 Hs.152129 NR_036513 ENSG00000185847 LINC01405 - long intergenic non-protein coding RNA 1405 ncRNA 29034 chr9 33167236 33167344 + 0 NA promoter-TSS (NM_001497) promoter-TSS (NM_001497) 68 NM_001497 2683 Hs.272011 NM_001497 ENSG00000086062 B4GALT1 B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 beta-1,4-galactosyltransferase 1 protein-coding 27232 chr7 151368256 151368347 + 0 NA intron (NM_001243351, intron 10 of 14) MLT1J1|LTR|ERVL-MaLR 26540 NM_001243351 51667 Hs.647082 NM_016118 ENSG00000013374 NUB1 BS4|NUB1L|NYREN18 negative regulator of ubiquitin like proteins 1 protein-coding 4829 chr11 11584520 11584675 + 0 NA intron (NM_198516, intron 1 of 10) intron (NM_198516, intron 1 of 10) 37417 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 8270 chr13 49936327 49936516 + 0 NA promoter-TSS (NR_023351) promoter-TSS (NR_023351) 80 NM_020456 57213 Hs.44235 NM_020456 ENSG00000123178 SPRYD7 C13orf1|CLLD6 SPRY domain containing 7 protein-coding 8737 chr14 23556183 23556284 + 0 NA non-coding (NR_023314, exon 1 of 2) non-coding (NR_023314, exon 1 of 2) 251 NR_023314 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 25480 chr6 166999162 166999313 + 0 NA promoter-TSS (NM_194429) promoter-TSS (NM_194429) -80 NM_001278690 11116 Hs.487175 NM_007045 ENSG00000213066 FGFR1OP FOP FGFR1 oncogene partner protein-coding 24043 chr6 11770892 11771044 + 0 NA intron (NM_001143948, intron 1 of 6) intron (NM_001143948, intron 1 of 6) 8079 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 12571 chr17 45051563 45051684 + 0 NA promoter-TSS (NM_001288655) promoter-TSS (NM_001288655) 38 NM_001128631 79877 Hs.463148 NM_024819 ENSG00000172992 DCAKD - dephospho-CoA kinase domain containing protein-coding 23046 chr5 115169892 115170108 + 0 NA promoter-TSS (NM_001300759) promoter-TSS (NM_001300759) -37 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 11959 chr17 4420806 4420846 + 0 NA Intergenic Intergenic -13098 NM_001320449 201305 Hs.657543 NM_182538 ENSG00000182557 SPNS3 - sphingolipid transporter 3 (putative) protein-coding 17428 chr20 653316 653449 + 0 NA promoter-TSS (NM_080725) promoter-TSS (NM_080725) -12 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 26785 chr7 106285021 106285125 + 0 NA 5' UTR (NM_005746, exon 1 of 11) 5' UTR (NM_005746, exon 1 of 11) 119 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 19029 chr22 46542397 46542501 + 0 NA Intergenic Intergenic -5279 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 6099 chr11 113190375 113190430 + 0 NA intron (NM_001076682, intron 1 of 18) intron (NM_001076682, intron 1 of 18) 83499 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 25562 chr7 2844408 2844492 + 0 NA promoter-TSS (NM_001293092) promoter-TSS (NM_001293092) -125 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 9441 chr14 77966245 77966349 + 0 NA Intergenic CpG 166214 NM_020421 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 28520 chr8 119867235 119867315 + 0 NA Intergenic Intergenic -6380 NM_001283012 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 1817 chr1 155308598 155308760 + 0 NA promoter-TSS (NM_001135822) promoter-TSS (NM_001135822) -69 NM_001242824 2224 Hs.335918 NM_002004 ENSG00000160752 FDPS FPPS|FPS|POROK9 farnesyl diphosphate synthase protein-coding 12837 chr17 63773712 63773834 + 0 NA promoter-TSS (NM_020198) promoter-TSS (NM_020198) -45 NM_020198 57003 Hs.202011 NM_020198 ENSG00000108588 CCDC47 GK001|MSTP041 coiled-coil domain containing 47 protein-coding 24685 chr6 52284975 52285079 + 0 NA promoter-TSS (NM_001270472) promoter-TSS (NM_001270472) -146 NM_001270472 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 6795 chr12 27970172 27970205 + 0 NA promoter-TSS (NM_198964) promoter-TSS (NM_198964) -227 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 22698 chr5 71922702 71922806 + 0 NA Intergenic Intergenic -184514 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 17111 chr2 218909081 218909162 + 0 NA intron (NR_110238, intron 3 of 4) CpG 21516 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 2707 chr1 218397785 218397934 + 0 NA intron (NM_001135599, intron 2 of 7) L3|LINE|CR1 -39774 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 20258 chr3 139317866 139317970 + 0 NA Intergenic Intergenic -26101 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 28067 chr8 79793754 79793858 + 0 NA intron (NR_125410, intron 3 of 3) Tigger7|DNA|TcMar-Tigger 25664 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 3998 chr10 81108625 81108753 + 0 NA Intergenic Intergenic 567870 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 31172 chrX 153724591 153724695 + 0 NA promoter-TSS (NM_001139441) promoter-TSS (NM_001139441) 103 NM_001256447 10134 Hs.522817 NM_005745 ENSG00000185825 BCAP31 6C6-AG|BAP31|CDM|DDCH|DXS1357E B-cell receptor-associated protein 31 protein-coding 21611 chr4 98995313 98995474 + 0 NA promoter-TSS (NM_015143) promoter-TSS (NM_015143) -244 NM_015143 23173 Hs.480364 NM_015143 ENSG00000164024 METAP1 MAP1A|MetAP1A methionyl aminopeptidase 1 protein-coding 17332 chr2 236745915 236746034 + 0 NA Intergenic Intergenic 176237 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 21443 chr4 73740568 73740672 + 0 NA 5' UTR (NM_000584, exon 1 of 4) 5' UTR (NM_000584, exon 1 of 4) 114 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 12236 chr17 27241799 27241827 + 0 NA Intergenic Intergenic 52183 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 11933 chr17 2960346 2960542 + 0 NA intron (NM_001100398, intron 4 of 23) intron (NM_001100398, intron 4 of 23) 5451 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 1511 chr1 111593115 111593268 + 0 NA Intergenic Intergenic 15127 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 27561 chr8 25000664 25000863 + 0 NA Intergenic CpG -43894 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 30584 chrX 25015885 25016044 + 0 NA promoter-TSS (NM_139058) promoter-TSS (NM_139058) -16 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 6317 chr11 128171681 128171840 + 0 NA Intergenic Intergenic 350550 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 5538 chr11 66958399 66958620 + 0 NA promoter-TSS (NM_000920) promoter-TSS (NM_000920) -133 NM_000920 5091 Hs.89890 NM_000920 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 13070 chr17 78251339 78251443 + 0 NA Intergenic Intergenic 20081 NM_001204212 283999 Hs.632228 NM_001145529 ENSG00000204278 TMEM235 ARGM1 transmembrane protein 235 protein-coding 22425 chr5 40410653 40410653 + 0 NA Intergenic Intergenic -269277 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 18800 chr22 31243486 31243590 + 0 NA intron (NM_005569, intron 2 of 15) intron (NM_005569, intron 2 of 15) -4824 NM_001031801 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 16829 chr2 190648824 190648841 + 0 NA promoter-TSS (NM_005966) promoter-TSS (NM_005966) -63 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 6488 chr12 5789429 5789533 + 0 NA intron (NM_001278596, intron 10 of 25) intron (NM_001278596, intron 10 of 25) 155778 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 12314 chr17 31487749 31487868 + 0 NA promoter-TSS (NM_001303542) promoter-TSS (NM_001303542) -193 NM_001346749 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 26518 chr7 84412360 84412509 + 0 NA Intergenic Intergenic -120042 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 663 chr1 38138785 38138848 + 0 NA Intergenic Intergenic 49585 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 23280 chr5 136123445 136123554 + 0 NA Intergenic Intergenic -9346 NM_001001419 4090 Hs.167700 NM_005903 ENSG00000113658 SMAD5 DWFC|JV5-1|MADH5 SMAD family member 5 protein-coding 21192 chr4 13944217 13944394 + 0 NA Intergenic LTR1A2|LTR|ERV1 -167663 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 14723 chr19 50511214 50511444 + 0 NA promoter-TSS (NM_001270686) promoter-TSS (NM_001270686) 26 NM_001270640 126119 Hs.467151 NM_138334 ENSG00000161677 JOSD2 SBBI54 Josephin domain containing 2 protein-coding 5050 chr11 27506797 27506901 + 0 NA promoter-TSS (NR_002832) promoter-TSS (NR_002832) -3 NR_033312 497258 Hs.675323 NR_002832 ENSG00000245573 BDNF-AS ANTI-BDNF|BDNF|BDNF-AS1|BDNFOS|NCRNA00049 BDNF antisense RNA ncRNA 25501 chr6 170026517 170026670 + 0 NA Intergenic Intergenic 63970 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 11745 chr16 82628206 82628339 + 0 NA intron (NM_001257, intron 1 of 13) G-rich|Low_complexity|Low_complexity 1478 NM_001257 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 10922 chr16 3264568 3264674 + 0 NA non-coding (NR_033904, exon 1 of 2) non-coding (NR_033904, exon 1 of 2) 853 NR_033904 283876 Hs.592092 NR_033904 ENSG00000281005 LINC00921 - long intergenic non-protein coding RNA 921 ncRNA 4326 chr10 109852506 109852650 + 0 NA Intergenic Intergenic 70668 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 24015 chr6 10355500 10355587 + 0 NA Intergenic Intergenic -56775 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 1946 chr1 162136846 162136977 + 0 NA intron (NM_014697, intron 1 of 9) intron (NM_014697, intron 1 of 9) -20196 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 29304 chr9 77449816 77449920 + 0 NA intron (NR_121184, intron 1 of 4) intron (NR_121184, intron 1 of 4) 2219 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 24188 chr6 23175205 23175309 + 0 NA Intergenic Intergenic -457333 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 27690 chr8 37849870 37850051 + 0 NA promoter-TSS (NM_018310) promoter-TSS (NM_018310) -47 NM_018310 55290 Hs.709301 NM_018310 ENSG00000104221 BRF2 BRFU|TFIIIB50 BRF2, RNA polymerase III transcription initiation factor subunit protein-coding 12015 chr17 6831680 6831810 + 0 NA promoter-TSS (NM_053285) promoter-TSS (NM_053285) -4 NM_053285 83659 Hs.462108 NM_053285 ENSG00000167858 TEKT1 - tektin 1 protein-coding 11950 chr17 4263908 4264067 + 0 NA promoter-TSS (NM_016376) promoter-TSS (NM_016376) 8 NR_047571 51479 Hs.696087 NM_016376 ENSG00000185722 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 30189 chr9 128552357 128552476 + 0 NA promoter-TSS (NM_001130438) promoter-TSS (NM_001130438) -142 NM_001130438 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 27070 chr7 135977376 135977509 + 0 NA promoter-TSS (NM_001128619) promoter-TSS (NM_001128619) 14 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 20858 chr3 185959843 185959947 + 0 NA promoter-TSS (NR_033752) promoter-TSS (NR_033752) -74 NR_033752 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 13997 chr19 6199715 6199819 + 0 NA Intergenic CpG 64134 NM_001289177 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 23641 chr5 160165686 160165819 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -21615 NM_001130958 2172 Hs.519719 NM_001445 ENSG00000170231 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6 protein-coding 29499 chr9 89593139 89593243 + 0 NA Intergenic Intergenic -11821 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 19992 chr3 120094957 120095110 + 0 NA promoter-TSS (NM_001146156) promoter-TSS (NM_001146156) -616 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 14072 chr19 10334833 10335001 + 0 NA intron (NM_001320605, intron 3 of 5) CpG -1279 NM_133452 125950 Hs.744952 NM_133452 ENSG00000161847 RAVER1 - ribonucleoprotein, PTB binding 1 protein-coding 3465 chr10 26524761 26524865 + 0 NA intron (NM_019043, intron 8 of 14) MER4D|LTR|ERV1 54494 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 25014 chr6 110944755 110944859 + 0 NA Intergenic Intergenic -13753 NM_138408 112495 Hs.418520 NM_138408 ENSG00000155115 GTF3C6 C6orf51|TFIIIC35|bA397G5.3 general transcription factor IIIC subunit 6 protein-coding 3629 chr10 44864956 44865112 + 0 NA intron (NR_033842, intron 2 of 7) CpG -46282 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 29643 chr9 97089570 97089697 + 0 NA Intergenic Intergenic -7688 NR_002942 340508 Hs.680438 NR_002942 ENSG00000228376 GAS2L1P2 - growth arrest specific 2 like 1 pseudogene 2 pseudo 25727 chr7 15555688 15555792 + 0 NA intron (NM_001004320, intron 2 of 12) intron (NM_001004320, intron 2 of 12) 6275 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 9518 chr14 88831427 88831531 + 0 NA intron (NM_198310, intron 2 of 13) MER66C|LTR|ERV1 7326 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 16624 chr2 169069478 169069560 + 0 NA 5' UTR (NM_199204, exon 2 of 6) 5' UTR (NM_199204, exon 2 of 6) 2484 NM_199204 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 15435 chr2 43131083 43131204 + 0 NA Intergenic Intergenic -91600 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 14927 chr2 3575163 3575267 + 0 NA promoter-TSS (NM_001011) promoter-TSS (NM_001011) -48 NM_001011 6201 Hs.534346 NM_001011 ENSG00000171863 RPS7 DBA8|S7 ribosomal protein S7 protein-coding 23950 chr6 6700039 6700196 + 0 NA Intergenic Intergenic -77291 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 26437 chr7 75915056 75915056 + 0 NA promoter-TSS (NM_000941) promoter-TSS (NM_000941) -46 NM_000941 5447 Hs.354056 NM_000941 ENSG00000127948 POR CPR|CYPOR|P450R cytochrome p450 oxidoreductase protein-coding 2644 chr1 212667580 212667679 + 0 NA Intergenic Intergenic 32356 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 6678 chr12 14961685 14961817 + 0 NA promoter-TSS (NM_001175) promoter-TSS (NM_001175) 19 NM_001175 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 29595 chr9 94917066 94917170 + 0 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 107156 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 6063 chr11 111303664 111303796 + 0 NA intron (NM_001136105, intron 2 of 4) intron (NM_001136105, intron 2 of 4) 1318 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 12889 chr17 67638040 67638179 + 0 NA intron (NM_181671, intron 6 of 9) intron (NM_181671, intron 6 of 9) -79724 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 5811 chr11 87000279 87000383 + 0 NA non-coding (NR_038905, exon 3 of 3) non-coding (NR_038905, exon 3 of 3) -37513 NM_022918 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 19274 chr3 25782940 25783035 + 0 NA intron (NM_001145294, intron 1 of 11) CpG 511 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 19048 chr22 49970917 49971081 + 0 NA Intergenic CpG 8133 NR_106879 102465493 NR_106879 ENSG00000276753 MIR6821 hsa-mir-6821 microRNA 6821 ncRNA 16259 chr2 123720832 123720936 + 0 NA Intergenic Intergenic -304403 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 13454 chr18 36672485 36672635 + 0 NA intron (NM_025135, intron 11 of 24) MLT1H|LTR|ERVL-MaLR -9142 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 3155 chr1 247906666 247906698 + 0 NA Intergenic LTR37A|LTR|ERV1 11095 NM_001001957 343171 Hs.269151 NM_001001957 ENSG00000238243 OR2W3 OR2W3P|OR2W8P|OST718 olfactory receptor family 2 subfamily W member 3 protein-coding 27132 chr7 141976353 141976457 + 0 NA Intergenic Intergenic -2632 NM_176817 5726 Hs.647085 NM_176817 ENSG00000257138 TAS2R38 PTC|T2R38|T2R61 taste 2 receptor member 38 protein-coding 20525 chr3 159200289 159200393 + 0 NA intron (NM_001197100, intron 1 of 3) intron (NM_001197100, intron 1 of 3) -72906 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 30991 chrX 116239965 116240069 + 0 NA Intergenic Intergenic 69312 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 26392 chr7 73612854 73613001 + 0 NA intron (NR_134541, intron 2 of 15) L2c|LINE|L2 11613 NM_032953 51085 Hs.647055 NM_032951 ENSG00000009950 MLXIPL CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein like protein-coding 7327 chr12 80552005 80552104 + 0 NA intron (NM_001145026, intron 25 of 44) MER5A|DNA|hAT-Charlie 107708 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase, receptor type Q protein-coding 3280 chr10 11687402 11687547 + 0 NA Intergenic Intergenic -54883 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 29166 chr9 70419124 70419273 + 0 NA Intergenic CpG -4541 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 26819 chr7 111198406 111198563 + 0 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 107478 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 24465 chr6 36579889 36579917 + 0 NA Intergenic Intergenic -14410 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 10061 chr15 49675156 49675300 + 0 NA Intergenic Intergenic 54199 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 19639 chr3 67526328 67526432 + 0 NA intron (NM_001177599, intron 4 of 10) MER30|DNA|hAT-Charlie 128234 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 941 chr1 58618438 58618586 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -41018 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 19459 chr3 47513411 47513563 + 0 NA intron (NM_001031703, intron 1 of 6) CpG 222 NM_001031703 54859 Hs.311100 NM_017713 ENSG00000163832 ELP6 C3orf75|TMEM103 elongator acetyltransferase complex subunit 6 protein-coding 9098 chr14 58396287 58396411 + 0 NA intron (NM_207377, intron 2 of 4) CpG-7319 423 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 8915 chr14 39050531 39050635 + 0 NA intron (NM_006364, intron 14 of 19) intron (NM_006364, intron 14 of 19) 52945 NM_006364 10484 Hs.272927 NM_006364 ENSG00000100934 SEC23A CLSD Sec23 homolog A, coat complex II component protein-coding 27929 chr8 61714670 61714774 + 0 NA promoter-TSS (NR_039680) promoter-TSS (NR_039680) -66 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 24713 chr6 53652130 53652234 + 0 NA exon (NM_001003760, exon 3 of 3) exon (NM_001003760, exon 3 of 3) 13526 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 3436 chr10 24383398 24383502 + 0 NA intron (NM_001098500, intron 4 of 18) intron (NM_001098500, intron 4 of 18) -65983 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 13347 chr18 26226316 26226482 + 0 NA promoter-TSS (NM_001293725) promoter-TSS (NM_001293725) -484 NR_121653 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 17635 chr20 13061489 13061550 + 0 NA intron (NM_018327, intron 2 of 11) L2a|LINE|L2 52540 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 21417 chr4 68129937 68130089 + 0 NA promoter-TSS (NM_207407) promoter-TSS (NM_207407) -144 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane protease, serine 11F protein-coding 26895 chr7 118072891 118072995 + 0 NA Intergenic Intergenic -111089 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 31104 chrX 136611693 136611797 + 0 NA Intergenic MER44A|DNA|TcMar-Tigger -27798 NR_038462 100128420 Hs.152595 NR_038461 ENSG00000233093 LINC00892 - long intergenic non-protein coding RNA 892 ncRNA 20754 chr3 180679418 180679575 + 0 NA promoter-TSS (NM_181426) promoter-TSS (NM_181426) -1 NM_181426 339829 Hs.712820 NM_181426 ENSG00000145075 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 15381 chr2 38443007 38443111 + 0 NA Intergenic Intergenic -64475 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 29182 chr9 71514740 71514844 + 0 NA Intergenic Intergenic 254092 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 20205 chr3 134486121 134486229 + 0 NA promoter-TSS (NM_001242375) promoter-TSS (NM_001242375) -30 NM_025180 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 8549 chr13 105817159 105817244 + 0 NA Intergenic Intergenic 110371 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 3583 chr10 35642243 35642390 + 0 NA promoter-TSS (NM_031866) promoter-TSS (NM_031866) -882 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 7798 chr12 122266449 122266612 + 0 NA promoter-TSS (NM_022916) promoter-TSS (NM_022916) -9 NM_022916 65082 Hs.592009 NM_022916 ENSG00000139719 VPS33A - VPS33A, CORVET/HOPS core subunit protein-coding 102 chr1 7549383 7549513 + 0 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -221821 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 8673 chr14 20986999 20987098 + 0 NA Intergenic Intergenic -2758 NM_022734 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 17323 chr2 235703176 235703280 + 0 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) 197477 NR_131900 100506749 Hs.684184 NR_131900 ENSG00000235529 AGAP1-IT1 - AGAP1 intronic transcript 1 ncRNA 8454 chr13 95380767 95380871 + 0 NA Intergenic MER66C|LTR|ERV1 -52780 NM_182848 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|OSP-L claudin 10 protein-coding 20434 chr3 153051515 153051619 + 0 NA Intergenic Intergenic -110645 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 15073 chr2 15577244 15577324 + 0 NA Intergenic Intergenic -14337 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 21760 chr4 121801251 121801354 + 0 NA promoter-TSS (NM_001034194) promoter-TSS (NM_001034194) -15 NM_005033 5393 Hs.91728 NM_005033 ENSG00000123737 EXOSC9 PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6 exosome component 9 protein-coding 18861 chr22 37199434 37199583 + 0 NA Intergenic CpG 11181 NM_001278687 6753 Hs.225995 NM_001051 ENSG00000278195 SSTR3 SS-3-R|SS3-R|SS3R|SSR-28 somatostatin receptor 3 protein-coding 29333 chr9 78974047 78974207 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR 171539 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 2398 chr1 202047159 202047313 + 0 NA Intergenic Intergenic 36674 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 5036 chr11 26677693 26677861 + 0 NA intron (NM_178498, intron 13 of 14) MamGyp-int|LTR|Gypsy 44250 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 17273 chr2 231662340 231662451 + 0 NA Intergenic CpG -46130 NM_002823 5757 Hs.459927 NM_002823 ENSG00000187514 PTMA TMSA prothymosin, alpha protein-coding 20941 chr3 190345299 190345386 + 0 NA Intergenic Intergenic -22896 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 5290 chr11 58334787 58334944 + 0 NA Intergenic MER88|LTR|ERVL 24204 NM_001005489 219965 Hs.554517 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 15148 chr2 20350891 20351049 + 0 NA promoter-TSS (NM_001282752) promoter-TSS (NM_001282752) -120 NM_015317 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 12452 chr17 40113256 40113383 + 0 NA Intergenic Intergenic -9218 NM_001012241 339287 Hs.532786 NM_001012241 ENSG00000188895 MSL1 MSL-1|hMSL1 male specific lethal 1 homolog protein-coding 9034 chr14 54565369 54565473 + 0 NA Intergenic CpG -2191 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 1836 chr1 156104179 156104333 + 0 NA intron (NM_001282625, intron 3 of 12) intron (NM_001282625, intron 3 of 12) -10414 NM_170707 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 13170 chr17 82450655 82450799 + 0 NA non-coding (NR_036514, exon 1 of 6) non-coding (NR_036514, exon 1 of 6) 104 NM_001100407 79415 Hs.163113 NM_001033046 ENSG00000178927 C17orf62 - chromosome 17 open reading frame 62 protein-coding 10472 chr15 75683926 75684030 + 0 NA intron (NM_001897, intron 5 of 9) intron (NM_001897, intron 5 of 9) 28870 NM_001897 1464 Hs.513044 NM_001897 ENSG00000173546 CSPG4 HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2 chondroitin sulfate proteoglycan 4 protein-coding 24565 chr6 42453167 42453271 + 0 NA Intergenic CpG -1168 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 27404 chr8 12541571 12541592 + 0 NA intron (NR_047662, intron 8 of 8) AluSc|SINE|Alu 104568 NR_040092 100506990 Hs.656893 NR_040091 LOC100506990 - uncharacterized LOC100506990 ncRNA 9576 chr14 92794242 92794263 + 0 NA promoter-TSS (NM_005113) promoter-TSS (NM_005113) 21 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 20464 chr3 155416932 155417082 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger -123307 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 10988 chr16 9091441 9091545 + 0 NA promoter-TSS (NM_014117) promoter-TSS (NM_014117) -187 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 3976 chr10 79981735 79981884 + 0 NA Intergenic CpG -32704 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 6731 chr12 22437180 22437322 + 0 NA Intergenic L1PB1|LINE|L1 -102537 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 2929 chr1 230550612 230550630 + 0 NA Intergenic Intergenic -91835 NM_007357 22796 Hs.211800 NM_007357 ENSG00000135775 COG2 LDLC component of oligomeric golgi complex 2 protein-coding 13089 chr17 79087664 79087811 + 0 NA 3' UTR (NM_001042573, exon 14 of 14) 3' UTR (NM_001042573, exon 14 of 14) 12800 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 5681 chr11 75815060 75815190 + 0 NA promoter-TSS (NM_003369) promoter-TSS (NM_003369) -42 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 7071 chr12 53676040 53676194 + 0 NA promoter-TSS (NM_001330269) promoter-TSS (NM_001330269) 208 NM_005176 517 Hs.524464 NM_005176 ENSG00000135390 ATP5G2 ATP5A ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) protein-coding 2738 chr1 220370502 220370662 + 0 NA Intergenic Intergenic -98081 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 7447 chr12 94202543 94202642 + 0 NA intron (NM_005761, intron 4 of 30) L2c|LINE|L2 53869 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 5629 chr11 72434533 72434637 + 0 NA promoter-TSS (NM_001258392) promoter-TSS (NM_001258392) 99 NM_001258393 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 23290 chr5 137192590 137192659 + 0 NA intron (NM_004598, intron 3 of 10) L2|LINE|L2 64427 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 5179 chr11 36510132 36510132 + 0 NA 5' UTR (NM_004620, exon 1 of 7) 5' UTR (NM_004620, exon 1 of 7) 181 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 18359 chr20 60132538 60132642 + 0 NA Intergenic Intergenic -5902 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 17125 chr2 219498560 219498626 + 0 NA promoter-TSS (NM_013335) promoter-TSS (NM_013335) -272 NM_013335 29926 Hs.27059 NM_013335 ENSG00000144591 GMPPA AAMR GDP-mannose pyrophosphorylase A protein-coding 17441 chr20 1393157 1393212 + 0 NA promoter-TSS (NM_000801) promoter-TSS (NM_000801) -12 NM_000801 2280 Hs.471933 NM_000801 ENSG00000088832 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FK506 binding protein 1A protein-coding 8399 chr13 77558833 77558996 + 0 NA intron (NM_144777, intron 3 of 32) intron (NM_144777, intron 3 of 32) 23240 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 5447 chr11 64878784 64878802 + 0 NA promoter-TSS (NM_006795) promoter-TSS (NM_006795) -25 NM_006795 10938 Hs.523774 NM_006795 ENSG00000110047 EHD1 H-PAST|HPAST1|PAST|PAST1 EH domain containing 1 protein-coding 26834 chr7 112450262 112450377 + 0 NA promoter-TSS (NM_001550) promoter-TSS (NM_001550) -109 NM_001550 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 24936 chr6 97958229 97958333 + 0 NA Intergenic LTR27E|LTR|ERV1 -66250 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 24430 chr6 34426067 34426190 + 0 NA promoter-TSS (NM_001204091) promoter-TSS (NM_001204091) -3 NM_001014 6204 Hs.406620 NM_001014 ENSG00000124614 RPS10 DBA9|S10 ribosomal protein S10 protein-coding 15635 chr2 61971207 61971339 + 0 NA intron (NM_152516, intron 1 of 2) LTR10D|LTR|ERV1 65631 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 15609 chr2 60466415 60466519 + 0 NA intron (NM_022893, intron 3 of 3) intron (NM_022893, intron 3 of 3) -75092 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000223929 MIR4432HG - MIR4432 host gene ncRNA 14543 chr19 45092757 45092893 + 0 NA promoter-TSS (NM_019121) promoter-TSS (NM_019121) -348 NM_019121 284352 Hs.285363 NM_019121 ENSG00000104866 PPP1R37 LRRC68 protein phosphatase 1 regulatory subunit 37 protein-coding 20327 chr3 143283871 143283892 + 0 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) -58365 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 16691 chr2 174973078 174973174 + 0 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 32127 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 6771 chr12 26833134 26833274 + 0 NA promoter-TSS (NM_002223) promoter-TSS (NM_002223) -6 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 6893 chr12 42589643 42589747 + 0 NA promoter-TSS (NM_153026) promoter-TSS (NM_153026) 75 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 27548 chr8 23984500 23984596 + 0 NA Intergenic Intergenic -129741 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 26157 chr7 43729510 43729640 + 0 NA promoter-TSS (NM_001321200) promoter-TSS (NM_001321200) -34 NR_135583 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 25022 chr6 111591511 111591712 + 0 NA exon (NM_001164281, exon 2 of 9) exon (NM_001164281, exon 2 of 9) 14340 NM_147200 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 26121 chr7 41426106 41426210 + 0 NA Intergenic Intergenic -267758 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 4186 chr10 98374648 98374752 + 0 NA Intergenic Intergenic 20607 NR_031619 100302133 NR_031619 ENSG00000119943 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 14269 chr19 18496380 18496484 + 0 NA intron (NM_006532, intron 1 of 11) intron (NM_006532, intron 1 of 11) 25695 NM_006532 8178 Hs.515260 NM_006532 ENSG00000105656 ELL C19orf17|ELL1|MEN|PPP1R68 elongation factor for RNA polymerase II protein-coding 8227 chr13 46554640 46554765 + 0 NA intron (NM_001164211, intron 1 of 19) intron (NM_001164211, intron 1 of 19) 1541 NM_015116 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 5642 chr11 73227955 73228127 + 0 NA 5' UTR (NM_002564, exon 2 of 3) 5' UTR (NM_002564, exon 2 of 3) 9584 NM_176071 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 10995 chr16 10181649 10181753 + 0 NA intron (NM_000833, intron 2 of 13) CpG 366 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 3243 chr10 6088937 6089043 + 0 NA promoter-TSS (NM_032905) promoter-TSS (NM_032905) 4 NM_032905 84991 Hs.498548 NM_032905 ENSG00000134453 RBM17 SPF45 RNA binding motif protein 17 protein-coding 24901 chr6 88963626 88963797 + 0 NA promoter-TSS (NM_003800) promoter-TSS (NM_003800) -82 NM_001286428 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 9893 chr15 38564150 38564299 + 0 NA intron (NM_001306086, intron 1 of 14) CpG 582 NM_005739 10125 Hs.591127 NM_005739 ENSG00000172575 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1 RAS guanyl releasing protein 1 protein-coding 7633 chr12 109840770 109840899 + 0 NA Intergenic Intergenic -7427 NM_021625 59341 Hs.506713 NM_021625 ENSG00000111199 TRPV4 BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel subfamily V member 4 protein-coding 23718 chr5 172283201 172283280 + 0 NA intron (NM_152277, intron 1 of 2) CpG 551 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 30486 chrX 11111165 11111296 + 0 NA promoter-TSS (NM_001122608) promoter-TSS (NM_001122608) -56 NM_001122608 3052 Hs.211571 NM_005333 ENSG00000004961 HCCS CCHL|LSDMCA1|MCOPS7|MLS holocytochrome c synthase protein-coding 12583 chr17 45247855 45247951 + 0 NA promoter-TSS (NR_024434) promoter-TSS (NR_024434) -22 NR_110325 100133991 Hs.668927 NR_024434 ENSG00000267278 MAP3K14-AS1 - MAP3K14 antisense RNA 1 ncRNA 26158 chr7 43839002 43839152 + 0 NA Intergenic Intergenic 30469 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 29636 chr9 96884543 96884653 + 0 NA Intergenic L1MDb|LINE|L1 15698 NR_038890 100132781 Hs.710921 NR_038890 LOC100132781 - cyclin Y like 1 pseudogene pseudo 13836 chr19 633531 633717 + 0 NA promoter-TSS (NM_005035) promoter-TSS (NM_005035) -56 NM_005035 5442 Hs.254113 NM_005035 ENSG00000099821 POLRMT APOLMT|MTRNAP|MTRPOL|h-mtRPOL RNA polymerase mitochondrial protein-coding 249 chr1 17190076 17190180 + 0 NA Intergenic Intergenic -14998 NM_013358 29943 Hs.412941 NM_013358 ENSG00000142623 PADI1 HPAD10|PAD1|PDI|PDI1 peptidyl arginine deiminase 1 protein-coding 8460 chr13 97109964 97110068 + 0 NA Intergenic Intergenic 69606 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 21896 chr4 150257117 150257221 + 0 NA non-coding (NR_036614, exon 17 of 17) non-coding (NR_036614, exon 17 of 17) 178895 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 8096 chr13 33697147 33697374 + 0 NA Intergenic Intergenic -20425 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 1748 chr1 152888297 152888444 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger 10048 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 9484 chr14 84466128 84466160 + 0 NA Intergenic Intergenic -921131 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 858 chr1 50960274 50960454 + 0 NA promoter-TSS (NM_007051) promoter-TSS (NM_007051) -100 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 9655 chr14 99537474 99537578 + 0 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 56124 NM_001099402 8812 Hs.510409 NM_003858 ENSG00000090061 CCNK CPR4 cyclin K protein-coding 22724 chr5 74034914 74035014 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB 221446 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 8643 chr13 113296993 113297110 + 0 NA promoter-TSS (NM_005561) promoter-TSS (NM_005561) -103 NM_005561 3916 Hs.494419 NM_005561 ENSG00000185896 LAMP1 CD107a|LAMPA|LGP120 lysosomal associated membrane protein 1 protein-coding 16769 chr2 181876799 181876893 + 0 NA Intergenic L2a|LINE|L2 -14870 NM_001287504 6744 Hs.196983 NM_006751 ENSG00000138434 SSFA2 CS-1|CS1|KRAP|SPAG13 sperm specific antigen 2 protein-coding 24313 chr6 30102089 30102191 + 0 NA TTS (NM_007028).3 TTS (NM_007028).3 -3100 NR_126470 104533120 Hs.548919 NR_126470 ENSG00000231226 TRIM31-AS1 - TRIM31 antisense RNA 1 ncRNA 10563 chr15 82082547 82082633 + 0 NA Intergenic Intergenic -6004 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 5131 chr11 34251198 34251322 + 0 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 106748 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 25006 chr6 110098666 110098783 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 81280 NM_001024935 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WAS protein family member 1 protein-coding 1479 chr1 109494034 109494111 + 0 NA promoter-TSS (NM_001134402) promoter-TSS (NM_001134402) -7 NM_001134400 284613 Hs.514682 NM_182580 ENSG00000174151 CYB561D1 - cytochrome b561 family member D1 protein-coding 1359 chr1 95257850 95257954 + 0 NA Intergenic Intergenic 23747 NM_001278247 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 13324 chr18 23503431 23503496 + 0 NA promoter-TSS (NM_001318707) promoter-TSS (NM_001318707) -7 NM_013326 29919 Hs.464779 NM_013326 ENSG00000141452 C18orf8 HsT2591|MIC1|Mic-1 chromosome 18 open reading frame 8 protein-coding 8966 chr14 50001609 50001665 + 0 NA non-coding (NR_126500, exon 3 of 3) non-coding (NR_126500, exon 3 of 3) 4882 NR_126496 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 5344 chr11 61481095 61481221 + 0 NA promoter-TSS (NM_001170753) promoter-TSS (NM_001170753) 45 NM_001170753 220004 Hs.729003 NM_145017 ENSG00000162148 PPP1R32 C11orf66|IIIG9 protein phosphatase 1 regulatory subunit 32 protein-coding 8289 chr13 51803722 51803872 + 0 NA intron (NM_001031719, intron 1 of 7) CpG 365 NM_001031719 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 31058 chrX 130339876 130339989 + 0 NA promoter-TSS (NM_001282197) promoter-TSS (NM_001282197) 44 NM_001282198 9016 Hs.194686 NM_003951 ENSG00000102078 SLC25A14 BMCP1|UCP5 solute carrier family 25 member 14 protein-coding 6818 chr12 30953384 30953465 + 0 NA intron (NM_001080509, intron 1 of 7) MIR|SINE|MIR 26520 NM_001080509 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 29052 chr9 34186309 34186412 + 0 NA intron (NM_001171201, intron 1 of 5) intron (NM_001171201, intron 1 of 5) 7355 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 21746 chr4 119454561 119454729 + 0 NA promoter-TSS (NR_135112) promoter-TSS (NR_135112) -17 NR_135112 101926918 Hs.655864 NR_135112 ENSG00000283050 GTF2IP12 - general transcription factor IIi pseudogene 12 pseudo 22872 chr5 91079124 91079228 + 0 NA intron (NM_032119, intron 86 of 89) intron (NM_032119, intron 86 of 89) 235226 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 847 chr1 48004407 48004462 + 0 NA Intergenic MIRb|SINE|MIR -7544 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 479 chr1 28518176 28518313 + 0 NA promoter-TSS (NM_001269) promoter-TSS (NM_001269) 11 NM_001048195 1104 Hs.469723 NM_001269 ENSG00000180198 RCC1 CHC1|RCC1-I|SNHG3-RCC1 regulator of chromosome condensation 1 protein-coding 18906 chr22 38923993 38924097 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -33477 NM_145699 200315 Hs.226307 NM_145699 ENSG00000128383 APOBEC3A A3A|ARP3|PHRBN|bK150C2.1 apolipoprotein B mRNA editing enzyme catalytic subunit 3A protein-coding 26899 chr7 119545226 119545228 + 0 NA Intergenic L4_B_Mam|LINE|RTE-X 362148 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LVCAT5 - liver cancer-associated transcript 5 ncRNA 28148 chr8 86871152 86871274 + 0 NA intron (NM_173538, intron 1 of 10) intron (NM_173538, intron 1 of 10) 4765 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 24857 chr6 83065772 83065876 + 0 NA promoter-TSS (NM_001304437) promoter-TSS (NM_001304437) 17 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 2821 chr1 224922648 224922752 + 0 NA Intergenic LTR41B|LTR|ERVL -6954 NM_001145154 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 21781 chr4 127632828 127632964 + 0 NA promoter-TSS (NM_015693) promoter-TSS (NM_015693) -36 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU INT|PDZD6|PDZK6 inturned planar cell polarity protein protein-coding 2101 chr1 175222325 175222451 + 0 NA Intergenic LTR88b|LTR|Gypsy? -29295 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 8390 chr13 77329167 77329339 + 0 NA Intergenic Intergenic -2211 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|Phr MYC binding protein 2, E3 ubiquitin protein ligase protein-coding 7676 chr12 113149579 113149756 + 0 NA promoter-TSS (NM_001144872) promoter-TSS (NM_001144872) -191 NM_001144872 387885 Hs.486856 NM_001144872 ENSG00000186710 CFAP73 CCDC42B|MIA2 cilia and flagella associated protein 73 protein-coding 9457 chr14 80568210 80568331 + 0 NA intron (NM_152446, intron 19 of 23) intron (NM_152446, intron 19 of 23) -337216 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 17926 chr20 35454739 35454851 + 0 NA promoter-TSS (NM_007186) promoter-TSS (NM_007186) -49 NM_001319138 8200 Hs.1573 NM_000557 ENSG00000125965 GDF5 BDA1C|BMP-14|BMP14|CDMP1|LAP-4|LAP4|OS5|SYM1B|SYNS2 growth differentiation factor 5 protein-coding 9534 chr14 89955767 89955907 + 0 NA promoter-TSS (NM_001008744) promoter-TSS (NM_001008744) -65 NM_001008744 55775 Hs.209945 NM_018319 ENSG00000042088 TDP1 - tyrosyl-DNA phosphodiesterase 1 protein-coding 7995 chr13 25766795 25766899 + 0 NA intron (NM_001313741, intron 25 of 35) intron (NM_001313741, intron 25 of 35) 284213 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 18673 chr22 21942755 21942859 + 0 NA intron (NM_014634, intron 2 of 7) intron (NM_014634, intron 2 of 7) 10071 NM_014634 9647 Hs.112728 NM_014634 ENSG00000100034 PPM1F CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2 protein phosphatase, Mg2+/Mn2+ dependent 1F protein-coding 17368 chr2 238597188 238597292 + 0 NA Intergenic Intergenic -41741 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 9595 chr14 94174079 94174183 + 0 NA promoter-TSS (NM_058237) promoter-TSS (NM_058237) -181 NM_020958 57718 Hs.259599 NM_020958 ENSG00000119698 PPP4R4 CFAP14|KIAA1622|PP4R4 protein phosphatase 4 regulatory subunit 4 protein-coding 4996 chr11 20027292 20027375 + 0 NA intron (NM_001111019, intron 2 of 27) intron (NM_001111019, intron 2 of 27) 4777 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 7680 chr12 113221235 113221383 + 0 NA promoter-TSS (NM_138451) promoter-TSS (NM_138451) -129 NM_017901 53373 Hs.524763 NM_017901 ENSG00000186815 TPCN1 TPC1 two pore segment channel 1 protein-coding 28083 chr8 80485486 80485526 + 0 NA promoter-TSS (NM_001277145) promoter-TSS (NM_001277145) -113 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 9787 chr15 22838539 22838689 + 0 NA promoter-TSS (NM_001008860) promoter-TSS (NM_001008860) -27 NM_001184889 81614 Hs.591003 NM_030922 ENSG00000140157 NIPA2 - non imprinted in Prader-Willi/Angelman syndrome 2 protein-coding 11626 chr16 74607061 74607217 + 0 NA promoter-TSS (NR_027265) promoter-TSS (NR_027265) 5 NM_012201 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 6768 chr12 26402718 26402871 + 0 NA intron (NM_002223, intron 52 of 56) MamRep605|LTR?|LTR? 207221 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 25489 chr6 168895162 168895248 + 0 NA Intergenic Intergenic 69177 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 13636 chr18 57901998 57902038 + 0 NA Intergenic Intergenic -98923 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 4908 chr11 15783600 15783704 + 0 NA Intergenic Intergenic 139767 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 13051 chr17 76737345 76737490 + 0 NA promoter-TSS (NM_001242535) promoter-TSS (NM_001242535) -6 NM_001195427 6427 Hs.584801 NM_003016 ENSG00000161547 SRSF2 PR264|SC-35|SC35|SFRS2|SFRS2A|SRp30b serine and arginine rich splicing factor 2 protein-coding 3334 chr10 15097088 15097090 + 0 NA promoter-TSS (NM_001097590) promoter-TSS (NM_001097590) -91 NM_183005 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 25055 chr6 116616303 116616407 + 0 NA promoter-TSS (NM_001010892) promoter-TSS (NM_001010892) -124 NM_001010892 345895 Hs.160380 NM_001010892 ENSG00000111834 RSPH4A CILD11|RSHL3|RSPH6B|dJ412I7.1 radial spoke head 4 homolog A protein-coding 15746 chr2 69652298 69652442 + 0 NA intron (NM_001320698, intron 1 of 14) intron (NM_001320698, intron 1 of 14) -8525 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 10290 chr15 65057349 65057390 + 0 NA intron (NM_016563, intron 4 of 4) intron (NM_016563, intron 4 of 4) 10743 NM_016563 51285 Hs.27018 NM_016563 ENSG00000103710 RASL12 RIS RAS like family 12 protein-coding 6801 chr12 28021851 28021915 + 0 NA Intergenic Intergenic -49900 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 7312 chr12 78916974 78917078 + 0 NA intron (NM_001135805, intron 2 of 11) AluJb|SINE|Alu 52357 NM_001291901 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 12397 chr17 36948839 36948961 + 0 NA promoter-TSS (NM_012138) promoter-TSS (NM_012138) 25 NM_012138 26574 Hs.195740 NM_012138 ENSG00000275700 AATF BFR2|CHE-1|CHE1|DED apoptosis antagonizing transcription factor protein-coding 5355 chr11 61981392 61981432 + 0 NA Intergenic ORSL-2a|DNA|hAT-Tip100 -13752 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 20034 chr3 122793689 122793793 + 0 NA promoter-TSS (NM_001320728) promoter-TSS (NM_001320728) 78 NM_024610 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 27816 chr8 52629612 52629752 + 0 NA intron (NM_001083617, intron 21 of 23) MER4B|LTR|ERV1 -64221 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 FAM150A AUGA|AUGB|UNQ9433 family with sequence similarity 150 member A protein-coding 377 chr1 24319328 24319432 + 0 NA promoter-TSS (NM_198173) promoter-TSS (NM_198173) 58 NM_198174 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 17004 chr2 208025518 208025622 + 0 NA promoter-TSS (NM_001080475) promoter-TSS (NM_001080475) -10 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 22319 chr5 20679122 20679268 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -103322 NM_001291956 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 16343 chr2 132671505 132671700 + 0 NA promoter-TSS (NM_001077427) promoter-TSS (NM_001077427) -23 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 17596 chr20 10739711 10739815 + 0 NA Intergenic Intergenic -13327 NR_110611 101929395 Hs.244862 NR_110611 ENSG00000224961 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 15475 chr2 45909743 45909847 + 0 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 257891 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 15229 chr2 27321181 27321349 + 0 NA intron (NM_002437, intron 2 of 7) intron (NM_002437, intron 2 of 7) 1837 NM_002437 4358 Hs.75659 NM_002437 ENSG00000115204 MPV17 MTDPS6|SYM1 MPV17, mitochondrial inner membrane protein protein-coding 13263 chr18 10525952 10526056 + 0 NA 5' UTR (NM_003826, exon 1 of 12) 5' UTR (NM_003826, exon 1 of 12) 128 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 612 chr1 35557615 35557767 + 0 NA promoter-TSS (NM_001014839) promoter-TSS (NM_001014839) -101 NM_001014841 23154 Hs.121870 NM_014284 ENSG00000020129 NCDN - neurochondrin protein-coding 5057 chr11 28108161 28108273 + 0 NA promoter-TSS (NM_031217) promoter-TSS (NM_031217) -18 NM_031217 81930 Hs.301052 NM_031217 ENSG00000121621 KIF18A MS-KIF18A|PPP1R99 kinesin family member 18A protein-coding 6547 chr12 6946499 6946548 + 0 NA promoter-TSS (NM_080548) promoter-TSS (NM_080548) -54 NM_080548 5777 Hs.63489 NM_002831 ENSG00000111679 PTPN6 HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1 protein tyrosine phosphatase, non-receptor type 6 protein-coding 11240 chr16 30748152 30748313 + 0 NA promoter-TSS (NM_000294) promoter-TSS (NM_000294) -67 NM_001172432 5261 Hs.65735 NM_000294 ENSG00000156873 PHKG2 GSD9C phosphorylase kinase catalytic subunit gamma 2 protein-coding 3579 chr10 35336356 35336460 + 0 NA promoter-TSS (NM_001282852) promoter-TSS (NM_001282852) -466 NM_145012 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 5234 chr11 46617095 46617252 + 0 NA promoter-TSS (NM_173811) promoter-TSS (NM_173811) 54 NM_173811 283254 Hs.714463 NM_173811 ENSG00000180423 HARBI1 C11orf77 harbinger transposase derived 1 protein-coding 29445 chr9 86557271 86557375 + 0 NA Intergenic Intergenic -202836 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 ZCCHC6 PAPD6|TUT7 zinc finger CCHC-type containing 6 protein-coding 28078 chr8 80230875 80231022 + 0 NA Intergenic Intergenic -10441 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 14451 chr19 40421270 40421420 + 0 NA Intergenic CpG 4680 NM_013376 29950 Hs.269898 NM_013376 ENSG00000197019 SERTAD1 SEI1|TRIP-Br1 SERTA domain containing 1 protein-coding 21118 chr4 2413387 2413522 + 0 NA intron (NM_001172657, intron 1 of 6) intron (NM_001172657, intron 1 of 6) 5189 NM_001172658 57732 Hs.292056 NM_020972 ENSG00000159733 ZFYVE28 LST2|LYST2 zinc finger FYVE-type containing 28 protein-coding 21687 chr4 109433532 109433582 + 0 NA promoter-TSS (NM_001042734) promoter-TSS (NM_001042734) -158 NM_001318086 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 28684 chr8 130420050 130420154 + 0 NA intron (NM_001247996, intron 1 of 30) intron (NM_001247996, intron 1 of 30) 23558 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 6718 chr12 19439477 19439581 + 0 NA promoter-TSS (NM_001114176) promoter-TSS (NM_001114176) -145 NM_001114176 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 30831 chrX 73877016 73877192 + 0 NA Intergenic L1PA15-16|LINE|L1 -24351 NR_001564 7503 Hs.529901 NR_001564 ENSG00000229807 XIST DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66 X inactive specific transcript (non-protein coding) ncRNA 12213 chr17 21043326 21043482 + 0 NA promoter-TSS (NM_015276) promoter-TSS (NM_015276) -365 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 21618 chr4 99763982 99764086 + 0 NA Intergenic Intergenic -52790 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 9215 chr14 64960978 64961005 + 0 NA intron (NM_001330182, intron 1 of 7) (CTGC)n|Simple_repeat|Simple_repeat 11166 NM_001308154 376267 Hs.512492 NM_198686 ENSG00000139998 RAB15 - RAB15, member RAS oncogene family protein-coding 24006 chr6 10163342 10163483 + 0 NA Intergenic Intergenic -248906 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 13822 chr18 79962546 79962561 + 0 NA Intergenic Intergenic -2029 NM_001136180 440498 Hs.191582 NM_001136180 ENSG00000226742 HSBP1L1 - heat shock factor binding protein 1 like 1 protein-coding 23686 chr5 169139831 169139920 + 0 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 123819 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 11509 chr16 67833803 67833907 + 0 NA exon (NM_025082, exon 4 of 16) exon (NM_025082, exon 4 of 16) -8455 NM_020457 57215 Hs.632200 NM_020457 ENSG00000168286 THAP11 CTG-B43a|CTG-B45d|HRIHFB2206|RONIN THAP domain containing 11 protein-coding 8067 chr13 30865431 30865535 + 0 NA Intergenic Intergenic -17079 NR_103813 440132 Hs.729493 NR_103813 ENSG00000236094 LINC00545 - long intergenic non-protein coding RNA 545 ncRNA 21914 chr4 152779784 152779915 + 0 NA promoter-TSS (NM_145720) promoter-TSS (NM_145720) -85 NM_145720 201798 Hs.301243 NM_145720 ENSG00000169989 TIGD4 - tigger transposable element derived 4 protein-coding 4281 chr10 103716366 103716470 + 0 NA intron (NM_014631, intron 5 of 13) intron (NM_014631, intron 5 of 13) -30361 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 1092 chr1 68269740 68269844 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR -37191 NM_024911 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 wntless Wnt ligand secretion mediator protein-coding 8593 chr13 109743813 109743966 + 0 NA Intergenic Intergenic 15615 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 26174 chr7 44618827 44618965 + 0 NA intron (NM_001003941, intron 1 of 8) MER39|LTR|ERV1 12374 NM_002541 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 1756 chr1 153123023 153123162 + 0 NA Intergenic L1PBa|LINE|L1 -9577 NM_001014450 6705 Hs.490252 NM_001014450 ENSG00000244094 SPRR2F - small proline rich protein 2F protein-coding 2255 chr1 188027740 188027819 + 0 NA Intergenic L2a|LINE|L2 584151 NR_132374 106144535 Hs.568709 NR_132374 ENSG00000231599 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 20361 chr3 149225372 149225476 + 0 NA Intergenic Intergenic -3379 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin protein-coding 18309 chr20 57326783 57326890 + 0 NA Intergenic Intergenic -2939 NM_012444 23626 Hs.159737 NM_012444 ENSG00000054796 SPO11 CT35|SPATA43|TOPVIA SPO11, initiator of meiotic double stranded breaks protein-coding 10763 chr15 95149154 95149258 + 0 NA Intergenic MIRc|SINE|MIR 177894 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 26869 chr7 116317464 116317517 + 0 NA Intergenic Intergenic -30763 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 4748 chr11 6473801 6473905 + 0 NA TTS (NM_001242855) TTS (NM_001242855) 131 NM_006458 10612 Hs.591992 NM_006458 ENSG00000110171 TRIM3 BERP|HAC1|RNF22|RNF97 tripartite motif containing 3 protein-coding 22016 chr4 173119996 173120100 + 0 NA Intergenic Intergenic -48705 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 18801 chr22 31248187 31248291 + 0 NA promoter-TSS (NM_001031801) promoter-TSS (NM_001031801) -123 NM_001031801 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 738 chr1 42767158 42767296 + 0 NA promoter-TSS (NM_024097) promoter-TSS (NM_024097) -18 NM_024097 79078 Hs.148845 NM_024097 ENSG00000164008 C1orf50 - chromosome 1 open reading frame 50 protein-coding 484 chr1 28643144 28643287 + 0 NA promoter-TSS (NM_001135218) promoter-TSS (NM_001135218) -123 NM_005644 6883 Hs.530251 NM_005644 ENSG00000120656 TAF12 TAF2J|TAFII20 TATA-box binding protein associated factor 12 protein-coding 17400 chr2 241315173 241315302 + 0 NA promoter-TSS (NM_001321032) promoter-TSS (NM_001321032) 50 NM_001008491 4735 Hs.721234 NM_004404 ENSG00000168385 SEPT2 DIFF6|NEDD-5|NEDD5|Pnutl3|hNedd5 septin 2 protein-coding 1243 chr1 87328401 87328513 + 0 NA promoter-TSS (NM_006769) promoter-TSS (NM_006769) -11 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 29753 chr9 106420696 106420845 + 0 NA Intergenic Intergenic -180158 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 21410 chr4 65511164 65511268 + 0 NA intron (NM_001281765, intron 3 of 17) intron (NM_001281765, intron 3 of 17) 158272 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 21509 chr4 82380449 82380576 + 0 NA Intergenic LTR2752|LTR|ERV1 -6516 NM_002138 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 7860 chr12 124989058 124989179 + 0 NA promoter-TSS (NM_032656) promoter-TSS (NM_032656) 3 NM_032656 57647 Hs.107382 NM_032656 ENSG00000150990 DHX37 DDX37 DEAH-box helicase 37 protein-coding 21487 chr4 78776210 78776303 + 0 NA promoter-TSS (NM_017593) promoter-TSS (NM_017593) -122 NM_017593 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 623 chr1 36149562 36149751 + 0 NA promoter-TSS (NM_001270897) promoter-TSS (NM_001270897) -142 NM_014408 27095 Hs.523131 NM_014408 ENSG00000054116 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 3885 chr10 73168082 73168235 + 0 NA promoter-TSS (NM_001135752) promoter-TSS (NM_001135752) 39 NM_173348 317662 Hs.408577 NM_173348 ENSG00000138286 FAM149B1 KIAA0974 family with sequence similarity 149 member B1 protein-coding 25481 chr6 167224121 167224225 + 0 NA Intergenic MER4C|LTR|ERV1 53580 NM_001145121 401285 Hs.691976 NM_001013683 ENSG00000166984 TCP10L2 bA517H2.3 t-complex 10-like 2 protein-coding 14658 chr19 48720709 48720887 + 0 NA exon (NM_017805, exon 12 of 12) exon (NM_017805, exon 12 of 12) -1079 NM_001130915 284358 Hs.191815 NM_182574 ENSG00000176909 MAMSTR MASTR MEF2 activating motif and SAP domain containing transcriptional regulator protein-coding 8688 chr14 21476560 21476698 + 0 NA promoter-TSS (NM_001163380) promoter-TSS (NM_001163380) 44 NM_001163380 84932 Hs.22399 NM_032846 ENSG00000129472 RAB2B - RAB2B, member RAS oncogene family protein-coding 2382 chr1 201714790 201714894 + 0 NA intron (NM_020443, intron 2 of 29) intron (NM_020443, intron 2 of 29) -4666 NR_049823 100847050 NR_049823 ENSG00000264802 MIR5191 - microRNA 5191 ncRNA 2564 chr1 209433422 209433576 + 0 NA TTS (NM_001104548) TTS (NM_001104548) 1366 NR_029622 406988 NR_029622 ENSG00000230937 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 27262 chr7 155291252 155291356 + 0 NA Intergenic Intergenic -6468 NM_001346590 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 30939 chrX 107685024 107685098 + 0 NA Intergenic Intergenic 31420 NM_001015881 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 12066 chr17 8138941 8139088 + 0 NA Intergenic Intergenic 6057 NR_106943 102465532 NR_106943 ENSG00000179094 MIR6883 hsa-mir-6883 microRNA 6883 ncRNA 10909 chr16 2905934 2906038 + 0 NA Intergenic Intergenic -5993 NM_032296 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 5779 chr11 85844496 85844639 + 0 NA Intergenic Intergenic -10534 NM_001286159 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9 coiled-coil domain containing 83 protein-coding 21583 chr4 90175016 90175061 + 0 NA intron (NM_001145065, intron 1 of 10) L1ME1|LINE|L1 47505 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 14502 chr19 42455862 42455991 + 0 NA intron (NR_073179, intron 1 of 1) intron (NR_073179, intron 1 of 1) -12878 NM_198477 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 27541 chr8 23528733 23528906 + 0 NA promoter-TSS (NM_001317812) promoter-TSS (NM_001317812) 24 NM_016612 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 22317 chr5 20276495 20276599 + 0 NA intron (NM_001291956, intron 1 of 14) L1MA3|LINE|L1 -288303 NM_004934 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 13215 chr18 3013412 3013562 + 0 NA Intergenic Intergenic -1540 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 9621 chr14 96226037 96226128 + 0 NA intron (NM_000623, intron 1 of 2) intron (NM_000623, intron 1 of 2) 21284 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 14845 chr19 57411035 57411189 + 0 NA promoter-TSS (NM_006959) promoter-TSS (NM_006959) -35 NM_001330617 7565 Hs.729403 NM_006959 ENSG00000186272 ZNF17 HPF3|KOX10 zinc finger protein 17 protein-coding 3745 chr10 60956332 60956436 + 0 NA intron (NR_024555, intron 2 of 11) Tigger3b|DNA|TcMar-Tigger -12109 NM_014836 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 7078 chr12 53867649 53867753 + 0 NA Intergenic Intergenic -71091 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 16634 chr2 170123379 170123463 + 0 NA Intergenic Intergenic -54724 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 997 chr1 62436485 62436602 + 0 NA promoter-TSS (NM_003368) promoter-TSS (NM_003368) -169 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 28116 chr8 84119185 84119289 + 0 NA Intergenic Intergenic -63981 NM_001100393 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein-like protein-coding 31094 chrX 135520558 135520690 + 0 NA promoter-TSS (NR_046740) promoter-TSS (NR_046740) -6 NM_182540 203522 Hs.496829 NM_182540 ENSG00000165359 INTS6L DDX26B integrator complex subunit 6 like protein-coding 21373 chr4 54233381 54233485 + 0 NA promoter-TSS (NM_001347830) promoter-TSS (NM_001347830) 351 NM_001347829 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 26243 chr7 48366194 48366298 + 0 NA intron (NM_152701, intron 31 of 61) L2a|LINE|L2 194786 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 11469 chr16 66278214 66278376 + 0 NA Intergenic L1PA15-16|LINE|L1 -88312 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 6840 chr12 32568395 32568499 + 0 NA intron (NM_001330374, intron 2 of 15) intron (NM_001330374, intron 2 of 15) 34154 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 14393 chr19 36214961 36215102 + 0 NA promoter-TSS (NM_152477) promoter-TSS (NM_152477) 53 NM_001042474 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 11040 chr16 14003444 14003544 + 0 NA Intergenic Intergenic 12524 NR_110909 101927311 NR_110909 ENSG00000262097 LOC101927311 - uncharacterized LOC101927311 ncRNA 3394 chr10 21525959 21526112 + 0 NA promoter-TSS (NM_207371) promoter-TSS (NM_207371) -353 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 26016 chr7 33807986 33808139 + 0 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -96849 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 19640 chr3 67654530 67654725 + 0 NA promoter-TSS (NR_109993) promoter-TSS (NR_109993) -13 NM_001177599 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 1649 chr1 147167479 147167612 + 0 NA intron (NR_103871, intron 2 of 6) intron (NR_103871, intron 2 of 6) 5044 NR_103871 5565 Hs.50732 NM_005399 ENSG00000131791 PRKAB2 - protein kinase AMP-activated non-catalytic subunit beta 2 protein-coding 13354 chr18 26549801 26549905 + 0 NA promoter-TSS (NM_001136205) promoter-TSS (NM_001136205) -39 NM_001258221 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 5731 chr11 80595126 80595266 + 0 NA Intergenic Intergenic 167607 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 2226 chr1 184612349 184612447 + 0 NA intron (NM_030806, intron 5 of 5) intron (NM_030806, intron 5 of 5) 142509 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 2878 chr1 227934929 227935082 + 0 NA intron (NM_003395, intron 1 of 3) intron (NM_003395, intron 1 of 3) 6678 NR_049806 100847072 NR_049806 ENSG00000264483 MIR5008 - microRNA 5008 ncRNA 30974 chrX 111151865 111151969 + 0 NA intron (NM_001324330, intron 5 of 15) MER44B|DNA|TcMar-Tigger 28840 NM_001128172 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 4535 chr10 122374482 122374541 + 0 NA promoter-TSS (NM_001001974) promoter-TSS (NM_001001974) -67 NM_001001974 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 30782 chrX 65920696 65920852 + 0 NA Intergenic L1PB1|LINE|L1 -98096 NR_029637 407008 NR_029637 ENSG00000274536 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 17566 chr20 9617200 9617335 + 0 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -102269 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 9065 chr14 55557363 55557467 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB 22677 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 26975 chr7 128455696 128455763 + 0 NA promoter-TSS (NM_001098786) promoter-TSS (NM_001098786) -101 NM_001098786 29923 Hs.706124 NM_013332 ENSG00000135245 HILPDA C7orf68|HIG-2|HIG2 hypoxia inducible lipid droplet associated protein-coding 20480 chr3 156674355 156674496 + 0 NA promoter-TSS (NM_015508) promoter-TSS (NM_015508) 9 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 18693 chr22 24011265 24011395 + 0 NA promoter-TSS (NM_001201429) promoter-TSS (NM_001201429) 15 NM_001201429 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 13080 chr17 78840845 78840937 + 0 NA promoter-TSS (NM_001321291) promoter-TSS (NM_001321291) -364 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 13058 chr17 77286805 77286915 + 0 NA intron (NM_001293695, intron 1 of 10) intron (NM_001293695, intron 1 of 10) -1031 NM_001113492 10801 Hs.440932 NM_006640 ENSG00000184640 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 125 chr1 9129083 9129183 + 0 NA promoter-TSS (NM_024980) promoter-TSS (NM_024980) 37 NM_024980 80045 Hs.632367 NM_024980 ENSG00000180758 GPR157 - G protein-coupled receptor 157 protein-coding 5967 chr11 102256338 102256478 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -61042 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 26822 chr7 111499217 111499321 + 0 NA intron (NM_032549, intron 2 of 5) MLT1H2|LTR|ERVL-MaLR 63022 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 7258 chr12 71720162 71720291 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 34128 NM_018279 55266 Hs.644802 NM_018279 ENSG00000139291 TMEM19 - transmembrane protein 19 protein-coding 27796 chr8 49110412 49110516 + 0 NA Intergenic MER61E|LTR|ERV1 38123 NM_001256597 492307 Hs.49890 NM_001007176 ENSG00000168333 C8orf22 - chromosome 8 open reading frame 22 protein-coding 12853 chr17 64707183 64707330 + 0 NA Intergenic Intergenic -44988 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 5312 chr11 59550389 59550493 + 0 NA Intergenic Intergenic 35528 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 9418 chr14 76961996 76962147 + 0 NA intron (NR_133913, intron 1 of 2) intron (NR_133913, intron 1 of 2) 2433 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 1564 chr1 115546116 115546222 + 0 NA Intergenic Intergenic -95784 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 20780 chr3 182629639 182629681 + 0 NA Intergenic L2c|LINE|L2 -122536 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 23797 chr5 177592106 177592204 + 0 NA promoter-TSS (NM_017510) promoter-TSS (NM_017510) 7 NM_017510 54732 Hs.279929 NM_017510 ENSG00000184840 TMED9 GMP25|HSGP25L2G|p24a2|p24alpha2|p25 transmembrane p24 trafficking protein 9 protein-coding 6935 chr12 47277013 47277128 + 0 NA Intergenic Intergenic 30329 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 30547 chrX 20267010 20267150 + 0 NA promoter-TSS (NM_004586) promoter-TSS (NM_004586) -448 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 29688 chr9 99221891 99222045 + 0 NA promoter-TSS (NR_024532) promoter-TSS (NR_024532) -4 NR_024532 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2, alpha-1,3/1,6-mannosyltransferase protein-coding 26671 chr7 99162547 99162549 + 0 NA Intergenic Intergenic -18428 NM_001199847 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 24798 chr6 74749894 74749998 + 0 NA Intergenic Intergenic 455961 NM_080645 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|UCMD2 collagen type XII alpha 1 chain protein-coding 18203 chr20 50958463 50958608 + 0 NA promoter-TSS (NM_001317034) promoter-TSS (NM_001317034) 29 NM_001317035 8813 Hs.654951 NM_003859 ENSG00000000419 DPM1 CDGIE|MPDS dolichyl-phosphate mannosyltransferase subunit 1, catalytic protein-coding 15054 chr2 14288110 14288264 + 0 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 112771 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 28229 chr8 95100509 95100647 + 0 NA Intergenic Intergenic -27396 NR_132986 105375650 Hs.665518 NR_132986 ENSG00000245080 LOC105375650 - uncharacterized LOC105375650 ncRNA 15808 chr2 73386203 73386310 + 0 NA intron (NM_015120, intron 1 of 22) CpG 498 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1, centrosome and basal body associated protein protein-coding 25820 chr7 21427172 21427319 + 0 NA promoter-TSS (NR_137166) promoter-TSS (NR_137166) -789 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 18710 chr22 25110815 25110968 + 0 NA intron (NR_038941, intron 3 of 4) intron (NR_038941, intron 3 of 4) 1801 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 13765 chr18 71036943 71036949 + 0 NA Intergenic Intergenic -386089 NM_001278515 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding) protein-coding 13580 chr18 50967868 50968003 + 0 NA promoter-TSS (NM_018696) promoter-TSS (NM_018696) -82 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 10522 chr15 79853664 79853768 + 0 NA intron (NR_037654, intron 2 of 2) intron (NR_037654, intron 2 of 2) 43281 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268 methenyltetrahydrofolate synthetase protein-coding 15717 chr2 68157793 68157944 + 0 NA promoter-TSS (NM_138458) promoter-TSS (NM_138458) 38 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 20568 chr3 161371732 161371825 + 0 NA 5' UTR (NM_001040100, exon 1 of 3) 5' UTR (NM_001040100, exon 1 of 3) 305 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 397 chr1 25568589 25568715 + 0 NA 3' UTR (NM_015627, exon 9 of 9) 3' UTR (NM_015627, exon 9 of 9) 25067 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 12810 chr17 61927958 61928062 + 0 NA promoter-TSS (NM_020748) promoter-TSS (NM_020748) 6 NR_026641 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 1096 chr1 68624371 68624475 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -127202 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 22466 chr5 43282038 43282142 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 31134 NM_001324219 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 25427 chr6 159693364 159693468 + 0 NA promoter-TSS (NM_000636) promoter-TSS (NM_000636) -88 NM_000636 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2, mitochondrial protein-coding 17357 chr2 237998684 237998788 + 0 NA intron (NR_037904, intron 4 of 18) L1ME2|LINE|L1 29943 NM_001278305 140739 Hs.471785 NM_080678 ENSG00000184182 UBE2F NCE2 ubiquitin conjugating enzyme E2 F (putative) protein-coding 14738 chr19 51366474 51366611 + 0 NA promoter-TSS (NM_001985) promoter-TSS (NM_001985) -124 NM_001985 2109 Hs.348531 NM_001985 ENSG00000105379 ETFB FP585|MADD electron transfer flavoprotein beta subunit protein-coding 10827 chr15 101489337 101489441 + 0 NA exon (NM_001291309, exon 1 of 20) exon (NM_001291309, exon 1 of 20) 595 NM_138323 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 8430 chr13 85586510 85586624 + 0 NA Intergenic LTR8|LTR|ERV1 212781 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 5757 chr11 83194596 83194726 + 0 NA 5' UTR (NM_001300976, exon 1 of 6) 5' UTR (NM_001300976, exon 1 of 6) 922 NR_125355 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 20307 chr3 142447980 142448117 + 0 NA promoter-TSS (NM_019001) promoter-TSS (NM_019001) 14 NM_001282857 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 2185 chr1 182144411 182144473 + 0 NA Intergenic Intergenic -82730 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 1191 chr1 84633019 84633123 + 0 NA intron (NR_027379, intron 1 of 2) L2c|LINE|L2 1949 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 23898 chr6 3068927 3069077 + 0 NA intron (NM_003804, intron 1 of 10) CpG 5114 NM_001317061 8737 Hs.519842 NM_003804 ENSG00000137275 RIPK1 RIP|RIP-1|RIP1 receptor interacting serine/threonine kinase 1 protein-coding 22165 chr5 2758120 2758304 + 0 NA Intergenic Intergenic 6081 NR_122125 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 23787 chr5 177351886 177351886 + 0 NA promoter-TSS (NM_006816) promoter-TSS (NM_006816) -2 NM_006816 10960 Hs.75864 NM_006816 ENSG00000169223 LMAN2 C5orf8|GP36B|VIP36 lectin, mannose binding 2 protein-coding 24372 chr6 31711372 31711498 + 0 NA TTS (NR_024541) TTS (NR_024541) 2630 NR_003673 79136 Hs.247883 NM_024123 LY6G6E C6orf22|G6e lymphocyte antigen 6 complex, locus G6E pseudo 6264 chr11 124644718 124644728 + 0 NA intron (NM_170601, intron 7 of 9) intron (NM_170601, intron 7 of 9) 8225 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 18689 chr22 23751028 23751132 + 0 NA promoter-TSS (NM_021916) promoter-TSS (NM_021916) 12 NM_021916 7621 Hs.382874 NM_021916 ENSG00000187792 ZNF70 Cos17 zinc finger protein 70 protein-coding 20687 chr3 175386682 175386822 + 0 NA intron (NM_207015, intron 5 of 13) MER44C|DNA|TcMar-Tigger 17212 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 29091 chr9 37079820 37079968 + 0 NA promoter-TSS (NR_036592) promoter-TSS (NR_036592) -2 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus-like nucleoprotein 3, pseudogene pseudo 26272 chr7 50953989 50954043 + 0 NA Intergenic Intergenic -160554 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 20678 chr3 174859202 174859306 + 0 NA promoter-TSS (NM_207015) promoter-TSS (NM_207015) -67 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 19933 chr3 115239843 115240062 + 0 NA Intergenic Intergenic -92672 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 14595 chr19 46546647 46546759 + 0 NA intron (NM_001205281, intron 1 of 3) MLT1J2|LTR|ERVL-MaLR -50791 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMAL2 - paraneoplastic Ma antigen family like 2 protein-coding 19704 chr3 94159070 94159249 + 0 NA Intergenic Intergenic -95936 NM_001195643 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 24638 chr6 47106764 47106772 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -64405 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 29230 chr9 73079504 73079632 + 0 NA Intergenic Intergenic -72163 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 24488 chr6 37169858 37169960 + 0 NA promoter-TSS (NM_001243186) promoter-TSS (NM_001243186) -237 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 31199 chrX 154805454 154805558 + 0 NA promoter-TSS (NM_001166460) promoter-TSS (NM_001166460) 21 NM_001166460 4354 Hs.496984 NM_002436 ENSG00000130830 MPP1 AAG12|DXS552E|EMP55|MRG1|PEMP membrane palmitoylated protein 1 protein-coding 19604 chr3 58585468 58585572 + 0 NA intron (NM_001282714, intron 2 of 4) intron (NM_001282714, intron 2 of 4) 1593 NM_001282713 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 28213 chr8 94357193 94357297 + 0 NA Intergenic Intergenic 79707 NM_001205263 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B (S. cerevisiae) protein-coding 18883 chr22 37934044 37934237 + 0 NA intron (NM_033386, intron 13 of 15) intron (NM_033386, intron 13 of 15) 19507 NM_032561 84645 Hs.517612 NM_032561 ENSG00000128346 C22orf23 EVG1|dJ1039K5.6 chromosome 22 open reading frame 23 protein-coding 11189 chr16 28950712 28950812 + 0 NA promoter-TSS (NM_032815) promoter-TSS (NM_032815) -235 NM_032815 84901 Hs.513470 NM_032815 ENSG00000176953 NFATC2IP ESC2|NIP45|RAD60 nuclear factor of activated T-cells 2 interacting protein protein-coding 15664 chr2 64653793 64653824 + 0 NA 5' UTR (NM_014755, exon 1 of 2) 5' UTR (NM_014755, exon 1 of 2) 104 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2 SERTA domain containing 2 protein-coding 12895 chr17 68101579 68101729 + 0 NA promoter-TSS (NR_027418) promoter-TSS (NR_027418) 99 NR_027418 100499466 Hs.591212 NR_027418 LINC00674 - long intergenic non-protein coding RNA 674 ncRNA 19181 chr3 13451964 13452035 + 0 NA Intergenic MER66A|LTR|ERV1 28054 NR_046690 100874101 Hs.535701 NR_046690 ENSG00000244502 HDAC11-AS1 - HDAC11 antisense RNA 1 ncRNA 20191 chr3 134224425 134224576 + 0 NA intron (NM_001005861, intron 1 of 14) LTR13|LTR|ERVK 26244 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor-like tyrosine kinase protein-coding 15396 chr2 39124314 39124440 + 0 NA Intergenic CpG -3914 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 6432 chr12 632433 632537 + 0 NA intron (NR_122124, intron 2 of 4) L2|LINE|L2 1594 NR_122124 100049716 Hs.655804 NR_122124 ENSG00000177406 LOC100049716 - uncharacterized LOC100049716 ncRNA 14749 chr19 51927338 51927442 + 0 NA promoter-TSS (NM_001031721) promoter-TSS (NM_001031721) -45 NM_024840 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 16753 chr2 180656616 180656720 + 0 NA Intergenic Intergenic -35436 NR_104322 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 13869 chr19 1605573 1605677 + 0 NA promoter-TSS (NM_006830) promoter-TSS (NM_006830) -141 NM_006830 10975 Hs.8372 NM_006830 ENSG00000127540 UQCR11 0710008D09Rik|QCR10|UQCR ubiquinol-cytochrome c reductase, complex III subunit XI protein-coding 13379 chr18 30903693 30903797 + 0 NA Intergenic Intergenic 139070 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 18227 chr20 51985067 51985212 + 0 NA Intergenic Intergenic 120345 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 25941 chr7 28179809 28179913 + 0 NA promoter-TSS (NR_034097) promoter-TSS (NR_034097) -596 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 12916 chr17 69870311 69870415 + 0 NA intron (NR_109972, intron 4 of 4) intron (NR_109972, intron 4 of 4) -91344 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 6811 chr12 29381198 29381336 + 0 NA promoter-TSS (NM_016570) promoter-TSS (NM_016570) -57 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 21772 chr4 124178064 124178168 + 0 NA Intergenic Intergenic 380318 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LOC101927087 - uncharacterized LOC101927087 ncRNA 21019 chr3 194583880 194584078 + 0 NA promoter-TSS (NR_047573) promoter-TSS (NR_047573) -289 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 12644 chr17 49567985 49568134 + 0 NA intron (NR_103773, intron 1 of 2) CpG 6005 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 22270 chr5 16508875 16508979 + 0 NA promoter-TSS (NM_019000) promoter-TSS (NM_019000) 71 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 FAM134B JK-1|JK1 family with sequence similarity 134 member B protein-coding 24537 chr6 41735623 41735759 + 0 NA promoter-TSS (NM_001271944) promoter-TSS (NM_001271944) -164 NM_001271943 7942 Hs.485360 NM_007162 ENSG00000112561 TFEB ALPHATFEB|BHLHE35|TCFEB transcription factor EB protein-coding 26813 chr7 109984838 109984942 + 0 NA Intergenic AluSp|SINE|Alu -24677 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 3981 chr10 80158784 80158888 + 0 NA intron (NM_145869, intron 14 of 16) intron (NM_145869, intron 14 of 16) 26334 NM_001331125 219348 Hs.204947 NM_001012973 ENSG00000189129 PLAC9 - placenta specific 9 protein-coding 23547 chr5 151615600 151615750 + 0 NA Intergenic Intergenic -46731 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 16672 chr2 173075939 173075996 + 0 NA 5' UTR (NM_016653, exon 1 of 20) 5' UTR (NM_016653, exon 1 of 20) 130 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 19497 chr3 49539909 49539924 + 0 NA Intergenic CpG 14450 NR_038866 100132677 Hs.435651 NR_038866 ENSG00000226913 BSN-AS2 - BSN antisense RNA 2 (head to head) ncRNA 16339 chr2 132431074 132431178 + 0 NA intron (NM_001508, intron 1 of 1) (CTCA)n|Simple_repeat|Simple_repeat 14552 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 27871 chr8 55990701 55990805 + 0 NA intron (NM_002350, intron 10 of 12) MER4D0|LTR|ERV1 83148 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 27745 chr8 42271200 42271304 + 0 NA promoter-TSS (NR_040009) promoter-TSS (NR_040009) -50 NM_001242778 3551 Hs.597664 NM_001556 ENSG00000104365 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of nuclear factor kappa B kinase subunit beta protein-coding 25839 chr7 22573071 22573155 + 0 NA non-coding (NR_038393, exon 4 of 4) non-coding (NR_038393, exon 4 of 4) 9776 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 25236 chr6 140463049 140463111 + 0 NA Intergenic Intergenic -220734 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 13310 chr18 22857028 22857142 + 0 NA Intergenic Intergenic -70248 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 10631 chr15 86735879 86735885 + 0 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -196998 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 17504 chr20 4172528 4172687 + 0 NA intron (NM_175842, intron 1 of 8) CpG -20483 NR_033917 728228 Hs.636379 NR_033917 ENSG00000230176 LINC01433 - long intergenic non-protein coding RNA 1433 ncRNA 14206 chr19 15702671 15702824 + 0 NA Intergenic L1PBa|LINE|L1 -25277 NM_013939 26538 Hs.247694 NM_013939 ENSG00000171942 OR10H2 - olfactory receptor family 10 subfamily H member 2 protein-coding 561 chr1 32760318 32760426 + 0 NA intron (NM_020888, intron 1 of 6) intron (NM_020888, intron 1 of 6) -5262 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 18820 chr22 32697903 32698021 + 0 NA intron (NM_001135774, intron 6 of 13) MLT1H|LTR|ERVL-MaLR -102854 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 2112 chr1 177209414 177209598 + 0 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 38118 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 22405 chr5 38872343 38872478 + 0 NA intron (NM_001323505, intron 2 of 17) L2c|LINE|L2 26411 NM_001323504 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 17430 chr20 751067 751077 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 17512 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 29484 chr9 88387932 88387984 + 0 NA promoter-TSS (NM_006717) promoter-TSS (NM_006717) -424 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 24974 chr6 106870237 106870394 + 0 NA Intergenic Intergenic -82890 NR_033557 100422737 Hs.634681 NR_033557 ENSG00000235142 LOC100422737 - uncharacterized LOC100422737 ncRNA 30844 chrX 77786181 77786285 + 0 NA promoter-TSS (NM_000489) promoter-TSS (NM_000489) 36 NM_138270 546 Hs.533526 NM_000489 ENSG00000085224 ATRX ATR2|JMS|MRX52|MRXHF1|RAD54|RAD54L|SFM1|SHS|XH2|XNP|ZNF-HX ATRX, chromatin remodeler protein-coding 16156 chr2 112726731 112726877 + 0 NA Intergenic Intergenic 37873 NR_130712 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 23780 chr5 176647369 176647473 + 0 NA promoter-TSS (NM_130465) promoter-TSS (NM_130465) 34 NM_012171 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 16025 chr2 101125114 101125230 + 0 NA intron (NM_001330348, intron 1 of 19) intron (NM_001330348, intron 1 of 19) 26275 NM_001102426 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 20260 chr3 139343937 139344073 + 0 NA promoter-TSS (NM_020191) promoter-TSS (NM_020191) -14 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 27269 chr7 155702678 155702750 + 0 NA intron (NM_053043, intron 6 of 17) intron (NM_053043, intron 6 of 17) 58205 NM_053043 155435 Hs.591815 NM_053043 ENSG00000184863 RBM33 PRR8 RNA binding motif protein 33 protein-coding 15344 chr2 36461393 36461497 + 0 NA intron (NM_016441, intron 4 of 16) intron (NM_016441, intron 4 of 16) 105218 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 14997 chr2 10514814 10514918 + 0 NA Intergenic Intergenic 65138 NR_110597 101929715 Hs.634550 NR_110597 LOC101929715 - uncharacterized LOC101929715 ncRNA 1769 chr1 153633941 153634071 + 0 NA promoter-TSS (NM_001206612) promoter-TSS (NM_001206612) 24 NM_001317077 26097 Hs.611057 NM_015607 ENSG00000160679 CHTOP C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704 chromatin target of PRMT1 protein-coding 26128 chr7 41996412 41996516 + 0 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 240555 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 12425 chr17 38799926 38800031 + 0 NA promoter-TSS (NM_003559) promoter-TSS (NM_003559) -73 NM_003559 8396 Hs.260603 NM_003559 ENSG00000276293 PIP4K2B PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB phosphatidylinositol-5-phosphate 4-kinase type 2 beta protein-coding 16404 chr2 142874388 142874587 + 0 NA Intergenic Intergenic -3139 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 7148 chr12 56985856 56986003 + 0 NA Intergenic Intergenic -8642 NM_007264 11318 Hs.483909 NM_007264 ENSG00000166856 GPR182 7TMR|ADMR|AM-R|AMR|G10D|gamrh|hrhAMR G protein-coupled receptor 182 protein-coding 5087 chr11 31369742 31369866 + 0 NA promoter-TSS (NM_181807) promoter-TSS (NM_181807) 6 NM_181807 341019 Hs.127405 NM_181807 ENSG00000170959 DCDC1 - doublecortin domain containing 1 protein-coding 15692 chr2 66364540 66364644 + 0 NA Intergenic Intergenic -6264 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 20615 chr3 169669116 169669247 + 0 NA Intergenic CpG -5406 NM_004991 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 4027 chr10 86939565 86939643 + 0 NA intron (NM_024756, intron 6 of 6) intron (NM_024756, intron 6 of 6) -16197 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 24393 chr6 32195663 32195753 + 0 NA promoter-TSS (NM_022107).7 promoter-TSS (NM_022107).7 -185 NM_022107 63940 Hs.520046 NM_022107 ENSG00000213654 GPSM3 AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1 G-protein signaling modulator 3 protein-coding 21333 chr4 48016696 48016741 + 0 NA promoter-TSS (NM_207330) promoter-TSS (NM_207330) -54 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 20394 chr3 150546689 150546722 + 0 NA promoter-TSS (NM_001319043) promoter-TSS (NM_001319043) 27 NM_001319045 83939 Hs.655782 NM_032025 ENSG00000144895 EIF2A CDA02|EIF-2A|MST089|MSTP004|MSTP089 eukaryotic translation initiation factor 2A protein-coding 6707 chr12 18748149 18748185 + 0 NA Intergenic Intergenic 10056 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line alpha subunit 3 protein-coding 13114 chr17 81044060 81044164 + 0 NA intron (NM_006340, intron 1 of 14) intron (NM_006340, intron 1 of 14) 8965 NM_006340 10458 Hs.128316 NM_006340 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1 associated protein 2 protein-coding 26202 chr7 46281239 46281343 + 0 NA Intergenic Intergenic -360019 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 17609 chr20 11377171 11377275 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -103840 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 17146 chr2 221494685 221494789 + 0 NA intron (NM_001304536, intron 5 of 18) intron (NM_001304536, intron 5 of 18) 77621 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 26322 chr7 56004890 56004994 + 0 NA Intergenic MER54A|LTR|ERVL 40365 NM_001483 2631 Hs.591069 NM_001483 ENSG00000146729 GBAS NIPSNAP2 glioblastoma amplified sequence protein-coding 19909 chr3 113577906 113578010 + 0 NA intron (NR_136285, intron 4 of 20) MER63A|DNA|hAT-Blackjack -16918 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 27805 chr8 50188936 50189025 + 0 NA intron (NM_001321778, intron 2 of 16) ERVL-B4-int|LTR|ERVL 24849 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 8503 chr13 99606691 99606847 + 0 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 105 NM_206808 171425 Hs.655642 NM_206808 ENSG00000125246 CLYBL CLB citrate lyase beta like protein-coding 25631 chr7 6448499 6448603 + 0 NA promoter-TSS (NM_001142936) promoter-TSS (NM_001142936) -539 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 15113 chr2 18210328 18210432 + 0 NA Intergenic Intergenic 331723 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 7236 chr12 67483988 67484000 + 0 NA Intergenic Intergenic -36088 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LOC100507175 - uncharacterized LOC100507175 ncRNA 17056 chr2 213995604 213995708 + 0 NA intron (NR_047660, intron 11 of 14) MamGypLTR1a|LTR|Gypsy 237589 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 30035 chr9 121201965 121202069 + 0 NA promoter-TSS (NM_016322) promoter-TSS (NM_016322) 70 NM_016322 51552 Hs.371563 NM_016322 ENSG00000119396 RAB14 FBP|RAB-14 RAB14, member RAS oncogene family protein-coding 19738 chr3 98680977 98681081 + 0 NA Intergenic AluSp|SINE|Alu -51207 NM_001271146 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 5169 chr11 36149802 36149944 + 0 NA intron (NM_174902, intron 4 of 5) (CTCATGA)n|Simple_repeat|Simple_repeat -71972 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 24591 chr6 43427827 43427963 + 0 NA intron (NM_001198934, intron 1 of 21) CpG 341 NM_001198934 89845 Hs.55879 NM_033450 ENSG00000124574 ABCC10 EST182763|MRP7|SIMRP7 ATP binding cassette subfamily C member 10 protein-coding 18098 chr20 45779035 45779182 + 0 NA intron (NM_080614, intron 4 of 6) MIRc|SINE|MIR 12800 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 17978 chr20 38173439 38173543 + 0 NA Intergenic Intergenic -6913 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 16298 chr2 128318841 128318945 + 0 NA promoter-TSS (NM_004807) promoter-TSS (NM_004807) -296 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 14179 chr19 14117808 14117912 + 0 NA promoter-TSS (NM_002730) promoter-TSS (NM_002730) -113 NM_002730 5566 Hs.631630 NM_002730 ENSG00000072062 PRKACA PKACA|PPNAD4 protein kinase cAMP-activated catalytic subunit alpha protein-coding 26312 chr7 55365919 55366071 + 0 NA 5' UTR (NM_018697, exon 1 of 9) 5' UTR (NM_018697, exon 1 of 9) 547 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 15715 chr2 67917510 67917611 + 0 NA Intergenic Intergenic -91998 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 22279 chr5 16897337 16897532 + 0 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 38842 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 21502 chr4 81237918 81237929 + 0 NA Intergenic L2a|LINE|L2 -22806 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PRKGR2|cGK2|cGKII protein kinase, cGMP-dependent, type II protein-coding 19258 chr3 23945857 23946008 + 0 NA promoter-TSS (NM_001145425) promoter-TSS (NM_001145425) -189 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 7765 chr12 121016454 121016558 + 0 NA promoter-TSS (NM_001286191) promoter-TSS (NM_001286191) -4 NM_001286197 64897 Hs.528671 NM_022895 ENSG00000157895 C12orf43 - chromosome 12 open reading frame 43 protein-coding 17711 chr20 18973643 18973747 + 0 NA Intergenic Intergenic -143492 NM_001302818 100128496 Hs.664484 NM_001242671 C20orf78 dJ1068E13.1 chromosome 20 open reading frame 78 protein-coding 24802 chr6 75284946 75285035 + 0 NA promoter-TSS (NM_001143958) promoter-TSS (NM_001143958) -24 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 1569 chr1 115782982 115783086 + 0 NA Intergenic Intergenic -14229 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 31206 chrX 155881183 155881367 + 0 NA promoter-TSS (NM_001145149) promoter-TSS (NM_001145149) -5 NM_001145149 6845 Hs.24167 NM_005638 ENSG00000124333 VAMP7 SYBL1|TI-VAMP|TIVAMP|VAMP-7 vesicle associated membrane protein 7 protein-coding 15558 chr2 54574339 54574470 + 0 NA intron (NM_178313, intron 1 of 30) intron (NM_178313, intron 1 of 30) 16010 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 17833 chr20 31185338 31185486 + 0 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -72252 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 12195 chr17 19362621 19362749 + 0 NA promoter-TSS (NM_001321218) promoter-TSS (NM_001321218) 53 NM_001321219 27077 Hs.309467 NM_015681 ENSG00000108641 B9D1 B9|EPPB9|JBTS27|MKS9|MKSR1 B9 domain containing 1 protein-coding 28889 chr9 4334559 4334678 + 0 NA Intergenic Intergenic -34583 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 15222 chr2 27051514 27051618 + 0 NA promoter-TSS (NM_001035507) promoter-TSS (NM_001035507) -57 NM_021831 60509 Hs.138207 NM_021831 ENSG00000084693 AGBL5 CCP5|RP75 ATP/GTP binding protein like 5 protein-coding 7915 chr12 132710597 132710785 + 0 NA promoter-TSS (NM_138575) promoter-TSS (NM_138575) -116 NM_138575 192111 Hs.102558 NM_138575 ENSG00000247077 PGAM5 BXLBV68 PGAM family member 5, mitochondrial serine/threonine protein phosphatase protein-coding 15900 chr2 85410362 85410422 + 0 NA promoter-TSS (NM_001320732) promoter-TSS (NM_001320732) -83 NM_001320733 822 Hs.516155 NM_001747 ENSG00000042493 CAPG AFCP|HEL-S-66|MCP capping actin protein, gelsolin like protein-coding 15258 chr2 28436772 28436919 + 0 NA Intergenic Intergenic -42173 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 18016 chr20 40963109 40963208 + 0 NA Intergenic Intergenic -17603 NM_001318197 100128988 Hs.636443 NM_001318196 LOC100128988 - uncharacterized LOC100128988 protein-coding 16860 chr2 195756663 195756767 + 0 NA intron (NM_018897, intron 61 of 64) AluJb|SINE|Alu 99587 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 24724 chr6 54860858 54860962 + 0 NA intron (NM_001010872, intron 1 of 4) intron (NM_001010872, intron 1 of 4) 14139 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 20388 chr3 150371922 150372069 + 0 NA Intergenic Intergenic -36340 NR_130136 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 16600 chr2 165794164 165794282 + 0 NA promoter-TSS (NM_004482) promoter-TSS (NM_004482) 70 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 13177 chr17 82551902 82552006 + 0 NA intron (NM_004514, intron 1 of 8) intron (NM_004514, intron 1 of 8) 32236 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 530 chr1 31644932 31645014 + 0 NA promoter-TSS (NR_033688) promoter-TSS (NR_033688) 264 NM_012392 553115 Hs.470417 NM_012392 ENSG00000162517 PEF1 ABP32|PEF1A penta-EF-hand domain containing 1 protein-coding 19031 chr22 46596989 46597123 + 0 NA Intergenic Intergenic -23346 NM_015124 23151 Hs.475150 NM_015124 ENSG00000075240 GRAMD4 DIP|dA59H18.1|dJ439F8.1 GRAM domain containing 4 protein-coding 3805 chr10 68331879 68332022 + 0 NA promoter-TSS (NM_001322446) promoter-TSS (NM_001322446) -61 NM_012207 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 3067 chr1 240797256 240797360 + 0 NA intron (NM_001282778, intron 16 of 16) intron (NM_001282778, intron 16 of 16) -185146 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 27515 chr8 22650971 22651075 + 0 NA intron (NM_018688, intron 1 of 8) MLT1F|LTR|ERVL-MaLR -8814 NR_027715 80094 Hs.675917 NM_025026 BIN3-IT1 - BIN3 intronic transcript 1 ncRNA 23023 chr5 112479568 112479672 + 0 NA Intergenic LTR88a|LTR|Gypsy? 60037 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-AS2 - EPB41L4A antisense RNA 2 (head to head) ncRNA 10424 chr15 73388440 73388544 + 0 NA Intergenic Intergenic -19228 NM_005477 10021 Hs.86941 NM_005477 ENSG00000138622 HCN4 SSS2 hyperpolarization activated cyclic nucleotide gated potassium channel 4 protein-coding 7971 chr13 23929148 23929252 + 0 NA intron (NR_073430, intron 3 of 4) LTR79|LTR|ERVL 20115 NR_073430 400110 Hs.744780 NM_207439 ANKRD20A19P - ankyrin repeat domain 20 family member A19, pseudogene pseudo 22746 chr5 76711605 76711750 + 0 NA promoter-TSS (NR_028375) promoter-TSS (NR_028375) -726 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 11929 chr17 2892668 2892806 + 0 NA intron (NM_001330058, intron 2 of 24) MLT1G|LTR|ERVL-MaLR 73158 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 9320 chr14 71291144 71291248 + 0 NA Intergenic Intergenic -107141 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 470 chr1 28193868 28193997 + 0 NA promoter-TSS (NM_001164722) promoter-TSS (NM_001164722) 4 NM_001164721 5724 Hs.77542 NM_000952 ENSG00000169403 PTAFR PAFR platelet activating factor receptor protein-coding 28033 chr8 73878822 73878916 + 0 NA promoter-TSS (NM_001271015) promoter-TSS (NM_001271015) 41 NM_001271015 55284 Hs.128841 NM_018299 ENSG00000104343 UBE2W UBC-16|UBC16 ubiquitin conjugating enzyme E2 W protein-coding 23555 chr5 151870988 151871092 + 0 NA intron (NM_001146040, intron 3 of 8) intron (NM_001146040, intron 3 of 8) 53796 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 11113 chr16 21301422 21301554 + 0 NA intron (NR_026675, intron 1 of 2) CpG 639 NR_026675 400508 Hs.578949 NM_001101368 CRYM-AS1 NCRNA00169 CRYM antisense RNA 1 ncRNA 4142 chr10 96586534 96586638 + 0 NA intron (NM_020123, intron 1 of 14) CpG 466 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 24771 chr6 70668428 70668532 + 0 NA promoter-TSS (NM_001281440) promoter-TSS (NM_001281440) -50 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 31106 chrX 136880756 136880860 + 0 NA promoter-TSS (NM_001164803) promoter-TSS (NM_001164803) -28 NM_001164803 27316 Hs.380118 NM_002139 ENSG00000147274 RBMX HNRNPG|HNRPG|MRXS11|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein, X-linked protein-coding 27149 chr7 142783436 142783438 + 0 NA Intergenic Intergenic 12494 NR_130149 5645 Hs.449281 NM_002770 ENSG00000275896 PRSS2 TRY2|TRY8|TRYP2 protease, serine 2 protein-coding 14496 chr19 42325428 42325548 + 0 NA promoter-TSS (NM_001271938) promoter-TSS (NM_001271938) -121 NM_001410 1954 Hs.132483 NM_001410 ENSG00000105429 MEGF8 C19orf49|CRPT2|EGFL4|SBP1 multiple EGF like domains 8 protein-coding 28770 chr8 140834952 140835056 + 0 NA intron (NM_153831, intron 7 of 31) intron (NM_153831, intron 7 of 31) -102351 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 24236 chr6 26457877 26457981 + 0 NA promoter-TSS (NM_007049) promoter-TSS (NM_007049) 25 NM_001197233 11120 Hs.159028 NM_007049 ENSG00000112763 BTN2A1 BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1 butyrophilin subfamily 2 member A1 protein-coding 19968 chr3 118688744 118688877 + 0 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 47042 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 654 chr1 37931856 37932011 + 0 NA promoter-TSS (NM_001297434) promoter-TSS (NM_001297434) -142 NM_001297434 3633 Hs.449942 NM_005540 ENSG00000204084 INPP5B 5PTase inositol polyphosphate-5-phosphatase B protein-coding 16818 chr2 190358762 190358866 + 0 NA intron (NM_001128928, intron 2 of 6) intron (NM_001128928, intron 2 of 6) 15344 NM_002194 3628 Hs.32309 NM_002194 ENSG00000151689 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 11582 chr16 70707270 70707310 + 0 NA intron (NM_018052, intron 14 of 18) intron (NM_018052, intron 14 of 18) -21239 NM_138383 92154 Hs.432387 NM_138383 ENSG00000132613 MTSS1L ABBA|ABBA-1|ABBA1 MTSS1L, I-BAR domain containing protein-coding 156 chr1 10779324 10779428 + 0 NA intron (NM_017766, intron 1 of 15) intron (NM_017766, intron 1 of 15) 17300 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 3993 chr10 80498906 80499010 + 0 NA intron (NM_001128309, intron 2 of 5) intron (NM_001128309, intron 2 of 5) -32292 NR_120662 102723703 Hs.308615 NR_120662 LOC102723703 - uncharacterized LOC102723703 ncRNA 10186 chr15 58866235 58866427 + 0 NA Intergenic MER58A|DNA|hAT-Charlie 67345 NM_024755 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 29909 chr9 113376883 113377032 + 0 NA promoter-TSS (NM_031219) promoter-TSS (NM_031219) 52 NM_001304510 81932 Hs.7739 NM_031219 ENSG00000119431 HDHD3 2810435D12Rik|C9orf158 haloacid dehalogenase like hydrolase domain containing 3 protein-coding 12282 chr17 29155354 29155458 + 0 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) -15027 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 19648 chr3 69231949 69232053 + 0 NA intron (NM_015123, intron 7 of 22) intron (NM_015123, intron 7 of 22) -109406 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 18717 chr22 25462699 25462803 + 0 NA Intergenic Intergenic 7105 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 7150 chr12 57078817 57078894 + 0 NA promoter-TSS (NM_001130963) promoter-TSS (NM_001130963) -64 NM_015257 23306 Hs.591040 NM_015257 ENSG00000166881 NEMP1 TMEM194|TMEM194A nuclear envelope integral membrane protein 1 protein-coding 19266 chr3 24524446 24524461 + 0 NA Intergenic Intergenic -3018 NR_039955 100616448 NR_039955 ENSG00000265028 MIR4792 miR-4792 microRNA 4792 ncRNA 17828 chr20 30376835 30376876 + 0 NA promoter-TSS (NR_003579) promoter-TSS (NR_003579) -348 NR_003579 284802 Hs.653099 NM_207350 FRG1BP C20orf80|FRG1B|bA348I14.2 FSHD region gene 1 family member B, pseudogene pseudo 29706 chr9 100586171 100586275 + 0 NA exon (NM_001018116, exon 2 of 2) exon (NM_001018116, exon 2 of 2) 8144 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 MURC CAVIN4|cavin-4 muscle related coiled-coil protein protein-coding 17464 chr20 2349958 2350062 + 0 NA Intergenic Intergenic -30898 NM_198994 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 25159 chr6 132512763 132512794 + 0 NA promoter-TSS (NM_001326578) promoter-TSS (NM_001326578) 17 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 23768 chr5 175534155 175534259 + 0 NA Intergenic Intergenic 55709 NM_001322978 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 TCC sideroflexin 1 protein-coding 23679 chr5 168360061 168360115 + 0 NA intron (NM_015238, intron 1 of 22) Kanga1b|DNA|TcMar-Tc2 68028 NM_001161662 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 8890 chr14 36764263 36764367 + 0 NA intron (NM_030631, intron 3 of 9) LTR88b|LTR|Gypsy? 106747 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 30875 chrX 100644074 100644199 + 0 NA promoter-TSS (NM_014467) promoter-TSS (NM_014467) -30 NM_014467 27286 Hs.306339 NM_014467 ENSG00000102359 SRPX2 BPP|CBPS|PMGX|RESDX|SRPUL sushi repeat containing protein, X-linked 2 protein-coding 29226 chr9 72888133 72888237 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -14076 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 3382 chr10 21336779 21336883 + 0 NA Intergenic Intergenic 159810 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 2895 chr1 228457899 228458042 + 0 NA promoter-TSS (NM_033445) promoter-TSS (NM_033445) -111 NM_033445 92815 Hs.26331 NM_033445 ENSG00000181218 HIST3H2A - histone cluster 3 H2A protein-coding 12157 chr17 17237091 17237250 + 0 NA promoter-TSS (NM_144997) promoter-TSS (NM_144997) 18 NM_144997 201163 Hs.31652 NM_144606 ENSG00000154803 FLCN BHD|FLCL folliculin protein-coding 7616 chr12 108696484 108696627 + 0 NA intron (NM_014325, intron 2 of 10) intron (NM_014325, intron 2 of 10) 6443 NM_001105237 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 38 chr1 2199461 2199565 + 0 NA 5' UTR (NM_001282670, exon 4 of 8) 5' UTR (NM_001282670, exon 4 of 8) -4738 NR_046427 199990 Hs.107101 NM_182533 ENSG00000162585 FAAP20 C1orf86|FP7162 Fanconi anemia core complex associated protein 20 protein-coding 3874 chr10 72354941 72354993 + 0 NA exon (NM_001002762, exon 1 of 8) exon (NM_001002762, exon 1 of 8) 182 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 23811 chr5 178786176 178786280 + 0 NA intron (NR_135095, intron 4 of 10) Tigger17c|DNA|TcMar-Tigger 32207 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 16386 chr2 138122487 138122571 + 0 NA Intergenic Intergenic 20645 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 29625 chr9 96418514 96418664 + 0 NA promoter-TSS (NM_153695) promoter-TSS (NM_153695) -202 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 196 chr1 14704972 14705015 + 0 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 106276 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 26025 chr7 33980189 33980192 + 0 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 75279 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 16192 chr2 118088232 118088361 + 0 NA promoter-TSS (NM_016133) promoter-TSS (NM_016133) -122 NM_001321330 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 16200 chr2 118738621 118738769 + 0 NA Intergenic Intergenic 109488 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 17937 chr20 35742438 35742592 + 0 NA promoter-TSS (NM_001242599) promoter-TSS (NM_001242599) -179 NM_004902 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 16237 chr2 121092242 121092346 + 0 NA Intergenic MER77B|LTR|ERVL 192908 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 5669 chr11 74592445 74592607 + 0 NA promoter-TSS (NR_046410) promoter-TSS (NR_046410) -4 NR_046409 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 9682 chr14 101073328 101073435 + 0 NA TTS (NR_047664) TTS (NR_047664) 3470 NR_047664 100507257 Hs.301755 NR_047664 ENSG00000223403 MEG9 LINC00584 maternally expressed 9 (non-protein coding) ncRNA 8492 chr13 98972758 98972798 + 0 NA intron (NM_001130049, intron 1 of 32) intron (NM_001130049, intron 1 of 32) 5306 NM_001130048 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 12215 chr17 21126841 21126990 + 0 NA promoter-TSS (NM_015510) promoter-TSS (NM_015510) -13 NM_015510 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 28781 chr8 141308336 141308440 + 0 NA Intergenic CpG -32161 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 17293 chr2 233211354 233211458 + 0 NA Intergenic Intergenic -40165 NM_001190266 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 15794 chr2 72825682 72825786 + 0 NA intron (NR_135774, intron 1 of 19) CpG 308 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2 exocyst complex component 6B protein-coding 13382 chr18 31042834 31042973 + 0 NA promoter-TSS (NM_001941) promoter-TSS (NM_001941) -88 NM_024423 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 21653 chr4 103498382 103498486 + 0 NA Intergenic Intergenic 73392 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LOC101929448 - uncharacterized LOC101929448 ncRNA 1020 chr1 64133172 64133276 + 0 NA intron (NM_005012, intron 4 of 8) L2c|LINE|L2 -19433 NR_110665 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 2173 chr1 181159490 181159648 + 0 NA Intergenic Intergenic -14915 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 6287 chr11 125569317 125569434 + 0 NA promoter-TSS (NM_001330419) promoter-TSS (NM_001330419) -12 NM_001290135 9538 Hs.643514 NM_004879 ENSG00000149547 EI24 EPG4|PIG8|TP53I8 EI24, autophagy associated transmembrane protein protein-coding 25185 chr6 135054775 135054902 + 0 NA promoter-TSS (NM_001145158) promoter-TSS (NM_001145158) 60 NM_001145158 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 14835 chr19 57191428 57191498 + 0 NA promoter-TSS (NM_003417) promoter-TSS (NM_003417) -37 NM_003417 9422 Hs.515634 NM_003417 ENSG00000083844 ZNF264 - zinc finger protein 264 protein-coding 28226 chr8 94949344 94949503 + 0 NA promoter-TSS (NM_001135733) promoter-TSS (NM_001135733) -36 NM_001135733 94241 Hs.492261 NM_033285 ENSG00000164938 TP53INP1 SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1 tumor protein p53 inducible nuclear protein 1 protein-coding 19480 chr3 48717231 48717360 + 0 NA promoter-TSS (NM_001190316) promoter-TSS (NM_001190316) -17 NR_027437 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|PIUS inositol hexakisphosphate kinase 2 protein-coding 10783 chr15 97977904 97978059 + 0 NA Intergenic LTR9D|LTR|ERV1 17278 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 8014 chr13 27251245 27251349 + 0 NA promoter-TSS (NM_000982).2 promoter-TSS (NM_000982).2 -258 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 9478 chr14 81436367 81436574 + 0 NA Intergenic CpG -9066 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 8499 chr13 99228862 99228870 + 0 NA intron (NR_026644, intron 1 of 8) intron (NR_026644, intron 1 of 8) 27957 NM_177967 337867 Hs.508545 NM_177967 ENSG00000134882 UBAC2 PHGDHL1 UBA domain containing 2 protein-coding 10037 chr15 47621446 47621550 + 0 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -96991 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 16121 chr2 110204984 110205068 + 0 NA promoter-TSS (NM_000272) promoter-TSS (NM_000272) 36 NM_001128179 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 7888 chr12 130818456 130818560 + 0 NA intron (NM_194356, intron 3 of 10) MIRb|SINE|MIR 20766 NM_194356 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 27555 chr8 24415170 24415274 + 0 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -25774 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 26252 chr7 49401268 49401372 + 0 NA Intergenic Intergenic -372341 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 4129 chr10 95908113 95908217 + 0 NA intron (NM_001130446, intron 1 of 7) CpG 200 NM_001130446 100127889 Hs.719076 NM_001098847 ENSG00000188649 C10orf131 bA690P14.3 chromosome 10 open reading frame 131 protein-coding 28250 chr8 96328134 96328238 + 0 NA intron (NM_001290225, intron 8 of 10) intron (NM_001290225, intron 8 of 10) 58462 NR_125829 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 8514 chr13 101416328 101416418 + 0 NA promoter-TSS (NM_052867) promoter-TSS (NM_052867) 89 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 26259 chr7 50446650 50446794 + 0 NA exon (NM_001042762, exon 4 of 4) exon (NM_001042762, exon 4 of 4) 3684 NM_001287496 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 21800 chr4 129096092 129096196 + 0 NA promoter-TSS (NM_001099783) promoter-TSS (NM_001099783) 17 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 20866 chr3 186567220 186567324 + 0 NA promoter-TSS (NM_018138) promoter-TSS (NM_018138) 82 NM_018138 55171 Hs.518469 NM_018138 ENSG00000113838 TBCCD1 - TBCC domain containing 1 protein-coding 4937 chr11 16956948 16957052 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 57416 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 15608 chr2 60354866 60355005 + 0 NA Intergenic Intergenic 28101 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000223929 MIR4432HG - MIR4432 host gene ncRNA 14878 chr19 58499416 58499512 + 0 NA intron (NM_001321196, intron 7 of 9) CpG-15322 12601 NM_001321196 10998 Hs.292177 NM_012254 ENSG00000083807 SLC27A5 ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2 solute carrier family 27 member 5 protein-coding 13561 chr18 49732165 49732249 + 0 NA Intergenic Intergenic 81674 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 1989 chr1 165482279 165482445 + 0 NA non-coding (NR_026744, exon 6 of 7) non-coding (NR_026744, exon 6 of 7) -37007 NM_006917 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 20643 chr3 171351711 171351815 + 0 NA intron (NR_027767, intron 2 of 2) intron (NR_027767, intron 2 of 2) 108645 NM_001161564 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 12129 chr17 15920785 15920883 + 0 NA Intergenic Intergenic -24083 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 24585 chr6 43170972 43171076 + 0 NA promoter-TSS (NM_003131) promoter-TSS (NM_003131) -271 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 26599 chr7 92916908 92917026 + 0 NA non-coding (NR_110088, exon 2 of 2) non-coding (NR_110088, exon 2 of 2) -80340 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 4035 chr10 87862284 87862458 + 0 NA exon (NM_001126049, exon 1 of 1) exon (NM_001126049, exon 1 of 1) 1066 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53-regulated DNA replication inhibitor protein-coding 23631 chr5 159826580 159826684 + 0 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 44752 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 4120 chr10 95374719 95374823 + 0 NA intron (NM_001034954, intron 17 of 30) Tigger16a|DNA|TcMar-Tigger 66409 NM_001034955 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 18576 chr21 43373125 43373251 + 0 NA Intergenic Intergenic -10839 NR_131902 101928399 Hs.517319 NR_131902 ENSG00000237989 LINC01679 TCONS_00029157 long intergenic non-protein coding RNA 1679 ncRNA 30968 chrX 110026343 110026447 + 0 NA intron (NM_032227, intron 2 of 6) intron (NM_032227, intron 2 of 6) 23281 NM_032227 84187 Hs.496572 NM_017698 ENSG00000157600 TMEM164 bB360B22.3 transmembrane protein 164 protein-coding 24816 chr6 79233808 79233912 + 0 NA non-coding (NR_040671, exon 1 of 2) non-coding (NR_040671, exon 1 of 2) 186 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 24086 chr6 14271177 14271324 + 0 NA Intergenic Intergenic 14204 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 18139 chr20 47809789 47809927 + 0 NA Intergenic LTR16A2|LTR|ERVL -23242 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 24739 chr6 56844254 56844288 + 0 NA promoter-TSS (NM_183380) promoter-TSS (NM_183380) 285 NR_125866 101930010 Hs.650232 NR_125866 LOC101930010 - uncharacterized LOC101930010 ncRNA 20547 chr3 160449754 160449858 + 0 NA promoter-TSS (NM_173084) promoter-TSS (NM_173084) 32 NM_173084 286827 Hs.212957 NM_173084 ENSG00000213186 TRIM59 IFT80L|MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 23302 chr5 138331898 138332027 + 0 NA promoter-TSS (NM_001287582) promoter-TSS (NM_001287582) -85 NM_022809 995 Hs.656 NM_001790 ENSG00000158402 CDC25C CDC25|PPP1R60 cell division cycle 25C protein-coding 2450 chr1 204104664 204104671 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 31549 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 30528 chrX 16719370 16719507 + 0 NA promoter-TSS (NM_032796) promoter-TSS (NM_032796) -146 NR_033181 94056 Hs.744256 NM_032796 ENSG00000169895 SYAP1 PRO3113 synapse associated protein 1 protein-coding 1398 chr1 99808824 99808928 + 0 NA Intergenic Intergenic -41208 NM_000642 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 3986 chr10 80413695 80413875 + 0 NA promoter-TSS (NM_001243778) promoter-TSS (NM_001243778) -34 NM_001243778 84293 Hs.500333 NM_032333 ENSG00000122378 FAM213A C10orf58|PAMM family with sequence similarity 213 member A protein-coding 30160 chr9 127919430 127919571 + 0 NA Intergenic Intergenic -2474 NM_175040 27090 Hs.3972 NM_014403 ENSG00000136840 ST6GALNAC4 IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein-coding 19324 chr3 33440444 33440596 + 0 NA promoter-TSS (NM_001128160) promoter-TSS (NM_001128160) -115 NM_001128161 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 (LBP-1a) protein-coding 1870 chr1 157771808 157771939 + 0 NA intron (NM_001159488, intron 2 of 8) intron (NM_001159488, intron 2 of 8) 5259 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 14048 chr19 9309724 9309828 + 0 NA promoter-TSS (NM_198535) promoter-TSS (NM_198535) -62 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 10089 chr15 51381313 51381513 + 0 NA intron (NM_181789, intron 2 of 9) intron (NM_181789, intron 2 of 9) 4167 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 5214 chr11 44980047 44980190 + 0 NA Intergenic MIRb|SINE|MIR 6216 NR_026681 221122 Hs.551656 NR_026681 ENSG00000254654 LOC221122 - uncharacterized LOC221122 ncRNA 25933 chr7 27678093 27678239 + 0 NA Intergenic MER68|LTR|ERVL -15165 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 11325 chr16 50245469 50245496 + 0 NA Intergenic Intergenic -21058 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 22918 chr5 96243971 96244075 + 0 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 164885 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 833 chr1 47179207 47179364 + 0 NA promoter-TSS (NR_047498) promoter-TSS (NR_047498) 35 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 19894 chr3 112751697 112751796 + 0 NA Intergenic Intergenic -2427 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 11288 chr16 47143419 47143539 + 0 NA promoter-TSS (NR_110903) promoter-TSS (NR_110903) 546 NM_018092 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 31021 chrX 120469307 120469465 + 0 NA promoter-TSS (NM_001122606) promoter-TSS (NM_001122606) -37 NM_013995 3920 Hs.496684 NM_002294 ENSG00000005893 LAMP2 CD107b|LAMP-2|LAMPB|LGP110 lysosomal associated membrane protein 2 protein-coding 17751 chr20 21436214 21436318 + 0 NA Intergenic Intergenic -38857 NM_033176 644524 Hs.456662 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 2743 chr1 220690203 220690281 + 0 NA promoter-TSS (NM_024709) promoter-TSS (NM_024709) -44 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 4588 chr10 126377120 126377224 + 0 NA intron (NM_001288973, intron 1 of 22) MIR|SINE|MIR 11386 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 25497 chr6 169571223 169571253 + 0 NA intron (NM_001202550, intron 21 of 21) intron (NM_001202550, intron 21 of 21) 130825 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 18571 chr21 42974203 42974291 + 0 NA promoter-TSS (NM_001320694) promoter-TSS (NM_001320694) -263 NM_001286258 5316 Hs.431043 NM_004571 ENSG00000160199 PKNOX1 PREP1|pkonx1c PBX/knotted 1 homeobox 1 protein-coding 14886 chr1_KI270712v1_random 58348 58452 + 0 NA NA (TGGCTGGCT)n|Simple_repeat|Simple_repeat NA NA 3276 chr10 11270711 11270815 + 0 NA exon (NM_006561, exon 7 of 14) exon (NM_006561, exon 7 of 14) 73911 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 7892 chr12 131093408 131093512 + 0 NA intron (NM_001330497, intron 16 of 25) intron (NM_001330497, intron 16 of 25) -71551 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 29510 chr9 90546396 90546459 + 0 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 36319 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 3649 chr10 47406934 47406977 + 0 NA promoter-TSS (NR_134500) promoter-TSS (NR_134500) -210 NR_134500 107001062 Hs.576719 NR_134500 LOC107001062 - uncharacterized LOC107001062 ncRNA 26186 chr7 44999890 44999994 + 0 NA promoter-TSS (NM_001167934) promoter-TSS (NM_001167934) 196 NR_030770 83605 Hs.148272 NM_031443 ENSG00000136280 CCM2 C7orf22|OSM|PP10187 CCM2 scaffolding protein protein-coding 15600 chr2 58571338 58571442 + 0 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 50637 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 14852 chr19 57614149 57614253 + 0 NA promoter-TSS (NM_003435) promoter-TSS (NM_003435) -18 NM_003435 7693 Hs.469694 NM_003435 ENSG00000213762 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 2575 chr1 209808225 209808329 + 0 NA Intergenic Intergenic -2102 NM_006147 3664 Hs.591415 NM_006147 ENSG00000117595 IRF6 LPS|OFC6|PIT|PPS|PPS1|VWS|VWS1 interferon regulatory factor 6 protein-coding 4641 chr10 132903251 132903401 + 0 NA intron (NM_001200049, intron 22 of 57) intron (NM_001200049, intron 22 of 57) 39259 NM_001200049 54777 Hs.298038 NM_017609 ENSG00000171811 CFAP46 C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3 cilia and flagella associated protein 46 protein-coding 2204 chr1 183094135 183094196 + 0 NA intron (NM_002293, intron 1 of 27) L2a|LINE|L2 70705 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 10019 chr15 45198643 45198771 + 0 NA intron (NM_138356, intron 2 of 7) intron (NM_138356, intron 2 of 7) 2468 NM_138356 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 6494 chr12 6182409 6182410 + 0 NA Intergenic Intergenic -17298 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 7964 chr13 23599550 23599654 + 0 NA intron (NM_001204458, intron 3 of 9) MER4B|LTR|ERV1 20242 NM_001204458 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 22293 chr5 17330629 17330733 + 0 NA Intergenic Intergenic 56629 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 25896 chr7 25862323 25862395 + 0 NA Intergenic Intergenic 87627 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 22455 chr5 42887238 42887358 + 0 NA Intergenic Intergenic -75376 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 1357 chr1 95233984 95234088 + 0 NA promoter-TSS (NR_125948) promoter-TSS (NR_125948) -54 NR_125948 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 6439 chr12 1519413 1519517 + 0 NA Intergenic Intergenic 18974 NR_028415 100292680 Hs.391695 NR_028415 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 7602 chr12 107296881 107296935 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -21512 NM_001018072 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 24748 chr6 57222355 57222459 + 0 NA promoter-TSS (NM_016277) promoter-TSS (NM_016277) -93 NM_016277 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 16332 chr2 131682373 131682527 + 0 NA Intergenic CpG -40041 NM_013310 29798 Hs.635289 NM_013310 C2orf27A C2orf27|C2orf27B chromosome 2 open reading frame 27A protein-coding 10541 chr15 80709665 80709769 + 0 NA intron (NM_021214, intron 1 of 2) L2|LINE|L2 14406 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 49 chr1 3215367 3215471 + 0 NA intron (NM_199454, intron 2 of 16) intron (NM_199454, intron 2 of 16) 87444 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 4684 chr11 1572229 1572332 + 0 NA promoter-TSS (NR_021489) promoter-TSS (NR_021489) -360 NM_004420 1850 Hs.41688 NM_004420 ENSG00000184545 DUSP8 C11orf81|HB5|HVH-5|HVH8 dual specificity phosphatase 8 protein-coding 24131 chr6 18023027 18023101 + 0 NA Intergenic Intergenic -35441 NM_001243423 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 7786 chr12 121839476 121839605 + 0 NA TTS (NM_002150) TTS (NM_002150) 19323 NM_002150 3242 Hs.2899 NM_002150 ENSG00000158104 HPD 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD 4-hydroxyphenylpyruvate dioxygenase protein-coding 21132 chr4 3484751 3484872 + 0 NA 5' UTR (NM_001256896, exon 1 of 4) 5' UTR (NM_001256896, exon 1 of 4) 267 NM_001256896 285489 Hs.122110 NM_173660 ENSG00000175920 DOK7 C4orf25|CMS10|CMS1B docking protein 7 protein-coding 19882 chr3 112075300 112075386 + 0 NA exon (NM_001042575, exon 13 of 16) exon (NM_001042575, exon 13 of 16) -10992 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 17969 chr20 37526407 37526529 + 0 NA intron (NM_001167820, intron 1 of 2) intron (NM_001167820, intron 1 of 2) 1264 NM_001167821 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 bladder cancer associated protein protein-coding 20043 chr3 123606060 123606146 + 0 NA intron (NR_038266, intron 1 of 2) intron (NR_038266, intron 1 of 2) 14504 NM_053031 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 6228 chr11 121656078 121656229 + 0 NA Intergenic Intergenic 203950 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 19184 chr3 13850253 13850394 + 0 NA intron (NM_004625, intron 3 of 3) intron (NM_004625, intron 3 of 3) 29798 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A - Wnt family member 7A protein-coding 10117 chr15 52496840 52496944 + 0 NA intron (NM_000259, intron 1 of 40) LTR16A|LTR|ERVL 32158 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 2967 chr1 233295696 233295800 + 0 NA promoter-TSS (NM_014801) promoter-TSS (NM_014801) -35 NM_001328607 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex homolog 2 (Drosophila) protein-coding 8418 chr13 79767308 79767460 + 0 NA Intergenic MIR|SINE|MIR -37002 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 4860 chr11 13118284 13118342 + 0 NA Intergenic FordPrefect|DNA|hAT-Tip100 108890 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 25173 chr6 134035902 134036006 + 0 NA intron (NM_145176, intron 1 of 4) intron (NM_145176, intron 1 of 4) 16697 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 20805 chr3 183925122 183925270 + 0 NA intron (NM_001320032, intron 29 of 29) intron (NM_001320032, intron 29 of 29) 38396 NR_039650 100616127 NR_039650 ENSG00000263932 MIR4448 - microRNA 4448 ncRNA 17245 chr2 230219982 230220065 + 0 NA promoter-TSS (NM_004509) promoter-TSS (NM_004509) 89 NM_004510 3431 Hs.145150 NM_004509 ENSG00000135899 SP110 IFI41|IFI75|IPR1|VODI SP110 nuclear body protein protein-coding 16108 chr2 109470704 109470816 + 0 NA intron (NM_001099289, intron 8 of 9) intron (NM_001099289, intron 8 of 9) 142897 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPT10 - septin 10 protein-coding 23 chr1 1574871 1574949 + 0 NA promoter-TSS (NM_014188) promoter-TSS (NM_014188) -28 NM_014188 29101 Hs.30026 NM_014188 ENSG00000160075 SSU72 HSPC182|PNAS-120 SSU72 homolog, RNA polymerase II CTD phosphatase protein-coding 20080 chr3 126357456 126357560 + 0 NA promoter-TSS (NM_014079) promoter-TSS (NM_014079) -115 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 11787 chr16 85384932 85385121 + 0 NA Intergenic Intergenic -78701 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 16246 chr2 121699550 121699654 + 0 NA intron (NR_037857, intron 2 of 3) L2|LINE|L2 37325 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 30274 chr9 131423186 131423290 + 0 NA Intergenic Intergenic -6852 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 19159 chr3 11137080 11137106 + 0 NA promoter-TSS (NM_001098213) promoter-TSS (NM_001098213) 0 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 24214 chr6 26055116 26055208 + 0 NA TTS (NM_005319) TTS (NM_005319) 1309 NM_005319 3006 Hs.7644 NM_005319 ENSG00000187837 HIST1H1C H1.2|H1C|H1F2|H1s-1 histone cluster 1 H1 family member c protein-coding 10249 chr15 62929125 62929160 + 0 NA Intergenic Intergenic 105185 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 25135 chr6 128509002 128509151 + 0 NA intron (NM_001135648, intron 1 of 30) Tigger7|DNA|TcMar-Tigger 11598 NM_001291983 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type K protein-coding 11653 chr16 75378075 75378216 + 0 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) 55344 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 1678 chr1 150363985 150364123 + 0 NA promoter-TSS (NM_001297674) promoter-TSS (NM_001297674) -57 NM_015203 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 26180 chr7 44797030 44797074 + 0 NA intron (NM_021130, intron 1 of 4) CpG 416 NM_001300981 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 21424 chr4 69707968 69708029 + 0 NA Intergenic Intergenic 52714 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 8291 chr13 52011731 52011877 + 0 NA promoter-TSS (NM_000053) promoter-TSS (NM_000053) -310 NM_001330579 540 Hs.492280 NM_000053 ENSG00000123191 ATP7B PWD|WC1|WD|WND ATPase copper transporting beta protein-coding 26168 chr7 44308059 44308163 + 0 NA intron (NM_172084, intron 1 of 15) intron (NM_172084, intron 1 of 15) 17520 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB calcium/calmodulin dependent protein kinase II beta protein-coding 11135 chr16 23279779 23279923 + 0 NA Intergenic Intergenic -22419 NM_000336 6338 Hs.414614 NM_000336 ENSG00000168447 SCNN1B BESC1|ENaCb|ENaCbeta|SCNEB sodium channel epithelial 1 beta subunit protein-coding 30196 chr9 128724148 128724293 + 0 NA promoter-TSS (NR_046240) promoter-TSS (NR_046240) -91 NM_001318016 84885 Hs.133122 NM_032799 ENSG00000160446 ZDHHC12 DHHC-12|ZNF400 zinc finger DHHC-type containing 12 protein-coding 14674 chr19 49064157 49064306 + 0 NA promoter-TSS (NM_006179) promoter-TSS (NM_006179) -364 NM_006179 4909 Hs.266902 NM_006179 ENSG00000225950 NTF4 GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5 neurotrophin 4 protein-coding 8583 chr13 108972061 108972165 + 0 NA intron (NM_001198950, intron 20 of 34) AluJb|SINE|Alu 195190 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 30409 chrUn_GL000216v2 84913 85060 + 0 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 20372 chr3 149443021 149443138 + 0 NA Intergenic Intergenic -31502 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 15915 chr2 85616190 85616236 + 0 NA exon (NM_001256725, exon 1 of 14) exon (NM_001256725, exon 1 of 14) 121 NM_001256725 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 10109 chr15 52077033 52077137 + 0 NA Intergenic Intergenic 35690 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 27439 chr8 17495261 17495365 + 0 NA Intergenic Intergenic -1775 NM_001008539 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 22844 chr5 88141388 88141428 + 0 NA Intergenic CpG 127471 NM_001289008 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 4375 chr10 112950162 112950311 + 0 NA promoter-TSS (NM_001146274) promoter-TSS (NM_001146274) -14 NM_001198531 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 28608 chr8 126133542 126133646 + 0 NA Intergenic Intergenic -182397 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 16484 chr2 155879996 155880157 + 0 NA Intergenic L1PA7|LINE|L1 374855 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 2340 chr1 200131684 200131788 + 0 NA intron (NM_001276464, intron 6 of 6) intron (NM_001276464, intron 6 of 6) 88911 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 8079 chr13 32538787 32538901 + 0 NA promoter-TSS (NM_001278432) promoter-TSS (NM_001278432) 41 NM_033111 10443 Hs.507680 NM_014887 ENSG00000244754 N4BP2L2 92M18.3|CG005|CG016|PFAAP5 NEDD4 binding protein 2 like 2 protein-coding 19297 chr3 30475344 30475448 + 0 NA Intergenic Intergenic -131106 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 19152 chr3 10321108 10321257 + 0 NA promoter-TSS (NM_030673) promoter-TSS (NM_030673) 6 NM_001136026 6396 Hs.166924 NM_030673 ENSG00000157020 SEC13 D3S1231E|SEC13L1|SEC13R|npp-20 SEC13 homolog, nuclear pore and COPII coat complex component protein-coding 11226 chr16 30535817 30535921 + 0 NA promoter-TSS (NM_001305018) promoter-TSS (NM_001305018) -899 NM_001305019 65988 Hs.592032 NM_023931 ENSG00000169955 ZNF747 - zinc finger protein 747 protein-coding 24353 chr6 31158428 31158551 + 0 NA promoter-TSS (NM_001105563).2 promoter-TSS (NM_001105563).2 -35 NM_001318908 6941 Hs.584807 NM_007109 ENSG00000137310 TCF19 SC1|TCF-19 transcription factor 19 protein-coding 15754 chr2 69945525 69945629 + 0 NA Intergenic Intergenic 16688 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 9557 chr14 91286639 91286743 + 0 NA intron (NM_001080414, intron 25 of 29) intron (NM_001080414, intron 25 of 29) -32811 NM_003485 8111 Hs.8882 NM_003485 ENSG00000119714 GPR68 AI2A6|GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 4430 chr10 117005230 117005254 + 0 NA 5' UTR (NM_001127211, exon 1 of 17) 5' UTR (NM_001127211, exon 1 of 17) 335 NM_001127211 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 2449 chr1 204104439 204104543 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 31373 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 20827 chr3 184652112 184652290 + 0 NA Intergenic Intergenic 59847 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 - MAGE family member F1 protein-coding 4627 chr10 131948069 131948152 + 0 NA intron (NR_033191, intron 9 of 9) intron (NR_033191, intron 9 of 9) 33903 NM_004052 664 Hs.144873 NM_004052 ENSG00000176171 BNIP3 NIP3 BCL2 interacting protein 3 protein-coding 244 chr1 16925672 16925782 + 0 NA intron (NM_014675, intron 3 of 36) intron (NM_014675, intron 3 of 36) 3777 NM_014675 9696 Hs.309403 NM_014675 ENSG00000058453 CROCC ROLT|TAX1BP2 ciliary rootlet coiled-coil, rootletin protein-coding 17747 chr20 21125803 21125907 + 0 NA promoter-TSS (NM_001163022) promoter-TSS (NM_001163022) -128 NM_001163022 55857 Hs.187635 NM_018474 ENSG00000088970 KIZ C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69 kizuna centrosomal protein protein-coding 4107 chr10 95183697 95183817 + 0 NA Intergenic CpG -10443 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium-chain family member 6 protein-coding 7723 chr12 118271883 118271955 + 0 NA intron (NM_001346493, intron 1 of 22) intron (NM_001346493, intron 1 of 22) -81357 NM_001346496 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 9999 chr15 43800459 43800601 + 0 NA promoter-TSS (NM_001258031) promoter-TSS (NM_001258031) 109 NM_001199885 25764 Hs.730672 NM_016400 ENSG00000242028 HYPK C15orf63|HSPC136 huntingtin interacting protein K protein-coding 8744 chr14 23988825 23988932 + 0 NA promoter-TSS (NM_198083) promoter-TSS (NM_198083) 60 NM_198083 317749 Hs.743442 NM_198083 ENSG00000187630 DHRS4L2 SDR25C3 dehydrogenase/reductase 4 like 2 protein-coding 11380 chr16 55039629 55039733 + 0 NA Intergenic Intergenic 108482 NM_005853 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 26199 chr7 46220192 46220343 + 0 NA Intergenic Intergenic -298995 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 23074 chr5 117454890 117455011 + 0 NA intron (NR_046089, intron 2 of 5) L1PA17|LINE|L1 39438 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 21986 chr4 167117380 167117476 + 0 NA intron (NM_016950, intron 2 of 11) L1MCc|LINE|L1 116998 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 protein-coding 27660 chr8 32548145 32548249 + 0 NA promoter-TSS (NM_013960) promoter-TSS (NM_013960) -13 NM_001160007 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 23136 chr5 126106207 126106311 + 0 NA Intergenic Intergenic -73318 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 2811 chr1 224356784 224356938 + 0 NA promoter-TSS (NM_001277197) promoter-TSS (NM_001277197) 50 NM_001277197 29097 Hs.445890 NM_014184 ENSG00000143771 CNIH4 CNIH-4|HSPC163 cornichon family AMPA receptor auxiliary protein 4 protein-coding 6672 chr12 14886411 14886515 + 0 NA promoter-TSS (NM_001190839) promoter-TSS (NM_001190839) -401 NM_001190839 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 10431 chr15 73992197 73992351 + 0 NA promoter-TSS (NM_001256672) promoter-TSS (NM_001256672) 74 NM_001256673 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 4901 chr11 15208750 15208858 + 0 NA intron (NM_001278315, intron 6 of 12) intron (NM_001278315, intron 6 of 12) 59702 NM_001278313 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - inscuteable homolog (Drosophila) protein-coding 6348 chr11 129846529 129846633 + 0 NA intron (NM_001331210, intron 2 of 6) L2a|LINE|L2 30800 NM_001331211 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 1386 chr1 98739875 98740019 + 0 NA intron (NM_152238, intron 7 of 7) L2b|LINE|L2 78267 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 26473 chr7 77834743 77834819 + 0 NA intron (NM_001127358, intron 1 of 17) intron (NM_001127358, intron 1 of 17) -5349 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 1536 chr1 113388781 113388924 + 0 NA Intergenic LTR33|LTR|ERVL -2001 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 26778 chr7 105849490 105849594 + 0 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 27043 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 23583 chr5 154830036 154830140 + 0 NA TTS (NR_039667) TTS (NR_039667) 630 NR_039667 100616306 NR_039667 ENSG00000263361 MIR378H - microRNA 378h ncRNA 7851 chr12 124838417 124838449 + 0 NA intron (NM_005505, intron 1 of 12) intron (NM_005505, intron 1 of 12) 25540 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 23256 chr5 134648547 134648651 + 0 NA promoter-TSS (NM_001252231) promoter-TSS (NM_001252231) -186 NM_001252231 10802 Hs.595540 NM_021982 ENSG00000113615 SEC24A - SEC24 homolog A, COPII coat complex component protein-coding 452 chr1 27365857 27365961 + 0 NA intron (NM_004672, intron 1 of 28) intron (NM_004672, intron 1 of 28) 957 NM_004672 9064 Hs.194694 NM_004672 ENSG00000142733 MAP3K6 ASK2|MAPKKK6|MEKK6 mitogen-activated protein kinase kinase kinase 6 protein-coding 24277 chr6 28335517 28335671 + 0 NA intron (NM_001243242, intron 1 of 3) LTR25|LTR|ERV1 540 NM_001135216 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 295 chr1 19975011 19975125 + 0 NA TTS (NM_000300) TTS (NM_000300) 4591 NM_001161729 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 12056 chr17 7857159 7857263 + 0 NA promoter-TSS (NM_144607) promoter-TSS (NM_144607) -516 NM_144607 124637 Hs.27475 NM_144607 ENSG00000182224 CYB5D1 - cytochrome b5 domain containing 1 protein-coding 7051 chr12 53079453 53079506 + 0 NA promoter-TSS (NM_032840) promoter-TSS (NM_032840) -59 NM_032840 84926 Hs.343334 NM_032840 ENSG00000167778 SPRYD3 - SPRY domain containing 3 protein-coding 3956 chr10 78029522 78029626 + 0 NA promoter-TSS (NM_007055) promoter-TSS (NM_007055) -34 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|hRPC155 RNA polymerase III subunit A protein-coding 27414 chr8 12755133 12755237 + 0 NA exon (NM_001329976, exon 1 of 12) exon (NM_001329976, exon 1 of 12) 257 NM_001329976 91694 Hs.180178 NM_152271 ENSG00000154359 LONRF1 RNF191 LON peptidase N-terminal domain and ring finger 1 protein-coding 21245 chr4 23006790 23006894 + 0 NA Intergenic Intergenic 292753 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 7377 chr12 88298787 88298966 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 156580 NM_181783 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane and tetratricopeptide repeat containing 3 protein-coding 21160 chr4 8029917 8030021 + 0 NA intron (NM_032432, intron 10 of 15) intron (NM_032432, intron 10 of 15) -24588 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 541 chr1 32107943 32108065 + 0 NA promoter-TSS (NM_012316) promoter-TSS (NM_012316) -39 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 8660 chr14 20333277 20333305 + 0 NA promoter-TSS (NM_021178) promoter-TSS (NM_021178) 21 NM_021178 57820 Hs.107003 NM_021178 ENSG00000100814 CCNB1IP1 C14orf18|HEI10 cyclin B1 interacting protein 1 protein-coding 6873 chr12 39503615 39503719 + 0 NA Intergenic Intergenic -60277 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 18745 chr22 28316148 28316252 + 0 NA intron (NM_001145418, intron 2 of 22) MER61E|LTR|ERV1 -143669 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 19408 chr3 42160111 42160173 + 0 NA promoter-TSS (NM_014965) promoter-TSS (NM_014965) -27 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 MILT1|OIP106 trafficking kinesin protein 1 protein-coding 14679 chr19 49149493 49149597 + 0 NA intron (NR_103842, intron 26 of 28) CpG-14897 5879 NM_002152 3270 Hs.436885 NM_002152 ENSG00000130528 HRC - histidine rich calcium binding protein protein-coding 21539 chr4 85043972 85044076 + 0 NA Intergenic L1PA7|LINE|L1 77206 NR_015359 404201 Hs.720920 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 897 chr1 54200008 54200060 + 0 NA promoter-TSS (NM_001031672) promoter-TSS (NM_001031672) 39 NM_001031672 606495 Hs.591426 NM_001031672 ENSG00000215883 CYB5RL - cytochrome b5 reductase like protein-coding 26757 chr7 103637328 103637432 + 0 NA intron (NM_173054, intron 17 of 63) intron (NM_173054, intron 17 of 63) -191203 NM_206885 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 10672 chr15 89663129 89663233 + 0 NA Intergenic Intergenic -7730 NM_198525 374654 Hs.513134 NM_198525 ENSG00000166813 KIF7 ACLS|AGBK|HLS2|JBTS12|UNQ340 kinesin family member 7 protein-coding 14404 chr19 37719707 37719809 + 0 NA promoter-TSS (NM_032689) promoter-TSS (NM_032689) 32 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 3671 chr10 50375100 50375218 + 0 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -126549 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 3871 chr10 72315152 72315280 + 0 NA Intergenic Intergenic 39933 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 29364 chr9 81737938 81738072 + 0 NA intron (NR_109772, intron 1 of 3) MLT1H2|LTR|ERVL-MaLR 48292 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 20739 chr3 179347591 179347721 + 0 NA promoter-TSS (NM_033540) promoter-TSS (NM_033540) -36 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 7231 chr12 65170527 65170631 + 0 NA exon (NM_014319, exon 1 of 13) exon (NM_014319, exon 1 of 13) 1008 NM_001167614 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 9076 chr14 56118354 56118458 + 0 NA promoter-TSS (NM_021255) promoter-TSS (NM_021255) 31 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 2584 chr1 209900887 209900991 + 0 NA Intergenic LTR16|LTR|ERVL -37235 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 6473 chr12 4321012 4321147 + 0 NA promoter-TSS (NM_020375) promoter-TSS (NM_020375) -114 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 2722 chr1 219416769 219416889 + 0 NA Intergenic MER66C|LTR|ERV1 140495 NR_135822 102723886 Hs.525963 NR_135822 LOC102723886 - uncharacterized LOC102723886 ncRNA 17341 chr2 237227843 237227947 + 0 NA Intergenic LTR16E2|LTR|ERVL 142454 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 16426 chr2 145906507 145906611 + 0 NA Intergenic L1MDa|LINE|L1 -680498 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 9422 chr14 77033994 77034114 + 0 NA Intergenic Intergenic -5355 NM_024496 64207 Hs.179260 NM_024496 ENSG00000119669 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein like protein-coding 22493 chr5 50667842 50667891 + 0 NA intron (NM_001331028, intron 1 of 25) CpG 320 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 13602 chr18 54224678 54224782 + 0 NA promoter-TSS (NM_003927) promoter-TSS (NM_003927) 58 NM_003927 8932 Hs.25674 NM_003927 ENSG00000134046 MBD2 DMTase|NY-CO-41 methyl-CpG binding domain protein 2 protein-coding 8553 chr13 105969979 105970120 + 0 NA Intergenic MamTip2|DNA|hAT-Tip100 263219 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 416 chr1 26336705 26336764 + 0 NA intron (NM_001039775, intron 11 of 19) CpG-706 17396 NM_001039775 55057 Hs.128738 NM_017977 ENSG00000176092 AIM1L CRYBG2 absent in melanoma 1-like protein-coding 25011 chr6 110815447 110815600 + 0 NA promoter-TSS (NM_001300960) promoter-TSS (NM_001300960) 109 NM_001300963 23097 Hs.744895 NM_015076 ENSG00000155111 CDK19 CDC2L6|CDK11|bA346C16.3 cyclin dependent kinase 19 protein-coding 17919 chr20 35278049 35278183 + 0 NA promoter-TSS (NR_102705) promoter-TSS (NR_102705) 41 NR_102706 101410538 Hs.356273 NR_102705 MMP24-AS1 - MMP24 antisense RNA 1 ncRNA 13871 chr19 1747517 1747611 + 0 NA Intergenic Intergenic -6099 NM_001080488 390874 Hs.654347 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 2405 chr1 202184786 202184940 + 0 NA intron (NR_002930, intron 15 of 21) intron (NR_002930, intron 15 of 21) -9127 NM_001017403 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 28042 chr8 74281661 74281765 + 0 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 39648 NM_001317830 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 11937 chr17 3048931 3049026 + 0 NA Intergenic CpG 14629 NM_014566 8386 Hs.553508 NM_014566 ENSG00000262628 OR1D5 C17orf2|OR17-2|OR17-30|OR17-31|OR1D4 olfactory receptor family 1 subfamily D member 5 protein-coding 4710 chr11 3840951 3841055 + 0 NA promoter-TSS (NM_001665) promoter-TSS (NM_001665) -20 NM_001665 391 Hs.501728 NM_001665 ENSG00000177105 RHOG ARHG ras homolog family member G protein-coding 12977 chr17 74569712 74569741 + 0 NA Intergenic Intergenic -2383 NM_001324076 100130520 NM_001324073 LOC100130520 CD300H|CD300Hs CD300c molecule-like protein-coding 11838 chr16 88907960 88908064 + 0 NA intron (NM_005187, intron 1 of 11) intron (NM_005187, intron 1 of 11) 24497 NR_135194 101927793 Hs.690953 NR_135194 ENSG00000259881 LOC101927793 - uncharacterized LOC101927793 ncRNA 2232 chr1 184838778 184838892 + 0 NA intron (NM_052966, intron 5 of 13) X6A_LINE|LINE|CR1 -83928 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 8245 chr13 48233127 48233243 + 0 NA promoter-TSS (NM_021999) promoter-TSS (NM_021999) 47 NM_021999 9445 Hs.643683 NM_021999 ENSG00000136156 ITM2B ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2 integral membrane protein 2B protein-coding 10455 chr15 74938163 74938267 + 0 NA promoter-TSS (NM_004255) promoter-TSS (NM_004255) -61 NM_004255 9377 Hs.401903 NM_004255 ENSG00000178741 COX5A COX|COX-VA|VA cytochrome c oxidase subunit 5A protein-coding 3642 chr10 46106740 46106844 + 0 NA Intergenic CpG -2703 NR_126580 653268 Hs.447454 NM_001077685 AGAP7P AGAP-7|AGAP7|CTGLF4|bA109G10.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene pseudo 5600 chr11 69914668 69914772 + 0 NA Intergenic Intergenic -95296 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 6308 chr11 126647772 126647876 + 0 NA intron (NM_032531, intron 1 of 16) L2a|LINE|L2 -4954 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 21700 chr4 110631985 110632127 + 0 NA intron (NM_153427, intron 3 of 4) CpG -8958 NM_000325 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 19228 chr3 17742748 17742767 + 0 NA promoter-TSS (NR_135536) promoter-TSS (NR_135536) -187 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 18944 chr22 40951003 40951150 + 0 NA promoter-TSS (NM_014248) promoter-TSS (NM_014248) -271 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 17075 chr2 216006516 216006620 + 0 NA intron (NM_018000, intron 1 of 4) intron (NM_018000, intron 1 of 4) 7055 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 16456 chr2 150167701 150167805 + 0 NA Intergenic Intergenic 319942 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 14858 chr19 57819609 57819775 + 0 NA Intergenic CpG -4779 NM_024762 79818 Hs.560727 NM_024762 ENSG00000178935 ZNF552 - zinc finger protein 552 protein-coding 18101 chr20 45812436 45812580 + 0 NA promoter-TSS (NM_001281741) promoter-TSS (NM_001281741) -68 NR_104036 11065 Hs.93002 NM_007019 ENSG00000175063 UBE2C UBCH10|dJ447F3.2 ubiquitin conjugating enzyme E2 C protein-coding 22655 chr5 66896416 66896460 + 0 NA intron (NM_015183, intron 1 of 27) L1MD3|LINE|L1 -62432 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 16089 chr2 108533901 108534009 + 0 NA promoter-TSS (NM_001193483) promoter-TSS (NM_001193483) 264 NR_135290 644903 NM_032658 ENSG00000214184 GCC2-AS1 - GCC2 antisense RNA 1 ncRNA 2581 chr1 209873472 209873576 + 0 NA Intergenic Intergenic 45557 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 DIEXF C1orf107|DEF|DJ434O14.5|UTP25 digestive organ expansion factor homolog (zebrafish) protein-coding 6166 chr11 118692064 118692144 + 0 NA Intergenic MIR3|SINE|MIR -12432 NM_007180 11181 Hs.129712 NM_007180 ENSG00000118094 TREH TRE|TREA trehalase protein-coding 7355 chr12 85468157 85468261 + 0 NA Intergenic Intergenic 187951 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 42 chr1 2428529 2428645 + 0 NA Intergenic CpG -16016 NM_153818 5192 Hs.732228 NM_002617 ENSG00000157911 PEX10 NALD|PBD6A|PBD6B|RNF69 peroxisomal biogenesis factor 10 protein-coding 28326 chr8 101090903 101091067 + 0 NA Intergenic L2b|LINE|L2 38931 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 15490 chr2 46855689 46855793 + 0 NA intron (NR_024452, intron 1 of 2) intron (NR_024452, intron 1 of 2) 27877 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 10335 chr15 67174949 67175053 + 0 NA intron (NM_001145102, intron 5 of 8) intron (NM_001145102, intron 5 of 8) 8846 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 759 chr1 43358854 43358966 + 0 NA promoter-TSS (NM_001255) promoter-TSS (NM_001255) -45 NM_001255 991 Hs.524947 NM_001255 ENSG00000117399 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding 15027 chr2 12106411 12106515 + 0 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) -92667 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 13424 chr18 34698087 34698191 + 0 NA intron (NM_001128175, intron 2 of 11) intron (NM_001128175, intron 2 of 11) -12093 NM_032978 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 10212 chr15 59862801 59862905 + 0 NA Intergenic Intergenic -141369 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 25515 chr7 333152 333196 + 0 NA Intergenic CpG 43004 NM_001195127 100288524 Hs.702860 NM_001195127 WI2-2373I1.2 - forkhead box L1-like ncRNA 15882 chr2 84782066 84782170 + 0 NA intron (NM_001370, intron 65 of 76) Chap1_Mam|DNA|hAT-Charlie 99127 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 13857 chr19 1205629 1205774 + 0 NA promoter-TSS (NM_000455) promoter-TSS (NM_000455) -98 NM_000455 6794 Hs.515005 NM_000455 ENSG00000118046 STK11 LKB1|PJS|hLKB1 serine/threonine kinase 11 protein-coding 235 chr1 16613645 16613687 + 0 NA promoter-TSS (NM_017940) promoter-TSS (NM_017940) -61 NM_017940 55672 Hs.467587 NM_017940 ENSG00000219481 NBPF1 AB13|AB14|AB23|AD2|NBG|NBPF neuroblastoma breakpoint family member 1 protein-coding 2291 chr1 196003086 196003236 + 0 NA Intergenic MLT2A2|LTR|ERVL 579320 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 17931 chr20 35576139 35576243 + 0 NA non-coding (NR_119376, exon 35 of 43) non-coding (NR_119376, exon 35 of 43) 31371 NR_119376 80307 Hs.72222 NR_001442 ENSG00000088340 FER1L4 C20orf124 fer-1 like family member 4, pseudogene pseudo 1931 chr1 161166245 161166386 + 0 NA promoter-TSS (NM_001122764) promoter-TSS (NM_001122764) -76 NM_000309 5498 Hs.517373 NM_000309 ENSG00000143224 PPOX PPO|V290M|VP protoporphyrinogen oxidase protein-coding 2591 chr1 210328830 210328912 + 0 NA promoter-TSS (NM_001170588) promoter-TSS (NM_001170588) -35 NM_001170587 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 7733 chr12 119667807 119667968 + 0 NA promoter-TSS (NM_006253) promoter-TSS (NM_006253) -69 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 9817 chr15 31215483 31215634 + 0 NA promoter-TSS (NR_135834).2 promoter-TSS (NR_135834).2 -463 NR_135834 102725022 Hs.664541 NR_135834 LOC102725022 - uncharacterized LOC102725022 ncRNA 9190 chr14 63854039 63854143 + 0 NA intron (NM_182914, intron 1 of 115) intron (NM_182914, intron 1 of 115) 1126 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 20563 chr3 161291260 161291414 + 0 NA Intergenic Intergenic 70047 NM_001320227 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 18397 chr20 63272743 63272847 + 0 NA promoter-TSS (NM_001281482) promoter-TSS (NM_001281482) 10 NM_001281482 55738 Hs.25584 NM_018209 ENSG00000101199 ARFGAP1 ARF1GAP|HRIHFB2281 ADP ribosylation factor GTPase activating protein 1 protein-coding 10128 chr15 52790342 52790446 + 0 NA promoter-TSS (NM_004498) promoter-TSS (NM_004498) -382 NM_004498 3175 Hs.658573 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 21056 chr3 196568521 196568682 + 0 NA promoter-TSS (NM_001105573) promoter-TSS (NM_001105573) 73 NM_001345909 348793 Hs.385865 NM_182627 ENSG00000185798 WDR53 - WD repeat domain 53 protein-coding 4268 chr10 102854468 102854622 + 0 NA intron (NM_001136200, intron 1 of 4) CpG 335 NR_037644 100528007 Hs.720370 NR_037644 BORCS7-ASMT C10orf32-AS3MT|C10orf32-ASMT BORCS7-ASMT readthrough (NMD candidate) ncRNA 265 chr1 17554212 17554316 + 0 NA intron (NM_018125, intron 1 of 28) intron (NM_018125, intron 1 of 28) 14429 NR_137288 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 296 chr1 20037985 20038158 + 0 NA Intergenic L1PB1|LINE|L1 -32137 NM_000929 5322 Hs.319438 NM_000929 ENSG00000127472 PLA2G5 FRFB|GV-PLA2|PLA2-10|hVPLA(2) phospholipase A2 group V protein-coding 17442 chr20 1466822 1466926 + 0 NA non-coding (NR_038164, exon 1 of 8) non-coding (NR_038164, exon 1 of 8) 818 NM_016143 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 24097 chr6 15455921 15455948 + 0 NA intron (NM_004973, intron 4 of 17) intron (NM_004973, intron 4 of 17) 207079 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 8852 chr14 34982462 34982647 + 0 NA promoter-TSS (NM_001146282) promoter-TSS (NM_001146282) -344 NM_003136 6729 Hs.167535 NM_003136 ENSG00000100883 SRP54 - signal recognition particle 54 protein-coding 171 chr1 11909003 11909117 + 0 NA TTS (NR_002754) TTS (NR_002754) 906 NR_002754 26829 NR_002754 ENSG00000199347 RNU5E-1 RNU5E|U5E RNA, U5E small nuclear 1 snRNA 14330 chr19 29844390 29844494 + 0 NA Intergenic CpG 32448 NM_001322262 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 11216 chr16 30400687 30400791 + 0 NA TTS (NM_001214906) TTS (NM_001214906) 5320 NM_152652 197407 Hs.513501 NM_152652 ENSG00000180035 ZNF48 ZNF553 zinc finger protein 48 protein-coding 20429 chr3 152943897 152944001 + 0 NA Intergenic L2b|LINE|L2 109256 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1 purinergic receptor P2Y1 protein-coding 12566 chr17 44689718 44689834 + 0 NA promoter-TSS (NM_001099225) promoter-TSS (NM_001099225) 21 NM_001099225 124808 Hs.579115 NM_144609 ENSG00000180329 CCDC43 - coiled-coil domain containing 43 protein-coding 21720 chr4 114393836 114393940 + 0 NA Intergenic Intergenic -204514 NM_001128174 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 5435 chr11 64318114 64318118 + 0 NA promoter-TSS (NM_001286082) promoter-TSS (NM_001286082) 28 NM_181652 25824 Hs.502823 NM_012094 ENSG00000126432 PRDX5 ACR1|AOEB166|B166|HEL-S-55|PLP|PMP20|PRDX6|PRXV|SBBI10|prx-V peroxiredoxin 5 protein-coding 24144 chr6 18488658 18488762 + 0 NA Intergenic Intergenic -83074 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 25556 chr7 2451492 2451658 + 0 NA Intergenic Intergenic 13812 NR_108066 101927181 Hs.288853 NR_108066 ENSG00000136213 LOC101927181 - uncharacterized LOC101927181 ncRNA 16376 chr2 137202489 137202593 + 0 NA intron (NM_001316349, intron 7 of 27) MLT1D|LTR|ERVL-MaLR 436979 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 6838 chr12 32115776 32115930 + 0 NA intron (NM_001003398, intron 1 of 8) intron (NM_001003398, intron 1 of 8) 8602 NM_001714 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD BICD cargo adaptor 1 protein-coding 20820 chr3 184418029 184418060 + 0 NA intron (NM_001322103, intron 1 of 3) intron (NM_001322103, intron 1 of 3) 16507 NM_001322103 105374250 Hs.129464 NM_001322103 LINC02054 - long intergenic non-protein coding RNA 2054 protein-coding 30379 chr9 137129744 137129875 + 0 NA Intergenic CpG -9348 NM_001185090 2902 Hs.558334 NM_000832 ENSG00000176884 GRIN1 GluN1|MRD8|NMD-R1|NMDA1|NMDAR1|NR1 glutamate ionotropic receptor NMDA type subunit 1 protein-coding 14196 chr19 15125229 15125348 + 0 NA intron (NM_006844, intron 1 of 15) CpG 511 NM_006844 10994 Hs.78880 NM_006844 ENSG00000105135 ILVBL 209L8|AHAS|HACL1L|ILV2H ilvB acetolactate synthase like protein-coding 9294 chr14 69654232 69654324 + 0 NA intron (NM_014734, intron 1 of 5) L2b|LINE|L2 42685 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 2687 chr1 215570471 215570575 + 0 NA intron (NM_016121, intron 1 of 17) MIRb|SINE|MIR 3144 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 2012 chr1 167163012 167163116 + 0 NA Intergenic Charlie10b|DNA|hAT-Charlie 32741 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 6745 chr12 25195044 25195224 + 0 NA promoter-TSS (NM_001082972) promoter-TSS (NM_001082972) 28 NM_001082973 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility candidate 1 protein-coding 28819 chr8 143771729 143771848 + 0 NA Intergenic CpG -11280 NR_136279 105375800 Hs.632037 NR_136279 ENSG00000254973 LOC105375800 - chromosome 12 open reading frame 49 pseudogene pseudo 5111 chr11 33161509 33161722 + 0 NA promoter-TSS (NM_001326) promoter-TSS (NM_001326) -42 NR_034027 338739 Hs.423476 NR_034027 ENSG00000247151 CSTF3-AS1 - CSTF3 antisense RNA 1 (head to head) ncRNA 8132 chr13 38821865 38821969 + 0 NA intron (NM_207361, intron 6 of 23) intron (NM_207361, intron 6 of 23) 134881 NM_207361 341640 Hs.253994 NM_207361 ENSG00000150893 FREM2 - FRAS1 related extracellular matrix protein 2 protein-coding 582 chr1 33221197 33221318 + 0 NA Intergenic Intergenic -35316 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 25853 chr7 23246676 23246780 + 0 NA promoter-TSS (NM_002510) promoter-TSS (NM_002510) 31 NM_001005340 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB glycoprotein nmb protein-coding 1884 chr1 158819631 158819798 + 0 NA Intergenic Intergenic -11664 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 23259 chr5 134758643 134758784 + 0 NA promoter-TSS (NM_001300860) promoter-TSS (NM_001300860) -21 NR_125341 9879 Hs.406549 NM_014829 ENSG00000145833 DDX46 PRPF5|Prp5 DEAD-box helicase 46 protein-coding 28711 chr8 132775222 132775372 + 0 NA promoter-TSS (NM_198513) promoter-TSS (NM_198513) -61 NM_198513 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20-like 1 protein-coding 29404 chr9 84773156 84773310 + 0 NA intron (NM_001018064, intron 11 of 16) intron (NM_001018064, intron 11 of 16) 102856 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 11660 chr16 75556256 75556334 + 0 NA promoter-TSS (NM_001077416) promoter-TSS (NM_001077416) -9 NM_001077418 79583 Hs.156784 NM_001077416 ENSG00000205084 TMEM231 ALYE870|JBTS20|MKS11|PRO1886 transmembrane protein 231 protein-coding 29094 chr9 37485743 37485869 + 0 NA promoter-TSS (NM_001282766) promoter-TSS (NM_001282766) -129 NM_001282766 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 18730 chr22 27045388 27045492 + 0 NA Intergenic Intergenic 15078 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 4868 chr11 13271184 13271288 + 0 NA Intergenic L2b|LINE|L2 -6491 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 10722 chr15 91866995 91867099 + 0 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 12747 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 18855 chr22 36547051 36547155 + 0 NA Intergenic Intergenic -17873 NM_003753 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 24988 chr6 108685031 108685089 + 0 NA TTS (NM_001455) TTS (NM_001455) -66594 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 25704 chr7 13603715 13603816 + 0 NA Intergenic Intergenic 382749 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 9956 chr15 41284022 41284032 + 0 NA promoter-TSS (NR_026757) promoter-TSS (NR_026757) 24 NR_026757 729082 Hs.380164 NR_026757 OIP5-AS1 cyrano OIP5 antisense RNA 1 ncRNA 20982 chr3 192879828 192879982 + 0 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 38256 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 16820 chr2 190408214 190408358 + 0 NA promoter-TSS (NM_017694) promoter-TSS (NM_017694) -69 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 9874 chr15 36579555 36579682 + 0 NA promoter-TSS (NM_001290233) promoter-TSS (NM_001290233) 15 NM_001321761 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 15523 chr2 48420751 48420894 + 0 NA Intergenic Intergenic -19947 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 18110 chr20 45993569 45993726 + 0 NA Intergenic Intergenic -15261 NM_004994 4318 Hs.297413 NM_004994 ENSG00000100985 MMP9 CLG4B|GELB|MANDP2|MMP-9 matrix metallopeptidase 9 protein-coding 25262 chr6 143673862 143673906 + 0 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) -4081 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 27440 chr8 17598437 17598541 + 0 NA intron (NM_006207, intron 3 of 6) intron (NM_006207, intron 3 of 6) 22056 NM_006207 5157 Hs.458573 NM_006207 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet derived growth factor receptor like protein-coding 26402 chr7 73738987 73739083 + 0 NA promoter-TSS (NM_001145364) promoter-TSS (NM_001145364) -168 NM_001145364 83451 Hs.647045 NM_148912 ENSG00000106077 ABHD11 PP1226|WBSCR21 abhydrolase domain containing 11 protein-coding 10303 chr15 65869413 65869536 + 0 NA promoter-TSS (NM_001206836) promoter-TSS (NM_001206836) 15 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 29526 chr9 91198023 91198127 + 0 NA Intergenic Intergenic 79013 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 983 chr1 61338238 61338389 + 0 NA intron (NM_005595, intron 4 of 9) intron (NM_005595, intron 4 of 9) -84795 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 20556 chr3 160784923 160785027 + 0 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) 28771 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 23007 chr5 110916520 110916624 + 0 NA Intergenic Intergenic -153508 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 12231 chr17 26603835 26603989 + 0 NA Intergenic ALR/Alpha|Satellite|centr 485329 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 4482 chr10 119667854 119667982 + 0 NA intron (NM_004281, intron 1 of 3) intron (NM_004281, intron 1 of 3) 16548 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 30323 chr9 133459909 133460062 + 0 NA promoter-TSS (NM_001242370) promoter-TSS (NM_001242370) 20 NM_001242369 11094 Hs.62003 NM_017586 ENSG00000160325 CACFD1 C9orf7|D9S2135|FLOWER calcium channel flower domain containing 1 protein-coding 29587 chr9 94554419 94554520 + 0 NA promoter-TSS (NR_121566) promoter-TSS (NR_121566) -576 NR_121569 101928099 Hs.674409 NR_121566 ENSG00000231806 PCAT7 PCAN-R2 prostate cancer associated transcript 7 (non-protein coding) ncRNA 27837 chr8 53529466 53529613 + 0 NA Intergenic Intergenic -277842 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 12574 chr17 45124122 45124226 + 0 NA intron (NM_133373, intron 1 of 14) intron (NM_133373, intron 1 of 14) 8359 NM_133373 113026 Hs.380094 NM_133373 ENSG00000161714 PLCD3 PLC-delta-3 phospholipase C delta 3 protein-coding 7251 chr12 71160691 71160841 + 0 NA Intergenic MIR3|SINE|MIR -2767 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 25070 chr6 118934482 118934685 + 0 NA intron (NM_153255, intron 1 of 6) CpG 579 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 20715 chr3 177597087 177597191 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 155218 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 11082 chr16 19113816 19113882 + 0 NA promoter-TSS (NM_001034841) promoter-TSS (NM_001034841) -83 NM_001034841 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein like 2 protein-coding 8442 chr13 91348789 91348886 + 0 NA intron (NR_027350, intron 1 of 1) CpG 1017 NR_027349 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 25670 chr7 9552608 9552712 + 0 NA Intergenic AluSq2|SINE|Alu -81610 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian clock 3 pseudogene pseudo 1980 chr1 164794506 164794584 + 0 NA intron (NM_001204963, intron 3 of 8) intron (NM_001204963, intron 3 of 8) -19904 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 27630 chr8 29459675 29459826 + 0 NA Intergenic Intergenic -109000 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 4004 chr10 84328437 84328541 + 0 NA promoter-TSS (NM_001284241) promoter-TSS (NM_001284241) -100 NM_001284240 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 20231 chr3 137171926 137172052 + 0 NA Intergenic Intergenic 214124 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 22967 chr5 104911019 104911101 + 0 NA Intergenic LTR16|LTR|ERVL -188414 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 5024 chr11 25211998 25212053 + 0 NA Intergenic L1PBa|LINE|L1 715055 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 8538 chr13 103883238 103883413 + 0 NA Intergenic Intergenic 458125 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 677 chr1 39192228 39192374 + 0 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 108134 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 28369 chr8 103445629 103445780 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -30369 NM_030780 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 17962 chr20 37289572 37289712 + 0 NA promoter-TSS (NM_001003897) promoter-TSS (NM_001003897) -6 NM_001003897 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 10228 chr15 60674115 60674219 + 0 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -7402 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 16712 chr2 177213274 177213314 + 0 NA TTS (NR_049831).2 TTS (NR_049831).2 568 NR_039646 100616394 NR_039646 ENSG00000170144 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 13008 chr17 75516446 75516550 + 0 NA promoter-TSS (NM_020753) promoter-TSS (NM_020753) -30 NM_207346 283989 Hs.378501 NM_207346 ENSG00000182173 TSEN54 PCH2A|PCH4|PCH5|SEN54L|sen54 tRNA splicing endonuclease subunit 54 protein-coding 17345 chr2 237489555 237489715 + 0 NA intron (NM_001281474, intron 2 of 13) intron (NM_001281474, intron 2 of 13) 2416 NM_001281473 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 17192 chr2 225101117 225101221 + 0 NA Intergenic Intergenic -58556 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 14264 chr19 18328533 18328663 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -5407 NM_001252129 25804 Hs.515255 NM_012321 ENSG00000130520 LSM4 GRP|YER112W LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 7622 chr12 108857702 108857806 + 0 NA promoter-TSS (NM_018984) promoter-TSS (NM_018984) -171 NM_018984 54434 Hs.199763 NM_018984 ENSG00000084112 SSH1 SSH1L slingshot protein phosphatase 1 protein-coding 27949 chr8 64818860 64818964 + 0 NA Intergenic Intergenic -20121 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 24291 chr6 28941052 28941156 + 0 NA Intergenic tRNA-Leu-TTG|tRNA|tRNA -2680 NR_103538 729583 Hs.453549 NR_103538 LINC01556 C6orf100|dJ25J6.5 long intergenic non-protein coding RNA 1556 ncRNA 21313 chr4 41612000 41612104 + 0 NA promoter-TSS (NM_001330674) promoter-TSS (NM_001330674) -657 NM_001112719 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 5062 chr11 28620313 28620417 + 0 NA Intergenic L2b|LINE|L2 -142817 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 28182 chr8 91180470 91180530 + 0 NA intron (NM_001129890, intron 5 of 7) MLT1F1|LTR|ERVL-MaLR -24985 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 24142 chr6 18387338 18387503 + 0 NA promoter-TSS (NM_182757) promoter-TSS (NM_182757) 70 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 20999 chr3 193782398 193782553 + 0 NA Intergenic Intergenic -155143 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 28617 chr8 126558357 126558498 + 0 NA promoter-TSS (NM_174911) promoter-TSS (NM_174911) 39 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 22962 chr5 103444492 103444596 + 0 NA Intergenic Intergenic 97441 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 19416 chr3 42600558 42600686 + 0 NA promoter-TSS (NM_005385) promoter-TSS (NM_005385) -33 NM_005385 4820 Hs.529509 NM_005385 ENSG00000114857 NKTR p104 natural killer cell triggering receptor protein-coding 14755 chr19 52735019 52735123 + 0 NA promoter-TSS (NM_001161501) promoter-TSS (NM_001161501) -17 NM_001161499 81856 Hs.143951 NM_030972 ENSG00000213020 ZNF611 - zinc finger protein 611 protein-coding 5832 chr11 91749308 91749491 + 0 NA Intergenic LTR8B|LTR|ERV1 -602697 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 11614 chr16 73055154 73055330 + 0 NA intron (NM_001164766, intron 1 of 8) intron (NM_001164766, intron 1 of 8) 3393 NM_001164766 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 30870 chrX 87525887 87525991 + 0 NA intron (NM_019117, intron 1 of 10) intron (NM_019117, intron 1 of 10) 8227 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 30522 chrX 15675684 15675735 + 0 NA non-coding (NR_026551, exon 2 of 5) non-coding (NR_026551, exon 2 of 5) 793 NR_026551 340591 Hs.732244 NR_026551 ENSG00000186312 CA5BP1 CA5BL|CA5BP|PRO2325 carbonic anhydrase 5B pseudogene 1 pseudo 30352 chr9 136118861 136118918 + 0 NA promoter-TSS (NM_001256526) promoter-TSS (NM_001256526) -4 NM_152833 90120 Hs.287411 NM_152833 ENSG00000238227 C9orf69 - chromosome 9 open reading frame 69 protein-coding 21187 chr4 13701932 13702036 + 0 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 46805 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 8788 chr14 30622198 30622319 + 0 NA promoter-TSS (NM_001283031) promoter-TSS (NM_001283031) 4 NM_001283032 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 29475 chr9 88076656 88076760 + 0 NA intron (NR_135138, intron 1 of 1) CpG 1192 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 23309 chr5 138543165 138543316 + 0 NA promoter-TSS (NM_004730) promoter-TSS (NM_004730) 60 NM_001291975 2107 Hs.483494 NM_004730 ENSG00000120705 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 9746 chr14 104972329 104972468 + 0 NA intron (NM_138420, intron 1 of 6) intron (NM_138420, intron 1 of 6) 5959 NM_138420 113146 Hs.441783 NM_138420 ENSG00000185567 AHNAK2 C14orf78 AHNAK nucleoprotein 2 protein-coding 12027 chr17 7252467 7252553 + 0 NA promoter-TSS (NM_015343) promoter-TSS (NM_015343) 309 NM_015362 23587 Hs.417029 NM_015362 ENSG00000170291 ELP5 C17orf81|DERP6|HSPC002|MST071|MSTP071 elongator acetyltransferase complex subunit 5 protein-coding 23602 chr5 157743473 157743577 + 0 NA promoter-TSS (NM_173491) promoter-TSS (NM_173491) -170 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 79 chr1 6343645 6343749 + 0 NA intron (NM_007274, intron 2 of 8) intron (NM_007274, intron 2 of 8) 15247 NM_181866 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 10316 chr15 66765995 66766017 + 0 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 63670 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 3845 chr10 70816510 70816614 + 0 NA intron (NM_003901, intron 1 of 14) intron (NM_003901, intron 1 of 14) 614 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 19688 chr3 86029668 86029772 + 0 NA intron (NM_153184, intron 8 of 9) intron (NM_153184, intron 8 of 9) -201670 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 3295 chr10 12720409 12720603 + 0 NA intron (NM_153498, intron 3 of 10) MamGypsy2-I|LTR|Gypsy 4847 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 19904 chr3 113051413 113051517 + 0 NA Intergenic Intergenic -31732 NM_001319111 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 14248 chr19 17747538 17747642 + 0 NA promoter-TSS (NM_001161357) promoter-TSS (NM_001161357) -128 NM_001161357 23149 Hs.96485 NM_015122 ENSG00000130475 FCHO1 - FCH domain only 1 protein-coding 19477 chr3 48663741 48663845 + 0 NA promoter-TSS (NM_001407) promoter-TSS (NM_001407) 25 NR_111921 102724368 Hs.663571 NR_111921 ENSG00000228350 CELSR3-AS1 - CELSR3 antisense RNA 1 (head to head) ncRNA 28385 chr8 104955975 104956066 + 0 NA Intergenic LTR16A1|LTR|ERVL -362899 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 6606 chr12 11730314 11730432 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 80519 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 16054 chr2 102541005 102541144 + 0 NA Intergenic Intergenic 67771 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 3865 chr10 72082191 72082335 + 0 NA intron (NM_001244950, intron 1 of 10) intron (NM_001244950, intron 1 of 10) 6510 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 protein-coding 9261 chr14 68137859 68138012 + 0 NA intron (NM_002877, intron 7 of 10) Eulor6D|DNA?|DNA? 314343 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13330 chr18 23827830 23827994 + 0 NA intron (NM_001127717, intron 23 of 73) intron (NM_001127717, intron 23 of 73) -45108 NM_001127718 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 1034 chr1 65002618 65002680 + 0 NA promoter-TSS (NR_119383) promoter-TSS (NR_119383) -173 NR_119383 101927084 Hs.734218 NR_119383 ENSG00000226891 LINC01359 - long intergenic non-protein coding RNA 1359 ncRNA 3679 chr10 51462490 51462620 + 0 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 162982 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 28347 chr8 102617003 102617133 + 0 NA Intergenic MER58A|DNA|hAT-Charlie 36896 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 16076 chr2 105856119 105856264 + 0 NA intron (NM_001004722, intron 3 of 3) intron (NM_001004722, intron 3 of 3) 4443 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 15171 chr2 23940534 23940579 + 0 NA promoter-TSS (NM_181713) promoter-TSS (NM_181713) 50 NM_181713 165324 Hs.591576 NM_181713 ENSG00000173960 UBXN2A UBXD4 UBX domain protein 2A protein-coding 13500 chr18 45967311 45967469 + 0 NA promoter-TSS (NM_020964) promoter-TSS (NM_020964) -51 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 30370 chr9 136882654 136882758 + 0 NA Intergenic Intergenic -3807 NM_021138 7186 Hs.522506 NM_021138 ENSG00000127191 TRAF2 MGC:45012|TRAP|TRAP3 TNF receptor associated factor 2 protein-coding 3145 chr1 247078765 247078890 + 0 NA promoter-TSS (NM_001204220) promoter-TSS (NM_001204220) -14 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 24610 chr6 44201305 44201409 + 0 NA Intergenic Intergenic -15582 NM_001315494 101929726 Hs.438979 NM_001315494 ENSG00000262179 LOC101929726 - uncharacterized LOC101929726 protein-coding 11058 chr16 15650048 15650190 + 0 NA promoter-TSS (NM_017668) promoter-TSS (NM_017668) -107 NM_017668 54820 Hs.655378 NM_017668 ENSG00000072864 NDE1 HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1 nudE neurodevelopment protein 1 protein-coding 920 chr1 55421419 55421483 + 0 NA Intergenic Intergenic 195810 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 23177 chr5 130289336 130289474 + 0 NA Intergenic Intergenic 384575 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 428 chr1 26677619 26677724 + 0 NA Intergenic Intergenic 16460 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 2305 chr1 197783699 197783756 + 0 NA Intergenic Intergenic -8234 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 3545 chr10 32958342 32958466 + 0 NA promoter-TSS (NM_133376) promoter-TSS (NM_133376) -39 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 7576 chr12 105418328 105418520 + 0 NA Intergenic Intergenic 87788 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 26765 chr7 104945149 104945294 + 0 NA Intergenic Intergenic -18576 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 13198 chr18 110343 110496 + 0 NA intron (NR_033770, intron 1 of 4) BSR/Beta|Satellite|Satellite 1354 NR_033770 727758 Hs.585843 NR_033770 ENSG00000263006 ROCK1P1 - Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudo 8562 chr13 106319207 106319284 + 0 NA Intergenic MER63A|DNA|hAT-Blackjack -57318 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 21284 chr4 36717042 36717046 + 0 NA Intergenic HERVL-int|LTR|ERVL -284735 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LOC100508631 - uncharacterized LOC100508631 ncRNA 20845 chr3 185498970 185499122 + 0 NA promoter-TSS (NM_080652) promoter-TSS (NM_080652) 11 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 25144 chr6 129501524 129501662 + 0 NA intron (NM_001079823, intron 57 of 63) intron (NM_001079823, intron 57 of 63) 208632 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 9843 chr15 33244050 33244154 + 0 NA intron (NR_046005, intron 5 of 8) intron (NR_046005, intron 5 of 8) 3453 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 21068 chr3 197310016 197310211 + 0 NA Intergenic Intergenic -10841 NM_001290983 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs large MAGUK scaffold protein 1 protein-coding 26468 chr7 77536821 77536979 + 0 NA promoter-TSS (NM_002835) promoter-TSS (NM_002835) -556 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase, non-receptor type 12 protein-coding 5336 chr11 61161663 61161843 + 0 NA promoter-TSS (NM_017966) promoter-TSS (NM_017966) -309 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C, ESCRT-I subunit protein-coding 1275 chr1 89605951 89606055 + 0 NA Intergenic L2c|LINE|L2 26891 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 FLJ27354 - uncharacterized LOC400761 ncRNA 15924 chr2 86337476 86337580 + 0 NA 5' UTR (NM_022912, exon 1 of 7) 5' UTR (NM_022912, exon 1 of 7) 126 NM_022912 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 6326 chr11 128583020 128583124 + 0 NA intron (NM_001143820, intron 1 of 9) MER5A1|DNA|hAT-Charlie 4486 NM_001143820 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 13317 chr18 23115768 23115872 + 0 NA Intergenic L1MB3|LINE|L1 -18744 NM_001256438 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 12795 chr17 60078922 60079026 + 0 NA promoter-TSS (NR_135648) promoter-TSS (NR_135648) -43 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 4941 chr11 17207896 17208054 + 0 NA promoter-TSS (NM_001321378) promoter-TSS (NM_001321378) 21 NM_001321378 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 14533 chr19 44777843 44777959 + 0 NA promoter-TSS (NM_001130852) promoter-TSS (NM_001130852) 32 NM_012116 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 12693 chr17 51120981 51121045 + 0 NA promoter-TSS (NM_001130527) promoter-TSS (NM_001130527) -148 NM_003971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 27282 chr7 157046833 157046937 + 0 NA Intergenic Intergenic 36028 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 10802 chr15 99733427 99733581 + 0 NA promoter-TSS (NM_001284418) promoter-TSS (NM_001284418) -60 NM_001284420 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 16042 chr2 101630321 101630425 + 0 NA Intergenic Intergenic -67330 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 24409 chr6 33276937 33277072 + 0 NA promoter-TSS (NM_003782).4 promoter-TSS (NM_003782).4 -136 NM_003782 8705 Hs.534375 NM_003782 ENSG00000235863 B3GALT4 BETA3GALT4|GALT2|GALT4 beta-1,3-galactosyltransferase 4 protein-coding 23691 chr5 169696153 169696262 + 0 NA intron (NM_004946, intron 10 of 51) intron (NM_004946, intron 10 of 51) 58960 NM_004946 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 12970 chr17 74295909 74296061 + 0 NA intron (NM_023036, intron 6 of 13) L1M4|LINE|L1 21738 NM_001172810 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 10324 chr15 67048768 67049006 + 0 NA intron (NR_135686, intron 2 of 5) intron (NR_135686, intron 2 of 5) 15295 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 30173 chr9 128177501 128177625 + 0 NA intron (NM_001257976, intron 9 of 15) intron (NM_001257976, intron 9 of 15) 14026 NM_001131018 25792 Hs.212395 NM_012127 ENSG00000148337 CIZ1 LSFR1|NP94|ZNF356 CDKN1A interacting zinc finger protein 1 protein-coding 19758 chr3 100260748 100260920 + 0 NA promoter-TSS (NM_018309) promoter-TSS (NM_018309) 17 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1 TBC1 domain family member 23 protein-coding 2484 chr1 205504442 205504546 + 0 NA promoter-TSS (NM_002596) promoter-TSS (NM_002596) -62 NM_212503 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 8159 chr13 40994144 40994301 + 0 NA intron (NM_172373, intron 1 of 8) intron (NM_172373, intron 1 of 8) -11940 NM_001145353 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 - E74 like ETS transcription factor 1 protein-coding 31008 chrX 119565424 119565528 + 0 NA promoter-TSS (NM_001170570) promoter-TSS (NM_001170570) -42 NM_022101 63932 Hs.248572 NM_022101 ENSG00000018610 CXorf56 - chromosome X open reading frame 56 protein-coding 13307 chr18 22466673 22466883 + 0 NA Intergenic MIR3|SINE|MIR -48863 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 29793 chr9 108057489 108057645 + 0 NA Intergenic MER58A|DNA|hAT-Charlie -567847 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 24871 chr6 84739923 84740033 + 0 NA intron (NM_001080508, intron 6 of 7) intron (NM_001080508, intron 6 of 7) 24258 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 2659 chr1 214103032 214103152 + 0 NA Intergenic Intergenic 114591 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 8044 chr13 29918931 29919077 + 0 NA non-coding (NR_047501, exon 2 of 2) non-coding (NR_047501, exon 2 of 2) 7647 NR_047501 100861573 Hs.585619 NR_047501 ENSG00000224405 LINC00572 - long intergenic non-protein coding RNA 572 ncRNA 30407 chrUn_GL000216v2 38007 38111 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 25468 chr6 166342541 166342673 + 0 NA promoter-TSS (NM_145169) promoter-TSS (NM_145169) -1 NM_145169 113402 Hs.487143 NM_145169 ENSG00000198818 SFT2D1 C6orf83|pRGR1 SFT2 domain containing 1 protein-coding 10627 chr15 86432986 86433081 + 0 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -116065 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 7017 chr12 52069599 52069710 + 0 NA promoter-TSS (NM_001098673) promoter-TSS (NM_001098673) -320 NM_001098673 60673 Hs.9911 NM_021934 ENSG00000123395 ATG101 C12orf44 autophagy related 101 protein-coding 513 chr1 31065827 31065931 + 0 NA promoter-TSS (NM_001020658) promoter-TSS (NM_001020658) -162 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1 pumilio RNA binding family member 1 protein-coding 16095 chr2 108636482 108636586 + 0 NA intron (NM_001193484, intron 1 of 9) LTR41|LTR|ERVL 15288 NM_001193484 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 50 chr1 3313194 3313362 + 0 NA intron (NM_199454, intron 3 of 16) intron (NM_199454, intron 3 of 16) -141305 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 5903 chr11 95245213 95245317 + 0 NA Intergenic Intergenic -12724 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 28872 chr9 1094883 1094987 + 0 NA Intergenic MIRc|SINE|MIR 44315 NM_181872 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 22321 chr5 21236987 21237091 + 0 NA Intergenic Intergenic -222441 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - glucuronidase, beta pseudogene 1 pseudo 17733 chr20 20017248 20017381 + 0 NA promoter-TSS (NM_016100) promoter-TSS (NM_016100) 24 NM_016100 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 17358 chr2 238060685 238060845 + 0 NA promoter-TSS (NM_016510) promoter-TSS (NM_016510) -159 NM_016510 51540 Hs.731909 NM_016510 ENSG00000132330 SCLY SCL|hSCL selenocysteine lyase protein-coding 8629 chr13 111423538 111423679 + 0 NA Intergenic Intergenic 102964 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 2633 chr1 212470077 212470156 + 0 NA Intergenic Intergenic 37229 NM_013349 29937 Hs.461787 NM_013349 ENSG00000117691 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 24149 chr6 19334120 19334224 + 0 NA Intergenic Intergenic -115649 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 21227 chr4 21451219 21451240 + 0 NA intron (NM_147182, intron 2 of 8) MamGypsy2-I|LTR|Gypsy 13529 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 30915 chrX 105552550 105552654 + 0 NA intron (NM_017416, intron 6 of 10) MLT1J1|LTR|ERVL-MaLR -269941 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 20188 chr3 134201340 134201446 + 0 NA intron (NM_001005861, intron 6 of 14) intron (NM_001005861, intron 6 of 14) 49351 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor-like tyrosine kinase protein-coding 17776 chr20 23156213 23156267 + 0 NA Intergenic Intergenic -23604 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 16966 chr2 205885674 205885778 + 0 NA Intergenic Intergenic 200456 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 15680 chr2 65366685 65366812 + 0 NA promoter-TSS (NM_001128210) promoter-TSS (NM_001128210) 49 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 10773 chr15 96264468 96264572 + 0 NA intron (NR_125738, intron 2 of 4) MER5A|DNA|hAT-Charlie -61408 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 797 chr1 45329580 45329648 + 0 NA TTS (NM_032756) TTS (NM_032756) 2741 NM_032756 84842 Hs.162717 NM_032756 ENSG00000186603 HPDL 4-HPPD-L|GLOXD1 4-hydroxyphenylpyruvate dioxygenase like protein-coding 7246 chr12 68584905 68585047 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -25863 NM_001251922 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 22496 chr5 51226477 51226581 + 0 NA Intergenic Intergenic -156595 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 17727 chr20 19928519 19928652 + 0 NA intron (NM_018993, intron 1 of 10) intron (NM_018993, intron 1 of 10) 39019 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 5570 chr11 67674690 67674820 + 0 NA promoter-TSS (NM_000695) promoter-TSS (NM_000695) -124 NM_000695 222 Hs.87539 NM_000695 ENSG00000132746 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family member B2 protein-coding 27539 chr8 23457739 23457843 + 0 NA promoter-TSS (NM_001128930) promoter-TSS (NM_001128930) -60 NM_001128930 9583 Hs.444389 NM_004901 ENSG00000197217 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 4318 chr10 106136327 106136431 + 0 NA Intergenic MSTB2|LTR|ERVL-MaLR -3786 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LOC105378470 - uncharacterized LOC105378470 ncRNA 9150 chr14 61472347 61472513 + 0 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 97764 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 5207 chr11 44564728 44564863 + 0 NA promoter-TSS (NM_001024844) promoter-TSS (NM_001024844) -796 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 7645 chr12 110304218 110304417 + 0 NA intron (NM_170665, intron 5 of 19) L1MB7|LINE|L1 23090 NM_170665 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 27821 chr8 52764420 52764579 + 0 NA Intergenic LTR57-int|LTR|ERVL -50033 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 22986 chr5 107672732 107672734 + 0 NA Intergenic Intergenic -1838 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 20250 chr3 138834972 138835118 + 0 NA Intergenic CpG -75686 NM_006219 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 645 chr1 37595929 37596078 + 0 NA promoter-TSS (NM_001323623) promoter-TSS (NM_001323623) -18 NM_013285 29889 Hs.75528 NM_013285 ENSG00000134697 GNL2 HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2 G protein nucleolar 2 protein-coding 21220 chr4 19776117 19776221 + 0 NA Intergenic Intergenic -475736 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 18708 chr22 24966309 24966492 + 0 NA Intergenic Intergenic -27053 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 20797 chr3 183295527 183295631 + 0 NA intron (NM_015078, intron 12 of 29) intron (NM_015078, intron 12 of 29) 42335 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 11913 chr17 2303875 2303926 + 0 NA promoter-TSS (NM_021947) promoter-TSS (NM_021947) -43 NM_021947 63826 Hs.461954 NM_021947 ENSG00000167720 SRR ILV1|ISO1 serine racemase protein-coding 10704 chr15 90412966 90412975 + 0 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 24729 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 29940 chr9 114889921 114890025 + 0 NA Intergenic L1M1|LINE|L1 40622 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 29818 chr9 109023068 109023105 + 0 NA intron (NM_032012, intron 17 of 17) intron (NM_032012, intron 17 of 17) -9492 NM_003798 8727 Hs.58488 NM_003798 ENSG00000119326 CTNNAL1 ACRP|CLLP|alpha-CATU catenin alpha like 1 protein-coding 14312 chr19 21329341 21329447 + 0 NA promoter-TSS (NM_001297561) promoter-TSS (NM_001297561) 16 NM_021269 7562 Hs.466296 NM_021269 ENSG00000182141 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 31192 chrX 154542124 154542147 + 0 NA promoter-TSS (NM_001099856) promoter-TSS (NM_001099856) -105 NM_001321396 8517 Hs.43505 NM_003639 ENSG00000269335 IKBKG AMCBX1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|ZC2HC9 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma protein-coding 2087 chr1 174795841 174795945 + 0 NA intron (NM_014857, intron 18 of 20) MER34A1|LTR|ERV1 -4004 NM_001330989 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 30421 chrUn_KI270435v1 92029 92154 + 0 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 27085 chr7 138564542 138564605 + 0 NA intron (NM_015905, intron 9 of 18) HERV3-int|LTR|ERV1 99651 NM_001331192 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 10900 chr16 2846870 2846974 + 0 NA Intergenic MER87|LTR|ERV1 -4171 NR_026864 124221 Hs.434388 NM_178453 ENSG00000172460 PRSS30P Disp|TMPRSS8|TMPRSS8P protease, serine, 30 pseudogene pseudo 8332 chr13 67119818 67119922 + 0 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 110466 NM_001318373 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 5106 chr11 32894317 32894421 + 0 NA intron (NM_001076786, intron 1 of 12) intron (NM_001076786, intron 1 of 12) 1191 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 26797 chr7 107328141 107328245 + 0 NA intron (NM_181733, intron 10 of 20) Tigger3a|DNA|TcMar-Tigger -141864 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 25701 chr7 12951633 12951737 + 0 NA Intergenic Intergenic 264399 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 27508 chr8 22367242 22367326 + 0 NA promoter-TSS (NM_001128431) promoter-TSS (NM_001128431) 35 NM_001128431 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 25716 chr7 14457907 14458011 + 0 NA intron (NM_145695, intron 20 of 23) intron (NM_145695, intron 20 of 23) 383491 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 3161 chr1 248838645 248838795 + 0 NA intron (NM_024836, intron 1 of 3) CpG 542 NM_024836 79894 Hs.521151 NM_024836 ENSG00000171161 ZNF672 - zinc finger protein 672 protein-coding 16908 chr2 200609086 200609190 + 0 NA intron (NM_001159, intron 11 of 34) intron (NM_001159, intron 11 of 34) 23130 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 12288 chr17 29390202 29390350 + 0 NA promoter-TSS (NR_039749) promoter-TSS (NR_039749) -386 NR_039749 100616122 NR_039749 ENSG00000160551 MIR4523 - microRNA 4523 ncRNA 17351 chr2 237674898 237675002 + 0 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) -17214 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 12148 chr17 16653632 16653658 + 0 NA intron (NM_020787, intron 1 of 5) CpG 208 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 8341 chr13 72781988 72782130 + 0 NA promoter-TSS (NM_014953) promoter-TSS (NM_014953) -33 NM_006346 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|PIBF progesterone immunomodulatory binding factor 1 protein-coding 7936 chr13 20174960 20175012 + 0 NA Intergenic Intergenic -13942 NM_021954 2700 Hs.130313 NM_021954 ENSG00000121743 GJA3 CTRCT14|CX46|CZP3 gap junction protein alpha 3 protein-coding 8113 chr13 36193328 36193432 + 0 NA intron (NM_001198910, intron 9 of 15) intron (NM_001198910, intron 9 of 15) 21235 NM_001282147 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 27959 chr8 65964761 65964898 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -56727 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 11426 chr16 57486381 57486523 + 0 NA promoter-TSS (NM_018110) promoter-TSS (NM_018110) 21 NM_018110 55715 Hs.279832 NM_018110 ENSG00000125170 DOK4 IRS-5|IRS5 docking protein 4 protein-coding 9647 chr14 99036062 99036198 + 0 NA Intergenic Intergenic 235583 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 10742 chr15 93428349 93428453 + 0 NA Intergenic Intergenic -339187 NM_020211 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 14250 chr19 17796729 17796745 + 0 NA intron (NM_014256, intron 1 of 2) intron (NM_014256, intron 1 of 2) 1627 NM_014256 10331 Hs.69009 NM_014256 ENSG00000179913 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 2494 chr1 205813107 205813278 + 0 NA promoter-TSS (NM_173854) promoter-TSS (NM_173854) 4 NM_173854 254428 Hs.20274 NM_173854 ENSG00000133065 SLC41A1 MgtE solute carrier family 41 member 1 protein-coding 26344 chr7 66115107 66115224 + 0 NA intron (NM_001040648, intron 1 of 2) CpG 347 NM_014478 27297 Hs.300684 NM_014478 ENSG00000241258 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9 CGRP receptor component protein-coding 13252 chr18 9136449 9136553 + 0 NA promoter-TSS (NM_001083625) promoter-TSS (NM_001083625) 219 NR_110772 101927275 Hs.656442 NR_110771 ENSG00000266053 NDUFV2-AS1 - NDUFV2 antisense RNA 1 ncRNA 23459 chr5 148146055 148146159 + 0 NA Intergenic Intergenic -22439 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 20106 chr3 128617702 128617806 + 0 NA Intergenic CpG 33122 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 18592 chr21 45748003 45748070 + 0 NA Intergenic Intergenic 88383 NR_038876 100129027 Hs.689591 NR_038876 ENSG00000205424 LOC100129027 - uncharacterized LOC100129027 ncRNA 11669 chr16 76676461 76676641 + 0 NA Intergenic LTR8B|LTR|ERV1 41553 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 25874 chr7 24757488 24757592 + 0 NA promoter-TSS (NM_001127453) promoter-TSS (NM_001127453) -76 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 DFNA5 ICERE-1 DFNA5, deafness associated tumor suppressor protein-coding 14667 chr19 48900234 48900249 + 0 NA 5' UTR (NM_006184, exon 1 of 13) 5' UTR (NM_006184, exon 1 of 13) 191 NM_006184 4924 Hs.631602 NM_006184 ENSG00000104805 NUCB1 CALNUC|NUC nucleobindin 1 protein-coding 2329 chr1 199272748 199272942 + 0 NA Intergenic Intergenic -253881 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 4437 chr10 117456554 117456658 + 0 NA Intergenic MER4CL34|LTR|ERV1 -81139 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 17805 chr20 24992671 24992804 + 0 NA promoter-TSS (NM_020531) promoter-TSS (NM_020531) 52 NM_020531 57136 Hs.472330 NM_020531 ENSG00000101474 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 13683 chr18 61896886 61896990 + 0 NA Intergenic Intergenic -3867 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 14649 chr19 48502243 48502347 + 0 NA intron (NM_001080434, intron 8 of 15) intron (NM_001080434, intron 8 of 15) 10894 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 28751 chr8 135457238 135457391 + 0 NA promoter-TSS (NM_006558) promoter-TSS (NM_006558) -151 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 6150 chr11 118145489 118145611 + 0 NA promoter-TSS (NM_001142349) promoter-TSS (NM_001142349) -81 NR_024527 6330 Hs.65239 NM_174934 ENSG00000177098 SCN4B ATFB17|LQT10|Navbeta4 sodium voltage-gated channel beta subunit 4 protein-coding 23353 chr5 140564563 140564697 + 0 NA promoter-TSS (NR_106889) promoter-TSS (NR_106889) -26 NM_133173 10307 Hs.529449 NM_006051 ENSG00000113108 APBB3 FE65L2|SRA amyloid beta precursor protein binding family B member 3 protein-coding 16423 chr2 145685837 145685941 + 0 NA Intergenic Intergenic -901168 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 15516 chr2 47906417 47906456 + 0 NA promoter-TSS (NM_001190274) promoter-TSS (NM_001190274) -643 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 21266 chr4 26319090 26319226 + 0 NA promoter-TSS (NM_005349) promoter-TSS (NM_005349) -552 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 19775 chr3 101686740 101686885 + 0 NA promoter-TSS (NM_000986) promoter-TSS (NM_000986) -93 NM_000986 6152 Hs.477028 NM_000986 ENSG00000114391 RPL24 HEL-S-310|L24 ribosomal protein L24 protein-coding 5477 chr11 65477526 65477711 + 0 NA Intergenic CpG -20120 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 21050 chr3 196287727 196287835 + 0 NA promoter-TSS (NM_001312673) promoter-TSS (NM_001312673) -29 NM_001312673 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 4194 chr10 99620713 99620817 + 0 NA promoter-TSS (NM_031212) promoter-TSS (NM_031212) -301 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 7240 chr12 67648619 67648723 + 0 NA promoter-TSS (NM_003583) promoter-TSS (NM_003583) -61 NM_006482 8445 Hs.173135 NM_003583 ENSG00000127334 DYRK2 - dual specificity tyrosine phosphorylation regulated kinase 2 protein-coding 21540 chr4 85318525 85318577 + 0 NA Intergenic Intergenic -156580 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 24451 chr6 35486263 35486401 + 0 NA intron (NM_003214, intron 2 of 12) CpG 10752 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding 14335 chr19 30392315 30392337 + 0 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 19933 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 13658 chr18 59516453 59516595 + 0 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) -157248 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 24032 chr6 10873484 10873568 + 0 NA 3' UTR (NM_004752, exon 5 of 5) 3' UTR (NM_004752, exon 5 of 5) 8339 NM_004752 9247 Hs.227098 NM_004752 ENSG00000124827 GCM2 GCMB|hGCMb glial cells missing homolog 2 protein-coding 22252 chr5 14581673 14581777 + 0 NA promoter-TSS (NM_019018) promoter-TSS (NM_019018) -57 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 FAM105A NET20 family with sequence similarity 105 member A protein-coding 25535 chr7 1138301 1138441 + 0 NA promoter-TSS (NM_001318252) promoter-TSS (NM_001318252) -114 NM_001134395 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 3833 chr10 70233449 70233601 + 0 NA promoter-TSS (NM_021129) promoter-TSS (NM_021129) -91 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 12484 chr17 41530276 41530404 + 0 NA Intergenic Intergenic -1951 NM_002276 3880 Hs.654568 NM_002276 ENSG00000171345 KRT19 CK19|K19|K1CS keratin 19 protein-coding 2311 chr1 198018793 198018883 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR 101451 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 22620 chr5 62083881 62083918 + 0 NA Intergenic Intergenic -222263 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 5002 chr11 20364022 20364126 + 0 NA promoter-TSS (NM_001098523) promoter-TSS (NM_001098523) -67 NM_001098523 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 2556 chr1 209364881 209364929 + 0 NA Intergenic Intergenic 39449 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 28245 chr8 96147117 96147246 + 0 NA intron (NM_001001557, intron 1 of 1) intron (NM_001001557, intron 1 of 1) 13611 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1 growth differentiation factor 6 protein-coding 29329 chr9 78866796 78866929 + 0 NA Intergenic Intergenic 278804 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 28131 chr8 85841018 85841100 + 0 NA Intergenic Intergenic -13117 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 22627 chr5 64768590 64768744 + 0 NA promoter-TSS (NM_001297644) promoter-TSS (NM_001297644) 2 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 9662 chr14 99793415 99793495 + 0 NA promoter-TSS (NM_004434) promoter-TSS (NM_004434) 47 NM_001008707 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP echinoderm microtubule associated protein like 1 protein-coding 25288 chr6 146546621 146546725 + 0 NA intron (NM_006834, intron 1 of 2) intron (NM_006834, intron 1 of 2) 2981 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 18533 chr21 38805865 38805884 + 0 NA promoter-TSS (NM_005239) promoter-TSS (NM_005239) 43 NM_005239 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding 22882 chr5 91787788 91787892 + 0 NA Intergenic Charlie24|DNA|hAT-Charlie -404467 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 8110 chr13 35630746 35630895 + 0 NA intron (NM_015678, intron 49 of 57) intron (NM_015678, intron 49 of 57) -66704 NR_132116 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 26642 chr7 96548872 96549015 + 0 NA Intergenic Intergenic -45420 NM_001201451 401388 Hs.734935 NM_207503 ENSG00000127922 C7orf76 - chromosome 7 open reading frame 76 protein-coding 2320 chr1 198641701 198641805 + 0 NA intron (NM_001267798, intron 2 of 3) intron (NM_001267798, intron 2 of 3) 2785 NM_002838 5788 Hs.654514 NM_002838 ENSG00000081237 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type C protein-coding 13671 chr18 60053837 60053982 + 0 NA Intergenic Intergenic 153949 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 11367 chr16 53784489 53784593 + 0 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 80578 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO, alpha-ketoglutarate dependent dioxygenase protein-coding 11899 chr17 1684869 1685011 + 0 NA promoter-TSS (NM_006445) promoter-TSS (NM_006445) -58 NM_006445 10594 Hs.181368 NM_006445 ENSG00000174231 PRPF8 HPRP8|PRP8|PRPC8|RP13|SNRNP220 pre-mRNA processing factor 8 protein-coding 24886 chr6 85923141 85923245 + 0 NA Intergenic LTR41|LTR|ERVL -244460 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2 small nucleolar RNA host gene 5 ncRNA 2440 chr1 203692784 203692902 + 0 NA intron (NM_001684, intron 2 of 20) intron (NM_001684, intron 2 of 20) -36738 NR_003019 677843 Hs.676135 NR_003019 ENSG00000221643 SNORA77 ACA63|SNORA77A small nucleolar RNA, H/ACA box 77 snoRNA 6924 chr12 46219973 46219997 + 0 NA intron (NM_001278390, intron 5 of 16) intron (NM_001278390, intron 5 of 16) 46510 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 7789 chr12 121950127 121950206 + 0 NA intron (NM_144668, intron 8 of 21) L1MB5|LINE|L1 31609 NM_001178003 144406 Hs.709837 NM_144668 ENSG00000158023 WDR66 CaM-IP4 WD repeat domain 66 protein-coding 14160 chr19 13261290 13261346 + 0 NA intron (NM_000068, intron 26 of 46) intron (NM_000068, intron 26 of 46) 110850 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 13732 chr18 66724813 66724917 + 0 NA Intergenic Intergenic -120727 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 13044 chr17 76597469 76597602 + 0 NA Intergenic Intergenic -11472 NM_006456 10610 Hs.592105 NM_006456 ENSG00000070731 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 93 chr1 6701820 6701924 + 0 NA promoter-TSS (NM_018198) promoter-TSS (NM_018198) 34 NM_018198 55735 Hs.462640 NM_018198 ENSG00000007923 DNAJC11 dJ126A5.1 DnaJ heat shock protein family (Hsp40) member C11 protein-coding 25250 chr6 142885355 142885444 + 0 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 59802 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 20992 chr3 193301642 193301759 + 0 NA intron (NM_198505, intron 23 of 29) intron (NM_198505, intron 23 of 29) -5544 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 11385 chr16 55568268 55568372 + 0 NA TTS (NM_032330) TTS (NM_032330) 1648 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 - calpain small subunit 2 protein-coding 5735 chr11 80873465 80873569 + 0 NA Intergenic Intergenic -110714 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 29337 chr9 79221264 79221368 + 0 NA Intergenic LTR78|LTR|ERV1 -75650 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 27782 chr8 48408530 48408634 + 0 NA Intergenic Intergenic -142985 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 29264 chr9 75169891 75169989 + 0 NA Intergenic LTR23|LTR|ERV1 81458 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 22207 chr5 10310536 10310640 + 0 NA Intergenic Intergenic -2532 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 7839 chr12 123972918 123973022 + 0 NA promoter-TSS (NM_001204299) promoter-TSS (NM_001204299) 15 NM_001304961 80212 Hs.114111 NM_025140 ENSG00000119242 CCDC92 - coiled-coil domain containing 92 protein-coding 21596 chr4 95305080 95305151 + 0 NA intron (NM_003728, intron 2 of 15) intron (NM_003728, intron 2 of 15) 213624 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 14343 chr19 32581072 32581146 + 0 NA promoter-TSS (NM_004708) promoter-TSS (NM_004708) -79 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 23704 chr5 170614821 170614925 + 0 NA intron (NM_014592, intron 1 of 7) intron (NM_014592, intron 1 of 7) 66597 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 11674 chr16 77236127 77236340 + 0 NA Intergenic Intergenic 36781 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 2429 chr1 203340230 203340334 + 0 NA TTS (NR_103757) TTS (NR_103757) 11147 NM_002023 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 2790 chr1 223665634 223665806 + 0 NA promoter-TSS (NM_001143962) promoter-TSS (NM_001143962) 14 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 25030 chr6 112299100 112299172 + 0 NA intron (NR_121193, intron 2 of 2) intron (NR_121193, intron 2 of 2) -44421 NM_001105209 3910 Hs.654572 NM_002290 ENSG00000112769 LAMA4 CMD1JJ|LAMA3|LAMA4*-1 laminin subunit alpha 4 protein-coding 17088 chr2 216713763 216713867 + 0 NA Intergenic Intergenic -18266 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 22725 chr5 74035804 74035926 + 0 NA Intergenic Intergenic 222347 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 3688 chr10 52455238 52455336 + 0 NA promoter-TSS (NR_120642) promoter-TSS (NR_120642) -15 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LINC01468 lnc-MBL2-4 long intergenic non-protein coding RNA 1468 ncRNA 16612 chr2 168246560 168246664 + 0 NA intron (NM_013233, intron 1 of 17) CpG 983 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 30599 chrX 30906932 30907036 + 0 NA Intergenic MER77B|LTR|ERVL -17590 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding 3767 chr10 62804681 62804811 + 0 NA promoter-TSS (NM_032804) promoter-TSS (NM_032804) -10 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 24035 chr6 11143869 11143973 + 0 NA Intergenic Intergenic -32083 NM_207582 405754 Hs.631996 NM_207582 ENSG00000244476 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD member 1 protein-coding 409 chr1 26169823 26169972 + 0 NA promoter-TSS (NM_015871) promoter-TSS (NM_015871) 0 NM_015871 51042 Hs.477273 NM_015871 ENSG00000142684 ZNF593 ZT86 zinc finger protein 593 protein-coding 28920 chr9 6757593 6757697 + 0 NA promoter-TSS (NM_001304341) promoter-TSS (NM_001304341) 4 NM_001304341 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 20316 chr3 142853464 142853549 + 0 NA intron (NM_013363, intron 2 of 8) L2b|LINE|L2 35697 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 7858 chr12 124940085 124940159 + 0 NA Intergenic Intergenic 24575 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 21406 chr4 61427270 61427374 + 0 NA intron (NM_015236, intron 2 of 24) HERVL18-int|LTR|ERVL 226066 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 26183 chr7 44885600 44885722 + 0 NA promoter-TSS (NM_033224) promoter-TSS (NM_033224) -276 NM_033224 5814 Hs.349150 NM_033224 ENSG00000146676 PURB PURBETA purine rich element binding protein B protein-coding 16686 chr2 174487288 174487337 + 0 NA promoter-TSS (NM_001033045) promoter-TSS (NM_001033045) -224 NM_001267051 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 14385 chr19 36014250 36014400 + 0 NA promoter-TSS (NM_001297701) promoter-TSS (NM_001297701) -82 NM_001297701 84964 Hs.71941 NM_032878 ENSG00000239382 ALKBH6 ABH6 alkB homolog 6 protein-coding 7137 chr12 56360360 56360464 + 0 NA promoter-TSS (NM_005419) promoter-TSS (NM_005419) -159 NM_005419 6773 Hs.530595 NM_005419 ENSG00000170581 STAT2 IMD44|ISGF-3|P113|STAT113 signal transducer and activator of transcription 2 protein-coding 27644 chr8 30082375 30082534 + 0 NA intron (NM_016127, intron 1 of 5) intron (NM_016127, intron 1 of 5) 754 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 1958 chr1 162906657 162906761 + 0 NA Intergenic Intergenic -37894 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 812 chr1 46172025 46172130 + 0 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 2824 NM_001328648 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 8275 chr13 50124437 50124571 + 0 NA intron (NR_109974, intron 2 of 6) CpG 1037 NR_002612 8847 Hs.547964 NR_002612 ENSG00000231607 DLEU2 1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 (non-protein coding) ncRNA 25477 chr6 166878061 166878165 + 0 NA Intergenic Intergenic -15562 NM_001006932 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 585 chr1 33328030 33328050 + 0 NA intron (NM_001330488, intron 12 of 12) MIRb|SINE|MIR 4452 NR_037400 100500853 NR_037400 ENSG00000134686 MIR3605 mir-3605 microRNA 3605 ncRNA 29677 chr9 98791223 98791335 + 0 NA intron (NM_173551, intron 1 of 14) intron (NM_173551, intron 1 of 14) 5263 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 15660 chr2 64453238 64453388 + 0 NA promoter-TSS (NM_014181) promoter-TSS (NM_014181) -880 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 8970 chr14 50067961 50068073 + 0 NA intron (NR_131171, intron 2 of 8) MIR|SINE|MIR 37026 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 29049 chr9 34126741 34126747 + 0 NA promoter-TSS (NM_015397) promoter-TSS (NM_015397) 29 NM_015397 25853 Hs.493750 NM_015397 ENSG00000198876 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 8837 chr14 34139998 34140152 + 0 NA Intergenic L1PA7|LINE|L1 -188997 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 19489 chr3 49104798 49104827 + 0 NA non-coding (NR_073590, exon 1 of 24) non-coding (NR_073590, exon 1 of 24) 317 NM_005051 5859 Hs.79322 NM_005051 ENSG00000172053 QARS GLNRS|MSCCA|PRO2195 glutaminyl-tRNA synthetase protein-coding 5480 chr11 65493968 65494078 + 0 NA Intergenic Intergenic -3715 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 8023 chr13 27620586 27620718 + 0 NA promoter-TSS (NM_153371) promoter-TSS (NM_153371) -69 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 4653 chr11 350914 350957 + 0 NA Intergenic MER41-int|LTR|ERV1 -18860 NM_178537 338707 Hs.148074 NM_178537 ENSG00000182272 B4GALNT4 - beta-1,4-N-acetyl-galactosaminyltransferase 4 protein-coding 30662 chrX 46912327 46912437 + 0 NA promoter-TSS (NM_014735) promoter-TSS (NM_014735) -51 NM_014735 9767 Hs.371977 NM_014735 ENSG00000102221 JADE3 JADE-3|PHF16 jade family PHD finger 3 protein-coding 6831 chr12 31659199 31659347 + 0 NA promoter-TSS (NM_173802) promoter-TSS (NM_173802) 86 NM_173802 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein beta subunit lysine methyltransferase protein-coding 15006 chr2 11133028 11133132 + 0 NA promoter-TSS (NR_040080) promoter-TSS (NR_040080) 27 NM_182500 130813 Hs.406894 NM_182500 ENSG00000150873 C2orf50 - chromosome 2 open reading frame 50 protein-coding 28345 chr8 102412824 102412991 + 0 NA promoter-TSS (NM_001282873) promoter-TSS (NM_001282873) -218 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 2381 chr1 201713511 201713588 + 0 NA intron (NM_020443, intron 2 of 29) intron (NM_020443, intron 2 of 29) -5959 NR_049823 100847050 NR_049823 ENSG00000264802 MIR5191 - microRNA 5191 ncRNA 14295 chr19 19405705 19405809 + 0 NA intron (NM_017660, intron 1 of 11) CpG 19924 NM_017660 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 25418 chr6 158704269 158704407 + 0 NA intron (NM_001318745, intron 3 of 14) intron (NM_001318745, intron 3 of 14) 40935 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 11849 chr16 89508270 89508453 + 0 NA promoter-TSS (NM_199367) promoter-TSS (NM_199367) -27 NM_003119 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7, paraplegin matrix AAA peptidase subunit protein-coding 21198 chr4 15401019 15401123 + 0 NA intron (NM_001135171, intron 1 of 2) intron (NM_001135171, intron 1 of 2) 26520 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and tumor necrosis factor related protein 7 protein-coding 22146 chr5 1161318 1161422 + 0 NA Intergenic Intergenic 17235 NR_109911 101928857 Hs.593732 NR_109911 ENSG00000249201 CTD-3080P12.3 - uncharacterized LOC101928857 ncRNA 19954 chr3 117252371 117252375 + 0 NA Intergenic Intergenic 330942 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 30256 chr9 130330397 130330517 + 0 NA intron (NM_001291815, intron 22 of 97) intron (NM_001291815, intron 22 of 97) 64578 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 1237 chr1 86992979 86993083 + 0 NA intron (NM_012262, intron 1 of 6) MER39|LTR|ERV1 78379 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 28106 chr8 81842159 81842307 + 0 NA promoter-TSS (NM_022133) promoter-TSS (NM_022133) 53 NM_152837 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 6937 chr12 47753462 47753603 + 0 NA intron (NM_006105, intron 2 of 27) intron (NM_006105, intron 2 of 27) 4866 NM_001098532 10411 Hs.8578 NM_006105 ENSG00000079337 RAPGEF3 CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910 Rap guanine nucleotide exchange factor 3 protein-coding 5315 chr11 59615794 59615990 + 0 NA 5' UTR (NM_002556, exon 1 of 14) 5' UTR (NM_002556, exon 1 of 14) 252 NM_002556 5007 Hs.597091 NM_002556 ENSG00000110048 OSBP OSBP1 oxysterol binding protein protein-coding 18531 chr21 38798593 38798697 + 0 NA Intergenic Intergenic -6662 NM_001256295 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding 30296 chr9 132575103 132575207 + 0 NA Intergenic Intergenic -7451 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 26907 chr7 120951079 120951233 + 0 NA intron (NM_019071, intron 1 of 11) CpG 393 NM_198267 54556 Hs.489811 NM_019071 ENSG00000071243 ING3 Eaf4|ING2|MEAF4|p47ING3 inhibitor of growth family member 3 protein-coding 5691 chr11 76825056 76825154 + 0 NA Intergenic Intergenic 33353 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 29780 chr9 107489951 107490043 + 0 NA promoter-TSS (NM_001314052) promoter-TSS (NM_001314052) -277 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 18910 chr22 39097234 39097379 + 0 NA promoter-TSS (NM_001166004) promoter-TSS (NM_001166004) 82 NM_001166003 164668 Hs.440515 NM_181773 ENSG00000100298 APOBEC3H A3H|ARP-10|ARP10 apolipoprotein B mRNA editing enzyme catalytic subunit 3H protein-coding 28736 chr8 133942693 133942894 + 0 NA Intergenic LTR8B|LTR|ERV1 56297 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 28272 chr8 98294191 98294295 + 0 NA non-coding (NR_135745, exon 1 of 12) non-coding (NR_135745, exon 1 of 12) 150 NR_135745 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 9792 chr15 23565534 23565638 + 0 NA 5' UTR (NM_005664, exon 1 of 1) 5' UTR (NM_005664, exon 1 of 1) 279 NM_005664 7681 Hs.72964 NM_005664 ENSG00000179455 MKRN3 CPPB2|D15S9|RNF63|ZFP127|ZNF127 makorin ring finger protein 3 protein-coding 11095 chr16 20084740 20084844 + 0 NA Intergenic Intergenic -11014 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 29716 chr9 101465474 101465578 + 0 NA Intergenic Intergenic -2913 NR_121576 101928470 Hs.656088 NR_121573 ENSG00000225376 TMEM246-AS1 - TMEM246 antisense RNA 1 ncRNA 11185 chr16 28924677 28924744 + 0 NA intron (NM_024816, intron 1 of 12) intron (NM_024816, intron 1 of 12) 501 NM_024816 79874 Hs.555978 NM_024816 ENSG00000177548 RABEP2 FRA rabaptin, RAB GTPase binding effector protein 2 protein-coding 8780 chr14 28676612 28676749 + 0 NA Intergenic Intergenic 88639 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 8830 chr14 34043807 34043911 + 0 NA Intergenic Intergenic -92781 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 4929 chr11 16883204 16883308 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 131160 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 31155 chrX 151796747 151796851 + 0 NA Intergenic Intergenic 62053 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 19122 chr3 8663571 8663675 + 0 NA Intergenic Intergenic -11545 NM_001256749 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 27304 chr7 158958005 158958109 + 0 NA Intergenic Intergenic -50297 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 28917 chr9 6566543 6566627 + 0 NA intron (NM_000170, intron 15 of 24) intron (NM_000170, intron 15 of 24) 79107 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 27612 chr8 28351478 28351677 + 0 NA exon (NM_018660, exon 7 of 10) exon (NM_018660, exon 7 of 10) 12929 NM_001284244 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 17910 chr20 34876055 34876148 + 0 NA promoter-TSS (NM_001076552) promoter-TSS (NM_001076552) -424 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short-chain family member 2 protein-coding 1332 chr1 94258943 94259079 + 0 NA Intergenic Intergenic -11251 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 12140 chr17 16381017 16381203 + 0 NA promoter-TSS (NM_001281720) promoter-TSS (NM_001281720) 13 NM_001281720 7314 Hs.356190 NM_018955 ENSG00000170315 UBB HEL-S-50 ubiquitin B protein-coding 5156 chr11 35276499 35276619 + 0 NA intron (NM_001252652, intron 10 of 11) intron (NM_001252652, intron 10 of 11) 137689 NM_001202556 960 Hs.502328 NM_000610 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 5409 chr11 63804390 63804539 + 0 NA Intergenic Arthur1B|DNA|hAT-Tip100 -8910 NM_138471 144097 Hs.502793 NM_138471 ENSG00000168005 C11orf84 - chromosome 11 open reading frame 84 protein-coding 22170 chr5 5104636 5104740 + 0 NA Intergenic MER74A|LTR|ERVL -26377 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 24845 chr6 81772936 81773040 + 0 NA Intergenic L2|LINE|L2 -20277 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 FAM46A C6orf37|XTP11 family with sequence similarity 46 member A protein-coding 14059 chr19 9827795 9827907 + 0 NA promoter-TSS (NM_024292) promoter-TSS (NM_024292) -29 NM_001048241 59286 Hs.534477 NM_024292 ENSG00000198258 UBL5 HUB1 ubiquitin like 5 protein-coding 24078 chr6 13814239 13814249 + 0 NA exon (NM_001031713, exon 1 of 9) exon (NM_001031713, exon 1 of 9) 316 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 16261 chr2 123738803 123738907 + 0 NA Intergenic L1MB4|LINE|L1 -286432 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 1117 chr1 71086500 71086604 + 0 NA intron (NR_046217, intron 1 of 3) FordPrefect|DNA|hAT-Tip100 5228 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 12372 chr17 35460662 35460766 + 0 NA Intergenic (CCCGC)n|Simple_repeat|Simple_repeat -11877 NM_144682 146857 Hs.462833 NM_144682 ENSG00000154760 SLFN13 SLFN10 schlafen family member 13 protein-coding 28586 chr8 124973201 124973314 + 0 NA promoter-TSS (NM_152412) promoter-TSS (NM_152412) -40 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 20800 chr3 183636616 183636790 + 0 NA intron (NM_017644, intron 1 of 7) CpG 1080 NM_017644 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|KRIP6 kelch like family member 24 protein-coding 13709 chr18 63476717 63476869 + 0 NA promoter-TSS (NM_002639) promoter-TSS (NM_002639) -118 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 871 chr1 52055172 52055303 + 0 NA promoter-TSS (NM_001136497) promoter-TSS (NM_001136497) 934 NR_046406 51060 Hs.476033 NM_015913 ENSG00000117862 TXNDC12 AG1|AGR1|ERP16|ERP18|ERP19|PDIA16|TLP19|hAG-1|hTLP19 thioredoxin domain containing 12 protein-coding 18197 chr20 50761684 50761779 + 0 NA Intergenic Intergenic 30187 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 16849 chr2 191677994 191678179 + 0 NA promoter-TSS (NM_001254736) promoter-TSS (NM_001254736) 14 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 12498 chr17 41717499 41717603 + 0 NA Intergenic LTR64|LTR|ERV1 5225 NM_000805 2520 Hs.2681 NM_000805 ENSG00000184502 GAST GAS gastrin protein-coding 14863 chr19 58228868 58228950 + 0 NA promoter-TSS (NM_001320783) promoter-TSS (NM_001320783) -5 NM_001320789 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 10484 chr15 76931600 76931704 + 0 NA promoter-TSS (NM_001271837) promoter-TSS (NM_001271837) 31 NM_001271837 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 18333 chr20 58651046 58651234 + 0 NA promoter-TSS (NR_037945) promoter-TSS (NR_037945) -113 NR_037943 8675 Hs.307913 NM_003763 ENSG00000124222 STX16 SYN16 syntaxin 16 protein-coding 8800 chr14 31881050 31881154 + 0 NA Intergenic Intergenic 166533 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|huInd1 nucleotide binding protein like protein-coding 12547 chr17 43556360 43556475 + 0 NA Intergenic Intergenic -9985 NM_001079675 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 13163 chr17 82283457 82283561 + 0 NA Intergenic Intergenic 9305 NR_135639 101929511 Hs.147682 NR_135639 ENSG00000265692 LINC01970 - long intergenic non-protein coding RNA 1970 ncRNA 3826 chr10 69458858 69459047 + 0 NA intron (NM_012339, intron 1 of 7) intron (NM_012339, intron 1 of 7) 7482 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 4042 chr10 88880564 88880568 + 0 NA 5' UTR (NM_020799, exon 1 of 11) 5' UTR (NM_020799, exon 1 of 11) 379 NM_020799 57559 Hs.16229 NM_020799 ENSG00000138134 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein like 1 protein-coding 15068 chr2 14903888 14903992 + 0 NA Intergenic Intergenic 268849 NM_001291410 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 24700 chr6 52995266 52995420 + 0 NA promoter-TSS (NM_001512) promoter-TSS (NM_001512) 37 NM_001512 2941 Hs.485557 NM_001512 ENSG00000170899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 21515 chr4 82900629 82900729 + 0 NA promoter-TSS (NM_001318120) promoter-TSS (NM_001318120) 29 NM_001317776 79725 Hs.582050 NM_024672 ENSG00000168152 THAP9 hTh9 THAP domain containing 9 protein-coding 30240 chr9 129752011 129752168 + 0 NA intron (NM_004878, intron 1 of 2) intron (NM_004878, intron 1 of 2) 976 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 19997 chr3 120146037 120146119 + 0 NA Intergenic Intergenic -51661 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 1704 chr1 151195363 151195484 + 0 NA Intergenic Intergenic -3121 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 30053 chr9 122099406 122099496 + 0 NA Intergenic Intergenic -5845 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 18897 chr22 38681855 38681968 + 0 NA promoter-TSS (NM_020243) promoter-TSS (NM_020243) -38 NM_020243 56993 Hs.595072 NM_020243 ENSG00000100216 TOMM22 1C9-2|MST065|MSTP065|TOM22 translocase of outer mitochondrial membrane 22 protein-coding 23824 chr5 179732631 179732783 + 0 NA promoter-TSS (NM_014757) promoter-TSS (NM_014757) -143 NM_014757 9794 Hs.631951 NM_014757 ENSG00000161021 MAML1 Mam-1|Mam1 mastermind like transcriptional coactivator 1 protein-coding 688 chr1 39919645 39919831 + 0 NA Intergenic Intergenic -17723 NM_001033082 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog protein-coding 750 chr1 43147654 43147803 + 0 NA promoter-TSS (NM_001101376) promoter-TSS (NM_001101376) -195 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 22954 chr5 102755172 102755302 + 0 NA 5' UTR (NM_001319943, exon 1 of 27) 5' UTR (NM_001319943, exon 1 of 27) 454 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 20457 chr3 155112752 155112856 + 0 NA intron (NM_007289, intron 3 of 22) intron (NM_007289, intron 3 of 22) 32514 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 22365 chr5 35317108 35317212 + 0 NA Intergenic Intergenic -86571 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|hPRLrI prolactin receptor protein-coding 9221 chr14 65102557 65102710 + 0 NA promoter-TSS (NM_145114) promoter-TSS (NM_145114) 62 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 6738 chr12 24488191 24488342 + 0 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 74324 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding 29068 chr9 35103152 35103272 + 0 NA promoter-TSS (NM_001287033) promoter-TSS (NM_001287033) -17 NM_001287031 30968 Hs.3439 NM_013442 ENSG00000165283 STOML2 HSPC108|SLP-2 stomatin like 2 protein-coding 22326 chr5 27241959 27242114 + 0 NA Intergenic L1PA16|LINE|L1 -203454 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 27291 chr7 158432118 158432286 + 0 NA intron (NM_130842, intron 1 of 21) intron (NM_130842, intron 1 of 21) 100611 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 30648 chrX 44872989 44873017 + 0 NA promoter-TSS (NR_111960) promoter-TSS (NR_111960) -172 NR_111960 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 23753 chr5 174355354 174355453 + 0 NA intron (NR_125806, intron 1 of 5) MIRb|SINE|MIR 19049 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 2570 chr1 209652462 209652615 + 0 NA promoter-TSS (NM_000228) promoter-TSS (NM_000228) -63 NM_000228 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 7972 chr13 23956210 23956397 + 0 NA Intergenic Intergenic -6988 NR_073430 400110 Hs.744780 NM_207439 ANKRD20A19P - ankyrin repeat domain 20 family member A19, pseudogene pseudo 18567 chr21 42879518 42879639 + 0 NA promoter-TSS (NM_033661) promoter-TSS (NM_033661) 5 NM_001260475 10785 Hs.248815 NM_018669 ENSG00000160193 WDR4 TRM82|TRMT82 WD repeat domain 4 protein-coding 3729 chr10 59906522 59906644 + 0 NA promoter-TSS (NM_005436) promoter-TSS (NM_005436) 73 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 27289 chr7 157991450 157991519 + 0 NA intron (NM_130843, intron 10 of 21) intron (NM_130843, intron 10 of 21) 136899 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 9981 chr15 43106054 43106145 + 0 NA promoter-TSS (NM_174916) promoter-TSS (NM_174916) -11 NM_174916 197131 Hs.591121 NM_174916 ENSG00000159459 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 22179 chr5 6400124 6400228 + 0 NA Intergenic Intergenic -21650 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 83 chr1 6438146 6438296 + 0 NA intron (NM_031475, intron 2 of 12) intron (NM_031475, intron 2 of 12) -8325 NR_036218 100422975 NR_036218 ENSG00000265392 MIR4252 - microRNA 4252 ncRNA 11361 chr16 53503422 53503522 + 0 NA promoter-TSS (NM_001308325) promoter-TSS (NM_001308325) -168 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 3375 chr10 21191624 21191680 + 0 NA Intergenic Intergenic 17350 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 6422 chr12 21707 21797 + 0 NA intron (NR_130745, intron 2 of 10) intron (NR_130745, intron 2 of 10) 10263 NR_130745 100288778 Hs.459573 NR_130745 ENSG00000226210 LOC100288778 - WAS protein family homolog 1 pseudogene pseudo 14252 chr19 17859648 17859798 + 0 NA promoter-TSS (NM_000980) promoter-TSS (NM_000980) -155 NM_000980 6142 Hs.337766 NM_000980 ENSG00000105640 RPL18A L18A ribosomal protein L18a protein-coding 8353 chr13 74047974 74048107 + 0 NA intron (NM_007249, intron 1 of 7) MLT1J|LTR|ERVL-MaLR 85889 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 27778 chr8 48370174 48370293 + 0 NA Intergenic L1MD2|LINE|L1 -181334 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 16667 chr2 172698350 172698497 + 0 NA Intergenic Intergenic -37374 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 2672 chr1 214507216 214507317 + 0 NA intron (NM_005401, intron 1 of 18) intron (NM_005401, intron 1 of 18) 44415 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 16701 chr2 176106661 176106741 + 0 NA promoter-TSS (NM_021192) promoter-TSS (NM_021192) -655 NM_021192 3237 Hs.421136 NM_021192 ENSG00000128713 HOXD11 HOX4|HOX4F homeobox D11 protein-coding 25048 chr6 116254065 116254211 + 0 NA promoter-TSS (NM_001322938) promoter-TSS (NM_001322938) -14 NM_001322940 29940 Hs.458358 NM_013352 ENSG00000111817 DSE DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 12863 chr17 65231811 65231915 + 0 NA Intergenic Intergenic 94525 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 14760 chr19 53103438 53103552 + 0 NA promoter-TSS (NM_001322125) promoter-TSS (NM_001322125) -61 NM_001322130 90338 Hs.655967 NM_033288 ENSG00000170949 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 10378 chr15 70492953 70493057 + 0 NA Intergenic Intergenic 93601 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LOC101929151 - uncharacterized LOC101929151 ncRNA 19395 chr3 41102159 41102263 + 0 NA Intergenic Intergenic -97213 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 28907 chr9 5879608 5879712 + 0 NA Intergenic Intergenic -11249 NM_005511 2315 Hs.154069 NM_005511 ENSG00000120215 MLANA MART-1|MART1 melan-A protein-coding 11892 chr17 1423011 1423115 + 0 NA 3' UTR (NM_005206, exon 3 of 3) 3' UTR (NM_005206, exon 3 of 3) -22801 NM_006761 7531 Hs.513851 NM_006761 ENSG00000108953 YWHAE 14-3-3E|HEL2|KCIP-1|MDCR|MDS tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon protein-coding 962 chr1 59434433 59434537 + 0 NA intron (NM_001244714, intron 3 of 13) intron (NM_001244714, intron 3 of 13) -81144 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 17379 chr2 239824375 239824513 + 0 NA Intergenic MSTB|LTR|ERVL-MaLR 61584 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 26746 chr7 102876003 102876155 + 0 NA intron (NR_105043, intron 17 of 20) intron (NR_105043, intron 17 of 20) -36818 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 12619 chr17 48025093 48025215 + 0 NA Intergenic CpG 12093 NR_029687 406943 NR_029687 ENSG00000207947 MIR152 MIRN152|mir-152 microRNA 152 ncRNA 7663 chr12 111841909 111842047 + 0 NA promoter-TSS (NM_139078) promoter-TSS (NM_139078) -250 NM_003668 8550 Hs.333120 NM_003668 ENSG00000089022 MAPKAPK5 MAPKAP-K5|MK-5|MK5|PRAK mitogen-activated protein kinase-activated protein kinase 5 protein-coding 6068 chr11 111446623 111446727 + 0 NA Intergenic Intergenic -28489 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 28564 chr8 123182490 123182608 + 0 NA 5' UTR (NM_207006, exon 2 of 6) 5' UTR (NM_207006, exon 2 of 6) 197 NM_001288587 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 20583 chr3 167380262 167380366 + 0 NA promoter-TSS (NM_001199202) promoter-TSS (NM_001199202) -17 NM_024687 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 29570 chr9 93224761 93224900 + 0 NA intron (NM_001282394, intron 1 of 29) intron (NM_001282394, intron 1 of 29) 39900 NM_001282394 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 3033 chr1 236531757 236531870 + 0 NA intron (NM_201544, intron 2 of 9) MER68|LTR|ERVL -7305 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 23763 chr5 175347280 175347384 + 0 NA Intergenic Intergenic 96828 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 14125 chr19 11739035 11739196 + 0 NA promoter-TSS (NM_001080493) promoter-TSS (NM_001080493) -106 NM_001080493 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 4802 chr11 9663873 9664027 + 0 NA promoter-TSS (NM_015055) promoter-TSS (NM_015055) -127 NM_001297714 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 SWAP switching B-cell complex subunit 70 protein-coding 26112 chr7 41107719 41107882 + 0 NA intron (NR_110832, intron 1 of 5) intron (NR_110832, intron 1 of 5) 6196 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 5268 chr11 57335825 57335982 + 0 NA promoter-TSS (NM_003146) promoter-TSS (NM_003146) -26 NM_003146 6749 Hs.523680 NM_003146 ENSG00000149136 SSRP1 FACT|FACT80|T160 structure specific recognition protein 1 protein-coding 15357 chr2 37189973 37190077 + 0 NA Intergenic Intergenic -1478 NM_001032377 391365 Hs.631892 NM_001032377 ENSG00000138068 SULT6B1 - sulfotransferase family 6B member 1 protein-coding 14913 chr2 1705110 1705274 + 0 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 39355 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 2732 chr1 220089727 220089899 + 0 NA promoter-TSS (NM_001286149) promoter-TSS (NM_001286149) 40 NM_001286149 10380 Hs.406134 NM_006085 ENSG00000162813 BPNT1 HEL20|PIP 3'(2'), 5'-bisphosphate nucleotidase 1 protein-coding 6025 chr11 108121492 108121512 + 0 NA promoter-TSS (NM_000019) promoter-TSS (NM_000019) -29 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 2155 chr1 180572297 180572426 + 0 NA Intergenic L2c|LINE|L2 13387 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 1711 chr1 151458400 151458499 + 0 NA intron (NM_145796, intron 1 of 16) intron (NM_145796, intron 1 of 16) 1016 NM_015100 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element with ZNF domain protein-coding 2836 chr1 225772419 225772581 + 0 NA Intergenic Intergenic -5313 NM_003133 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 4780 chr11 8566873 8566977 + 0 NA intron (NM_030906, intron 1 of 13) AluJb|SINE|Alu 27083 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 3720 chr10 58641161 58641265 + 0 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -73802 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 3242 chr10 5977666 5977770 + 0 NA promoter-TSS (NM_001256765) promoter-TSS (NM_001256765) -107 NM_172200 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 23291 chr5 137231702 137231806 + 0 NA intron (NM_004598, intron 3 of 10) L1MD2|LINE|L1 103557 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 5628 chr11 72223177 72223268 + 0 NA Intergenic CpG -1616 NM_001567 3636 Hs.523875 NM_001567 ENSG00000165458 INPPL1 OPSMD|SHIP2 inositol polyphosphate phosphatase like 1 protein-coding 17280 chr2 232349299 232349403 + 0 NA Intergenic Intergenic -29183 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 7403 chr12 89951827 89951940 + 0 NA Intergenic Intergenic 4190 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LOC105369891 - uncharacterized LOC105369891 ncRNA 13485 chr18 45059772 45059876 + 0 NA intron (NM_015559, intron 5 of 5) L1MC5|LINE|L1 -89658 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 13142 chr17 81860647 81860751 + 0 NA promoter-TSS (NM_000918) promoter-TSS (NM_000918) -31 NM_000918 5034 Hs.464336 NM_000918 ENSG00000185624 P4HB CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB prolyl 4-hydroxylase subunit beta protein-coding 17827 chr20 29297659 29297771 + 0 NA Intergenic CpG 119246 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 13300 chr18 22169405 22169529 + 0 NA promoter-TSS (NM_005257) promoter-TSS (NM_005257) 30 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 11004 chr16 10653118 10653247 + 0 NA intron (NM_144674, intron 5 of 6) intron (NM_144674, intron 5 of 6) 41763 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 9510 chr14 88554909 88554912 + 0 NA promoter-TSS (NM_007039) promoter-TSS (NM_007039) -131 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase, non-receptor type 21 protein-coding 2030 chr1 168136265 168136304 + 0 NA exon (NM_001267613, exon 1 of 5) exon (NM_001267613, exon 1 of 5) 152 NM_001267612 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 27738 chr8 41792558 41792662 + 0 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 5012 NM_000037 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 15169 chr2 23927042 23927142 + 0 NA promoter-TSS (NR_125717) promoter-TSS (NR_125717) 22 NR_125717 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family, AAA domain containing 2B protein-coding 20221 chr3 136625304 136625405 + 0 NA intron (NM_005862, intron 2 of 33) L2b|LINE|L2 127049 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 1595 chr1 117842602 117842640 + 0 NA Intergenic L1PA13|LINE|L1 87058 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3 ganglioside induced differentiation associated protein 2 protein-coding 30444 chrX 2609226 2609405 + 0 NA promoter-TSS (NR_033381) promoter-TSS (NR_033381) 50 NR_033381 401577 Hs.444541 NR_033380 ENSG00000223773 CD99P1 CD99L1|CXYorf12|MIC2R|NCRNA00103 CD99 molecule pseudogene 1 pseudo 7519 chr12 100573556 100573685 + 0 NA promoter-TSS (NM_174942) promoter-TSS (NM_174942) -41 NM_001303130 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 28622 chr8 126876829 126876933 + 0 NA Intergenic Intergenic -136273 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 22714 chr5 73498279 73498427 + 0 NA promoter-TSS (NM_001037637) promoter-TSS (NM_001037637) -72 NM_001037637 689 Hs.591768 NM_001207 ENSG00000145741 BTF3 BETA-NAC|BTF3a|BTF3b|NACB basic transcription factor 3 protein-coding 14477 chr19 41439542 41439679 + 0 NA promoter-TSS (NM_001167868) promoter-TSS (NM_001167868) -34 NM_001167868 55101 Hs.351099 NM_018035 ENSG00000105341 ATP5SL - ATP5S like protein-coding 5664 chr11 74417665 74417769 + 0 NA Intergenic Intergenic 18480 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 23253 chr5 134587037 134587104 + 0 NA Intergenic Intergenic 45773 NM_001033503 51128 Hs.432984 NM_016103 ENSG00000152700 SAR1B ANDD|CMRD|GTBPB|SARA2 secretion associated Ras related GTPase 1B protein-coding 1610 chr1 119686731 119686880 + 0 NA Intergenic Intergenic -24991 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 17990 chr20 38765070 38765174 + 0 NA intron (NM_024855, intron 5 of 8) intron (NM_024855, intron 5 of 8) 16668 NM_024855 79913 Hs.371585 NM_024855 ENSG00000101442 ACTR5 Arp5|INO80M ARP5 actin-related protein 5 homolog protein-coding 779 chr1 44327991 44328123 + 0 NA intron (NM_001301701, intron 2 of 7) intron (NM_001301701, intron 2 of 7) 27222 NM_001301698 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 25358 chr6 152402070 152402224 + 0 NA intron (NM_182961, intron 46 of 145) LTR78|LTR|ERV1 21617 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 19699 chr3 88058974 88059128 + 0 NA promoter-TSS (NM_001008390) promoter-TSS (NM_001008390) -55 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 10070 chr15 50182323 50182481 + 0 NA 5' UTR (NM_001159629, exon 1 of 9) 5' UTR (NM_001159629, exon 1 of 9) 206 NM_003645 11001 Hs.11729 NM_003645 ENSG00000140284 SLC27A2 ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 solute carrier family 27 member 2 protein-coding 25433 chr6 159790294 159790404 + 0 NA promoter-TSS (NM_030752) promoter-TSS (NM_030752) -97 NM_014161 29074 Hs.416998 NM_014161 ENSG00000112110 MRPL18 HSPC071|L18mt|MRP-L18 mitochondrial ribosomal protein L18 protein-coding 16880 chr2 197453347 197453476 + 0 NA promoter-TSS (NM_025147) promoter-TSS (NM_025147) -12 NM_001320818 80219 Hs.606592 NM_025147 ENSG00000115520 COQ10B - coenzyme Q10B protein-coding 9546 chr14 90624363 90624467 + 0 NA intron (NM_001320421, intron 15 of 20) intron (NM_001320421, intron 15 of 20) -18214 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 12951 chr17 72589054 72589235 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 3660 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 12326 chr17 32342130 32342251 + 0 NA promoter-TSS (NM_022344) promoter-TSS (NM_022344) 19 NM_022344 64149 Hs.655257 NM_022344 ENSG00000108666 C17orf75 NJMU-R1|SRI2 chromosome 17 open reading frame 75 protein-coding 9319 chr14 71241255 71241261 + 0 NA Intergenic Intergenic -157079 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 20387 chr3 150370286 150370325 + 0 NA Intergenic Intergenic -38030 NR_130136 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 20332 chr3 143972540 143972664 + 0 NA promoter-TSS (NM_001134470) promoter-TSS (NM_001134470) -723 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 C3orf58 DIA1|GoPro49|HASF chromosome 3 open reading frame 58 protein-coding 27221 chr7 150831088 150831185 + 0 NA Intergenic Intergenic -21341 NM_001272072 26 Hs.647097 NM_001091 ENSG00000002726 AOC1 ABP|ABP1|DAO|DAO1|KAO amine oxidase, copper containing 1 protein-coding 28885 chr9 3888290 3888394 + 0 NA intron (NM_001042413, intron 7 of 10) intron (NM_001042413, intron 7 of 10) -10304 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 3001 chr1 234998496 234998670 + 0 NA Intergenic Intergenic -34584 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 6559 chr12 7970772 7970805 + 0 NA Intergenic CpG -34492 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 28854 chr8 144798805 144798894 + 0 NA promoter-TSS (NM_001317936) promoter-TSS (NM_001317936) -27 NM_001317936 340385 Hs.521942 NM_213605 ENSG00000197363 ZNF517 - zinc finger protein 517 protein-coding 21342 chr4 48944307 48944411 + 0 NA Intergenic Intergenic -37531 NM_152398 132299 Hs.95835 NM_152398 ENSG00000145247 OCIAD2 - OCIA domain containing 2 protein-coding 30898 chrX 103585463 103585567 + 0 NA promoter-TSS (NM_001006935) promoter-TSS (NM_001006935) 30 NM_001006937 79921 Hs.194329 NM_024863 ENSG00000133142 TCEAL4 NPD017|WEX7 transcription elongation factor A like 4 protein-coding 18064 chr20 44398481 44398615 + 0 NA intron (NM_001287182, intron 2 of 10) intron (NM_001287182, intron 2 of 10) -2708 NM_178850 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 28057 chr8 78208188 78208292 + 0 NA Intergenic Intergenic -307861 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 7309 chr12 78698876 78699016 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -165047 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 28155 chr8 88327486 88327590 + 0 NA promoter-TSS (NM_005941) promoter-TSS (NM_005941) -50 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 10036 chr15 47514301 47514352 + 0 NA intron (NM_001198999, intron 3 of 19) L2a|LINE|L2 -204163 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 3310 chr10 13969198 13969315 + 0 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 3113 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 4279 chr10 103527612 103527716 + 0 NA intron (NM_004210, intron 1 of 5) MER41B|LTR|ERV1 -10222 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 4083 chr10 93150410 93150541 + 0 NA Intergenic Intergenic 76585 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 7925 chr12 133130298 133130425 + 0 NA promoter-TSS (NM_015394) promoter-TSS (NM_015394) 112 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 30284 chr9 131733666 131733770 + 0 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 3820 NM_005312 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 26363 chr7 67129242 67129394 + 0 NA intron (NM_018264, intron 13 of 15) L1MC1|LINE|L1 -14921 NR_039793 100616310 NR_039793 ENSG00000266525 MIR4650-1 - microRNA 4650-1 ncRNA 10832 chr15 101692960 101693072 + 0 NA intron (NM_152334, intron 10 of 18) ERVL-B4-int|LTR|ERVL 31426 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 23238 chr5 134114520 134114624 + 0 NA promoter-TSS (NM_001346425) promoter-TSS (NM_001346425) -126 NM_003202 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 (T-cell specific, HMG-box) protein-coding 30357 chr9 136410512 136410663 + 0 NA promoter-TSS (NM_001039707) promoter-TSS (NM_001039707) 14 NM_001282944 23203 Hs.495471 NM_015160 ENSG00000165688 PMPCA Alpha-MPP|INPP5E|P-55|SCAR2 peptidase, mitochondrial processing alpha subunit protein-coding 25044 chr6 116100699 116100803 + 0 NA promoter-TSS (NM_152729) promoter-TSS (NM_152729) -85 NM_152729 221294 Hs.520341 NM_152729 ENSG00000178425 NT5DC1 C6orf200|LP2642|NT5C2L1 5'-nucleotidase domain containing 1 protein-coding 18779 chr22 30289708 30289831 + 0 NA promoter-TSS (NM_001037666) promoter-TSS (NM_001037666) -142 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 GATSL3 CASTOR1 GATS protein like 3 protein-coding 3209 chr10 4671610 4671737 + 0 NA intron (NR_024475, intron 1 of 3) L1MB7|LINE|L1 6397 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 LINC00704 - long intergenic non-protein coding RNA 704 ncRNA 27327 chr8 6406550 6406704 + 0 NA promoter-TSS (NR_040040) promoter-TSS (NR_040040) 35 NM_001172574 79648 Hs.593807 NM_024596 ENSG00000147316 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 20172 chr3 133127509 133127613 + 0 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 2740 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124 transmembrane protein 108 protein-coding 10090 chr15 51446470 51446574 + 0 NA Intergenic L1MEc|LINE|L1 69276 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 23232 chr5 133968632 133968777 + 0 NA promoter-TSS (NM_020199) promoter-TSS (NM_020199) 11 NM_020199 56951 Hs.744034 NM_020199 ENSG00000113583 C5orf15 HTGN29|KCT2 chromosome 5 open reading frame 15 protein-coding 20512 chr3 158110375 158110394 + 0 NA intron (NM_001271838, intron 1 of 9) CpG 332 NM_016625 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 1079 chr1 67736254 67736353 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 51126 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 21490 chr4 79650878 79650982 + 0 NA Intergenic Intergenic 158337 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 14140 chr19 12551557 12551691 + 0 NA promoter-TSS (NM_144976) promoter-TSS (NM_144976) -82 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 22166 chr5 2780486 2780621 + 0 NA Intergenic Intergenic 28422 NR_122125 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 14672 chr19 49050503 49050623 + 0 NA Intergenic Intergenic -1452 NM_033183 94115 Hs.659014 NM_033183 ENSG00000213030 CGB8 - chorionic gonadotropin beta subunit 8 protein-coding 28788 chr8 142403218 142403315 + 0 NA promoter-TSS (NM_145003) promoter-TSS (NM_145003) -17 NM_145003 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 12908 chr17 69327046 69327200 + 0 NA promoter-TSS (NM_172232) promoter-TSS (NM_172232) 59 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625 ATP binding cassette subfamily A member 5 protein-coding 23664 chr5 167723413 167723497 + 0 NA intron (NM_001122679, intron 2 of 28) L2a|LINE|L2 -31481 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 26227 chr7 47651531 47651635 + 0 NA Intergenic Intergenic -3661 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 27208 chr7 149422350 149422511 + 0 NA Intergenic CpG 38532 NM_015694 27153 Hs.38512 NM_015694 ENSG00000196453 ZNF777 - zinc finger protein 777 protein-coding 9668 chr14 100214513 100214617 + 0 NA Intergenic CpG -24200 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 24545 chr6 42045842 42045946 + 0 NA intron (NM_001287434, intron 1 of 4) intron (NM_001287434, intron 1 of 4) 3000 NM_001136126 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 18766 chr22 29799317 29799491 + 0 NA intron (NM_001242906, intron 14 of 18) intron (NM_001242906, intron 14 of 18) 32035 NM_001003684 29796 Hs.284292 NM_013387 ENSG00000184076 UQCR10 HSPC051|HSPC119|HSPC151|QCR9|UCCR7.2|UCRC ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 15824 chr2 74406991 74407095 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 10674 NM_001145054 388963 Hs.445377 NM_001145054 ENSG00000159239 C2orf81 hCG40743 chromosome 2 open reading frame 81 protein-coding 29108 chr9 38681959 38682014 + 0 NA Intergenic Intergenic 60898 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 28063 chr8 79020993 79021097 + 0 NA Intergenic Intergenic -215522 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 16572 chr2 162914055 162914097 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -75329 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 2469 chr1 204708677 204708781 + 0 NA Intergenic Intergenic -23260 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 18814 chr22 31943919 31944048 + 0 NA promoter-TSS (NM_003405) promoter-TSS (NM_003405) -510 NM_003405 7533 Hs.226755 NM_003405 ENSG00000128245 YWHAH YWHA1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta protein-coding 3317 chr10 14573740 14573873 + 0 NA intron (NM_001282695, intron 2 of 5) MSTD|LTR|ERVL-MaLR -1433 NM_001320735 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 27764 chr8 46125605 46125728 + 0 NA Intergenic HERV3-int|LTR|ERV1 -715220 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 30819 chrX 71543452 71543518 + 0 NA intron (NM_181673, intron 3 of 21) intron (NM_181673, intron 3 of 21) 10423 NM_181672 8473 Hs.405410 NM_003605 ENSG00000147162 OGT HINCUT-1|HRNT1|O-GLCNAC O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 2594 chr1 210400676 210400780 + 0 NA intron (NM_001122834, intron 5 of 11) intron (NM_001122834, intron 5 of 11) 71432 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 3966 chr10 79150102 79150206 + 0 NA intron (NM_020338, intron 3 of 24) intron (NM_020338, intron 3 of 24) 81119 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger MIZ-type containing 1 protein-coding 29203 chr9 72039148 72039252 + 0 NA Intergenic Intergenic 21405 NM_001128618 138240 Hs.371235 NM_001128618 ENSG00000204669 C9orf57 - chromosome 9 open reading frame 57 protein-coding 28440 chr8 112674484 112674588 + 0 NA intron (NM_198123, intron 16 of 70) intron (NM_198123, intron 16 of 70) 31043 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 20004 chr3 120417384 120417488 + 0 NA intron (NM_007085, intron 2 of 10) intron (NM_007085, intron 2 of 10) -21707 NR_029584 406975 NR_029584 ENSG00000163430 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 7743 chr12 120195021 120195103 + 0 NA promoter-TSS (NM_006836) promoter-TSS (NM_006836) -352 NM_006836 10985 Hs.298716 NM_006836 ENSG00000089154 GCN1 GCN1L|GCN1L1|PRIC295 GCN1, eIF2 alpha kinase activator homolog protein-coding 25215 chr6 138231404 138231508 + 0 NA intron (NM_020340, intron 5 of 33) MIR|SINE|MIR -12966 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 2124 chr1 177946014 177946118 + 0 NA intron (NM_033127, intron 14 of 25) intron (NM_033127, intron 14 of 25) 23849 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 6104 chr11 113384784 113384812 + 0 NA Intergenic Intergenic -2993 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2 ankyrin repeat and kinase domain containing 1 protein-coding 6755 chr12 25924839 25924993 + 0 NA Intergenic Intergenic 32669 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 atnisense RNA 1 ncRNA 31207 chrY 10776453 10776599 + 0 NA Intergenic (CCATT)n|Simple_repeat|Simple_repeat 865728 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 7594 chr12 107014151 107014304 + 0 NA intron (NM_004075, intron 2 of 12) intron (NM_004075, intron 2 of 12) -27061 NM_001033050 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 14555 chr19 45443605 45443717 + 0 NA Intergenic CpG 7007 NR_106736 102464836 NR_106736 ENSG00000275726 MIR6088 hsa-mir-6088 microRNA 6088 ncRNA 3622 chr10 43606424 43606528 + 0 NA promoter-TSS (NM_001318142) promoter-TSS (NM_001318142) 69 NM_001318140 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 19842 chr3 109642242 109642341 + 0 NA Intergenic Intergenic 39463 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 11118 chr16 22190500 22190628 + 0 NA Intergenic CpG -15707 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 29151 chr9 69961877 69961981 + 0 NA Intergenic Intergenic -81652 NR_125850 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 21974 chr4 164536951 164537114 + 0 NA Intergenic Intergenic -153777 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 989 chr1 61606052 61606156 + 0 NA Intergenic Intergenic -48138 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 6668 chr12 14774228 14774368 + 0 NA promoter-TSS (NM_177925) promoter-TSS (NM_177925) -38 NM_177925 55766 Hs.524280 NM_018267 ENSG00000246705 H2AFJ H2AJ H2A histone family member J protein-coding 24860 chr6 83271481 83271585 + 0 NA intron (NM_002395, intron 6 of 13) intron (NM_002395, intron 6 of 13) -77597 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 16795 chr2 187553288 187553392 + 0 NA intron (NM_001329239, intron 1 of 9) intron (NM_001329239, intron 1 of 9) 1165 NM_001329240 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 26910 chr7 121084834 121084938 + 0 NA intron (NM_001105533, intron 4 of 17) intron (NM_001105533, intron 4 of 17) 95495 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 2945 chr1 231626503 231626557 + 0 NA promoter-TSS (NM_001164541) promoter-TSS (NM_001164541) -285 NM_001164544 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 disrupted in schizophrenia 1 protein-coding 17529 chr20 5610973 5611138 + 0 NA promoter-TSS (NM_019593) promoter-TSS (NM_019593) -29 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 8799 chr14 31865567 31865703 + 0 NA Intergenic L1PB1|LINE|L1 151066 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|huInd1 nucleotide binding protein like protein-coding 4673 chr11 762832 762979 + 0 NA intron (NM_006755, intron 4 of 7) intron (NM_006755, intron 4 of 7) 14597 NM_001318821 347862 Hs.218362 NM_182612 ENSG00000177225 PDDC1 - Parkinson disease 7 domain containing 1 protein-coding 6533 chr12 6851306 6851456 + 0 NA promoter-TSS (NM_003481) promoter-TSS (NM_003481) 549 NM_031299 83461 Hs.524216 NM_031299 ENSG00000111665 CDCA3 GRCC8|TOME-1 cell division cycle associated 3 protein-coding 29411 chr9 84969246 84969367 + 0 NA intron (NM_001018064, intron 15 of 16) intron (NM_001018064, intron 15 of 16) 298929 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 20420 chr3 152258554 152258665 + 0 NA Intergenic Intergenic -9859 NM_001314057 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 24922 chr6 90587222 90587340 + 0 NA promoter-TSS (NM_145333) promoter-TSS (NM_145333) 20 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 21909 chr4 152326000 152326060 + 0 NA exon (NM_018315, exon 9 of 11) exon (NM_018315, exon 9 of 11) -11625 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 pseudo 3511 chr10 30392697 30392801 + 0 NA Intergenic Intergenic -20842 NR_120609 729668 Hs.652158 NR_003524 GOLGA2P6 - golgin A2 pseudogene 6 pseudo 7684 chr12 113358512 113358606 + 0 NA promoter-TSS (NM_001159727) promoter-TSS (NM_001159727) -7 NM_001159727 196463 Hs.115896 NM_173542 ENSG00000151176 PLBD2 P76 phospholipase B domain containing 2 protein-coding 29869 chr9 111631218 111631368 + 0 NA promoter-TSS (NM_001015882) promoter-TSS (NM_001015882) -59 NR_037148 548645 Hs.534196 NM_001015882 ENSG00000059769 DNAJC25 bA16L21.2.1 DnaJ heat shock protein family (Hsp40) member C25 protein-coding 7305 chr12 77925613 77925735 + 0 NA intron (NM_014903, intron 1 of 38) intron (NM_014903, intron 1 of 38) 94385 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 31111 chrX 139078043 139078097 + 0 NA intron (NM_001139501, intron 2 of 7) (TTTG)n|Simple_repeat|Simple_repeat 126953 NM_001139498 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2 fibroblast growth factor 13 protein-coding 11746 chr16 82629708 82629812 + 0 NA intron (NM_001257, intron 1 of 13) intron (NM_001257, intron 1 of 13) 2966 NM_001257 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 9791 chr15 23039654 23039758 + 0 NA promoter-TSS (NM_052903) promoter-TSS (NM_052903) -33 NM_001102610 114791 Hs.533898 NM_052903 ENSG00000275835 TUBGCP5 GCP5 tubulin gamma complex associated protein 5 protein-coding 4843 chr11 12167282 12167400 + 0 NA intron (NR_144420, intron 3 of 27) intron (NR_144420, intron 3 of 27) 3658 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 23485 chr5 149474455 149474542 + 0 NA Intergenic Intergenic 43852 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 21312 chr4 41216467 41216589 + 0 NA Intergenic CpG -1910 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 19662 chr3 72124125 72124143 + 0 NA Intergenic Intergenic -23679 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 8609 chr13 110347820 110347924 + 0 NA intron (NM_001846, intron 3 of 47) intron (NM_001846, intron 3 of 47) 6914 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 22106 chr4 185204083 185204187 + 0 NA promoter-TSS (NM_020827) promoter-TSS (NM_020827) -102 NM_001317781 83891 Hs.369091 NM_031953 ENSG00000109762 SNX25 MSTP043|SBBI31 sorting nexin 25 protein-coding 21376 chr4 54930350 54930454 + 0 NA Intergenic Intergenic 195193 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 12945 chr17 72456100 72456236 + 0 NA intron (NR_137281, intron 1 of 4) MIRc|SINE|MIR 113357 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 13149 chr17 81977514 81977668 + 0 NA promoter-TSS (NM_001251888) promoter-TSS (NM_001251888) 41 NM_001251888 79058 Hs.298351 NM_024083 ENSG00000169696 ASPSCR1 ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9 ASPSCR1, UBX domain containing tether for SLC2A4 protein-coding 6528 chr12 6724027 6724113 + 0 NA promoter-TSS (NM_016319) promoter-TSS (NM_016319) 86 NM_016319 50813 Hs.530823 NM_016319 ENSG00000111652 COPS7A CSN7|CSN7A|SGN7a COP9 signalosome subunit 7A protein-coding 30096 chr9 124834756 124834860 + 0 NA Intergenic MIRc|SINE|MIR -18609 NM_001276376 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 19383 chr3 39383517 39383621 + 0 NA 5' UTR (NM_017875, exon 1 of 7) 5' UTR (NM_017875, exon 1 of 7) 245 NM_017875 54977 Hs.369615 NM_017875 ENSG00000144659 SLC25A38 SIDBA2 solute carrier family 25 member 38 protein-coding 8055 chr13 30465881 30466061 + 0 NA promoter-TSS (NM_002128) promoter-TSS (NM_002128) -6 NM_002128 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 13182 chr17 82787519 82787633 + 0 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 35512 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 23982 chr6 7725978 7726092 + 0 NA promoter-TSS (NM_001718) promoter-TSS (NM_001718) -64 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 5402 chr11 63614314 63614442 + 0 NA promoter-TSS (NM_007069) promoter-TSS (NM_007069) 59 NM_007069 11145 Hs.502775 NM_007069 ENSG00000176485 PLA2G16 AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 phospholipase A2 group XVI protein-coding 20888 chr3 187878876 187878980 + 0 NA Intergenic Intergenic 97479 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 1187 chr1 84574337 84574493 + 0 NA promoter-TSS (NM_004388) promoter-TSS (NM_004388) 65 NM_004388 1486 Hs.513557 NM_004388 ENSG00000117151 CTBS CTB chitobiase protein-coding 21070 chr3 197372340 197372444 + 0 NA Intergenic MIR3|SINE|MIR -73120 NM_001290983 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs large MAGUK scaffold protein 1 protein-coding 13158 chr17 82206364 82206510 + 0 NA intron (NM_198082, intron 1 of 16) MER21A|LTR|ERVL 6376 NM_198082 284001 Hs.631724 NM_152675 ENSG00000176155 CCDC57 - coiled-coil domain containing 57 protein-coding 22221 chr5 10627965 10628059 + 0 NA intron (NM_001164440, intron 2 of 3) intron (NM_001164440, intron 2 of 3) 63689 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 26366 chr7 68321057 68321230 + 0 NA Intergenic MIRb|SINE|MIR 300890 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 8620 chr13 110712922 110713000 + 0 NA promoter-TSS (NM_198218) promoter-TSS (NM_198218) -302 NM_198218 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 26350 chr7 66602229 66602238 + 0 NA Intergenic LTR88a|LTR|Gypsy? -9826 NR_111973 493754 Hs.732409 NR_002933 GS1-124K5.11 - RAB guanine nucleotide exchange factor 1 pseudogene pseudo 8693 chr14 21917720 21917992 + 0 NA Intergenic Intergenic -246839 NM_001317107 26687 NM_001317107 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 28471 chr8 117609203 117609307 + 0 NA Intergenic Intergenic 88542 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 8769 chr14 24595566 24595665 + 0 NA Intergenic L1PB1|LINE|L1 14105 NM_001270780 2999 Hs.348264 NM_033423 ENSG00000100450 GZMH CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2 granzyme H protein-coding 5452 chr11 65013663 65013767 + 0 NA promoter-TSS (NR_037650) promoter-TSS (NR_037650) -398 NM_001667 402 Hs.502836 NM_001667 ENSG00000213465 ARL2 ARFL2 ADP ribosylation factor like GTPase 2 protein-coding 3899 chr10 73785211 73785338 + 0 NA promoter-TSS (NM_001242487) promoter-TSS (NM_001242487) -350 NM_001242487 23053 Hs.65135 NM_015037 ENSG00000214655 ZSWIM8 KIAA0913 zinc finger SWIM-type containing 8 protein-coding 15587 chr2 56288122 56288226 + 0 NA intron (NM_001080433, intron 2 of 5) intron (NM_001080433, intron 2 of 5) -102404 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 16186 chr2 114192521 114192625 + 0 NA Intergenic Intergenic -212589 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 3104 chr1 244104513 244104617 + 0 NA Intergenic L2a|LINE|L2 51360 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 3961 chr10 78757004 78757082 + 0 NA Intergenic Intergenic 310405 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 26627 chr7 95435027 95435165 + 0 NA promoter-TSS (NM_000305) promoter-TSS (NM_000305) -24 NM_001018161 5445 Hs.514420 NM_000305 ENSG00000105854 PON2 - paraoxonase 2 protein-coding 16867 chr2 196331286 196331390 + 0 NA intron (NM_020760, intron 4 of 28) intron (NM_020760, intron 4 of 28) 30786 NM_001304840 57520 Hs.654742 NM_020760 ENSG00000138411 HECW2 NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 26075 chr7 38164533 38164603 + 0 NA Intergenic L1MB2|LINE|L1 -13638 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 23644 chr5 160316108 160316212 + 0 NA intron (NR_131769, intron 1 of 7) intron (NR_131769, intron 1 of 7) -3560 NM_024565 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 23518 chr5 150492675 150492832 + 0 NA Intergenic Intergenic -5025 NM_001301063 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 16217 chr2 119679131 119679235 + 0 NA promoter-TSS (NM_001105198) promoter-TSS (NM_001105198) 16 NM_001105199 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 16022 chr2 100903915 100904019 + 0 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 73194 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 18614 chr22 17872620 17872763 + 0 NA intron (NM_001122731, intron 15 of 19) intron (NM_001122731, intron 15 of 19) 34195 NM_001122731 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 18089 chr20 45363382 45363510 + 0 NA intron (NR_003189, intron 1 of 5) CpG 277 NR_003189 767557 Hs.730643 NR_003189 ENSG00000254806 SYS1-DBNDD2 C20orf169-DBNDD2 SYS1-DBNDD2 readthrough (NMD candidate) ncRNA 30611 chrX 37998972 37999076 + 0 NA Intergenic Charlie10|DNA|hAT-Charlie -7558 NM_001163335 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 27382 chr8 10716211 10716315 + 0 NA Intergenic Intergenic 14311 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box 7 protein-coding 17453 chr20 1877038 1877115 + 0 NA Intergenic Intergenic -17091 NM_001330728 140885 Hs.581021 NM_080792 ENSG00000198053 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal regulatory protein alpha protein-coding 29674 chr9 98426404 98426508 + 0 NA intron (NM_005458, intron 7 of 18) intron (NM_005458, intron 7 of 18) -170735 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 22877 chr5 91314373 91314477 + 0 NA promoter-TSS (NR_103548) promoter-TSS (NR_103548) -23 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 25062 chr6 117602523 117602673 + 0 NA promoter-TSS (NM_020399) promoter-TSS (NM_020399) -56 NM_020399 57120 Hs.191539 NM_020399 ENSG00000047932 GOPC CAL|FIG|GOPC1|PIST|dJ94G16.2 golgi associated PDZ and coiled-coil motif containing protein-coding 22412 chr5 39224366 39224451 + 0 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) -4830 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 20772 chr3 182212586 182212692 + 0 NA Intergenic Intergenic 260275 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 19253 chr3 23620684 23620830 + 0 NA Intergenic Intergenic -185136 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 9907 chr15 39430114 39430218 + 0 NA Intergenic Intergenic -150913 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 2600 chr1 211258998 211259100 + 0 NA promoter-TSS (NM_001136225) promoter-TSS (NM_001136225) -317 NM_001136224 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 24615 chr6 44475820 44475862 + 0 NA Intergenic Intergenic 40200 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 5749 chr11 83045034 83045187 + 0 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) -3512 NR_033347 100379250 Hs.725115 NR_033347 ENSG00000207221 SNORA70E U70E small nucleolar RNA, H/ACA box 70E snoRNA 15847 chr2 75292995 75293079 + 0 NA Intergenic Intergenic -93518 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 1828 chr1 155934402 155934537 + 0 NA promoter-TSS (NM_014949) promoter-TSS (NM_014949) -27 NM_014949 22889 Hs.24656 NM_014949 ENSG00000132680 KIAA0907 BLOM7|SNORA80EHG KIAA0907 protein-coding 27449 chr8 17922628 17922779 + 0 NA promoter-TSS (NM_001315507) promoter-TSS (NM_001315507) -154 NM_006197 5108 Hs.491148 NM_006197 ENSG00000078674 PCM1 PTC4|RET/PCM-1 pericentriolar material 1 protein-coding 19751 chr3 99648210 99648323 + 0 NA intron (NM_020351, intron 1 of 3) MIRb|SINE|MIR 9670 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 3006 chr1 235068272 235068403 + 0 NA non-coding (NR_027454, exon 2 of 4) non-coding (NR_027454, exon 2 of 4) 1481 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 16478 chr2 152717415 152717557 + 0 NA promoter-TSS (NM_017892) promoter-TSS (NM_017892) -25 NM_017892 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 29206 chr9 72210704 72210808 + 0 NA exon (NM_001242507, exon 4 of 14) exon (NM_001242507, exon 4 of 14) 61405 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GUANASE|NEDASIN guanine deaminase protein-coding 29065 chr9 35072661 35072807 + 0 NA promoter-TSS (NM_007126) promoter-TSS (NM_007126) 8 NM_007126 7415 Hs.529782 NM_007126 ENSG00000165280 VCP ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 valosin containing protein protein-coding 13556 chr18 49609558 49609623 + 0 NA Intergenic Intergenic 47559 NM_001308006 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 10045 chr15 48331359 48331491 + 0 NA promoter-TSS (NM_001025248) promoter-TSS (NM_001025248) 1 NM_001025248 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 70 chr1 5992448 5992597 + 0 NA promoter-TSS (NM_015102) promoter-TSS (NM_015102) -49 NM_001291593 261734 Hs.462348 NM_015102 ENSG00000131697 NPHP4 POC10|SLSN4 nephrocystin 4 protein-coding 15461 chr2 44549250 44549354 + 0 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 187398 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 27116 chr7 140479392 140479535 + 0 NA non-coding (NR_117084, exon 1 of 6) non-coding (NR_117084, exon 1 of 6) 106 NM_001145125 23608 Hs.744883 NM_013446 ENSG00000133606 MKRN1 RNF61 makorin ring finger protein 1 protein-coding 18839 chr22 36124113 36124131 + 0 NA Intergenic Intergenic 36807 NM_145640 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 166 chr1 11272911 11272942 + 0 NA promoter-TSS (NM_013319) promoter-TSS (NM_013319) -272 NM_001330349 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 28519 chr8 119855635 119855748 + 0 NA exon (NM_024094, exon 1 of 9) exon (NM_024094, exon 1 of 9) 239 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 23575 chr5 154405272 154405411 + 0 NA intron (NM_198321, intron 8 of 11) CpG 40481 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 1578 chr1 116570435 116570561 + 0 NA intron (NM_001144822, intron 1 of 4) CpG 595 NR_026665 965 Hs.34341 NM_001779 ENSG00000116815 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 11268 chr16 31459852 31460006 + 0 NA exon (NM_001288767, exon 3 of 8) exon (NM_001288767, exon 3 of 8) 933 NM_024742 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 6728 chr12 22275982 22276135 + 0 NA intron (NM_003034, intron 2 of 4) intron (NM_003034, intron 2 of 4) 58656 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 22970 chr5 105883167 105883242 + 0 NA Intergenic Intergenic 783730 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 466 chr1 27830677 27830829 + 0 NA promoter-TSS (NM_014110) promoter-TSS (NM_014110) 12 NM_014110 5511 Hs.533474 NM_002713 ENSG00000117751 PPP1R8 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 protein phosphatase 1 regulatory subunit 8 protein-coding 26320 chr7 55964394 55964498 + 0 NA promoter-TSS (NM_001483) promoter-TSS (NM_001483) -131 NM_001202469 2631 Hs.591069 NM_001483 ENSG00000146729 GBAS NIPSNAP2 glioblastoma amplified sequence protein-coding 30803 chrX 69615835 69615939 + 0 NA promoter-TSS (NM_001399) promoter-TSS (NM_001399) -180 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 7183 chr12 58920235 58920297 + 0 NA promoter-TSS (NM_001136051) promoter-TSS (NM_001136051) 272 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 13019 chr17 75723330 75723467 + 0 NA intron (NM_001005731, intron 1 of 38) intron (NM_001005731, intron 1 of 38) -1298 NM_001005619 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 3717 chr10 58412552 58412589 + 0 NA Intergenic Intergenic 27427 NM_001270782 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 30617 chrX 39159496 39159511 + 0 NA Intergenic Intergenic 167859 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 6782 chr12 27524072 27524096 + 0 NA promoter-TSS (NM_001198916) promoter-TSS (NM_001198916) -28 NM_177444 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 8192 chr13 44141889 44142062 + 0 NA promoter-TSS (NR_104064) promoter-TSS (NR_104064) -353 NR_104064 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 17691 chr20 18137909 18137917 + 0 NA promoter-TSS (NM_001164811) promoter-TSS (NM_001164811) 58 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 homolog protein-coding 29088 chr9 36400343 36400465 + 0 NA promoter-TSS (NM_022781) promoter-TSS (NM_022781) -105 NM_194329 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 2196 chr1 182789708 182789852 + 0 NA 5' UTR (NM_001200051, exon 1 of 11) 5' UTR (NM_001200051, exon 1 of 11) 331 NM_001200050 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 23617 chr5 158456815 158456919 + 0 NA Intergenic Intergenic -47094 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LOC101927697 - uncharacterized LOC101927697 ncRNA 14465 chr19 40716840 40716956 + 0 NA promoter-TSS (NM_025194) promoter-TSS (NM_025194) -13 NM_024876 79934 Hs.130712 NM_024876 ENSG00000123815 COQ8B ADCK4|NPHS9 coenzyme Q8B protein-coding 1323 chr1 93779787 93779887 + 0 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -66995 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 7296 chr12 77102903 77102949 + 0 NA Intergenic Intergenic -37346 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 25777 chr7 18866763 18866899 + 0 NA intron (NM_178425, intron 20 of 24) intron (NM_178425, intron 20 of 24) 250841 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 22341 chr5 32585465 32585581 + 0 NA promoter-TSS (NM_006713) promoter-TSS (NM_006713) 24 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 homolog, transcriptional regulator protein-coding 1455 chr1 108746493 108746623 + 0 NA promoter-TSS (NM_007269) promoter-TSS (NM_007269) -105 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 29667 chr9 98223315 98223471 + 0 NA intron (NR_051978, intron 4 of 11) intron (NR_051978, intron 4 of 11) 5824 NR_106913 102465514 NR_106913 ENSG00000278412 MIR6854 hsa-mir-6854 microRNA 6854 ncRNA 19428 chr3 44338344 44338489 + 0 NA promoter-TSS (NM_001029839) promoter-TSS (NM_001029839) -36 NM_001029839 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T-cell activation inhibitor, mitochondrial protein-coding 23598 chr5 157603449 157603553 + 0 NA Intergenic Intergenic -27678 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 18095 chr20 45489202 45489306 + 0 NA Intergenic MER41B|LTR|ERV1 19500 NM_006103 10406 Hs.2719 NM_006103 ENSG00000101443 WFDC2 EDDM4|HE4|WAP5|dJ461P17.6 WAP four-disulfide core domain 2 protein-coding 19498 chr3 49539996 49539996 + 0 NA Intergenic CpG 14370 NR_038866 100132677 Hs.435651 NR_038866 ENSG00000226913 BSN-AS2 - BSN antisense RNA 2 (head to head) ncRNA 4658 chr11 450144 450294 + 0 NA promoter-TSS (NM_001329544) promoter-TSS (NM_001329544) -61 NR_138046 81490 Hs.12851 NM_030783 ENSG00000174915 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 28073 chr8 80023721 80023852 + 0 NA intron (NM_014018, intron 1 of 2) intron (NM_014018, intron 1 of 2) 6485 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 5638 chr11 73194759 73194863 + 0 NA Intergenic Intergenic -23487 NM_176072 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 24073 chr6 13711864 13711968 + 0 NA promoter-TSS (NM_005493) promoter-TSS (NM_005493) -352 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 30070 chr9 122913254 122913389 + 0 NA promoter-TSS (NM_006626) promoter-TSS (NM_006626) 7 NM_006626 10773 Hs.654596 NM_006626 ENSG00000186130 ZBTB6 ZID|ZNF482 zinc finger and BTB domain containing 6 protein-coding 30891 chrX 102769045 102769211 + 0 NA promoter-TSS (NR_038988) promoter-TSS (NR_038988) -39 NR_038988 100287765 Hs.687084 NR_038988 ENSG00000223546 LINC00630 LL0XNC01-157D4.1|LL0XNC01-237H1.2 long intergenic non-protein coding RNA 630 ncRNA 3560 chr10 33927486 33927590 + 0 NA Intergenic Intergenic -154858 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 1134 chr1 76074576 76074733 + 0 NA promoter-TSS (NM_001160011) promoter-TSS (NM_001160011) -50 NM_152996 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 10191 chr15 59170350 59170558 + 0 NA TTS (NR_031750) TTS (NR_031750) 808 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 3853 chr10 71512880 71513032 + 0 NA intron (NM_022124, intron 6 of 67) MIR3|SINE|MIR -1036 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 19238 chr3 20054581 20054685 + 0 NA intron (NM_003884, intron 1 of 17) intron (NM_003884, intron 1 of 17) 14601 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 13577 chr18 50868743 50868847 + 0 NA Intergenic Intergenic -10267 NM_001168335 4200 Hs.233119 NM_002396 ENSG00000082212 ME2 ODS1 malic enzyme 2 protein-coding 4455 chr10 118742222 118742326 + 0 NA intron (NM_153810, intron 1 of 8) intron (NM_153810, intron 1 of 8) 12972 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 5595 chr11 69524638 69524742 + 0 NA Intergenic Intergenic 39129 NR_120545 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 29765 chr9 106905400 106905492 + 0 NA intron (NM_001347997, intron 1 of 12) L1PB1|LINE|L1 42349 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 8709 chr14 22853255 22853264 + 0 NA Intergenic Intergenic 16726 NM_004995 4323 Hs.2399 NM_004995 ENSG00000157227 MMP14 MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS matrix metallopeptidase 14 protein-coding 29243 chr9 73611162 73611266 + 0 NA Intergenic LTR47A|LTR|ERVL 459483 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 28436 chr8 110697730 110697834 + 0 NA Intergenic AluJr|SINE|Alu 329651 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 28767 chr8 140645967 140646071 + 0 NA Intergenic Charlie2a|DNA|hAT-Charlie -10472 NM_001164623 27161 Hs.743313 NM_012154 ENSG00000123908 AGO2 EIF2C2|Q10 argonaute 2, RISC catalytic component protein-coding 19600 chr3 58471447 58471551 + 0 NA Intergenic Intergenic -20597 NM_001128214 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 10202 chr15 59372794 59372930 + 0 NA promoter-TSS (NM_004998) promoter-TSS (NM_004998) 10 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 5122 chr11 33774502 33774698 + 0 NA promoter-TSS (NM_012175) promoter-TSS (NM_012175) -75 NM_033406 26273 Hs.406787 NM_012175 ENSG00000110429 FBXO3 FBA|FBX3 F-box protein 3 protein-coding 27704 chr8 38231620 38231751 + 0 NA promoter-TSS (NM_001164232) promoter-TSS (NM_001164232) 194 NM_001164234 23259 Hs.434966 NM_015214 ENSG00000085788 DDHD2 SAMWD1|SPG54|iPLA(1)gamma DDHD domain containing 2 protein-coding 22440 chr5 40755931 40756043 + 0 NA promoter-TSS (NM_012382) promoter-TSS (NM_012382) -17 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 8433 chr13 87331268 87331407 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB 287403 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 2716 chr1 218874382 218874518 + 0 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 299338 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 (head to head) ncRNA 30439 chrX 1392209 1392364 + 0 NA promoter-TSS (NM_001636).2 promoter-TSS (NM_001636).2 -140 NM_001636 293 Hs.350927 NM_001636 ENSG00000169100 SLC25A6 AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y solute carrier family 25 member 6 protein-coding 19419 chr3 42804510 42804668 + 0 NA promoter-TSS (NM_001099668) promoter-TSS (NM_001099668) -54 NM_001099669 25994 Hs.593134 NM_014056 ENSG00000181061 HIGD1A HIG1|RCF1a HIG1 hypoxia inducible domain family member 1A protein-coding 26679 chr7 99408875 99409018 + 0 NA promoter-TSS (NM_014891) promoter-TSS (NM_014891) -32 NM_003910 8896 Hs.380233 NM_003910 ENSG00000106245 BUD31 Cwc14|EDG-2|EDG2|G10|YCR063W|fSAP17 BUD31 homolog protein-coding 23115 chr5 123511966 123512100 + 0 NA promoter-TSS (NM_001270574) promoter-TSS (NM_001270574) -66 NM_001270574 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 30971 chrX 110318027 110318169 + 0 NA promoter-TSS (NM_015365) promoter-TSS (NM_015365) 54 NM_015365 9949 Hs.656243 NM_015365 ENSG00000101935 AMMECR1 AMMERC1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding 12890 chr17 67717639 67717783 + 0 NA promoter-TSS (NM_001303272) promoter-TSS (NM_001303272) -122 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 23019 chr5 111997904 111998008 + 0 NA intron (NR_046678, intron 3 of 3) intron (NR_046678, intron 3 of 3) -21025 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 23010 chr5 111224178 111224282 + 0 NA promoter-TSS (NM_001744) promoter-TSS (NM_001744) -7 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|caMK calcium/calmodulin dependent protein kinase IV protein-coding 1648 chr1 147084901 147085114 + 0 NA promoter-TSS (NR_121645) promoter-TSS (NR_121645) -251 NR_121645 101447996 NR_121645 RNVU1-8 RNU1-145|vU1.8 RNA, variant U1 small nuclear 8 snRNA 29784 chr9 107712515 107712597 + 0 NA Intergenic L2c|LINE|L2 -222836 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 28277 chr8 98835079 98835183 + 0 NA intron (NM_001256312, intron 3 of 12) LTR23|LTR|ERV1 -9450 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 3596 chr10 40447255 40447407 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1750735 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 21459 chr4 75673450 75673591 + 0 NA promoter-TSS (NM_012297) promoter-TSS (NM_012297) -37 NM_203505 9908 Hs.303676 NM_012297 ENSG00000138757 G3BP2 - G3BP stress granule assembly factor 2 protein-coding 20681 chr3 174973655 174973759 + 0 NA intron (NM_207015, intron 1 of 13) Tigger3a|DNA|TcMar-Tigger 114386 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 10408 chr15 72118216 72118242 + 0 NA promoter-TSS (NM_001172111) promoter-TSS (NM_001172111) -61 NM_001172111 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO/sentrin peptidase family member, NEDD8 specific protein-coding 2266 chr1 192489887 192490000 + 0 NA Intergenic Intergenic -85784 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 20665 chr3 172523479 172523583 + 0 NA promoter-TSS (NM_003810) promoter-TSS (NM_003810) -24 NM_001190942 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 14027 chr19 7903577 7903731 + 0 NA promoter-TSS (NM_001297556) promoter-TSS (NM_001297556) -126 NM_001297555 5609 Hs.531754 NM_145185 ENSG00000076984 MAP2K7 JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4 mitogen-activated protein kinase kinase 7 protein-coding 6043 chr11 110087132 110087180 + 0 NA Intergenic Intergenic -6205 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 2915 chr1 229342315 229342419 + 0 NA exon (NM_145257, exon 2 of 4) exon (NM_145257, exon 2 of 4) 574 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 7671 chr12 112419373 112419464 + 0 NA promoter-TSS (NM_001320141) promoter-TSS (NM_001320141) 520 NM_002834 5781 Hs.506852 NM_002834 ENSG00000179295 PTPN11 BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 protein tyrosine phosphatase, non-receptor type 11 protein-coding 29904 chr9 113152901 113153005 + 0 NA intron (NM_001860, intron 1 of 3) intron (NM_001860, intron 1 of 3) 1995 NM_001860 1318 Hs.24030 NM_001860 ENSG00000136867 SLC31A2 COPT2|CTR2|hCTR2 solute carrier family 31 member 2 protein-coding 19891 chr3 112643068 112643172 + 0 NA Intergenic Intergenic -1977 NM_199511 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 5408 chr11 63803219 63803256 + 0 NA Intergenic Intergenic -10137 NM_138471 144097 Hs.502793 NM_138471 ENSG00000168005 C11orf84 - chromosome 11 open reading frame 84 protein-coding 4963 chr11 18588655 18588775 + 0 NA promoter-TSS (NM_001040697) promoter-TSS (NM_001040697) 31 NM_001261384 55293 Hs.407991 NM_018314 ENSG00000151116 UEVLD ATTP|UEV3 UEV and lactate/malate dehyrogenase domains protein-coding 16166 chr2 113072699 113072765 + 0 NA 5' UTR (NM_173161, exon 2 of 5) 5' UTR (NM_173161, exon 2 of 5) 414 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 (theta) protein-coding 5345 chr11 61581413 61581567 + 0 NA promoter-TSS (NM_001252065) promoter-TSS (NM_001252065) -618 NM_001252065 9066 Hs.131188 NM_004200 ENSG00000011347 SYT7 IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII synaptotagmin 7 protein-coding 30834 chrX 74119365 74119469 + 0 NA intron (NR_028379, intron 5 of 6) L1P4b|LINE|L1 99044 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 722 chr1 41665444 41665548 + 0 NA intron (NM_001127714, intron 1 of 7) intron (NM_001127714, intron 1 of 7) -180813 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 22150 chr5 1542815 1542916 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -18888 NM_024830 79888 Hs.368853 NM_024830 ENSG00000153395 LPCAT1 AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT lysophosphatidylcholine acyltransferase 1 protein-coding 19363 chr3 38453678 38453782 + 0 NA promoter-TSS (NM_001106) promoter-TSS (NM_001106) -569 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 27882 chr8 56993918 56994027 + 0 NA promoter-TSS (NM_017813) promoter-TSS (NM_017813) -101 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 7704 chr12 116916802 116916906 + 0 NA intron (NM_153348, intron 1 of 10) MLT1H|LTR|ERVL-MaLR 5898 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 25905 chr7 26200937 26201041 + 0 NA promoter-TSS (NM_031243) promoter-TSS (NM_031243) -196 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 13395 chr18 31454220 31454324 + 0 NA intron (NM_001944, intron 1 of 15) intron (NM_001944, intron 1 of 15) 6503 NM_001944 1830 Hs.1925 NM_001944 ENSG00000134757 DSG3 CDHF6|PVA desmoglein 3 protein-coding 16255 chr2 122519993 122520086 + 0 NA Intergenic MER61E|LTR|ERV1 764494 NR_048557 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 29565 chr9 92974413 92974561 + 0 NA promoter-TSS (NM_033086) promoter-TSS (NM_033086) 51 NM_033086 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 26512 chr7 84025434 84025474 + 0 NA intron (NM_006080, intron 6 of 16) intron (NM_006080, intron 6 of 16) 169447 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 18511 chr21 36298261 36298374 + 0 NA Intergenic Intergenic -21872 NM_001320445 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 13986 chr19 5791122 5791240 + 0 NA promoter-TSS (NM_001161619) promoter-TSS (NM_001161619) 57 NM_020175 56931 Hs.284297 NM_020175 ENSG00000141994 DUS3L DUS3 dihydrouridine synthase 3 like protein-coding 6911 chr12 45216009 45216135 + 0 NA promoter-TSS (NM_001025356) promoter-TSS (NM_001025356) -66 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 PLEKHA9 pleckstrin homology domain containing A8 pseudogene 1 pseudo 14193 chr19 14690072 14690176 + 0 NA promoter-TSS (NM_001300912) promoter-TSS (NM_001300912) 66 NM_032433 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 30787 chrX 67780818 67780824 + 0 NA Intergenic MIR3|SINE|MIR 211980 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 15553 chr2 54330717 54330821 + 0 NA promoter-TSS (NM_001100396) promoter-TSS (NM_001100396) -165 NM_001100396 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 20038 chr3 122975401 122975580 + 0 NA intron (NR_046079, intron 1 of 22) intron (NR_046079, intron 1 of 22) 644 NM_001256347 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 26299 chr7 54946798 54946934 + 0 NA Intergenic Intergenic -72155 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 153 chr1 10496106 10496192 + 0 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 21203 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 9377 chr14 74881779 74881967 + 0 NA promoter-TSS (NM_001244883) promoter-TSS (NM_001244883) -18 NR_045209 1743 Hs.525459 NM_001933 ENSG00000119689 DLST DLTS dihydrolipoamide S-succinyltransferase protein-coding 2932 chr1 230863657 230863761 + 0 NA intron (NM_001136494, intron 3 of 5) intron (NM_001136494, intron 3 of 5) 4847 NM_032800 84886 Hs.520494 NM_032800 ENSG00000119280 C1orf198 - chromosome 1 open reading frame 198 protein-coding 27047 chr7 134512375 134512479 + 0 NA Intergenic MER39|LTR|ERV1 -15165 NM_020299 57016 Hs.116724 NM_020299 ENSG00000198074 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1 member B10 protein-coding 14846 chr19 57435230 57435358 + 0 NA promoter-TSS (NM_001023561) promoter-TSS (NM_001023561) -31 NM_001023561 388567 Hs.467358 NM_001023561 ENSG00000186230 ZNF749 - zinc finger protein 749 protein-coding 101 chr1 7539806 7539910 + 0 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -231411 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 4362 chr10 112137529 112137663 + 0 NA Intergenic Intergenic 46183 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 28798 chr8 142993474 142993627 + 0 NA intron (NR_026913, intron 1 of 1) MER4E|LTR|ERV1 -2278 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 26088 chr7 38909108 38909260 + 0 NA promoter-TSS (NM_080631) promoter-TSS (NM_080631) 16 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41, HOPS complex subunit protein-coding 22308 chr5 19126381 19126425 + 0 NA Intergenic Intergenic 759869 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 16916 chr2 200864621 200864760 + 0 NA promoter-TSS (NM_001162407) promoter-TSS (NM_001162407) 54 NR_027855 1195 Hs.433732 NM_004071 ENSG00000013441 CLK1 CLK|CLK/STY|STY CDC like kinase 1 protein-coding 9039 chr14 54665245 54665270 + 0 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -89531 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 3655 chr10 48288047 48288166 + 0 NA Intergenic Intergenic -13208 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 4012 chr10 85099265 85099369 + 0 NA Intergenic MIRb|SINE|MIR 99588 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 5752 chr11 83071836 83071854 + 0 NA promoter-TSS (NR_038903) promoter-TSS (NR_038903) 78 NM_001286060 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 7204 chr12 62934467 62934571 + 0 NA exon (NM_020700, exon 1 of 10) exon (NM_020700, exon 1 of 10) 366 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 16115 chr2 110106225 110106387 + 0 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) 10260 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T-cell differentiation protein like protein-coding 3536 chr10 32253391 32253495 + 0 NA Intergenic Intergenic 93605 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 21743 chr4 119212436 119212483 + 0 NA promoter-TSS (NM_019050) promoter-TSS (NM_019050) -168 NM_019050 54532 Hs.431081 NM_019050 ENSG00000145390 USP53 - ubiquitin specific peptidase 53 protein-coding 14484 chr19 41888062 41888103 + 0 NA exon (NM_199002, exon 2 of 29) exon (NM_199002, exon 2 of 29) 3703 NM_199002 9138 Hs.631550 NM_004706 ENSG00000076928 ARHGEF1 GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5 Rho guanine nucleotide exchange factor 1 protein-coding 20444 chr3 153286181 153286285 + 0 NA Intergenic Intergenic 124021 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 31179 chrX 154378929 154378948 + 0 NA promoter-TSS (NM_000117) promoter-TSS (NM_000117) -299 NM_000117 2010 Hs.522823 NM_000117 ENSG00000102119 EMD EDMD|LEMD5|STA emerin protein-coding 27960 chr8 65974017 65974042 + 0 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -47527 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 20979 chr3 192819278 192819374 + 0 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) -91727 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 18234 chr20 52889375 52889479 + 0 NA Intergenic L2a|LINE|L2 -82980 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 26887 chr7 116862310 116862414 + 0 NA promoter-TSS (NM_006136) promoter-TSS (NM_006136) -147 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line alpha subunit 2 protein-coding 13808 chr18 77114625 77114761 + 0 NA intron (NM_001025100, intron 1 of 3) intron (NM_001025100, intron 1 of 3) 18125 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 30155 chr9 127735253 127735415 + 0 NA promoter-TSS (NM_001085347) promoter-TSS (NM_001085347) 15 NM_001252021 27433 Hs.444106 NM_130459 ENSG00000160404 TOR2A TORP1 torsin family 2 member A protein-coding 31215 chrY 11333162 11333266 + 0 NA Intergenic CpG 1088376 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 19805 chr3 105611657 105611746 + 0 NA Intergenic LTR8B|LTR|ERV1 244988 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 18450 chr21 29024682 29024696 + 0 NA promoter-TSS (NM_006447) promoter-TSS (NM_006447) 72 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 25253 chr6 142946390 142946542 + 0 NA Intergenic CpG-24066 -1265 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 10176 chr15 58441113 58441211 + 0 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 9186 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 29319 chr9 78296979 78297133 + 0 NA promoter-TSS (NM_021154) promoter-TSS (NM_021154) -19 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 19483 chr3 48918746 48918840 + 0 NA promoter-TSS (NM_001317334) promoter-TSS (NM_001317334) -27 NM_001317333 10425 Hs.633601 NM_006321 ENSG00000177479 ARIH2 ARI2|TRIAD1 ariadne RBR E3 ubiquitin protein ligase 2 protein-coding 17621 chr20 11907195 11907365 + 0 NA intron (NM_001282550, intron 1 of 4) intron (NM_001282550, intron 1 of 4) -10585 NM_001282554 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 2510 chr1 206714794 206714921 + 0 NA intron (NM_032960, intron 1 of 9) intron (NM_032960, intron 1 of 9) 29837 NM_004759 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 mitogen-activated protein kinase-activated protein kinase 2 protein-coding 24251 chr6 27147018 27147044 + 0 NA promoter-TSS (NM_001312653) promoter-TSS (NM_001312653) -51 NM_080596 85235 Hs.352225 NM_080596 ENSG00000274997 HIST1H2AH H2A/S|H2AFALii|H2AH|dJ86C11.1 histone cluster 1 H2A family member h protein-coding 2458 chr1 204398568 204398702 + 0 NA Intergenic Intergenic 13182 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 11392 chr16 56194508 56194612 + 0 NA promoter-TSS (NR_026889) promoter-TSS (NR_026889) -35 NR_026889 26077 Hs.721567 NR_026889 ENSG00000261439 DKFZP434H168 - uncharacterized LOC26077 ncRNA 10183 chr15 58749947 58750081 + 0 NA promoter-TSS (NM_001320570) promoter-TSS (NM_001320570) -36 NM_001320570 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 29125 chr9 68705115 68705219 + 0 NA promoter-TSS (NM_003558) promoter-TSS (NM_003558) -247 NM_001278253 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 17117 chr2 219253341 219253445 + 0 NA non-coding (NR_003063, exon 1 of 4) non-coding (NR_003063, exon 1 of 4) 150 NR_003063 80086 Hs.664469 NR_003063 ENSG00000243910 TUBA4B TUBA4 tubulin alpha 4b pseudo 29343 chr9 79624319 79624480 + 0 NA intron (NM_001282749, intron 5 of 18) intron (NM_001282749, intron 5 of 18) 52626 NR_104239 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 7345 chr12 84728130 84728271 + 0 NA Intergenic MER65D|LTR|ERV1 184629 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 13905 chr19 2648632 2648724 + 0 NA intron (NM_052847, intron 1 of 4) intron (NM_052847, intron 1 of 4) 17963 NR_107004 102465838 NR_107004 ENSG00000277904 MIR7850 hsa-mir-7850 microRNA 7850 ncRNA 22350 chr5 33651065 33651169 + 0 NA intron (NM_001324512, intron 7 of 21) intron (NM_001324512, intron 7 of 21) 210341 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 29699 chr9 100098245 100098399 + 0 NA promoter-TSS (NM_014425) promoter-TSS (NM_014425) 730 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 20308 chr3 142578749 142578888 + 0 NA promoter-TSS (NM_001184) promoter-TSS (NM_001184) 8 NM_001184 545 Hs.271791 NM_001184 ENSG00000175054 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 17469 chr20 2627062 2627192 + 0 NA intron (NM_080751, intron 17 of 19) LTR3B|LTR|ERVK -25405 NM_006392 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 13107 chr17 80620071 80620132 + 0 NA intron (NM_020761, intron 1 of 33) MIR3|SINE|MIR 75276 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 22133 chr4 190181618 190181766 + 0 NA intron (NR_137167, intron 2 of 5) BSR/Beta|Satellite|Satellite 7918 NR_137167 100288687 Hs.728749 NM_001205218 ENSG00000260596 DUX4 DUX4L double homeobox 4 protein-coding 30926 chrX 106802506 106802656 + 0 NA promoter-TSS (NM_198881) promoter-TSS (NM_198881) -108 NM_198881 54885 Hs.351798 NM_017752 ENSG00000133138 TBC1D8B GRAMD8B TBC1 domain family member 8B protein-coding 1216 chr1 85495681 85495785 + 0 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) -30527 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 20849 chr3 185677304 185677322 + 0 NA intron (NR_138486, intron 7 of 15) L1MB2|LINE|L1 -35939 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 3879 chr10 72692010 72692169 + 0 NA promoter-TSS (NM_001270680) promoter-TSS (NM_001270680) -42 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 27961 chr8 65974183 65974263 + 0 NA Intergenic MLT1A1|LTR|ERVL-MaLR -47333 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 31185 chrX 154478829 154478933 + 0 NA exon (NM_006014, exon 1 of 3) exon (NM_006014, exon 1 of 3) 376 NM_006014 8270 Hs.444619 NM_006014 ENSG00000196976 LAGE3 CVG5|DXS9879E|DXS9951E|ESO3|ITBA2|Pcc1 L antigen family member 3 protein-coding 20631 chr3 170357575 170357701 + 0 NA promoter-TSS (NM_001145098) promoter-TSS (NM_001145098) -47 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 21307 chr4 39698001 39698114 + 0 NA promoter-TSS (NM_001312647) promoter-TSS (NM_001312647) 13 NM_001312647 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 6616 chr12 12611703 12611734 + 0 NA promoter-TSS (NM_001310) promoter-TSS (NM_001310) -115 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 10570 chr15 82530848 82530852 + 0 NA Intergenic Intergenic 9607 NR_111943 6218 Hs.433427 NM_001021 ENSG00000182774 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 2864 chr1 226828171 226828319 + 0 NA Intergenic Intergenic -42327 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 9023 chr14 54168615 54168719 + 0 NA Intergenic Intergenic -211776 NM_001202 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 10916 chr16 3124247 3124439 + 0 NA Intergenic CpG -8745 NR_024167 81854 Hs.669490 NR_024166 ZNF205-AS1 - ZNF205 antisense RNA 1 ncRNA 23084 chr5 119303076 119303264 + 0 NA intron (NM_001077654, intron 1 of 1) intron (NM_001077654, intron 1 of 1) -30005 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 18043 chr20 43457777 43457806 + 0 NA promoter-TSS (NR_034009) promoter-TSS (NR_034009) -73 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 15576 chr2 55693806 55693969 + 0 NA promoter-TSS (NM_033109) promoter-TSS (NM_033109) 23 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 23063 chr5 115657939 115658043 + 0 NA intron (NR_104674, intron 3 of 4) intron (NR_104674, intron 3 of 4) 14661 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 16890 chr2 199223983 199224087 + 0 NA Intergenic LTR18A|LTR|ERVL 234061 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 28409 chr8 107525622 107525714 + 0 NA Intergenic L2c|LINE|L2 -27613 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 14566 chr19 45528809 45528938 + 0 NA 3' UTR (NM_001017989, exon 2 of 2) 3' UTR (NM_001017989, exon 2 of 2) 21443 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator-stimulated phosphoprotein protein-coding 28441 chr8 113437835 113437972 + 0 NA promoter-TSS (NM_052900) promoter-TSS (NM_052900) -890 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 3111 chr1 244323133 244323267 + 0 NA Intergenic Intergenic -29435 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 19923 chr3 114152714 114152715 + 0 NA intron (NM_033663, intron 3 of 7) intron (NM_033663, intron 3 of 7) 26062 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 27914 chr8 60652216 60652366 + 0 NA Intergenic CpG -26474 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 19231 chr3 18124584 18124688 + 0 NA intron (NM_001257177, intron 4 of 4) MLT1I|LTR|ERVL-MaLR 162064 NM_001257177 339862 Hs.652981 NM_001257177 LOC339862 - uncharacterized LOC339862 protein-coding 29857 chr9 110763660 110763764 + 0 NA intron (NM_001166280, intron 8 of 12) intron (NM_001166280, intron 8 of 12) 94941 NM_001166280 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS muscle associated receptor tyrosine kinase protein-coding 17767 chr20 22851878 22852009 + 0 NA Intergenic L1MA9|LINE|L1 -183477 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 21006 chr3 194003251 194003388 + 0 NA intron (NR_033944, intron 1 of 2) CpG 340 NR_033944 647323 Hs.652830 NR_033944 ENSG00000214146 LINC02026 - long intergenic non-protein coding RNA 2026 ncRNA 11749 chr16 83356298 83356402 + 0 NA intron (NM_001257, intron 6 of 13) intron (NM_001257, intron 6 of 13) -151996 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 4335 chr10 110211215 110211380 + 0 NA intron (NM_001008541, intron 1 of 4) intron (NM_001008541, intron 1 of 4) 1066 NM_001008541 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 5048 chr11 27464560 27464664 + 0 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) -7119 NR_131169 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 26772 chr7 105521916 105522020 + 0 NA intron (NM_019042, intron 1 of 15) CpG 290 NM_019042 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 - pseudouridylate synthase 7 (putative) protein-coding 13612 chr18 54776351 54776503 + 0 NA Intergenic LTR84b|LTR|ERVL -52050 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 30228 chr9 129383133 129383237 + 0 NA Intergenic Intergenic 46262 NR_120686 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 20972 chr3 192273680 192273781 + 0 NA intron (NR_046596, intron 3 of 4) intron (NR_046596, intron 3 of 4) 35100 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 16238 chr2 121151879 121151983 + 0 NA Intergenic Intergenic 133271 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 19799 chr3 105275005 105275138 + 0 NA Intergenic AluJb|SINE|Alu -91642 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 26325 chr7 56074441 56074535 + 0 NA intron (NM_001146333, intron 3 of 7) intron (NM_001146333, intron 3 of 7) 10264 NM_001042469 25870 Hs.279696 NM_015411 ENSG00000129103 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 25140 chr6 128598704 128598781 + 0 NA Intergenic Intergenic -78068 NM_001291984 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type K protein-coding 4353 chr10 110852414 110852518 + 0 NA Intergenic Intergenic 18438 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 19851 chr3 110814190 110814294 + 0 NA Intergenic Intergenic 255717 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 8895 chr14 36952835 36952939 + 0 NA promoter-TSS (NR_039725) promoter-TSS (NR_039725) -496 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 2939 chr1 231211535 231211589 + 0 NA intron (NM_001300889, intron 10 of 11) intron (NM_001300889, intron 10 of 11) -23935 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 1877 chr1 158125100 158125233 + 0 NA Intergenic Intergenic 15474 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 18032 chr20 41317657 41317806 + 0 NA Intergenic CpG -17632 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 7695 chr12 116455022 116455126 + 0 NA Intergenic Intergenic -26756 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 10225 chr15 60479011 60479090 + 0 NA promoter-TSS (NR_120340) promoter-TSS (NR_120340) 110 NM_001276385 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 28540 chr8 121724575 121724674 + 0 NA Intergenic Intergenic -83234 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 30032 chr9 121156324 121156399 + 0 NA intron (NM_001330762, intron 16 of 32) intron (NM_001330762, intron 16 of 32) 34591 NM_001330762 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 16514 chr2 158011141 158011260 + 0 NA intron (NM_001135098, intron 1 of 8) intron (NM_001135098, intron 1 of 8) 16021 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 1168 chr1 81682519 81682623 + 0 NA Intergenic Intergenic -17199 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 13363 chr18 27839286 27839438 + 0 NA Intergenic Intergenic 197223 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 28219 chr8 94640948 94640989 + 0 NA promoter-TSS (NM_001034915) promoter-TSS (NM_001034915) -168 NM_001122827 54845 Hs.487471 NM_017697 ENSG00000104413 ESRP1 RBM35A|RMB35A epithelial splicing regulatory protein 1 protein-coding 11450 chr16 61792195 61792299 + 0 NA intron (NM_001796, intron 7 of 11) intron (NM_001796, intron 7 of 11) 244588 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 25058 chr6 117167799 117167965 + 0 NA Intergenic Intergenic -97676 NM_182645 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 7769 chr12 121184525 121184678 + 0 NA non-coding (NR_033951, exon 12 of 12) non-coding (NR_033951, exon 12 of 12) -25260 NR_046372 5025 Hs.321709 NM_002560 ENSG00000135124 P2RX4 P2X4|P2X4R purinergic receptor P2X 4 protein-coding 26542 chr7 87345501 87345605 + 0 NA promoter-TSS (NR_015381) promoter-TSS (NR_015381) -61 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 (non-protein coding) ncRNA 11514 chr16 67935702 67935806 + 0 NA intron (NM_002801, intron 4 of 7) CpG-9855 1123 NM_002801 5699 Hs.9661 NM_002801 ENSG00000205220 PSMB10 LMP10|MECL1|beta2i proteasome subunit beta 10 protein-coding 8319 chr13 61665444 61665594 + 0 NA Intergenic LTR18B|LTR|ERVL -237573 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LOC101926951 - uncharacterized LOC101926951 ncRNA 7497 chr12 98515465 98515569 + 0 NA promoter-TSS (NM_001307975) promoter-TSS (NM_001307975) -56 NM_001307975 7112 Hs.11355 NM_003276 ENSG00000120802 TMPO CMD1T|LAP2|LEMD4|PRO0868|TP thymopoietin protein-coding 27576 chr8 26291277 26291405 + 0 NA promoter-TSS (NM_002717) promoter-TSS (NM_002717) -150 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2 regulatory subunit Balpha protein-coding 17493 chr20 3820471 3820537 + 0 NA promoter-TSS (NM_001204446) promoter-TSS (NM_001204446) -20 NM_001204446 55317 Hs.104806 NM_018347 ENSG00000125843 AP5S1 C20orf29 adaptor related protein complex 5 sigma 1 subunit protein-coding 21990 chr4 168421892 168421996 + 0 NA intron (NM_001345927, intron 16 of 37) intron (NM_001345927, intron 16 of 37) 58570 NM_001345927 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DEAD-box helicase 60-like protein-coding 5186 chr11 37504330 37504428 + 0 NA Intergenic Intergenic -434222 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 25017 chr6 111259193 111259351 + 0 NA promoter-TSS (NM_153369) promoter-TSS (NM_153369) -7 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 22661 chr5 67021196 67021300 + 0 NA intron (NM_001290227, intron 2 of 25) intron (NM_001290227, intron 2 of 25) 16628 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 26560 chr7 88337752 88337840 + 0 NA Intergenic Intergenic -30883 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 11555 chr16 69311159 69311338 + 0 NA promoter-TSS (NM_013245) promoter-TSS (NM_013245) -136 NM_013245 27183 Hs.128420 NM_013245 ENSG00000132612 VPS4A SKD1|SKD1A|SKD2|VPS4|VPS4-1 vacuolar protein sorting 4 homolog A protein-coding 13052 chr17 76737818 76737852 + 0 NA promoter-TSS (NM_001195427) promoter-TSS (NM_001195427) 334 NM_001242535 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 22575 chr5 57735449 57735474 + 0 NA Intergenic MER41A|LTR|ERV1 84801 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 26458 chr7 76423638 76423673 + 0 NA intron (NM_007155, intron 1 of 8) AluSz|SINE|Alu -1300 NM_001110354 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 23893 chr6 2999844 2999953 + 0 NA promoter-TSS (NM_001318940) promoter-TSS (NM_001318940) 82 NM_001290221 4835 Hs.533050 NM_000904 ENSG00000124588 NQO2 DHQV|DIA6|NMOR2|QR2 NAD(P)H quinone dehydrogenase 2 protein-coding 24177 chr6 21593629 21593723 + 0 NA promoter-TSS (NM_003107) promoter-TSS (NM_003107) -65 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box 4 protein-coding 11026 chr16 11797354 11797486 + 0 NA promoter-TSS (NM_014153) promoter-TSS (NM_014153) -162 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 6855 chr12 33588254 33588358 + 0 NA Intergenic LTR73|LTR|ERV1 -148487 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 8558 chr13 106129405 106129532 + 0 NA Intergenic Intergenic -247095 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 28741 chr8 134713013 134713144 + 0 NA promoter-TSS (NM_001174157) promoter-TSS (NM_001174157) -29 NR_110323 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 22736 chr5 74956352 74956492 + 0 NA Intergenic Intergenic 74477 NM_016591 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3 glucosaminyl (N-acetyl) transferase 4, core 2 protein-coding 11588 chr16 71339876 71339980 + 0 NA Intergenic L2c|LINE|L2 -18785 NR_027910 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 444 chr1 27044650 27044760 + 0 NA Intergenic Intergenic -31863 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 FAM46B - family with sequence similarity 46 member B protein-coding 29934 chr9 114718894 114719010 + 0 NA Intergenic Intergenic -36863 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 LOC100505478 - uncharacterized LOC100505478 protein-coding 508 chr1 30718212 30718366 + 0 NA promoter-TSS (NR_034182) promoter-TSS (NR_034182) -483 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 27528 chr8 23084248 23084379 + 0 NA promoter-TSS (NR_046173) promoter-TSS (NR_046173) -42 NR_046173 254896 Hs.735240 NR_046173 ENSG00000173535 LOC254896 - uncharacterized LOC254896 ncRNA 15568 chr2 55050471 55050610 + 0 NA promoter-TSS (NM_207520) promoter-TSS (NM_207520) 58 NM_207520 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 8318 chr13 60766118 60766222 + 0 NA Intergenic Intergenic 93215 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 14992 chr2 10302752 10302844 + 0 NA promoter-TSS (NM_002149) promoter-TSS (NM_002149) -106 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 27295 chr7 158704922 158705063 + 0 NA promoter-TSS (NM_001281932) promoter-TSS (NM_001281932) -161 NM_001281932 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 23097 chr5 120605035 120605139 + 0 NA intron (NM_001308088, intron 1 of 3) L1PA16|LINE|L1 73623 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 19578 chr3 57060569 57060650 + 0 NA 5' UTR (NM_181727, exon 1 of 2) 5' UTR (NM_181727, exon 1 of 2) 168 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 11740 chr16 82071105 82071209 + 0 NA intron (NM_002153, intron 3 of 4) intron (NM_002153, intron 3 of 4) 35904 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 1089 chr1 68197987 68198091 + 0 NA intron (NM_024911, intron 1 of 11) intron (NM_024911, intron 1 of 11) -14429 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 27527 chr8 23074754 23074908 + 0 NA intron (NR_038873, intron 1 of 2) intron (NR_038873, intron 1 of 2) -5644 NR_027140 8795 Hs.521456 NM_003842 ENSG00000120889 TNFRSF10B CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9 TNF receptor superfamily member 10b protein-coding 20384 chr3 150320077 150320239 + 0 NA intron (NR_110187, intron 1 of 1) intron (NR_110187, intron 1 of 1) 3589 NR_110186 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 12 chr1 1122170 1122321 + 0 NA Intergenic Intergenic -5889 NM_001330306 54991 Hs.235095 NM_017891 ENSG00000131591 C1orf159 - chromosome 1 open reading frame 159 protein-coding 12623 chr17 48101392 48101534 + 0 NA promoter-TSS (NM_006807) promoter-TSS (NM_006807) 58 NM_001127228 10951 Hs.77254 NM_006807 ENSG00000108468 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox 1 protein-coding 25027 chr6 112087492 112087625 + 0 NA promoter-TSS (NM_016262) promoter-TSS (NM_016262) -10 NM_016262 51175 Hs.34851 NM_016262 ENSG00000074935 TUBE1 TUBE|dJ142L7.2 tubulin epsilon 1 protein-coding 1554 chr1 114716724 114716803 + 0 NA TTS (NM_007158) TTS (NM_007158) 131 NM_002524 4893 Hs.486502 NM_002524 ENSG00000213281 NRAS ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6 neuroblastoma RAS viral oncogene homolog protein-coding 10531 chr15 80106235 80106339 + 0 NA intron (NM_001242919, intron 1 of 5) L2a|LINE|L2 7871 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 16850 chr2 191689441 191689545 + 0 NA promoter-TSS (NR_131917) promoter-TSS (NR_131917) -688 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 2168 chr1 181117716 181117818 + 0 NA Intergenic Intergenic 29265 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 17238 chr2 229445043 229445147 + 0 NA intron (NM_139072, intron 8 of 12) intron (NM_139072, intron 8 of 12) -173754 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 15441 chr2 43200020 43200124 + 0 NA Intergenic Intergenic 26534 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 9670 chr14 100285656 100285745 + 0 NA Intergenic CpG 8343 NR_106822 102466730 NR_106822 ENSG00000100811 MIR6764 hsa-mir-6764 microRNA 6764 ncRNA 3518 chr10 30682490 30682651 + 0 NA Intergenic Intergenic -9704 NR_036438 645954 Hs.408581 NR_036438 SVILP1 - supervillin pseudogene 1 pseudo 6852 chr12 33224073 33224232 + 0 NA Intergenic LTR16B1|LTR|ERVL 215667 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 7463 chr12 96035662 96035682 + 0 NA promoter-TSS (NM_000895) promoter-TSS (NM_000895) -11 NM_000895 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 20393 chr3 150519161 150519264 + 0 NA Intergenic Intergenic 27429 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 16981 chr2 207163641 207163774 + 0 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 2309 NM_003709 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 23621 chr5 159209633 159209803 + 0 NA promoter-TSS (NM_001199383) promoter-TSS (NM_001199383) -163 NM_001199383 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 17313 chr2 234840408 234840512 + 0 NA Intergenic Intergenic -111524 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 25826 chr7 21865904 21866008 + 0 NA intron (NM_001277115, intron 70 of 81) MER41A|LTR|ERV1 79968 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 11724 chr16 81527128 81527179 + 0 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -6749 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 10211 chr15 59689462 59689560 + 0 NA promoter-TSS (NM_001320674) promoter-TSS (NM_001320674) 23 NM_001320674 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 28402 chr8 106658384 106658442 + 0 NA intron (NM_181354, intron 1 of 13) intron (NM_181354, intron 1 of 13) 605 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 19138 chr3 9731373 9731390 + 0 NA promoter-TSS (NM_001319050) promoter-TSS (NM_001319050) -348 NM_001319049 7862 Hs.1004 NM_004634 ENSG00000156983 BRPF1 BR140 bromodomain and PHD finger containing 1 protein-coding 1522 chr1 112396080 112396209 + 0 NA promoter-TSS (NM_018704) promoter-TSS (NM_018704) -34 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 136 chr1 9719195 9719333 + 0 NA intron (NM_005026, intron 9 of 23) intron (NM_005026, intron 9 of 23) -31690 NR_126368 101929074 Hs.661762 NR_126366 ENSG00000231789 PIK3CD-AS2 - PIK3CD antisense RNA 2 ncRNA 116 chr1 8525343 8525437 + 0 NA intron (NM_012102, intron 8 of 23) intron (NM_012102, intron 8 of 23) -30477 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 23120 chr5 124583940 124584051 + 0 NA Intergenic Intergenic -145475 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 21476 chr4 77695894 77695998 + 0 NA Intergenic Intergenic 123444 NM_001286790 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 15775 chr2 70994949 70995132 + 0 NA promoter-TSS (NM_144582) promoter-TSS (NM_144582) -169 NM_144582 113419 Hs.516087 NM_144582 ENSG00000144043 TEX261 TEG-261 testis expressed 261 protein-coding 28156 chr8 88328612 88328716 + 0 NA Intergenic Intergenic -1176 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 14982 chr2 9897543 9897655 + 0 NA intron (NM_005680, intron 8 of 14) intron (NM_005680, intron 8 of 14) -54064 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 8596 chr13 109803992 109804096 + 0 NA Intergenic Intergenic -17477 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 14118 chr19 11482225 11482302 + 0 NA Intergenic CpG-13739 -1275 NM_001420 1995 Hs.1701 NM_001420 ENSG00000196361 ELAVL3 HUC|HUCL|PLE21 ELAV like RNA binding protein 3 protein-coding 10428 chr15 73647481 73647570 + 0 NA Intergenic L1MEc|LINE|L1 -14113 NM_001161364 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 29352 chr9 80378751 80378893 + 0 NA Intergenic Intergenic 403799 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 16853 chr2 191867210 191867314 + 0 NA Intergenic Intergenic -19982 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 SDPR CAVIN2|PS-p68|SDR|cavin-2 serum deprivation response protein-coding 308 chr1 20588882 20589048 + 0 NA promoter-TSS (NM_001785) promoter-TSS (NM_001785) 14 NM_001785 978 Hs.466910 NM_001785 ENSG00000158825 CDA CDD cytidine deaminase protein-coding 4604 chr10 128126432 128126544 + 0 NA promoter-TSS (NM_002417) promoter-TSS (NM_002417) -284 NM_001145966 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 10985 chr16 9047825 9047929 + 0 NA Intergenic Intergenic -43803 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 3485 chr10 28303182 28303333 + 0 NA promoter-TSS (NR_134517) promoter-TSS (NR_134517) -191 NR_134518 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 14947 chr2 8662683 8662787 + 0 NA Intergenic Intergenic 19126 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 (head to head) ncRNA 23861 chr6 1209075 1209099 + 0 NA Intergenic Intergenic -103353 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 16286 chr2 127858218 127858322 + 0 NA promoter-TSS (NM_004805) promoter-TSS (NM_004805) -115 NM_004805 5433 Hs.715348 NM_004805 ENSG00000144231 POLR2D HSRBP4|HSRPB4|RBP4|RPB16 RNA polymerase II subunit D protein-coding 15202 chr2 26012187 26012291 + 0 NA Intergenic Intergenic -21621 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 5843 chr11 92843706 92843759 + 0 NA intron (NM_001008781, intron 17 of 24) intron (NM_001008781, intron 17 of 24) 71896 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 19148 chr3 10011223 10011319 + 0 NA promoter-TSS (NM_018447) promoter-TSS (NM_018447) -23 NM_018447 55831 Hs.475392 NM_018447 ENSG00000125037 EMC3 POB|TMEM111 ER membrane protein complex subunit 3 protein-coding 18157 chr20 49278466 49278490 + 0 NA promoter-TSS (NM_021035) promoter-TSS (NM_021035) -164 NR_036659 441951 Hs.356766 NR_003604 ENSG00000177410 ZFAS1 C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1 ZNFX1 antisense RNA 1 ncRNA 5295 chr11 58579630 58579812 + 0 NA intron (NR_024091, intron 1 of 12) CpG 607 NM_053023 80829 Hs.524920 NM_053023 ENSG00000186660 ZFP91 DMS-8|DSM-8|FKSG11|PZF|ZFP-91|ZNF757 ZFP91 zinc finger protein protein-coding 5992 chr11 104669226 104669330 + 0 NA Intergenic Intergenic -59976 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LOC102723895 - uncharacterized LOC102723895 ncRNA 13024 chr17 75855492 75855596 + 0 NA promoter-TSS (NM_012478) promoter-TSS (NM_012478) -124 NM_012478 23558 Hs.514489 NM_012478 ENSG00000132471 WBP2 GRAMD6|WBP-2 WW domain binding protein 2 protein-coding 30479 chrX 10014883 10014987 + 0 NA promoter-TSS (NM_015691) promoter-TSS (NM_015691) -820 NM_015691 55841 Hs.527524 NM_015691 ENSG00000047644 WWC3 BM042 WWC family member 3 protein-coding 15638 chr2 62505966 62506025 + 0 NA intron (NM_198276, intron 1 of 3) CpG 474 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 15445 chr2 43313473 43313558 + 0 NA intron (NR_144316, intron 30 of 36) intron (NR_144316, intron 30 of 36) 86304 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 23496 chr5 149719853 149719972 + 0 NA Intergenic Intergenic -10340 NM_001172698 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 3027 chr1 236395012 236395160 + 0 NA promoter-TSS (NM_080738) promoter-TSS (NM_080738) -330 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 30672 chrX 47561051 47561177 + 0 NA promoter-TSS (NM_001256197) promoter-TSS (NM_001256197) 14 NM_001256196 369 Hs.446641 NM_001654 ENSG00000078061 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 8471 chr13 97433127 97433280 + 0 NA Intergenic CpG -1018 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 8301 chr13 52652676 52652884 + 0 NA promoter-TSS (NM_001130912) promoter-TSS (NM_001130912) 89 NM_006704 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 13434 chr18 35290246 35290375 + 0 NA promoter-TSS (NR_024565) promoter-TSS (NR_024565) 38 NR_024566 10778 Hs.314246 NM_006629 ENSG00000257267 ZNF271P CT-ZFP48|HZF7|ZNF-EB|ZNF-dp|ZNF271|ZNFEB zinc finger protein 271, pseudogene pseudo 22609 chr5 61304825 61304846 + 0 NA Intergenic Intergenic -27438 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 27096 chr7 139340485 139340640 + 0 NA promoter-TSS (NM_001244584) promoter-TSS (NM_001244584) 112 NR_073059 154791 Hs.718441 NM_197964 ENSG00000164898 FMC1 C7orf55|HSPC268 formation of mitochondrial complex V assembly factor 1 homolog protein-coding 8506 chr13 100088977 100089079 + 0 NA promoter-TSS (NM_001178004) promoter-TSS (NM_001178004) 13 NM_001127692 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase alpha subunit protein-coding 8148 chr13 40445505 40445650 + 0 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 35429 NR_024505 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 - long intergenic non-protein coding RNA 598 ncRNA 25761 chr7 17490091 17490252 + 0 NA intron (NR_110013, intron 1 of 3) MER96|DNA|hAT-Tip100 68738 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 6573 chr12 8914863 8915004 + 0 NA intron (NM_004426, intron 1 of 14) intron (NM_004426, intron 1 of 14) 213 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 22841 chr5 87412932 87413077 + 0 NA promoter-TSS (NM_001199189) promoter-TSS (NM_001199189) 29 NM_001239 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 9290 chr14 69611527 69611662 + 0 NA promoter-TSS (NM_014734) promoter-TSS (NM_014734) 1 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 17703 chr20 18497180 18497320 + 0 NA promoter-TSS (NM_006606) promoter-TSS (NM_006606) -7 NM_006606 10741 Hs.69330 NM_006606 ENSG00000089050 RBBP9 BOG|RBBP10 RB binding protein 9, serine hydrolase protein-coding 1758 chr1 153288698 153288826 + 0 NA Intergenic Intergenic 21956 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 9676 chr14 100645798 100645902 + 0 NA Intergenic LTR41|LTR|ERVL -11418 NR_024096 283601 Hs.379802 NM_001007560 ENSG00000196273 LINC00523 C14orf70 long intergenic non-protein coding RNA 523 ncRNA 30718 chrX 49231036 49231140 + 0 NA intron (NM_005183, intron 3 of 47) intron (NM_005183, intron 3 of 47) 2283 NM_001256790 778 Hs.632799 NM_005183 ENSG00000102001 CACNA1F AIED|COD3|COD4|CORDX|CORDX3|CSNB2|CSNB2A|CSNBX2|Cav1.4|Cav1.4alpha1|JM8|JMC8|OA2 calcium voltage-gated channel subunit alpha1 F protein-coding 12300 chr17 30477323 30477460 + 0 NA promoter-TSS (NM_004871) promoter-TSS (NM_004871) -17 NM_001007025 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 6762 chr12 26246565 26246722 + 0 NA Intergenic Intergenic 51070 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 28088 chr8 80874864 80874968 + 0 NA promoter-TSS (NM_001033723) promoter-TSS (NM_001033723) -135 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 13266 chr18 11669796 11669900 + 0 NA Intergenic Intergenic -14907 NR_106975 102465690 NR_106975 ENSG00000283492 MIR7153 hsa-mir-7153|mir-7153 microRNA 7153 ncRNA 9337 chr14 72926273 72926424 + 0 NA promoter-TSS (NM_015604) promoter-TSS (NM_015604) 16 NM_015604 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 17422 chr20 362670 362774 + 0 NA Intergenic Intergenic 14817 NM_001323685 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 12846 chr17 64443234 64443338 + 0 NA Intergenic AluSx|SINE|Alu -5829 NM_001291316 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 11504 chr16 67562088 67562237 + 0 NA promoter-TSS (NM_001191022) promoter-TSS (NM_001191022) -245 NM_001191022 10664 Hs.368367 NM_006565 ENSG00000102974 CTCF MRD21 CCCTC-binding factor protein-coding 25995 chr7 32669333 32669476 + 0 NA intron (NR_036680, intron 5 of 16) MER76|LTR|ERVL 49764 NR_036680 100129460 Hs.633705 NR_036680 DPY19L1P1 - DPY19L1 pseudogene 1 pseudo 2349 chr1 200620780 200620962 + 0 NA promoter-TSS (NM_014875) promoter-TSS (NM_014875) -137 NM_014875 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MKS12 kinesin family member 14 protein-coding 6081 chr11 112025271 112025372 + 0 NA 5' UTR (NM_001931, exon 1 of 14) 5' UTR (NM_001931, exon 1 of 14) 507 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 11209 chr16 30065268 30065372 + 0 NA promoter-TSS (NM_001243177) promoter-TSS (NM_001243177) -353 NM_184041 226 Hs.513490 NM_000034 ENSG00000149925 ALDOA ALDA|GSD12|HEL-S-87p aldolase, fructose-bisphosphate A protein-coding 1541 chr1 113812407 113812560 + 0 NA promoter-TSS (NM_018364) promoter-TSS (NM_018364) -7 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 ROSBIN round spermatid basic protein 1 protein-coding 13594 chr18 52160794 52160947 + 0 NA Intergenic Intergenic -179302 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 26956 chr7 126304068 126304172 + 0 NA Intergenic MER66-int|LTR|ERV1 754064 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 5136 chr11 34396275 34396430 + 0 NA Intergenic Intergenic -38344 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 22869 chr5 90558510 90558614 + 0 NA promoter-TSS (NR_003149) promoter-TSS (NR_003149) -238 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 19811 chr3 106333917 106334021 + 0 NA Intergenic Intergenic -464547 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 22011 chr4 172390415 172390519 + 0 NA intron (NM_001034845, intron 5 of 12) Tigger7|DNA|TcMar-Tigger 298450 NR_125895 101928314 Hs.566023 NR_125894 LOC101928314 - uncharacterized LOC101928314 ncRNA 17447 chr20 1569559 1569723 + 0 NA intron (NM_001083910, intron 2 of 3) intron (NM_001083910, intron 2 of 3) -11944 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 4113 chr10 95266853 95266957 + 0 NA intron (NM_020992, intron 3 of 6) intron (NM_020992, intron 3 of 6) 24243 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 4889 chr11 14411974 14412078 + 0 NA Intergenic Intergenic -47520 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 27986 chr8 69031477 69031532 + 0 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 72686 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 3044 chr1 237799965 237800119 + 0 NA intron (NM_001035, intron 97 of 104) intron (NM_001035, intron 97 of 104) -62133 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 2108 chr1 176517532 176517636 + 0 NA intron (NM_020318, intron 1 of 22) intron (NM_020318, intron 1 of 22) 54413 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 7848 chr12 124681458 124681605 + 0 NA Intergenic MER58A|DNA|hAT-Charlie -114067 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 888 chr1 53907503 53907604 + 0 NA intron (NR_136693, intron 4 of 4) intron (NR_136693, intron 4 of 4) 13366 NM_213593 1733 Hs.251415 NM_000792 ENSG00000211452 DIO1 5DI|TXDI1 iodothyronine deiodinase 1 protein-coding 7541 chr12 102540002 102540090 + 0 NA Intergenic Intergenic -59401 NM_001111283 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 6123 chr11 116276695 116276848 + 0 NA Intergenic Intergenic -362651 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 20921 chr3 189824667 189824809 + 0 NA intron (NM_001329964, intron 4 of 13) intron (NM_001329964, intron 4 of 13) -5184 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 29310 chr9 77876633 77876737 + 0 NA intron (NM_002072, intron 2 of 6) MIRb|SINE|MIR 154764 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 9198 chr14 64387876 64387980 + 0 NA promoter-TSS (NM_005956) promoter-TSS (NM_005956) -113 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 28847 chr8 144755512 144755666 + 0 NA promoter-TSS (NM_138367) promoter-TSS (NM_138367) -4 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 5940 chr11 100329076 100329190 + 0 NA intron (NM_175566, intron 18 of 21) L1PB1|LINE|L1 -358543 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 22477 chr5 43772892 43772996 + 0 NA Intergenic Intergenic -169714 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 12497 chr17 41689320 41689341 + 0 NA intron (NM_005801, intron 1 of 3) CpG 455 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 27067 chr7 135827534 135827638 + 0 NA Intergenic Intergenic -78740 NM_205855 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 3406 chr10 22325768 22325857 + 0 NA intron (NM_005180, intron 1 of 9) CpG 4602 NM_005180 648 Hs.380403 NM_005180 ENSG00000168283 BMI1 FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 BMI1 proto-oncogene, polycomb ring finger protein-coding 2853 chr1 226309107 226309222 + 0 NA exon (NM_173083, exon 1 of 15) exon (NM_173083, exon 1 of 15) 339 NM_001270409 286826 Hs.120817 NM_173083 ENSG00000183814 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 1380 chr1 98324023 98324047 + 0 NA Intergenic MLT2F|LTR|ERVL 113324 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 9445 chr14 78143623 78143727 + 0 NA Intergenic Intergenic -26698 NM_001330195 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 4772 chr11 7965387 7965396 + 0 NA Intergenic Intergenic -1879 NM_176821 338322 Hs.449636 NM_176821 ENSG00000182261 NLRP10 CLR11.1|NALP10|NOD8|PAN5|PYNOD NLR family pyrin domain containing 10 protein-coding 29926 chr9 114484967 114485071 + 0 NA intron (NM_001173425, intron 1 of 11) intron (NM_001173425, intron 1 of 11) 18196 NM_001083885 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 25291 chr6 146914005 146914133 + 0 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -110245 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 5162 chr11 35796847 35796951 + 0 NA intron (NM_017583, intron 4 of 4) intron (NM_017583, intron 4 of 4) 134147 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 22782 chr5 80055857 80055961 + 0 NA exon (NM_003248, exon 3 of 22) exon (NM_003248, exon 3 of 22) 19886 NM_001306214 7060 Hs.211426 NM_003248 ENSG00000113296 THBS4 TSP-4|TSP4 thrombospondin 4 protein-coding 17098 chr2 218272918 218273022 + 0 NA TTS (NM_001077399) TTS (NM_001077399) 2578 NM_001077399 25953 Hs.98475 NM_015488 ENSG00000127838 PNKD BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2 paroxysmal nonkinesigenic dyskinesia protein-coding 5675 chr11 74949090 74949234 + 0 NA promoter-TSS (NM_001270380) promoter-TSS (NM_001270380) 25 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 7101 chr12 55646231 55646335 + 0 NA Intergenic CpG 9391 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 21418 chr4 68152630 68152734 + 0 NA Intergenic Intergenic -22813 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane protease, serine 11F protein-coding 17392 chr2 240565889 240565993 + 0 NA Intergenic Intergenic -2646 NM_018226 57140 Hs.5345 NM_018226 RNPEPL1 - arginyl aminopeptidase like 1 protein-coding 26997 chr7 129958717 129958901 + 0 NA Intergenic Intergenic -5849 NM_003344 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 31127 chrX 147979154 147979179 + 0 NA Intergenic MIR3|SINE|MIR -2163 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 fragile X mental retardation 1 neighbor protein-coding 5522 chr11 66546059 66546146 + 0 NA promoter-TSS (NM_001104) promoter-TSS (NM_001104) 98 NM_207340 254359 Hs.659933 NM_207340 ENSG00000174165 ZDHHC24 - zinc finger DHHC-type containing 24 protein-coding 11771 chr16 84618077 84618125 + 0 NA promoter-TSS (NM_021149) promoter-TSS (NM_021149) -5 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 18549 chr21 39445791 39445820 + 0 NA promoter-TSS (NM_001317741) promoter-TSS (NM_001317741) -60 NM_001317742 6450 Hs.473847 NM_007341 ENSG00000185437 SH3BGR 21-GARP SH3 domain binding glutamate rich protein protein-coding 12857 chr17 64975429 64975533 + 0 NA non-coding (NR_026903, exon 1 of 5) non-coding (NR_026903, exon 1 of 5) 104 NR_026903 201283 Hs.396447 NM_153032 ENSG00000214174 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 28552 chr8 122575974 122576078 + 0 NA Intergenic Intergenic -7382 NR_131202 105375734 Hs.628341 NR_131202 LOC105375734 - uncharacterized LOC105375734 ncRNA 12395 chr17 36856227 36856373 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger 80361 NR_135671 102723471 Hs.567930 NR_135668 ENSG00000277268 LOC102723471 - uncharacterized LOC102723471 ncRNA 860 chr1 51063295 51063402 + 0 NA Intergenic L1M4|LINE|L1 3330 NR_106754 102466656 NR_106754 ENSG00000275816 MIR6500 hsa-mir-6500 microRNA 6500 ncRNA 11922 chr17 2511838 2511990 + 0 NA promoter-TSS (NM_024086) promoter-TSS (NM_024086) -8 NM_024086 79066 Hs.632237 NM_024086 ENSG00000127804 METTL16 METT10D methyltransferase like 16 protein-coding 27775 chr8 47960829 47960898 + 0 NA promoter-TSS (NM_006904) promoter-TSS (NM_006904) 660 NM_005914 4173 Hs.460184 NM_005914 ENSG00000104738 MCM4 CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 19141 chr3 9792957 9793084 + 0 NA promoter-TSS (NM_001278270) promoter-TSS (NM_001278270) -9 NM_001278270 10474 Hs.386390 NM_006354 ENSG00000171148 TADA3 ADA3|NGG1|STAF54|TADA3L|hADA3 transcriptional adaptor 3 protein-coding 18865 chr22 37538895 37539045 + 0 NA Intergenic Intergenic -19767 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 4887 chr11 14359091 14359189 + 0 NA promoter-TSS (NM_001102669) promoter-TSS (NM_001102669) 44 NM_012250 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 25430 chr6 159727419 159727496 + 0 NA promoter-TSS (NM_152857) promoter-TSS (NM_152857) -43 NM_001270531 9589 Hs.446091 NM_004906 ENSG00000146457 WTAP Mum2 Wilms tumor 1 associated protein protein-coding 15732 chr2 69046265 69046369 + 0 NA intron (NM_032208, intron 3 of 17) intron (NM_032208, intron 3 of 17) 33173 NM_032208 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 anthrax toxin receptor 1 protein-coding 7670 chr12 112409610 112409664 + 0 NA promoter-TSS (NM_001320140) promoter-TSS (NM_001320140) 4 NM_001024662 6128 Hs.528668 NM_000970 ENSG00000089009 RPL6 L6|SHUJUN-2|TAXREB107|TXREB1 ribosomal protein L6 protein-coding 29710 chr9 100739742 100739880 + 0 NA Intergenic L1PB1|LINE|L1 161732 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 MURC CAVIN4|cavin-4 muscle related coiled-coil protein protein-coding 29622 chr9 96344623 96344727 + 0 NA intron (NM_007001, intron 7 of 11) intron (NM_007001, intron 7 of 11) 39035 NR_104627 11046 Hs.494556 NM_007001 ENSG00000130958 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 member D2 protein-coding 18794 chr22 30841379 30841565 + 0 NA intron (NM_001282741, intron 1 of 12) L1MB8|LINE|L1 18956 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 2565 chr1 209542606 209542710 + 0 NA Intergenic Intergenic -41042 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 3047 chr1 237901422 237901526 + 0 NA intron (NR_027247, intron 4 of 11) intron (NR_027247, intron 4 of 11) -10552 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 2158 chr1 180631836 180631982 + 0 NA promoter-TSS (NM_004736) promoter-TSS (NM_004736) -101 NM_001135669 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 28397 chr8 106270142 106270297 + 0 NA promoter-TSS (NM_018002) promoter-TSS (NM_018002) 41 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 3829 chr10 69641435 69641538 + 0 NA Intergenic Intergenic 11239 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 C10orf35 - chromosome 10 open reading frame 35 protein-coding 2362 chr1 201266863 201267006 + 0 NA Intergenic Intergenic -16518 NM_001005337 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 7084 chr12 54188963 54189137 + 0 NA promoter-TSS (NM_001243787) promoter-TSS (NM_001243787) -56 NR_045039 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 17853 chr20 31723571 31723740 + 0 NA promoter-TSS (NM_001191) promoter-TSS (NM_001191) 344 NM_001322240 598 Hs.516966 NM_001191 ENSG00000171552 BCL2L1 BCL-XL/S|BCL2L|BCLX|Bcl-X|PPP1R52 BCL2 like 1 protein-coding 2796 chr1 223726874 223726949 + 0 NA intron (NM_001146068, intron 2 of 20) intron (NM_001146068, intron 2 of 20) 14494 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 15092 chr2 17303123 17303297 + 0 NA Intergenic Intergenic 215229 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 11411 chr16 56931946 56932086 + 0 NA promoter-TSS (NM_001010989) promoter-TSS (NM_001010989) -74 NM_001272103 9709 Hs.146393 NM_014685 ENSG00000051108 HERPUD1 HERP|Mif1|SUP homocysteine inducible ER protein with ubiquitin like domain 1 protein-coding 7076 chr12 53845585 53845736 + 0 NA Intergenic Intergenic -88626 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 29118 chr9 63817933 63818026 + 0 NA Intergenic CpG -1595 NR_039689 100616194 NR_039689 ENSG00000266017 MIR4477B - microRNA 4477b ncRNA 8932 chr14 44962087 44962237 + 0 NA promoter-TSS (NM_017658) promoter-TSS (NM_017658) -28 NM_001308120 23116 Hs.371078 NM_015091 ENSG00000198718 FAM179B KIAA0423 family with sequence similarity 179 member B protein-coding 5041 chr11 27202178 27202282 + 0 NA intron (NR_125766, intron 2 of 4) intron (NR_125766, intron 2 of 4) 16538 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 7507 chr12 99445969 99446073 + 0 NA intron (NM_152788, intron 10 of 25) AluJb|SINE|Alu -201729 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 17278 chr2 231961604 231961709 + 0 NA promoter-TSS (NM_001257282) promoter-TSS (NM_001257282) 73 NR_046476 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 21165 chr4 8897966 8898070 + 0 NA Intergenic Intergenic -26201 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 22554 chr5 56112652 56112680 + 0 NA intron (NM_024669, intron 9 of 11) intron (NM_024669, intron 9 of 11) 117499 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 545 chr1 32179745 32179812 + 0 NA promoter-TSS (NM_175852) promoter-TSS (NM_175852) 34 NM_175852 200081 Hs.17987 NM_175852 ENSG00000084652 TXLNA IL14|TXLN taxilin alpha protein-coding 28800 chr8 143016006 143016178 + 0 NA intron (NR_026913, intron 1 of 1) MER21A|LTR|ERVL 2298 NR_026913 100133669 Hs.195309 NR_026913 LOC100133669 - uncharacterized LOC100133669 ncRNA 29462 chr9 87540834 87540924 + 0 NA intron (NM_001288729, intron 2 of 25) intron (NM_001288729, intron 2 of 25) 42344 NM_001288729 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 18424 chr21 15706838 15706942 + 0 NA Intergenic Intergenic -23135 NM_013396 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 10503 chr15 78507438 78507542 + 0 NA promoter-TSS (NM_001013619) promoter-TSS (NM_001013619) -74 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 30461 chrX 7132439 7132557 + 0 NA intron (NM_001135565, intron 1 of 4) intron (NM_001135565, intron 1 of 4) -14754 NM_001320750 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase (microsomal), isozyme S protein-coding 31098 chrX 136131255 136131359 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -15395 NR_027621 2273 Hs.435369 NM_001449 ENSG00000022267 FHL1 FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA four and a half LIM domains 1 protein-coding 14403 chr19 37594711 37594853 + 0 NA promoter-TSS (NM_001321272) promoter-TSS (NM_001321272) 10 NM_016536 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 30259 chr9 130578895 130579026 + 0 NA promoter-TSS (NM_003934) promoter-TSS (NM_003934) 534 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 28416 chr8 108787626 108787730 + 0 NA promoter-TSS (NR_136411) promoter-TSS (NR_136411) -63 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 14617 chr19 47289842 47289977 + 0 NA Intergenic MER66B|LTR|ERV1 15024 NM_178511 255783 Hs.128690 NM_178511 ENSG00000257704 INAFM1 PRR24 InaF motif containing 1 protein-coding 10872 chr16 1959438 1959536 + 0 NA promoter-TSS (NM_004548) promoter-TSS (NM_004548) -29 NM_004548 4716 Hs.513266 NM_004548 ENSG00000140990 NDUFB10 PDSW NADH:ubiquinone oxidoreductase subunit B10 protein-coding 10352 chr15 68820934 68821066 + 0 NA promoter-TSS (NM_006305) promoter-TSS (NM_006305) -78 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 12187 chr17 18377581 18377726 + 0 NA promoter-TSS (NM_001145127) promoter-TSS (NM_001145127) -112 NM_001145127 645027 Hs.462400 NM_001145127 ENSG00000214860 EVPLL - envoplakin like protein-coding 7166 chr12 57591067 57591179 + 0 NA promoter-TSS (NM_001146258) promoter-TSS (NM_001146258) -36 NM_001146259 79837 Hs.745011 NM_024779 ENSG00000166908 PIP4K2C PIP5K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma protein-coding 25334 chr6 150490741 150490827 + 0 NA Intergenic Intergenic -109081 NR_138136 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 6419 chr11 134946121 134946225 + 0 NA Intergenic Intergenic -39179 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 3089 chr1 242225923 242226027 + 0 NA intron (NM_152666, intron 5 of 10) L1ME1|LINE|L1 223507 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 7108 chr12 55927933 55927946 + 0 NA promoter-TSS (NM_001143853) promoter-TSS (NM_001143853) -26 NM_032345 84305 Hs.505687 NM_032345 ENSG00000170473 PYM1 PYM|WIBG PYM homolog 1, exon junction complex associated factor protein-coding 26751 chr7 103149059 103149226 + 0 NA promoter-TSS (NM_001122838) promoter-TSS (NM_001122838) -20 NM_001122838 222236 Hs.324271 NM_198990 ENSG00000161048 NAPEPLD FMP30|NAPE-PLD N-acyl phosphatidylethanolamine phospholipase D protein-coding 13700 chr18 62881745 62881783 + 0 NA intron (NM_194449, intron 4 of 16) intron (NM_194449, intron 4 of 16) 166325 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 27013 chr7 130911282 130911301 + 0 NA intron (NR_110472, intron 2 of 3) (CACAG)n|Simple_repeat|Simple_repeat 2019 NR_110472 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 28694 chr8 130727386 130727490 + 0 NA Intergenic Intergenic -283778 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 2436 chr1 203628762 203628900 + 0 NA intron (NM_001684, intron 1 of 20) intron (NM_001684, intron 1 of 20) 2044 NM_001684 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 26060 chr7 36497337 36497476 + 0 NA Intergenic AluSz|SINE|Alu 102714 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 8424 chr13 80341292 80341457 + 0 NA promoter-TSS (NM_005842) promoter-TSS (NM_005842) -259 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 24758 chr6 63806346 63806440 + 0 NA intron (NM_001292009, intron 36 of 43) intron (NM_001292009, intron 36 of 43) 159867 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 6390 chr11 132858363 132858435 + 0 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 85238 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 4019 chr10 86377281 86377385 + 0 NA Intergenic CpG -10840 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 6245 chr11 122803355 122803497 + 0 NA intron (NM_032873, intron 11 of 13) intron (NM_032873, intron 11 of 13) -35072 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T-cell molecule protein-coding 17756 chr20 22691835 22691939 + 0 NA Intergenic Intergenic -84370 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 23035 chr5 113267028 113267169 + 0 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 27817 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 mutated in colorectal cancers protein-coding 22246 chr5 14156680 14156784 + 0 NA intron (NR_134469, intron 1 of 56) intron (NR_134469, intron 1 of 56) 13030 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 5416 chr11 63938774 63938885 + 0 NA promoter-TSS (NM_024771) promoter-TSS (NM_024771) -141 NM_024771 79829 Hs.523753 NM_024771 ENSG00000110583 NAA40 NAT11|PATT1 N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding 2882 chr1 228043564 228043647 + 0 NA intron (NM_033131, intron 2 of 3) intron (NM_033131, intron 2 of 3) 36583 NM_033131 89780 Hs.336930 NM_033131 ENSG00000154342 WNT3A - Wnt family member 3A protein-coding 20213 chr3 135908312 135908472 + 0 NA Intergenic L3|LINE|CR1 -57281 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 14326 chr19 29715106 29715166 + 0 NA promoter-TSS (NM_001031726) promoter-TSS (NM_001031726) -80 NM_001282929 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 574 chr1 33050241 33050345 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -13382 NM_001319140 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 7874 chr12 127083522 127083605 + 0 NA Intergenic L1ME3A|LINE|L1 -23166 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 18414 chr21 6369897 6370048 + 0 NA Intergenic Intergenic 90110 NM_001321072 875 Hs.533013 NM_000071 ENSG00000160200 CBS HIP4 cystathionine-beta-synthase protein-coding 30509 chrX 14029722 14029863 + 0 NA 5' UTR (NM_001042479, exon 1 of 5) 5' UTR (NM_001042479, exon 1 of 5) 124 NM_017856 54960 Hs.592237 NM_017856 ENSG00000046647 GEMIN8 FAM51A1 gem nuclear organelle associated protein 8 protein-coding 3397 chr10 21534112 21534264 + 0 NA promoter-TSS (NR_136736) promoter-TSS (NR_136736) 16 NR_136736 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 protein-coding 660 chr1 38046986 38047052 + 0 NA promoter-TSS (NM_002699) promoter-TSS (NM_002699) -241 NM_002699 5453 Hs.1837 NM_002699 ENSG00000185668 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 14748 chr19 51887965 51888119 + 0 NA promoter-TSS (NR_024181) promoter-TSS (NR_024181) 17 NR_110733 101928571 Hs.553920 NR_110733 ENSG00000268095 ZNF649-AS1 - ZNF649 antisense RNA 1 ncRNA 25634 chr7 6483388 6483448 + 0 NA intron (NM_006854, intron 1 of 4) intron (NM_006854, intron 1 of 4) 800 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 18590 chr21 45373049 45373152 + 0 NA Intergenic Intergenic -31110 NR_103811 388830 Hs.592162 NR_103811 ENSG00000237664 LINC00316 C21orf111|NCRNA00316|PRED59 long intergenic non-protein coding RNA 316 ncRNA 16690 chr2 174971993 174972064 + 0 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 33225 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 28554 chr8 122689771 122689912 + 0 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 4265 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 977 chr1 61078040 61078170 + 0 NA intron (NM_001145511, intron 1 of 10) intron (NM_001145511, intron 1 of 10) 831 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 17065 chr2 215189539 215189643 + 0 NA Intergenic L2c|LINE|L2 -51163 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 15531 chr2 50953112 50953217 + 0 NA intron (NM_001330077, intron 2 of 21) intron (NM_001330077, intron 2 of 21) 79372 NM_001330085 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 9237 chr14 66507923 66508083 + 0 NA 5' UTR (NM_020806, exon 1 of 23) 5' UTR (NM_020806, exon 1 of 23) 596 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 30607 chrX 37644518 37644622 + 0 NA intron (NM_198511, intron 1 of 5) intron (NM_198511, intron 1 of 5) -41186 NM_021083 7504 Hs.78919 NM_021083 ENSG00000047597 XK KX|NA|NAC|X1k|XKR1 X-linked Kx blood group protein-coding 4067 chr10 91652560 91652733 + 0 NA Intergenic Intergenic -19545 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 21784 chr4 127782233 127782339 + 0 NA promoter-TSS (NM_014278) promoter-TSS (NM_014278) 77 NM_001317383 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 15512 chr2 47632125 47632229 + 0 NA Intergenic Intergenic -61846 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 7349 chr12 84911373 84911477 + 0 NA intron (NM_182767, intron 1 of 11) CpG 1404 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 27760 chr8 43056522 43056532 + 0 NA non-coding (NR_033698, exon 1 of 8) non-coding (NR_033698, exon 1 of 8) 228 NM_002027 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 21942 chr4 157271246 157271350 + 0 NA intron (NM_001083620, intron 2 of 15) MER21B|LTR|ERVL 50630 NM_001083620 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 17783 chr20 23421495 23421625 + 0 NA promoter-TSS (NR_104266) promoter-TSS (NR_104266) -41 NR_104266 63908 Hs.269471 NM_022080 ENSG00000125814 NAPB SNAP-BETA|SNAPB NSF attachment protein beta protein-coding 10002 chr15 43913460 43913519 + 0 NA intron (NM_032892, intron 4 of 13) intron (NM_032892, intron 4 of 13) -35318 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 15934 chr2 88016713 88016817 + 0 NA Intergenic CpG -30975 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2-like and GRIP domain containing 1 protein-coding 27154 chr7 142910297 142910436 + 0 NA intron (NM_019841, intron 13 of 14) L3|LINE|CR1 23357 NM_019841 56302 Hs.283369 NM_019841 ENSG00000127412 TRPV5 CAT2|ECAC1|OTRPC3 transient receptor potential cation channel subfamily V member 5 protein-coding 25457 chr6 163392120 163392257 + 0 NA Intergenic Intergenic 21762 NR_037593 100526820 Hs.644159 NR_037593 ENSG00000270419 CAHM LINC00468 colon adenocarcinoma hypermethylated (non-protein coding) ncRNA 10579 chr15 82942761 82942854 + 0 NA intron (NM_199330, intron 1 of 8) intron (NM_199330, intron 1 of 8) 9917 NM_004839 9455 Hs.578443 NM_004839 ENSG00000103942 HOMER2 ACPD|CPD|DFNA68|HOMER-2|VESL-2 homer scaffolding protein 2 protein-coding 2299 chr1 197201267 197201319 + 0 NA promoter-TSS (NR_135153) promoter-TSS (NR_135153) -169 NM_001257965 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs 1, cell polarity complex component protein-coding 11816 chr16 87461604 87461732 + 0 NA intron (NM_015144, intron 1 of 12) intron (NM_015144, intron 1 of 12) 30186 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 2820 chr1 224624045 224624059 + 0 NA intron (NR_136287, intron 1 of 4) L1ME3Cz|LINE|L1 7575 NM_152495 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 22630 chr5 65198941 65199045 + 0 NA intron (NR_135689, intron 21 of 25) intron (NR_135689, intron 21 of 25) 282927 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 604 chr1 35031722 35031742 + 0 NA intron (NM_007167, intron 1 of 15) CpG 236 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 22989 chr5 107869806 107869910 + 0 NA intron (NM_001163315, intron 8 of 8) intron (NM_001163315, intron 8 of 8) -198963 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 28748 chr8 135004811 135004851 + 0 NA Intergenic Intergenic 154896 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 26549 chr7 87926667 87926771 + 0 NA Intergenic L1PB1|LINE|L1 -7424 NM_001324417 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|MDC2 ADAM metallopeptidase domain 22 protein-coding 18952 chr22 41381706 41381847 + 0 NA promoter-TSS (NM_003216) promoter-TSS (NM_003216) -153 NM_003216 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF, PAR bZIP transcription factor protein-coding 15362 chr2 37561800 37561910 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 110344 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 14518 chr19 44113141 44113285 + 0 NA promoter-TSS (NR_033341) promoter-TSS (NR_033341) -30 NR_033341 100379224 Hs.585869 NR_033341 ENSG00000186019 LOC100379224 - uncharacterized LOC100379224 ncRNA 21101 chr4 932282 932386 + 0 NA promoter-TSS (NM_005255) promoter-TSS (NM_005255) -53 NM_001297427 84286 Hs.478936 NM_032326 ENSG00000127419 TMEM175 hTMEM175 transmembrane protein 175 protein-coding 4880 chr11 14030107 14030211 + 0 NA intron (NM_006108, intron 2 of 15) MamTip3|DNA|hAT-Tip100 67522 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 16631 chr2 169820252 169820356 + 0 NA intron (NM_014168, intron 3 of 6) intron (NM_014168, intron 3 of 6) 4627 NM_014168 29081 Hs.470553 NM_014168 ENSG00000138382 METTL5 HSPC133 methyltransferase like 5 protein-coding 29042 chr9 33453055 33453136 + 0 NA Intergenic Intergenic -5462 NM_001318144 360 Hs.234642 NM_004925 ENSG00000165272 AQP3 AQP-3|GIL aquaporin 3 (Gill blood group) protein-coding 19822 chr3 107522883 107523011 + 0 NA promoter-TSS (NM_001142568) promoter-TSS (NM_001142568) 11 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX, HMG-box containing protein-coding 19559 chr3 53160724 53160876 + 0 NA promoter-TSS (NM_006254) promoter-TSS (NM_006254) -407 NM_212539 5580 Hs.155342 NM_006254 ENSG00000163932 PRKCD ALPS3|CVID9|MAY1|PKCD|nPKC-delta protein kinase C delta protein-coding 15851 chr2 75592060 75592201 + 0 NA Intergenic Intergenic -22408 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 30596 chrX 30653091 30653311 + 0 NA promoter-TSS (NM_000167) promoter-TSS (NM_000167) -158 NM_203391 2710 Hs.1466 NM_000167 ENSG00000198814 GK GK1|GKD glycerol kinase protein-coding 7879 chr12 128823947 128824121 + 0 NA promoter-TSS (NM_145648) promoter-TSS (NM_145648) -38 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 5734 chr11 80856182 80856286 + 0 NA Intergenic Intergenic -93431 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 27235 chr7 151520061 151520165 + 0 NA promoter-TSS (NM_005614) promoter-TSS (NM_005614) -189 NM_005614 6009 Hs.283521 NM_005614 ENSG00000106615 RHEB RHEB2 Ras homolog enriched in brain protein-coding 13961 chr19 4800916 4801026 + 0 NA Intergenic Intergenic 9255 NM_018708 55527 Hs.515082 NM_018708 ENSG00000141965 FEM1A EPRAP fem-1 homolog A protein-coding 1857 chr1 156661418 156661522 + 0 NA Intergenic Intergenic 15927 NM_006617 10763 Hs.527971 NM_006617 ENSG00000132688 NES Nbla00170 nestin protein-coding 360 chr1 23799570 23799694 + 0 NA promoter-TSS (NM_001127621) promoter-TSS (NM_001127621) -62 NM_001127621 2582 Hs.632380 NM_000403 ENSG00000117308 GALE SDR1E1 UDP-galactose-4-epimerase protein-coding 15323 chr2 32277797 32277968 + 0 NA promoter-TSS (NM_032312) promoter-TSS (NM_032312) -7 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 12158 chr17 17280744 17280828 + 0 NA promoter-TSS (NM_001199125) promoter-TSS (NM_001199125) -88 NM_001199125 8533 Hs.6076 NM_003653 ENSG00000141030 COPS3 CSN3|SGN3 COP9 signalosome subunit 3 protein-coding 28457 chr8 116423947 116424051 + 0 NA Intergenic Intergenic -98940 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 23712 chr5 172006914 172007059 + 0 NA promoter-TSS (NM_012300) promoter-TSS (NM_012300) -113 NM_033645 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 17676 chr20 17314408 17314512 + 0 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 87508 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 9357 chr14 73756612 73756716 + 0 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -2083 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 29058 chr9 34620501 34620613 + 0 NA promoter-TSS (NM_007234) promoter-TSS (NM_007234) -34 NM_001281425 11258 Hs.511768 NM_007234 ENSG00000137100 DCTN3 DCTN-22|DCTN22 dynactin subunit 3 protein-coding 5798 chr11 86515831 86515935 + 0 NA intron (NM_001014811, intron 3 of 13) intron (NM_001014811, intron 3 of 13) 141147 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 23908 chr6 3432117 3432221 + 0 NA 5' UTR (NM_021945, exon 2 of 11) 5' UTR (NM_021945, exon 2 of 11) 12844 NR_104448 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 3082 chr1 241707118 241707241 + 0 NA intron (NM_144625, intron 7 of 26) L2a|LINE|L2 54901 NM_144625 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 14634 chr19 47778596 47778779 + 0 NA 5' UTR (NM_003009, exon 1 of 6) 5' UTR (NM_003009, exon 1 of 6) 102 NM_003009 6415 Hs.631549 NM_003009 ENSG00000178980 SELENOW SEPW1|selW selenoprotein W protein-coding 21874 chr4 145954967 145955071 + 0 NA Intergenic Intergenic -16059 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 4595 chr10 127012804 127012940 + 0 NA intron (NM_001380, intron 12 of 51) intron (NM_001380, intron 12 of 51) 107463 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 11511 chr16 67846655 67846771 + 0 NA promoter-TSS (NM_005796) promoter-TSS (NM_005796) -19 NM_005796 10204 Hs.356630 NM_005796 ENSG00000102898 NUTF2 NTF-2|NTF2|PP15 nuclear transport factor 2 protein-coding 20895 chr3 188295138 188295338 + 0 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 69833 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 18921 chr22 39448612 39448740 + 0 NA Intergenic Intergenic -8644 NM_002409 4248 Hs.276808 NM_002409 ENSG00000128268 MGAT3 GNT-III|GNT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding 19446 chr3 45689218 45689314 + 0 NA promoter-TSS (NM_014016) promoter-TSS (NM_014016) 25 NM_001319072 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 suppressor of actin mutations 1-like (yeast) protein-coding 9903 chr15 39196161 39196304 + 0 NA Intergenic Intergenic -54437 NR_144507 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 12415 chr17 38443731 38443861 + 0 NA intron (NM_001199417, intron 1 of 23) intron (NM_001199417, intron 1 of 23) 15320 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 22037 chr4 176194037 176194141 + 0 NA intron (NM_144644, intron 1 of 5) MER44C|DNA|TcMar-Tigger 1582 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 353 chr1 23562395 23562544 + 0 NA Intergenic Intergenic -2675 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 24487 chr6 37137584 37137695 + 0 NA Intergenic Intergenic -32507 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 3633 chr10 44981290 44981400 + 0 NA intron (NM_032023, intron 3 of 10) L1MB1|LINE|L1 -2463 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 C10orf10 DEPP|FIG|Fseg chromosome 10 open reading frame 10 protein-coding 5774 chr11 85743159 85743259 + 0 NA intron (NM_001289608, intron 3 of 18) intron (NM_001289608, intron 3 of 18) 14860 NM_001162951 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 14726 chr19 50804907 50805056 + 0 NA promoter-TSS (NM_032712) promoter-TSS (NM_032712) -128 NM_001290155 84798 Hs.256301 NM_032712 ENSG00000167747 C19orf48 - chromosome 19 open reading frame 48 protein-coding 3944 chr10 77513824 77513989 + 0 NA intron (NM_001322832, intron 1 of 27) intron (NM_001322832, intron 1 of 27) 123913 NM_001322837 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 2409 chr1 202342003 202342146 + 0 NA promoter-TSS (NM_014176) promoter-TSS (NM_014176) -108 NM_001310326 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 25528 chr7 914151 914255 + 0 NA intron (NM_001284308, intron 4 of 10) intron (NM_001284308, intron 4 of 10) 6686 NM_001284311 11033 Hs.602573 NM_006869 ENSG00000105963 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 16012 chr2 99490172 99490206 + 0 NA promoter-TSS (NM_001037872) promoter-TSS (NM_001037872) -133 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 4189 chr10 98460928 98461079 + 0 NA intron (NM_021828, intron 11 of 11) intron (NM_021828, intron 11 of 11) -14040 NM_001322481 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 30135 chr9 127225039 127225095 + 0 NA Intergenic CpG -38595 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 22638 chr5 65774510 65774614 + 0 NA intron (NM_020726, intron 3 of 12) intron (NM_020726, intron 3 of 12) 52366 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 11776 chr16 84699905 84700012 + 0 NA promoter-TSS (NM_005153) promoter-TSS (NM_005153) 9 NM_005153 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 9729 chr14 103715459 103715589 + 0 NA promoter-TSS (NM_001198953) promoter-TSS (NM_001198953) -38 NM_001100119 7517 Hs.592325 NM_005432 ENSG00000126215 XRCC3 CMM6 X-ray repair cross complementing 3 protein-coding 501 chr1 29570122 29570202 + 0 NA Intergenic Intergenic -220048 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 23090 chr5 119418856 119418957 + 0 NA Intergenic L2a|LINE|L2 -33537 NM_000414 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 22157 chr5 1937070 1937174 + 0 NA Intergenic Intergenic 49791 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 12464 chr17 40501603 40501750 + 0 NA promoter-TSS (NM_032865) promoter-TSS (NM_032865) -74 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 12285 chr17 29241136 29241240 + 0 NA Intergenic Intergenic -5669 NM_005208 1411 Hs.46275 NM_005208 ENSG00000108255 CRYBA1 CRYB1|CTRCT10 crystallin beta A1 protein-coding 5944 chr11 100625186 100625205 + 0 NA Intergenic Intergenic -62481 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 29890 chr9 112325318 112325422 + 0 NA intron (NM_001244897, intron 1 of 13) MER61D|LTR|ERV1 7656 NM_001244898 9991 Hs.269988 NM_005156 ENSG00000119314 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 17412 chr2 242088529 242088717 + 0 NA promoter-TSS (NR_130700) promoter-TSS (NR_130700) -10 NR_130700 728323 Hs.380737 NR_024437 LINC01881 - long intergenic non-protein coding RNA 1881 ncRNA 28910 chr9 6008534 6008658 + 0 NA promoter-TSS (NM_001017969) promoter-TSS (NM_001017969) -593 NM_001017969 158358 Hs.535060 NM_001017969 ENSG00000183354 KIAA2026 - KIAA2026 protein-coding 21499 chr4 80921598 80921702 + 0 NA intron (NM_152770, intron 4 of 5) L2c|LINE|L2 -109315 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 9188 chr14 63728121 63728225 + 0 NA promoter-TSS (NM_030791) promoter-TSS (NM_030791) -78 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 14203 chr19 15640678 15640794 + 0 NA promoter-TSS (NM_000896) promoter-TSS (NM_000896) -161 NM_001199209 4051 Hs.106242 NM_000896 ENSG00000186529 CYP4F3 CPF3|CYP4F|LTB4H cytochrome P450 family 4 subfamily F member 3 protein-coding 29384 chr9 83538686 83538816 + 0 NA promoter-TSS (NM_001244959) promoter-TSS (NM_001244959) -318 NM_174938 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 27595 chr8 27334697 27334837 + 0 NA intron (NM_173175, intron 1 of 29) intron (NM_173175, intron 1 of 29) 9203 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 626 chr1 36188259 36188377 + 0 NA Intergenic Intergenic -32265 NM_001270895 27095 Hs.523131 NM_014408 ENSG00000054116 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 29579 chr9 94097893 94097997 + 0 NA exon (NM_001253830, exon 7 of 10) exon (NM_001253830, exon 7 of 10) 13516 NM_001253829 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 25844 chr7 22822800 22822933 + 0 NA promoter-TSS (NM_019059) promoter-TSS (NM_019059) -14 NM_019059 54543 Hs.112318 NM_019059 ENSG00000196683 TOMM7 TOM7 translocase of outer mitochondrial membrane 7 protein-coding 16367 chr2 135741582 135741710 + 0 NA promoter-TSS (NM_014607) promoter-TSS (NM_014607) 27 NM_014607 23190 Hs.591242 NM_014607 ENSG00000144224 UBXN4 UBXD2|UBXDC1|erasin UBX domain protein 4 protein-coding 15953 chr2 95122008 95122112 + 0 NA promoter-TSS (NM_001321995) promoter-TSS (NM_001321995) -33 NM_001321996 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 6175 chr11 118938523 118938627 + 0 NA Intergenic L2|LINE|L2 -17723 NM_006760 7379 Hs.379613 NM_006760 ENSG00000110375 UPK2 UP2|UPII uroplakin 2 protein-coding 19257 chr3 23916971 23917090 + 0 NA promoter-TSS (NM_001253383) promoter-TSS (NM_001253383) 16 NM_020345 28512 Hs.173202 NM_020345 ENSG00000197885 NKIRAS1 KBRAS1|kappaB-Ras1 NFKB inhibitor interacting Ras like 1 protein-coding 17671 chr20 16528209 16528313 + 0 NA intron (NM_001199866, intron 2 of 22) intron (NM_001199866, intron 2 of 22) 45173 NM_024704 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 11128 chr16 22813433 22813537 + 0 NA Intergenic CpG -1054 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 25795 chr7 20031122 20031185 + 0 NA intron (NR_110114, intron 2 of 5) intron (NR_110114, intron 2 of 5) 109273 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 25691 chr7 12660558 12660663 + 0 NA Intergenic HERVH-int|LTR|ERV1 -26217 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 25349 chr6 151668962 151669079 + 0 NA Intergenic Intergenic -21476 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 18976 chr22 42615425 42615454 + 0 NA promoter-TSS (NM_001278657) promoter-TSS (NM_001278657) 194 NR_029422 267010 Hs.574857 NR_029422 ENSG00000276027 RNU12 RNU12-1|RNU12L|RNU12P|dJ222E13.7 RNA, U12 small nuclear snRNA 20604 chr3 169146472 169146576 + 0 NA promoter-TSS (NM_001105077) promoter-TSS (NM_001105077) 88 NM_001105078 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 3614 chr10 43356056 43356223 + 0 NA Intergenic LTR8|LTR|ERV1 -15505 NM_001184963 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 3057 chr1 239386594 239386629 + 0 NA promoter-TSS (NM_001347716) promoter-TSS (NM_001347716) -319 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 29055 chr9 34458494 34458632 + 0 NA promoter-TSS (NM_001184940) promoter-TSS (NM_001184940) 7 NM_147202 203259 Hs.493771 NM_147202 ENSG00000164970 FAM219A C9orf25 family with sequence similarity 219 member A protein-coding 25066 chr6 118651507 118651636 + 0 NA 5' UTR (NM_206921, exon 1 of 6) 5' UTR (NM_206921, exon 1 of 6) 286 NM_001042475 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 30985 chrX 115345444 115345568 + 0 NA Intergenic Intergenic 55789 NM_016383 51213 Hs.242183 NM_016383 ENSG00000102021 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 24427 chr6 34249039 34249162 + 0 NA promoter-TSS (NM_001008703) promoter-TSS (NM_001008703) 8 NM_001008703 221491 Hs.381300 NM_178508 ENSG00000186577 C6orf1 LBH chromosome 6 open reading frame 1 protein-coding 7026 chr12 52217402 52217513 + 0 NA intron (NR_027358, intron 3 of 4) intron (NR_027358, intron 3 of 4) 6527 NR_027358 283404 Hs.662443 NR_027358 ENSG00000258279 LINC00592 - long intergenic non-protein coding RNA 592 ncRNA 3812 chr10 68956076 68956180 + 0 NA promoter-TSS (NM_004728) promoter-TSS (NM_004728) 5 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 29966 chr9 115810321 115810411 + 0 NA Intergenic L1MC4|LINE|L1 -66127 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 10009 chr15 44558050 44558207 + 0 NA intron (NM_003758, intron 6 of 7) intron (NM_003758, intron 6 of 7) 21060 NM_003758 8669 Hs.404056 NM_003758 ENSG00000104131 EIF3J EIF3S1|eIF3-alpha|eIF3-p35 eukaryotic translation initiation factor 3 subunit J protein-coding 9310 chr14 70707367 70707549 + 0 NA intron (NR_125769, intron 3 of 3) intron (NR_125769, intron 3 of 3) 8760 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 21832 chr4 139666798 139666902 + 0 NA intron (NM_001204367, intron 1 of 4) intron (NM_001204367, intron 1 of 4) 1082 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 27088 chr7 138935571 138935675 + 0 NA intron (NM_020910, intron 1 of 19) intron (NM_020910, intron 1 of 19) 45695 NM_020910 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 3233 chr10 5618137 5618241 + 0 NA Intergenic Intergenic -22071 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 23694 chr5 170151116 170151299 + 0 NA Intergenic Intergenic 45294 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 21763 chr4 122152216 122152381 + 0 NA Intergenic CpG -18305 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 FSA|Tweek KIAA1109 protein-coding 28072 chr8 79959998 79960155 + 0 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 70195 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 21279 chr4 34159089 34159127 + 0 NA Intergenic L1MA2|LINE|L1 -119215 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 16531 chr2 159286652 159286711 + 0 NA promoter-TSS (NM_152528) promoter-TSS (NM_152528) -89 NM_001128213 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 1698 chr1 151008305 151008459 + 0 NA promoter-TSS (NM_001319998) promoter-TSS (NM_001319998) -4 NM_018379 55793 Hs.743952 NM_018379 ENSG00000143409 FAM63A MINDY-1 family with sequence similarity 63 member A protein-coding 29246 chr9 73684335 73684532 + 0 NA Intergenic MER61D|LTR|ERV1 532702 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 12289 chr17 29639430 29639559 + 0 NA intron (NM_001282129, intron 14 of 15) intron (NM_001282129, intron 14 of 15) -18071 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 26633 chr7 96085156 96085160 + 0 NA intron (NM_001278422, intron 15 of 15) intron (NM_001278422, intron 15 of 15) 134598 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 18299 chr20 56712380 56712484 + 0 NA Intergenic Intergenic 83130 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 7329 chr12 80702979 80703083 + 0 NA Intergenic Intergenic -4598 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 3820 chr10 69360844 69360967 + 0 NA intron (NM_033498, intron 6 of 20) intron (NM_033498, intron 6 of 20) 42058 NM_000188 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|hexokinase hexokinase 1 protein-coding 7227 chr12 64625600 64625646 + 0 NA intron (NR_040718, intron 1 of 3) intron (NR_040718, intron 1 of 3) -3018 NR_037515 100500856 NR_037515 ENSG00000266016 MIR548Z - microRNA 548z ncRNA 21471 chr4 77007502 77007651 + 0 NA intron (NM_001306147, intron 5 of 11) intron (NM_001306147, intron 5 of 11) 57862 NM_018243 55752 Hs.128199 NM_018243 ENSG00000138758 SEPT11 - septin 11 protein-coding 24938 chr6 98948059 98948163 + 0 NA promoter-TSS (NM_001278716) promoter-TSS (NM_001278716) -105 NR_103836 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 24628 chr6 45699790 45699897 + 0 NA Intergenic Intergenic 237754 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 23607 chr5 157925098 157925202 + 0 NA Intergenic Intergenic -65975 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 17380 chr2 239830661 239830707 + 0 NA Intergenic Intergenic 67824 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 57 chr1 3553495 3553622 + 0 NA intron (NM_001409, intron 4 of 36) intron (NM_001409, intron 4 of 36) 7232 NR_030277 693135 NR_030277 ENSG00000207776 MIR551A MIRN551A|mir-551a microRNA 551a ncRNA 9752 chr14 105162484 105162618 + 0 NA intron (NM_002226, intron 2 of 25) intron (NM_002226, intron 2 of 25) 6273 NM_145159 3714 Hs.433445 NM_002226 ENSG00000184916 JAG2 HJ2|SER2 jagged 2 protein-coding 29179 chr9 71486611 71486715 + 0 NA Intergenic Intergenic 282221 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 27199 chr7 149090683 149090804 + 0 NA promoter-TSS (NM_152411) promoter-TSS (NM_152411) 34 NM_152411 136051 Hs.729572 NM_152411 ENSG00000197362 ZNF786 - zinc finger protein 786 protein-coding 25372 chr6 154402166 154402270 + 0 NA Intergenic MER20B|DNA|hAT-Charlie -45452 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 21776 chr4 125314851 125314884 + 0 NA Intergenic CpG -1545 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 13761 chr18 70422302 70422391 + 0 NA Intergenic Intergenic -37755 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 3790 chr10 66888371 66888441 + 0 NA intron (NM_001127384, intron 7 of 17) MLT1E2|LTR|ERVL-MaLR -37628 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 3660 chr10 48471438 48471570 + 0 NA intron (NM_001347735, intron 3 of 8) L2a|LINE|L2 22145 NM_001256026 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 3435 chr10 24383304 24383382 + 0 NA intron (NM_001098500, intron 4 of 18) intron (NM_001098500, intron 4 of 18) -66090 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 20190 chr3 134213055 134213266 + 0 NA intron (NM_001005861, intron 2 of 14) intron (NM_001005861, intron 2 of 14) 37584 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor-like tyrosine kinase protein-coding 20784 chr3 182739277 182739396 + 0 NA Intergenic Intergenic -54167 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 35 chr1 2133228 2133355 + 0 NA intron (NM_001033582, intron 1 of 14) CpG 28575 NM_001033582 5590 Hs.496255 NM_002744 ENSG00000067606 PRKCZ PKC-ZETA|PKC2 protein kinase C zeta protein-coding 27040 chr7 134127293 134127425 + 0 NA promoter-TSS (NM_144648) promoter-TSS (NM_144648) 7 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 6133 chr11 116931783 116931887 + 0 NA intron (NM_025164, intron 3 of 23) intron (NM_025164, intron 3 of 23) -93885 NM_001318021 335 Hs.93194 NM_000039 ENSG00000118137 APOA1 apo(a) apolipoprotein A1 protein-coding 15914 chr2 85616066 85616170 + 0 NA promoter-TSS (NM_001256725) promoter-TSS (NM_001256725) 26 NM_001256725 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 23723 chr5 172454424 172454441 + 0 NA promoter-TSS (NM_001308175) promoter-TSS (NM_001308175) 91 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 13813 chr18 77900177 77900287 + 0 NA Intergenic Intergenic 93495 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 25320 chr6 149864287 149864414 + 0 NA promoter-TSS (NM_032832) promoter-TSS (NM_032832) -6 NM_032832 84918 Hs.408355 NM_032832 ENSG00000120256 LRP11 MANSC3|bA350J20.3 LDL receptor related protein 11 protein-coding 20573 chr3 162295482 162295586 + 0 NA Intergenic Intergenic 798726 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15 otolin 1 protein-coding 2827 chr1 225454920 225455024 + 0 NA Intergenic Intergenic -26117 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 30386 chr9 137311507 137311685 + 0 NA intron (NM_017820, intron 19 of 21) intron (NM_017820, intron 19 of 21) -9345 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 8997 chr14 51651888 51652025 + 0 NA promoter-TSS (NR_037676) promoter-TSS (NR_037676) 98 NM_152330 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 9244 chr14 67241245 67241369 + 0 NA promoter-TSS (NM_001256550) promoter-TSS (NM_001256550) 12 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 2758 chr1 221802250 221802354 + 0 NA Intergenic Intergenic 38364 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 1476 chr1 109283270 109283402 + 0 NA promoter-TSS (NM_001005290) promoter-TSS (NM_001005290) -168 NM_001032291 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 18306 chr20 57089810 57089857 + 0 NA Intergenic Intergenic -123863 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 9203 chr14 64673820 64673925 + 0 NA Intergenic Intergenic -30536 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 8405 chr13 79128237 79128341 + 0 NA Intergenic Intergenic 277932 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 19025 chr22 46455051 46455155 + 0 NA intron (NM_014246, intron 2 of 34) MLT1C|LTR|ERVL-MaLR 82067 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 2641 chr1 212608719 212608791 + 0 NA 5' UTR (NM_001674, exon 1 of 4) 5' UTR (NM_001674, exon 1 of 4) 127 NM_001206488 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 904 chr1 54488513 54488549 + 0 NA Intergenic CpG -59603 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 6739 chr12 24719593 24719697 + 0 NA Intergenic Intergenic -135477 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 30558 chrX 22135332 22135436 + 0 NA intron (NM_001282754, intron 12 of 20) intron (NM_001282754, intron 12 of 20) 37599 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 12928 chr17 71441264 71441339 + 0 NA Intergenic Intergenic -239122 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 19943 chr3 115814977 115815026 + 0 NA intron (NM_002338, intron 6 of 6) intron (NM_002338, intron 6 of 6) 191697 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 9347 chr14 73491596 73491749 + 0 NA exon (NM_024644, exon 1 of 1) exon (NM_024644, exon 1 of 1) 738 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 18667 chr22 21629348 21629462 + 0 NA exon (NM_001017964, exon 3 of 5) exon (NM_001017964, exon 3 of 5) 646 NM_001017964 150223 Hs.355952 NM_001017964 ENSG00000161179 YDJC - YdjC homolog (bacterial) protein-coding 9884 chr15 37101712 37101745 + 0 NA promoter-TSS (NM_001220482) promoter-TSS (NM_001220482) -429 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 2006 chr1 166910520 166910669 + 0 NA Intergenic Intergenic -34177 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 2245 chr1 186680345 186680370 + 0 NA promoter-TSS (NR_125801) promoter-TSS (NR_125801) 70 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 3178 chr10 1359526 1359669 + 0 NA intron (NM_018702, intron 3 of 9) intron (NM_018702, intron 3 of 9) -167033 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 24513 chr6 39114810 39114912 + 0 NA intron (NM_001304793, intron 1 of 2) CpG 325 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 25472 chr6 166541213 166541317 + 0 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 3425 NM_001318938 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 2130 chr1 178278228 178278406 + 0 NA intron (NM_170692, intron 1 of 17) MER61E|LTR|ERV1 -63154 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 22218 chr5 10595870 10595974 + 0 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 31599 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 14732 chr19 50969425 50969589 + 0 NA promoter-TSS (NM_001319949) promoter-TSS (NM_001319949) 166 NM_002774 5653 Hs.79361 NM_002774 ENSG00000167755 KLK6 Bssp|Klk7|PRSS18|PRSS9|SP59|hK6 kallikrein related peptidase 6 protein-coding 23182 chr5 130530171 130530310 + 0 NA Intergenic Intergenic 625410 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 17187 chr2 224679412 224679554 + 0 NA Intergenic L2b|LINE|L2 -94086 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 25735 chr7 16319096 16319258 + 0 NA intron (NM_001101417, intron 2 of 8) HAL1|LINE|L1 102145 NM_001101426 729920 Hs.636502 NM_001101417 ENSG00000214960 ISPD MDDGA7|MDDGC7|Nip|hCG_1745121 isoprenoid synthase domain containing protein-coding 27479 chr8 19313826 19313930 + 0 NA promoter-TSS (NM_001174159) promoter-TSS (NM_001174159) -98 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 9913 chr15 40045184 40045288 + 0 NA intron (NR_040059, intron 1 of 3) intron (NR_040059, intron 1 of 3) 5925 NR_040059 100131089 Hs.386000 NR_040059 ENSG00000248508 SRP14-AS1 - SRP14 antisense RNA1 (head to head) ncRNA 24548 chr6 42099436 42099584 + 0 NA Intergenic Intergenic 43467 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13202 chr18 657503 657607 + 0 NA promoter-TSS (NM_001071) promoter-TSS (NM_001071) -49 NM_001071 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 12443 chr17 39953431 39953535 + 0 NA Intergenic Intergenic -9490 NM_178171 284110 Hs.448873 NM_178171 ENSG00000167914 GSDMA FKSG9|GSDM|GSDM1 gasdermin A protein-coding 3713 chr10 58269080 58269210 + 0 NA promoter-TSS (NM_018464) promoter-TSS (NM_018464) 43 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 913 chr1 54971472 54971613 + 0 NA Intergenic Intergenic -9122 NM_182532 199964 Hs.663950 NM_182532 ENSG00000143001 TMEM61 - transmembrane protein 61 protein-coding 7007 chr12 51173143 51173252 + 0 NA promoter-TSS (NM_001173452) promoter-TSS (NM_001173452) -54 NM_001173453 7024 Hs.48849 NM_005653 ENSG00000135457 TFCP2 LBP1C|LSF|LSF1D|SEF|TFCP2C transcription factor CP2 protein-coding 28632 chr8 127252147 127252209 + 0 NA intron (NR_117099, intron 1 of 3) L2b|LINE|L2 7541 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 22604 chr5 61255259 61255363 + 0 NA Intergenic Intergenic -76962 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 15945 chr2 88659650 88659754 + 0 NA Intergenic Intergenic 31873 NR_135540 101928403 Hs.434326 NR_135540 ENSG00000234028 LOC101928403 - uncharacterized LOC101928403 ncRNA 22030 chr4 174682043 174682147 + 0 NA intron (NM_006529, intron 6 of 9) intron (NM_006529, intron 6 of 9) 147220 NM_001042543 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 12390 chr17 36544769 36544873 + 0 NA promoter-TSS (NM_024835) promoter-TSS (NM_024835) -67 NM_024835 79893 Hs.514116 NM_024835 ENSG00000278311 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 4313 chr10 105149538 105149642 + 0 NA intron (NM_014978, intron 9 of 26) intron (NM_014978, intron 9 of 26) -483374 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 23426 chr5 145681704 145681808 + 0 NA Intergenic Intergenic 153613 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 12515 chr17 42388510 42388637 + 0 NA promoter-TSS (NM_139276) promoter-TSS (NM_139276) -78 NM_139276 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 30681 chrX 48487456 48487584 + 0 NA Intergenic Intergenic 11499 NM_177439 24140 Hs.23170 NM_012280 ENSG00000068438 FTSJ1 CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7 FtsJ RNA methyltransferase homolog 1 (E. coli) protein-coding 2183 chr1 182107413 182107464 + 0 NA Intergenic L2c|LINE|L2 -45726 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 4801 chr11 9614072 9614232 + 0 NA Intergenic CpG 39465 NM_001143976 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 1459 chr1 108876918 108877053 + 0 NA promoter-TSS (NM_001321038) promoter-TSS (NM_001321038) 4 NM_013296 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G-protein signaling modulator 2 protein-coding 5279 chr11 57712308 57712440 + 0 NA promoter-TSS (NM_001317078) promoter-TSS (NM_001317078) -51 NM_153450 219541 Hs.43619 NM_153450 ENSG00000156603 MED19 DT2P1G7|LCMR1|MED19AS mediator complex subunit 19 protein-coding 25954 chr7 29563717 29563849 + 0 NA promoter-TSS (NM_175887) promoter-TSS (NM_175887) -28 NM_175887 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 27718 chr8 39038243 39038347 + 0 NA intron (NM_003816, intron 11 of 21) L2a|LINE|L2 41309 NM_003816 8754 Hs.591852 NM_003816 ENSG00000168615 ADAM9 CORD9|MCMP|MDC9|Mltng ADAM metallopeptidase domain 9 protein-coding 11098 chr16 20741316 20741433 + 0 NA intron (NM_017736, intron 1 of 3) CpG 590 NM_017736 55623 Hs.700004 NM_017736 ENSG00000066654 THUMPD1 Tan1 THUMP domain containing 1 protein-coding 13100 chr17 80254830 80254973 + 0 NA Intergenic L1ME3G|LINE|L1 -5960 NM_001256071 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 8437 chr13 90105311 90105477 + 0 NA intron (NR_047489, intron 3 of 5) L1MA4A|LINE|L1 14323 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 5908 chr11 95789772 95789931 + 0 NA promoter-TSS (NM_144664) promoter-TSS (NM_144664) -60 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 6153 chr11 118264363 118264418 + 0 NA 5' UTR (NM_144765, exon 1 of 5) 5' UTR (NM_144765, exon 1 of 5) 146 NM_005797 10205 Hs.116651 NM_005797 ENSG00000149573 MPZL2 EVA|EVA1 myelin protein zero like 2 protein-coding 23354 chr5 140639321 140639521 + 0 NA promoter-TSS (NM_001300980) promoter-TSS (NM_001300980) -6 NM_001300980 55374 Hs.534333 NM_018502 ENSG00000113119 TMCO6 PRO1580 transmembrane and coiled-coil domains 6 protein-coding 22752 chr5 76806111 76806132 + 0 NA Intergenic LTR64|LTR|ERV1 -12856 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 16066 chr2 105404306 105404469 + 0 NA intron (NM_201557, intron 1 of 5) intron (NM_201557, intron 1 of 5) -4720 NM_001318894 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 2041 chr1 168752284 168752388 + 0 NA Intergenic Intergenic -23132 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 1467 chr1 109197486 109197639 + 0 NA exon (NM_001267048, exon 14 of 20) exon (NM_001267048, exon 14 of 20) 11013 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 25371 chr6 154387514 154387618 + 0 NA Intergenic Intergenic -30800 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 4548 chr10 123573393 123573497 + 0 NA Intergenic Intergenic -92910 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 31071 chrX 132491365 132491370 + 0 NA Intergenic Intergenic -1399 NM_001170704 55796 Hs.105134 NM_018388 ENSG00000076770 MBNL3 CHCR|MBLX|MBLX39|MBXL muscleblind like splicing regulator 3 protein-coding 15209 chr2 26355594 26355666 + 0 NA intron (NR_137633, intron 1 of 9) intron (NR_137633, intron 1 of 9) -8813 NM_153835 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 30262 chr9 130693581 130693728 + 0 NA promoter-TSS (NR_104230) promoter-TSS (NR_104230) -106 NR_104230 23404 Hs.654643 NM_014285 ENSG00000130713 EXOSC2 RRP4|Rrp4p|hRrp4p|p7 exosome component 2 protein-coding 704 chr1 40862292 40862449 + 0 NA promoter-TSS (NM_133467) promoter-TSS (NM_133467) -24 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 5405 chr11 63681269 63681373 + 0 NA promoter-TSS (NM_006054) promoter-TSS (NM_006054) -129 NM_006054 10313 Hs.743229 NM_006054 ENSG00000133318 RTN3 ASYIP|HAP|NSPL2|NSPLII|RTN3-A1 reticulon 3 protein-coding 7060 chr12 53324879 53324994 + 0 NA Intergenic CpG -3308 NM_015665 8086 Hs.369144 NM_015665 ENSG00000094914 AAAS AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003 aladin WD repeat nucleoporin protein-coding 28805 chr8 143267332 143267436 + 0 NA promoter-TSS (NM_138465) promoter-TSS (NM_138465) -53 NM_138465 2738 Hs.400533 NM_138465 ENSG00000250571 GLI4 HKR4|ZNF928 GLI family zinc finger 4 protein-coding 10068 chr15 50149373 50149418 + 0 NA Intergenic Intergenic -30173 NM_024837 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 12500 chr17 41772347 41772451 + 0 NA intron (NM_002230, intron 1 of 13) intron (NM_002230, intron 1 of 13) 14313 NM_002230 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 9838 chr15 33126666 33126770 + 0 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) -58686 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 4478 chr10 119597006 119597133 + 0 NA promoter-TSS (NM_003252) promoter-TSS (NM_003252) -40 NR_136663 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 30537 chrX 18675028 18675152 + 0 NA Intergenic CpG -2987 NM_000330 6247 Hs.715725 NM_000330 ENSG00000102104 RS1 RS|XLRS1 retinoschisin 1 protein-coding 9164 chr14 61762269 61762398 + 0 NA promoter-TSS (NM_003082) promoter-TSS (NM_003082) -24 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 30205 chr9 128881991 128882090 + 0 NA promoter-TSS (NM_001287390) promoter-TSS (NM_001287390) 35 NM_001287390 883 Hs.495250 NM_004059 ENSG00000171097 KYAT1 CCBL1|GTK|KAT1|KATI kynurenine aminotransferase 1 protein-coding 12476 chr17 40956943 40957013 + 0 NA Intergenic Intergenic 9914 NM_213656 390792 Hs.28467 NM_213656 ENSG00000196859 KRT39 CK-39|K39|KA35 keratin 39 protein-coding 21063 chr3 196942457 196942561 + 0 NA promoter-TSS (NM_001308036) promoter-TSS (NM_001308036) -69 NM_001308036 22916 Hs.591671 NM_007362 ENSG00000114503 NCBP2 CBC2|CBP20|NIP1|PIG55 nuclear cap binding protein subunit 2 protein-coding 31141 chrX 150568352 150568528 + 0 NA promoter-TSS (NM_000252) promoter-TSS (NM_000252) -157 NM_000252 4534 Hs.655056 NM_000252 ENSG00000171100 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 12995 chr17 75124398 75124552 + 0 NA intron (NM_024585, intron 2 of 2) intron (NM_024585, intron 2 of 2) 7320 NM_001252377 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 27564 chr8 25184548 25184697 + 0 NA promoter-TSS (NM_001322810) promoter-TSS (NM_001322810) -101 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 28942 chr9 15307217 15307452 + 0 NA promoter-TSS (NM_001168339) promoter-TSS (NM_001168339) 26 NM_001168341 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 16744 chr2 179454968 179455072 + 0 NA intron (NM_001113397, intron 4 of 7) Tigger3b|DNA|TcMar-Tigger 107568 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 7373 chr12 87827726 87827897 + 0 NA Intergenic Intergenic -43100 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 11757 chr16 83898890 83898994 + 0 NA promoter-TSS (NM_012213) promoter-TSS (NM_012213) -183 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 26230 chr7 47786725 47786905 + 0 NA intron (NM_138295, intron 56 of 56) intron (NM_138295, intron 56 of 56) -8476 NM_025031 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 protein-coding 1623 chr1 143252225 143252373 + 0 NA Intergenic Intergenic 170293 NR_027354 645166 Hs.744183 NR_027354 LOC645166 - lymphocyte-specific protein 1 pseudogene pseudo 22670 chr5 68343684 68343692 + 0 NA Intergenic Intergenic 51120 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 18752 chr22 28884246 28884350 + 0 NA intron (NM_001206998, intron 1 of 8) CpG 531 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 3699 chr10 53905040 53905167 + 0 NA intron (NM_033056, intron 25 of 32) intron (NM_033056, intron 25 of 32) -581127 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 12352 chr17 34961400 34961569 + 0 NA promoter-TSS (NM_001193529) promoter-TSS (NM_001193529) 25 NM_006584 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 1926 chr1 161098253 161098412 + 0 NA promoter-TSS (NR_033385) promoter-TSS (NR_033385) -29 NR_033386 126823 Hs.507290 NM_152366 ENSG00000162755 KLHDC9 KARCA1 kelch domain containing 9 protein-coding 25219 chr6 138693143 138693238 + 0 NA intron (NR_033896, intron 1 of 3) CpG 1522 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 14472 chr19 41083716 41083837 + 0 NA Intergenic Intergenic -4675 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 14175 chr19 14006349 14006453 + 0 NA promoter-TSS (NM_002918) promoter-TSS (NM_002918) -79 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 30561 chrX 22520535 22520639 + 0 NA intron (NR_073010, intron 4 of 11) MIRb|SINE|MIR 247674 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 ZNF645 CT138|HAKAIL zinc finger protein 645 protein-coding 19878 chr3 111923519 111923545 + 0 NA intron (NM_145753, intron 5 of 16) L2b|LINE|L2 -55344 NM_018394 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 12625 chr17 48127537 48127643 + 0 NA Intergenic Intergenic 20005 NM_013323 29916 Hs.15827 NM_013323 ENSG00000002919 SNX11 - sorting nexin 11 protein-coding 17865 chr20 32358111 32358261 + 0 NA promoter-TSS (NM_015338) promoter-TSS (NM_015338) -158 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS additional sex combs like 1, transcriptional regulator protein-coding 5144 chr11 34654077 34654122 + 0 NA intron (NM_012153, intron 6 of 8) intron (NM_012153, intron 6 of 8) 21635 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 17813 chr20 25223253 25223369 + 0 NA intron (NM_001322398, intron 11 of 13) intron (NM_001322398, intron 11 of 13) -24759 NM_002862 5834 Hs.368157 NM_002862 ENSG00000100994 PYGB GPBB glycogen phosphorylase B protein-coding 1694 chr1 150876793 150876897 + 0 NA promoter-TSS (NM_001197325) promoter-TSS (NM_001197325) -77 NM_001668 405 Hs.632446 NM_001668 ENSG00000143437 ARNT HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2 aryl hydrocarbon receptor nuclear translocator protein-coding 25521 chr7 539790 539894 + 0 NA Intergenic Intergenic 19451 NR_033963 441307 Hs.521334 NR_033963 ENSG00000223855 HRAT92 - heart tissue-associated transcript 92 ncRNA 6820 chr12 31006055 31006206 + 0 NA Intergenic Intergenic -67715 NM_004399 1663 Hs.443960 NM_004399 ENSG00000013573 DDX11 CHL1|CHLR1|KRG2|WABS DEAD/H-box helicase 11 protein-coding 15818 chr2 74120545 74120562 + 0 NA Intergenic CpG 27359 NM_212552 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 3079 chr1 241640281 241640430 + 0 NA promoter-TSS (NM_014322) promoter-TSS (NM_014322) 44 NM_014322 23596 Hs.409081 NM_014322 ENSG00000054277 OPN3 ECPN|PPP1R116 opsin 3 protein-coding 27933 chr8 62192486 62192590 + 0 NA Intergenic L1M4b|LINE|L1 -56404 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D Sodium/potassium transporting ATPase interacting 3 protein-coding 481 chr1 28552885 28553018 + 0 NA promoter-TSS (NM_017846) promoter-TSS (NM_017846) -66 NR_003109 54952 Hs.533626 NM_017846 ENSG00000180098 TRNAU1AP PRO1902|SECP43|TRSPAP1 tRNA selenocysteine 1 associated protein 1 protein-coding 7728 chr12 118544658 118544799 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 168175 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 3669 chr10 50325580 50325712 + 0 NA intron (NM_147156, intron 8 of 10) intron (NM_147156, intron 8 of 10) -77036 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 16879 chr2 197435166 197435270 + 0 NA promoter-TSS (NM_001308824) promoter-TSS (NM_001308824) -125 NM_001308824 23451 Hs.632554 NM_012433 ENSG00000115524 SF3B1 Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 splicing factor 3b subunit 1 protein-coding 11537 chr16 68668358 68668514 + 0 NA intron (NM_001793, intron 2 of 15) intron (NM_001793, intron 2 of 15) 23600 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 11860 chr16 89921830 89921934 + 0 NA promoter-TSS (NM_001197181) promoter-TSS (NM_001197181) -127 NM_001197181 10381 Hs.511743 NM_006086 ENSG00000258947 TUBB3 CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4 tubulin beta 3 class III protein-coding 18073 chr20 44714814 44714918 + 0 NA promoter-TSS (NM_001323369) promoter-TSS (NM_001323369) 22 NM_001323369 8839 Hs.592145 NM_003881 ENSG00000064205 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding 16991 chr2 207338010 207338114 + 0 NA Intergenic Intergenic -68638 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 24085 chr6 14211094 14211225 + 0 NA Intergenic CpG 74295 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 11942 chr17 3754579 3754818 + 0 NA intron (NM_002208, intron 12 of 30) intron (NM_002208, intron 12 of 30) 30795 NM_031965 83903 Hs.534059 NM_031965 ENSG00000177602 GSG2 HASPIN germ cell associated 2, haspin protein-coding 7187 chr12 59055544 59055715 + 0 NA Intergenic MamRep137|DNA|TcMar-Tigger -135091 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 14154 chr19 13118093 13118212 + 0 NA promoter-TSS (NM_052876) promoter-TSS (NM_052876) -136 NM_052876 112939 Hs.531614 NM_052876 ENSG00000160877 NACC1 BEND8|BTBD14B|BTBD30|NAC-1|NAC1 nucleus accumbens associated 1 protein-coding 28013 chr8 71843881 71843985 + 0 NA promoter-TSS (NR_033651) promoter-TSS (NR_033651) -183 NR_033651 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 26116 chr7 41148719 41148842 + 0 NA Intergenic Intergenic 47176 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 11972 chr17 4833259 4833294 + 0 NA promoter-TSS (NM_001024937) promoter-TSS (NM_001024937) -64 NM_001321236 50488 Hs.443417 NM_015716 ENSG00000141503 MINK1 B55|MAP4K6|MINK|YSK2|ZC3 misshapen like kinase 1 protein-coding 25378 chr6 154734151 154734282 + 0 NA intron (NM_001286199, intron 2 of 20) CpG 838 NM_014892 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 18643 chr22 20117215 20117368 + 0 NA promoter-TSS (NM_001257994) promoter-TSS (NM_001257994) 4 NM_182984 27037 Hs.713579 NM_022727 ENSG00000099899 TRMT2A HTF9C tRNA methyltransferase 2 homolog A protein-coding 13937 chr19 3968743 3968901 + 0 NA intron (NM_001348, intron 2 of 8) intron (NM_001348, intron 2 of 8) 2301 NM_001348 1613 Hs.631844 NM_001348 ENSG00000167657 DAPK3 DLK|ZIP|ZIPK death associated protein kinase 3 protein-coding 10252 chr15 63048146 63048250 + 0 NA promoter-TSS (NM_001330344) promoter-TSS (NM_001330344) -121 NM_001330351 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 (alpha) protein-coding 26376 chr7 70599224 70599264 + 0 NA intron (NM_015570, intron 5 of 18) UCON55|DNA|TcMar-Tigger -533293 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 30871 chrX 94400587 94400748 + 0 NA Intergenic L1MA2|LINE|L1 662559 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 21674 chr4 106583758 106583827 + 0 NA Intergenic Intergenic -216357 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 29220 chr9 72557629 72557739 + 0 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 35883 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 18479 chr21 32771991 32772143 + 0 NA promoter-TSS (NM_016631) promoter-TSS (NM_016631) -33 NR_024623 54067 Hs.54725 NM_001006116 C21orf62-AS1 C21orf49 C21orf62 antisense RNA 1 ncRNA 17663 chr20 14963370 14963509 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) -33921 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 2059 chr1 170063292 170063396 + 0 NA intron (NM_014970, intron 1 of 19) LTR8B|LTR|ERV1 5571 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 28163 chr8 89611913 89612057 + 0 NA Intergenic Intergenic 145726 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 19187 chr3 13895422 13895592 + 0 NA Intergenic (GAGCG)n|Simple_repeat|Simple_repeat -15386 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A - Wnt family member 7A protein-coding 12143 chr17 16521392 16521501 + 0 NA Intergenic Intergenic -29255 NM_207387 388341 Hs.25425 NM_207387 ENSG00000181350 LRRC75A C17orf76|FAM211A leucine rich repeat containing 75A protein-coding 30102 chr9 125143560 125143725 + 0 NA promoter-TSS (NM_001144877) promoter-TSS (NM_001144877) -83 NM_001144877 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 14230 chr19 17108048 17108195 + 0 NA intron (NM_001130065, intron 2 of 39) intron (NM_001130065, intron 2 of 39) 32340 NM_004145 4650 Hs.123198 NM_004145 ENSG00000099331 MYO9B CELIAC4|MYR5 myosin IXB protein-coding 22682 chr5 69217682 69217832 + 0 NA promoter-TSS (NM_033281) promoter-TSS (NM_033281) 11 NM_033281 92259 Hs.631971 NM_033281 ENSG00000134056 MRPS36 DC47|MRP-S36 mitochondrial ribosomal protein S36 protein-coding 22352 chr5 33834535 33834639 + 0 NA intron (NM_001324512, intron 2 of 21) intron (NM_001324512, intron 2 of 21) 57605 NM_001324512 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 11060 chr16 15812294 15812409 + 0 NA intron (NM_022844, intron 3 of 41) MamTip1|DNA|hAT-Tip100 44679 NM_002474 4629 Hs.460109 NM_002474 ENSG00000133392 MYH11 AAT4|FAA4|SMHC|SMMHC myosin heavy chain 11 protein-coding 22194 chr5 9060013 9060138 + 0 NA intron (NM_003966, intron 18 of 22) intron (NM_003966, intron 18 of 22) -6180 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 13542 chr18 48997035 48997148 + 0 NA Intergenic Intergenic -46380 NM_001190821 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 14396 chr19 36528266 36528370 + 0 NA promoter-TSS (NM_001012756) promoter-TSS (NM_001012756) 28 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 2270 chr1 192551040 192551144 + 0 NA Intergenic Intergenic -24635 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 24575 chr6 42929230 42929393 + 0 NA non-coding (NR_134892, exon 1 of 5) non-coding (NR_134892, exon 1 of 5) 181 NR_134885 10695 Hs.414099 NM_006586 ENSG00000137161 CNPY3 CAG4A|ERDA5|PRAT4A|TNRC5 canopy FGF signaling regulator 3 protein-coding 23153 chr5 127649287 127649391 + 0 NA 5' UTR (NM_001048252, exon 1 of 3) 5' UTR (NM_001048252, exon 1 of 3) 318 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 10529 chr15 80059543 80059617 + 0 NA promoter-TSS (NM_001242911) promoter-TSS (NM_001242911) 12 NM_001242912 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 20293 chr3 141487543 141487702 + 0 NA intron (NM_006506, intron 1 of 23) CpG 575 NM_001303245 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 11802 chr16 86575874 86576028 + 0 NA Intergenic CpG -2558 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 6828 chr12 31326241 31326397 + 0 NA promoter-TSS (NM_001135812) promoter-TSS (NM_001135812) -94 NM_001135812 58516 Hs.505154 NM_021238 ENSG00000139146 FAM60A C12orf14|L4|TERA family with sequence similarity 60 member A protein-coding 29777 chr9 107361911 107362015 + 0 NA Intergenic L2c|LINE|L2 77194 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 22523 chr5 53333185 53333289 + 0 NA Intergenic Intergenic -147197 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 14921 chr2 3377918 3378022 + 0 NA promoter-TSS (NM_001330531) promoter-TSS (NM_001330531) -38 NM_001330530 7260 Hs.502770 NM_003310 ENSG00000032389 TSSC1 EIPR1 tumor suppressing subtransferable candidate 1 protein-coding 4852 chr11 12723889 12724063 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 49554 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 21756 chr4 121696951 121697055 + 0 NA promoter-TSS (NM_001154) promoter-TSS (NM_001154) -11 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 10370 chr15 70097866 70097984 + 0 NA promoter-TSS (NM_020908) promoter-TSS (NM_020908) -8 NM_001105192 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 9121 chr14 59688563 59688667 + 0 NA intron (NM_021136, intron 3 of 8) L1PA15-16|LINE|L1 -41595 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 9855 chr15 34343046 34343204 + 0 NA promoter-TSS (NM_001284292) promoter-TSS (NM_001284292) 36 NM_018648 55505 Hs.14317 NM_018648 ENSG00000182117 NOP10 DKCB1|NOLA3|NOP10P NOP10 ribonucleoprotein protein-coding 12249 chr17 27805709 27805721 + 0 NA Intergenic Intergenic -5186 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 30061 chr9 122453292 122453407 + 0 NA Intergenic Intergenic 24577 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 21846 chr4 142474528 142474546 + 0 NA intron (NM_003866, intron 2 of 26) L1PA14|LINE|L1 371998 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 21684 chr4 108620418 108620605 + 0 NA promoter-TSS (NM_001319234) promoter-TSS (NM_001319234) -47 NM_001319236 6164 Hs.438227 NM_000995 ENSG00000109475 RPL34 L34 ribosomal protein L34 protein-coding 27060 chr7 135292114 135292143 + 0 NA Intergenic MIRb|SINE|MIR 60149 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 5829 chr11 89381199 89381350 + 0 NA intron (NM_001143836, intron 11 of 16) intron (NM_001143836, intron 11 of 16) 109467 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 2648 chr1 212950400 212950504 + 0 NA promoter-TSS (NM_001136474) promoter-TSS (NM_001136474) -68 NM_001136474 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 12384 chr17 35930809 35930913 + 0 NA promoter-TSS (NM_001163130) promoter-TSS (NM_001163130) -85 NM_001330194 201299 Hs.194411 NM_145654 ENSG00000278023 RDM1 RAD52B RAD52 motif containing 1 protein-coding 7954 chr13 21603840 21603974 + 0 NA intron (NM_152726, intron 1 of 11) CpG 309 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 27842 chr8 53843164 53843336 + 0 NA promoter-TSS (NM_213620) promoter-TSS (NM_213620) 61 NM_015941 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 27190 chr7 148698835 148698939 + 0 NA promoter-TSS (NM_003592) promoter-TSS (NM_003592) 46 NM_003592 8454 Hs.146806 NM_003592 ENSG00000055130 CUL1 - cullin 1 protein-coding 20357 chr3 148991463 148991655 + 0 NA 5' UTR (NM_001184720, exon 1 of 7) 5' UTR (NM_001184720, exon 1 of 7) 151 NM_004130 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 17409 chr2 241702627 241702731 + 0 NA intron (NM_032329, intron 1 of 7) CpG 660 NM_001330162 84289 Hs.529172 NM_032329 ENSG00000168395 ING5 p28ING5 inhibitor of growth family member 5 protein-coding 13950 chr19 4402355 4402507 + 0 NA promoter-TSS (NM_005483) promoter-TSS (NM_005483) -232 NM_005483 10036 Hs.79018 NM_005483 ENSG00000167670 CHAF1A CAF-1|CAF1|CAF1B|CAF1P150|P150 chromatin assembly factor 1 subunit A protein-coding 4479 chr10 119651336 119651440 + 0 NA promoter-TSS (NM_004281) promoter-TSS (NM_004281) 18 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 30543 chrX 20056889 20056993 + 0 NA intron (NM_152780, intron 3 of 15) intron (NM_152780, intron 3 of 15) -39754 NR_037414 100500809 NR_037414 ENSG00000264566 MIR23C hsa-mir-23c|mir-23c microRNA 23c ncRNA 8772 chr14 26842167 26842271 + 0 NA Intergenic Intergenic -20099 NR_110033 101927062 NR_110033 ENSG00000257845 LOC101927062 - uncharacterized LOC101927062 ncRNA 24152 chr6 19417815 19417969 + 0 NA Intergenic Intergenic -31929 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 28953 chr9 18460036 18460229 + 0 NA Intergenic Intergenic -13949 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 3327 chr10 14838093 14838220 + 0 NA promoter-TSS (NM_001029954) promoter-TSS (NM_001029954) -4 NM_001278205 51182 Hs.534169 NM_016299 ENSG00000187522 HSPA14 HSP70-4|HSP70L1 heat shock protein family A (Hsp70) member 14 protein-coding 5535 chr11 66789841 66789967 + 0 NA intron (NM_001302084, intron 3 of 14) intron (NM_001302084, intron 3 of 14) 45168 NM_024650 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 20014 chr3 121545988 121546110 + 0 NA promoter-TSS (NM_199420) promoter-TSS (NM_199420) -43 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 19474 chr3 48599280 48599422 + 0 NA intron (NM_003365, intron 12 of 12) intron (NM_003365, intron 12 of 12) -4191 NM_000094 1294 Hs.476218 NM_000094 ENSG00000114270 COL7A1 EBD1|EBDCT|EBR1|NDNC8 collagen type VII alpha 1 chain protein-coding 23375 chr5 141636825 141637000 + 0 NA promoter-TSS (NM_001130029) promoter-TSS (NM_001130029) -38 NM_173828 285613 Hs.120094 NM_173828 ENSG00000164620 RELL2 C5orf16 RELT like 2 protein-coding 13518 chr18 47749288 47749330 + 0 NA Intergenic Intergenic 181290 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 2263 chr1 191528327 191528514 + 0 NA Intergenic LTR42|LTR|ERVL -630042 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G-protein signaling 18 protein-coding 10958 chr16 4693420 4693583 + 0 NA promoter-TSS (NM_001193452) promoter-TSS (NM_001193452) -192 NM_032349 84309 Hs.513315 NM_032349 ENSG00000168101 NUDT16L1 SDOS nudix hydrolase 16 like 1 protein-coding 17259 chr2 231052904 231053008 + 0 NA Intergenic CpG -3908 NM_001191037 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 5302 chr11 59058563 59058643 + 0 NA promoter-TSS (NR_033853) promoter-TSS (NR_033853) -151 NR_033853 283194 NR_033853 ENSG00000255240 LOC283194 - uncharacterized LOC283194 ncRNA 30869 chrX 87517561 87517656 + 0 NA promoter-TSS (NM_057162) promoter-TSS (NM_057162) -104 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 13472 chr18 44090570 44090594 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 441115 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 15856 chr2 75710623 75710773 + 0 NA promoter-TSS (NM_001201334) promoter-TSS (NM_001201334) -92 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 16734 chr2 178413848 178413990 + 0 NA non-coding (NR_110205, exon 1 of 4) non-coding (NR_110205, exon 1 of 4) 260 NR_110205 101927027 Hs.715694 NR_110204 ENSG00000223960 LOC101927027 - uncharacterized LOC101927027 ncRNA 17642 chr20 13412940 13413065 + 0 NA intron (NM_001323603, intron 14 of 14) MIRc|SINE|MIR -173315 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 23957 chr6 7058579 7058683 + 0 NA Intergenic Intergenic -48966 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 17200 chr2 226115221 226115375 + 0 NA Intergenic Intergenic -27496 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 9679 chr14 100747038 100747142 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 20225 NM_001317172 8788 Hs.116631 NM_003836 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta like non-canonical Notch ligand 1 protein-coding 2071 chr1 172532993 172533097 + 0 NA promoter-TSS (NM_014283) promoter-TSS (NM_014283) -73 NM_001282751 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 13503 chr18 46104267 46104371 + 0 NA promoter-TSS (NM_138443) promoter-TSS (NM_138443) -13 NM_138443 115106 Hs.436617 NM_138443 ENSG00000152240 HAUS1 CCDC5|HEI-C|HEIC|HsT1461 HAUS augmin like complex subunit 1 protein-coding 25650 chr7 7201674 7201778 + 0 NA intron (NM_020156, intron 1 of 3) L1PA5|LINE|L1 19111 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 28269 chr8 98045555 98045666 + 0 NA promoter-TSS (NM_000989) promoter-TSS (NM_000989) -20 NM_000989 6156 Hs.400295 NM_000989 ENSG00000156482 RPL30 L30 ribosomal protein L30 protein-coding 20760 chr3 181851160 181851273 + 0 NA Intergenic Intergenic -101148 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 24853 chr6 82408940 82409044 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 44748 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 18254 chr20 53773903 53774028 + 0 NA Intergenic MIRb|SINE|MIR 101744 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 12659 chr17 50064775 50064936 + 0 NA intron (NM_002204, intron 3 of 25) intron (NM_002204, intron 3 of 25) 8887 NM_002204 3675 Hs.265829 NM_002204 ENSG00000005884 ITGA3 CD49C|FRP-2|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a integrin subunit alpha 3 protein-coding 12106 chr17 10697531 10697653 + 0 NA promoter-TSS (NM_004589) promoter-TSS (NM_004589) -18 NM_020233 56985 Hs.47668 NM_020233 ENSG00000170222 ADPRM C17orf48|MDS006|NBLA03831 ADP-ribose/CDP-alcohol diphosphatase, manganese dependent protein-coding 1443 chr1 107936634 107936786 + 0 NA intron (NM_006113, intron 1 of 26) intron (NM_006113, intron 1 of 26) -27733 NR_046653 100873946 Hs.568676 NR_046653 ENSG00000230489 VAV3-AS1 - VAV3 antisense RNA 1 ncRNA 6141 chr11 117327761 117327900 + 0 NA promoter-TSS (NM_014956) promoter-TSS (NM_014956) -25 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 16905 chr2 200406057 200406229 + 0 NA intron (NM_001282744, intron 3 of 12) L2a|LINE|L2 97193 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 7220 chr12 64222179 64222327 + 0 NA promoter-TSS (NM_001300940) promoter-TSS (NM_001300940) 43 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 29755 chr9 106432831 106432865 + 0 NA Intergenic Intergenic -168080 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 27654 chr8 31033772 31033876 + 0 NA promoter-TSS (NM_001323312) promoter-TSS (NM_001323312) -109 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B purine rich element binding protein G protein-coding 2240 chr1 185439783 185439906 + 0 NA Intergenic MIR|SINE|MIR -104805 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 9741 chr14 104816026 104816130 + 0 NA Intergenic CpG -5123 NR_024396 196872 Hs.352220 NR_024396 ENSG00000258701 LINC00638 - long intergenic non-protein coding RNA 638 ncRNA 5241 chr11 47185592 47185653 + 0 NA intron (NM_016223, intron 1 of 10) intron (NM_016223, intron 1 of 10) 259 NM_001184975 29763 Hs.334639 NM_016223 ENSG00000165912 PACSIN3 SDPIII protein kinase C and casein kinase substrate in neurons 3 protein-coding 18660 chr22 20904722 20904868 + 0 NA Intergenic Intergenic -12631 NM_005207 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 22141 chr5 693315 693419 + 0 NA promoter-TSS (NM_007030) promoter-TSS (NM_007030) 28 NM_007030 11076 Hs.481466 NM_007030 ENSG00000171368 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 4222 chr10 100535749 100535969 + 0 NA promoter-TSS (NM_017902) promoter-TSS (NM_017902) -25 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 alpha subunit inhibitor protein-coding 28947 chr9 16144661 16144765 + 0 NA Intergenic Intergenic 108394 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 7748 chr12 120264690 120264794 + 0 NA intron (NM_001080855, intron 1 of 11) intron (NM_001080855, intron 1 of 11) 1029 NM_002859 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 22776 chr5 79237454 79237558 + 0 NA exon (NM_152405, exon 1 of 11) exon (NM_152405, exon 1 of 11) 1404 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 17260 chr2 231056733 231056742 + 0 NA promoter-TSS (NM_001191037) promoter-TSS (NM_001191037) -127 NM_001191037 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 2984 chr1 234478201 234478262 + 0 NA exon (NM_005646, exon 1 of 30) exon (NM_005646, exon 1 of 30) 872 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 7930 chr13 19794690 19794834 + 0 NA Intergenic MER39|LTR|ERV1 -11743 NM_001042414 55269 Hs.213198 NM_001042414 ENSG00000121390 PSPC1 PSP1 paraspeckle component 1 protein-coding 9528 chr14 89409073 89409170 + 0 NA intron (NM_001085471, intron 2 of 6) intron (NM_001085471, intron 2 of 6) 7989 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 23590 chr5 155529647 155529653 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 515895 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 10094 chr15 51726436 51726555 + 0 NA intron (NM_001143917, intron 1 of 2) intron (NM_001143917, intron 1 of 2) 11628 NM_153374 256586 Hs.603629 NM_153374 ENSG00000140280 LYSMD2 - LysM domain containing 2 protein-coding 4347 chr10 110567256 110567449 + 0 NA promoter-TSS (NM_005445) promoter-TSS (NM_005445) -339 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 11642 chr16 75189195 75189299 + 0 NA Intergenic MER83B-int|LTR|ERV1 17927 NM_001025200 440387 Hs.610926 NM_001025200 ENSG00000168928 CTRB2 - chymotrypsinogen B2 protein-coding 10262 chr15 63833942 63834090 + 0 NA promoter-TSS (NM_003922) promoter-TSS (NM_003922) -68 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 23853 chr6 292073 292088 + 0 NA promoter-TSS (NM_001286555) promoter-TSS (NM_001286555) 23 NM_001286555 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 13446 chr18 36187409 36187502 + 0 NA promoter-TSS (NR_134605) promoter-TSS (NR_134605) -20 NR_134605 101927809 Hs.600673 NR_134605 ENSG00000260552 LOC101927809 - uncharacterized LOC101927809 ncRNA 30650 chrX 45480031 45480109 + 0 NA Intergenic L2c|LINE|L2 -25318 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 25077 chr6 121334439 121334589 + 0 NA promoter-TSS (NM_152730) promoter-TSS (NM_152730) -14 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1 TBC1 domain family member 32 protein-coding 14237 chr19 17282727 17282838 + 0 NA intron (NR_103530, intron 3 of 7) CpG-13976 1137 NM_001278443 126549 Hs.721610 NM_152363 ENSG00000160117 ANKLE1 ANKRD41|LEM3|LEMD6 ankyrin repeat and LEM domain containing 1 protein-coding 23393 chr5 142223756 142223892 + 0 NA Intergenic AluJb|SINE|Alu 94498 NR_131221 100642175 Hs.684549 NR_131221 ENSG00000281881 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 30219 chr9 129111281 129111369 + 0 NA promoter-TSS (NM_001271832) promoter-TSS (NM_001271832) 11 NM_001271832 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 3127 chr1 245091989 245092093 + 0 NA intron (NR_026587, intron 5 of 5) intron (NR_026587, intron 5 of 5) -62944 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 284 chr1 19596800 19596904 + 0 NA promoter-TSS (NM_001032363) promoter-TSS (NM_001032363) -20 NR_135054 105378614 Hs.430098 NR_135054 ENSG00000235185 LOC105378614 - uncharacterized LOC105378614 ncRNA 4151 chr10 97319224 97319307 + 0 NA promoter-TSS (NM_005479) promoter-TSS (NM_005479) 0 NM_005479 10023 Hs.126057 NM_005479 ENSG00000165879 FRAT1 - FRAT1, WNT signaling pathway regulator protein-coding 903 chr1 54421387 54421414 + 0 NA Intergenic Intergenic -15005 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 12832 chr17 63600783 63600911 + 0 NA promoter-TSS (NM_016360) promoter-TSS (NM_016360) -25 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 5397 chr11 63035774 63035911 + 0 NA Intergenic Intergenic -19997 NM_001184736 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 20916 chr3 189564052 189564156 + 0 NA Intergenic Intergenic -32642 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 18384 chr20 62365986 62366146 + 0 NA intron (NM_005560, intron 1 of 79) intron (NM_005560, intron 1 of 79) 1246 NM_005560 3911 Hs.473256 NM_005560 ENSG00000130702 LAMA5 - laminin subunit alpha 5 protein-coding 30303 chr9 132902084 132902188 + 0 NA intron (NM_000368, intron 18 of 22) MER119|DNA|hAT-Charlie 23245 NM_001316900 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 21122 chr4 2756103 2756179 + 0 NA promoter-TSS (NM_001161527) promoter-TSS (NM_001161527) -116 NM_001161527 79155 Hs.368551 NM_024309 ENSG00000168884 TNIP2 ABIN2|FLIP1|KLIP TNFAIP3 interacting protein 2 protein-coding 8286 chr13 51584840 51584969 + 0 NA intron (NM_052950, intron 1 of 11) CpG 556 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 11255 chr16 31033418 31033522 + 0 NA promoter-TSS (NM_001272095) promoter-TSS (NM_001272095) -21 NM_004604 6810 Hs.83734 NM_004604 ENSG00000103496 STX4 STX4A|p35-2 syntaxin 4 protein-coding 7094 chr12 54560552 54560656 + 0 NA promoter-TSS (NM_001165975) promoter-TSS (NM_001165975) -840 NM_001165975 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 4411 chr10 114779954 114780058 + 0 NA TTS (NR_120628) TTS (NR_120628) -11781 NM_001322884 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 16776 chr2 183078735 183078839 + 0 NA non-coding (NR_135688, exon 1 of 3) non-coding (NR_135688, exon 1 of 3) 228 NM_080876 142679 Hs.132237 NM_080876 ENSG00000162999 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 9429 chr14 77303772 77303927 + 0 NA intron (NM_013382, intron 4 of 20) L2a|LINE|L2 17033 NM_013382 29954 Hs.132989 NM_013382 ENSG00000009830 POMT2 LGMD2N|MDDGA2|MDDGB2|MDDGC2 protein O-mannosyltransferase 2 protein-coding 3891 chr10 73414069 73414173 + 0 NA promoter-TSS (NM_001156) promoter-TSS (NM_001156) -36 NM_001320879 310 Hs.631827 NM_001156 ENSG00000138279 ANXA7 ANX7|SNX|SYNEXIN annexin A7 protein-coding 13959 chr19 4723857 4723989 + 0 NA promoter-TSS (NM_139159) promoter-TSS (NM_139159) -80 NM_139159 91039 Hs.515081 NM_139159 ENSG00000142002 DPP9 DP9|DPLP9|DPRP-2|DPRP2 dipeptidyl peptidase 9 protein-coding 28834 chr8 144291492 144291596 + 0 NA promoter-TSS (NM_015201) promoter-TSS (NM_015201) -25 NM_005526 3297 Hs.530227 NM_005526 ENSG00000185122 HSF1 HSTF1 heat shock transcription factor 1 protein-coding 1847 chr1 156282806 156282947 + 0 NA promoter-TSS (NR_026678) promoter-TSS (NR_026678) 14 NM_001323615 23381 Hs.516837 NM_015327 ENSG00000198952 SMG5 EST1B|LPTS-RP1|LPTSRP1|SMG-5 SMG5, nonsense mediated mRNA decay factor protein-coding 19074 chr22_KI270737v1_random 33277 33422 + 0 NA NA (TCCAT)n|Simple_repeat|Simple_repeat NA NA 18554 chr21 41783481 41783585 + 0 NA Intergenic Intergenic -16444 NM_020639 54101 Hs.517310 NM_020639 ENSG00000183421 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor interacting serine/threonine kinase 4 protein-coding 17799 chr20 24337265 24337278 + 0 NA Intergenic Intergenic -131928 NM_024893 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 7393 chr12 89375909 89376013 + 0 NA Intergenic Intergenic -23102 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 27894 chr8 58608676 58608798 + 0 NA intron (NM_003580, intron 10 of 30) intron (NM_003580, intron 10 of 30) 50670 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 13249 chr18 8891106 8891144 + 0 NA Intergenic MER77B|LTR|ERVL 173754 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 6788 chr12 27710736 27710877 + 0 NA promoter-TSS (NM_021821) promoter-TSS (NM_021821) 33 NM_001190864 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding 7782 chr12 121712663 121712790 + 0 NA promoter-TSS (NM_001080825) promoter-TSS (NM_001080825) -26 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 30551 chrX 20969093 20969197 + 0 NA Intergenic MER50|LTR|ERV1 -405153 NM_001168649 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN connector enhancer of kinase suppressor of Ras 2 protein-coding 26428 chr7 74636290 74636423 + 0 NA Intergenic AluSz|SINE|Alu -21309 NM_032999 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 17628 chr20 12925249 12925353 + 0 NA intron (NR_109868, intron 4 of 11) intron (NR_109868, intron 4 of 11) 11662 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 9538 chr14 90331887 90332041 + 0 NA 5' UTR (NM_017970, exon 1 of 14) 5' UTR (NM_017970, exon 1 of 14) 173 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 31048 chrX 129843851 129843983 + 0 NA promoter-TSS (NM_001008222) promoter-TSS (NM_001008222) 17 NM_016032 51114 Hs.193566 NM_016032 ENSG00000188706 ZDHHC9 CGI89|CXorf11|DHHC9|MMSA1|MRXSZ|ZDHHC10|ZNF379|ZNF380 zinc finger DHHC-type containing 9 protein-coding 7012 chr12 51828056 51828145 + 0 NA intron (NM_001013690, intron 1 of 1) intron (NM_001013690, intron 1 of 1) 3817 NM_001013690 401720 Hs.648218 NM_001013690 FIGNL2 - fidgetin like 2 protein-coding 2960 chr1 232950440 232950594 + 0 NA promoter-TSS (NM_001329452) promoter-TSS (NM_001329452) -14 NM_032324 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 24204 chr6 25418912 25418979 + 0 NA intron (NM_001173977, intron 2 of 36) intron (NM_001173977, intron 2 of 36) 139517 NM_001173977 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 30765 chrX 56499559 56499663 + 0 NA Intergenic L1M1|LINE|L1 -63982 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 13895 chr19 2385349 2385401 + 0 NA Intergenic Intergenic -4396 NM_182973 360200 Hs.465560 NM_182973 ENSG00000178297 TMPRSS9 - transmembrane protease, serine 9 protein-coding 4522 chr10 121928047 121928157 + 0 NA promoter-TSS (NM_001001976) promoter-TSS (NM_001001976) -39 NM_001288735 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 4250 chr10 102401934 102402038 + 0 NA TTS (NR_073110) TTS (NR_073110) 6390 NM_001261403 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 26585 chr7 92134832 92134891 + 0 NA promoter-TSS (NM_000786) promoter-TSS (NM_000786) -116 NM_001146152 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 26394 chr7 73636458 73636607 + 0 NA Intergenic Intergenic -11989 NR_134541 51085 Hs.647055 NM_032951 ENSG00000009950 MLXIPL CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein like protein-coding 30230 chr9 129413726 129413877 + 0 NA Intergenic CpG -74859 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 1493 chr1 110339256 110339262 + 0 NA promoter-TSS (NM_022768) promoter-TSS (NM_022768) -64 NM_001201545 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 24455 chr6 35921017 35921185 + 0 NA promoter-TSS (NR_034069) promoter-TSS (NR_034069) 79 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 6186 chr11 119085004 119085039 + 0 NA 5' UTR (NM_000190, exon 1 of 14) 5' UTR (NM_000190, exon 1 of 14) 144 NM_001258209 3145 Hs.82609 NM_000190 ENSG00000256269 HMBS PBG-D|PBGD|PORC|UPS hydroxymethylbilane synthase protein-coding 29896 chr9 112718150 112718284 + 0 NA promoter-TSS (NM_021218) promoter-TSS (NM_021218) -68 NM_001329587 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 2397 chr1 202046380 202046526 + 0 NA Intergenic Intergenic 35891 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 10147 chr15 56040553 56040699 + 0 NA Intergenic Intergenic -46880 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding 4298 chr10 104121901 104122047 + 0 NA promoter-TSS (NM_145247) promoter-TSS (NM_145247) -84 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 8572 chr13 106861178 106861282 + 0 NA Intergenic AluSx4|SINE|Alu 207350 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 6412 chr11 134267021 134267191 + 0 NA Intergenic Intergenic -9275 NM_001080407 112937 Hs.721382 NM_138416 ENSG00000166105 GLB1L3 - galactosidase beta 1 like 3 protein-coding 7081 chr12 53995547 53995667 + 0 NA intron (NR_047505, intron 2 of 2) CpG 1178 NR_047505 100874364 Hs.734940 NR_047505 ENSG00000250133 HOXC-AS2 - HOXC cluster antisense RNA 2 ncRNA 24157 chr6 19837102 19837206 + 0 NA promoter-TSS (NM_001546) promoter-TSS (NM_001546) -216 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 1715 chr1 151540132 151540241 + 0 NA promoter-TSS (NM_001126337) promoter-TSS (NM_001126337) -119 NM_001126337 7286 Hs.489922 NM_020127 ENSG00000143367 TUFT1 - tuftelin 1 protein-coding 15134 chr2 20066463 20066567 + 0 NA Intergenic Intergenic -14487 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 16002 chr2 98869435 98869487 + 0 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 66760 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 15371 chr2 38011060 38011197 + 0 NA intron (NM_144713, intron 10 of 10) intron (NM_144713, intron 10 of 10) 25213 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 4247 chr10 102245307 102245411 + 0 NA promoter-TSS (NM_004193) promoter-TSS (NM_004193) -139 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 26654 chr7 98056712 98056816 + 0 NA Intergenic Intergenic -50121 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 10896 chr16 2721133 2721241 + 0 NA promoter-TSS (NM_001318395) promoter-TSS (NM_001318395) -636 NM_031948 83886 Hs.332878 NM_031948 ENSG00000172382 PRSS27 CAPH2|MPN protease, serine 27 protein-coding 18506 chr21 36060334 36060514 + 0 NA promoter-TSS (NM_001007261) promoter-TSS (NM_001007261) -60 NM_001007261 54093 Hs.606200 NM_017438 ENSG00000185917 SETD4 C21orf18|C21orf27 SET domain containing 4 protein-coding 22643 chr5 65925665 65925830 + 0 NA promoter-TSS (NM_001253701) promoter-TSS (NM_001253701) -807 NM_001253701 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 1104 chr1 69494293 69494397 + 0 NA Intergenic Intergenic -72840 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 24679 chr6 51655640 51655744 + 0 NA intron (NM_138694, intron 61 of 66) MLT1E1|LTR|ERVL-MaLR 33822 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 7120 chr12 56118037 56118196 + 0 NA promoter-TSS (NM_001303124) promoter-TSS (NM_001303124) -104 NM_001303124 84872 Hs.632706 NM_032786 ENSG00000135482 ZC3H10 ZC3HDC10 zinc finger CCCH-type containing 10 protein-coding 11031 chr16 12027203 12027299 + 0 NA intron (NM_032167, intron 3 of 20) intron (NM_032167, intron 3 of 20) 50517 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 20757 chr3 181624411 181624443 + 0 NA intron (NR_075090, intron 2 of 2) intron (NR_075090, intron 2 of 2) 14093 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 26970 chr7 128176771 128176875 + 0 NA Intergenic Intergenic -31049 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 24401 chr6 32894624 32894743 + 0 NA non-coding (NR_037178, exon 1 of 2) non-coding (NR_037178, exon 1 of 2) 507 NR_037177 100294145 Hs.559456 NR_037177 LOC100294145 - uncharacterized LOC100294145 ncRNA 7534 chr12 101862365 101862469 + 0 NA Intergenic LTR23|LTR|ERV1 -14910 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 29163 chr9 70136765 70136919 + 0 NA intron (NR_125850, intron 7 of 13) intron (NR_125850, intron 7 of 13) 39046 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 23044 chr5 114176536 114176640 + 0 NA Intergenic Intergenic -185731 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 1905 chr1 159946130 159946168 + 0 NA promoter-TSS (NM_001135050) promoter-TSS (NM_001135050) -553 NM_001135050 57549 Hs.591472 NM_020789 ENSG00000085552 IGSF9 FP18798|IGSF9A|Nrt1 immunoglobulin superfamily member 9 protein-coding 30361 chr9 136546130 136546283 + 0 NA promoter-TSS (NR_039821) promoter-TSS (NR_039821) 53 NR_039821 100616301 NR_039821 ENSG00000265181 MIR4674 - microRNA 4674 ncRNA 3203 chr10 4281064 4281167 + 0 NA Intergenic MER34A1|LTR|ERV1 -37203 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 21083 chr3 197719000 197719175 + 0 NA intron (NM_001145642, intron 1 of 20) MamRep605|LTR?|LTR? 17839 NM_001346873 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 RUN and cysteine rich domain containing beclin 1 interacting protein protein-coding 19910 chr3 113696701 113696828 + 0 NA promoter-TSS (NM_001009899) promoter-TSS (NM_001009899) -118 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 12988 chr17 75033790 75033920 + 0 NA intron (NR_110835, intron 1 of 7) intron (NR_110835, intron 1 of 7) 1288 NR_110835 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 8217 chr13 45367551 45367688 + 0 NA intron (NR_024458, intron 3 of 10) AluJr|SINE|Alu 26274 NR_024458 100190939 Hs.375766 NR_024458 TPT1-AS1 - TPT1 antisense RNA 1 ncRNA 16518 chr2 158725131 158725135 + 0 NA intron (NR_135242, intron 1 of 3) intron (NR_135242, intron 1 of 3) 9869 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 24734 chr6 56371005 56371109 + 0 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 23071 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 20135 chr3 129694346 129694481 + 0 NA intron (NM_001128224, intron 3 of 5) MER41A|LTR|ERV1 -5681 NR_033361 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 10580 chr15 82986047 82986196 + 0 NA promoter-TSS (NM_031452) promoter-TSS (NM_031452) -82 NM_031452 83640 Hs.80624 NM_031452 ENSG00000169612 FAM103A1 C15orf18|HsT19360|RAM family with sequence similarity 103 member A1 protein-coding 15274 chr2 28870292 28870426 + 0 NA promoter-TSS (NM_017910) promoter-TSS (NM_017910) -50 NM_017910 55006 Hs.468026 NM_017910 ENSG00000171103 TRMT61B - tRNA methyltransferase 61B protein-coding 10258 chr15 63331593 63331697 + 0 NA intron (NM_001218, intron 8 of 10) intron (NM_001218, intron 8 of 10) 50465 NM_001293642 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 13136 chr17 81683762 81683942 + 0 NA promoter-TSS (NM_004712) promoter-TSS (NM_004712) 72 NM_001040025 339231 Hs.658789 NM_001040025 ENSG00000214087 ARL16 - ADP ribosylation factor like GTPase 16 protein-coding 24830 chr6 79947536 79947640 + 0 NA promoter-TSS (NM_022726) promoter-TSS (NM_022726) 10 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 25823 chr7 21617248 21617363 + 0 NA intron (NM_001277115, intron 22 of 81) intron (NM_001277115, intron 22 of 81) 74090 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 11527 chr16 68448460 68448660 + 0 NA promoter-TSS (NM_018667) promoter-TSS (NM_018667) -54 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 821 chr1 46348238 46348364 + 0 NA intron (NM_199044, intron 3 of 5) L2c|LINE|L2 7123 NM_001256127 387338 Hs.163424 NM_199044 ENSG00000117481 NSUN4 SHTAP NOP2/Sun RNA methyltransferase family member 4 protein-coding 696 chr1 40040489 40040670 + 0 NA promoter-TSS (NM_001105530) promoter-TSS (NM_001105530) -4 NM_001105530 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN adenylate cyclase associated protein 1 protein-coding 24061 chr6 13335182 13335244 + 0 NA Intergenic Intergenic -6630 NM_001258457 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 14832 chr19 56403918 56404059 + 0 NA promoter-TSS (NM_001159860) promoter-TSS (NM_001159860) -26 NM_001159860 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 29952 chr9 115250822 115250926 + 0 NA intron (NM_017418, intron 2 of 7) intron (NM_017418, intron 2 of 7) 109056 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 23932 chr6 4733041 4733186 + 0 NA intron (NR_026590, intron 2 of 8) intron (NR_026590, intron 2 of 8) 26954 NR_026590 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y-like protein-coding 27600 chr8 27491055 27491217 + 0 NA promoter-TSS (NM_001256484) promoter-TSS (NM_001256484) -32 NM_001256484 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 CEH|SEH epoxide hydrolase 2 protein-coding 26625 chr7 94701573 94701677 + 0 NA Intergenic Intergenic 45300 NM_001184962 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3 paternally expressed 10 protein-coding 8651 chr13 113848970 113849074 + 0 NA intron (NM_000820, intron 2 of 14) intron (NM_000820, intron 2 of 14) 15081 NM_000820 2621 Hs.646346 NM_000820 ENSG00000183087 GAS6 AXLLG|AXSF growth arrest specific 6 protein-coding 19456 chr3 47282546 47282657 + 0 NA promoter-TSS (NM_025010) promoter-TSS (NM_025010) -239 NM_025010 23276 Hs.517946 NM_025010 ENSG00000114648 KLHL18 - kelch like family member 18 protein-coding 10849 chr16 970837 970994 + 0 NA promoter-TSS (NM_022773) promoter-TSS (NM_022773) 69 NR_033646 64788 Hs.71912 NM_022773 ENSG00000103227 LMF1 C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A lipase maturation factor 1 protein-coding 26103 chr7 40717356 40717505 + 0 NA intron (NM_024728, intron 13 of 14) MER61C|LTR|ERV1 262509 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 23943 chr6 5866771 5866909 + 0 NA Intergenic CR1-3_Croc|LINE|CR1 137204 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 22073 chr4 183098957 183099111 + 0 NA promoter-TSS (NM_024949) promoter-TSS (NM_024949) 165 NR_024008 152641 Hs.745108 NM_153008 ENSG00000251359 WWC2-AS2 C4orf38 WWC2 antisense RNA 2 ncRNA 13450 chr18 36386484 36386623 + 0 NA intron (NM_025135, intron 3 of 24) intron (NM_025135, intron 3 of 24) 88857 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 3050 chr1 238063569 238063696 + 0 NA Intergenic Intergenic -172710 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 13436 chr18 35459026 35459130 + 0 NA Intergenic Intergenic 38571 NM_001308064 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 4565 chr10 124801697 124801841 + 0 NA promoter-TSS (NM_032182) promoter-TSS (NM_032182) -16 NM_032182 23172 Hs.280695 NM_032182 ENSG00000165660 FAM175B ABRO1|KIAA0157 family with sequence similarity 175 member B protein-coding 6752 chr12 25518665 25518762 + 0 NA intron (NM_152590, intron 7 of 8) intron (NM_152590, intron 7 of 8) 34570 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 24805 chr6 75601898 75602021 + 0 NA 5' UTR (NM_001304792, exon 1 of 15) 5' UTR (NM_001304792, exon 1 of 15) 450 NM_001100409 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO1/sentrin specific peptidase 6 protein-coding 22854 chr5 89458064 89458168 + 0 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -554011 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 15192 chr2 25376953 25377092 + 0 NA TTS (NM_001320934) TTS (NM_001320934) -34432 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 1727 chr1 151976956 151977060 + 0 NA Intergenic Intergenic 17230 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 14604 chr19 46850895 46851070 + 0 NA promoter-TSS (NM_001301076) promoter-TSS (NM_001301076) 13 NM_001301078 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 sigma 1 subunit protein-coding 13854 chr19 1177929 1178033 + 0 NA Intergenic MIR|SINE|MIR -3698 NM_014963 22904 Hs.408708 NM_014963 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 protein-coding 13508 chr18 46250539 46250663 + 0 NA intron (NM_145055, intron 3 of 4) L2b|LINE|L2 76579 NM_145055 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 19062 chr22 50643697 50643801 + 0 NA Intergenic LTR8|LTR|ERV1 -15576 NM_001085427 410 Hs.88251 NM_000487 ENSG00000100299 ARSA MLD arylsulfatase A protein-coding 21858 chr4 144906564 144906593 + 0 NA Intergenic LTR40a|LTR|ERVL 190804 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 16144 chr2 112275413 112275545 + 0 NA promoter-TSS (NM_198581) promoter-TSS (NM_198581) -122 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 30290 chr9 132027144 132027248 + 0 NA intron (NM_004269, intron 2 of 7) intron (NM_004269, intron 2 of 7) 52691 NM_001253882 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 31120 chrX 141761024 141761128 + 0 NA Intergenic Intergenic -62337 NM_032417 64648 Hs.375036 NM_032417 ENSG00000196406 SPANXD CT11.4|SPANX-C|SPANX-D|SPANX-E|SPANXE|dJ171K16.1 SPANX family member D protein-coding 11480 chr16 66696711 66696862 + 0 NA promoter-TSS (NM_178818) promoter-TSS (NM_178818) -79 NM_178818 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 23299 chr5 138179090 138179124 + 0 NA promoter-TSS (NM_139199) promoter-TSS (NM_139199) 379 NM_005733 10112 Hs.718626 NM_005733 ENSG00000112984 KIF20A MKLP2|RAB6KIFL kinesin family member 20A protein-coding 7754 chr12 120474670 120474814 + 0 NA intron (NM_001037494, intron 1 of 2) intron (NM_001037494, intron 1 of 2) 4885 NM_001037494 8655 Hs.5120 NM_003746 ENSG00000088986 DYNLL1 DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1 dynein light chain LC8-type 1 protein-coding 17553 chr20 6767857 6767891 + 0 NA promoter-TSS (NM_001200) promoter-TSS (NM_001200) -224 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 1225 chr1 86396304 86396460 + 0 NA promoter-TSS (NM_001184765) promoter-TSS (NM_001184765) -40 NM_001184765 57489 Hs.149360 NM_020729 ENSG00000122417 ODF2L dJ977L11.1 outer dense fiber of sperm tails 2 like protein-coding 6203 chr11 120122304 120122452 + 0 NA intron (NM_001330382, intron 5 of 8) intron (NM_001330382, intron 5 of 8) 6535 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 16938 chr2 202761033 202761061 + 0 NA intron (NM_173511, intron 7 of 7) AluJb|SINE|Alu 68187 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 2909 chr1 229070397 229070405 + 0 NA Intergenic Intergenic 104400 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 5220 chr11 45340269 45340373 + 0 NA Intergenic Intergenic -15050 NR_120557 101928812 Hs.444059 NR_120557 ENSG00000254427 LOC101928812 - uncharacterized LOC101928812 ncRNA 17615 chr20 11799550 11799710 + 0 NA Intergenic L1M4|LINE|L1 71085 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 25613 chr7 5995748 5995791 + 0 NA intron (NM_001322007, intron 6 of 13) intron (NM_001322007, intron 6 of 13) 13259 NM_001322005 5395 Hs.632637 NM_000535 ENSG00000122512 PMS2 HNPCC4|MLH4|PMS2CL|PMSL2 PMS1 homolog 2, mismatch repair system component protein-coding 21819 chr4 139014437 139014541 + 0 NA Intergenic Intergenic -1270 NM_012118 25819 Hs.639842 NM_012118 ENSG00000151014 NOCT CCR4L|CCRN4L|Ccr4c|NOC nocturnin protein-coding 20696 chr3 176789299 176789451 + 0 NA Intergenic Intergenic 27626 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 13614 chr18 54880818 54880972 + 0 NA intron (NM_004163, intron 3 of 5) intron (NM_004163, intron 3 of 5) 52418 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 10517 chr15 79265290 79265394 + 0 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) -17462 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 3365 chr10 17923880 17923984 + 0 NA Intergenic Intergenic -27907 NM_001145195 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 20078 chr3 126084095 126084244 + 0 NA 5' UTR (NM_001008486, exon 1 of 11) 5' UTR (NM_001008486, exon 1 of 11) 122 NM_017836 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 24688 chr6 52420274 52420391 + 0 NA promoter-TSS (NM_001172420) promoter-TSS (NM_001172420) 136 NR_033327 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 8902 chr14 37197865 37198119 + 0 NA promoter-TSS (NM_001195297) promoter-TSS (NM_001195297) 79 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 15734 chr2 69139212 69139316 + 0 NA intron (NM_032208, intron 12 of 17) L2c|LINE|L2 35582 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 13275 chr18 12288103 12288243 + 0 NA Intergenic Intergenic -19496 NM_001303524 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 11388 chr16 55668470 55668623 + 0 NA intron (NM_001172504, intron 1 of 13) intron (NM_001172504, intron 1 of 13) -3125 NM_001172502 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 13004 chr17 75405720 75405722 + 0 NA promoter-TSS (NM_002086) promoter-TSS (NM_002086) -12 NM_203506 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 29506 chr9 90102365 90102518 + 0 NA Intergenic Intergenic -60942 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 29434 chr9 86079566 86079657 + 0 NA intron (NM_177937, intron 1 of 9) MIRb|SINE|MIR 19984 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 17225 chr2 227472011 227472158 + 0 NA promoter-TSS (NR_049888) promoter-TSS (NR_049888) -48 NR_049888 100847081 NR_049888 MIR5703 mir-5703 microRNA 5703 ncRNA 12650 chr17 49788531 49788558 + 0 NA promoter-TSS (NM_001199157) promoter-TSS (NM_001199157) -75 NM_001199155 11143 Hs.21907 NM_007067 ENSG00000136504 KAT7 HBO1|HBOA|MYST2|ZC2HC7 lysine acetyltransferase 7 protein-coding 5305 chr11 59158560 59158709 + 0 NA Intergenic Intergenic -12796 NM_001300727 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 15099 chr2 17588176 17588280 + 0 NA intron (NM_003385, intron 1 of 3) intron (NM_003385, intron 1 of 3) 47688 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 20345 chr3 146551270 146551374 + 0 NA Intergenic Intergenic -6481 NM_021105 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 4399 chr10 114413518 114413657 + 0 NA Intergenic Intergenic -8809 NM_032550 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 28896 chr9 4955951 4956055 + 0 NA Intergenic Charlie1a|DNA|hAT-Charlie -29083 NM_001322194 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 16505 chr2 157261464 157261568 + 0 NA intron (NM_014568, intron 1 of 9) intron (NM_014568, intron 1 of 9) 3918 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 655 chr1 37990064 37990168 + 0 NA promoter-TSS (NM_001320830) promoter-TSS (NM_001320830) -6 NM_006802 10946 Hs.77897 NM_006802 ENSG00000183431 SF3A3 PRP9|PRPF9|SAP61|SF3a60 splicing factor 3a subunit 3 protein-coding 22181 chr5 6713148 6713252 + 0 NA Intergenic CpG -1405 NM_006999 11044 Hs.481542 NM_006999 ENSG00000112941 PAPD7 LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 poly(A) RNA polymerase D7, non-canonical protein-coding 421 chr1 26432258 26432384 + 0 NA promoter-TSS (NM_001243564) promoter-TSS (NM_001243564) 39 NM_001319959 79947 Hs.369385 NM_024887 ENSG00000117682 DHDDS CIT|CPT|DS|HDS|RP59 dehydrodolichyl diphosphate synthase subunit protein-coding 21851 chr4 143336367 143336539 + 0 NA promoter-TSS (NM_002039) promoter-TSS (NM_002039) -377 NM_207123 2549 Hs.80720 NM_002039 ENSG00000109458 GAB1 - GRB2 associated binding protein 1 protein-coding 22773 chr5 78984692 78984703 + 0 NA intron (NM_000046, intron 1 of 7) CpG 1246 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 8033 chr13 29428372 29428555 + 0 NA promoter-TSS (NM_015233) promoter-TSS (NM_015233) -177 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated tumor suppressor candidate 2 protein-coding 10687 chr15 90233405 90233509 + 0 NA promoter-TSS (NM_001013657) promoter-TSS (NM_001013657) 590 NM_001277764 10519 Hs.715556 NM_006384 ENSG00000185043 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 protein-coding 271 chr1 18926699 18926803 + 0 NA intron (NM_001136265, intron 1 of 8) intron (NM_001136265, intron 1 of 8) -23952 NM_003748 8659 Hs.77448 NM_003748 ENSG00000159423 ALDH4A1 ALDH4|P5CD|P5CDh aldehyde dehydrogenase 4 family member A1 protein-coding 19625 chr3 64685923 64686027 + 0 NA intron (NR_038264, intron 1 of 5) CpG 1105 NR_038264 100507098 Hs.660881 NR_038264 ENSG00000241684 ADAMTS9-AS2 - ADAMTS9 antisense RNA 2 ncRNA 17233 chr2 229333339 229333443 + 0 NA Intergenic Intergenic -62050 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 23268 chr5 135492073 135492177 + 0 NA Intergenic Intergenic -39726 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 11407 chr16 56691970 56692119 + 0 NA Intergenic Intergenic 9574 NM_005952 4501 Hs.374950 NM_005952 ENSG00000187193 MT1X MT-1l|MT1 metallothionein 1X protein-coding 4822 chr11 10809070 10809174 + 0 NA promoter-TSS (NR_120540) promoter-TSS (NR_120540) -87 NM_001042559 1982 Hs.183684 NM_001418 ENSG00000110321 EIF4G2 AAG1|DAP5|NAT1|P97 eukaryotic translation initiation factor 4 gamma 2 protein-coding 27032 chr7 132138996 132139100 + 0 NA intron (NM_020911, intron 30 of 31) intron (NM_020911, intron 30 of 31) -121813 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 491 chr1 28885096 28885200 + 0 NA Intergenic Intergenic -1943 NM_001166005 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 9382 chr14 75063639 75063666 + 0 NA intron (NM_001302617, intron 1 of 2) intron (NM_001302617, intron 1 of 2) 397 NM_001302616 97 Hs.18573 NM_001107 ENSG00000119640 ACYP1 ACYPE acylphosphatase 1 protein-coding 9302 chr14 69767702 69767807 + 0 NA promoter-TSS (NR_029378) promoter-TSS (NR_029378) -41 NR_029378 100289511 Hs.729250 NR_029378 LOC100289511 - uncharacterized LOC100289511 ncRNA 14645 chr19 48445847 48445929 + 0 NA TTS (NM_000836) TTS (NM_000836) 115 NM_031485 83743 Hs.400625 NM_031485 ENSG00000105447 GRWD1 CDW4|GRWD|RRB1|WDR28 glutamate rich WD repeat containing 1 protein-coding 30852 chrX 78357796 78357927 + 0 NA Intergenic L1MA2|LINE|L1 -30170 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 22046 chr4 176792805 176792974 + 0 NA promoter-TSS (NM_005429) promoter-TSS (NM_005429) -144 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|VRP vascular endothelial growth factor C protein-coding 26445 chr7 76166558 76166699 + 0 NA Intergenic CpG -35265 NM_001110199 222183 Hs.511025 NM_001039212 ENSG00000177679 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 23052 chr5 115366361 115366515 + 0 NA Intergenic Intergenic -69677 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 19774 chr3 101677163 101677288 + 0 NA promoter-TSS (NM_014415) promoter-TSS (NM_014415) -81 NM_014415 27107 Hs.655286 NM_014415 ENSG00000066422 ZBTB11 ZNF-U69274|ZNF913 zinc finger and BTB domain containing 11 protein-coding 4098 chr10 93702559 93702680 + 0 NA promoter-TSS (NM_145246) promoter-TSS (NM_145246) -47 NM_001347712 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 840 chr1 47555479 47555583 + 0 NA Intergenic Intergenic -118214 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 13933 chr19 3627026 3627168 + 0 NA promoter-TSS (NM_001080543) promoter-TSS (NM_001080543) -282 NM_021231 58509 Hs.128425 NM_021231 ENSG00000105298 CACTIN C19orf29|NY-REN-24|fSAPc cactin, spliceosome C complex subunit protein-coding 4693 chr11 2202622 2202726 + 0 NA Intergenic Intergenic 29611 NR_039834 100616126 NR_039834 ENSG00000265258 MIR4686 - microRNA 4686 ncRNA 14092 chr19 10871309 10871323 + 0 NA promoter-TSS (NM_199141) promoter-TSS (NM_199141) -261 NM_199141 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 10653 chr15 89016830 89016883 + 0 NA Intergenic Intergenic -71294 NM_007011 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 28292 chr8 100213466 100213605 + 0 NA intron (NM_003114, intron 11 of 18) CpG-27473 55200 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 17956 chr20 36951683 36951876 + 0 NA promoter-TSS (NM_015474) promoter-TSS (NM_015474) 64 NM_015474 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 17617 chr20 11851039 11851143 + 0 NA intron (NR_110635, intron 1 of 1) intron (NR_110635, intron 1 of 1) 19624 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 4793 chr11 9364379 9364535 + 0 NA Intergenic CpG -20165 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 6962 chr12 49060765 49060869 + 0 NA Intergenic CpG -5493 NM_003482 8085 Hs.731384 NM_003482 ENSG00000167548 KMT2D AAD10|ALR|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21 lysine methyltransferase 2D protein-coding 3265 chr10 7788011 7788214 + 0 NA promoter-TSS (NM_012311) promoter-TSS (NM_012311) 8 NM_001320886 509 Hs.271135 NM_005174 ENSG00000165629 ATP5C1 ATP5C|ATP5CL1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 protein-coding 30946 chrX 108001065 108001169 + 0 NA Intergenic L1PA16|LINE|L1 -18747 NM_031273 56156 Hs.333130 NM_031273 ENSG00000170925 TEX13B TGC3B|TSGA5 testis expressed 13B protein-coding 16395 chr2 139122828 139122932 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 225556 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 14165 chr19 13795156 13795339 + 0 NA promoter-TSS (NM_023072) promoter-TSS (NM_023072) -213 NM_023072 65249 Hs.466015 NM_023072 ENSG00000132003 ZSWIM4 - zinc finger SWIM-type containing 4 protein-coding 15430 chr2 43041893 43041997 + 0 NA Intergenic Intergenic -2402 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 25919 chr7 27113512 27113627 + 0 NA intron (NM_153631, intron 2 of 3) CpG 6026 NM_030661 3200 Hs.659337 NM_030661 ENSG00000105997 HOXA3 HOX1|HOX1E homeobox A3 protein-coding 6213 chr11 120511165 120511292 + 0 NA promoter-TSS (NM_014619) promoter-TSS (NM_014619) -518 NM_014619 2900 Hs.538738 NM_014619 ENSG00000149403 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate ionotropic receptor kainate type subunit 4 protein-coding 10554 chr15 81167362 81167377 + 0 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -29509 NM_001172128 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 12737 chr17 56834025 56834132 + 0 NA promoter-TSS (NM_001085430) promoter-TSS (NM_001085430) -21 NM_003647 8526 Hs.239514 NM_003647 ENSG00000153933 DGKE AHUS7|DAGK5|DAGK6|DGK|NPHS7 diacylglycerol kinase epsilon protein-coding 27053 chr7 134669949 134670053 + 0 NA intron (NM_001293085, intron 3 of 3) intron (NM_001293085, intron 3 of 3) 23222 NM_001293085 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM bisphosphoglycerate mutase protein-coding 23695 chr5 170151475 170151528 + 0 NA Intergenic Intergenic 45588 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 1795 chr1 154870320 154870466 + 0 NA promoter-TSS (NM_001204087) promoter-TSS (NM_001204087) -115 NM_002249 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 7387 chr12 89160812 89160916 + 0 NA Intergenic Intergenic -141172 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 22979 chr5 107425870 107425974 + 0 NA intron (NM_001962, intron 2 of 4) intron (NM_001962, intron 2 of 4) 244973 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 18091 chr20 45416021 45416052 + 0 NA promoter-TSS (NM_001184728) promoter-TSS (NM_001184728) -31 NM_001184729 51604 Hs.437388 NM_015937 ENSG00000124155 PIGT CGI-06|MCAHS3|NDAP|PNH2 phosphatidylinositol glycan anchor biosynthesis class T protein-coding 6869 chr12 38906678 38906846 + 0 NA Intergenic CpG -1144 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 11337 chr16 51539141 51539155 + 0 NA Intergenic Intergenic -223371 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 9950 chr15 41116532 41116625 + 0 NA promoter-TSS (NR_104038) promoter-TSS (NR_104038) -332 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 23246 chr5 134411829 134411971 + 0 NA promoter-TSS (NM_080656) promoter-TSS (NM_080656) 7 NM_080656 91368 Hs.156506 NM_080656 ENSG00000237190 CDKN2AIPNL - CDKN2A interacting protein N-terminal like protein-coding 15495 chr2 46941170 46941239 + 0 NA promoter-TSS (NM_001288951) promoter-TSS (NM_001288951) 30 NM_001288951 57217 Hs.370603 NM_020458 ENSG00000068724 TTC7A GIDID|MINAT|TTC7 tetratricopeptide repeat domain 7A protein-coding 12868 chr17 65370811 65370963 + 0 NA Intergenic Intergenic -86654 NR_131984 105827617 NR_131984 ENSG00000263520 CRAT40 - cervical cancer-associated transcript 40 ncRNA 17668 chr20 15740551 15740655 + 0 NA intron (NM_001033087, intron 4 of 13) L2a|LINE|L2 182711 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 19394 chr3 40971806 40971935 + 0 NA Intergenic Intergenic -227554 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 3273 chr10 9262944 9263048 + 0 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -12617 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 12269 chr17 28719560 28719712 + 0 NA promoter-TSS (NM_000984) promoter-TSS (NM_000984) -346 NM_000984 6147 Hs.419463 NM_000984 ENSG00000198242 RPL23A L23A|MDA20 ribosomal protein L23a protein-coding 29728 chr9 104830073 104830177 + 0 NA intron (NM_005502, intron 14 of 49) intron (NM_005502, intron 14 of 49) 66384 NR_130760 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 24869 chr6 84547596 84547651 + 0 NA Intergenic Intergenic -72694 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 30402 chrM 3396 3516 + 0 NA TTS (NR_137295) TTS (NR_137295) 1785 NR_137295 11070 chr16 17556861 17556955 + 0 NA Intergenic Intergenic -86027 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 21041 chr3 196081996 196082100 + 0 NA promoter-TSS (NM_003234) promoter-TSS (NM_003234) 42 NM_003234 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 20273 chr3 140529288 140529342 + 0 NA intron (NM_022131, intron 8 of 16) intron (NM_022131, intron 8 of 16) -20526 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 26635 chr7 96135359 96135549 + 0 NA intron (NR_027662, intron 13 of 16) intron (NR_027662, intron 13 of 16) 84302 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 1861 chr1 156741271 156741375 + 0 NA promoter-TSS (NM_145729) promoter-TSS (NM_145729) -192 NM_024540 79590 Hs.418233 NM_024540 ENSG00000143314 MRPL24 L24mt|MRP-L18|MRP-L24 mitochondrial ribosomal protein L24 protein-coding 2825 chr1 225445082 225445192 + 0 NA Intergenic Intergenic -16282 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 3415 chr10 22823139 22823243 + 0 NA Intergenic MIRb|SINE|MIR -104833 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 7195 chr12 62192718 62192822 + 0 NA promoter-TSS (NM_178539) promoter-TSS (NM_178539) 69 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 FAM19A2 TAFA-2|TAFA2 family with sequence similarity 19 member A2, C-C motif chemokine like protein-coding 23734 chr5 172807290 172807394 + 0 NA Intergenic Intergenic -26878 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 21799 chr4 129093488 129093663 + 0 NA promoter-TSS (NM_144643) promoter-TSS (NM_144643) 32 NM_001300898 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 19813 chr3 106428737 106428841 + 0 NA Intergenic Intergenic -559367 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 23958 chr6 7107689 7107793 + 0 NA promoter-TSS (NM_001003699) promoter-TSS (NM_001003699) -112 NM_001003700 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 25298 chr6 148235525 148235717 + 0 NA Intergenic Intergenic -36655 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 24606 chr6 43926791 43926895 + 0 NA intron (NR_024478, intron 1 of 1) intron (NR_024478, intron 1 of 1) 35815 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 HI-LNC77 long intergenic non-protein coding RNA 1512 ncRNA 20933 chr3 190116587 190116691 + 0 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) -4325 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 19586 chr3 57752474 57752578 + 0 NA Intergenic Intergenic -4730 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 4051 chr10 89466709 89466813 + 0 NA intron (NR_120614, intron 2 of 2) intron (NR_120614, intron 2 of 2) 10770 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 27688 chr8 37762459 37762629 + 0 NA promoter-TSS (NM_007198) promoter-TSS (NM_007198) -39 NM_007198 11212 Hs.304792 NM_007198 ENSG00000147471 PROSC - proline synthetase cotranscribed homolog (bacterial) protein-coding 15414 chr2 41722859 41722963 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -154644 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 24787 chr6 73130132 73130204 + 0 NA intron (NM_001160133, intron 10 of 14) intron (NM_001160133, intron 10 of 14) 13346 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 4195 chr10 99621375 99621518 + 0 NA promoter-TSS (NM_031212) promoter-TSS (NM_031212) -982 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 1654 chr1 147545138 147545242 + 0 NA intron (NM_004326, intron 1 of 9) intron (NM_004326, intron 1 of 9) 3689 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS B-cell CLL/lymphoma 9 protein-coding 4738 chr11 6234749 6234851 + 0 NA promoter-TSS (NM_001098794) promoter-TSS (NM_001098794) -89 NM_032127 84067 Hs.501793 NM_032127 ENSG00000051009 FAM160A2 C11orf56|FHIP family with sequence similarity 160 member A2 protein-coding 5432 chr11 64305159 64305294 + 0 NA promoter-TSS (NM_001282451) promoter-TSS (NM_001282451) -302 NM_001282451 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding 13359 chr18 27062943 27063047 + 0 NA intron (NM_031422, intron 2 of 5) intron (NM_031422, intron 2 of 5) 122343 NM_001256316 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 6740 chr12 24755143 24755247 + 0 NA Intergenic Intergenic 147193 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 10781 chr15 97960378 97960532 + 0 NA promoter-TSS (NM_183376) promoter-TSS (NM_183376) -248 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 5719 chr11 79335810 79335845 + 0 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 66282 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 23878 chr6 2245565 2245711 + 0 NA promoter-TSS (NM_001500) promoter-TSS (NM_001500) -4 NM_001500 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 30089 chr9 124665662 124665766 + 0 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) 7278 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 30051 chr9 121972611 121972708 + 0 NA intron (NM_001139442, intron 6 of 8) intron (NM_001139442, intron 6 of 8) 120947 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 10077 chr15 50355461 50355565 + 0 NA promoter-TSS (NM_005254) promoter-TSS (NM_005254) -84 NM_001320910 2553 Hs.654350 NM_002041 ENSG00000104064 GABPB1 BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4TF1B|GABPB|GABPB-1|GABPB2|NRF2B1|NRF2B2 GA binding protein transcription factor beta subunit 1 protein-coding 3268 chr10 8389709 8389813 + 0 NA Intergenic Intergenic -121456 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 6725 chr12 22046175 22046337 + 0 NA promoter-TSS (NM_018686) promoter-TSS (NM_018686) 82 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 29631 chr9 96674945 96675108 + 0 NA Intergenic Intergenic -19709 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 AAED1 C9orf21 AhpC/TSA antioxidant enzyme domain containing 1 protein-coding 23669 chr5 167816090 167816194 + 0 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 61206 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 17545 chr20 6591018 6591038 + 0 NA Intergenic Intergenic 164296 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility candidate 20 (non-protein coding) ncRNA 26107 chr7 40922404 40922532 + 0 NA Intergenic Intergenic 57471 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 13844 chr19 909255 909409 + 0 NA intron (NM_138774, intron 1 of 7) intron (NM_138774, intron 1 of 7) 3893 NM_138774 91300 Hs.557655 NM_138774 ENSG00000198858 R3HDM4 C19orf22 R3H domain containing 4 protein-coding 25283 chr6 146028312 146028416 + 0 NA promoter-TSS (NM_001278064) promoter-TSS (NM_001278064) 582 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCAR13 glutamate metabotropic receptor 1 protein-coding 14873 chr19 58401274 58401403 + 0 NA Intergenic CpG 5248 NM_001195135 646862 Hs.728121 NM_001195135 ENSG00000269855 RNF225 - ring finger protein 225 protein-coding 15082 chr2 16609156 16609227 + 0 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 56675 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 16922 chr2 201233382 201233486 + 0 NA promoter-TSS (NM_001228) promoter-TSS (NM_001228) -9 NM_033355 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 14581 chr19 45863215 45863341 + 0 NA promoter-TSS (NM_004819) promoter-TSS (NM_004819) 12 NM_004819 8189 Hs.515475 NM_004819 ENSG00000125755 SYMPK SPK|SYM symplekin protein-coding 2145 chr1 179882558 179882700 + 0 NA exon (NM_015602, exon 1 of 10) exon (NM_015602, exon 1 of 10) 587 NM_001267578 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 11803 chr16 86664624 86664728 + 0 NA Intergenic Intergenic 57283 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LOC101928614 - uncharacterized LOC101928614 ncRNA 8355 chr13 74134361 74134505 + 0 NA promoter-TSS (NM_007249) promoter-TSS (NM_007249) -504 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 26556 chr7 88243513 88243593 + 0 NA Intergenic Intergenic -16560 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 17872 chr20 32778525 32778629 + 0 NA intron (NM_001207056, intron 1 of 17) intron (NM_001207056, intron 1 of 17) -1275 NM_175850 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 9685 chr14 101731323 101731547 + 0 NA non-coding (NR_026774, exon 2 of 4) non-coding (NR_026774, exon 2 of 4) 998 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 8717 chr14 23034853 23034962 + 0 NA 5' UTR (NM_001144932, exon 1 of 4) 5' UTR (NM_001144932, exon 1 of 4) 238 NM_001144932 5693 Hs.422990 NM_002797 ENSG00000100804 PSMB5 LMPX|MB1|X proteasome subunit beta 5 protein-coding 22285 chr5 17128027 17128131 + 0 NA Intergenic Intergenic -88744 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 8984 chr14 51087061 51087165 + 0 NA intron (NM_052978, intron 1 of 6) intron (NM_052978, intron 1 of 6) 8591 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 7795 chr12 122111129 122111272 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) 32472 NM_014938 22877 Hs.437153 NM_014938 ENSG00000175727 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 7989 chr13 25301480 25301628 + 0 NA promoter-TSS (NM_001008564) promoter-TSS (NM_001008564) 26 NM_001008564 9818 Hs.507537 NM_014089 ENSG00000139496 NUP58 NUP45|NUPL1|PRO2463 nucleoporin 58 protein-coding 17681 chr20 17557737 17557841 + 0 NA intron (NM_001278606, intron 1 of 8) intron (NM_001278606, intron 1 of 8) 1171 NM_001278607 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 12905 chr17 68909196 68909216 + 0 NA intron (NM_001288986, intron 16 of 38) intron (NM_001288986, intron 16 of 38) 46186 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 8878 chr14 36057860 36057964 + 0 NA Intergenic Intergenic -12515 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 7367 chr12 87317418 87317522 + 0 NA Intergenic Intergenic -13269 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 15958 chr2 95260229 95260283 + 0 NA Intergenic Intergenic -14192 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 26359 chr7 66921049 66921178 + 0 NA promoter-TSS (NM_017994) promoter-TSS (NM_017994) -103 NM_017994 55069 Hs.488478 NM_017994 ENSG00000106609 TMEM248 C7orf42 transmembrane protein 248 protein-coding 3913 chr10 74176625 74176702 + 0 NA 5' UTR (NM_001202449, exon 1 of 10) 5' UTR (NM_001202449, exon 1 of 10) 174 NM_001202449 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 30466 chrX 7927411 7927564 + 0 NA promoter-TSS (NM_004650) promoter-TSS (NM_004650) -53 NM_004650 8228 Hs.264 NM_004650 ENSG00000006757 PNPLA4 DXS1283E|GS2|iPLA2eta patatin like phospholipase domain containing 4 protein-coding 26565 chr7 90298238 90298342 + 0 NA intron (NM_001160138, intron 16 of 22) intron (NM_001160138, intron 16 of 22) -36933 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 19304 chr3 31077330 31077434 + 0 NA Intergenic L2|LINE|L2 84405 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 19694 chr3 87077038 87077142 + 0 NA Intergenic Intergenic -12190 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 18284 chr20 56221367 56221471 + 0 NA Intergenic LTR10A|LTR|ERV1 -27313 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 27708 chr8 38386353 38386364 + 0 NA promoter-TSS (NM_001286821) promoter-TSS (NM_001286821) -83 NM_001286821 137994 Hs.696457 NM_144652 ENSG00000165046 LETM2 - leucine zipper and EF-hand containing transmembrane protein 2 protein-coding 7266 chr12 73612631 73612828 + 0 NA Intergenic Intergenic 453539 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LOC101928137 - uncharacterized LOC101928137 ncRNA 27695 chr8 38030936 38031063 + 0 NA intron (NM_004095, intron 1 of 2) CpG 497 NM_004095 1978 Hs.411641 NM_004095 ENSG00000187840 EIF4EBP1 4E-BP1|4EBP1|BP-1|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 protein-coding 17214 chr2 226977982 226978103 + 0 NA intron (NM_032276, intron 6 of 6) intron (NM_032276, intron 6 of 6) 142087 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RRP4 rhomboid domain containing 1 protein-coding 4514 chr10 121553851 121553955 + 0 NA intron (NM_001144918, intron 2 of 15) intron (NM_001144918, intron 2 of 15) -22589 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 4651 chr11 236274 236378 + 0 NA promoter-TSS (NM_001017524) promoter-TSS (NM_001017524) 36 NM_001017524 23410 Hs.716456 NM_012239 ENSG00000142082 SIRT3 SIR2L3 sirtuin 3 protein-coding 6775 chr12 27022389 27022554 + 0 NA promoter-TSS (NR_073463) promoter-TSS (NR_073463) -51 NM_001271811 9412 Hs.286145 NM_004264 ENSG00000152944 MED21 SRB7|SURB7|hSrb7 mediator complex subunit 21 protein-coding 29338 chr9 79362206 79362310 + 0 NA Intergenic Intergenic -209515 NM_001282749 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 16542 chr2 160221842 160221984 + 0 NA Intergenic Intergenic -21600 NM_001282388 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 25271 chr6 144897616 144897810 + 0 NA Intergenic Intergenic 492058 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 22994 chr5 108747758 108747862 + 0 NA promoter-TSS (NM_005246) promoter-TSS (NM_005246) -12 NM_005246 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 7813 chr12 122896076 122896180 + 0 NA promoter-TSS (NM_024667) promoter-TSS (NM_024667) 37 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B, ESCRT-I subunit protein-coding 7582 chr12 106288524 106288677 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -14191 NM_001286262 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 30287 chr9 131762505 131762609 + 0 NA Intergenic CpG -22613 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 8274 chr13 50082675 50082779 + 0 NA intron (NR_002605, intron 1 of 1) intron (NR_002605, intron 1 of 1) 558 NR_109974 10301 Hs.591229 NM_005887 ENSG00000176124 DLEU1 BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 deleted in lymphocytic leukemia 1 ncRNA 19667 chr3 72722993 72723102 + 0 NA Intergenic Intergenic -58798 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 21514 chr4 82891193 82891339 + 0 NA promoter-TSS (NM_001318119) promoter-TSS (NM_001318119) 14 NM_001318119 22872 Hs.370024 NM_014933 ENSG00000138674 SEC31A ABP125|ABP130|HSPC275|HSPC334|SEC31L1 SEC31 homolog A, COPII coat complex component protein-coding 2677 chr1 214901778 214901882 + 0 NA Intergenic Intergenic -103712 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 5439 chr11 64358033 64358137 + 0 NA TTS (NM_032251) TTS (NM_032251) -1068 NM_001318361 8986 Hs.105584 NM_003942 ENSG00000162302 RPS6KA4 MSK2|RSK-B|S6K-alpha-4 ribosomal protein S6 kinase A4 protein-coding 17213 chr2 226835933 226836051 + 0 NA promoter-TSS (NM_001167608) promoter-TSS (NM_001167608) 37 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RRP4 rhomboid domain containing 1 protein-coding 14374 chr19 35644451 35644585 + 0 NA intron (NM_014209, intron 6 of 6) CpG-14290 2781 NM_001300974 2116 Hs.194061 NM_014209 ENSG00000105672 ETV2 ER71|ETSRP71 ETS variant 2 protein-coding 23756 chr5 174571978 174572041 + 0 NA Intergenic Intergenic -152563 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 19789 chr3 102378319 102378460 + 0 NA Intergenic Intergenic -56626 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 367 chr1 24018949 24019110 + 0 NA Intergenic Intergenic -38566 NM_006625 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 6790 chr12 27822150 27822207 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 41924 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 14961 chr2 9206445 9206552 + 0 NA promoter-TSS (NM_001135191) promoter-TSS (NM_001135191) -267 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 1821 chr1 155648644 155648780 + 0 NA Intergenic Intergenic 30543 NR_132762 106633810 NR_132762 SCARNA26A - small Cajal body-specific RNA 26A ncRNA 5741 chr11 82695825 82695946 + 0 NA Intergenic Intergenic 37979 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 22489 chr5 50394059 50394163 + 0 NA Intergenic Intergenic 47289 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 6037 chr11 109728148 109728291 + 0 NA Intergenic Intergenic 306099 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 17395 chr2 240851288 240851436 + 0 NA Intergenic Intergenic -17383 NM_000030 189 Hs.144567 NM_000030 ENSG00000172482 AGXT AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6 alanine-glyoxylate aminotransferase protein-coding 7342 chr12 84508473 84508557 + 0 NA Intergenic MER50-int|LTR|ERV1 404314 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 11013 chr16 11201812 11201822 + 0 NA Intergenic Intergenic 54365 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 19057 chr22 50475092 50475240 + 0 NA promoter-TSS (NM_002972) promoter-TSS (NM_002972) -95 NM_002972 6305 Hs.589924 NM_002972 ENSG00000100241 SBF1 CMT4B3|DENND7A|MTMR5 SET binding factor 1 protein-coding 23455 chr5 147835425 147835582 + 0 NA intron (NM_003122, intron 1 of 4) intron (NM_003122, intron 1 of 4) 3728 NM_003122 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 24665 chr6 48641656 48641760 + 0 NA Intergenic Intergenic -573019 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 27906 chr8 59617368 59617500 + 0 NA Intergenic Intergenic -498226 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 11352 chr16 53084350 53084379 + 0 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) 29331 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 18080 chr20 45061400 45061551 + 0 NA intron (NM_006282, intron 10 of 10) Tigger7|DNA|TcMar-Tigger 39637 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 14769 chr19 53980368 53980502 + 0 NA intron (NM_031895, intron 3 of 3) intron (NM_031895, intron 3 of 3) -1872 NR_030632 100126325 NR_030632 ENSG00000142408 MIR935 MIRN935|hsa-mir-935|mir-935 microRNA 935 ncRNA 23059 chr5 115544702 115544852 + 0 NA 5' UTR (NM_020177, exon 1 of 3) 5' UTR (NM_020177, exon 1 of 3) 117 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 27483 chr8 19537252 19537356 + 0 NA intron (NR_024040, intron 2 of 9) MER72B|LTR|ERV1 65241 NM_001130518 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 31086 chrX 134948825 134948937 + 0 NA promoter-TSS (NR_134925) promoter-TSS (NR_134925) -668 NR_134925 340581 Hs.434754 NR_134925 ENSG00000236091 LOC340581 - uncharacterized LOC340581 ncRNA 12432 chr17 39451279 39451431 + 0 NA promoter-TSS (NM_004774) promoter-TSS (NM_004774) -81 NM_004774 5469 Hs.643754 NM_004774 ENSG00000125686 MED1 CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2 mediator complex subunit 1 protein-coding 20880 chr3 187187002 187187016 + 0 NA Intergenic Intergenic -10477 NM_153708 132112 Hs.518480 NM_153708 ENSG00000175077 RTP1 Z3CXXC1 receptor transporter protein 1 protein-coding 1012 chr1 63877872 63877976 + 0 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 103905 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 29661 chr9 98081633 98081750 + 0 NA intron (NM_018946, intron 5 of 5) intron (NM_018946, intron 5 of 5) 25014 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 22959 chr5 103057352 103057456 + 0 NA Intergenic MER41A|LTR|ERV1 62734 NR_134299 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 19424 chr3 43691429 43691449 + 0 NA intron (NM_016006, intron 1 of 6) CpG 155 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 26087 chr7 38863738 38863877 + 0 NA intron (NM_014396, intron 3 of 28) intron (NM_014396, intron 3 of 28) 45393 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41, HOPS complex subunit protein-coding 24506 chr6 37862998 37863102 + 0 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 43519 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 24482 chr6 37048829 37048961 + 0 NA Intergenic Intergenic 43248 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 6701 chr12 17918119 17918223 + 0 NA Intergenic L1ME1|LINE|L1 172022 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 4071 chr10 91908865 91908964 + 0 NA exon (NM_152429, exon 2 of 2) exon (NM_152429, exon 2 of 2) 587 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 17697 chr20 18252875 18252882 + 0 NA Intergenic Intergenic -35405 NM_001282996 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 25910 chr7 26603747 26603851 + 0 NA Intergenic Intergenic -34072 NM_001145531 285941 Hs.413394 NM_001145531 C7orf71 - chromosome 7 open reading frame 71 protein-coding 3855 chr10 71729433 71729587 + 0 NA intron (NM_022124, intron 29 of 67) LTR16A2|LTR|ERVL 8314 NM_001168390 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 342 chr1 23368181 23368285 + 0 NA promoter-TSS (NR_033690) promoter-TSS (NR_033690) 153 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 29982 chr9 116391471 116391575 + 0 NA intron (NM_002581, intron 21 of 21) intron (NM_002581, intron 21 of 21) 9083 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 26945 chr7 124073101 124073143 + 0 NA Intergenic Intergenic -39653 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 7588 chr12 106357700 106357804 + 0 NA promoter-TSS (NM_018082) promoter-TSS (NM_018082) 94 NM_018082 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 16895 chr2 199911086 199911190 + 0 NA promoter-TSS (NM_153689) promoter-TSS (NM_153689) -118 NM_153689 205327 Hs.154494 NM_153689 ENSG00000178074 C2orf69 - chromosome 2 open reading frame 69 protein-coding 11277 chr16 46689256 46689396 + 0 NA promoter-TSS (NR_037620) promoter-TSS (NR_037620) -94 NM_018206 55737 Hs.454528 NM_018206 ENSG00000069329 VPS35 MEM3|PARK17 VPS35, retromer complex component protein-coding 16031 chr2 101252745 101252899 + 0 NA promoter-TSS (NM_017546) promoter-TSS (NM_017546) -61 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 2883 chr1 228045937 228046102 + 0 NA intron (NM_033131, intron 2 of 3) intron (NM_033131, intron 2 of 3) -36641 NM_001658 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 19484 chr3 48989754 48989861 + 0 NA promoter-TSS (NM_177938) promoter-TSS (NM_177938) -101 NM_177938 54681 Hs.654944 NM_017732 ENSG00000178467 P4HTM EGLN4|HIFPH4|P4H-TM|PH-4|PH4|PHD4 prolyl 4-hydroxylase, transmembrane protein-coding 2540 chr1 208207887 208207969 + 0 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 36392 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 22062 chr4 180913974 180914078 + 0 NA Intergenic Intergenic 245123 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 21320 chr4 42657079 42657276 + 0 NA promoter-TSS (NM_001105529) promoter-TSS (NM_001105529) -72 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 3793 chr10 67492622 67492726 + 0 NA intron (NM_001127384, intron 5 of 17) L2a|LINE|L2 -89264 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 2284 chr1 194045502 194045606 + 0 NA Intergenic Intergenic 740809 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 24118 chr6 17389589 17389693 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger -3864 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - CAP, adenylate cyclase-associated protein, 2 (yeast) protein-coding 8677 chr14 21014739 21014925 + 0 NA Intergenic Intergenic 8554 NR_106774 102465428 NR_106774 ENSG00000165795 MIR6717 hsa-mir-6717 microRNA 6717 ncRNA 21317 chr4 42641316 42641420 + 0 NA intron (NM_006095, intron 1 of 36) L3b|LINE|CR1 15737 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 31183 chrX 154428443 154428547 + 0 NA promoter-TSS (NM_001183) promoter-TSS (NM_001183) -16 NR_103768 158960 Hs.553131 NR_103768 ENSG00000197180 CH17-340M24.3 - uncharacterized protein BC009467 ncRNA 25473 chr6 166556916 166557086 + 0 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -12311 NM_001318938 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 19473 chr3 48599095 48599199 + 0 NA exon (NM_003365, exon 13 of 13) exon (NM_003365, exon 13 of 13) -3987 NM_000094 1294 Hs.476218 NM_000094 ENSG00000114270 COL7A1 EBD1|EBDCT|EBR1|NDNC8 collagen type VII alpha 1 chain protein-coding 45 chr1 2534932 2535036 + 0 NA Intergenic Intergenic -4739 NM_001010926 388585 Hs.57971 NM_001010926 ENSG00000197921 HES5 bHLHb38 hes family bHLH transcription factor 5 protein-coding 25369 chr6 154368384 154368488 + 0 NA Intergenic Intergenic -11670 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 12039 chr17 7394839 7394846 + 0 NA promoter-TSS (NM_001201576) promoter-TSS (NM_001201576) 1 NM_020360 57048 Hs.534591 NM_020360 ENSG00000187838 PLSCR3 - phospholipid scramblase 3 protein-coding 4172 chr10 97689776 97689936 + 0 NA Intergenic Intergenic -2598 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 4426 chr10 116849708 116849797 + 0 NA promoter-TSS (NM_001330164) promoter-TSS (NM_001330164) 25 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 24338 chr6 30742982 30742996 + 0 NA promoter-TSS (NM_005803).3 promoter-TSS (NM_005803).3 -138 NM_001318875 10211 Hs.179986 NM_005803 ENSG00000137312 FLOT1 - flotillin 1 protein-coding 13908 chr19 2785300 2785449 + 0 NA promoter-TSS (NM_003249) promoter-TSS (NM_003249) -86 NM_003249 7064 Hs.78769 NM_003249 ENSG00000172009 THOP1 EP24.15|MEPD_HUMAN|MP78|TOP thimet oligopeptidase 1 protein-coding 10442 chr15 74531547 74531651 + 0 NA Intergenic Intergenic -9578 NM_001307939 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 19784 chr3 102124396 102124547 + 0 NA Intergenic Intergenic -39234 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 11606 chr16 72665035 72665144 + 0 NA promoter-TSS (NR_126330) promoter-TSS (NR_126330) -80 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 1963 chr1 163321778 163321943 + 0 NA promoter-TSS (NM_031423) promoter-TSS (NM_031423) -69 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G-protein signaling 5 protein-coding 27328 chr8 6516792 6516929 + 0 NA intron (NM_001147, intron 5 of 8) intron (NM_001147, intron 5 of 8) 46403 NM_001118887 285 Hs.583870 NM_001147 ENSG00000091879 ANGPT2 AGPT2|ANG2 angiopoietin 2 protein-coding 15672 chr2 64838858 64838962 + 0 NA Intergenic Intergenic 24721 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 10905 chr16 2882683 2882804 + 0 NA promoter-TSS (NM_001142499) promoter-TSS (NM_001142499) -452 NM_001142499 114984 Hs.534525 NM_138439 ENSG00000162076 FLYWCH2 - FLYWCH family member 2 protein-coding 25177 chr6 134363449 134363553 + 0 NA Intergenic Intergenic -45443 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 18653 chr22 20567549 20567682 + 0 NA intron (NM_001003891, intron 7 of 17) intron (NM_001003891, intron 7 of 17) 59567 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 1733 chr1 152024361 152024432 + 0 NA Intergenic Intergenic 6118 NR_103561 441908 Hs.656557 NR_103561 NBPF18P - neuroblastoma breakpoint family member 18, pseudogene pseudo 6943 chr12 47905098 47905250 + 0 NA promoter-TSS (NM_000376) promoter-TSS (NM_000376) -143 NM_000376 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D (1,25- dihydroxyvitamin D3) receptor protein-coding 29541 chr9 92100641 92100800 + 0 NA intron (NM_001281303, intron 3 of 14) intron (NM_001281303, intron 3 of 14) 14754 NM_178324 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 29517 chr9 90942722 90942861 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 115371 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 5028 chr11 26231272 26231376 + 0 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 42201 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 24039 chr6 11344537 11344663 + 0 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 37748 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 2113 chr1 177220069 177220101 + 0 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 48697 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 2153 chr1 180502902 180502907 + 0 NA promoter-TSS (NM_032360) promoter-TSS (NM_032360) -17 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 29297 chr9 76818451 76818578 + 0 NA intron (NR_131751, intron 5 of 15) intron (NR_131751, intron 5 of 15) 54078 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3 prostate cancer associated 3 (non-protein coding) ncRNA 14036 chr19 8424046 8424159 + 0 NA intron (NM_016496, intron 3 of 5) intron (NM_016496, intron 3 of 5) 10799 NM_016496 51257 Hs.631861 NM_016496 ENSG00000099785 MARCH2 HSPC240|MARCH-II|RNF172 membrane associated ring-CH-type finger 2 protein-coding 23901 chr6 3157584 3157642 + 0 NA promoter-TSS (NM_001310315) promoter-TSS (NM_001310315) -64 NM_001310315 7280 Hs.654543 NM_001069 ENSG00000137267 TUBB2A CDCBM5|TUBB|TUBB2 tubulin beta 2A class IIa protein-coding 16315 chr2 130337222 130337326 + 0 NA TTS (NM_001321118) TTS (NM_001321118) 4834 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 22901 chr5 94693533 94693535 + 0 NA intron (NM_032290, intron 20 of 20) intron (NM_032290, intron 20 of 20) 74848 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 2568 chr1 209588008 209588092 + 0 NA intron (NM_020439, intron 1 of 12) intron (NM_020439, intron 1 of 12) 4350 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 24703 chr6 53112593 53112720 + 0 NA Intergenic Intergenic 36170 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 13269 chr18 11857555 11857688 + 0 NA 5' UTR (NM_001261444, exon 1 of 8) 5' UTR (NM_001261444, exon 1 of 8) 183 NM_001261444 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 2841 chr1 225897158 225897372 + 0 NA Intergenic Intergenic -8119 NM_020997 10637 Hs.656214 NM_020997 ENSG00000243709 LEFTY1 LEFTB|LEFTYB left-right determination factor 1 protein-coding 7773 chr12 121399927 121400066 + 0 NA promoter-TSS (NM_001256858) promoter-TSS (NM_001256858) -87 NM_025126 80196 Hs.292804 NM_025126 ENSG00000170633 RNF34 CARP-1|CARP1|RFI|RIF|RIFF|hRFI ring finger protein 34 protein-coding 24895 chr6 87702356 87702421 + 0 NA promoter-TSS (NM_018064) promoter-TSS (NM_018064) -121 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 22715 chr5 73540300 73540422 + 0 NA Intergenic Intergenic 25325 NM_023039 57763 Hs.239154 NM_023039 ENSG00000164331 ANKRA2 ANKRA ankyrin repeat family A member 2 protein-coding 4670 chr11 695560 695711 + 0 NA promoter-TSS (NM_001042463) promoter-TSS (NM_001042463) 44 NM_001042463 283232 Hs.448664 NM_174940 ENSG00000177042 TMEM80 - transmembrane protein 80 protein-coding 26283 chr7 51340335 51340439 + 0 NA Intergenic Intergenic -23526 NM_001287436 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 30750 chrX 54440301 54440434 + 0 NA promoter-TSS (NM_058163) promoter-TSS (NM_058163) -8 NM_001346790 90121 Hs.522662 NM_058163 ENSG00000158526 TSR2 DBA14|DT1P1A10|WGG1 TSR2, ribosome maturation factor protein-coding 19514 chr3 50299558 50299740 + 0 NA promoter-TSS (NM_003549) promoter-TSS (NM_003549) -181 NM_001200031 8372 Hs.129910 NM_003549 ENSG00000186792 HYAL3 HYAL-3|LUCA-3|LUCA3 hyaluronoglucosaminidase 3 protein-coding 5931 chr11 96464820 96464924 + 0 NA intron (NR_047481, intron 1 of 4) intron (NR_047481, intron 1 of 4) 42005 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 11479 chr16 66696042 66696185 + 0 NA intron (NM_181521, intron 1 of 3) CpG 594 NM_181521 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 8862 chr14 35332238 35332412 + 0 NA Intergenic Intergenic 40008 NM_002791 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 25659 chr7 7566143 7566247 + 0 NA promoter-TSS (NM_019005) promoter-TSS (NM_019005) -130 NR_110084 101927391 Hs.223837 NR_110084 LOC101927391 - uncharacterized LOC101927391 ncRNA 20338 chr3 146163702 146163806 + 0 NA Intergenic Intergenic -2259 NM_182943 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 24810 chr6 78599058 78599209 + 0 NA Intergenic LTR16|LTR|ERVL -268411 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 17995 chr20 38962195 38962393 + 0 NA promoter-TSS (NR_033905) promoter-TSS (NR_033905) -44 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 12805 chr17 61427004 61427068 + 0 NA Intergenic MIR|SINE|MIR 15285 NM_203425 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 protein-coding 29296 chr9 76688160 76688264 + 0 NA intron (NM_001308049, intron 1 of 11) intron (NM_001308049, intron 1 of 11) 4203 NM_001330680 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 protein-coding 4911 chr11 15967228 15967355 + 0 NA 3' UTR (NM_017508, exon 15 of 15) 3' UTR (NM_017508, exon 15 of 15) 2330 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 15479 chr2 45964275 45964374 + 0 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 312420 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 19560 chr3 53238346 53238467 + 0 NA intron (NM_001258028, intron 4 of 14) intron (NM_001258028, intron 4 of 14) 17708 NM_001135055 7086 Hs.89643 NM_001064 ENSG00000163931 TKT HEL-S-48|HEL107|SDDHD|TK|TKT1 transketolase protein-coding 27956 chr8 65841987 65842105 + 0 NA promoter-TSS (NM_001242318) promoter-TSS (NM_001242318) -312 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 13224 chr18 3412639 3412743 + 0 NA promoter-TSS (NM_001278686) promoter-TSS (NM_001278686) -165 NM_001278686 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 25861 chr7 23547085 23547235 + 0 NA Intergenic Intergenic -15119 NM_013293 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 28048 chr8 75314839 75314918 + 0 NA Intergenic L2a|LINE|L2 -35989 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981 cancer susceptibility candidate 9 (non-protein coding) ncRNA 23440 chr5 146447001 146447050 + 0 NA promoter-TSS (NM_006706) promoter-TSS (NM_006706) -285 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 11842 chr16 89320365 89320523 + 0 NA promoter-TSS (NM_001242885) promoter-TSS (NM_001242885) -689 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 19248 chr3 23017967 23018009 + 0 NA Intergenic Intergenic 184590 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 5114 chr11 33258288 33258347 + 0 NA promoter-TSS (NM_001278162) promoter-TSS (NM_001278162) -14 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 8030 chr13 28181557 28181699 + 0 NA intron (NM_175854, intron 4 of 18) intron (NM_175854, intron 4 of 18) -42454 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 4818 chr11 10735815 10735978 + 0 NA Intergenic Intergenic -15091 NM_014633 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 26286 chr7 51606724 51606827 + 0 NA Intergenic MIR|SINE|MIR -289914 NM_001287436 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 19537 chr3 52046669 52046720 + 0 NA Intergenic Intergenic 9751 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 29374 chr9 82935053 82935201 + 0 NA Intergenic Intergenic 128001 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 10881 chr16 2163268 2163345 + 0 NA intron (NM_032271, intron 1 of 20) intron (NM_032271, intron 1 of 20) 7508 NM_032271 84231 Hs.713632 NM_032271 ENSG00000131653 TRAF7 RFWD1|RNF119 TNF receptor associated factor 7 protein-coding 3098 chr1 243748801 243748905 + 0 NA intron (NM_001206729, intron 2 of 13) intron (NM_001206729, intron 2 of 13) 94429 NM_005465 10000 Hs.498292 NM_005465 ENSG00000117020 AKT3 MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 AKT serine/threonine kinase 3 protein-coding 13924 chr19 3177252 3177414 + 0 NA Intergenic Intergenic -1405 NM_003775 8698 Hs.662006 NM_003775 ENSG00000125910 S1PR4 EDG6|LPC1|S1P4|SLP4 sphingosine-1-phosphate receptor 4 protein-coding 3905 chr10 73906762 73906897 + 0 NA Intergenic Intergenic -4272 NM_002658 5328 Hs.77274 NM_002658 ENSG00000122861 PLAU ATF|BDPLT5|QPD|UPA|URK|u-PA plasminogen activator, urokinase protein-coding 27214 chr7 149838287 149838418 + 0 NA promoter-TSS (NM_001099220) promoter-TSS (NM_001099220) -15 NM_001099220 643641 Hs.731923 NM_001099220 ENSG00000106479 ZNF862 - zinc finger protein 862 protein-coding 7178 chr12 58364879 58364983 + 0 NA Intergenic Intergenic -226771 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 23783 chr5 177086620 177086724 + 0 NA promoter-TSS (NM_001291980) promoter-TSS (NM_001291980) -200 NM_002011 2264 Hs.165950 NM_002011 ENSG00000160867 FGFR4 CD334|JTK2|TKF fibroblast growth factor receptor 4 protein-coding 27353 chr8 8441648 8441832 + 0 NA Intergenic Intergenic -59906 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related kinase activating pseudokinase 1 protein-coding 13831 chr19 290299 290332 + 0 NA intron (NM_177526, intron 1 of 5) MIR|SINE|MIR 854 NM_177543 8612 Hs.465506 NM_003712 ENSG00000141934 PLPP2 LPP2|PAP-2c|PAP2-g|PPAP2C phospholipid phosphatase 2 protein-coding 11302 chr16 48365883 48366033 + 0 NA promoter-TSS (NM_001006610) promoter-TSS (NM_001006610) -85 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 26662 chr7 98294893 98295008 + 0 NA intron (NM_018842, intron 12 of 13) intron (NM_018842, intron 12 of 13) 13283 NM_001159491 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 1261 chr1 88647395 88647499 + 0 NA intron (NR_110682, intron 1 of 3) MLT1O|LTR|ERVL-MaLR -36697 NM_001320709 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 28092 chr8 80941255 80941317 + 0 NA Intergenic L2a|LINE|L2 -66505 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 14912 chr2 1702044 1702148 + 0 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 42451 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 11248 chr16 30922607 30922741 + 0 NA promoter-TSS (NM_001282351) promoter-TSS (NM_001282351) -381 NM_001282351 54620 Hs.152149 NM_019085 ENSG00000099364 FBXL19 CXXC11|Fbl19|JHDM1C F-box and leucine rich repeat protein 19 protein-coding 4467 chr10 119100975 119101042 + 0 NA Intergenic MER68|LTR|ERVL -3057 NM_001303112 404636 Hs.434241 NM_207009 ENSG00000119979 FAM45A - family with sequence similarity 45 member A protein-coding 26857 chr7 115249290 115249323 + 0 NA Intergenic L1ME2|LINE|L1 -17951 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 11328 chr16 50368910 50369039 + 0 NA promoter-TSS (NM_001173984) promoter-TSS (NM_001173984) -40 NM_001173984 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 7881 chr12 130097983 130098058 + 0 NA Intergenic Intergenic -55678 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LOC100190940 - uncharacterized LOC100190940 ncRNA 11548 chr16 68936846 68936990 + 0 NA intron (NM_024562, intron 14 of 17) intron (NM_024562, intron 14 of 17) 93312 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 11340 chr16 51577699 51577803 + 0 NA Intergenic Intergenic -184768 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 24965 chr6 105991902 105992006 + 0 NA Intergenic Intergenic -94366 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 24103 chr6 16131063 16131200 + 0 NA intron (NM_013262, intron 2 of 6) intron (NM_013262, intron 2 of 6) 2045 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 31191 chrX 154541205 154541372 + 0 NA promoter-TSS (NM_001099856) promoter-TSS (NM_001099856) -952 NM_001321396 8517 Hs.43505 NM_003639 ENSG00000269335 IKBKG AMCBX1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|ZC2HC9 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma protein-coding 24368 chr6 31651951 31652055 + 0 NA promoter-TSS (NR_045828).3 promoter-TSS (NR_045828).3 390 NM_001098534 7917 Hs.440900 NM_004639 ENSG00000204463 BAG6 BAG-6|BAT3|D6S52E|G3 BCL2 associated athanogene 6 protein-coding 23471 chr5 148965930 148966035 + 0 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? 96427 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 15333 chr2 33475851 33475990 + 0 NA promoter-TSS (NM_001139488) promoter-TSS (NM_001139488) -334 NM_001139488 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 28612 chr8 126488468 126488572 + 0 NA Intergenic L1PB1|LINE|L1 69946 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 25988 chr7 31493702 31493806 + 0 NA Intergenic Intergenic -20317 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 CCDC129 - coiled-coil domain containing 129 protein-coding 24452 chr6 35497402 35497473 + 0 NA promoter-TSS (NM_003214) promoter-TSS (NM_003214) -353 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding 2318 chr1 198496718 198496822 + 0 NA Intergenic AluJr|SINE|Alu 44175 NM_001320218 127124 Hs.127743 NM_133262 ENSG00000151418 ATP6V1G3 ATP6G3|Vma10 ATPase H+ transporting V1 subunit G3 protein-coding 31066 chrX 132217360 132217465 + 0 NA 5' UTR (NM_001271186, exon 4 of 6) 5' UTR (NM_001271186, exon 4 of 6) 749 NM_021183 57826 Hs.119889 NM_021183 ENSG00000123728 RAP2C - RAP2C, member of RAS oncogene family protein-coding 18217 chr20 51487973 51488077 + 0 NA intron (NM_001258295, intron 3 of 9) intron (NM_001258295, intron 3 of 9) -35048 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 27461 chr8 18614074 18614196 + 0 NA intron (NM_015310, intron 11 of 15) L2a|LINE|L2 194760 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 16416 chr2 144332371 144332475 + 0 NA intron (NM_001284235, intron 1 of 6) CpG 111 NM_001284235 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 23517 chr5 150474213 150474390 + 0 NA Intergenic Intergenic 11691 NR_105061 102546298 Hs.570892 NR_105061 ENSG00000254333 NDST1-AS1 - NDST1 antisense RNA 1 ncRNA 14805 chr19 55216659 55216763 + 0 NA Intergenic Intergenic -7205 NM_001161440 5794 Hs.179770 NM_002842 ENSG00000080031 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type H protein-coding 9140 chr14 61178771 61178875 + 0 NA Intergenic Intergenic 102989 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 22169 chr5 3659958 3660112 + 0 NA Intergenic Intergenic 63981 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 18116 chr20 46364009 46364135 + 0 NA intron (NM_001281460, intron 1 of 10) CpG 386 NM_015945 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding 23436 chr5 146182693 146182729 + 0 NA promoter-TSS (NM_001317965) promoter-TSS (NM_001317965) 76 NM_016460 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 18344 chr20 59042817 59042944 + 0 NA promoter-TSS (NR_037929) promoter-TSS (NR_037929) -34 NM_016045 51012 Hs.656865 NM_016045 ENSG00000101166 PRELID3B C20orf45|SLMO2|dJ543J19.5 PRELI domain containing 3B protein-coding 15194 chr2 25673803 25673830 + 0 NA promoter-TSS (NM_001320934) promoter-TSS (NM_001320934) -169 NM_033148 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 12599 chr17 47189476 47189580 + 0 NA promoter-TSS (NM_001293091) promoter-TSS (NM_001293091) -216 NM_001256 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 7415 chr12 91779078 91779205 + 0 NA Intergenic Intergenic 362572 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 19289 chr3 28348539 28348693 + 0 NA promoter-TSS (NM_001324169) promoter-TSS (NM_001324169) 511 NM_001134433 64343 Hs.706676 NM_022461 ENSG00000163512 AZI2 AZ2|NAP1|TILP 5-azacytidine induced 2 protein-coding 6699 chr12 16940156 16940260 + 0 NA Intergenic L1PA15-16|LINE|L1 -48539 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 28431 chr8 109975587 109975691 + 0 NA 5' UTR (NM_014379, exon 1 of 4) 5' UTR (NM_014379, exon 1 of 4) 208 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 23173 chr5 129126621 129126713 + 0 NA Intergenic Intergenic 28979 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 12489 chr17 41624739 41624911 + 0 NA promoter-TSS (NM_000422) promoter-TSS (NM_000422) -195 NM_000422 3872 Hs.2785 NM_000422 ENSG00000128422 KRT17 39.1|CK-17|K17|PC|PC2|PCHC1 keratin 17 protein-coding 30533 chrX 17547834 17547970 + 0 NA intron (NR_135631, intron 1 of 1) MLT1H2|LTR|ERVL-MaLR 11225 NR_046632 100873920 Hs.584577 NR_046632 NHS-AS1 - NHS antisense RNA 1 ncRNA 18261 chr20 53906437 53906541 + 0 NA Intergenic Intergenic -30780 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 3378 chr10 21292900 21293043 + 0 NA Intergenic Intergenic 118669 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 20990 chr3 193241225 193241329 + 0 NA promoter-TSS (NR_026877) promoter-TSS (NR_026877) 149 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 HRASLS A-C1|H-REV107|HRASLS1|HRSL1|HSD28 HRAS like suppressor protein-coding 18119 chr20 46689552 46689699 + 0 NA promoter-TSS (NM_033550) promoter-TSS (NM_033550) 12 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding 16945 chr2 203535445 203535594 + 0 NA promoter-TSS (NM_001329728) promoter-TSS (NM_001329728) -183 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 21140 chr4 5758932 5759036 + 0 NA TTS (NM_001306092) TTS (NM_001306092) 47787 NM_001306090 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 28121 chr8 85220434 85220548 + 0 NA promoter-TSS (NM_001099670) promoter-TSS (NM_001099670) -69 NR_120681 401466 Hs.443072 NM_001099670 ENSG00000176731 C8orf59 - chromosome 8 open reading frame 59 protein-coding 4034 chr10 87842403 87842520 + 0 NA intron (NR_028492, intron 3 of 3) intron (NR_028492, intron 3 of 3) 20976 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53-regulated DNA replication inhibitor protein-coding 10590 chr15 83734540 83734674 + 0 NA intron (NM_207517, intron 3 of 29) intron (NM_207517, intron 3 of 29) 80521 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 9942 chr15 40846022 40846150 + 0 NA intron (NM_003710, intron 2 of 10) intron (NM_003710, intron 2 of 10) 1641 NM_001032367 6692 Hs.233950 NM_003710 ENSG00000166145 SPINT1 HAI|HAI1|MANSC2 serine peptidase inhibitor, Kunitz type 1 protein-coding 5563 chr11 67482957 67483061 + 0 NA promoter-TSS (NM_003977) promoter-TSS (NM_003977) -20 NM_003977 9049 Hs.412433 NM_003977 ENSG00000110711 AIP ARA9|FKBP16|FKBP37|SMTPHN|XAP-2|XAP2 aryl hydrocarbon receptor interacting protein protein-coding 25832 chr7 22270034 22270174 + 0 NA intron (NM_012294, intron 6 of 25) LTR22A|LTR|ERVK 86810 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 6884 chr12 41304762 41304866 + 0 NA intron (NM_001164595, intron 3 of 9) L2|LINE|L2 116366 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 10315 chr15 66702153 66702304 + 0 NA promoter-TSS (NM_005585) promoter-TSS (NM_005585) -108 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 21577 chr4 89681337 89681441 + 0 NA Intergenic MER61C|LTR|ERV1 -155012 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 20997 chr3 193590225 193590367 + 0 NA Intergenic LTR8B|LTR|ERV1 -2848 NM_130835 4976 Hs.594504 NM_015560 ENSG00000198836 OPA1 BERHS|MGM1|MTDPS14|NPG|NTG|largeG OPA1, mitochondrial dynamin like GTPase protein-coding 29470 chr9 87792914 87793018 + 0 NA Intergenic Intergenic 20051 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 30602 chrX 32877726 32877838 + 0 NA intron (NM_004009, intron 2 of 78) LTR16A2|LTR|ERVL -236223 NR_031646 100302239 NR_031646 ENSG00000221348 MIR548F5 MIR548F-5|MIRN548F5|hsa-mir-548f-5 microRNA 548f-5 ncRNA 21924 chr4 153677190 153677210 + 0 NA intron (NR_134873, intron 2 of 2) intron (NR_134873, intron 2 of 2) -7052 NM_001318789 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 12713 chr17 54948555 54948659 + 0 NA intron (NM_001321175, intron 13 of 16) L2a|LINE|L2 -20158 NM_178509 252983 Hs.35199 NM_178509 ENSG00000166263 STXBP4 Synip syntaxin binding protein 4 protein-coding 26530 chr7 85322399 85322526 + 0 NA Intergenic Intergenic -98660 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 4079 chr10 92822165 92822269 + 0 NA Intergenic Intergenic -4614 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 7829 chr12 123383795 123383899 + 0 NA promoter-TSS (NM_001324504) promoter-TSS (NM_001324504) -269 NM_001324505 387893 Hs.443735 NM_020382 ENSG00000183955 KMT5A PR-Set7|SET07|SET8|SETD8 lysine methyltransferase 5A protein-coding 21534 chr4 84531919 84531932 + 0 NA Intergenic Intergenic -33691 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 7909 chr12 132284841 132284966 + 0 NA intron (NM_001122636, intron 2 of 10) intron (NM_001122636, intron 2 of 10) 9512 NR_024563 100130238 Hs.536338 NR_024563 LOC100130238 - uncharacterized LOC100130238 ncRNA 31041 chrX 124406776 124406880 + 0 NA intron (NM_014253, intron 24 of 30) intron (NM_014253, intron 24 of 30) 60546 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 17174 chr2 223861170 223861293 + 0 NA Intergenic Intergenic -23629 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 sigma 3 subunit protein-coding 21329 chr4 47531780 47531934 + 0 NA intron (NM_020453, intron 5 of 22) intron (NM_020453, intron 5 of 22) 46464 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 26580 chr7 91880711 91880848 + 0 NA promoter-TSS (NM_001301134) promoter-TSS (NM_001301134) -59 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 7130 chr12 56267091 56267181 + 0 NA promoter-TSS (NM_001099337) promoter-TSS (NM_001099337) -147 NM_001099337 93058 Hs.4096 NM_144576 ENSG00000135469 COQ10A - coenzyme Q10A protein-coding 18277 chr20 55488736 55488840 + 0 NA Intergenic MIRb|SINE|MIR -61591 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 7285 chr12 76084705 76084819 + 0 NA 5' UTR (NM_004537, exon 1 of 15) 5' UTR (NM_004537, exon 1 of 15) 271 NM_001307924 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 7016 chr12 52050868 52051002 + 0 NA promoter-TSS (NM_002135) promoter-TSS (NM_002135) -467 NM_173157 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 7609 chr12 107685732 107685904 + 0 NA promoter-TSS (NM_001317963) promoter-TSS (NM_001317963) 86 NM_007062 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 12480 chr17 41404090 41404247 + 0 NA intron (NR_040111, intron 1 of 2) MIRc|SINE|MIR 1752 NR_040111 100505782 Hs.463024 NR_040111 ENSG00000234859 LOC100505782 - uncharacterized LOC100505782 ncRNA 8841 chr14 34331811 34331915 + 0 NA Intergenic Intergenic 130399 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 30905 chrX 104419340 104419494 + 0 NA Intergenic Intergenic -146898 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 16371 chr2 135985519 135985647 + 0 NA 5' UTR (NM_001293312, exon 1 of 15) intron (NR_110199, intron 1 of 3) 101 NM_001349 1615 Hs.503787 NM_001349 ENSG00000115866 DARS HBSL|aspRS aspartyl-tRNA synthetase protein-coding 8698 chr14 22556534 22556609 + 0 NA Intergenic Intergenic 32666 NM_001344 1603 Hs.82890 NM_001344 ENSG00000129562 DAD1 OST2 defender against cell death 1 protein-coding 30120 chr9 125972233 125972296 + 0 NA Intergenic Intergenic 224065 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 28360 chr8 102906379 102906483 + 0 NA intron (NR_126339, intron 2 of 2) MLT1J|LTR|ERVL-MaLR 42160 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 18218 chr20 51595199 51595219 + 0 NA Intergenic Intergenic -32378 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells 2 protein-coding 16124 chr2 110678213 110678305 + 0 NA promoter-TSS (NM_004336) promoter-TSS (NM_004336) -152 NM_001278616 699 Hs.469649 NM_004336 ENSG00000169679 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 19040 chr22 47631657 47631796 + 0 NA promoter-TSS (NR_033377) promoter-TSS (NR_033377) 52 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 10951 chr16 4476332 4476378 + 0 NA promoter-TSS (NM_001127204) promoter-TSS (NM_001127204) 15 NM_001127204 3163 Hs.284279 NM_002134 ENSG00000103415 HMOX2 HO-2 heme oxygenase 2 protein-coding 4531 chr10 122141286 122141365 + 0 NA intron (NM_206861, intron 4 of 19) intron (NM_206861, intron 4 of 19) -22101 NM_206860 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 5568 chr11 67606764 67606969 + 0 NA promoter-TSS (NM_001166102) promoter-TSS (NM_001166102) 14 NM_001166102 4723 Hs.7744 NM_007103 ENSG00000167792 NDUFV1 CI-51K|CI51KD|UQOR1 NADH:ubiquinone oxidoreductase core subunit V1 protein-coding 21435 chr4 72209816 72209985 + 0 NA Intergenic Intergenic 170768 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 3005 chr1 235067713 235067868 + 0 NA non-coding (NR_027454, exon 3 of 4) non-coding (NR_027454, exon 3 of 4) 2028 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 20282 chr3 141276085 141276244 + 0 NA intron (NM_001282728, intron 3 of 6) Tigger3a|DNA|TcMar-Tigger 44339 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 18788 chr22 30635709 30635813 + 0 NA promoter-TSS (NM_001318370) promoter-TSS (NM_001318370) -54 NM_001318371 339665 Hs.660384 NM_001001479 ENSG00000100036 SLC35E4 - solute carrier family 35 member E4 protein-coding 9602 chr14 94486272 94486368 + 0 NA TTS (NM_001304461) TTS (NM_001304461) -9987 NM_175739 327657 Hs.317970 NM_175739 ENSG00000170054 SERPINA9 GCET1|SERPINA11|SERPINA11b serpin family A member 9 protein-coding 16581 chr2 163953543 163953619 + 0 NA Intergenic MER61E|LTR|ERV1 -217574 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 956 chr1 59139428 59139565 + 0 NA intron (NR_027120, intron 1 of 2) intron (NR_027120, intron 1 of 2) 7311 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 14822 chr19 55605328 55605485 + 0 NA Intergenic CpG 5066 NM_153219 147807 Hs.440291 NM_153219 ENSG00000171443 ZNF524 - zinc finger protein 524 protein-coding 3933 chr10 75409477 75409477 + 0 NA TTS (NR_024421) TTS (NR_024421) 320 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 29239 chr9 73348017 73348121 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 196338 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 15285 chr2 29749215 29749319 + 0 NA intron (NM_004304, intron 1 of 28) MER5A|DNA|hAT-Charlie 172344 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 31202 chrX 155071438 155071542 + 0 NA promoter-TSS (NM_001018024) promoter-TSS (NM_001018024) 70 NM_001242640 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 29215 chr9 72478272 72478411 + 0 NA Intergenic Intergenic -43460 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 21665 chr4 105474005 105474109 + 0 NA promoter-TSS (NM_006903) promoter-TSS (NM_006903) 13 NM_176866 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 26558 chr7 88289688 88289792 + 0 NA intron (NM_024636, intron 1 of 4) intron (NM_024636, intron 1 of 4) 17173 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 25383 chr6 155202093 155202115 + 0 NA intron (NM_012454, intron 13 of 25) intron (NM_012454, intron 13 of 25) -14859 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 18605 chr22 17171843 17171976 + 0 NA Intergenic CpG -6622 NM_017829 27440 Hs.26890 NM_017829 ENSG00000069998 CECR5 - cat eye syndrome chromosome region, candidate 5 protein-coding 10736 chr15 93063583 93063687 + 0 NA intron (NM_020211, intron 2 of 3) intron (NM_020211, intron 2 of 3) 9525 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 2951 chr1 232293536 232293635 + 0 NA Intergenic Intergenic 222023 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 30840 chrX 75274542 75274620 + 0 NA exon (NM_001307944, exon 1 of 7) exon (NM_001307944, exon 1 of 7) 522 NR_030774 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 10602 chr15 84748062 84748188 + 0 NA promoter-TSS (NM_014630) promoter-TSS (NM_014630) -462 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 3204 chr10 4344575 4344712 + 0 NA Intergenic Intergenic -39603 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 1284 chr1 90403266 90403370 + 0 NA Intergenic Zaphod|DNA|hAT-Tip100 313919 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 10730 chr15 92904233 92904390 + 0 NA promoter-TSS (NR_036136) promoter-TSS (NR_036136) -88 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA 24498 chr6 37624215 37624308 + 0 NA Intergenic Intergenic -68839 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 29261 chr9 75088304 75088408 + 0 NA promoter-TSS (NM_012383) promoter-TSS (NM_012383) -32 NM_001330679 54981 Hs.494186 NM_017881 ENSG00000106733 NMRK1 C9orf95|NRK1|bA235O14.2 nicotinamide riboside kinase 1 protein-coding 18901 chr22 38718559 38718663 + 0 NA intron (NM_004286, intron 4 of 11) intron (NM_004286, intron 4 of 11) 12809 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 3772 chr10 63269194 63269322 + 0 NA promoter-TSS (NR_134512) promoter-TSS (NR_134512) -35 NM_001282948 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 6441 chr12 1594267 1594382 + 0 NA promoter-TSS (NM_152441) promoter-TSS (NM_152441) -159 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 11876 chr17 870325 870422 + 0 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) -6262 NM_001205319 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 1592 chr1 117795287 117795391 + 0 NA Intergenic Intergenic 134340 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3 ganglioside induced differentiation associated protein 2 protein-coding 9715 chr14 103075765 103075814 + 0 NA Intergenic CpG -8421 NM_001330236 107984640 NM_001330236 ENSG00000283071 LOC107984640 - translation initiation factor IF-2-like protein-coding 30153 chr9 127715668 127715801 + 0 NA promoter-TSS (NM_001317037) promoter-TSS (NM_001317037) -58 NM_001345977 138428 Hs.653265 NM_001002913 ENSG00000187024 PTRH1 C9orf115|PTH1 peptidyl-tRNA hydrolase 1 homolog protein-coding 23478 chr5 149062640 149062744 + 0 NA promoter-TSS (NR_122044) promoter-TSS (NR_122044) -283 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 12375 chr17 35567959 35568076 + 0 NA promoter-TSS (NR_135479) promoter-TSS (NR_135479) -97 NR_135479 105371743 NR_135479 LINC02001 - long intergenic non-protein coding RNA 2001 ncRNA 10247 chr15 62857687 62857860 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 33816 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 13312 chr18 22914027 22914132 + 0 NA Intergenic Intergenic -19253 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 14018 chr19 7488946 7489050 + 0 NA promoter-TSS (NM_001270539) promoter-TSS (NM_001270539) 40 NM_080662 92960 Hs.515100 NM_080662 ENSG00000104883 PEX11G - peroxisomal biogenesis factor 11 gamma protein-coding 16440 chr2 148644644 148644795 + 0 NA promoter-TSS (NM_015630) promoter-TSS (NM_015630) -272 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 29489 chr9 88652454 88652538 + 0 NA promoter-TSS (NM_001100111) promoter-TSS (NM_001100111) -336 NM_001100111 286238 Hs.434185 NM_001100111 ENSG00000228189 LOC286238 - uncharacterized LOC286238 ncRNA 2997 chr1 234772518 234772687 + 0 NA Intergenic Intergenic 48560 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 18449 chr21 29002731 29002878 + 0 NA Intergenic CpG -9845 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 10558 chr15 81304117 81304206 + 0 NA intron (NM_004513, intron 4 of 6) intron (NM_004513, intron 4 of 6) 7248 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 21593 chr4 94452686 94452835 + 0 NA intron (NM_001011513, intron 1 of 12) intron (NM_001011513, intron 1 of 12) 903 NM_001011515 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 18322 chr20 57772655 57772844 + 0 NA Intergenic Intergenic -61213 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 6570 chr12 8678683 8678787 + 0 NA Intergenic Intergenic -2942 NR_123740 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 16952 chr2 203811677 203811806 + 0 NA Intergenic L2|LINE|L2 -56047 NM_001037631 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 16568 chr2 162344060 162344080 + 0 NA promoter-TSS (NM_012198) promoter-TSS (NM_012198) -3 NM_012198 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 4494 chr10 120460888 120460992 + 0 NA intron (NR_134516, intron 2 of 4) MIR|SINE|MIR 3986 NM_001318169 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 2735 chr1 220272375 220272542 + 0 NA promoter-TSS (NM_012414) promoter-TSS (NM_012414) 43 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 18488 chr21 33479846 33479884 + 0 NA non-coding (NR_040016, exon 1 of 9) non-coding (NR_040016, exon 1 of 9) 144 NR_040016 757 Hs.433668 NM_006134 ENSG00000142188 TMEM50B C21orf4|HCVP7TP3 transmembrane protein 50B protein-coding 1209 chr1 85295025 85295129 + 0 NA Intergenic Intergenic -18173 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 6898 chr12 42961461 42961610 + 0 NA Intergenic Intergenic 269319 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LOC105369739 - uncharacterized LOC105369739 ncRNA 6655 chr12 13592194 13592298 + 0 NA intron (NM_000834, intron 9 of 12) MER83B|LTR|ERV1 -215501 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 6629 chr12 12840109 12840184 + 0 NA Intergenic Intergenic 26800 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 20492 chr3 157082539 157082643 + 0 NA non-coding (NR_135546, exon 1 of 3) non-coding (NR_135546, exon 1 of 3) 750 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 6275 chr11 124954005 124954176 + 0 NA promoter-TSS (NM_025004) promoter-TSS (NM_025004) -31 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 23401 chr5 142472476 142472494 + 0 NA Intergenic MIRb|SINE|MIR 141676 NM_033137 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 5727 chr11 80163144 80163248 + 0 NA Intergenic Intergenic 599607 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 15766 chr2 70329063 70329235 + 0 NA Intergenic Intergenic -27061 NM_032822 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 15162 chr2 20822988 20823173 + 0 NA promoter-TSS (NM_001282719) promoter-TSS (NM_001282719) 50 NM_001282723 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 931 chr1 57796735 57796839 + 0 NA intron (NM_021080, intron 2 of 16) intron (NM_021080, intron 2 of 16) -63756 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 14642 chr19 48333104 48333215 + 0 NA non-coding (NR_130317, exon 6 of 6) non-coding (NR_130317, exon 6 of 6) 7160 NM_001313905 2014 Hs.9999 NM_001425 ENSG00000142227 EMP3 YMP epithelial membrane protein 3 protein-coding 17154 chr2 222318348 222318452 + 0 NA promoter-TSS (NR_136638) promoter-TSS (NR_136638) -71 NR_136638 440934 Hs.732732 NR_136638 ENSG00000237732 LOC440934 - uncharacterized LOC440934 ncRNA 6903 chr12 43835779 43835883 + 0 NA promoter-TSS (NM_001286211) promoter-TSS (NM_001286211) -30 NM_001286211 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 7975 chr13 24127183 24127277 + 0 NA intron (NM_001286792, intron 3 of 14) LTR33|LTR|ERVL -33486 NM_001166271 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 8326 chr13 64723786 64723946 + 0 NA Intergenic Intergenic -879741 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 3755 chr10 62077029 62077133 + 0 NA intron (NM_001244638, intron 5 of 6) intron (NM_001244638, intron 5 of 6) 27870 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 13694 chr18 62522950 62523079 + 0 NA promoter-TSS (NM_017742) promoter-TSS (NM_017742) -411 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 27847 chr8 53957435 53957539 + 0 NA intron (NR_104579, intron 3 of 3) intron (NR_104579, intron 3 of 3) 64969 NM_201437 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 2464 chr1 204494062 204494166 + 0 NA Intergenic Intergenic -3768 NM_002646 5287 Hs.497487 NM_002646 ENSG00000133056 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding 5413 chr11 63872070 63872247 + 0 NA intron (NM_004954, intron 1 of 16) intron (NM_004954, intron 1 of 16) -16357 NM_017490 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 30492 chrX 11968648 11968658 + 0 NA Intergenic LTR32|LTR|ERVL -169813 NM_014728 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 22804 chr5 81972264 81972272 + 0 NA 5' UTR (NM_031482, exon 1 of 8) 5' UTR (NM_031482, exon 1 of 8) 243 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 14689 chr19 49469143 49469247 + 0 NA intron (NM_153329, intron 16 of 16) intron (NM_153329, intron 16 of 16) -5014 NM_001459 2323 Hs.428 NM_001459 ENSG00000090554 FLT3LG FL|FLT3L fms related tyrosine kinase 3 ligand protein-coding 1299 chr1 91737088 91737291 + 0 NA intron (NM_001195683, intron 4 of 16) intron (NM_001195683, intron 4 of 16) 149090 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 16628 chr2 169584305 169584409 + 0 NA promoter-TSS (NM_004792) promoter-TSS (NM_004792) 17 NM_004792 9360 Hs.470544 NM_004792 ENSG00000138398 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G protein-coding 1611 chr1 119711801 119711905 + 0 NA promoter-TSS (NM_006623) promoter-TSS (NM_006623) 57 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 5109 chr11 33046000 33046133 + 0 NA intron (NM_001145541, intron 2 of 9) LTR14B|LTR|ERVK 6051 NM_001145541 55346 Hs.655341 NM_018393 ENSG00000176148 TCP11L1 dJ85M6.3 t-complex 11 like 1 protein-coding 28673 chr8 129985292 129985369 + 0 NA intron (NR_046361, intron 1 of 13) intron (NR_046361, intron 1 of 13) 23123 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 11499 chr16 67431203 67431216 + 0 NA promoter-TSS (NM_000196) promoter-TSS (NM_000196) 76 NM_000196 3291 Hs.1376 NM_000196 ENSG00000176387 HSD11B2 AME|AME1|HSD11K|HSD2|SDR9C3 hydroxysteroid 11-beta dehydrogenase 2 protein-coding 25689 chr7 12584997 12585129 + 0 NA intron (NM_001112706, intron 3 of 15) intron (NM_001112706, intron 3 of 15) -4460 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 12112 chr17 12415134 12415238 + 0 NA Intergenic Intergenic -134782 NR_034145 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 23882 chr6 2542928 2543144 + 0 NA Intergenic MER72|LTR|ERV1 91567 NR_131168 154386 Hs.680574 NM_152554 ENSG00000164385 LINC01600 C6orf195|bA145H9.2 long intergenic non-protein coding RNA 1600 ncRNA 22543 chr5 55226595 55226699 + 0 NA exon (NM_001190787, exon 3 of 7) exon (NM_001190787, exon 3 of 7) 668 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 24906 chr6 89352738 89352782 + 0 NA 5' UTR (NM_016021, exon 1 of 8) 5' UTR (NM_016021, exon 1 of 8) 140 NM_016021 51465 Hs.163776 NM_016021 ENSG00000198833 UBE2J1 CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p ubiquitin conjugating enzyme E2 J1 protein-coding 23342 chr5 140237340 140237490 + 0 NA intron (NM_032412, intron 2 of 2) MIR3|SINE|MIR 62347 NM_032412 84418 Hs.529798 NM_032412 ENSG00000120306 CYSTM1 C5orf32|ORF1-FL49 cysteine rich transmembrane module containing 1 protein-coding 27011 chr7 130904240 130904385 + 0 NA intron (NR_110472, intron 2 of 3) intron (NR_110472, intron 2 of 3) 8998 NR_110472 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 19331 chr3 33942715 33942819 + 0 NA Intergenic Intergenic 144196 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 26969 chr7 128021538 128021702 + 0 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) 9329 NM_022143 64101 Hs.655003 NM_022143 ENSG00000128594 LRRC4 NAG14|NGL-2 leucine rich repeat containing 4 protein-coding 14807 chr19 55247675 55247853 + 0 NA intron (NM_014931, intron 1 of 23) intron (NM_014931, intron 1 of 23) -2514 NR_106861 102466739 NR_106861 ENSG00000278264 MIR6803 hsa-mir-6803 microRNA 6803 ncRNA 9130 chr14 60657184 60657237 + 0 NA Intergenic CpG -7773 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 22121 chr4 186829877 186829925 + 0 NA Intergenic MLT1E2|LTR|ERVL-MaLR -106068 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 15971 chr2 96336049 96336085 + 0 NA intron (NM_001281712, intron 1 of 16) CpG 326 NM_015341 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H non-SMC condensin I complex subunit H protein-coding 19548 chr3 52536477 52536576 + 0 NA promoter-TSS (NM_001124767) promoter-TSS (NM_001124767) -79 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 13097 chr17 80035974 80036116 + 0 NA promoter-TSS (NM_019020) promoter-TSS (NM_019020) -187 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 25627 chr7 6393421 6393591 + 0 NA intron (NM_006908, intron 3 of 5) intron (NM_006908, intron 3 of 5) 19011 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|Rac-1|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding 24138 chr6 18341222 18341326 + 0 NA Intergenic Intergenic -46076 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 9444 chr14 78135543 78135660 + 0 NA Intergenic Intergenic -34772 NM_001330195 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 6866 chr12 38508329 38508478 + 0 NA Intergenic L1PA6|LINE|L1 191648 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 30022 chr9 120842916 120843094 + 0 NA promoter-TSS (NR_024408) promoter-TSS (NR_024408) 16 NM_001270427 5711 Hs.193725 NM_005047 ENSG00000095261 PSMD5 S5B proteasome 26S subunit, non-ATPase 5 protein-coding 18428 chr21 17512870 17513005 + 0 NA promoter-TSS (NM_001207064) promoter-TSS (NM_001207064) 31 NM_001207063 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR coxsackie virus and adenovirus receptor protein-coding 15188 chr2 25301557 25301661 + 0 NA intron (NM_022552, intron 2 of 22) intron (NM_022552, intron 2 of 22) 27112 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 699 chr1 40373641 40373768 + 0 NA promoter-TSS (NM_022733) promoter-TSS (NM_022733) -2 NM_022733 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 29582 chr9 94166713 94166869 + 0 NA Intergenic CpG -9166 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 16547 chr2 160492801 160492855 + 0 NA intron (NM_016836, intron 1 of 13) CpG 979 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 28857 chr8 144901569 144901673 + 0 NA promoter-TSS (NM_001109689) promoter-TSS (NM_001109689) -160 NM_021061 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 5195 chr11 43311944 43312048 + 0 NA promoter-TSS (NM_001142930) promoter-TSS (NM_001142930) 41 NM_006595 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 20048 chr3 123818854 123819036 + 0 NA intron (NM_053026, intron 3 of 32) intron (NM_053026, intron 3 of 32) 65357 NM_053026 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 9761 chr14 105603532 105603731 + 0 NA Intergenic (CCAGC)n|Simple_repeat|Simple_repeat -17485 NR_107038 102465871 NR_107038 ENSG00000274172 MIR8071-1 hsa-mir-8071-1 microRNA 8071-1 ncRNA 8263 chr13 49585587 49585691 + 0 NA promoter-TSS (NM_018191) promoter-TSS (NM_018191) -56 NM_018191 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 2908 chr1 229070309 229070339 + 0 NA Intergenic Intergenic 104477 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 29938 chr9 114805778 114805839 + 0 NA exon (NM_005118, exon 1 of 4) exon (NM_005118, exon 1 of 4) 320 NM_005118 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A tumor necrosis factor superfamily member 15 protein-coding 27278 chr7 156640620 156640691 + 0 NA promoter-TSS (NM_030936) promoter-TSS (NM_030936) -1 NR_026865 129790 Hs.647014 NM_032625 ENSG00000182648 C7orf13 MY040 chromosome 7 open reading frame 13 ncRNA 22260 chr5 14908340 14908515 + 0 NA Intergenic Intergenic -36649 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 4483 chr10 119680259 119680363 + 0 NA Intergenic Intergenic 28941 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 15821 chr2 74198470 74198596 + 0 NA promoter-TSS (NM_006636) promoter-TSS (NM_006636) -30 NR_027405 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 11886 chr17 996692 996813 + 0 NA promoter-TSS (NM_013337).3 promoter-TSS (NM_013337).3 -141 NM_013337 29928 Hs.745034 NM_013337 ENSG00000177370 TIMM22 TEX4|TIM22 translocase of inner mitochondrial membrane 22 protein-coding 20670 chr3 172750601 172750715 + 0 NA promoter-TSS (NM_001258316) promoter-TSS (NM_001258316) -27 NM_001258316 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 5291 chr11 58392878 58392982 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger 10479 NM_001005469 441608 Hs.553826 NM_001005469 ENSG00000172769 OR5B3 OR11-239|OR5B13|OST129 olfactory receptor family 5 subfamily B member 3 protein-coding 20419 chr3 152021995 152022187 + 0 NA Intergenic L1M1|LINE|L1 -93916 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 4758 chr11 7281221 7281340 + 0 NA intron (NM_175733, intron 1 of 6) intron (NM_175733, intron 1 of 6) 29330 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 12806 chr17 61474750 61474832 + 0 NA intron (NM_018488, intron 4 of 7) Mam_R4|LINE|Dong-R4 18303 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box 4 protein-coding 25444 chr6 160972244 160972348 + 0 NA Intergenic Intergenic -19431 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 19725 chr3 98446053 98446184 + 0 NA Intergenic Intergenic -23362 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 15966 chr2 96260525 96260640 + 0 NA intron (NM_017849, intron 2 of 3) intron (NM_017849, intron 2 of 3) 5431 NM_017849 55654 Hs.164303 NM_017849 ENSG00000135956 TMEM127 - transmembrane protein 127 protein-coding 27793 chr8 48870277 48870496 + 0 NA Intergenic CpG 51054 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 24388 chr6 31972135 31972318 + 0 NA promoter-TSS (NM_005510) promoter-TSS (NM_005510) 29 NM_005510 1797 Hs.153299 NM_005510 ENSG00000204348 DXO DOM3L|DOM3Z|NG6|RAI1 decapping exoribonuclease protein-coding 3288 chr10 12043337 12043441 + 0 NA promoter-TSS (NM_080599) promoter-TSS (NM_080599) -219 NM_080599 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense transcripts homolog (yeast) protein-coding 17010 chr2 208266040 208266147 + 0 NA promoter-TSS (NM_001178000) promoter-TSS (NM_001178000) -174 NM_152671 200576 Hs.744997 NM_015040 ENSG00000115020 PIKFYVE CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29 phosphoinositide kinase, FYVE-type zinc finger containing protein-coding 12824 chr17 62861016 62861104 + 0 NA Intergenic Intergenic 52558 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 LOC101927877 - uncharacterized LOC101927877 ncRNA 29992 chr9 116842861 116842957 + 0 NA intron (NM_014010, intron 10 of 21) intron (NM_014010, intron 10 of 21) 155607 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 2527 chr1 207393822 207393936 + 0 NA Intergenic LTR3B_|LTR|ERVK -60421 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 6974 chr12 49538945 49539049 + 0 NA promoter-TSS (NM_001314030) promoter-TSS (NM_001314030) -160 NM_012284 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 11634 chr16 74998832 74998936 + 0 NA promoter-TSS (NM_032268) promoter-TSS (NM_032268) -133 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 8987 chr14 51342334 51342438 + 0 NA intron (NR_038358, intron 1 of 4) MLT1E1A|LTR|ERVL-MaLR 8993 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 29801 chr9 108479093 108479197 + 0 NA Intergenic MamRep605|LTR?|LTR? 376850 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 24848 chr6 82022739 82022855 + 0 NA Intergenic Intergenic -208605 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 1346 chr1 94735737 94735821 + 0 NA intron (NR_104131, intron 1 of 4) intron (NR_104131, intron 1 of 4) 10121 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 8004 chr13 26557482 26557679 + 0 NA promoter-TSS (NM_006646) promoter-TSS (NM_006646) -123 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WAS protein family member 3 protein-coding 15032 chr2 12303541 12303645 + 0 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 104463 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 30864 chrX 85003757 85003861 + 0 NA promoter-TSS (NM_198450) promoter-TSS (NM_198450) -83 NM_198450 139322 Hs.512181 NM_198450 ENSG00000155008 APOOL CXorf33|FAM121A|Mic27|UNQ8193 apolipoprotein O like protein-coding 25930 chr7 27442542 27442646 + 0 NA Intergenic MER39|LTR|ERV1 -173380 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 25552 chr7 2314630 2314771 + 0 NA promoter-TSS (NM_013321) promoter-TSS (NM_013321) -225 NM_013321 29886 Hs.584900 NM_013321 ENSG00000106266 SNX8 Mvp1 sorting nexin 8 protein-coding 22040 chr4 176274602 176274706 + 0 NA Intergenic Intergenic -5432 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 7356 chr12 85469574 85469678 + 0 NA Intergenic LTR5_Hs|LTR|ERVK 189368 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 26616 chr7 94333969 94334073 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -60540 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 OI4 collagen type I alpha 2 chain protein-coding 22026 chr4 174334754 174334789 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -50520 NM_012180 26269 Hs.76917 NM_012180 ENSG00000164117 FBXO8 DC10|FBS|FBX8 F-box protein 8 protein-coding 2424 chr1 203026467 203026571 + 0 NA promoter-TSS (NM_001304332) promoter-TSS (NM_001304332) -2 NM_001304332 8497 Hs.153648 NM_015053 ENSG00000143847 PPFIA4 - PTPRF interacting protein alpha 4 protein-coding 3471 chr10 27100443 27100476 + 0 NA promoter-TSS (NM_001256053) promoter-TSS (NM_001256053) 39 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 8730 chr14 23306681 23306785 + 0 NA promoter-TSS (NM_001199839) promoter-TSS (NM_001199839) -29 NM_004050 599 Hs.410026 NM_004050 ENSG00000129473 BCL2L2 BCL-W|BCL2-L-2|BCLW|PPP1R51 BCL2 like 2 protein-coding 23773 chr5 176388951 176389055 + 0 NA promoter-TSS (NM_001256539) promoter-TSS (NM_001256539) -76 NM_001291305 51491 Hs.696283 NM_016391 ENSG00000048162 NOP16 HSPC111|HSPC185 NOP16 nucleolar protein protein-coding 27270 chr7 155702891 155702924 + 0 NA intron (NM_053043, intron 6 of 17) intron (NM_053043, intron 6 of 17) 58398 NM_053043 155435 Hs.591815 NM_053043 ENSG00000184863 RBM33 PRR8 RNA binding motif protein 33 protein-coding 8233 chr13 46984071 46984209 + 0 NA Intergenic Intergenic -87064 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 15218 chr2 26978244 26978399 + 0 NA intron (NM_012326, intron 1 of 6) intron (NM_012326, intron 1 of 6) 7950 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 14084 chr19 10644840 10644994 + 0 NA TTS (NM_020428) TTS (NM_020428) 8955 NR_024333 147727 Hs.631616 NR_024333 ENSG00000267100 ILF3-AS1 - ILF3 antisense RNA 1 (head to head) ncRNA 29749 chr9 105912972 105913111 + 0 NA Intergenic MIRc|SINE|MIR 218516 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 18012 chr20 40632677 40632781 + 0 NA Intergenic LTR33A|LTR|ERVL 56511 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 13784 chr18 74806215 74806318 + 0 NA intron (NM_001146189, intron 3 of 6) intron (NM_001146189, intron 3 of 6) 175303 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 11423 chr16 57377299 57377500 + 0 NA intron (NM_001304392, intron 1 of 1) intron (NM_001304392, intron 1 of 1) 4938 NM_002996 6376 Hs.531668 NM_002996 ENSG00000006210 CX3CL1 ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin C-X3-C motif chemokine ligand 1 protein-coding 23660 chr5 163914974 163915078 + 0 NA Intergenic LTR1A1|LTR|ERV1 409498 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 2025 chr1 167797119 167797223 + 0 NA Intergenic Intergenic 75221 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 16607 chr2 167134855 167134959 + 0 NA intron (NR_046665, intron 1 of 1) MER44B|DNA|TcMar-Tigger 6048 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 30365 chr9 136791223 136791327 + 0 NA promoter-TSS (NM_032928) promoter-TSS (NM_032928) -50 NM_032928 85014 Hs.356744 NM_032928 ENSG00000244187 TMEM141 - transmembrane protein 141 protein-coding 7820 chr12 123085826 123085979 + 0 NA intron (NM_001300801, intron 1 of 24) intron (NM_001300801, intron 1 of 24) 4518 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 LOC100507091 - uncharacterized LOC100507091 ncRNA 12755 chr17 57662976 57663110 + 0 NA intron (NM_138962, intron 11 of 13) intron (NM_138962, intron 11 of 13) -54631 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 11644 chr16 75234328 75234424 + 0 NA intron (NM_001170715, intron 5 of 6) intron (NM_001170715, intron 5 of 6) 4706 NM_001170721 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 24286 chr6 28895604 28895708 + 0 NA promoter-TSS (NR_104117).5 promoter-TSS (NR_104117).5 -874 NR_104117 414760 Hs.211005 NR_104117 ENSG00000224157 HCG14 dJ111M5.4 HLA complex group 14 (non-protein coding) ncRNA 16199 chr2 118430949 118431079 + 0 NA Intergenic MamTip2|DNA|hAT-Tip100 171952 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 9119 chr14 59484392 59484493 + 0 NA promoter-TSS (NM_144581) promoter-TSS (NM_144581) -1 NM_001284204 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8-associated membrane protein protein-coding 28758 chr8 140106459 140106563 + 0 NA intron (NM_031466, intron 17 of 22) intron (NM_031466, intron 17 of 22) -5976 NR_144431 359809 Hs.26814 NR_144431 PEG13 - paternally expressed 13 ncRNA 899 chr1 54287405 54287471 + 0 NA intron (NM_145716, intron 4 of 17) intron (NM_145716, intron 4 of 17) 50995 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 15507 chr2 47323241 47323359 + 0 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -12015 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 25682 chr7 12297841 12297996 + 0 NA Intergenic LTR49|LTR|ERV1 86696 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B - transmembrane protein 106B protein-coding 25312 chr6 149566124 149566248 + 0 NA promoter-TSS (NM_138785) promoter-TSS (NM_138785) -206 NM_138785 116254 Hs.438872 NM_138785 ENSG00000055211 GINM1 C6orf72|dJ12G14.2 glycoprotein integral membrane 1 protein-coding 22818 chr5 83077395 83077499 + 0 NA promoter-TSS (NM_001318012) promoter-TSS (NM_001318012) 6 NM_174909 153339 Hs.355606 NM_174909 ENSG00000174695 TMEM167A TMEM167 transmembrane protein 167A protein-coding 28642 chr8 127668872 127668976 + 0 NA Intergenic Intergenic 65043 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 5924 chr11 96279723 96279827 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -61663 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 11758 chr16 83926738 83926880 + 0 NA Intergenic Intergenic -26413 NM_182981 29948 Hs.128055 NM_013370 ENSG00000140961 OSGIN1 BDGI|OKL38 oxidative stress induced growth inhibitor 1 protein-coding 1979 chr1 164772777 164772982 + 0 NA intron (NR_038072, intron 1 of 3) intron (NR_038072, intron 1 of 3) 1762 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 29846 chr9 110180902 110181006 + 0 NA Intergenic LTR8B|LTR|ERV1 27179 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 6341 chr11 129637574 129637676 + 0 NA Intergenic MIRb|SINE|MIR -20356 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 21283 chr4 36244548 36244675 + 0 NA promoter-TSS (NM_015230) promoter-TSS (NM_015230) -254 NM_015230 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 23315 chr5 139232411 139232515 + 0 NA Intergenic MER61E|LTR|ERV1 -34087 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 19887 chr3 112546315 112546419 + 0 NA intron (NM_022488, intron 5 of 11) MER44B|DNA|TcMar-Tigger 15596 NM_001278712 64422 Hs.477126 NM_022488 ENSG00000144848 ATG3 APG3|APG3-LIKE|APG3L|PC3-96 autophagy related 3 protein-coding 11346 chr16 53041805 53041958 + 0 NA intron (NR_136518, intron 2 of 2) intron (NR_136518, intron 2 of 2) 10992 NR_136518 105371267 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 18503 chr21 34890036 34890125 + 0 NA intron (NM_001754, intron 3 of 8) CpG -1390 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 12967 chr17 74213368 74213472 + 0 NA promoter-TSS (NR_026914) promoter-TSS (NR_026914) -99 NR_026914 85001 Hs.706954 NM_032915 ENSG00000246731 MGC16275 - uncharacterized protein MGC16275 ncRNA 15583 chr2 55923481 55923603 + 0 NA intron (NM_001039348, intron 1 of 11) CpG 621 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin like extracellular matrix protein 1 protein-coding 15459 chr2 44168450 44168579 + 0 NA promoter-TSS (NM_001033557) promoter-TSS (NM_001033557) -289 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 28333 chr8 101288058 101288162 + 0 NA Intergenic Intergenic -80783 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 9964 chr15 41832948 41833080 + 0 NA intron (NM_001198588, intron 1 of 23) L2a|LINE|L2 4929 NM_001198588 8681 Hs.198161 NM_005090 ENSG00000168970 JMJD7-PLA2G4B HsT16992|cPLA2-beta JMJD7-PLA2G4B readthrough protein-coding 18405 chr20 63864211 63864352 + 0 NA promoter-TSS (NM_199363) promoter-TSS (NM_199363) -947 NM_001243895 7165 Hs.473296 NM_003288 ENSG00000101150 TPD52L2 D54|TPD54 tumor protein D52 like 2 protein-coding 16659 chr2 172248950 172249054 + 0 NA Intergenic Intergenic 145996 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 31160 chrX 152830709 152830797 + 0 NA promoter-TSS (NM_004344) promoter-TSS (NM_004344) 4 NM_004344 1069 Hs.82794 NM_004344 ENSG00000147400 CETN2 CALT|CEN2 centrin 2 protein-coding 1609 chr1 119674317 119674379 + 0 NA Intergenic LTR64|LTR|ERV1 -26581 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 794 chr1 45012096 45012241 + 0 NA promoter-TSS (NM_024602) promoter-TSS (NM_024602) 35 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 4983 chr11 19660264 19660419 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -52994 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 18991 chr22 43812222 43812370 + 0 NA promoter-TSS (NM_022785) promoter-TSS (NM_022785) 41 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 13564 chr18 50009905 50010009 + 0 NA intron (NM_001080467, intron 4 of 39) intron (NM_001080467, intron 4 of 39) 116606 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 1780 chr1 154001908 154002012 + 0 NA exon (NM_207308, exon 36 of 40) exon (NM_207308, exon 36 of 40) 11197 NM_001030 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 20830 chr3 184733349 184733453 + 0 NA Intergenic Intergenic -21353 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 - MAGE family member F1 protein-coding 16552 chr2 160907070 160907174 + 0 NA Intergenic Intergenic -229833 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 11199 chr16 29816054 29816149 + 0 NA promoter-TSS (NM_024516) promoter-TSS (NM_024516) -106 NM_024516 79447 Hs.702841 NM_024516 ENSG00000280789 PAGR1 C16orf53|GAS|PA1 PAXIP1 associated glutamate rich protein 1 protein-coding 674 chr1 39142823 39142927 + 0 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 58708 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 14304 chr19 19733084 19733227 + 0 NA promoter-TSS (NM_021030) promoter-TSS (NM_021030) -43 NM_021030 7561 Hs.659932 NM_021030 ENSG00000105708 ZNF14 GIOT-4|KOX6 zinc finger protein 14 protein-coding 1317 chr1 93345698 93345790 + 0 NA promoter-TSS (NR_034089) promoter-TSS (NR_034089) 67 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 30276 chr9 131531311 131531415 + 0 NA promoter-TSS (NM_001135954) promoter-TSS (NM_001135954) -88 NM_001135954 83549 Hs.9597 NM_031432 ENSG00000130717 UCK1 URK1 uridine-cytidine kinase 1 protein-coding 9299 chr14 69717005 69717109 + 0 NA Intergenic Intergenic -50030 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 2430 chr1 203342644 203342748 + 0 NA intron (NR_103757, intron 1 of 1) intron (NR_103757, intron 1 of 1) 8733 NM_002023 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 12224 chr17 21551582 21551821 + 0 NA promoter-TSS (NM_001113434) promoter-TSS (NM_001113434) -23 NM_001113434 339263 Hs.514016 NM_001113434 ENSG00000212719 C17orf51 - chromosome 17 open reading frame 51 protein-coding 1503 chr1 110963892 110964070 + 0 NA promoter-TSS (NM_001006945) promoter-TSS (NM_001006945) -37 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 6366 chr11 130637127 130637243 + 0 NA Intergenic Intergenic -29550 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 30702 chrX 49058869 49058973 + 0 NA promoter-TSS (NM_001163321) promoter-TSS (NM_001163321) -45 NM_033626 90060 Hs.522643 NM_033626 ENSG00000147144 CCDC120 JM11 coiled-coil domain containing 120 protein-coding 7792 chr12 122078626 122078762 + 0 NA promoter-TSS (NM_014938) promoter-TSS (NM_014938) -34 NM_014938 22877 Hs.437153 NM_014938 ENSG00000175727 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 12023 chr17 7215031 7215147 + 0 NA intron (NR_135527, intron 3 of 20) intron (NR_135527, intron 3 of 20) -2036 NM_001270447 37 Hs.437178 NM_000018 ENSG00000072778 ACADVL ACAD6|LCACD|VLCAD acyl-CoA dehydrogenase, very long chain protein-coding 21218 chr4 18022020 18022110 + 0 NA promoter-TSS (NM_153686) promoter-TSS (NM_153686) -190 NM_153686 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 20093 chr3 127456796 127456855 + 0 NA Intergenic Intergenic -66155 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 28637 chr8 127427001 127427104 + 0 NA intron (NR_117100, intron 4 of 5) intron (NR_117100, intron 4 of 5) 11440 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 24478 chr6 36986362 36986452 + 0 NA non-coding (NR_130739, exon 1 of 12) non-coding (NR_130739, exon 1 of 12) 144 NR_130739 23787 Hs.485262 NM_014341 ENSG00000137409 MTCH1 CGI-64|PIG60|PSAP|SLC25A49 mitochondrial carrier 1 protein-coding 20878 chr3 187139454 187139602 + 0 NA promoter-TSS (NM_052969) promoter-TSS (NM_052969) -53 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L RPL39L1 ribosomal protein L39 like protein-coding 15017 chr2 11710330 11710490 + 0 NA intron (NM_001261428, intron 1 of 21) intron (NM_001261428, intron 1 of 21) -13924 NM_001261427 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 22480 chr5 44002739 44002821 + 0 NA Intergenic Intergenic 385902 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 20229 chr3 136985122 136985204 + 0 NA intron (NM_144717, intron 3 of 6) intron (NM_144717, intron 3 of 6) 27298 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 12608 chr17 47831518 47831622 + 0 NA promoter-TSS (NM_145255) promoter-TSS (NM_145255) -29 NR_037575 124995 Hs.347535 NM_145255 ENSG00000159111 MRPL10 L10MT|MRP-L10|MRP-L8|MRPL8|RPML8 mitochondrial ribosomal protein L10 protein-coding 23531 chr5 151072802 151072840 + 0 NA intron (NM_001252390, intron 1 of 17) L3|LINE|CR1 -7690 NM_001258455 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 7637 chr12 109875615 109875768 + 0 NA intron (NM_016433, intron 1 of 4) intron (NM_016433, intron 1 of 4) 4797 NM_016433 51228 Hs.381256 NM_016433 ENSG00000139433 GLTP - glycolipid transfer protein protein-coding 15301 chr2 30807443 30807535 + 0 NA promoter-TSS (NM_144575) promoter-TSS (NM_144575) -44 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 10280 chr15 64703326 64703326 + 0 NA promoter-TSS (NM_001301302) promoter-TSS (NM_001301302) -45 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 28251 chr8 96333290 96333297 + 0 NA intron (NM_001290225, intron 10 of 10) intron (NM_001290225, intron 10 of 10) 53355 NR_125829 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 24172 chr6 20661912 20662060 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 127529 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 16439 chr2 148607750 148607854 + 0 NA Intergenic Intergenic -37189 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 6993 chr12 50265885 50266037 + 0 NA intron (NM_016357, intron 1 of 10) intron (NM_016357, intron 1 of 10) 17609 NM_001113546 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|SREBP3 LIM domain and actin binding 1 protein-coding 15450 chr2 43637143 43637272 + 0 NA promoter-TSS (NM_172069) promoter-TSS (NM_172069) -93 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 30530 chrX 16870306 16870486 + 0 NA promoter-TSS (NM_001198719) promoter-TSS (NM_001198719) 15 NM_002893 5931 Hs.495755 NM_002893 ENSG00000102054 RBBP7 RbAp46 RB binding protein 7, chromatin remodeling factor protein-coding 12630 chr17 48830899 48831003 + 0 NA promoter-TSS (NM_001261390) promoter-TSS (NM_001261390) -37 NM_001261395 10241 Hs.514920 NM_005831 ENSG00000136436 CALCOCO2 NDP52 calcium binding and coiled-coil domain 2 protein-coding 5339 chr11 61362173 61362279 + 0 NA promoter-TSS (NM_001161454) promoter-TSS (NM_001161454) 57 NM_001161454 220002 Hs.22546 NM_153611 ENSG00000162144 CYB561A3 CYBASC3|LCYTB cytochrome b561 family member A3 protein-coding 20507 chr3 157532682 157532814 + 0 NA Intergenic Intergenic -10596 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 PQLC2L C3orf55 PQ loop repeat containing 2 like protein-coding 18823 chr22 32987463 32987567 + 0 NA intron (NM_001135774, intron 2 of 13) intron (NM_001135774, intron 2 of 13) 19306 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 28721 chr8 133209426 133209530 + 0 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 18439 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 1252 chr1 87795409 87795542 + 0 NA Intergenic Intergenic -423820 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 26884 chr7 116716730 116716870 + 0 NA intron (NM_001127500, intron 2 of 20) intron (NM_001127500, intron 2 of 20) 44410 NM_001324401 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 7649 chr12 110450334 110450481 + 0 NA promoter-TSS (NM_001278556) promoter-TSS (NM_001278556) 4 NM_001278556 10094 Hs.524741 NM_001278556 ENSG00000111229 ARPC3 ARC21|p21-Arc actin related protein 2/3 complex subunit 3 protein-coding 10739 chr15 93088519 93088597 + 0 NA promoter-TSS (NM_001166287) promoter-TSS (NM_001166287) -35 NM_001166287 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 8443 chr13 93603164 93603268 + 0 NA intron (NM_005708, intron 2 of 8) AluJr|SINE|Alu 255257 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 555 chr1 32650508 32650631 + 0 NA promoter-TSS (NM_001308135) promoter-TSS (NM_001308135) 21 NM_001308135 339487 Hs.655921 NM_178547 ENSG00000176261 ZBTB8OS ARCH|ARCH2 zinc finger and BTB domain containing 8 opposite strand protein-coding 1037 chr1 65090597 65090706 + 0 NA Intergenic MIRc|SINE|MIR -22905 NM_001321852 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 16058 chr2 102736776 102736929 + 0 NA promoter-TSS (NM_001321345) promoter-TSS (NM_001321345) 36 NM_001322081 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 10716 chr15 91116467 91116538 + 0 NA intron (NM_001323039, intron 1 of 12) intron (NM_001323039, intron 1 of 12) 14846 NM_001323040 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 6879 chr12 40829795 40829899 + 0 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 1909 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 21384 chr4 55609671 55609805 + 0 NA intron (NM_001292045, intron 2 of 8) intron (NM_001292045, intron 2 of 8) -17526 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 21634 chr4 101650155 101650276 + 0 NA Intergenic Intergenic -140392 NM_017935 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B-cell scaffold protein with ankyrin repeats 1 protein-coding 25596 chr7 5418755 5418833 + 0 NA intron (NM_001080495, intron 2 of 29) intron (NM_001080495, intron 2 of 29) 4752 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 24625 chr6 45617577 45617643 + 0 NA Intergenic Intergenic 195033 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 4164 chr10 97574823 97574827 + 0 NA intron (NM_001346797, intron 1 of 7) intron (NM_001346797, intron 1 of 7) 2384 NM_020349 26287 Hs.73708 NM_020349 ENSG00000165887 ANKRD2 ARPP ankyrin repeat domain 2 protein-coding 7926 chr13 16689236 16689390 + 0 NA Intergenic ALR/Alpha|Satellite|centr -1505984 NR_027278 26080 Hs.448583 NR_027278 ENSG00000279516 FAM230C LINC00281|NCRNA00281 family with sequence similarity 230 member C ncRNA 29959 chr9 115590244 115590348 + 0 NA Intergenic LTR78|LTR|ERV1 153943 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 15613 chr2 60581866 60581970 + 0 NA Intergenic CpG -28420 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 26691 chr7 100081694 100081890 + 0 NA promoter-TSS (NM_001318135) promoter-TSS (NM_001318135) -28 NM_001278292 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding 24555 chr6 42226962 42227086 + 0 NA 3' UTR (NM_033502, exon 18 of 18) 3' UTR (NM_033502, exon 18 of 18) -9129 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 5321 chr11 59776581 59776685 + 0 NA intron (NM_004177, intron 2 of 10) intron (NM_004177, intron 2 of 10) 21574 NM_004177 6809 Hs.180711 NM_004177 ENSG00000166900 STX3 STX3A syntaxin 3 protein-coding 22083 chr4 183722959 183723050 + 0 NA Intergenic CpG 63737 NM_199053 60684 Hs.443240 NM_021942 ENSG00000168538 TRAPPC11 C4orf41|FOIGR|GRY|LGMD2S trafficking protein particle complex 11 protein-coding 5800 chr11 86551490 86551591 + 0 NA intron (NM_001014811, intron 3 of 13) intron (NM_001014811, intron 3 of 13) 120658 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 12947 chr17 72466231 72466335 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 123472 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 31034 chrX 123818465 123818616 + 0 NA Intergenic Intergenic -41272 NM_001204401 331 Hs.356076 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 6195 chr11 119572640 119572820 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -147745 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 13404 chr18 31943320 31943324 + 0 NA promoter-TSS (NM_014939) promoter-TSS (NM_014939) -194 NM_014939 22878 Hs.202001 NM_014939 ENSG00000153339 TRAPPC8 GSG1|HsT2706|KIAA1012|TRS85 trafficking protein particle complex 8 protein-coding 21886 chr4 147731749 147731892 + 0 NA promoter-TSS (NM_024605) promoter-TSS (NM_024605) -482 NM_024605 79658 Hs.368631 NM_024605 ENSG00000071205 ARHGAP10 GRAF2|PS-GAP|PSGAP Rho GTPase activating protein 10 protein-coding 2355 chr1 200772274 200772378 + 0 NA intron (NM_203459, intron 2 of 16) intron (NM_203459, intron 2 of 16) 32768 NM_001297707 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 5495 chr11 65818108 65818114 + 0 NA Intergenic CpG -15828 NM_152760 254122 Hs.591950 NM_152760 ENSG00000172803 SNX32 SNX6B sorting nexin 32 protein-coding 25567 chr7 3043064 3043168 + 0 NA intron (NM_001324281, intron 1 of 25) intron (NM_001324281, intron 1 of 25) 829 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|PPBL caspase recruitment domain family member 11 protein-coding 15980 chr2 96772013 96772133 + 0 NA intron (NM_020184, intron 1 of 6) intron (NM_020184, intron 1 of 6) 11171 NM_020184 26504 Hs.175043 NM_020184 ENSG00000158158 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 9720 chr14 103253891 103254035 + 0 NA Intergenic LTR23|LTR|ERV1 -63321 NR_135269 105378183 Hs.132624 NR_135269 LOC105378183 - uncharacterized LOC105378183 ncRNA 26219 chr7 47380125 47380229 + 0 NA intron (NM_022748, intron 16 of 30) intron (NM_022748, intron 16 of 30) 201967 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 27103 chr7 139483619 139483723 + 0 NA promoter-TSS (NM_198508) promoter-TSS (NM_198508) 40 NM_198508 346689 Hs.17572 NM_198508 ENSG00000188883 KLRG2 CLEC15B killer cell lectin like receptor G2 protein-coding 20142 chr3 130111632 130111639 + 0 NA promoter-TSS (NR_024252) promoter-TSS (NR_024252) -202 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 9257 chr14 67695697 67695871 + 0 NA promoter-TSS (NM_001252650) promoter-TSS (NM_001252650) 9 NM_016026 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) protein-coding 5328 chr11 60906522 60906678 + 0 NA promoter-TSS (NM_014502) promoter-TSS (NM_014502) -11 NM_014502 27339 Hs.502705 NM_014502 ENSG00000110107 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 28412 chr8 108443411 108443515 + 0 NA promoter-TSS (NM_001329494) promoter-TSS (NM_001329494) -120 NM_001329495 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 27171 chr7 143979477 143979581 + 0 NA Intergenic Intergenic 19602 NM_012369 26211 Hs.553595 NM_012369 ENSG00000213215 OR2F1 7M1-2|OLF3|OR14-60|OR2F3|OR2F3P|OR2F4|OR2F5|OR7-139|OR7-140 olfactory receptor family 2 subfamily F member 1 (gene/pseudogene) protein-coding 29607 chr9 95102212 95102268 + 0 NA intron (NM_000136, intron 14 of 14) intron (NM_000136, intron 14 of 14) -16146 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 12263 chr17 28576882 28576994 + 0 NA promoter-TSS (NM_005165) promoter-TSS (NM_005165) -5 NM_005165 230 Hs.155247 NM_005165 ENSG00000109107 ALDOC ALDC aldolase, fructose-bisphosphate C protein-coding 11969 chr17 4790309 4790413 + 0 NA 3' UTR (NM_001014985, exon 4 of 4) 3' UTR (NM_001014985, exon 4 of 4) 1402 NM_001014985 388323 Hs.131035 NM_001014985 ENSG00000182327 GLTPD2 - glycolipid transfer protein domain containing 2 protein-coding 22259 chr5 14871910 14872049 + 0 NA promoter-TSS (NM_054027) promoter-TSS (NM_054027) -201 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 24390 chr6 32130293 32130422 + 0 NA promoter-TSS (NM_022110) promoter-TSS (NM_022110) -67 NM_022110 63943 Hs.520042 NM_022110 ENSG00000204315 FKBPL DIR1|FKBP4|NG7|WISP39 FK506 binding protein like protein-coding 11839 chr16 89171571 89171675 + 0 NA promoter-TSS (NM_004933) promoter-TSS (NM_004933) -132 NM_004933 1013 Hs.148090 NM_004933 ENSG00000129910 CDH15 CDH14|CDH3|CDHM|MCAD|MRD3 cadherin 15 protein-coding 26000 chr7 32892076 32892212 + 0 NA promoter-TSS (NM_015483) promoter-TSS (NM_015483) -288 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 25967 chr7 30318575 30318723 + 0 NA intron (NM_147128, intron 1 of 4) intron (NM_147128, intron 1 of 4) -28759 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 21053 chr3 196338574 196338680 + 0 NA promoter-TSS (NR_037950) promoter-TSS (NR_037950) -207 NM_001204898 116211 Hs.733264 NM_138461 ENSG00000145107 TM4SF19 OCTM4 transmembrane 4 L six family member 19 protein-coding 28486 chr8 118113079 118113202 + 0 NA Intergenic Intergenic -1321 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 16502 chr2 156935795 156935907 + 0 NA Intergenic Intergenic -321747 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 26009 chr7 33109445 33109527 + 0 NA promoter-TSS (NM_203288) promoter-TSS (NM_203288) -96 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 retinitis pigmentosa 9 (autosomal dominant) protein-coding 3473 chr10 27154342 27154446 + 0 NA promoter-TSS (NM_001253866) promoter-TSS (NM_001253866) 26 NM_139312 10730 Hs.74647 NM_014263 ENSG00000136758 YME1L1 FTSH|MEG4|PAMP|YME1L YME1 like 1 ATPase protein-coding 28355 chr8 102807022 102807032 + 0 NA Intergenic CpG 57173 NM_001301668 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 28027 chr8 73423285 73423435 + 0 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 3286 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 22337 chr5 32174237 32174405 + 0 NA promoter-TSS (NM_022130) promoter-TSS (NM_022130) -2 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 21551 chr4 86934787 86934895 + 0 NA promoter-TSS (NR_038841) promoter-TSS (NR_038841) 9 NR_038841 100506746 Hs.657766 NR_038841 ENSG00000163633 LOC100506746 - uncharacterized LOC100506746 ncRNA 7884 chr12 130126225 130126305 + 0 NA Intergenic Intergenic 35413 NR_033834 440119 Hs.288262 NR_033834 ENSG00000250208 FZD10-AS1 - FZD10 antisense RNA 1 (head to head) ncRNA 26536 chr7 87059758 87059862 + 0 NA promoter-TSS (NM_001142749) promoter-TSS (NM_001142749) -112 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 18871 chr22 37674997 37675150 + 0 NA promoter-TSS (NM_002305) promoter-TSS (NM_002305) -533 NM_002305 3956 Hs.445351 NM_002305 ENSG00000100097 LGALS1 GAL1|GBP galectin 1 protein-coding 5868 chr11 94017630 94017671 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -3562 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin like 1 protein-coding 29686 chr9 99105533 99105620 + 0 NA intron (NM_001130916, intron 1 of 7) CpG 487 NM_004612 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 9275 chr14 68687859 68687963 + 0 NA Intergenic L1ME4b|LINE|L1 -59124 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 174 chr1 11980289 11980338 + 0 NA 5' UTR (NM_001127660, exon 1 of 18) 5' UTR (NM_001127660, exon 1 of 18) 132 NM_014874 9927 Hs.376681 NM_014874 ENSG00000116688 MFN2 CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF mitofusin 2 protein-coding 19349 chr3 37223259 37223308 + 0 NA Intergenic Intergenic -19908 NM_002078 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 16227 chr2 120238818 120238971 + 0 NA Intergenic Intergenic -13944 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 11232 chr16 30634328 30634477 + 0 NA Intergenic CpG -16300 NM_001320464 78994 Hs.293629 NM_024031 ENSG00000156858 PRR14 - proline rich 14 protein-coding 9280 chr14 68942001 68942031 + 0 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 37350 NM_001130004 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 10187 chr15 58933779 58933790 + 0 NA promoter-TSS (NR_135042) promoter-TSS (NR_135042) -108 NM_001013843 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 12169 chr17 17752168 17752323 + 0 NA intron (NM_030665, intron 2 of 5) CpG 14057 NR_130894 100861516 Hs.624874 NR_130894 ENSG00000237328 RAI1-AS1 - RAI1 antisense RNA 1 ncRNA 22383 chr5 36606629 36606660 + 0 NA 5' UTR (NM_004172, exon 1 of 10) 5' UTR (NM_004172, exon 1 of 10) 289 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 13079 chr17 78782535 78782654 + 0 NA promoter-TSS (NM_017456) promoter-TSS (NM_017456) -252 NM_004762 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 10607 chr15 85168826 85168850 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 36449 NR_049748 642423 Hs.681665 NR_049748 LOC642423 - golgin A2 pseudogene pseudo 9909 chr15 39721169 39721295 + 0 NA intron (NM_152597, intron 9 of 11) intron (NM_152597, intron 9 of 11) 61606 NM_152597 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 3681 chr10 51833144 51833248 + 0 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -133601 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 29557 chr9 92738595 92738699 + 0 NA intron (NM_015250, intron 1 of 7) intron (NM_015250, intron 1 of 7) 26154 NM_015250 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|bA526D8.1 BICD cargo adaptor 2 protein-coding 24782 chr6 71478878 71479029 + 0 NA Intergenic Intergenic 57926 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 23816 chr5 179393303 179393407 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR -47925 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 11695 chr16 79658384 79658524 + 0 NA Intergenic Intergenic -57729 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 12695 chr17 51153362 51153509 + 0 NA promoter-TSS (NM_000269) promoter-TSS (NM_000269) -101 NM_001018136 654364 Hs.463456 NM_001018136 ENSG00000011052 NME1-NME2 NM23-LV|NMELV NME1-NME2 readthrough protein-coding 3842 chr10 70578601 70578705 + 0 NA Intergenic Intergenic 24122 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 FLH2|HPLH2|P1|PFN1|PFP perforin 1 protein-coding 19610 chr3 59327339 59327443 + 0 NA Intergenic L2a|LINE|L2 -277402 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 29275 chr9 75918301 75918466 + 0 NA intron (NM_001190482, intron 1 of 36) MER5A|DNA|hAT-Charlie 27739 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 30148 chr9 127561807 127561961 + 0 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 7233 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 23570 chr5 154190331 154190485 + 0 NA promoter-TSS (NM_198321) promoter-TSS (NM_198321) -327 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 12561 chr17 44345103 44345116 + 0 NA promoter-TSS (NM_002087) promoter-TSS (NM_002087) 23 NM_002087 2896 Hs.514220 NM_002087 ENSG00000030582 GRN CLN11|GEP|GP88|PCDGF|PEPI|PGRN granulin precursor protein-coding 3358 chr10 17388312 17388351 + 0 NA intron (NR_034129, intron 1 of 2) LTR80A|LTR|ERVL 1395 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 593 chr1 34268478 34268582 + 0 NA Intergenic Intergenic 91578 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 20100 chr3 128052184 128052288 + 0 NA promoter-TSS (NM_013336) promoter-TSS (NM_013336) -133 NM_013336 29927 Hs.518236 NM_013336 ENSG00000058262 SEC61A1 HNFJ4|HSEC61|SEC61|SEC61A Sec61 translocon alpha 1 subunit protein-coding 188 chr1 12619040 12619144 + 0 NA Intergenic Intergenic -1361 NM_004753 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 15421 chr2 42169324 42169428 + 0 NA promoter-TSS (NM_019063) promoter-TSS (NM_019063) 38 NM_019063 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 7472 chr12 96467510 96467512 + 0 NA Intergenic Intergenic -22060 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 10123 chr15 52569058 52569162 + 0 NA promoter-TSS (NM_001306196) promoter-TSS (NM_001306196) 22 NM_001306196 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 8604 chr13 110222367 110222519 + 0 NA intron (NM_001303110, intron 2 of 24) intron (NM_001303110, intron 2 of 24) 84714 NM_001845 1282 Hs.17441 NM_001845 ENSG00000187498 COL4A1 BSVD|RATOR collagen type IV alpha 1 chain protein-coding 402 chr1 25892677 25892754 + 0 NA intron (NM_001145454, intron 4 of 4) intron (NM_001145454, intron 4 of 4) 13438 NM_203401 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 5221 chr11 45772024 45772177 + 0 NA non-coding (NR_027134, exon 2 of 2) non-coding (NR_027134, exon 2 of 2) 668 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 DKFZp779M0652 - uncharacterized DKFZp779M0652 ncRNA 15942 chr2 88609556 88609660 + 0 NA intron (NM_004836, intron 2 of 16) Charlie1a|DNA|hAT-Charlie 15321 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 1940 chr1 161612456 161612548 + 0 NA Intergenic CpG 6443 NR_024151 3311 Hs.662180 NR_024151 HSPA7 HSP70B heat shock protein family A (Hsp70) member 7 pseudo 16176 chr2 113603704 113603846 + 0 NA promoter-TSS (NR_024004) promoter-TSS (NR_024004) -58 NR_024004 84771 Hs.712940 NR_024004 DDX11L2 - DEAD/H-box helicase 11 like 2 pseudo 12139 chr17 16380660 16380779 + 0 NA promoter-TSS (NM_018955) promoter-TSS (NM_018955) -74 NM_001281716 7314 Hs.356190 NM_018955 ENSG00000170315 UBB HEL-S-50 ubiquitin B protein-coding 640 chr1 37448820 37448924 + 0 NA Intergenic Intergenic 25571 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 6139 chr11 117232481 117232540 + 0 NA promoter-TSS (NM_207343) promoter-TSS (NM_207343) 15 NM_004716 9159 Hs.648612 NM_004716 ENSG00000160613 PCSK7 LPC|PC7|PC8|SPC7 proprotein convertase subtilisin/kexin type 7 protein-coding 30374 chr9 136950041 136950142 + 0 NA Intergenic CpG -2225 NM_178536 286256 Hs.440519 NM_178536 ENSG00000184925 LCN12 - lipocalin 12 protein-coding 29833 chr9 109345762 109345791 + 0 NA Intergenic Intergenic -24812 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 16081 chr2 106194242 106194346 + 0 NA promoter-TSS (NM_001253875) promoter-TSS (NM_001253875) 45 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 28450 chr8 115668989 115669093 + 0 NA promoter-TSS (NM_001282903) promoter-TSS (NM_001282903) -13 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 23203 chr5 132294069 132294210 + 0 NA promoter-TSS (NM_003059) promoter-TSS (NM_003059) -313 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 9055 chr14 55271319 55271470 + 0 NA promoter-TSS (NM_017943) promoter-TSS (NM_017943) 91 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 30084 chr9 124393050 124393154 + 0 NA intron (NM_002799, intron 5 of 7) intron (NM_002799, intron 5 of 7) 22371 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 19329 chr3 33916293 33916317 + 0 NA Intergenic Intergenic 117734 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 22119 chr4 186735939 186736108 + 0 NA Intergenic Intergenic -12190 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 7565 chr12 104427075 104427179 + 0 NA Intergenic Intergenic -29787 NM_001173982 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537 carbohydrate sulfotransferase 11 protein-coding 9158 chr14 61564856 61564960 + 0 NA non-coding (NR_110416, exon 4 of 5) non-coding (NR_110416, exon 4 of 5) 5286 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 19744 chr3 98971297 98971401 + 0 NA Intergenic Intergenic -69660 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 8531 chr13 102800245 102800444 + 0 NA intron (NM_001159596, intron 1 of 8) CpG -1290 NM_024089 79070 Hs.408629 NM_024089 ENSG00000134901 KDELC1 EP58|ERp58|KDEL1 KDEL motif containing 1 protein-coding 9287 chr14 69398533 69398687 + 0 NA promoter-TSS (NM_004450) promoter-TSS (NM_004450) -58 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 6800 chr12 27999590 27999696 + 0 NA Intergenic Intergenic -27660 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 30018 chr9 120714554 120714670 + 0 NA promoter-TSS (NM_001080497) promoter-TSS (NM_001080497) -125 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 1464 chr1 109090627 109090771 + 0 NA promoter-TSS (NM_001322248) promoter-TSS (NM_001322248) -42 NR_136243 56900 Hs.82933 NM_020141 ENSG00000215717 TMEM167B AD-020|C1orf119 transmembrane protein 167B protein-coding 28704 chr8 131904355 131904459 + 0 NA 5' UTR (NM_001323555, exon 1 of 23) 5' UTR (NM_001323555, exon 1 of 23) 319 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 21570 chr4 88593307 88593323 + 0 NA intron (NM_014606, intron 1 of 25) CpG 892 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 26766 chr7 104984161 104984326 + 0 NA non-coding (NR_039981, exon 1 of 1) non-coding (NR_039981, exon 1 of 1) 6922 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 26004 chr7 32943231 32943248 + 0 NA promoter-TSS (NR_003500) promoter-TSS (NR_003500) -69 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - retinitis pigmentosa 9 pseudogene pseudo 23001 chr5 109689267 109689394 + 0 NA promoter-TSS (NM_002372) promoter-TSS (NM_002372) -36 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 20671 chr3 173113786 173113899 + 0 NA intron (NM_031955, intron 2 of 10) intron (NM_031955, intron 2 of 10) 27426 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 12602 chr17 47492625 47492773 + 0 NA promoter-TSS (NR_033934) promoter-TSS (NR_033934) -79 NR_033934 653479 Hs.537279 NR_033934 MRPL45P2 - mitochondrial ribosomal protein L45 pseudogene 2 pseudo 7058 chr12 53299598 53299653 + 0 NA promoter-TSS (NM_021640) promoter-TSS (NM_021640) -61 NM_021640 60314 Hs.655988 NM_021640 ENSG00000139637 C12orf10 Gamm1|MST024|MSTP024|MYG|MYG1 chromosome 12 open reading frame 10 protein-coding 26313 chr7 55366278 55366282 + 0 NA intron (NM_018697, intron 1 of 8) CpG 832 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 24597 chr6 43576124 43576233 + 0 NA promoter-TSS (NM_020750) promoter-TSS (NM_020750) 37 NM_006502 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 4354 chr10 110858524 110858628 + 0 NA Intergenic L2c|LINE|L2 12328 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 27396 chr8 11808404 11808508 + 0 NA promoter-TSS (NM_001287751) promoter-TSS (NM_001287751) 39 NM_001287750 2222 Hs.593928 NM_004462 ENSG00000079459 FDFT1 DGPT|ERG9|SQS|SS farnesyl-diphosphate farnesyltransferase 1 protein-coding 2018 chr1 167671823 167671967 + 0 NA intron (NM_001322923, intron 1 of 5) intron (NM_001322923, intron 1 of 5) 41658 NM_052862 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 21239 chr4 22484478 22484582 + 0 NA intron (NM_145290, intron 1 of 18) AluSz|SINE|Alu 31524 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 12336 chr17 32998510 32998614 + 0 NA TTS (NM_001317226) TTS (NM_001317226) 5711 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 12675 chr17 50498247 50498270 + 0 NA Intergenic Intergenic -10126 NM_032133 84073 Hs.398196 NM_032133 ENSG00000136449 MYCBPAP AMAP-1|AMAP1 MYCBP associated protein protein-coding 2977 chr1 233904668 233904772 + 0 NA promoter-TSS (NM_173508) promoter-TSS (NM_173508) 8 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 16594 chr2 164991815 164991968 + 0 NA Intergenic Intergenic -36366 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 6 chr1 1000127 1000263 + 0 NA promoter-TSS (NM_021170) promoter-TSS (NM_021170) -23 NM_021170 57801 Hs.154029 NM_021170 ENSG00000188290 HES4 bHLHb42 hes family bHLH transcription factor 4 protein-coding 19214 chr3 16060564 16060668 + 0 NA Intergenic Intergenic -113706 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 30436 chrX 776676 776780 + 0 NA Intergenic Intergenic 152384 NM_006883 6473 Hs.105932 NM_000451 ENSG00000185960 SHOX GCFX|PHOG|SHOXY|SS short stature homeobox protein-coding 14754 chr19 52269442 52269567 + 0 NA promoter-TSS (NM_001010851) promoter-TSS (NM_001010851) -67 NM_001010851 90321 Hs.439662 NM_001010851 ENSG00000196214 ZNF766 - zinc finger protein 766 protein-coding 18938 chr22 40683199 40683303 + 0 NA TTS (NM_005297) TTS (NM_005297) 4073 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 30884 chrX 101348715 101348819 + 0 NA promoter-TSS (NM_001145951) promoter-TSS (NM_001145951) -47 NM_001145951 1678 Hs.447877 NM_004085 ENSG00000126953 TIMM8A DDP|DDP1|DFN1|MTS|TIM8 translocase of inner mitochondrial membrane 8 homolog A (yeast) protein-coding 30245 chr9 129803027 129803131 + 0 NA promoter-TSS (NM_001317893) promoter-TSS (NM_001317893) -64 NR_134027 27348 Hs.252682 NM_014506 ENSG00000136816 TOR1B DQ1 torsin family 1 member B protein-coding 29742 chr9 105415512 105415613 + 0 NA intron (NM_001330731, intron 15 of 15) intron (NM_001330731, intron 15 of 15) -32472 NM_001330739 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 15547 chr2 53970917 53971152 + 0 NA promoter-TSS (NM_001320587) promoter-TSS (NM_001320587) -69 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 8017 chr13 27362119 27362198 + 0 NA Intergenic Intergenic -62386 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 24116 chr6 17042884 17042988 + 0 NA Intergenic L1ME1|LINE|L1 -59322 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 10306 chr15 66293438 66293526 + 0 NA promoter-TSS (NM_001143688) promoter-TSS (NM_001143688) -93 NM_001323940 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 11285 chr16 47018310 47018414 + 0 NA Intergenic Intergenic -44648 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 10778 chr15 96357194 96357233 + 0 NA Intergenic CpG 23873 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 30346 chr9 135952053 135952186 + 0 NA intron (NM_016172, intron 3 of 9) intron (NM_016172, intron 3 of 9) 9261 NM_016172 10422 Hs.9194 NM_016172 ENSG00000130560 UBAC1 GBDR1|KPC2|UBADC1 UBA domain containing 1 protein-coding 25548 chr7 2232903 2233108 + 0 NA promoter-TSS (NM_003550) promoter-TSS (NM_003550) -57 NM_001304523 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 28185 chr8 91324357 91324461 + 0 NA intron (NM_001282356, intron 6 of 19) intron (NM_001282356, intron 6 of 19) 75121 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 5763 chr11 85077003 85077107 + 0 NA intron (NM_001142699, intron 6 of 27) L2c|LINE|L2 -153634 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 31028 chrX 121197632 121197823 + 0 NA Intergenic LTR25|LTR|ERV1 150119 NM_012084 2747 Hs.368538 NM_012084 ENSG00000182890 GLUD2 GDH2|GLUDP1 glutamate dehydrogenase 2 protein-coding 21910 chr4 152352728 152352832 + 0 NA 5' UTR (NM_018315, exon 1 of 11) 5' UTR (NM_018315, exon 1 of 11) 178 NM_018315 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 27552 chr8 24229487 24229603 + 0 NA Intergenic Intergenic -64495 NM_014265 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 16652 chr2 172008826 172008976 + 0 NA intron (NM_001322279, intron 1 of 9) MER44D|DNA|TcMar-Tigger 9004 NM_199227 254042 Hs.298250 NM_199227 ENSG00000172878 METAP1D MAP 1D|MAP1D|MetAP 1D|Metap1l methionyl aminopeptidase type 1D, mitochondrial protein-coding 5953 chr11 100863369 100863516 + 0 NA intron (NM_152432, intron 4 of 23) intron (NM_152432, intron 4 of 23) -128638 NM_032021 83935 Hs.44004 NM_032021 ENSG00000170647 TMEM133 AD031 transmembrane protein 133 protein-coding 18887 chr22 38145881 38145990 + 0 NA intron (NM_001199562, intron 2 of 15) AluJr|SINE|Alu -35266 NM_025045 80115 Hs.474822 NM_025045 ENSG00000128298 BAIAP2L2 - BAI1 associated protein 2 like 2 protein-coding 3053 chr1 238178042 238178146 + 0 NA Intergenic MER84-int|LTR|ERV1 -287172 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 9137 chr14 60981092 60981237 + 0 NA promoter-TSS (NM_020810) promoter-TSS (NM_020810) 50 NM_153811 145389 Hs.200738 NM_153811 ENSG00000139974 SLC38A6 NAT-1|SNAT6 solute carrier family 38 member 6 protein-coding 12778 chr17 58518051 58518156 + 0 NA promoter-TSS (NM_004687) promoter-TSS (NM_004687) -213 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 7841 chr12 124422712 124422816 + 0 NA intron (NM_001077261, intron 13 of 47) intron (NM_001077261, intron 13 of 47) -85522 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 13007 chr17 75459912 75460016 + 0 NA intron (NM_014738, intron 1 of 31) intron (NM_014738, intron 1 of 31) 3500 NM_014738 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 KIAA0195 transmembrane protein 94 protein-coding 25858 chr7 23465582 23465706 + 0 NA intron (NM_006547, intron 2 of 14) intron (NM_006547, intron 2 of 14) 4732 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 785 chr1 44721649 44721753 + 0 NA TTS (NR_002753) TTS (NR_002753) 200 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 6621 chr12 12725132 12725152 + 0 NA promoter-TSS (NM_001130415) promoter-TSS (NM_001130415) -775 NM_001130415 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 23382 chr5 141869760 141869864 + 0 NA promoter-TSS (NM_001278613) promoter-TSS (NM_001278613) -185 NM_001278613 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 16579 chr2 163775030 163775134 + 0 NA Intergenic Intergenic -39075 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 599 chr1 34763698 34763802 + 0 NA TTS (NM_153212) TTS (NM_153212) 4009 NM_153212 127534 Hs.351203 NM_153212 ENSG00000189433 GJB4 CX30.3|EKV gap junction protein beta 4 protein-coding 4574 chr10 125231610 125231759 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -70623 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 23475 chr5 148987637 148987796 + 0 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 74693 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 15237 chr2 27489773 27489958 + 0 NA promoter-TSS (NM_015662) promoter-TSS (NM_015662) -54 NM_015662 26160 Hs.127401 NM_015662 ENSG00000138002 IFT172 BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim intraflagellar transport 172 protein-coding 20726 chr3 178703701 178703851 + 0 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 145076 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 10757 chr15 94674301 94674390 + 0 NA Intergenic Intergenic -181018 NR_077061 440311 Hs.745156 NR_077061 ENSG00000260521 LOC440311 - glioma tumor suppressor candidate region gene 2 pseudogene pseudo 23639 chr5 160119550 160119701 + 0 NA promoter-TSS (NM_001267035) promoter-TSS (NM_001267035) -180 NM_001267035 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 21690 chr4 109560122 109560308 + 0 NA promoter-TSS (NM_017918) promoter-TSS (NM_017918) 16 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 3291 chr10 12271068 12271187 + 0 NA Intergenic Intergenic -74983 NM_001321647 11164 Hs.555956 NM_014142 ENSG00000165609 NUDT5 YSA1|YSA1H|YSAH1|hNUDT5 nudix hydrolase 5 protein-coding 26930 chr7 123535017 123535168 + 0 NA promoter-TSS (NM_178827) promoter-TSS (NM_178827) -428 NM_178827 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 13646 chr18 58541854 58541987 + 0 NA intron (NM_052947, intron 4 of 12) intron (NM_052947, intron 4 of 12) -58700 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 21456 chr4 74933008 74933112 + 0 NA promoter-TSS (NM_015393) promoter-TSS (NM_015393) -15 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 24220 chr6 26157859 26157983 + 0 NA promoter-TSS (NM_138720) promoter-TSS (NM_138720) -200 NM_021063 3017 Hs.591797 NM_021063 ENSG00000158373 HIST1H2BD H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6 histone cluster 1 H2B family member d protein-coding 25464 chr6 164408925 164409075 + 0 NA Intergenic Intergenic 413063 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 17026 chr2 209771727 209771773 + 0 NA promoter-TSS (NM_182587) promoter-TSS (NM_182587) -243 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN activator protein-coding 11536 chr16 68665670 68665774 + 0 NA intron (NM_001793, intron 2 of 15) intron (NM_001793, intron 2 of 15) 20886 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 2682 chr1 215409682 215409786 + 0 NA Intergenic Intergenic -157645 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 14301 chr19 19643636 19643786 + 0 NA promoter-TSS (NM_001288998) promoter-TSS (NM_001288998) -44 NM_001288999 51291 Hs.49427 NM_016573 ENSG00000089639 GMIP ARHGAP46 GEM interacting protein protein-coding 17031 chr2 210476697 210476846 + 0 NA promoter-TSS (NM_001122633) promoter-TSS (NM_001122633) -4 NM_006055 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 27377 chr8 10590305 10590409 + 0 NA Intergenic Intergenic 64750 NM_178857 94137 Hs.33538 NM_178857 ENSG00000183638 RP1L1 DCDC4B RP1 like 1 protein-coding 25645 chr7 7100504 7100680 + 0 NA Intergenic Intergenic -3806 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 11373 chr16 54426013 54426070 + 0 NA Intergenic Intergenic -55342 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 8077 chr13 32267953 32268057 + 0 NA intron (NM_023037, intron 55 of 60) intron (NM_023037, intron 55 of 60) 43949 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1-like protein-coding 18522 chr21 37339089 37339193 + 0 NA Intergenic Intergenic -26432 NM_001396 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 20740 chr3 179562804 179562953 + 0 NA promoter-TSS (NM_004301) promoter-TSS (NM_004301) -2 NM_004301 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 106 chr1 7783959 7784100 + 0 NA promoter-TSS (NM_001289861) promoter-TSS (NM_001289861) -400 NM_001289862 8863 Hs.162200 NM_016831 ENSG00000049246 PER3 FASPS3|GIG13 period circadian clock 3 protein-coding 8158 chr13 40789441 40789559 + 0 NA promoter-TSS (NM_014252) promoter-TSS (NM_014252) 89 NM_014252 10166 Hs.646645 NM_014252 ENSG00000102743 SLC25A15 D13S327|HHH|ORC1|ORNT1 solute carrier family 25 member 15 protein-coding 17719 chr20 19757904 19758040 + 0 NA Intergenic CpG -128549 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 21203 chr4 15681432 15681609 + 0 NA promoter-TSS (NM_001145191) promoter-TSS (NM_001145191) -209 NM_001145191 285550 Hs.399980 NM_001145191 ENSG00000237765 FAM200B - family with sequence similarity 200 member B protein-coding 19053 chr22 50282525 50282695 + 0 NA intron (NM_012401, intron 18 of 36) CpG-19349 -12217 NM_002751 5600 Hs.57732 NM_002751 ENSG00000185386 MAPK11 P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta mitogen-activated protein kinase 11 protein-coding 203 chr1 15218631 15218735 + 0 NA intron (NM_001319665, intron 3 of 3) MER66C|LTR|ERV1 -28589 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead associated phosphopeptide binding domain 1 protein-coding 17047 chr2 212912871 212912975 + 0 NA Intergenic Intergenic -13334 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 22531 chr5 54416170 54416280 + 0 NA Intergenic MIR|SINE|MIR -39376 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 6114 chr11 114295087 114295191 + 0 NA promoter-TSS (NM_006169) promoter-TSS (NM_006169) -674 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 13584 chr18 51197881 51197963 + 0 NA promoter-TSS (NM_016626) promoter-TSS (NM_016626) -241 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 21694 chr4 109967936 109968040 + 0 NA intron (NM_001963, intron 10 of 23) Tigger3c|DNA|TcMar-Tigger 55104 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 1023 chr1 64343537 64343641 + 0 NA Intergenic Intergenic -127204 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 5705 chr11 77819469 77819573 + 0 NA intron (NM_016578, intron 1 of 15) intron (NM_016578, intron 1 of 15) 1313 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 9988 chr15 43254128 43254178 + 0 NA intron (NM_004245, intron 3 of 11) L2b|LINE|L2 12704 NM_201631 9333 Hs.129719 NM_004245 ENSG00000104055 TGM5 PSS2|TGASE5|TGASEX|TGM6|TGMX|TGX transglutaminase 5 protein-coding 86 chr1 6554440 6554594 + 0 NA promoter-TSS (NM_024654) promoter-TSS (NM_024654) 81 NM_024654 79707 Hs.59425 NM_024654 ENSG00000162408 NOL9 Grc3|NET6 nucleolar protein 9 protein-coding 19294 chr3 29694944 29695048 + 0 NA intron (NM_001003793, intron 4 of 14) intron (NM_001003793, intron 4 of 14) 239160 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 9860 chr15 34722053 34722193 + 0 NA Intergenic Intergenic 32458 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 1158 chr1 79100544 79100648 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -93786 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 21614 chr4 99458991 99459095 + 0 NA Intergenic Intergenic -23533 NM_000673 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 17040 chr2 212424235 212424339 + 0 NA intron (NM_001042599, intron 1 of 26) L2b|LINE|L2 2073 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 2335 chr1 199778356 199778497 + 0 NA Intergenic Intergenic -249176 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 23995 chr6 8180483 8180587 + 0 NA Intergenic Intergenic -77940 NM_004280 9521 Hs.602353 NM_004280 ENSG00000124802 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 11304 chr16 48385454 48385521 + 0 NA promoter-TSS (NM_003031) promoter-TSS (NM_003031) -169 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 14228 chr19 16883653 16883748 + 0 NA Intergenic Intergenic -5160 NM_003950 9002 Hs.137574 NM_003950 ENSG00000127533 F2RL3 PAR4 F2R like thrombin/trypsin receptor 3 protein-coding 29965 chr9 115691178 115691282 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR 53009 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 6516 chr12 6430694 6430798 + 0 NA Intergenic L1ME3G|LINE|L1 -14139 NM_001242 939 Hs.355307 NM_001242 ENSG00000139193 CD27 S152|S152. LPFS2|T14|TNFRSF7|Tp55 CD27 molecule protein-coding 6304 chr11 126366486 126366590 + 0 NA intron (NM_006278, intron 1 of 10) intron (NM_006278, intron 1 of 10) 10644 NM_006278 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 26598 chr7 92904476 92904580 + 0 NA intron (NR_110087, intron 2 of 2) AmnSINE1|SINE|5S-Deu-L2 -67901 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 18180 chr20 50321354 50321458 + 0 NA promoter-TSS (NR_109950) promoter-TSS (NR_109950) -64 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 11600 chr16 71895392 71895437 + 0 NA promoter-TSS (NM_001270975) promoter-TSS (NM_001270975) -79 NM_001270979 9798 Hs.232194 NM_014761 ENSG00000182149 IST1 OLC1 IST1, ESCRT-III associated factor protein-coding 27251 chr7 153518712 153518812 + 0 NA Intergenic Intergenic -106528 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 24883 chr6 85643247 85643351 + 0 NA promoter-TSS (NM_001253771) promoter-TSS (NM_001253771) 26 NM_001159677 10492 Hs.571177 NM_006372 ENSG00000135316 SYNCRIP GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q synaptotagmin binding cytoplasmic RNA interacting protein protein-coding 19982 chr3 119235270 119235374 + 0 NA intron (NM_212543, intron 2 of 8) intron (NM_212543, intron 2 of 8) 5583 NM_003778 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 11545 chr16 68802409 68802515 + 0 NA intron (NM_004360, intron 3 of 15) intron (NM_004360, intron 3 of 15) -41144 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 1709 chr1 151327657 151327810 + 0 NA promoter-TSS (NM_001330721) promoter-TSS (NM_001330721) -18 NM_001330721 5298 Hs.632465 NM_002651 ENSG00000143393 PI4KB NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB phosphatidylinositol 4-kinase beta protein-coding 4896 chr11 14765297 14765401 + 0 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 121626 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 18162 chr20 49615622 49615796 + 0 NA Intergenic Intergenic -47539 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 27373 chr8 10054548 10054672 + 0 NA exon (NM_001135670, exon 1 of 5) exon (NM_001135670, exon 1 of 5) 341 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 17721 chr20 19784715 19784857 + 0 NA Intergenic Intergenic -101735 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 7949 chr13 21176584 21176712 + 0 NA promoter-TSS (NM_145061) promoter-TSS (NM_145061) -46 NM_145061 221150 Hs.88523 NM_145061 ENSG00000165480 SKA3 C13orf3|RAMA1 spindle and kinetochore associated complex subunit 3 protein-coding 16396 chr2 141021103 141021207 + 0 NA intron (NM_018557, intron 11 of 90) intron (NM_018557, intron 11 of 90) -434470 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 6355 chr11 130037162 130037322 + 0 NA Intergenic Intergenic -32579 NM_001642 334 Hs.370247 NM_001642 ENSG00000084234 APLP2 APLP-2|APPH|APPL2|CDEBP amyloid beta precursor like protein 2 protein-coding 8124 chr13 38308805 38308972 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -40883 NM_016617 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20 ubiquitin fold modifier 1 protein-coding 268 chr1 18618668 18618823 + 0 NA Intergenic L1ME4a|LINE|L1 -12261 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 7281 chr12 75977991 75978143 + 0 NA Intergenic Intergenic 53709 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 22920 chr5 96614271 96614375 + 0 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -47714 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 22006 chr4 169899448 169899479 + 0 NA Intergenic Intergenic 76439 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LOC100506085 - uncharacterized LOC100506085 ncRNA 21291 chr4 38180585 38180689 + 0 NA Intergenic Intergenic 60683 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 596 chr1 34755326 34755480 + 0 NA intron (NM_005268, intron 1 of 1) intron (NM_005268, intron 1 of 1) 356 NM_005268 2709 Hs.198249 NM_005268 ENSG00000189280 GJB5 CX31.1 gap junction protein beta 5 protein-coding 29196 chr9 71783381 71783485 + 0 NA Intergenic Intergenic -14549 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 19863 chr3 111610730 111610798 + 0 NA intron (NR_134917, intron 8 of 14) intron (NR_134917, intron 8 of 14) -15429 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 19718 chr3 97883122 97883132 + 0 NA intron (NM_153605, intron 7 of 21) L2b|LINE|L2 61087 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 12209 chr17 20908657 20908732 + 0 NA Intergenic CpG -12554 NM_001004306 339184 Hs.674830 NM_001004306 ENSG00000205212 CCDC144NL - coiled-coil domain containing 144 family, N-terminal like protein-coding 19101 chr3 5023450 5023536 + 0 NA Intergenic Intergenic -43532 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 2090 chr1 174871979 174872083 + 0 NA intron (NM_001243765, intron 2 of 8) intron (NM_001243765, intron 2 of 8) -2355 NM_001243763 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 27769 chr8 47381626 47381706 + 0 NA intron (NR_104581, intron 5 of 16) AmnSINE1|SINE|5S-Deu-L2 120788 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 16241 chr2 121525195 121525346 + 0 NA intron (NM_001142274, intron 6 of 37) intron (NM_001142274, intron 6 of 37) -5610 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 3495 chr10 29254752 29254856 + 0 NA Intergenic Intergenic -34257 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 25130 chr6 127420653 127420757 + 0 NA Intergenic Intergenic 38685 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 11453 chr16 61892649 61892753 + 0 NA intron (NM_001796, intron 3 of 11) intron (NM_001796, intron 3 of 11) 144134 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 6515 chr12 6384038 6384149 + 0 NA promoter-TSS (NM_002342) promoter-TSS (NM_002342) 60 NM_002342 4055 Hs.1116 NM_002342 ENSG00000111321 LTBR CD18|D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 lymphotoxin beta receptor protein-coding 6237 chr11 122580655 122580759 + 0 NA Intergenic (GCCTCT)n|Simple_repeat|Simple_repeat -74983 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 26701 chr7 100341335 100341484 + 0 NA TTS (NR_103720) TTS (NR_103720) -5102 NR_003613 5379 Hs.634244 NM_005394 PMS2P1 PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2 PMS1 homolog 2, mismatch repair system component pseudogene 1 pseudo 14111 chr19 11346388 11346390 + 0 NA promoter-TSS (NM_001321114) promoter-TSS (NM_001321114) -84 NM_033408 374882 Hs.8036 NM_033408 ENSG00000105518 TMEM205 UNQ501 transmembrane protein 205 protein-coding 11446 chr16 58733792 58733931 + 0 NA intron (NM_002080, intron 1 of 9) CpG 496 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 7477 chr12 96907140 96907315 + 0 NA promoter-TSS (NM_001135177) promoter-TSS (NM_001135177) 4 NM_152905 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 494 chr1 29182011 29182070 + 0 NA promoter-TSS (NM_005626) promoter-TSS (NM_005626) 85 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 9345 chr14 73458596 73458717 + 0 NA promoter-TSS (NM_001320114) promoter-TSS (NM_001320114) -76 NM_001320114 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB, endocytic adaptor protein protein-coding 10024 chr15 45445448 45445552 + 0 NA Intergenic Intergenic 12450 NR_030599 100126311 NR_030599 ENSG00000166920 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 2235 chr1 184954424 184954552 + 0 NA intron (NM_052966, intron 1 of 13) intron (NM_052966, intron 1 of 13) 20098 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 FAM129A C1orf24|GIG39|NIBAN family with sequence similarity 129 member A protein-coding 28371 chr8 103878270 103878374 + 0 NA intron (NM_014677, intron 1 of 21) L1PB1|LINE|L1 59134 NM_001282881 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 25002 chr6 109691164 109691269 + 0 NA promoter-TSS (NM_014845) promoter-TSS (NM_014845) -4 NM_001329603 221264 Hs.205144 NM_145025 ENSG00000155085 AK9 AK 9|AKD1|AKD2|C6orf199|C6orf224|dJ70A9.1 adenylate kinase 9 protein-coding 8613 chr13 110561828 110561977 + 0 NA promoter-TSS (NM_017817) promoter-TSS (NM_017817) -165 NM_017817 55647 Hs.743563 NM_017817 ENSG00000139832 RAB20 - RAB20, member RAS oncogene family protein-coding 23221 chr5 132737573 132737677 + 0 NA promoter-TSS (NM_001300791) promoter-TSS (NM_001300791) -47 NM_007054 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 9554 chr14 91114248 91114325 + 0 NA promoter-TSS (NM_001102367) promoter-TSS (NM_001102367) 273 NM_001286472 80017 Hs.309849 NM_024952 ENSG00000133943 C14orf159 - chromosome 14 open reading frame 159 protein-coding 448 chr1 27234341 27234464 + 0 NA promoter-TSS (NM_001276252) promoter-TSS (NM_001276252) -114 NM_015023 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 13065 chr17 78159883 78160065 + 0 NA intron (NM_001163075, intron 2 of 4) L1MB5|LINE|L1 -8571 NM_004710 9144 Hs.464210 NM_004710 ENSG00000108639 SYNGR2 - synaptogyrin 2 protein-coding 17720 chr20 19767263 19767367 + 0 NA Intergenic MER39B|LTR|ERV1 -119206 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 15929 chr2 86512158 86512268 + 0 NA intron (NR_036454, intron 1 of 3) MLT1A1|LTR|ERVL-MaLR 51284 NM_001005753 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 15796 chr2 72828098 72828196 + 0 NA Intergenic Intergenic -2105 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2 exocyst complex component 6B protein-coding 30793 chrX 68828870 68828997 + 0 NA promoter-TSS (NM_004429) promoter-TSS (NM_004429) -64 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 10294 chr15 65246495 65246599 + 0 NA Intergenic Intergenic -35045 NM_003613 8483 Hs.442180 NM_003613 ENSG00000138615 CILP CILP-1|HsT18872 cartilage intermediate layer protein protein-coding 28330 chr8 101205193 101205322 + 0 NA intron (NM_001267708, intron 1 of 5) CpG 475 NM_001042510 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 9869 chr15 35728320 35728443 + 0 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -182178 NM_080650 89978 Hs.107196 NM_080650 ENSG00000134146 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 12134 chr17 16215571 16215724 + 0 NA promoter-TSS (NM_006311) promoter-TSS (NM_006311) -87 NM_006311 9611 Hs.462323 NM_006311 ENSG00000141027 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 28826 chr8 143977034 143977047 + 0 NA promoter-TSS (NM_000445) promoter-TSS (NM_000445) -295 NM_000445 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 10436 chr15 74240318 74240422 + 0 NA intron (NM_025055, intron 1 of 18) intron (NM_025055, intron 1 of 18) 4081 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 4647 chr10 133373332 133373500 + 0 NA promoter-TSS (NM_004092) promoter-TSS (NM_004092) -12 NM_004092 1892 Hs.76394 NM_004092 ENSG00000127884 ECHS1 ECHS1D|SCEH enoyl-CoA hydratase, short chain 1 protein-coding 25539 chr7 1459602 1459706 + 0 NA promoter-TSS (NM_182924) promoter-TSS (NM_182924) -181 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 24025 chr6 10633393 10633539 + 0 NA Intergenic Intergenic 47706 NM_145655 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) protein-coding 8757 chr14 24232522 24232643 + 0 NA promoter-TSS (NM_006156) promoter-TSS (NM_006156) 160 NM_001002000 51292 Hs.368855 NM_016576 ENSG00000100938 GMPR2 GMPR 2 guanosine monophosphate reductase 2 protein-coding 30806 chrX 70289907 70290060 + 0 NA promoter-TSS (NM_016484) promoter-TSS (NM_016484) -35 NM_016484 51248 Hs.11042 NM_016484 ENSG00000120509 PDZD11 AIPP1|PDZK11|PISP PDZ domain containing 11 protein-coding 29395 chr9 83980259 83980409 + 0 NA promoter-TSS (NM_001318187) promoter-TSS (NM_001318187) -63 NM_001318187 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 713 chr1 40979772 40979817 + 0 NA non-coding (NR_125440, exon 1 of 18) non-coding (NR_125440, exon 1 of 18) 495 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|IMD24 CTP synthase 1 protein-coding 24808 chr6 77292664 77292755 + 0 NA Intergenic Intergenic 171313 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 23198 chr5 132103380 132103532 + 0 NA Intergenic Intergenic 29664 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 GMCSF colony stimulating factor 2 protein-coding 19377 chr3 39125991 39126079 + 0 NA intron (NM_145755, intron 11 of 28) L2c|LINE|L2 -12171 NR_106880 102466743 NR_106880 ENSG00000168026 MIR6822 hsa-mir-6822 microRNA 6822 ncRNA 12878 chr17 66636253 66636344 + 0 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -150774 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 11658 chr16 75517351 75517517 + 0 NA Intergenic CpG 17736 NM_024533 23563 Hs.745424 NM_012126 ENSG00000135702 CHST5 I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST carbohydrate sulfotransferase 5 protein-coding 3557 chr10 33365904 33366052 + 0 NA Intergenic LTR26|LTR|ERV1 -31073 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 12467 chr17 40547628 40547782 + 0 NA Intergenic Intergenic 12689 NM_001301718 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 10794 chr15 99425235 99425378 + 0 NA Intergenic Intergenic -140622 NM_001130927 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 1679 chr1 150477478 150477627 + 0 NA TTS (NM_001297674) TTS (NM_001297674) -9812 NM_025150 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 28469 chr8 117520570 117520720 + 0 NA promoter-TSS (NM_001282986) promoter-TSS (NM_001282986) -68 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 23337 chr5 140107947 140108037 + 0 NA promoter-TSS (NR_102741) promoter-TSS (NR_102741) 20 NR_102741 100505636 Hs.438871 NR_102739 ENSG00000245146 LINC01024 MA-linc1 long intergenic non-protein coding RNA 1024 ncRNA 20909 chr3 189316357 189316487 + 0 NA intron (NM_198485, intron 5 of 5) intron (NM_198485, intron 5 of 5) -75828 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 23588 chr5 155139802 155139906 + 0 NA Intergenic Intergenic 126099 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 4215 chr10 100286648 100286729 + 0 NA promoter-TSS (NM_001001342) promoter-TSS (NM_001001342) 24 NM_001282436 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 25801 chr7 20296571 20296715 + 0 NA promoter-TSS (NR_110117) promoter-TSS (NR_110117) -65 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 6845 chr12 32755115 32755219 + 0 NA exon (NM_001040436, exon 1 of 5) exon (NM_001040436, exon 1 of 5) 786 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 1262 chr1 88684067 88684171 + 0 NA promoter-TSS (NM_001320708) promoter-TSS (NM_001320708) -25 NM_001320709 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 18497 chr21 33947928 33948032 + 0 NA intron (NR_134558, intron 2 of 2) intron (NR_134558, intron 2 of 2) 16766 NR_134558 100506334 Hs.532855 NM_207472 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 8952 chr14 49634420 49634524 + 0 NA exon (NM_001083908, exon 1 of 2) exon (NM_001083908, exon 1 of 2) 758 NM_018139 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 26715 chr7 100865683 100865715 + 0 NA TTS (NM_001267814) TTS (NM_001267814) -1629 NM_003302 7205 Hs.534360 NM_003302 ENSG00000087077 TRIP6 OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1 thyroid hormone receptor interactor 6 protein-coding 1527 chr1 112705243 112705378 + 0 NA intron (NM_175744, intron 1 of 5) intron (NM_175744, intron 1 of 5) 1746 NM_001042679 389 Hs.502659 NM_175744 ENSG00000155366 RHOC ARH9|ARHC|H9|RHOH9 ras homolog family member C protein-coding 28235 chr8 95198288 95198423 + 0 NA Intergenic Intergenic 18019 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 22585 chr5 58582883 58583069 + 0 NA promoter-TSS (NM_138453) promoter-TSS (NM_138453) -68 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 2162 chr1 181044629 181044760 + 0 NA intron (NM_001310213, intron 3 of 6) MER115|DNA|hAT-Tip100 11269 NM_001194999 3140 Hs.13500 NM_001531 ENSG00000153029 MR1 HLALS major histocompatibility complex, class I-related protein-coding 12042 chr17 7450814 7450923 + 0 NA intron (NM_000747, intron 7 of 10) intron (NM_000747, intron 7 of 10) 5781 NM_000747 1140 Hs.330386 NM_000747 ENSG00000170175 CHRNB1 ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS cholinergic receptor nicotinic beta 1 subunit protein-coding 10179 chr15 58473820 58473924 + 0 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 24863 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 20028 chr3 122416055 122416159 + 0 NA promoter-TSS (NM_019069) promoter-TSS (NM_019069) -72 NM_019069 54554 Hs.567513 NM_019069 ENSG00000196981 WDR5B - WD repeat domain 5B protein-coding 4308 chr10 104445523 104445557 + 0 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 34735 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LOC101927523 - uncharacterized LOC101927523 ncRNA 4707 chr11 3422542 3422605 + 0 NA Intergenic CpG -30658 NR_044999 10821 Hs.637689 NR_044999 ENSG00000189398 OR7E12P HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021 olfactory receptor family 7 subfamily E member 12 pseudogene pseudo 6552 chr12 7108494 7108648 + 0 NA intron (NR_026947, intron 1 of 11) intron (NR_026947, intron 1 of 11) 263 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 6927 chr12 46372731 46372860 + 0 NA promoter-TSS (NM_018976) promoter-TSS (NM_018976) 67 NM_018976 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 15939 chr2 88351036 88351140 + 0 NA Intergenic CpG 101447 NM_001135649 344167 Hs.716722 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 15726 chr2 68907675 68907766 + 0 NA Intergenic Intergenic -36203 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 631 chr1 36373871 36373975 + 0 NA intron (NM_032017, intron 1 of 11) intron (NM_032017, intron 1 of 11) 12004 NM_001282547 83931 Hs.471768 NM_032017 ENSG00000196182 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 12667 chr17 50345911 50346015 + 0 NA promoter-TSS (NM_022167) promoter-TSS (NM_022167) -69 NR_110010 64132 Hs.463416 NM_022167 ENSG00000015532 XYLT2 PXYLT2|SOS|XT-II|XT2|xylT-II xylosyltransferase 2 protein-coding 17169 chr2 223725671 223725821 + 0 NA Intergenic Intergenic 111856 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 sigma 3 subunit protein-coding 1422 chr1 101338927 101339031 + 0 NA intron (NR_126402, intron 1 of 4) LTR8|LTR|ERV1 15142 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 31013 chrX 119871674 119871878 + 0 NA promoter-TSS (NM_006978) promoter-TSS (NM_006978) 5 NM_004541 4694 Hs.534168 NM_004541 ENSG00000125356 NDUFA1 CI-MWFE|MWFE|ZNF183 NADH:ubiquinone oxidoreductase subunit A1 protein-coding 13754 chr18 70286421 70286525 + 0 NA Intergenic Intergenic -2428 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 4713 chr11 3885960 3886064 + 0 NA intron (NM_001277961, intron 1 of 11) intron (NM_001277961, intron 1 of 11) 29950 NR_039835 100616453 NR_039835 ENSG00000167323 MIR4687 - microRNA 4687 ncRNA 19250 chr3 23095171 23095278 + 0 NA Intergenic Intergenic 107354 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 14242 chr19 17317518 17317624 + 0 NA intron (NM_024050, intron 4 of 4) AluJr|SINE|Alu 8043 NM_024050 79016 Hs.466154 NM_024050 ENSG00000130311 DDA1 C19orf58|PCIA1 DET1 and DDB1 associated 1 protein-coding 9071 chr14 55803205 55803309 + 0 NA Intergenic Intergenic -6583 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 22232 chr5 13567841 13567976 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 376572 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 26613 chr7 94004310 94004475 + 0 NA promoter-TSS (NR_133909) promoter-TSS (NR_133909) -10 NM_005868 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 5262 chr11 56932958 56933101 + 0 NA Intergenic Intergenic -55885 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 8367 chr13 75716970 75717098 + 0 NA intron (NM_001306080, intron 2 of 30) intron (NM_001306080, intron 2 of 30) -43387 NM_001330583 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 17986 chr20 38617118 38617222 + 0 NA intron (NM_001164431, intron 1 of 14) intron (NM_001164431, intron 1 of 14) 15236 NM_001164431 343578 Hs.451997 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 15879 chr2 84314918 84315058 + 0 NA Intergenic Intergenic 24306 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 18142 chr20 47927591 47927722 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -55570 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 25188 chr6 135498439 135498543 + 0 NA promoter-TSS (NM_001134830) promoter-TSS (NM_001134830) 690 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 29826 chr9 109238763 109238867 + 0 NA TTS (NM_018424) TTS (NM_018424) -71524 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 16276 chr2 127398342 127398446 + 0 NA Intergenic Intergenic -20026 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 5958 chr11 101721402 101721534 + 0 NA Intergenic Intergenic -137540 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 7560 chr12 104219449 104219553 + 0 NA intron (NM_001093771, intron 1 of 16) intron (NM_001093771, intron 1 of 16) 3722 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 24995 chr6 108848710 108848814 + 0 NA intron (NM_032131, intron 1 of 17) CpG 346 NM_032131 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 bA787I22.1 armadillo repeat containing 2 protein-coding 9814 chr15 30991726 30991793 + 0 NA promoter-TSS (NM_017762) promoter-TSS (NM_017762) -155 NM_017762 54893 Hs.30141 NM_017762 ENSG00000166912 MTMR10 - myotubularin related protein 10 protein-coding 12730 chr17 56682135 56682207 + 0 NA Intergenic L3|LINE|CR1 88472 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 11961 chr17 4555399 4555545 + 0 NA promoter-TSS (NM_001105538) promoter-TSS (NM_001105538) -86 NM_001105538 10514 Hs.22824 NM_014520 ENSG00000132382 MYBBP1A P160|PAP2 MYB binding protein 1a protein-coding 21522 chr4 83212570 83212652 + 0 NA Intergenic Intergenic 72303 NM_015697 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 5583 chr11 68460516 68460742 + 0 NA promoter-TSS (NM_001164160) promoter-TSS (NM_001164160) -89 NM_001164163 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 22512 chr5 52988010 52988061 + 0 NA Intergenic Intergenic -1291 NM_002203 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 22228 chr5 11251379 11251529 + 0 NA intron (NR_109988, intron 7 of 21) MER119|DNA|hAT-Charlie 337463 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 12337 chr17 33112962 33113066 + 0 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 120163 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 27624 chr8 28890140 28890275 + 0 NA promoter-TSS (NM_001135726) promoter-TSS (NM_001135726) -26 NM_018250 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 75 chr1 6205998 6206188 + 0 NA promoter-TSS (NR_125997) promoter-TSS (NR_125997) -36 NM_207396 388591 Hs.716549 NM_173795 ENSG00000158286 RNF207 C1orf188 ring finger protein 207 protein-coding 28002 chr8 70608362 70608376 + 0 NA promoter-TSS (NM_001317805) promoter-TSS (NM_001317805) 90 NM_014294 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 7642 chr12 110048463 110048624 + 0 NA intron (NM_207435, intron 4 of 4) CpG 19152 NM_207435 400073 Hs.44817 NM_207435 ENSG00000174456 C12orf76 - chromosome 12 open reading frame 76 protein-coding 2588 chr1 210251278 210251422 + 0 NA Intergenic Intergenic -17229 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 22563 chr5 56952082 56952220 + 0 NA promoter-TSS (NM_001297598) promoter-TSS (NM_001297598) -21 NM_152622 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 1163 chr1 80054293 80054397 + 0 NA Intergenic LTR18A|LTR|ERVL -481410 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 8163 chr13 41132826 41132930 + 0 NA promoter-TSS (NM_152903) promoter-TSS (NM_152903) -50 NR_120423 101929140 Hs.663088 NR_120423 ENSG00000278390 LOC101929140 - uncharacterized LOC101929140 ncRNA 27120 chr7 140672838 140672884 + 0 NA promoter-TSS (NM_052853) promoter-TSS (NM_052853) -292 NM_052853 90956 Hs.744886 NM_052853 ENSG00000133597 ADCK2 AARF aarF domain containing kinase 2 protein-coding 21625 chr4 100348611 100348715 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger 46584 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 11150 chr16 24493972 24494207 + 0 NA Intergenic Intergenic -45498 NM_006910 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 16646 chr2 171391129 171391216 + 0 NA intron (NR_135568, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 42937 NM_001321162 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 4518 chr10 121627944 121628038 + 0 NA Intergenic Intergenic -29533 NR_073009 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 27940 chr8 63219510 63219649 + 0 NA Intergenic Intergenic 50576 NM_001277818 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 13713 chr18 63604837 63604941 + 0 NA Intergenic LTR78B|LTR|ERV1 17589 NM_012397 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 3118 chr1 244652754 244652984 + 0 NA promoter-TSS (NM_001297746) promoter-TSS (NM_001297746) -179 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 14360 chr19 34677623 34677727 + 0 NA promoter-TSS (NR_027620) promoter-TSS (NR_027620) 36 NM_001289184 55900 Hs.436350 NM_018443 ENSG00000089335 ZNF302 HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 zinc finger protein 302 protein-coding 13248 chr18 8704842 8704946 + 0 NA intron (NR_120598, intron 1 of 1) CpG 2727 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 (non-protein coding) ncRNA 9743 chr14 104826489 104826571 + 0 NA Intergenic CpG 5329 NR_024396 196872 Hs.352220 NR_024396 ENSG00000258701 LINC00638 - long intergenic non-protein coding RNA 638 ncRNA 24980 chr6 107813678 107813831 + 0 NA intron (NM_198081, intron 1 of 7) MLT1H1|LTR|ERVL-MaLR 10563 NM_001286408 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 sex comb on midleg-like 4 (Drosophila) protein-coding 6313 chr11 128031687 128031839 + 0 NA Intergenic Intergenic 490547 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 20956 chr3 190566493 190566716 + 0 NA intron (NM_001167931, intron 3 of 11) intron (NM_001167931, intron 3 of 11) 52553 NM_001167931 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 24826 chr6 79631149 79631253 + 0 NA promoter-TSS (NM_031469) promoter-TSS (NM_031469) 96 NM_031469 83699 Hs.302772 NM_031469 ENSG00000198478 SH3BGRL2 - SH3 domain binding glutamate rich protein like 2 protein-coding 30696 chrX 48898155 48898277 + 0 NA promoter-TSS (NM_001167947) promoter-TSS (NM_001167947) -40 NM_005710 10084 Hs.534384 NM_005710 ENSG00000102103 PQBP1 MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS polyglutamine binding protein 1 protein-coding 27427 chr8 13366895 13366999 + 0 NA intron (NM_024767, intron 4 of 4) intron (NM_024767, intron 4 of 4) -90399 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 16809 chr2 189661200 189661364 + 0 NA promoter-TSS (NM_019048) promoter-TSS (NM_019048) -117 NM_019048 54529 Hs.101364 NM_019048 ENSG00000138381 ASNSD1 NBLA00058|NS3TP1 asparagine synthetase domain containing 1 protein-coding 146 chr1 9950500 9950604 + 0 NA intron (NM_022787, intron 1 of 4) intron (NM_022787, intron 1 of 4) 7124 NM_022787 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 7214 chr12 63845867 63845971 + 0 NA intron (NM_020762, intron 1 of 21) intron (NM_020762, intron 1 of 21) 1166 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 9406 chr14 76203536 76203640 + 0 NA non-coding (NR_110314, exon 10 of 10) non-coding (NR_110314, exon 10 of 10) 49234 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 528 chr1 31575607 31575733 + 0 NA promoter-TSS (NM_001204414) promoter-TSS (NM_001204414) -815 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 8700 chr14 22589356 22589460 + 0 NA promoter-TSS (NM_001344) promoter-TSS (NM_001344) -171 NM_001344 1603 Hs.82890 NM_001344 ENSG00000129562 DAD1 OST2 defender against cell death 1 protein-coding 19987 chr3 119468858 119468975 + 0 NA promoter-TSS (NM_152305) promoter-TSS (NM_152305) -22 NM_152305 56983 Hs.231750 NM_152305 ENSG00000163389 POGLUT1 C3orf9|CLP46|KDELCL1|KTELC1|LGMD2Z|MDS010|MDSRP|Rumi|hCLP46 protein O-glucosyltransferase 1 protein-coding 17472 chr20 2768463 2768605 + 0 NA Intergenic Intergenic 32112 NM_019609 56265 Hs.659346 NM_019609 ENSG00000088882 CPXM1 CPX1|CPXM carboxypeptidase X, M14 family member 1 protein-coding 13208 chr18 2302678 2302782 + 0 NA Intergenic Intergenic 268773 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 14382 chr19 35757975 35758123 + 0 NA promoter-TSS (NM_001039887) promoter-TSS (NM_001039887) -94 NM_001039887 148137 Hs.527982 NM_144692 ENSG00000167595 PROSER3 C19orf55 proline and serine rich 3 protein-coding 21096 chr4 474203 474377 + 0 NA promoter-TSS (NR_002451) promoter-TSS (NR_002451) -81 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 17017 chr2 209369051 209369221 + 0 NA Intergenic A-rich|Low_complexity|Low_complexity -54911 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 7803 chr12 122464436 122464586 + 0 NA Intergenic Intergenic 36562 NM_017612 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 8728 chr14 23286209 23286338 + 0 NA promoter-TSS (NM_020834) promoter-TSS (NM_020834) -173 NM_020834 57594 Hs.632332 NM_020834 ENSG00000215271 HOMEZ KIAA1443 homeobox and leucine zipper encoding protein-coding 7249 chr12 68676365 68676517 + 0 NA intron (NR_038930, intron 2 of 2) AluJb|SINE|Alu 10418 NR_038930 100507250 Hs.600731 NR_038930 ENSG00000247363 LOC100507250 - uncharacterized LOC100507250 ncRNA 13865 chr19 1490919 1491053 + 0 NA promoter-TSS (NM_017573) promoter-TSS (NM_017573) -19 NM_138393 92840 Hs.76277 NM_138393 ENSG00000115255 REEP6 C19orf32|DP1L1|REEP6.1|REEP6.2|TB2L1|Yip2f receptor accessory protein 6 protein-coding 15919 chr2 85912526 85912630 + 0 NA Intergenic MER21C|LTR|ERVL 23298 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 20707 chr3 177377329 177377447 + 0 NA Intergenic Intergenic -64533 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 15749 chr2 69756173 69756257 + 0 NA intron (NM_001320702, intron 1 of 12) intron (NM_001320702, intron 1 of 12) 14241 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 24948 chr6 100228997 100229128 + 0 NA Intergenic CpG 234613 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 21704 chr4 111781699 111781803 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -363646 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 C4orf32 - chromosome 4 open reading frame 32 protein-coding 18368 chr20 61166412 61166516 + 0 NA Intergenic Intergenic -85962 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 5936 chr11 97573874 97574018 + 0 NA Intergenic MER11B|LTR|ERVK 1065521 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LOC105369443 - uncharacterized LOC105369443 ncRNA 28144 chr8 86508652 86508811 + 0 NA promoter-TSS (NM_001286707) promoter-TSS (NM_001286707) 49 NM_001286707 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 10361 chr15 69557427 69557597 + 0 NA Intergenic Intergenic -4208 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 20692 chr3 175748302 175748460 + 0 NA intron (NM_207015, intron 12 of 13) intron (NM_207015, intron 12 of 13) 27952 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 27649 chr8 30703061 30703165 + 0 NA exon (NM_001195103, exon 5 of 12) exon (NM_001195103, exon 5 of 12) 24856 NM_001195104 2936 Hs.271510 NM_000637 ENSG00000104687 GSR HEL-75|HEL-S-122m glutathione-disulfide reductase protein-coding 23037 chr5 113426132 113426178 + 0 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 8876 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 12011 chr17 6640921 6641065 + 0 NA promoter-TSS (NM_014804) promoter-TSS (NM_014804) -66 NM_014804 9851 Hs.28070 NM_014804 ENSG00000198920 KIAA0753 MNR|OFD15|OFIP KIAA0753 protein-coding 24793 chr6 73580434 73580572 + 0 NA Intergenic Intergenic -59471 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 16730 chr2 178072743 178072869 + 0 NA promoter-TSS (NM_016953) promoter-TSS (NM_016953) -51 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 11852 chr16 89657718 89657751 + 0 NA promoter-TSS (NM_001083314) promoter-TSS (NM_001083314) -10 NM_153025 124045 Hs.655171 NM_153025 ENSG00000167523 SPATA33 C16orf55 spermatogenesis associated 33 protein-coding 9695 chr14 102087053 102087157 + 0 NA promoter-TSS (NM_005348) promoter-TSS (NM_005348) 70 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 6849 chr12 32917386 32917535 + 0 NA Intergenic Intergenic -20614 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 24318 chr6 30345108 30345262 + 0 NA promoter-TSS (NM_001199120) promoter-TSS (NM_001199120) 56 NM_001199121 79897 Hs.183232 NM_024839 ENSG00000241370 RPP21 C6orf135|CAT60 ribonuclease P/MRP subunit p21 protein-coding 20371 chr3 149387033 149387169 + 0 NA TTS (NR_046650) TTS (NR_046650) -9320 NM_014220 4071 Hs.351316 NM_014220 ENSG00000169908 TM4SF1 H-L6|L6|M3S1|TAAL6 transmembrane 4 L six family member 1 protein-coding 8657 chr13 114281480 114281584 + 0 NA promoter-TSS (NM_023011) promoter-TSS (NM_023011) -52 NM_080687 65110 Hs.533855 NM_023011 ENSG00000169062 UPF3A HUPF3A|RENT3A|UPF3 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 3139 chr1 246699271 246699372 + 0 NA Intergenic Intergenic -24755 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 24932 chr6 96897809 96897933 + 0 NA promoter-TSS (NM_014165) promoter-TSS (NM_014165) 20 NM_014165 29078 Hs.512144 NM_014165 ENSG00000123545 NDUFAF4 C6orf66|HRPAP20|HSPC125|My013|bA22L21.1 NADH:ubiquinone oxidoreductase complex assembly factor 4 protein-coding 2538 chr1 208184463 208184585 + 0 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 59796 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 1364 chr1 95742817 95742936 + 0 NA Intergenic L1PB1|LINE|L1 232760 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LOC100996635 - uncharacterized LOC100996635 ncRNA 27825 chr8 52832153 52832260 + 0 NA Intergenic L1ME3B|LINE|L1 -107702 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 23524 chr5 150701030 150701086 + 0 NA promoter-TSS (NM_018047) promoter-TSS (NM_018047) 49 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 17129 chr2 219598110 219598278 + 0 NA intron (NM_052902, intron 2 of 24) CpG-17045 343 NM_052902 114790 Hs.22410 NM_052902 ENSG00000144589 STK11IP LIP1|LKB1IP|STK11IP1 serine/threonine kinase 11 interacting protein protein-coding 21587 chr4 90958392 90958496 + 0 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 723413 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 7866 chr12 125237248 125237352 + 0 NA Intergenic Intergenic -89316 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 13075 chr17 78592490 78592594 + 0 NA Intergenic Intergenic -15148 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 22836 chr5 87121421 87121525 + 0 NA intron (NR_105018, intron 1 of 3) intron (NR_105018, intron 1 of 3) 1325 NR_105018 101929380 NR_105018 LOC101929380 - uncharacterized LOC101929380 ncRNA 15691 chr2 65819272 65819376 + 0 NA Intergenic Intergenic -386802 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 29746 chr9 105694509 105694620 + 0 NA promoter-TSS (NM_018112) promoter-TSS (NM_018112) 39 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 29229 chr9 72988106 72988197 + 0 NA Intergenic Intergenic -34834 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 8731 chr14 23321112 23321229 + 0 NA 5' UTR (NM_004643, exon 1 of 7) 5' UTR (NM_004643, exon 1 of 7) 982 NM_004643 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 29250 chr9 74078699 74078803 + 0 NA Intergenic L1PA17|LINE|L1 -292780 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 7378 chr12 88299858 88299932 + 0 NA Intergenic Intergenic 157599 NM_181783 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane and tetratricopeptide repeat containing 3 protein-coding 27808 chr8 51899167 51899322 + 0 NA promoter-TSS (NM_001286782) promoter-TSS (NM_001286782) -58 NM_001286783 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 15225 chr2 27134663 27134753 + 0 NA promoter-TSS (NM_001330485) promoter-TSS (NM_001330485) -33 NM_001330484 10113 Hs.279784 NM_013388 ENSG00000138073 PREB SEC12 prolactin regulatory element binding protein-coding 14514 chr19 43984030 43984176 + 0 NA promoter-TSS (NM_001260486) promoter-TSS (NM_001260486) -67 NM_001260487 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 23559 chr5 152688684 152688776 + 0 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) -283451 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 21505 chr4 81471844 81471948 + 0 NA promoter-TSS (NM_001300735) promoter-TSS (NM_001300735) 32 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 2144 chr1 179365901 179366005 + 0 NA promoter-TSS (NR_073544) promoter-TSS (NR_073544) -19 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 14231 chr19 17135587 17135797 + 0 NA intron (NM_001130065, intron 2 of 39) intron (NM_001130065, intron 2 of 39) 59911 NM_004145 4650 Hs.123198 NM_004145 ENSG00000099331 MYO9B CELIAC4|MYR5 myosin IXB protein-coding 378 chr1 24365313 24365453 + 0 NA TTS (NM_198174) TTS (NM_198174) 42343 NM_021180 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 18806 chr22 31496466 31496570 + 0 NA 5' UTR (NM_001007467, exon 1 of 33) 5' UTR (NM_001007467, exon 1 of 33) 379 NM_001258327 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 889 chr1 53942558 53942616 + 0 NA intron (NM_001316935, intron 1 of 5) intron (NM_001316935, intron 1 of 5) 3236 NR_133633 51668 Hs.525462 NM_016126 ENSG00000081870 HSPB11 C1orf41|HSPCO34|IFT25|PP25 heat shock protein family B (small) member 11 protein-coding 4926 chr11 16791689 16791845 + 0 NA intron (NM_001329631, intron 19 of 22) intron (NM_001329631, intron 19 of 22) 53166 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 29101 chr9 38047813 38048018 + 0 NA intron (NM_003028, intron 1 of 5) intron (NM_003028, intron 1 of 5) 21298 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 25227 chr6 139374577 139374719 + 0 NA promoter-TSS (NM_001168389) promoter-TSS (NM_001168389) 2 NM_006079 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 16381 chr2 137847553 137847683 + 0 NA Intergenic L1MA7|LINE|L1 80314 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 3390 chr10 21495854 21495933 + 0 NA TTS (NR_031736) TTS (NR_031736) 748 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 30581 chrX 24506220 24506275 + 0 NA intron (NM_001142386, intron 5 of 11) intron (NM_001142386, intron 5 of 11) 41020 NM_005391 5165 Hs.296031 NM_005391 ENSG00000067992 PDK3 CMTX6|GS1-358P8.4 pyruvate dehydrogenase kinase 3 protein-coding 30297 chr9 132582173 132582303 + 0 NA promoter-TSS (NM_020064) promoter-TSS (NM_020064) -368 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 26146 chr7 43522499 43522603 + 0 NA promoter-TSS (NR_038276) promoter-TSS (NR_038276) -9 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LOC100506895 - lncRNA#32 ncRNA 11068 chr16 17312185 17312289 + 0 NA intron (NM_022166, intron 2 of 11) intron (NM_022166, intron 2 of 11) 158644 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 3972 chr10 79298855 79298959 + 0 NA intron (NM_020338, intron 15 of 24) intron (NM_020338, intron 15 of 24) -48557 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 16870 chr2 196601477 196601674 + 0 NA Intergenic Intergenic -8964 NM_020760 57520 Hs.654742 NM_020760 ENSG00000138411 HECW2 NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 684 chr1 39691407 39691519 + 0 NA promoter-TSS (NM_001282396) promoter-TSS (NM_001282396) 22 NM_001282396 51440 Hs.743975 NM_016257 ENSG00000116983 HPCAL4 HLP4 hippocalcin like 4 protein-coding 8223 chr13 46052729 46052869 + 0 NA promoter-TSS (NR_046226) promoter-TSS (NR_046226) -21 NM_001330566 23091 Hs.136102 NM_015070 ENSG00000123200 ZC3H13 KIAA0853 zinc finger CCCH-type containing 13 protein-coding 18021 chr20 41017845 41017869 + 0 NA intron (NM_001318196, intron 2 of 2) intron (NM_001318196, intron 2 of 2) -10961 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 5032 chr11 26556725 26556829 + 0 NA intron (NM_001313726, intron 14 of 27) intron (NM_001313726, intron 14 of 27) 15491 NM_145650 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 12153 chr17 17028285 17028408 + 0 NA Intergenic Intergenic -14414 NM_201274 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 29388 chr9 83707893 83708003 + 0 NA promoter-TSS (NR_135840) promoter-TSS (NR_135840) 113 NR_135839 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 25618 chr7 6081406 6081555 + 0 NA Intergenic CpG -22251 NM_014413 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 19358 chr3 38031468 38031507 + 0 NA Intergenic Intergenic -1824 NM_006225 5333 Hs.80776 NM_006225 ENSG00000187091 PLCD1 NDNC3|PLC-III phospholipase C delta 1 protein-coding 15254 chr2 28269355 28269365 + 0 NA intron (NR_137440, intron 10 of 13) intron (NR_137440, intron 10 of 13) 41099 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 26378 chr7 70648211 70648287 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -484288 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 10712 chr15 90902614 90902718 + 0 NA promoter-TSS (NR_135502) promoter-TSS (NR_135502) -35 NR_135502 4122 Hs.116459 NM_006122 ENSG00000196547 MAN2A2 MANA2X mannosidase alpha class 2A member 2 protein-coding 5510 chr11 66282573 66282690 + 0 NA intron (NR_073078, intron 2 of 5) CpG 4430 NR_073079 254263 Hs.437072 NM_182553 ENSG00000174871 CNIH2 CNIH-2|Cnil cornichon family AMPA receptor auxiliary protein 2 protein-coding 12088 chr17 9050820 9050924 + 0 NA intron (NM_004822, intron 2 of 6) MIRb|SINE|MIR 29330 NM_004822 9423 Hs.660885 NM_004822 ENSG00000065320 NTN1 NTN1L netrin 1 protein-coding 1660 chr1 147890316 147890430 + 0 NA Intergenic Intergenic -12447 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 24656 chr6 47698452 47698587 + 0 NA promoter-TSS (NM_001347855) promoter-TSS (NM_001347855) -26 NM_153838 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 20468 chr3 155854510 155854699 + 0 NA promoter-TSS (NM_001190992) promoter-TSS (NM_001190992) -145 NM_001190992 9197 Hs.478031 NM_004733 ENSG00000169359 SLC33A1 ACATN|AT-1|AT1|CCHLND|SPG42 solute carrier family 33 member 1 protein-coding 15787 chr2 71747079 71747140 + 0 NA Intergenic Intergenic 280407 NM_001130987 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 19035 chr22 46762489 46762593 + 0 NA promoter-TSS (NM_001284304) promoter-TSS (NM_001284304) -76 NM_001284303 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 15345 chr2 36507492 36507633 + 0 NA intron (NM_016441, intron 8 of 16) intron (NM_016441, intron 8 of 16) 90627 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 13490 chr18 45441527 45441645 + 0 NA intron (NR_110899, intron 7 of 7) intron (NR_110899, intron 7 of 7) 65450 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 3887 chr10 73252645 73252730 + 0 NA promoter-TSS (NR_134459) promoter-TSS (NR_134459) 6 NM_016065 51021 Hs.180312 NM_016065 ENSG00000182180 MRPS16 CGI-132|COXPD2|MRP-S16|RPMS16 mitochondrial ribosomal protein S16 protein-coding 22728 chr5 74327125 74327229 + 0 NA intron (NR_105010, intron 2 of 2) intron (NR_105010, intron 2 of 2) 4691 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 9154 chr14 61525426 61525632 + 0 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 44665 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 5875 chr11 94493852 94493956 + 0 NA promoter-TSS (NM_005590) promoter-TSS (NM_005590) 4 NM_001330347 4361 Hs.192649 NM_005590 ENSG00000020922 MRE11 ATLD|HNGS1|MRE11A|MRE11B MRE11 homolog, double strand break repair nuclease protein-coding 11312 chr16 48961782 48961886 + 0 NA Intergenic LTR22C0|LTR|ERVK 319997 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 21397 chr4 56467471 56467596 + 0 NA promoter-TSS (NM_001267722) promoter-TSS (NM_001267722) -63 NM_001267722 6731 Hs.237825 NM_006947 ENSG00000174780 SRP72 BMFF|BMFS1|HEL103 signal recognition particle 72 protein-coding 992 chr1 61952320 61952424 + 0 NA intron (NM_176877, intron 27 of 42) intron (NM_176877, intron 27 of 42) -126414 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 24446 chr6 35392414 35392464 + 0 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 49881 NM_177435 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 18431 chr21 17611619 17611740 + 0 NA intron (NM_006806, intron 1 of 4) intron (NM_006806, intron 1 of 4) 1271 NM_006806 10950 Hs.473420 NM_006806 ENSG00000154640 BTG3 ANA|APRO4|TOB5|TOB55|TOFA BTG anti-proliferation factor 3 protein-coding 13639 chr18 57942237 57942341 + 0 NA Intergenic Intergenic -102089 NM_015277 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 10476 chr15 75903775 75903927 + 0 NA promoter-TSS (NM_012170) promoter-TSS (NM_012170) -8 NM_012170 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 9783 chr15 22238709 22238862 + 0 NA Intergenic Intergenic -13456 NR_031672 100302233 NR_031672 ENSG00000221641 MIR1268A MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a microRNA 1268a ncRNA 1954 chr1 162561319 162561465 + 0 NA promoter-TSS (NM_003115) promoter-TSS (NM_003115) -48 NM_001324116 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 28688 chr8 130528438 130528542 + 0 NA Intergenic Intergenic -84830 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 7127 chr12 56221946 56222075 + 0 NA promoter-TSS (NR_040053) promoter-TSS (NR_040053) -41 NM_194359 10193 Hs.524502 NM_005785 ENSG00000181852 RNF41 FLRF|NRDP1|SBBI03 ring finger protein 41 protein-coding 9573 chr14 92748581 92748734 + 0 NA promoter-TSS (NM_005606) promoter-TSS (NM_005606) 45 NM_001008530 5641 Hs.18069 NM_005606 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 26991 chr7 129665171 129665275 + 0 NA intron (NM_001293164, intron 2 of 9) intron (NM_001293164, intron 2 of 9) 35145 NM_001040110 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 18355 chr20 59996220 59996326 + 0 NA promoter-TSS (NM_021810) promoter-TSS (NM_021810) -89 NM_021810 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 16326 chr2 130882244 130882348 + 0 NA Intergenic Intergenic -34355 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 26865 chr7 116211395 116211546 + 0 NA intron (NM_015641, intron 1 of 6) intron (NM_015641, intron 1 of 6) 977 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 3391 chr10 21517277 21517437 + 0 NA exon (NM_207371, exon 4 of 4) exon (NM_207371, exon 4 of 4) 8325 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 29939 chr9 114806040 114806079 + 0 NA promoter-TSS (NM_005118) promoter-TSS (NM_005118) 69 NM_005118 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A tumor necrosis factor superfamily member 15 protein-coding 2973 chr1 233636088 233636294 + 0 NA intron (NM_002245, intron 1 of 2) L2a|LINE|L2 12039 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 2999 chr1 234975290 234975439 + 0 NA Intergenic Intergenic -11365 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 9295 chr14 69658102 69658206 + 0 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 46561 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 18207 chr20 51023163 51023226 + 0 NA promoter-TSS (NM_002237) promoter-TSS (NM_002237) -56 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 16444 chr2 149038019 149038077 + 0 NA promoter-TSS (NM_001317006) promoter-TSS (NM_001317006) -419 NM_177964 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 8447 chr13 94601702 94601856 + 0 NA promoter-TSS (NM_180989) promoter-TSS (NM_180989) -71 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 22225 chr5 10725262 10725336 + 0 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 35976 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 14540 chr19 45038966 45039070 + 0 NA promoter-TSS (NM_001278439) promoter-TSS (NM_001278439) -22 NM_001278439 11129 Hs.466917 NM_007056 ENSG00000104859 CLASRP CLASP|SFRS16|SWAP2 CLK4 associating serine/arginine rich protein protein-coding 13493 chr18 45691359 45691463 + 0 NA Intergenic Intergenic -32712 NM_001308278 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 29682 chr9 98975096 98975200 + 0 NA intron (NM_001855, intron 2 of 41) intron (NM_001855, intron 2 of 41) 31435 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 3158 chr1 247963049 247963120 + 0 NA intron (NM_001304535, intron 1 of 1) MER41B|LTR|ERV1 -2248 NM_001004491 391191 Hs.690413 NM_001004491 ENSG00000187080 OR2AK2 OR1-47|OR2AK1P olfactory receptor family 2 subfamily AK member 2 protein-coding 9452 chr14 79279250 79279409 + 0 NA promoter-TSS (NM_138970) promoter-TSS (NM_138970) -10 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 28478 chr8 118000484 118000588 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 111283 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 16453 chr2 149994370 149994474 + 0 NA Intergenic Intergenic -406606 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria and homocystinuria, cblD type protein-coding 15997 chr2 98483341 98483445 + 0 NA intron (NM_004027, intron 1 of 25) intron (NM_004027, intron 1 of 25) 38535 NM_001134224 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 26695 chr7 100148820 100148957 + 0 NA promoter-TSS (NM_001318236) promoter-TSS (NM_001318236) -11 NM_001318237 389541 Hs.406520 NM_001008395 ENSG00000188186 LAMTOR4 C7orf59 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 protein-coding 25485 chr6 167893562 167893702 + 0 NA intron (NM_001207008, intron 8 of 31) intron (NM_001207008, intron 8 of 31) 65997 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4 afadin, adherens junction formation factor protein-coding 16682 chr2 174248558 174248671 + 0 NA promoter-TSS (NM_001011708) promoter-TSS (NM_001011708) 56 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 2767 chr1 222243977 222244081 + 0 NA Intergenic L1MC4|LINE|L1 304073 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 5685 chr11 76381037 76381141 + 0 NA promoter-TSS (NM_004705) promoter-TSS (NM_004705) -124 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 6769 chr12 26691619 26691764 + 0 NA intron (NM_002223, intron 10 of 56) intron (NM_002223, intron 10 of 56) 141507 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 24775 chr6 71139344 71139491 + 0 NA Intergenic L1PA2|LINE|L1 -149025 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 15028 chr2 12151825 12151929 + 0 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) -47253 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 26500 chr7 81685067 81685174 + 0 NA intron (NR_126025, intron 1 of 10) MLT1I|LTR|ERVL-MaLR 6286 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 8171 chr13 41696550 41696704 + 0 NA intron (NM_015058, intron 29 of 44) MIRb|SINE|MIR -128232 NR_049803 100847026 NR_049803 ENSG00000102763 MIR5006 - microRNA 5006 ncRNA 16956 chr2 204545392 204545496 + 0 NA promoter-TSS (NM_001302769) promoter-TSS (NM_001302769) -349 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 15051 chr2 13558471 13558603 + 0 NA Intergenic MER77B|LTR|ERVL -551524 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 25484 chr6 167849975 167850079 + 0 NA intron (NM_001291964, intron 1 of 32) intron (NM_001291964, intron 1 of 32) 22392 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4 afadin, adherens junction formation factor protein-coding 10480 chr15 76311414 76311542 + 0 NA promoter-TSS (NM_001127716) promoter-TSS (NM_001127716) -9 NM_001127716 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein alpha subunit protein-coding 23912 chr6 3797553 3797657 + 0 NA Intergenic Intergenic -45593 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 7835 chr12 123602051 123602204 + 0 NA promoter-TSS (NM_020936) promoter-TSS (NM_020936) 50 NM_020936 57696 Hs.286173 NM_020936 ENSG00000111364 DDX55 - DEAD-box helicase 55 protein-coding 15631 chr2 61853808 61853862 + 0 NA intron (NR_037710, intron 1 of 5) CpG 308 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161 member A protein-coding 9897 chr15 38868428 38868559 + 0 NA Intergenic Charlie25|DNA|hAT-Charlie 171895 NM_207444 400359 Hs.448785 NM_207444 ENSG00000175779 C15orf53 - chromosome 15 open reading frame 53 protein-coding 1048 chr1 65420278 65420426 + 0 NA promoter-TSS (NM_001198683) promoter-TSS (NM_001198683) -96 NM_001198683 54741 Hs.23581 NM_017526 ENSG00000213625 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 13328 chr18 23689453 23689559 + 0 NA promoter-TSS (NR_130106) promoter-TSS (NR_130106) 63 NM_001127717 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 23468 chr5 148909897 148910001 + 0 NA Intergenic Intergenic 83356 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 18432 chr21 17612924 17613028 + 0 NA promoter-TSS (NM_001130914) promoter-TSS (NM_001130914) -26 NM_001130914 10950 Hs.473420 NM_006806 ENSG00000154640 BTG3 ANA|APRO4|TOB5|TOB55|TOFA BTG anti-proliferation factor 3 protein-coding 31147 chrX 150844196 150844300 + 0 NA intron (NM_134446, intron 1 of 8) intron (NM_134446, intron 1 of 8) 54568 NM_001184808 83692 Hs.522805 NM_031462 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule like 2 protein-coding 1061 chr1 66944765 66944869 + 0 NA intron (NM_001146113, intron 3 of 13) AluJb|SINE|Alu 14574 NM_001077704 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 28680 chr8 130309495 130309639 + 0 NA intron (NM_001247996, intron 4 of 30) intron (NM_001247996, intron 4 of 30) -13034 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 5039 chr11 27055205 27055320 + 0 NA intron (NR_125768, intron 3 of 3) intron (NR_125768, intron 3 of 3) 14300 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 25391 chr6 156729361 156729465 + 0 NA Intergenic L1ME1|LINE|L1 -48442 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 22769 chr5 78360505 78360609 + 0 NA promoter-TSS (NM_004866) promoter-TSS (NM_004866) -16 NR_105014 728769 Hs.586193 NR_105014 ENSG00000245556 SCAMP1-AS1 - SCAMP1 antisense RNA 1 ncRNA 14596 chr19 46600877 46601030 + 0 NA promoter-TSS (NM_001329921) promoter-TSS (NM_001329921) -121 NM_001329921 808 Hs.515487 NM_005184 ENSG00000160014 CALM3 CaM|CaMIII|HEL-S-72|PHKD|PHKD3 calmodulin 3 protein-coding 27238 chr7 151632102 151632197 + 0 NA 5' UTR (NM_024429, exon 1 of 12) 5' UTR (NM_024429, exon 1 of 12) 109 NM_024429 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 16704 chr2 176491334 176491458 + 0 NA Intergenic Intergenic 109656 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 21725 chr4 114599021 114599109 + 0 NA promoter-TSS (NM_001322114) promoter-TSS (NM_001322114) -220 NM_001322114 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 20804 chr3 183884838 183885000 + 0 NA promoter-TSS (NM_001324437) promoter-TSS (NM_001324437) -11 NM_001037639 55486 Hs.478469 NM_018622 ENSG00000175193 PARL PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1 presenilin associated rhomboid like protein-coding 12201 chr17 19766624 19766763 + 0 NA Intergenic Intergenic -18260 NM_000691 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 10858 chr16 1408550 1408636 + 0 NA intron (NM_001037125, intron 2 of 5) intron (NM_001037125, intron 2 of 5) 6127 NM_001193388 64718 Hs.643536 NM_023076 ENSG00000059145 UNKL C16orf28|ZC3H5L|ZC3HDC5L unkempt family like zinc finger protein-coding 3224 chr10 5546971 5547114 + 0 NA Intergenic Intergenic -20796 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 10853 chr16 1297037 1297168 + 0 NA Intergenic LTR10A|LTR|ERV1 -12051 NM_194261 7329 Hs.302903 NM_003345 ENSG00000103275 UBE2I C358B7.1|P18|UBC9 ubiquitin conjugating enzyme E2 I protein-coding 21389 chr4 55853553 55853746 + 0 NA promoter-TSS (NM_001024924) promoter-TSS (NM_001024924) -1 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 27920 chr8 61014239 61014343 + 0 NA Intergenic Intergenic -46543 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 21668 chr4 105991205 105991309 + 0 NA Intergenic Intergenic 31221 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 13746 chr18 68428189 68428293 + 0 NA Intergenic Intergenic 286875 NM_019022 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 10086 chr15 50908431 50908535 + 0 NA promoter-TSS (NM_001252127) promoter-TSS (NM_001252127) -189 NM_007347 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 epsilon 1 subunit protein-coding 19018 chr22 46013603 46013764 + 0 NA Intergenic Intergenic 7067 NR_027240 730668 Hs.640071 NR_027240 ENSG00000280424 LOC730668 - dynein heavy chain -like pseudogene pseudo 11675 chr16 77298807 77298982 + 0 NA intron (NM_001326358, intron 17 of 22) intron (NM_001326358, intron 17 of 22) 99442 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 10560 chr15 81324227 81324375 + 0 NA promoter-TSS (NR_120365) promoter-TSS (NR_120365) -32 NR_120365 101929655 Hs.696654 NR_120365 TMC3-AS1 - TMC3 antisense RNA 1 ncRNA 23322 chr5 139439463 139439613 + 0 NA promoter-TSS (NM_152686) promoter-TSS (NM_152686) -13 NM_152686 202052 Hs.483537 NM_152686 ENSG00000170464 DNAJC18 - DnaJ heat shock protein family (Hsp40) member C18 protein-coding 2859 chr1 226703527 226703530 + 0 NA intron (NM_002221, intron 2 of 7) CpG -28460 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 ncRNA 13911 chr19 2900702 2900787 + 0 NA promoter-TSS (NM_173480) promoter-TSS (NM_173480) -154 NM_173480 126295 Hs.591378 NM_173480 ENSG00000171970 ZNF57 ZNF424 zinc finger protein 57 protein-coding 31158 chrX 152072421 152072525 + 0 NA Intergenic Intergenic 45466 NM_021049 4104 Hs.18048 NM_021049 MAGEA5 CT1.5|MAGE5|MAGEA4 MAGE family member A5 protein-coding 6764 chr12 26293635 26293739 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 98114 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 999 chr1 62783734 62783875 + 0 NA promoter-TSS (NM_032852) promoter-TSS (NM_032852) -302 NM_178221 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 23616 chr5 158414890 158414987 + 0 NA Intergenic Intergenic -5165 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LOC101927697 - uncharacterized LOC101927697 ncRNA 9112 chr14 59278300 59278406 + 0 NA intron (NM_014992, intron 1 of 24) MER44D|DNA|TcMar-Tigger 14912 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 10840 chr16 354385 354386 + 0 NA Intergenic Intergenic -1709 NM_181050 8312 Hs.592082 NM_003502 ENSG00000103126 AXIN1 AXIN|PPP1R49 axin 1 protein-coding 29480 chr9 88271081 88271238 + 0 NA Intergenic Intergenic -117223 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 25357 chr6 152302116 152302220 + 0 NA intron (NM_182961, intron 91 of 145) CpG -78362 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 2169 chr1 181119484 181119588 + 0 NA Intergenic Intergenic 31034 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 18223 chr20 51800219 51800323 + 0 NA intron (NM_001318031, intron 1 of 3) intron (NM_001318031, intron 1 of 3) 2252 NM_020436 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 28675 chr8 130042377 130042531 + 0 NA Intergenic Intergenic -25803 NR_046361 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 18713 chr22 25154554 25154683 + 0 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -41926 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 19342 chr3 36969911 36970026 + 0 NA Intergenic Intergenic 23336 NM_014805 9852 Hs.28020 NM_014805 ENSG00000178567 EPM2AIP1 - EPM2A interacting protein 1 protein-coding 18685 chr22 23386040 23386122 + 0 NA Intergenic Intergenic -3955 NR_037839 649264 Hs.600549 NR_037839 CES5AP1 - carboxylesterase 5A pseudogene 1 pseudo 8545 chr13 105590072 105590176 + 0 NA Intergenic Intergenic -84443 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 18677 chr22 22195447 22195551 + 0 NA Intergenic Intergenic -49281 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB pre-B lymphocyte 1 protein-coding 6983 chr12 50025495 50025583 + 0 NA promoter-TSS (NM_001320003) promoter-TSS (NM_001320003) 18 NM_001320003 29127 Hs.505469 NM_013277 ENSG00000161800 RACGAP1 CYK4|HsCYK-4|ID-GAP|MgcRacGAP Rac GTPase activating protein 1 protein-coding 4599 chr10 127906933 127907001 + 0 NA promoter-TSS (NM_001323355) promoter-TSS (NM_001323355) -94 NM_001323355 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase, receptor type E protein-coding 24134 chr6 18155280 18155437 + 0 NA promoter-TSS (NM_153042) promoter-TSS (NM_153042) -30 NM_153042 221656 Hs.709336 NM_153042 ENSG00000165097 KDM1B AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2 lysine demethylase 1B protein-coding 24987 chr6 108562660 108562764 + 0 NA intron (NM_201559, intron 2 of 3) intron (NM_201559, intron 2 of 3) 1846 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 22426 chr5 40429684 40429765 + 0 NA Intergenic Intergenic -250206 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 30657 chrX 46327631 46327762 + 0 NA promoter-TSS (NR_110388) promoter-TSS (NR_110388) -22 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 4099 chr10 93746914 93747040 + 0 NA Intergenic Intergenic -10832 NM_001308275 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 1832 chr1 156054657 156054804 + 0 NA promoter-TSS (NM_001145264) promoter-TSS (NM_001145264) 4 NM_014017 28956 Hs.632483 NM_014017 ENSG00000116586 LAMTOR2 ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 protein-coding 29588 chr9 94630858 94630933 + 0 NA intron (NM_001127628, intron 2 of 7) intron (NM_001127628, intron 2 of 7) 8746 NM_000507 2203 Hs.494496 NM_000507 ENSG00000165140 FBP1 FBP fructose-bisphosphatase 1 protein-coding 24046 chr6 12009035 12009139 + 0 NA Intergenic (GCGGAGG)n|Simple_repeat|Simple_repeat -3404 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 16814 chr2 190319825 190319877 + 0 NA 5' UTR (NM_014362, exon 1 of 14) 5' UTR (NM_014362, exon 1 of 14) 194 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 21729 chr4 116016472 116016552 + 0 NA Intergenic HERV3-int|LTR|ERV1 -283213 NR_031737 100302290 NR_031737 ENSG00000270394 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 9327 chr14 71799017 71799125 + 0 NA Intergenic Intergenic -133029 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G-protein signaling 6 protein-coding 2704 chr1 218345955 218346059 + 0 NA promoter-TSS (NR_046268) promoter-TSS (NR_046268) -329 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 6191 chr11 119205851 119205955 + 0 NA promoter-TSS (NM_005188) promoter-TSS (NM_005188) -373 NM_005188 867 Hs.504096 NM_005188 ENSG00000110395 CBL C-CBL|CBL2|FRA11B|NSLL|RNF55 Cbl proto-oncogene protein-coding 7254 chr12 71581314 71581418 + 0 NA intron (NR_110596, intron 17 of 19) intron (NR_110596, intron 17 of 19) -82531 NM_031435 83591 Hs.245798 NM_031435 ENSG00000173451 THAP2 - THAP domain containing 2 protein-coding 12507 chr17 41919031 41919154 + 0 NA promoter-TSS (NM_001303274) promoter-TSS (NM_001303274) -70 NM_001303274 47 Hs.387567 NM_001096 ENSG00000131473 ACLY ACL|ATPCL|CLATP ATP citrate lyase protein-coding 23030 chr5 112922182 112922320 + 0 NA promoter-TSS (NM_005669) promoter-TSS (NM_005669) 83 NM_005669 7905 Hs.429608 NM_005669 ENSG00000129625 REEP5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e receptor accessory protein 5 protein-coding 3176 chr10 1060102 1060193 + 0 NA intron (NM_014023, intron 1 of 13) intron (NM_014023, intron 1 of 13) 3311 NM_014023 22884 Hs.188495 NM_014023 ENSG00000047056 WDR37 - WD repeat domain 37 protein-coding 13632 chr18 57771299 57771395 + 0 NA intron (NM_005603, intron 1 of 27) intron (NM_005603, intron 1 of 27) 31748 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 12180 chr17 18183347 18183499 + 0 NA promoter-TSS (NM_017758) promoter-TSS (NM_017758) -130 NM_017758 54890 Hs.744130 NM_017758 ENSG00000091542 ALKBH5 ABH5|OFOXD|OFOXD1 alkB homolog 5, RNA demethylase protein-coding 8109 chr13 35349764 35349917 + 0 NA intron (NM_015678, intron 37 of 57) intron (NM_015678, intron 37 of 57) 126855 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 14791 chr19 55063212 55063316 + 0 NA promoter-TSS (NM_001145971) promoter-TSS (NM_001145971) -47 NR_027382 112724 Hs.327631 NM_138412 ENSG00000160439 RDH13 SDR7C3 retinol dehydrogenase 13 protein-coding 7115 chr12 56007372 56007400 + 0 NA Intergenic Intergenic 10127 NM_000456 6821 Hs.558403 NM_000456 ENSG00000139531 SUOX - sulfite oxidase protein-coding 9831 chr15 32850135 32850239 + 0 NA intron (NM_001277313, intron 17 of 20) intron (NM_001277313, intron 17 of 20) -131322 NR_109767 100131315 Hs.610545 NR_109767 ENSG00000259721 LOC100131315 - uncharacterized LOC100131315 ncRNA 11895 chr17 1562745 1562890 + 0 NA promoter-TSS (NM_006224) promoter-TSS (NM_006224) -1 NM_006224 5306 Hs.429819 NM_006224 ENSG00000174238 PITPNA HEL-S-36|PI-TPalpha|PITPN|VIB1A phosphatidylinositol transfer protein alpha protein-coding 27314 chr8 1746223 1746400 + 0 NA Intergenic Intergenic 17023 NR_134302 101927752 Hs.356690 NR_134302 ENSG00000253982 LOC101927752 - uncharacterized LOC101927752 ncRNA 10767 chr15 95557633 95557790 + 0 NA Intergenic Intergenic 124618 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 4623 chr10 131888330 131888473 + 0 NA Intergenic L1MC2|LINE|L1 -12243 NM_001291310 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 23064 chr5 115749146 115749285 + 0 NA Intergenic ERV24B_Prim-int|LTR|ERV1 67442 NM_001323567 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 21263 chr4 25865740 25865873 + 0 NA Intergenic Intergenic -2211 NM_001297592 23231 Hs.479384 NM_015187 ENSG00000091490 SEL1L3 Sel-1L3 SEL1L family member 3 protein-coding 16695 chr2 175181638 175181778 + 0 NA promoter-TSS (NM_001002258) promoter-TSS (NM_001002258) -45 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5G3 P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) protein-coding 14455 chr19 40443156 40443300 + 0 NA promoter-TSS (NM_013368) promoter-TSS (NM_013368) -630 NM_013368 29946 Hs.515412 NM_013368 ENSG00000167565 SERTAD3 RBT1 SERTA domain containing 3 protein-coding 4388 chr10 114061295 114061379 + 0 NA Intergenic MER110|LTR|ERV1 17290 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 734 chr1 42456884 42457008 + 0 NA promoter-TSS (NM_001146192) promoter-TSS (NM_001146192) 452 NM_001077447 79717 Hs.706662 NM_024664 ENSG00000127125 PPCS - phosphopantothenoylcysteine synthetase protein-coding 13358 chr18 26656994 26657141 + 0 NA intron (NM_001258222, intron 1 of 4) CpG 334 NM_001258222 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 7724 chr12 118302208 118302291 + 0 NA intron (NM_001346493, intron 1 of 22) intron (NM_001346493, intron 1 of 22) 57471 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 30014 chr9 120532564 120532668 + 0 NA intron (NR_073558, intron 7 of 37) MamRep605|LTR?|LTR? 47554 NR_073558 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 14976 chr2 9753295 9753341 + 0 NA Intergenic Intergenic -90124 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 13411 chr18 32383132 32383262 + 0 NA intron (NM_022751, intron 2 of 5) intron (NM_022751, intron 2 of 5) 87287 NM_022751 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 2621 chr1 211944906 211945019 + 0 NA exon (NM_001199809, exon 18 of 19) exon (NM_001199809, exon 18 of 19) -90591 NM_016448 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 24586 chr6 43171166 43171246 + 0 NA promoter-TSS (NM_003131) promoter-TSS (NM_003131) -89 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 9890 chr15 38251983 38252068 + 0 NA promoter-TSS (NM_152594) promoter-TSS (NM_152594) -826 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 30989 chrX 115713603 115713653 + 0 NA Intergenic Intergenic 120121 NM_001282338 5358 Hs.496622 NM_005032 ENSG00000102024 PLS3 BMND18|T-plastin plastin 3 protein-coding 13293 chr18 21391283 21391475 + 0 NA intron (NM_001142966, intron 4 of 32) Tigger3b|DNA|TcMar-Tigger 149137 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772 growth regulation by estrogen in breast cancer 1 like protein-coding 6736 chr12 23472389 23472493 + 0 NA Intergenic L1PA15-16|LINE|L1 112171 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding 30482 chrX 10351144 10351248 + 0 NA Intergenic Intergenic 194251 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49 chloride voltage-gated channel 4 protein-coding 11235 chr16 30658327 30658333 + 0 NA Intergenic CpG -1189 NM_001105079 64319 Hs.247186 NM_022452 ENSG00000156860 FBRS FBS|FBS1 fibrosin protein-coding 20938 chr3 190319825 190319929 + 0 NA intron (NM_021101, intron 1 of 3) intron (NM_021101, intron 1 of 3) 2569 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 14623 chr19 47600373 47600568 + 0 NA Intergenic CpG -7726 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 29455 chr9 87179711 87179775 + 0 NA Intergenic (TTG)n|Simple_repeat|Simple_repeat 31099 NM_001001709 401535 Hs.657740 NM_001001709 C9orf170 - chromosome 9 open reading frame 170 protein-coding 17294 chr2 233247825 233247999 + 0 NA Intergenic Intergenic -3659 NM_001190266 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 9917 chr15 40118683 40118787 + 0 NA Intergenic Intergenic -9851 NM_001003943 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 5806 chr11 86741979 86742083 + 0 NA Intergenic LTR78|LTR|ERV1 -49028 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 protease, serine 23 protein-coding 15392 chr2 38778054 38778158 + 0 NA promoter-TSS (NM_024775) promoter-TSS (NM_024775) -79 NM_024775 79833 Hs.143818 NM_024775 ENSG00000152147 GEMIN6 - gem nuclear organelle associated protein 6 protein-coding 5340 chr11 61369696 61369874 + 0 NA TTS (NM_016464) TTS (NM_016464) -7502 NM_153611 220002 Hs.22546 NM_153611 ENSG00000162144 CYB561A3 CYBASC3|LCYTB cytochrome b561 family member A3 protein-coding 12062 chr17 7990262 7990404 + 0 NA Intergenic CpG -12337 NM_000180 3000 Hs.592109 NM_000180 ENSG00000132518 GUCY2D CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC guanylate cyclase 2D, retinal protein-coding 23860 chr6 1131890 1132022 + 0 NA Intergenic Intergenic -30624 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 23189 chr5 131170851 131171005 + 0 NA promoter-TSS (NM_181705) promoter-TSS (NM_181705) 14 NM_001293735 90624 Hs.115467 NM_181705 ENSG00000186687 LYRM7 C5orf31|MC3DN8|MZM1L LYR motif containing 7 protein-coding 18436 chr21 18833107 18833211 + 0 NA Intergenic MLT2D|LTR|ERVL -73347 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 13092 chr17 79797162 79797323 + 0 NA promoter-TSS (NM_020649) promoter-TSS (NM_020649) -126 NM_020649 57332 Hs.387258 NM_020649 ENSG00000141570 CBX8 PC3|RC1 chromobox 8 protein-coding 26873 chr7 116499387 116499526 + 0 NA promoter-TSS (NM_001206748) promoter-TSS (NM_001206748) -145 NM_001206747 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 25656 chr7 7438988 7439142 + 0 NA intron (NM_001037763, intron 21 of 34) intron (NM_001037763, intron 21 of 34) 96764 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 25308 chr6 149233438 149233540 + 0 NA intron (NM_001292035, intron 2 of 6) L2c|LINE|L2 15565 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 9659 chr14 99604499 99604651 + 0 NA promoter-TSS (NM_001329411) promoter-TSS (NM_001329411) 78 NM_001329411 84439 Hs.131714 NM_032425 ENSG00000182218 HHIPL1 KIAA1822|UNQ9245 HHIP like 1 protein-coding 3379 chr10 21315500 21315604 + 0 NA Intergenic AluJr|SINE|Alu 141250 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 373 chr1 24266615 24266651 + 0 NA Intergenic Intergenic -52689 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 5359 chr11 62054620 62054754 + 0 NA Intergenic HERVK3-int|LTR|ERVK -69286 NM_001040694 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 5609 chr11 70270643 70270690 + 0 NA promoter-TSS (NM_177423) promoter-TSS (NM_177423) -34 NR_045286 8500 Hs.530749 NM_003626 ENSG00000131626 PPFIA1 LIP.1|LIP1|LIPRIN PTPRF interacting protein alpha 1 protein-coding 29875 chr9 111844070 111844256 + 0 NA Intergenic Intergenic -49155 NR_109816 158401 Hs.428209 NM_173521 ENSG00000165181 C9orf84 - chromosome 9 open reading frame 84 protein-coding 29259 chr9 75028551 75028655 + 0 NA promoter-TSS (NM_152420) promoter-TSS (NM_152420) -173 NR_135282 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 28206 chr8 93991517 93991574 + 0 NA Intergenic Intergenic 74494 NM_001161781 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 14286 chr19 19063793 19063889 + 0 NA promoter-TSS (NM_178526) promoter-TSS (NM_178526) -120 NM_001321544 284439 Hs.303669 NM_178526 ENSG00000181035 SLC25A42 - solute carrier family 25 member 42 protein-coding 7319 chr12 79844757 79844861 + 0 NA intron (NM_001244990, intron 4 of 24) L2a|LINE|L2 69102 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 30595 chrX 30283671 30283775 + 0 NA Intergenic MamGypLTR1a|LTR|Gypsy 25655 NM_000475 190 Hs.268490 NM_000475 ENSG00000169297 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0 group B member 1 protein-coding 16868 chr2 196459657 196459761 + 0 NA intron (NM_020760, intron 1 of 28) MER72|LTR|ERV1 -97585 NM_001304840 57520 Hs.654742 NM_020760 ENSG00000138411 HECW2 NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 6148 chr11 118077033 118077052 + 0 NA promoter-TSS (NM_001083947) promoter-TSS (NM_001083947) 30 NM_001173552 56649 Hs.161985 NM_019894 ENSG00000137648 TMPRSS4 CAPH2|MT-SP2|TMPRSS3 transmembrane protease, serine 4 protein-coding 1752 chr1 152953890 152953994 + 0 NA Intergenic Intergenic -16711 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 24695 chr6 52670991 52671187 + 0 NA promoter-TSS (NM_014051) promoter-TSS (NM_014051) 3 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 26981 chr7 128962433 128962620 + 0 NA intron (NR_034053, intron 22 of 23) intron (NR_034053, intron 22 of 23) 21856 NM_001098627 3663 Hs.521181 NM_032643 ENSG00000128604 IRF5 SLEB10 interferon regulatory factor 5 protein-coding 23027 chr5 112861156 112861220 + 0 NA promoter-TSS (NM_001204196) promoter-TSS (NM_001204196) 0 NM_001204193 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 26119 chr7 41247635 41247788 + 0 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 146107 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 4508 chr10 121165496 121165560 + 0 NA Intergenic Intergenic -314349 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 15425 chr2 42568776 42568802 + 0 NA intron (NM_001330444, intron 1 of 15) CpG 272 NM_001330443 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 2874 chr1 227788087 227788215 + 0 NA Intergenic CpG -27566 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 protease, serine 38 protein-coding 26178 chr7 44780967 44781029 + 0 NA Intergenic Intergenic -15638 NM_021130 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 13174 chr17 82519551 82519688 + 0 NA promoter-TSS (NM_004514) promoter-TSS (NM_004514) -99 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 1622 chr1 143246995 143247149 + 0 NA Intergenic Intergenic 175520 NR_027354 645166 Hs.744183 NR_027354 LOC645166 - lymphocyte-specific protein 1 pseudogene pseudo 13211 chr18 2571423 2571455 + 0 NA promoter-TSS (NM_001308401) promoter-TSS (NM_001308401) 64 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 8060 chr13 30705826 30705930 + 0 NA Intergenic LTR79|LTR|ERVL -7600 NM_001204406 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 11462 chr16 65547824 65547928 + 0 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 28424 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 3685 chr10 52319101 52319324 + 0 NA Intergenic L1ME4b|LINE|L1 4931 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 28421 chr8 109334193 109334320 + 0 NA promoter-TSS (NM_032869) promoter-TSS (NM_032869) -67 NR_036471 56943 Hs.492555 NM_020189 ENSG00000120533 ENY2 DC6|Sus1|e(y)2 ENY2, transcription and export complex 2 subunit protein-coding 15519 chr2 48111758 48111857 + 0 NA Intergenic Intergenic -202849 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 19468 chr3 48446662 48446766 + 0 NA promoter-TSS (NM_001271022) promoter-TSS (NM_001271022) 4 NM_130384 84126 Hs.694840 NM_032166 ENSG00000164053 ATRIP - ATR interacting protein protein-coding 30679 chrX 48004005 48004154 + 0 NA promoter-TSS (NM_001178099) promoter-TSS (NM_001178099) -84 NM_001178099 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 19313 chr3 32420348 32420452 + 0 NA intron (NM_181472, intron 1 of 3) intron (NM_181472, intron 1 of 3) 28729 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 15961 chr2 95345635 95345739 + 0 NA intron (NM_013434, intron 2 of 8) CpG -1333 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 5753 chr11 83071871 83072025 + 0 NA promoter-TSS (NR_038903) promoter-TSS (NR_038903) -25 NM_014488 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 30071 chr9 122931551 122931705 + 0 NA promoter-TSS (NM_001304364) promoter-TSS (NM_001304364) -77 NM_020924 57684 Hs.5638 NM_020924 ENSG00000171448 ZBTB26 ZNF481|bioref zinc finger and BTB domain containing 26 protein-coding 19351 chr3 37853875 37853979 + 0 NA intron (NR_110532, intron 1 of 5) intron (NR_110532, intron 1 of 5) 7853 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 18608 chr22 17558524 17558609 + 0 NA TTS (NM_001290047) TTS (NM_001290047) -4873 NM_001303484 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 28971 chr9 20236825 20236929 + 0 NA Intergenic Intergenic 174361 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 27204 chr7 149234025 149234039 + 0 NA Intergenic Intergenic -5619 NM_012256 7988 Hs.490510 NM_012256 ENSG00000170260 ZNF212 C2H2-150|ZNF182|ZNFC150 zinc finger protein 212 protein-coding 7901 chr12 131896238 131896339 + 0 NA intron (NM_003565, intron 3 of 27) CpG 1554 NM_003565 8408 Hs.47061 NM_003565 ENSG00000177169 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 23166 chr5 128436883 128436952 + 0 NA intron (NM_001999, intron 7 of 64) intron (NM_001999, intron 7 of 64) 101125 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 12239 chr17 27332900 27332989 + 0 NA Intergenic CpG 38864 NM_134265 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 3709 chr10 57898414 57898526 + 0 NA Intergenic LTR9A1|LTR|ERV1 369464 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 30211 chr9 128947450 128947510 + 0 NA promoter-TSS (NM_015354) promoter-TSS (NM_015354) -213 NM_015354 23511 Hs.308340 NM_015354 ENSG00000095319 NUP188 KIAA0169|hNup188 nucleoporin 188 protein-coding 25601 chr7 5549411 5549548 + 0 NA Intergenic Intergenic -18878 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 30978 chrX 112841534 112841674 + 0 NA promoter-TSS (NM_133265) promoter-TSS (NM_133265) -789 NM_133265 154796 Hs.528051 NM_133265 ENSG00000126016 AMOT - angiomotin protein-coding 15012 chr2 11374747 11374899 + 0 NA Intergenic Intergenic -19158 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 10432 chr15 73994593 73994697 + 0 NA promoter-TSS (NM_033250) promoter-TSS (NM_033250) -23 NM_001324227 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 1893 chr1 159598381 159598485 + 0 NA Intergenic Intergenic 10607 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 30406 chrUn_GL000216v2 16087 16241 + 0 NA NA (CATTC)n|Satellite|Satellite NA NA 9461 chr14 80638758 80638912 + 0 NA intron (NM_152446, intron 18 of 23) intron (NM_152446, intron 18 of 23) 300705 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 3572 chr10 34954315 34954373 + 0 NA Intergenic Intergenic 119986 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 534 chr1 31897663 31897757 + 0 NA Intergenic Intergenic 21948 NM_001195100 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 746 chr1 42958841 42959047 + 0 NA promoter-TSS (NR_033967) promoter-TSS (NR_033967) -105 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 18940 chr22 40711765 40711801 + 0 NA Intergenic LTR81A|LTR|Gypsy 32605 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 14480 chr19 41859658 41859796 + 0 NA promoter-TSS (NM_001022) promoter-TSS (NM_001022) -191 NM_001022 6223 Hs.438429 NM_001022 ENSG00000105372 RPS19 DBA|DBA1|S19 ribosomal protein S19 protein-coding 20794 chr3 183285929 183286071 + 0 NA intron (NM_015078, intron 14 of 29) intron (NM_015078, intron 14 of 29) 32756 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 11558 chr16 69339613 69339765 + 0 NA promoter-TSS (NM_032382) promoter-TSS (NM_032382) -66 NM_032382 84342 Hs.130849 NM_032382 ENSG00000213380 COG8 CDG2H|DOR1 component of oligomeric golgi complex 8 protein-coding 22766 chr5 78294705 78294809 + 0 NA promoter-TSS (NM_001271769) promoter-TSS (NM_001271769) -2 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 beta 1 subunit protein-coding 7734 chr12 119716639 119716648 + 0 NA intron (NM_001206999, intron 32 of 47) intron (NM_001206999, intron 32 of 47) -2919 NR_031589 100302274 NR_031589 ENSG00000122966 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 3822 chr10 69408957 69409100 + 0 NA exon (NM_001057, exon 3 of 5) exon (NM_001057, exon 3 of 5) 7890 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 29783 chr9 107711695 107711799 + 0 NA Intergenic Intergenic -222027 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 13559 chr18 49723971 49723996 + 0 NA Intergenic Intergenic 89898 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 11910 chr17 2049863 2050015 + 0 NA promoter-TSS (NR_029674) promoter-TSS (NR_029674) 69 NR_029674 406921 NR_029674 ENSG00000267200 MIR132 MIRN132|miRNA132|mir-132 microRNA 132 ncRNA 26979 chr7 128862655 128862817 + 0 NA promoter-TSS (NM_001198909) promoter-TSS (NM_001198909) -67 NM_001198909 9296 Hs.78089 NM_004231 ENSG00000128524 ATP6V1F ATP6S14|VATF|Vma7 ATPase H+ transporting V1 subunit F protein-coding 26145 chr7 43516907 43517093 + 0 NA intron (NR_038276, intron 1 of 2) Tigger3c|DNA|TcMar-Tigger 5542 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LOC100506895 - lncRNA#32 ncRNA 24715 chr6 53746552 53746674 + 0 NA Intergenic Intergenic -48367 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 20195 chr3 134320931 134320995 + 0 NA Intergenic Intergenic 46899 NR_106885 102466744 NR_106885 ENSG00000277723 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 18127 chr20 47274596 47274681 + 0 NA intron (NM_183048, intron 11 of 21) intron (NM_183048, intron 11 of 21) -43864 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 30818 chrX 71532873 71532977 + 0 NA promoter-TSS (NM_181672) promoter-TSS (NM_181672) -137 NM_181673 8473 Hs.405410 NM_003605 ENSG00000147162 OGT HINCUT-1|HRNT1|O-GLCNAC O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 10616 chr15 85584249 85584353 + 0 NA intron (NM_007200, intron 7 of 36) intron (NM_007200, intron 7 of 36) -35649 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 10635 chr15 87354841 87354945 + 0 NA Intergenic Intergenic -222036 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 7831 chr12 123436682 123436786 + 0 NA promoter-TSS (NM_145058) promoter-TSS (NM_145058) -1 NR_130703 196383 Hs.488173 NM_145058 ENSG00000150977 RILPL2 RLP2 Rab interacting lysosomal protein like 2 protein-coding 475 chr1 28328920 28329096 + 0 NA promoter-TSS (NM_001127350) promoter-TSS (NM_001127350) 6 NM_017638 54797 Hs.479911 NM_017638 ENSG00000130772 MED18 p28b mediator complex subunit 18 protein-coding 6032 chr11 108593728 108593832 + 0 NA promoter-TSS (NM_015065) promoter-TSS (NM_015065) -42 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 24309 chr6 30066927 30067079 + 0 NA promoter-TSS (NM_021959).4 promoter-TSS (NM_021959).4 -152 NM_021959 6992 Hs.82887 NM_021959 ENSG00000204619 PPP1R11 CFAP255|HCG-V|HCGV|IPP3|TCTE5|TCTEX5 protein phosphatase 1 regulatory inhibitor subunit 11 protein-coding 14591 chr19 46232105 46232255 + 0 NA TTS (NM_198541) TTS (NM_198541) 2428 NM_198541 374918 Hs.546554 NM_198541 ENSG00000188293 IGFL1 APRG644|UNQ644 IGF like family member 1 protein-coding 8624 chr13 110870267 110870406 + 0 NA promoter-TSS (NR_027701) promoter-TSS (NR_027701) -28 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 12639 chr17 49414860 49414964 + 0 NA promoter-TSS (NM_001281497) promoter-TSS (NM_001281497) -7 NM_002634 5245 Hs.514303 NM_002634 ENSG00000167085 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 27358 chr8 8669841 8669904 + 0 NA Intergenic Intergenic -32284 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 15349 chr2 36701643 36701747 + 0 NA intron (NM_053276, intron 1 of 15) intron (NM_053276, intron 1 of 15) 5005 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT - vitrin protein-coding 23325 chr5 139561196 139561300 + 0 NA promoter-TSS (NM_003339) promoter-TSS (NM_003339) 82 NM_181838 7322 Hs.108332 NM_003339 ENSG00000131508 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin conjugating enzyme E2 D2 protein-coding 14410 chr19 38304088 38304221 + 0 NA promoter-TSS (NM_001317801) promoter-TSS (NM_001317801) -7 NM_001317801 64073 Hs.631544 NM_022125 ENSG00000167644 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 4047 chr10 89262494 89262598 + 0 NA Intergenic Intergenic -10507 NM_000235 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 7199 chr12 62602439 62602543 + 0 NA non-coding (NR_121682, exon 1 of 1) non-coding (NR_121682, exon 1 of 1) 943 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 17460 chr20 2109066 2109170 + 0 NA intron (NM_080836, intron 2 of 3) intron (NM_080836, intron 2 of 3) 7236 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 16481 chr2 153059738 153059928 + 0 NA Intergenic L2|LINE|L2 341940 NR_024526 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 2545 chr1 208988807 208988946 + 0 NA Intergenic Intergenic -336580 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 24675 chr6 51339850 51339965 + 0 NA Intergenic Intergenic -281963 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 14224 chr19 16702273 16702287 + 0 NA Intergenic Intergenic -17696 NM_001007525 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 27676 chr8 35720991 35721027 + 0 NA intron (NM_080872, intron 8 of 16) intron (NM_080872, intron 8 of 16) -10689 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 14342 chr19 32405958 32406088 + 0 NA promoter-TSS (NR_046201) promoter-TSS (NR_046201) -93 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like 3 (C. elegans) protein-coding 13875 chr19 1857494 1857598 + 0 NA intron (NM_031918, intron 1 of 1) intron (NM_031918, intron 1 of 1) 6019 NM_031918 83855 Hs.136280 NM_031918 ENSG00000129911 KLF16 BTEB4|DRRF|NSLP2 Kruppel like factor 16 protein-coding 27285 chr7 157292790 157292977 + 0 NA Intergenic Intergenic -44133 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 9596 chr14 94174446 94174572 + 0 NA exon (NM_058237, exon 1 of 25) exon (NM_058237, exon 1 of 25) 197 NM_058237 57718 Hs.259599 NM_020958 ENSG00000119698 PPP4R4 CFAP14|KIAA1622|PP4R4 protein phosphatase 4 regulatory subunit 4 protein-coding 24239 chr6 26532922 26533074 + 0 NA Intergenic Intergenic -5346 NM_006353 10473 Hs.236774 NM_006353 ENSG00000182952 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 23266 chr5 135377195 135377298 + 0 NA intron (NM_004893, intron 2 of 8) intron (NM_004893, intron 2 of 8) 21992 NM_138610 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 13085 chr17 78979905 78980011 + 0 NA promoter-TSS (NM_005567) promoter-TSS (NM_005567) 21 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 21580 chr4 90127407 90127493 + 0 NA promoter-TSS (NM_001145065) promoter-TSS (NM_001145065) -83 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 16407 chr2 142974442 142974493 + 0 NA intron (NM_001199241, intron 9 of 14) MER4C|LTR|ERV1 96841 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 15386 chr2 38603083 38603104 + 0 NA promoter-TSS (NM_001142650) promoter-TSS (NM_001142650) -57 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 20328 chr3 143307924 143307989 + 0 NA intron (NM_173653, intron 14 of 15) MER81|DNA|hAT-Blackjack -34290 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 12680 chr17 50639270 50639458 + 0 NA intron (NM_003786, intron 1 of 30) intron (NM_003786, intron 1 of 30) 4507 NM_003786 8714 Hs.463421 NM_003786 ENSG00000108846 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP binding cassette subfamily C member 3 protein-coding 25860 chr7 23531951 23532146 + 0 NA promoter-TSS (NM_001282757) promoter-TSS (NM_001282757) -7 NM_013293 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 1195 chr1 84834521 84834680 + 0 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 58613 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 21337 chr4 48341146 48341282 + 0 NA promoter-TSS (NM_020846) promoter-TSS (NM_020846) -382 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 20153 chr3 131026778 131026911 + 0 NA promoter-TSS (NM_001321223) promoter-TSS (NM_001321223) -6 NM_001321222 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 5646 chr11 73307749 73307896 + 0 NA promoter-TSS (NM_014786) promoter-TSS (NM_014786) -796 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding 5082 chr11 30435619 30435738 + 0 NA intron (NM_001145399, intron 4 of 6) intron (NM_001145399, intron 4 of 6) 112579 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 20000 chr3 120177240 120177436 + 0 NA intron (NM_153002, intron 7 of 8) intron (NM_153002, intron 7 of 8) 66957 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 1327 chr1 93964913 93965065 + 0 NA Intergenic Intergenic -55391 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 7785 chr12 121799663 121799720 + 0 NA intron (NR_002809, intron 5 of 6) intron (NR_002809, intron 5 of 6) 3793 NR_002809 338799 Hs.524804 NR_002809 ENSG00000212694 LINC01089 LIMT long intergenic non-protein coding RNA 1089 ncRNA 9865 chr15 35482095 35482246 + 0 NA intron (NM_080650, intron 3 of 8) L1M4a2|LINE|L1 -64025 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-AS1 ATPBD4-AS1 DPH6 antisense RNA 1 (head to head) ncRNA 25437 chr6 160300454 160300533 + 0 NA Intergenic Intergenic -41562 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 16029 chr2 101251930 101252034 + 0 NA promoter-TSS (NM_017546) promoter-TSS (NM_017546) -901 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 7144 chr12 56688191 56688280 + 0 NA promoter-TSS (NR_104219) promoter-TSS (NR_104219) 173 NM_001282604 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding 18728 chr22 26658961 26659083 + 0 NA intron (NR_033321, intron 1 of 3) MIRc|SINE|MIR 1540 NR_033320 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript (non-protein coding) ncRNA 20303 chr3 141979167 141979239 + 0 NA intron (NM_001178142, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 21184 NM_001178140 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 14492 chr19 42243165 42243243 + 0 NA promoter-TSS (NM_019884) promoter-TSS (NM_019884) -620 NM_019884 2931 Hs.466828 NM_019884 ENSG00000105723 GSK3A - glycogen synthase kinase 3 alpha protein-coding 3985 chr10 80408326 80408539 + 0 NA promoter-TSS (NM_001243780) promoter-TSS (NM_001243780) -54 NM_032333 84293 Hs.500333 NM_032333 ENSG00000122378 FAM213A C10orf58|PAMM family with sequence similarity 213 member A protein-coding 30285 chr9 131733784 131733900 + 0 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 3696 NM_005312 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 20537 chr3 159775665 159775741 + 0 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -7091 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 2780 chr1 223081478 223081582 + 0 NA Intergenic CpG 61752 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 22272 chr5 16552818 16552969 + 0 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -43895 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 FAM134B JK-1|JK1 family with sequence similarity 134 member B protein-coding 22067 chr4 182144289 182144375 + 0 NA intron (NR_125905, intron 1 of 4) CpG-21660 183 NR_125905 90768 Hs.175465 NR_027107 LOC90768 - uncharacterized LOC90768 ncRNA 12864 chr17 65278415 65278519 + 0 NA Intergenic Intergenic 141129 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 19502 chr3 49802711 49802814 + 0 NA promoter-TSS (NM_203370) promoter-TSS (NM_203370) -492 NM_203370 389119 Hs.86674 NM_203370 ENSG00000185614 FAM212A C3orf54|INKA1 family with sequence similarity 212 member A protein-coding 2229 chr1 184792688 184792792 + 0 NA 3' UTR (NM_052966, exon 14 of 14) 3' UTR (NM_052966, exon 14 of 14) -37833 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 23513 chr5 150409836 150409940 + 0 NA intron (NM_001025158, intron 1 of 5) intron (NM_001025158, intron 1 of 5) 3048 NM_004355 972 Hs.436568 NM_004355 ENSG00000019582 CD74 DHLAG|HLADG|II|Ia-GAMMA CD74 molecule protein-coding 22401 chr5 38599004 38599190 + 0 NA intron (NR_103554, intron 2 of 8) intron (NR_103554, intron 2 of 8) -3692 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 22444 chr5 41246516 41246620 + 0 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 14870 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 9650 chr14 99272310 99272334 + 0 NA promoter-TSS (NM_001282237) promoter-TSS (NM_001282237) -609 NM_001282237 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 1599 chr1 119002115 119002219 + 0 NA promoter-TSS (NR_135035) promoter-TSS (NR_135035) -762 NR_135035 105378933 Hs.599652 NR_135034 ENSG00000226172 LOC105378933 - uncharacterized LOC105378933 ncRNA 6283 chr11 125300927 125301038 + 0 NA intron (NM_022062, intron 2 of 12) MIR3|SINE|MIR 136319 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 21336 chr4 48269759 48269863 + 0 NA promoter-TSS (NM_003215) promoter-TSS (NM_003215) -14 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 18314 chr20 57618203 57618307 + 0 NA intron (NM_001160419, intron 1 of 4) intron (NM_001160419, intron 1 of 4) 2321 NM_001160419 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 3013 chr1 235367338 235367461 + 0 NA promoter-TSS (NM_001287801) promoter-TSS (NM_001287801) 39 NM_001079515 6905 Hs.744998 NM_003193 ENSG00000116957 TBCE HRD|KCS|KCS1|PEAMO|pac2 tubulin folding cofactor E protein-coding 2306 chr1 197783786 197783885 + 0 NA Intergenic Intergenic -8342 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 1149 chr1 78004776 78004939 + 0 NA promoter-TSS (NM_001317103) promoter-TSS (NM_001317103) 29 NM_001317103 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 21356 chr4 51842965 51843036 + 0 NA promoter-TSS (NM_001040402) promoter-TSS (NM_001040402) 0 NM_001287757 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 29095 chr9 37650957 37651107 + 0 NA promoter-TSS (NM_014907) promoter-TSS (NM_014907) -23 NM_014907 22844 Hs.163990 NM_014907 ENSG00000070601 FRMPD1 FRMD2 FERM and PDZ domain containing 1 protein-coding 30252 chr9 130043374 130043482 + 0 NA promoter-TSS (NM_015033) promoter-TSS (NM_015033) -234 NM_015033 23048 Hs.189409 NM_015033 ENSG00000187239 FNBP1 FBP17 formin binding protein 1 protein-coding 28190 chr8 92966096 92966221 + 0 NA promoter-TSS (NM_001191036) promoter-TSS (NM_001191036) -14 NM_001171795 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 10727 chr15 92831851 92831955 + 0 NA Intergenic Intergenic 36419 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 12768 chr17 58113217 58113321 + 0 NA Intergenic Intergenic 29850 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 28596 chr8 125430195 125430299 + 0 NA promoter-TSS (NM_025195) promoter-TSS (NM_025195) -74 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 30830 chrX 73862360 73862464 + 0 NA Intergenic L1M2|LINE|L1 -9659 NR_001564 7503 Hs.529901 NR_001564 ENSG00000229807 XIST DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66 X inactive specific transcript (non-protein coding) ncRNA 22462 chr5 43064882 43064959 + 0 NA TTS (NR_034127) TTS (NR_034127) 2051 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 27765 chr8 46125799 46125903 + 0 NA Intergenic HERV3-int|LTR|ERV1 -715035 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 24619 chr6 45445964 45446082 + 0 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 23446 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 28732 chr8 133675077 133675215 + 0 NA intron (NR_134462, intron 1 of 2) intron (NR_134462, intron 1 of 2) 8920 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 26092 chr7 39580561 39580673 + 0 NA intron (NM_001282446, intron 2 of 2) intron (NM_001282446, intron 2 of 2) 14241 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1D1 C7orf36|GK003 Yae1 domain containing 1 protein-coding 12162 chr17 17476908 17477060 + 0 NA promoter-TSS (NM_018019) promoter-TSS (NM_018019) -2 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 27544 chr8 23798542 23798646 + 0 NA Intergenic Intergenic 56213 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 21274 chr4 27442798 27442902 + 0 NA Intergenic MLT2A2|LTR|ERVL 225371 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LOC101929199 - uncharacterized LOC101929199 ncRNA 5559 chr11 67401772 67401894 + 0 NA promoter-TSS (NM_206873) promoter-TSS (NM_206873) 72 NM_001008709 5499 Hs.183994 NM_002708 ENSG00000172531 PPP1CA PP-1A|PP1A|PP1alpha|PPP1A protein phosphatase 1 catalytic subunit alpha protein-coding 27801 chr8 49796306 49796410 + 0 NA Intergenic Intergenic -113368 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 19708 chr3 94936311 94936335 + 0 NA Intergenic Intergenic -1940 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 29629 chr9 96619838 96619962 + 0 NA promoter-TSS (NM_033331) promoter-TSS (NM_033331) -70 NM_033331 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 7339 chr12 82897100 82897204 + 0 NA intron (NM_001320322, intron 3 of 5) intron (NM_001320322, intron 3 of 5) 209997 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 22893 chr5 93620605 93620740 + 0 NA TTS (NR_031754) TTS (NR_031754) 116 NR_031754 100313887 NR_031754 ENSG00000113391 MIR2277 mir-2277 microRNA 2277 ncRNA 20063 chr3 124887238 124887342 + 0 NA promoter-TSS (NM_002213) promoter-TSS (NM_002213) 15 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 18698 chr22 24486595 24486699 + 0 NA intron (NR_028483, intron 1 of 7) CR1-3_Croc|LINE|CR1 8427 NR_028484 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 12030 chr17 7280513 7280606 + 0 NA Intergenic Intergenic -1176 NM_001042 6517 Hs.380691 NM_001042 ENSG00000181856 SLC2A4 GLUT4 solute carrier family 2 member 4 protein-coding 4688 chr11 1830790 1830868 + 0 NA Intergenic Intergenic -3481 NM_001290334 90019 Hs.161031 NM_138567 ENSG00000149043 SYT8 - synaptotagmin 8 protein-coding 20496 chr3 157160225 157160363 + 0 NA 5' UTR (NM_020307, exon 1 of 11) 5' UTR (NM_020307, exon 1 of 11) 466 NM_001308185 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 11339 chr16 51557080 51557184 + 0 NA Intergenic Intergenic -205387 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 6026 chr11 108121520 108121624 + 0 NA promoter-TSS (NM_000019) promoter-TSS (NM_000019) 41 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 11117 chr16 21953245 21953298 + 0 NA 5' UTR (NM_003366, exon 1 of 14) 5' UTR (NM_003366, exon 1 of 14) 207 NM_003366 7385 Hs.528803 NM_003366 ENSG00000140740 UQCRC2 MC3DN5|QCR2|UQCR2 ubiquinol-cytochrome c reductase core protein II protein-coding 4146 chr10 96832957 96833061 + 0 NA promoter-TSS (NM_032440) promoter-TSS (NM_032440) 54 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 28189 chr8 92965576 92965679 + 0 NA promoter-TSS (NM_001191036) promoter-TSS (NM_001191036) -38 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 15651 chr2 63841752 63841856 + 0 NA promoter-TSS (NM_006759) promoter-TSS (NM_006759) -76 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 22469 chr5 43426062 43426166 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR -13723 NM_001301874 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 18772 chr22 29993041 29993145 + 0 NA intron (NM_153051, intron 7 of 18) L2a|LINE|L2 -13956 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 16748 chr2 180125737 180125841 + 0 NA Intergenic Intergenic -118736 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 22314 chr5 19880938 19881042 + 0 NA intron (NM_001291957, intron 1 of 12) Tigger19b|DNA|TcMar-Tigger 5282 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 8253 chr13 48976431 48976507 + 0 NA promoter-TSS (NM_001278438) promoter-TSS (NM_001278438) -140 NR_103528 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 18094 chr20 45469772 45469774 + 0 NA promoter-TSS (NM_006103) promoter-TSS (NM_006103) 19 NM_006103 10406 Hs.2719 NM_006103 ENSG00000101443 WFDC2 EDDM4|HE4|WAP5|dJ461P17.6 WAP four-disulfide core domain 2 protein-coding 18793 chr22 30830272 30830376 + 0 NA intron (NM_001282741, intron 1 of 12) intron (NM_001282741, intron 1 of 12) 7808 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 5176 chr11 36448184 36448228 + 0 NA intron (NM_001160169, intron 6 of 6) intron (NM_001160169, intron 6 of 6) 47209 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 7945 chr13 20902837 20902849 + 0 NA promoter-TSS (NM_022459) promoter-TSS (NM_022459) -69 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 16990 chr2 207337805 207337941 + 0 NA Intergenic Intergenic -68449 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 28375 chr8 104199986 104200090 + 0 NA intron (NM_014677, intron 17 of 21) intron (NM_014677, intron 17 of 21) -23297 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 17285 chr2 232550574 232550739 + 0 NA promoter-TSS (NR_049797) promoter-TSS (NR_049797) -66 NM_145702 200765 Hs.211823 NM_145702 ENSG00000221944 TIGD1 EEYORE tigger transposable element derived 1 protein-coding 29946 chr9 115023144 115023248 + 0 NA intron (NM_002160, intron 27 of 27) intron (NM_002160, intron 27 of 27) -92601 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 27865 chr8 55879709 55879836 + 0 NA promoter-TSS (NM_001111097) promoter-TSS (NM_001111097) -55 NM_001111097 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 19509 chr3 50088841 50088922 + 0 NA promoter-TSS (NM_005778) promoter-TSS (NM_005778) -27 NM_005778 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 18423 chr21 15618166 15618270 + 0 NA Intergenic Intergenic -111807 NM_013396 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 30935 chrX 107654932 107655102 + 0 NA Intergenic Intergenic 26593 NM_002764 5631 Hs.56 NM_002764 ENSG00000147224 PRPS1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI phosphoribosyl pyrophosphate synthetase 1 protein-coding 26029 chr7 34260428 34260532 + 0 NA Intergenic LTR16A1|LTR|ERVL 355569 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 23841 chr5 180810521 180810654 + 0 NA promoter-TSS (NM_001114618) promoter-TSS (NM_001114618) -450 NM_001114617 4245 Hs.519818 NM_002406 ENSG00000131446 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 7210 chr12 63319511 63319618 + 0 NA Intergenic Intergenic -166754 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 7431 chr12 93087460 93087532 + 0 NA intron (NR_040096, intron 3 of 4) MER110|LTR|ERV1 -86870 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LOC102724933 - uncharacterized LOC102724933 ncRNA 692 chr1 39988748 39988865 + 0 NA Intergenic MER20B|DNA|hAT-Charlie 33694 NM_032793 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 27901 chr8 59119671 59119775 + 0 NA promoter-TSS (NM_014729) promoter-TSS (NM_014729) -515 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 18107 chr20 45935187 45935330 + 0 NA intron (NM_022104, intron 1 of 16) intron (NM_022104, intron 1 of 16) 580 NM_022104 63935 Hs.472856 NM_022104 ENSG00000100982 PCIF1 C20orf67|PPP1R121 PDX1 C-terminal inhibiting factor 1 protein-coding 15711 chr2 67464029 67464133 + 0 NA Intergenic Intergenic 66771 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 Ewing tumor associated antigen 1 protein-coding 13154 chr17 82098796 82098897 + 0 NA promoter-TSS (NM_004104) promoter-TSS (NM_004104) -616 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 17326 chr2 236045728 236045832 + 0 NA intron (NM_001037131, intron 15 of 17) intron (NM_001037131, intron 15 of 17) 122229 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 8083 chr13 33120000 33120104 + 0 NA intron (NM_178006, intron 7 of 13) intron (NM_178006, intron 7 of 13) 66027 NM_001243466 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 12814 chr17 62188869 62188963 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 86739 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 11716 chr16 81401177 81401281 + 0 NA Intergenic Intergenic 16211 NR_039871 100616150 NR_039871 ENSG00000261609 MIR4720 - microRNA 4720 ncRNA 854 chr1 48878596 48878700 + 0 NA intron (NM_001323573, intron 5 of 12) L2b|LINE|L2 -101679 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 6072 chr11 111651493 111651597 + 0 NA intron (NM_015191, intron 3 of 14) L1PA10|LINE|L1 49154 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 21186 chr4 13627658 13627788 + 0 NA promoter-TSS (NR_049814) promoter-TSS (NR_049814) -19 NM_148894 259282 Hs.744935 NM_148894 ENSG00000038219 BOD1L1 BOD1L|FAM44A biorientation of chromosomes in cell division 1 like 1 protein-coding 18040 chr20 41693496 41693655 + 0 NA Intergenic Intergenic -75081 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 14547 chr19 45338750 45338877 + 0 NA Intergenic Intergenic -1927 NM_177417 147700 Hs.298079 NM_145275 ENSG00000104892 KLC3 KLC2|KLC2L|KLCt|KNS2B kinesin light chain 3 protein-coding 4023 chr10 86649233 86649337 + 0 NA Intergenic Intergenic -5272 NM_001030015 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 3020 chr1 235910476 235910611 + 0 NA Intergenic Intergenic -26835 NM_001301365 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 20425 chr3 152359753 152359857 + 0 NA intron (NM_001314057, intron 2 of 11) intron (NM_001314057, intron 2 of 11) -18815 NR_132656 645843 Hs.632562 NM_001123228 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 3550 chr10 33005787 33005867 + 0 NA Intergenic Intergenic -47462 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 7276 chr12 75825702 75825849 + 0 NA Intergenic L2|LINE|L2 206001 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 4392 chr10 114247031 114247133 + 0 NA intron (NM_001320804, intron 1 of 13) intron (NM_001320804, intron 1 of 13) 7468 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|NET42 von Willebrand factor A domain containing 2 protein-coding 3034 chr1 236604449 236604606 + 0 NA promoter-TSS (NM_018072) promoter-TSS (NM_018072) 14 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 13118 chr17 81101878 81101985 + 0 NA intron (NM_006340, intron 7 of 14) intron (NM_006340, intron 7 of 14) 23442 NR_030394 724027 NR_030394 ENSG00000207736 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 2891 chr1 228165578 228165728 + 0 NA promoter-TSS (NR_103539) promoter-TSS (NR_103539) -141 NR_103540 574432 Hs.568467 NR_103539 ENSG00000203684 IBA57-AS1 C1orf148 IBA57 antisense RNA 1 (head to head) ncRNA 14661 chr19 48795438 48795564 + 0 NA intron (NM_001164773, intron 8 of 8) intron (NM_001164773, intron 8 of 8) 15562 NM_001190 587 Hs.512670 NM_001190 ENSG00000105552 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino acid transaminase 2 protein-coding 26124 chr7 41705195 41705376 + 0 NA intron (NR_027119, intron 1 of 2) intron (NR_027119, intron 1 of 2) -2177 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin beta A subunit protein-coding 19493 chr3 49340097 49340116 + 0 NA promoter-TSS (NM_001251877) promoter-TSS (NM_001251877) -3 NM_003363 7375 Hs.77500 NM_003363 ENSG00000114316 USP4 UNP|Unph ubiquitin specific peptidase 4 protein-coding 19779 chr3 101849318 101849395 + 0 NA promoter-TSS (NM_031419) promoter-TSS (NM_031419) -158 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 21535 chr4 84582498 84582655 + 0 NA promoter-TSS (NM_001263) promoter-TSS (NM_001263) -328 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS CDP-diacylglycerol synthase 1 protein-coding 303 chr1 20411309 20411413 + 0 NA intron (NR_033887, intron 1 of 11) intron (NR_033887, intron 1 of 11) 17433 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 6268 chr11 124758477 124758562 + 0 NA promoter-TSS (NR_120577) promoter-TSS (NR_120577) -615 NR_120577 101929340 Hs.173840 NR_120577 ENSG00000250073 LOC101929340 - uncharacterized LOC101929340 ncRNA 614 chr1 35718755 35718848 + 0 NA 5' UTR (NM_152374, exon 1 of 2) 5' UTR (NM_152374, exon 1 of 2) 388 NM_152374 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 6931 chr12 46548058 46548159 + 0 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 164001 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 2963 chr1 233025683 233025787 + 0 NA intron (NM_014801, intron 25 of 33) MIRb|SINE|MIR 74893 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 1765 chr1 153566716 153566805 + 0 NA promoter-TSS (NM_005978) promoter-TSS (NM_005978) -930 NM_005978 6273 Hs.516484 NM_005978 ENSG00000196754 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 6521 chr12 6493259 6493363 + 0 NA promoter-TSS (NM_014865) promoter-TSS (NM_014865) -6 NM_016497 51258 Hs.55847 NM_016497 ENSG00000111639 MRPL51 CDA09|HSPC241|MRP64|bMRP64 mitochondrial ribosomal protein L51 protein-coding 6446 chr12 1796228 1796254 + 0 NA intron (NM_172364, intron 35 of 37) CpG -24026 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 28882 chr9 3746479 3746583 + 0 NA Intergenic Intergenic 78445 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 17593 chr20 10674314 10674322 + 0 NA promoter-TSS (NM_000214) promoter-TSS (NM_000214) -272 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|HJ1|JAGL1 jagged 1 protein-coding 12421 chr17 38674926 38675044 + 0 NA promoter-TSS (NM_001130677).2 promoter-TSS (NM_001130677).2 -51 NM_001130677 100170841 Hs.445574 NM_001130677 ENSG00000273604 EPOP C17orf96|PRR28 elongin BC and polycomb repressive complex 2 associated protein protein-coding 23595 chr5 157390774 157390897 + 0 NA intron (NM_014376, intron 30 of 30) intron (NM_014376, intron 30 of 30) -45114 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 18983 chr22 42995265 42995326 + 0 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) 19883 NM_001184970 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 17915 chr20 35147239 35147413 + 0 NA promoter-TSS (NM_001145025) promoter-TSS (NM_001145025) 32 NR_026728 55741 Hs.720177 NM_018217 ENSG00000088298 EDEM2 C20orf31|C20orf49|bA4204.1 ER degradation enhancing alpha-mannosidase like protein 2 protein-coding 9017 chr14 53011045 53011149 + 0 NA Intergenic Intergenic -60000 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 22160 chr5 2157513 2157542 + 0 NA Intergenic ERVL-int|LTR|ERVL 154674 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 17709 chr20 18879420 18879549 + 0 NA Intergenic L1PB1|LINE|L1 -49281 NM_001302818 100128496 Hs.664484 NM_001242671 C20orf78 dJ1068E13.1 chromosome 20 open reading frame 78 protein-coding 25097 chr6 124741496 124741600 + 0 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -220997 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 7091 chr12 54324951 54325064 + 0 NA promoter-TSS (NR_073424) promoter-TSS (NR_073424) -83 NR_073424 22818 Hs.505652 NM_016057 ENSG00000111481 COPZ1 CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP coatomer protein complex subunit zeta 1 protein-coding 28151 chr8 87981393 87981497 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -107377 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 6436 chr12 991044 991105 + 0 NA promoter-TSS (NR_027949) promoter-TSS (NR_027949) -134 NR_027949 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 28023 chr8 73356447 73356618 + 0 NA promoter-TSS (NR_125388) promoter-TSS (NR_125388) -71 NR_125388 101926926 Hs.640090 NR_125388 ENSG00000250295 RDH10-AS1 - RDH10 antisense RNA 1 ncRNA 25340 chr6 150895261 150895365 + 0 NA intron (NM_001242768, intron 7 of 27) intron (NM_001242768, intron 7 of 27) 28980 NM_001242768 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 9086 chr14 57492940 57493040 + 0 NA intron (NM_001283060, intron 1 of 5) intron (NM_001283060, intron 1 of 5) 873 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 C14orf105 - chromosome 14 open reading frame 105 protein-coding 1302 chr1 91872651 91872755 + 0 NA intron (NM_001195684, intron 2 of 17) intron (NM_001195684, intron 2 of 17) 13576 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 2239 chr1 185317446 185317586 + 0 NA promoter-TSS (NM_006469) promoter-TSS (NM_006469) -187 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 7488 chr12 98064523 98064698 + 0 NA Intergenic Intergenic -69162 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 24397 chr6 32838744 32838856 + 0 NA promoter-TSS (NM_018833) promoter-TSS (NM_018833) 23 NM_001290043 6891 Hs.502 NM_000544 ENSG00000204267 TAP2 ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11 transporter 2, ATP binding cassette subfamily B member protein-coding 12456 chr17 40201916 40202001 + 0 NA Intergenic Intergenic 8361 NR_106927 102465523 NR_106927 ENSG00000274621 MIR6867 hsa-mir-6867 microRNA 6867 ncRNA 10979 chr16 8730371 8730475 + 0 NA intron (NM_001127448, intron 1 of 15) intron (NM_001127448, intron 1 of 15) 9707 NM_001127448 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 19734 chr3 98562327 98562425 + 0 NA Intergenic Intergenic 30477 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 23369 chr5 141557769 141557857 + 0 NA promoter-TSS (NR_038333) promoter-TSS (NR_038333) -498 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 3341 chr10 16436860 16437028 + 0 NA promoter-TSS (NM_030664) promoter-TSS (NM_030664) 1 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 20149 chr3 130821050 130821193 + 0 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -29404 NM_001199182 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 17550 chr20 6663948 6664052 + 0 NA Intergenic MIR|SINE|MIR -104098 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 20410 chr3 151543633 151543737 + 0 NA Intergenic LTR18B|LTR|ERVL 22310 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 23422 chr5 144582183 144582332 + 0 NA Intergenic Intergenic 411384 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 17636 chr20 13099872 13099986 + 0 NA intron (NM_018327, intron 6 of 11) intron (NM_018327, intron 6 of 11) 90950 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 3587 chr10 37857631 37857784 + 0 NA promoter-TSS (NM_001267605) promoter-TSS (NM_001267605) -71 NM_001267606 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 11867 chr17 489006 489110 + 0 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -43118 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 28995 chr9 23674261 23674365 + 0 NA Intergenic Intergenic -1914 NR_121602 101929563 Hs.533220 NR_121602 LOC101929563 - uncharacterized LOC101929563 ncRNA 16589 chr2 164842200 164842304 + 0 NA promoter-TSS (NM_001278461) promoter-TSS (NM_001278461) -84 NM_001278460 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 11196 chr16 29790511 29790661 + 0 NA promoter-TSS (NM_001256269) promoter-TSS (NM_001256269) -127 NM_001256269 3835 Hs.612151 NM_007317 ENSG00000079616 KIF22 A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2 kinesin family member 22 protein-coding 20461 chr3 155282929 155283033 + 0 NA Intergenic LTR7C|LTR|ERV1 10719 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 19191 chr3 14144531 14144543 + 0 NA TTS (NM_024334) TTS (NM_024334) 19597 NM_024334 79188 Hs.517817 NM_024334 ENSG00000170876 TMEM43 ARVC5|ARVD5|EDMD7|LUMA transmembrane protein 43 protein-coding 19174 chr3 12759425 12759529 + 0 NA promoter-TSS (NM_001284407) promoter-TSS (NM_001284407) -168 NM_018306 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 17457 chr20 2102251 2102378 + 0 NA intron (NM_080836, intron 1 of 3) CpG 432 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 21391 chr4 55949189 55949293 + 0 NA intron (NM_025009, intron 1 of 25) CpG 433 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 832 chr1 46804515 46804663 + 0 NA intron (NM_001319163, intron 1 of 9) L2c|LINE|L2 5591 NM_001319161 1580 Hs.436317 NM_000779 ENSG00000142973 CYP4B1 CYPIVB1|P-450HP cytochrome P450 family 4 subfamily B member 1 protein-coding 17946 chr20 36122476 36122607 + 0 NA intron (NM_001258329, intron 2 of 22) intron (NM_001258329, intron 2 of 22) 29831 NM_177996 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 17572 chr20 10219610 10219721 + 0 NA promoter-TSS (NR_040710) promoter-TSS (NR_040710) -159 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 23928 chr6 4487697 4487794 + 0 NA Intergenic LTR10A|LTR|ERV1 59743 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 2135 chr1 178725300 178725439 + 0 NA 5' UTR (NM_001286247, exon 1 of 19) 5' UTR (NM_001286247, exon 1 of 19) 222 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 21420 chr4 68361232 68361336 + 0 NA Intergenic AluJr|SINE|Alu -11167 NM_001031732 91746 Hs.175955 NM_133370 ENSG00000083896 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 14423 chr19 38649813 38649966 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 2273 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 1831 chr1 156020904 156021046 + 0 NA promoter-TSS (NM_003145) promoter-TSS (NM_003145) -8 NM_003145 6746 Hs.74564 NM_003145 ENSG00000163479 SSR2 HSD25|TLAP|TRAP-BETA|TRAPB signal sequence receptor subunit 2 protein-coding 15588 chr2 56334127 56334231 + 0 NA intron (NM_001080433, intron 2 of 5) L2a|LINE|L2 -148409 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 29323 chr9 78540060 78540164 + 0 NA Intergenic Intergenic 243037 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 21518 chr4 83034962 83034992 + 0 NA promoter-TSS (NM_001258006) promoter-TSS (NM_001258006) -109 NM_016129 51138 Hs.190384 NM_016129 ENSG00000138663 COPS4 CSN4|SGN4 COP9 signalosome subunit 4 protein-coding 26650 chr7 97928396 97928515 + 0 NA Intergenic CpG -35203 NR_049875 100847066 NR_049875 ENSG00000266318 MIR5692A1 - microRNA 5692a-1 ncRNA 21523 chr4 83256887 83256989 + 0 NA Intergenic Intergenic 27976 NM_015697 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 8587 chr13 109254415 109254418 + 0 NA Intergenic MIR3|SINE|MIR -87113 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 27876 chr8 56320516 56320620 + 0 NA 5' UTR (NM_138969, exon 1 of 7) 5' UTR (NM_138969, exon 1 of 7) 208 NM_001318049 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 4614 chr10 130025446 130025470 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR -61631 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|O/E-2|OE-2 early B-cell factor 3 protein-coding 17657 chr20 14845733 14845837 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) 83733 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 1404 chr1 100133007 100133161 + 0 NA promoter-TSS (NM_194292) promoter-TSS (NM_194292) 11 NM_001304829 163786 Hs.591447 NM_194292 ENSG00000156876 SASS6 MCPH14|SAS-6|SAS6 SAS-6 centriolar assembly protein protein-coding 25166 chr6 133339726 133339813 + 0 NA intron (NM_001301012, intron 2 of 17) intron (NM_001301012, intron 2 of 17) 98270 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 19234 chr3 19937760 19937864 + 0 NA intron (NM_001330688, intron 1 of 14) intron (NM_001330688, intron 1 of 14) -3598 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 9225 chr14 65238647 65238792 + 0 NA Intergenic AluJb|SINE|Alu -16372 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 25926 chr7 27372420 27372573 + 0 NA Intergenic MSTB1|LTR|ERVL-MaLR -125267 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 9501 chr14 87522765 87522869 + 0 NA Intergenic MSTB|LTR|ERVL-MaLR 470454 NM_001201401 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 424 chr1 26501089 26501221 + 0 NA Intergenic CpG -28603 NM_002953 6195 Hs.149957 NM_002953 ENSG00000117676 RPS6KA1 HU-1|MAPKAPK1A|RSK|RSK1|p90Rsk ribosomal protein S6 kinase A1 protein-coding 6786 chr12 27592713 27592863 + 0 NA intron (NM_001198915, intron 2 of 26) intron (NM_001198915, intron 2 of 26) 68676 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 21825 chr4 139178055 139178155 + 0 NA promoter-TSS (NM_001331036) promoter-TSS (NM_001331036) -887 NM_001331036 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 27343 chr8 8255508 8255612 + 0 NA Intergenic L1ME1|LINE|L1 26990 NR_024363 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 26628 chr7 95492030 95492243 + 0 NA intron (NM_145872, intron 1 of 2) MamRTE1|LINE|RTE-BovB 6235 NM_145872 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 7500 chr12 98593539 98593668 + 0 NA promoter-TSS (NM_002635) promoter-TSS (NM_002635) -22 NM_002635 5250 Hs.290404 NM_002635 ENSG00000075415 SLC25A3 OK/SW-cl.48|PHC|PTP solute carrier family 25 member 3 protein-coding 21803 chr4 130703566 130703655 + 0 NA Intergenic LOR1-int|LTR|ERV1 -932132 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LOC101927282 - uncharacterized LOC101927282 ncRNA 17532 chr20 5674377 5674481 + 0 NA Intergenic L1ME3G|LINE|L1 -63403 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 11399 chr16 56577031 56577137 + 0 NA Intergenic Intergenic 12035 NM_032935 84560 Hs.567624 NM_032935 ENSG00000102891 MT4 MT-4|MT-IV|MTIV metallothionein 4 protein-coding 2402 chr1 202076954 202077058 + 0 NA Intergenic Intergenic -45895 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 28304 chr8 100559668 100559858 + 0 NA promoter-TSS (NM_198401) promoter-TSS (NM_198401) 23 NM_001270379 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 22268 chr5 16492535 16492639 + 0 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) 16411 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 FAM134B JK-1|JK1 family with sequence similarity 134 member B protein-coding 26952 chr7 124929962 124930079 + 0 NA promoter-TSS (NM_001042594) promoter-TSS (NM_001042594) -37 NR_003102 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 347 chr1 23452081 23452197 + 0 NA intron (NM_017707, intron 4 of 24) intron (NM_017707, intron 4 of 24) -27360 NM_003196 6920 Hs.446354 NM_003196 ENSG00000204219 TCEA3 TFIIS|TFIIS.H transcription elongation factor A3 protein-coding 12553 chr17 44087051 44087155 + 0 NA intron (NM_001015053, intron 13 of 26) (ACAC)n|Simple_repeat|Simple_repeat 16373 NM_138387 92579 Hs.294005 NM_138387 ENSG00000141349 G6PC3 SCN4|UGRP glucose-6-phosphatase catalytic subunit 3 protein-coding 20925 chr3 189908767 189908871 + 0 NA Intergenic Intergenic 78897 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 434 chr1 26853228 26853377 + 0 NA intron (NM_032283, intron 7 of 7) intron (NM_032283, intron 7 of 7) -9840 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 28867 chr9 470247 470390 + 0 NA promoter-TSS (NM_001256876) promoter-TSS (NM_001256876) 24 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 11377 chr16 54929229 54929392 + 0 NA promoter-TSS (NM_001308963) promoter-TSS (NM_001308963) -121 NR_034105 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed (non-protein coding) protein-coding 865 chr1 51569897 51570018 + 0 NA Intergenic MIRb|SINE|MIR -46917 NM_148909 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 5982 chr11 103109354 103109514 + 0 NA promoter-TSS (NM_001377) promoter-TSS (NM_001377) 3 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 3165 chr1 248873704 248873900 + 0 NA Intergenic CpG -14686 NM_001193328 55657 Hs.377705 NM_017865 ENSG00000171163 ZNF692 AREBP|Zfp692 zinc finger protein 692 protein-coding 5557 chr11 67374262 67374370 + 0 NA promoter-TSS (NM_013246) promoter-TSS (NM_013246) -139 NM_001166212 23529 Hs.502977 NM_013246 ENSG00000175505 CLCF1 BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6 cardiotrophin-like cytokine factor 1 protein-coding 8127 chr13 38349780 38349936 + 0 NA promoter-TSS (NM_001286703) promoter-TSS (NM_001286703) 87 NM_001286703 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20 ubiquitin fold modifier 1 protein-coding 17763 chr20 22776028 22776132 + 0 NA Intergenic Intergenic -168563 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 13457 chr18 36947969 36948073 + 0 NA intron (NM_020776, intron 5 of 9) MER4D1|LTR|ERV1 -24207 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 11532 chr16 68636160 68636256 + 0 NA Intergenic Intergenic -8628 NM_001317195 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 11107 chr16 20904907 20905011 + 0 NA intron (NR_126516, intron 2 of 3) intron (NR_126516, intron 2 of 3) 3855 NM_001302835 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 19871 chr3 111747614 111747761 + 0 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) 15207 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 14468 chr19 40778025 40778129 + 0 NA promoter-TSS (NR_037791) promoter-TSS (NR_037791) -142 NM_016154 53916 Hs.631539 NM_016154 ENSG00000167578 RAB4B - RAB4B, member RAS oncogene family protein-coding 4654 chr11 356261 356428 + 0 NA Intergenic CpG -13451 NM_178537 338707 Hs.148074 NM_178537 ENSG00000182272 B4GALNT4 - beta-1,4-N-acetyl-galactosaminyltransferase 4 protein-coding 24674 chr6 50905428 50905532 + 0 NA Intergenic MIRb|SINE|MIR 86754 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 14813 chr19 55385745 55385913 + 0 NA promoter-TSS (NM_001136136) promoter-TSS (NM_001136136) -103 NM_001136135 6158 Hs.652114 NM_000991 ENSG00000108107 RPL28 L28 ribosomal protein L28 protein-coding 3929 chr10 75359240 75359344 + 0 NA intron (NR_038225, intron 3 of 3) intron (NR_038225, intron 3 of 3) -42236 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 18258 chr20 53867916 53868015 + 0 NA Intergenic Intergenic 7744 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 15418 chr2 41928824 41928928 + 0 NA Intergenic Intergenic 4847 NR_110263 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 9806 chr15 29843815 29843919 + 0 NA intron (NM_001301025, intron 2 of 28).2 L2a|LINE|L2 -21364 NM_175610 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 3462 chr10 25174620 25174724 + 0 NA promoter-TSS (NM_020752) promoter-TSS (NM_020752) -689 NM_020752 57512 Hs.499108 NM_020752 ENSG00000151025 GPR158 - G protein-coupled receptor 158 protein-coding 11664 chr16 75647621 75647821 + 0 NA promoter-TSS (NM_018975) promoter-TSS (NM_018975) -16 NM_018975 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 1116 chr1 71081282 71081399 + 0 NA promoter-TSS (NR_046217) promoter-TSS (NR_046217) 16 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 24527 chr6 41072390 41072533 + 0 NA promoter-TSS (NM_002505) promoter-TSS (NM_002505) 153 NM_001329695 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 27081 chr7 138092781 138092885 + 0 NA intron (NM_001190907, intron 3 of 7) Tigger3b|DNA|TcMar-Tigger 16401 NM_001190906 6718 Hs.201667 NM_005989 ENSG00000122787 AKR1D1 3o5bred|CBAS2|SRD5B1 aldo-keto reductase family 1 member D1 protein-coding 26723 chr7 101126361 101126465 + 0 NA promoter-TSS (NM_000602) promoter-TSS (NM_000602) -676 NM_000602 5054 Hs.414795 NM_000602 ENSG00000106366 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin family E member 1 protein-coding 21714 chr4 113468360 113468547 + 0 NA intron (NM_172129, intron 15 of 17) intron (NM_172129, intron 15 of 17) 293474 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 4965 chr11 18634318 18634422 + 0 NA 5' UTR (NM_194285, exon 1 of 6) 5' UTR (NM_194285, exon 1 of 6) 103 NM_194285 144108 Hs.738650 NM_194285 ENSG00000179119 SPTY2D1 Spt2 SPT2 chromatin protein domain containing 1 protein-coding 2379 chr1 201704146 201704242 + 0 NA intron (NR_046696, intron 2 of 2) intron (NR_046696, intron 2 of 2) -15314 NR_049823 100847050 NR_049823 ENSG00000264802 MIR5191 - microRNA 5191 ncRNA 727 chr1 41955538 41955675 + 0 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -36781 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 9147 chr14 61388704 61388808 + 0 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 67313 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 24516 chr6 39203939 39204096 + 0 NA intron (NM_003740, intron 1 of 4) intron (NM_003740, intron 1 of 4) 25458 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 16306 chr2 128967869 128967960 + 0 NA Intergenic Intergenic 103314 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 10483 chr15 76905307 76905501 + 0 NA Intergenic CpG -21528 NM_020843 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 8196 chr13 44301163 44301240 + 0 NA Intergenic Intergenic -72449 NM_001346980 387923 Hs.377972 NM_001010897 ENSG00000151778 SERP2 C13orf21|bA269C23.1 stress associated endoplasmic reticulum protein family member 2 protein-coding 2619 chr1 211925189 211925293 + 0 NA Intergenic Intergenic 94280 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LOC102723727 - uncharacterized LOC102723727 ncRNA 27362 chr8 9045255 9045413 + 0 NA Intergenic Intergenic -3111 NR_039804 100616350 NR_039804 ENSG00000263407 MIR4660 - microRNA 4660 ncRNA 17361 chr2 238256701 238256799 + 0 NA intron (NM_022817, intron 17 of 22) intron (NM_022817, intron 17 of 22) -16626 NM_001282434 55502 Hs.42949 NM_018645 ENSG00000144485 HES6 C-HAIRY1|HES-6|bHLHb41|bHLHc23 hes family bHLH transcription factor 6 protein-coding 15503 chr2 47069658 47069813 + 0 NA intron (NM_020458, intron 19 of 19) intron (NM_020458, intron 19 of 19) 85643 NM_173649 285051 Hs.531575 NM_173649 ENSG00000239605 C2orf61 - chromosome 2 open reading frame 61 protein-coding 22458 chr5 42950700 42950844 + 0 NA Intergenic Intergenic 42561 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 27944 chr8 63391424 63391555 + 0 NA Intergenic Intergenic -74360 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 21863 chr4 145195774 145195878 + 0 NA Intergenic Intergenic -16146 NM_001102653 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 19634 chr3 66501095 66501231 + 0 NA promoter-TSS (NM_015541) promoter-TSS (NM_015541) -742 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 10208 chr15 59622399 59622531 + 0 NA Intergenic Intergenic 10682 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 14987 chr2 10120356 10120441 + 0 NA Intergenic CpG -2170 NM_001165931 6241 Hs.226390 NM_001034 ENSG00000171848 RRM2 R2|RR2|RR2M ribonucleotide reductase regulatory subunit M2 protein-coding 6720 chr12 19482888 19482896 + 0 NA intron (NM_001267043, intron 3 of 8) L1PB2|LINE|L1 42311 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 10696 chr15 90352315 90352413 + 0 NA 5' UTR (NM_001004309, exon 1 of 4) 5' UTR (NM_001004309, exon 1 of 4) 119 NM_001004309 342132 Hs.55307 NM_001004309 ENSG00000196391 ZNF774 - zinc finger protein 774 protein-coding 1127 chr1 74652918 74653046 + 0 NA intron (NM_001002912, intron 1 of 14) intron (NM_001002912, intron 1 of 14) 20756 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 4237 chr10 101588153 101588284 + 0 NA promoter-TSS (NM_001174084) promoter-TSS (NM_001174084) 52 NM_001308382 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 14060 chr19 9835128 9835267 + 0 NA promoter-TSS (NR_038422) promoter-TSS (NR_038422) -10 NM_006221 5300 Hs.465849 NM_006221 ENSG00000127445 PIN1 DOD|UBL5 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 protein-coding 10018 chr15 45162867 45163016 + 0 NA intron (NM_017434, intron 32 of 34) intron (NM_017434, intron 32 of 34) 18266 NM_001301171 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 4415 chr10 114918410 114918463 + 0 NA Intergenic Intergenic -19757 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 22588 chr5 59317501 59317652 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 39325 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 9946 chr15 40874202 40874306 + 0 NA promoter-TSS (NM_133639) promoter-TSS (NM_133639) 35 NM_133639 171177 Hs.447901 NM_133639 ENSG00000104140 RHOV ARHV|CHP|WRCH2 ras homolog family member V protein-coding 2222 chr1 184388508 184388612 + 0 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 1544 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 24449 chr6 35468285 35468452 + 0 NA promoter-TSS (NM_007104) promoter-TSS (NM_007104) -33 NM_007104 4736 Hs.148340 NM_007104 ENSG00000198755 RPL10A CSA19|Csa-19|L10A|NEDD6 ribosomal protein L10a protein-coding 5915 chr11 96037600 96037770 + 0 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -113478 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 20524 chr3 159191593 159191763 + 0 NA intron (NM_001197100, intron 1 of 3) intron (NM_001197100, intron 1 of 3) -81569 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 6154 chr11 118264449 118264540 + 0 NA promoter-TSS (NM_144765) promoter-TSS (NM_144765) 42 NM_005797 10205 Hs.116651 NM_005797 ENSG00000149573 MPZL2 EVA|EVA1 myelin protein zero like 2 protein-coding 3460 chr10 25113377 25113522 + 0 NA non-coding (NR_120649, exon 1 of 8) non-coding (NR_120649, exon 1 of 8) 391 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 28461 chr8 116788499 116788598 + 0 NA Intergenic Intergenic 22045 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23, small subunit processome component protein-coding 10404 chr15 71791306 71791318 + 0 NA Intergenic Intergenic -19236 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 25786 chr7 19519414 19519514 + 0 NA Intergenic Intergenic 185972 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 5376 chr11 62653306 62653451 + 0 NA promoter-TSS (NM_030628) promoter-TSS (NM_030628) -76 NM_030628 80789 Hs.458390 NM_030628 ENSG00000185085 INTS5 INT5|KIAA1698 integrator complex subunit 5 protein-coding 12672 chr17 50423905 50424003 + 0 NA Intergenic Intergenic -2204 NM_001288968 80221 Hs.288959 NM_025149 ENSG00000167107 ACSF2 ACSMW|AVYV493 acyl-CoA synthetase family member 2 protein-coding 25124 chr6 126955762 126955866 + 0 NA Intergenic Intergenic -163089 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 26304 chr7 55074028 55074168 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -35719 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 27619 chr8 28609124 28609228 + 0 NA Intergenic L2a|LINE|L2 78726 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 9527 chr14 89214325 89214415 + 0 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 202740 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 26591 chr7 92448022 92448126 + 0 NA intron (NM_021167, intron 1 of 4) intron (NM_021167, intron 1 of 4) 626 NR_052016 57798 Hs.21145 NM_021167 ENSG00000157259 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 14696 chr19 49640635 49640640 + 0 NA promoter-TSS (NM_006270) promoter-TSS (NM_006270) -494 NM_006270 6237 Hs.515536 NM_006270 ENSG00000126458 RRAS - related RAS viral (r-ras) oncogene homolog protein-coding 3151 chr1 247372896 247373000 + 0 NA Intergenic Intergenic -41008 NM_032752 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 27123 chr7 140924954 140925119 + 0 NA promoter-TSS (NM_004333) promoter-TSS (NM_004333) -272 NM_004333 673 Hs.550061 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 27290 chr7 158403401 158403445 + 0 NA intron (NM_130842, intron 1 of 21) intron (NM_130842, intron 1 of 21) 129390 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 10973 chr16 5098541 5098692 + 0 NA promoter-TSS (NM_001289029) promoter-TSS (NM_001289029) -796 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 3061 chr1 239879577 239879681 + 0 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 20243 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 28773 chr8 141041621 141041733 + 0 NA Intergenic Intergenic -40364 NM_001316342 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 18131 chr20 47360879 47360921 + 0 NA Intergenic Intergenic -4011 NM_183048 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 1003 chr1 63367425 63367540 + 0 NA promoter-TSS (NM_013339) promoter-TSS (NM_013339) -108 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6, alpha-1,3-glucosyltransferase protein-coding 14838 chr19 57280375 57280517 + 0 NA promoter-TSS (NR_136529) promoter-TSS (NR_136529) -39 NM_006635 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 6055 chr11 110971277 110971316 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR -258107 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 16400 chr2 142596934 142596984 + 0 NA Intergenic L1MA5|LINE|L1 -280667 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 14868 chr19 58362673 58362685 + 0 NA promoter-TSS (NR_136527) promoter-TSS (NR_136527) 53 NR_136527 105372483 Hs.616656 NR_136527 ENSG00000269054 LOC105372483 - uncharacterized LOC105372483 ncRNA 26484 chr7 79710256 79710360 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 256348 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 4230 chr10 101095587 101095740 + 0 NA intron (NR_130722, intron 2 of 2) intron (NR_130722, intron 2 of 2) 29364 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 21077 chr3 197507244 197507348 + 0 NA Intergenic Intergenic 48691 NM_004051 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 13778 chr18 74292004 74292152 + 0 NA promoter-TSS (NM_148923) promoter-TSS (NM_148923) -62 NM_001190807 1528 Hs.465413 NM_001914 ENSG00000166347 CYB5A CYB5|MCB5 cytochrome b5 type A protein-coding 2557 chr1 209370747 209370896 + 0 NA Intergenic Intergenic 45365 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 22056 chr4 178632497 178632601 + 0 NA Intergenic Intergenic -724613 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 14523 chr19 44401502 44401717 + 0 NA promoter-TSS (NM_001291491) promoter-TSS (NM_001291491) 2 NM_001291488 26974 Hs.709428 NM_152354 ENSG00000267508 ZNF285 ZNF285A zinc finger protein 285 protein-coding 12899 chr17 68328779 68328883 + 0 NA intron (NM_001267727, intron 2 of 11) intron (NM_001267727, intron 2 of 11) 37336 NM_001267727 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG - arylsulfatase G protein-coding 21014 chr3 194158908 194159073 + 0 NA Intergenic Intergenic 22848 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 7067 chr12 53451861 53452052 + 0 NA promoter-TSS (NM_001098620) promoter-TSS (NM_001098620) -146 NM_001128914 5094 Hs.546271 NM_005016 ENSG00000197111 PCBP2 HNRNPE2|HNRPE2|hnRNP-E2 poly(rC) binding protein 2 protein-coding 15819 chr2 74178911 74179028 + 0 NA promoter-TSS (NM_001317111) promoter-TSS (NM_001317111) -2 NM_001317110 55233 Hs.602092 NM_018221 ENSG00000114978 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 12769 chr17 58184460 58184630 + 0 NA Intergenic Intergenic -8179 NM_000502 8288 Hs.279259 NM_000502 ENSG00000121053 EPX EPO|EPP|EPX-PEN|EPXD eosinophil peroxidase protein-coding 14831 chr19 56315108 56315244 + 0 NA promoter-TSS (NM_001322076) promoter-TSS (NM_001322076) -249 NM_001322074 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 24301 chr6 29749012 29749116 + 0 NA promoter-TSS (NR_026972) promoter-TSS (NR_026972) -15 NR_026972 285830 Hs.646985 NM_001003807 ENSG00000214922 HLA-F-AS1 - HLA-F antisense RNA 1 ncRNA 13835 chr19 572306 572419 + 0 NA promoter-TSS (NM_001322243) promoter-TSS (NM_001322243) -92 NM_001728 682 Hs.501293 NM_001728 ENSG00000172270 BSG 5F7|CD147|EMMPRIN|OK|TCSF basigin (Ok blood group) protein-coding 8931 chr14 44961979 44962071 + 0 NA promoter-TSS (NM_001308112) promoter-TSS (NM_001308112) -49 NM_017658 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 29659 chr9 98056645 98056792 + 0 NA promoter-TSS (NM_018946) promoter-TSS (NM_018946) 41 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 22437 chr5 40688247 40688382 + 0 NA intron (NM_000958, intron 2 of 2) intron (NM_000958, intron 2 of 2) 8384 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 12880 chr17 66676492 66676666 + 0 NA intron (NM_002737, intron 5 of 16) intron (NM_002737, intron 5 of 16) -110493 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 3277 chr10 11552436 11552483 + 0 NA intron (NM_014688, intron 2 of 14) intron (NM_014688, intron 2 of 14) -20179 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 6015 chr11 107493267 107493346 + 0 NA Intergenic Intergenic -35460 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19-like 2, cell cycle control (S. pombe) protein-coding 15248 chr2 27761585 27761689 + 0 NA Intergenic Intergenic -10080 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 16762 chr2 181457246 181457399 + 0 NA 5' UTR (NM_000885, exon 1 of 28) 5' UTR (NM_000885, exon 1 of 28) 430 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 9582 chr14 93184928 93185059 + 0 NA promoter-TSS (NM_015676) promoter-TSS (NM_015676) -37 NM_001098621 26175 Hs.275352 NM_015676 ENSG00000153485 TMEM251 C14orf109 transmembrane protein 251 protein-coding 1433 chr1 106998570 106998674 + 0 NA Intergenic MER70A|LTR|ERVL -58023 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 8919 chr14 39174924 39175026 + 0 NA promoter-TSS (NM_002687) promoter-TSS (NM_002687) -208 NM_002687 5411 Hs.409965 NM_002687 ENSG00000100941 PNN DRS|DRSP|SDK3|memA pinin, desmosome associated protein protein-coding 1666 chr1 149887976 149888128 + 0 NA promoter-TSS (NM_175065) promoter-TSS (NM_175065) -136 NM_175065 317772 Hs.664173 NM_175065 ENSG00000184270 HIST2H2AB H2AB histone cluster 2 H2A family member b protein-coding 6477 chr12 4998011 4998115 + 0 NA Intergenic Intergenic -45856 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 16327 chr2 131017329 131017410 + 0 NA intron (NM_032995, intron 3 of 11) intron (NM_032995, intron 3 of 11) 75589 NM_001321748 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 30573 chrX 23907927 23908031 + 0 NA promoter-TSS (NM_024122) promoter-TSS (NM_024122) -27 NM_001169574 254158 Hs.351265 NM_152761 ENSG00000165182 CXorf58 - chromosome X open reading frame 58 protein-coding 10535 chr15 80424468 80424572 + 0 NA intron (NM_014862, intron 1 of 18) intron (NM_014862, intron 1 of 18) 20170 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 29709 chr9 100739395 100739461 + 0 NA Intergenic L1PB1|LINE|L1 161349 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 MURC CAVIN4|cavin-4 muscle related coiled-coil protein protein-coding 19722 chr3 98013874 98014021 + 0 NA intron (NR_047685, intron 4 of 9) intron (NR_047685, intron 4 of 9) 21357 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 3740 chr10 60611494 60611598 + 0 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -38590 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 2628 chr1 212285089 212285234 + 0 NA promoter-TSS (NR_125984) promoter-TSS (NR_125984) -140 NR_125984 101929541 Hs.632493 NR_125982 ENSG00000226251 LOC101929541 - uncharacterized LOC101929541 ncRNA 2470 chr1 204752034 204752138 + 0 NA Intergenic MER52C|LTR|ERV1 -66617 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 22410 chr5 39198218 39198322 + 0 NA intron (NM_001243093, intron 2 of 18) MIRb|SINE|MIR 21308 NM_199335 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 14621 chr19 47581747 47581889 + 0 NA Intergenic Intergenic -25962 NM_001277075 84215 Hs.14161 NM_032255 ENSG00000118156 ZNF541 - zinc finger protein 541 protein-coding 7044 chr12 52926485 52926589 + 0 NA promoter-TSS (NM_001256282) promoter-TSS (NM_001256282) -68 NM_001256282 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 30951 chrX 108091670 108091774 + 0 NA promoter-TSS (NM_001321290) promoter-TSS (NM_001321290) 55 NM_001321288 115201 Hs.8763 NM_052936 ENSG00000101844 ATG4A APG4A|AUTL2 autophagy related 4A cysteine peptidase protein-coding 24669 chr6 49463228 49463384 + 0 NA promoter-TSS (NM_000255) promoter-TSS (NM_000255) 22 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MUT MCM methylmalonyl-CoA mutase protein-coding 2251 chr1 187244812 187244916 + 0 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 152022 NR_126347 104169671 NR_126347 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 19764 chr3 100492408 100492533 + 0 NA promoter-TSS (NM_018004) promoter-TSS (NM_018004) -149 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 11578 chr16 70523481 70523585 + 0 NA promoter-TSS (NM_001195139) promoter-TSS (NM_001195139) 21 NM_015386 25839 Hs.208680 NM_015386 ENSG00000103051 COG4 CDG2J|COD1 component of oligomeric golgi complex 4 protein-coding 24594 chr6 43496463 43496546 + 0 NA intron (NM_001146017, intron 1 of 9) intron (NM_001146017, intron 1 of 9) 6920 NM_001146017 93643 Hs.520145 NM_080604 ENSG00000137221 TJAP1 PILT|TJP4 tight junction associated protein 1 protein-coding 22513 chr5 52989232 52989336 + 0 NA promoter-TSS (NM_002203) promoter-TSS (NM_002203) -42 NM_002203 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 8304 chr13 52926062 52926228 + 0 NA Intergenic Intergenic -77505 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 14408 chr19 38264507 38264639 + 0 NA 5' UTR (NM_021102, exon 1 of 7) 5' UTR (NM_021102, exon 1 of 7) 115 NM_021102 10653 Hs.31439 NM_021102 ENSG00000167642 SPINT2 DIAR3|HAI-2|HAI2|Kop|PB serine peptidase inhibitor, Kunitz type 2 protein-coding 5854 chr11 93476934 93476966 + 0 NA Intergenic MIR|SINE|MIR 66430 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 26335 chr7 65006632 65006808 + 0 NA promoter-TSS (NM_001007253) promoter-TSS (NM_001007253) 26 NM_001007253 2086 Hs.250693 NM_001007253 ENSG00000213462 ERV3-1 ERV-R|ERV3|ERVR|HERV-R|HERVR|envR endogenous retrovirus group 3 member 1 protein-coding 12779 chr17 58632025 58632129 + 0 NA intron (NM_198393, intron 2 of 32) intron (NM_198393, intron 2 of 32) 59978 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113 testis expressed 14, intercellular bridge forming factor protein-coding 20993 chr3 193335229 193335312 + 0 NA intron (NM_198505, intron 9 of 29) intron (NM_198505, intron 9 of 29) 28026 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 15267 chr2 28614208 28614283 + 0 NA intron (NR_138141, intron 22 of 35) intron (NR_138141, intron 22 of 35) 47888 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 564 chr1 32817408 32817540 + 0 NA promoter-TSS (NM_001256121) promoter-TSS (NM_001256121) 32 NM_001256121 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 27726 chr8 40205180 40205284 + 0 NA Intergenic LTR72B|LTR|ERV1 51764 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 24331 chr6 30647124 30647278 + 0 NA TTS (NR_033823) TTS (NR_033823) 162 NM_001161376 221545 Hs.591787 NM_145029 ENSG00000204564 C6orf136 - chromosome 6 open reading frame 136 protein-coding 6599 chr12 10722002 10722172 + 0 NA intron (NM_001145426, intron 1 of 8) intron (NM_001145426, intron 1 of 8) 1267 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 7359 chr12 85823834 85823950 + 0 NA intron (NM_005447, intron 1 of 1) MLT1H|LTR|ERVL-MaLR 12648 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 25241 chr6 142013418 142013522 + 0 NA Intergenic L4_A_Mam|LINE|RTE-X 75329 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 21955 chr4 158874111 158874257 + 0 NA intron (NM_001346043, intron 13 of 15) MIRb|SINE|MIR 68090 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 6294 chr11 125968407 125968511 + 0 NA intron (NM_016952, intron 18 of 19) intron (NM_016952, intron 18 of 19) 64093 NM_013264 29118 Hs.420263 NM_013264 ENSG00000109832 DDX25 GRTH DEAD-box helicase 25 protein-coding 1967 chr1 164602131 164602293 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 42852 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 7611 chr12 107918322 107918476 + 0 NA Intergenic Intergenic -14628 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 30127 chr9 126804828 126805007 + 0 NA promoter-TSS (NM_001135776) promoter-TSS (NM_001135776) -89 NM_014007 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 11000 chr16 10578702 10578745 + 0 NA intron (NM_001424, intron 1 of 4) intron (NM_001424, intron 1 of 4) 1993 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 22679 chr5 69166995 69167146 + 0 NA promoter-TSS (NM_031966) promoter-TSS (NM_031966) 60 NM_031966 891 Hs.23960 NM_031966 ENSG00000134057 CCNB1 CCNB cyclin B1 protein-coding 9412 chr14 76904967 76905198 + 0 NA Intergenic MIRb|SINE|MIR -54556 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 28524 chr8 120084606 120084758 + 0 NA Intergenic Intergenic -40426 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 10099 chr15 51875476 51875553 + 0 NA intron (NM_014547, intron 3 of 9) intron (NM_014547, intron 3 of 9) 45886 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 5383 chr11 62754155 62754311 + 0 NA promoter-TSS (NM_024784) promoter-TSS (NM_024784) -49 NM_024784 79842 Hs.147554 NM_024784 ENSG00000185670 ZBTB3 - zinc finger and BTB domain containing 3 protein-coding 10825 chr15 101359069 101359209 + 0 NA intron (NM_138323, intron 13 of 13) intron (NM_138323, intron 13 of 13) 24702 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 1483 chr1 109893091 109893195 + 0 NA Intergenic MIRb|SINE|MIR -17468 NM_000757 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 29368 chr9 82332260 82332364 + 0 NA Intergenic Intergenic 343540 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 10667 chr15 89498391 89498397 + 0 NA Intergenic L1M5|LINE|L1 -1781 NR_110261 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 25586 chr7 4745140 4745282 + 0 NA intron (NM_001037165, intron 2 of 8) CpG -30420 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 zeta 1 subunit protein-coding 30079 chr9 123930013 123930150 + 0 NA promoter-TSS (NM_020946) promoter-TSS (NM_020946) 57 NM_020946 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 24473 chr6 36691151 36691255 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -6648 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 11522 chr16 68234221 68234295 + 0 NA promoter-TSS (NR_106831) promoter-TSS (NR_106831) -759 NR_106831 102466194 NR_106831 ENSG00000103067 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 9514 chr14 88775476 88775566 + 0 NA intron (NM_183387, intron 1 of 42) L1M1|LINE|L1 17231 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2 echinoderm microtubule associated protein like 5 protein-coding 26384 chr7 72326495 72326596 + 0 NA intron (NM_031468, intron 2 of 6) intron (NM_031468, intron 2 of 6) 10678 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 26641 chr7 96547743 96547805 + 0 NA Intergenic Intergenic -44251 NM_001201451 401388 Hs.734935 NM_207503 ENSG00000127922 C7orf76 - chromosome 7 open reading frame 76 protein-coding 10386 chr15 70853910 70854006 + 0 NA promoter-TSS (NM_001286679) promoter-TSS (NM_001286679) 307 NM_018357 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 26043 chr7 35537502 35537677 + 0 NA Intergenic CpG 157573 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 24065 chr6 13383691 13383843 + 0 NA intron (NM_018988, intron 1 of 1) MER57E1|LTR|ERV1 24370 NM_001242630 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 8965 chr14 50001178 50001299 + 0 NA non-coding (NR_126500, exon 3 of 3) non-coding (NR_126500, exon 3 of 3) 5281 NR_126496 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 12912 chr17 69702208 69702312 + 0 NA intron (NR_109972, intron 3 of 4) MER44B|DNA|TcMar-Tigger 108273 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 28603 chr8 125606526 125606677 + 0 NA Intergenic L2b|LINE|L2 174392 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 30269 chr9 131125451 131125605 + 0 NA promoter-TSS (NM_005085) promoter-TSS (NM_005085) -33 NM_005085 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 28097 chr8 81111672 81111776 + 0 NA 5' UTR (NM_018440, exon 1 of 9) 5' UTR (NM_018440, exon 1 of 9) 344 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 15489 chr2 46698983 46699103 + 0 NA promoter-TSS (NM_014011) promoter-TSS (NM_014011) 83 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 9436 chr14 77622724 77622851 + 0 NA Intergenic Intergenic -6020 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 14558 chr19 45455831 45455935 + 0 NA Intergenic Intergenic -12112 NM_001114171 2354 Hs.590958 NM_006732 ENSG00000125740 FOSB AP-1|G0S3|GOS3|GOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding 5781 chr11 85890196 85890300 + 0 NA intron (NM_001286159, intron 5 of 10) LTR78|LTR|ERV1 35147 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9 coiled-coil domain containing 83 protein-coding 28961 chr9 19397913 19398062 + 0 NA Intergenic Intergenic -10940 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 27140 chr7 142459623 142459762 + 0 NA Intergenic Intergenic -187443 NR_036483 207147 Hs.604069 NR_036483 ENSG00000186163 TRY2P - trypsinogen-like pseudogene pseudo 27851 chr8 54153445 54153514 + 0 NA Intergenic Intergenic 18258 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 25222 chr6 138817982 138818127 + 0 NA intron (NM_001195037, intron 3 of 20) intron (NM_001195037, intron 3 of 20) 21943 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 10658 chr15 89121557 89121731 + 0 NA intron (NM_152924, intron 3 of 10) intron (NM_152924, intron 3 of 10) 33494 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 28573 chr8 123541224 123541296 + 0 NA promoter-TSS (NM_001242463) promoter-TSS (NM_001242463) -7 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 6956 chr12 48865825 48865932 + 0 NA promoter-TSS (NM_014470) promoter-TSS (NM_014470) -8 NM_014470 27289 Hs.124940 NM_014470 ENSG00000172602 RND1 ARHS|RHO6|RHOS Rho family GTPase 1 protein-coding 25117 chr6 125956684 125956788 + 0 NA promoter-TSS (NM_138571) promoter-TSS (NM_138571) 21 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 22072 chr4 182975936 182976040 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -58511 NM_001012732 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 24198 chr6 24743416 24743505 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -24285 NM_030939 81688 Hs.744857 NM_030939 ENSG00000112308 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 21241 chr4 22501488 22501592 + 0 NA intron (NM_145290, intron 1 of 18) intron (NM_145290, intron 1 of 18) 14514 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 20383 chr3 149813084 149813194 + 0 NA 5' UTR (NM_007282, exon 1 of 11) 5' UTR (NM_007282, exon 1 of 11) 451 NM_183381 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 RZF ring finger protein 13 protein-coding 3253 chr10 6299314 6299453 + 0 NA Intergenic Intergenic -27161 NR_040079 399715 NR_040079 ENSG00000215244 LOC399715 - uncharacterized LOC399715 ncRNA 11418 chr16 57245165 57245269 + 0 NA promoter-TSS (NM_012106) promoter-TSS (NM_012106) 91 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 22654 chr5 66882719 66882878 + 0 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 54022 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 2389 chr1 201983147 201983201 + 0 NA promoter-TSS (NM_001319182) promoter-TSS (NM_001319182) -156 NM_001319182 6051 Hs.497391 NM_020216 ENSG00000176393 RNPEP AP-B arginyl aminopeptidase protein-coding 4497 chr10 120511248 120511352 + 0 NA intron (NM_001318169, intron 2 of 2) intron (NM_001318169, intron 2 of 2) 54346 NM_001318169 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 6452 chr12 2877160 2877294 + 0 NA promoter-TSS (NM_021953) promoter-TSS (NM_021953) 28 NM_001252500 83695 Hs.198853 NM_001252499 ENSG00000171792 RHNO1 C12orf32|HKMT1188|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 26509 chr7 83469290 83469394 + 0 NA intron (NM_012431, intron 2 of 16) intron (NM_012431, intron 2 of 16) 172089 NM_001178129 9723 Hs.528721 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 8019 chr13 27425985 27426131 + 0 NA intron (NM_002097, intron 1 of 8) intron (NM_002097, intron 1 of 8) 1514 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 11044 chr16 14498179 14498283 + 0 NA intron (NM_001242992, intron 20 of 22).2 intron (NM_001242992, intron 20 of 22).2 -127965 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 122 chr1 8878675 8878761 + 0 NA promoter-TSS (NR_038351) promoter-TSS (NR_038351) -117 NR_038351 100505975 Hs.429843 NR_038351 ENSG00000230679 ENO1-AS1 - ENO1 antisense RNA 1 ncRNA 5783 chr11 86069835 86069995 + 0 NA promoter-TSS (NM_007166) promoter-TSS (NM_007166) -34 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 14292 chr19 19377910 19377990 + 0 NA Intergenic Intergenic -7883 NM_017660 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 9589 chr14 93959522 93959671 + 0 NA intron (NM_001202429, intron 2 of 9) intron (NM_001202429, intron 2 of 9) -2175 NM_016150 51676 Hs.510327 NM_016150 ENSG00000100628 ASB2 ASB-2 ankyrin repeat and SOCS box containing 2 protein-coding 878 chr1 52703004 52703108 + 0 NA Intergenic Intergenic -4690 NM_023077 65260 Hs.349905 NM_023077 ENSG00000162377 COA7 C1orf163|RESA1|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 5421 chr11 63999424 63999578 + 0 NA intron (NM_014067, intron 7 of 10) CpG 13648 NM_017670 55611 Hs.473788 NM_017670 ENSG00000167770 OTUB1 HSPC263|OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 18170 chr20 49915734 49915838 + 0 NA promoter-TSS (NM_006038) promoter-TSS (NM_006038) -36 NR_134564 105372653 Hs.589895 NR_134564 LOC105372653 - uncharacterized LOC105372653 ncRNA 26032 chr7 34357233 34357337 + 0 NA intron (NR_033665, intron 3 of 3) intron (NR_033665, intron 3 of 3) -300954 NM_001300934 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 12002 chr17 6422262 6422281 + 0 NA Intergenic Intergenic 12861 NM_001285402 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 3198 chr10 3852474 3852556 + 0 NA Intergenic Intergenic 18565 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 3215 chr10 4847821 4847959 + 0 NA non-coding (NR_073125, exon 10 of 10) non-coding (NR_073125, exon 10 of 10) 21713 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 15909 chr2 85577488 85577592 + 0 NA promoter-TSS (NM_003761) promoter-TSS (NM_003761) 49 NM_003761 8673 Hs.714302 NM_003761 ENSG00000118640 VAMP8 EDB|VAMP-8 vesicle associated membrane protein 8 protein-coding 14551 chr19 45405747 45405851 + 0 NA promoter-TSS (NM_001297590) promoter-TSS (NM_001297590) -410 NM_001297590 10849 Hs.710495 NM_012099 ENSG00000117877 CD3EAP ASE-1|ASE1|CAST|PAF49 CD3e molecule associated protein protein-coding 8464 chr13 97141714 97141825 + 0 NA Intergenic Intergenic 37853 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 6687 chr12 15789292 15789396 + 0 NA 5' UTR (NM_004447, exon 1 of 21) 5' UTR (NM_004447, exon 1 of 21) 232 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 16335 chr2 132268561 132268690 + 0 NA Intergenic Intergenic -10656 NR_027020 554226 Hs.380689 NR_027019 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B like pseudo 17831 chr20 31106740 31106891 + 0 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -150849 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 2159 chr1 181022801 181022973 + 0 NA 5' UTR (NM_001286210, exon 1 of 6) 5' UTR (NM_001286210, exon 1 of 6) 234 NM_005819 10228 Hs.518417 NM_005819 ENSG00000135823 STX6 - syntaxin 6 protein-coding 6161 chr11 118435948 118435989 + 0 NA promoter-TSS (NM_001197104) promoter-TSS (NM_001197104) -522 NM_001197104 4297 Hs.258855 NM_005933 ENSG00000118058 KMT2A ALL-1|CXXC7|HRX|HTRX1|MLL|MLL-AF9|MLL/GAS7|MLL1|MLL1A|TET1-MLL|TRX1|WDSTS lysine methyltransferase 2A protein-coding 18666 chr22 21556091 21556286 + 0 NA intron (NM_001256355, intron 1 of 3) AluJb|SINE|Alu -4727 NM_001128633 150221 Hs.447643 NM_001128633 ENSG00000183246 RIMBP3C RIM-BP3.3|RIMBP3.3 RIMS binding protein 3C protein-coding 13726 chr18 63970518 63970622 + 0 NA intron (NM_198833, intron 1 of 6) CpG 541 NM_198833 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 CAP2|PI8|PSS5 serpin family B member 8 protein-coding 14378 chr19 35717552 35717658 + 0 NA promoter-TSS (NM_014727) promoter-TSS (NM_014727) -414 NM_014727 9757 Hs.92236 NM_014727 ENSG00000272333 KMT2B CXXC10|HRX2|MLL1B|MLL2|MLL4|TRX2|WBP-7|WBP7 lysine methyltransferase 2B protein-coding 11564 chr16 69530793 69530911 + 0 NA Intergenic Intergenic 35016 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 9393 chr14 75375010 75375114 + 0 NA Intergenic Intergenic -52744 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 25865 chr7 23713324 23713428 + 0 NA intron (NM_032944, intron 3 of 23) Tigger3b|DNA|TcMar-Tigger 3050 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 12192 chr17 19111905 19112056 + 0 NA TTS (NR_006882) TTS (NR_006882) 656 NR_006882 780854 NR_006882 ENSG00000277947 SNORD3D U3-4 small nucleolar RNA, C/D box 3D snoRNA 4834 chr11 12044200 12044228 + 0 NA intron (NR_135109, intron 1 of 1) intron (NR_135109, intron 1 of 1) 13339 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LOC105376554 - uncharacterized LOC105376554 ncRNA 4725 chr11 4493352 4493456 + 0 NA Intergenic LTR13|LTR|ERVK 4525 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 26472 chr7 77834497 77834576 + 0 NA intron (NM_001127358, intron 1 of 17) LTR23|LTR|ERV1 -5594 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 29850 chr9 110283923 110283985 + 0 NA Intergenic Intergenic -27314 NM_001244938 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 12275 chr17 28842739 28842872 + 0 NA promoter-TSS (NM_001077498) promoter-TSS (NM_001077498) 34 NM_001077498 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 4062 chr10 90931183 90931287 + 0 NA Intergenic Intergenic -9960 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 6096 chr11 112613753 112613857 + 0 NA Intergenic Intergenic -58003 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LOC387810 - uncharacterized LOC387810 ncRNA 30921 chrX 106302337 106302521 + 0 NA Intergenic Intergenic 134124 NM_152423 139221 Hs.592221 NM_152423 ENSG00000157502 MUM1L1 - MUM1 like 1 protein-coding 20566 chr3 161349947 161350149 + 0 NA intron (NM_001320679, intron 2 of 3) intron (NM_001320679, intron 2 of 3) 22035 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 16977 chr2 206611894 206611998 + 0 NA intron (NM_003812, intron 25 of 25) intron (NM_003812, intron 25 of 25) -32281 NM_001102659 200726 NM_001102659 ENSG00000235118 LOC200726 - hCG1657980 protein-coding 7629 chr12 109497798 109497950 + 0 NA exon (NM_130466, exon 10 of 28) exon (NM_130466, exon 10 of 28) 20251 NM_183415 89910 Hs.374067 NM_130466 ENSG00000151148 UBE3B BPIDS|KOS ubiquitin protein ligase E3B protein-coding 22435 chr5 40679370 40679410 + 0 NA promoter-TSS (NM_000958) promoter-TSS (NM_000958) -540 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 23568 chr5 154058460 154058564 + 0 NA Intergenic Intergenic 19553 NM_001135037 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibrillar associated protein 3 protein-coding 15106 chr2 17851929 17852033 + 0 NA Intergenic Intergenic -25866 NM_001282428 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 11807 chr16 87017443 87017547 + 0 NA Intergenic MADE1|DNA|TcMar-Mariner -40289 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LOC440390 - uncharacterized LOC440390 ncRNA 26349 chr7 66592332 66592485 + 0 NA promoter-TSS (NR_111973) promoter-TSS (NR_111973) -1 NR_111973 493754 Hs.732409 NR_002933 GS1-124K5.11 - RAB guanine nucleotide exchange factor 1 pseudogene pseudo 13982 chr19 5687089 5687144 + 0 NA intron (NM_198708, intron 4 of 6) CpG-13469 -3145 NM_033643 25873 Hs.408018 NM_015414 ENSG00000130255 RPL36 L36 ribosomal protein L36 protein-coding 27136 chr7 142104974 142105094 + 0 NA intron (NM_004668, intron 47 of 47) intron (NM_004668, intron 47 of 47) -6715 NM_001293626 93432 Hs.647098 NM_001008748 ENSG00000257743 MGAM2 - maltase-glucoamylase 2 (putative) protein-coding 25360 chr6 152575698 152575894 + 0 NA intron (NM_182961, intron 3 of 145) MIRb|SINE|MIR 61055 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 1632 chr1 145859115 145859118 + 0 NA promoter-TSS (NM_006099) promoter-TSS (NM_006099) -35 NM_006099 10401 Hs.435761 NM_006099 ENSG00000131788 PIAS3 ZMIZ5 protein inhibitor of activated STAT 3 protein-coding 8135 chr13 39148649 39148710 + 0 NA Intergenic Intergenic 110368 NR_073109 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 27976 chr8 66902932 66903036 + 0 NA intron (NM_001136160, intron 13 of 13) AluSq2|SINE|Alu 19565 NR_002598 641648 NR_002598 ENSG00000254341 SNORD87 HBII-276|U87 small nucleolar RNA, C/D box 87 snoRNA 3352 chr10 17216378 17216507 + 0 NA intron (NR_108061, intron 1 of 2) intron (NR_108061, intron 1 of 2) 10456 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 14648 chr19 48492859 48492963 + 0 NA intron (NM_001080434, intron 13 of 15) intron (NM_001080434, intron 13 of 15) 20278 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 667 chr1 38873397 38873508 + 0 NA promoter-TSS (NR_135048) promoter-TSS (NR_135048) 51 NR_135048 105378663 Hs.585419 NR_135048 ENSG00000228436 LOC105378663 - uncharacterized LOC105378663 ncRNA 16347 chr2 133641623 133641742 + 0 NA Intergenic Intergenic -73222 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 11021 chr16 11628128 11628306 + 0 NA Intergenic Intergenic -40216 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 1280 chr1 89953380 89953484 + 0 NA Intergenic LTR8B|LTR|ERV1 41534 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 13969 chr19 4914965 4915069 + 0 NA intron (NM_013282, intron 1 of 15) MER20|DNA|hAT-Charlie 4650 NM_001290052 29128 Hs.108106 NM_013282 ENSG00000276043 UHRF1 ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95 ubiquitin like with PHD and ring finger domains 1 protein-coding 313 chr1 20733061 20733165 + 0 NA promoter-TSS (NM_001103160) promoter-TSS (NM_001103160) -473 NM_001103160 400745 Hs.591522 NM_001103160 ENSG00000189410 SH2D5 - SH2 domain containing 5 protein-coding 15780 chr2 71227118 71227200 + 0 NA promoter-TSS (NM_020459) promoter-TSS (NM_020459) -56 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 26781 chr7 106065135 106065154 + 0 NA Intergenic Intergenic 47201 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 20265 chr3 139427672 139427820 + 0 NA intron (NR_121609, intron 3 of 4) intron (NR_121609, intron 3 of 4) 37943 NR_121609 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 13418 chr18 33812404 33812508 + 0 NA Intergenic MSTB2|LTR|ERVL-MaLR 233879 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 13497 chr18 45774438 45774481 + 0 NA Intergenic Intergenic 47506 NM_001146037 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 4322 chr10 106606358 106606462 + 0 NA intron (NM_001013031, intron 23 of 26) intron (NM_001013031, intron 23 of 26) 466245 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LOC105378470 - uncharacterized LOC105378470 ncRNA 25835 chr7 22433695 22433799 + 0 NA intron (NM_207342, intron 4 of 4) intron (NM_207342, intron 4 of 4) 66535 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 3023 chr1 235999580 235999684 + 0 NA intron (NM_002508, intron 12 of 19) intron (NM_002508, intron 12 of 19) 65549 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 27074 chr7 137882298 137882402 + 0 NA intron (NM_194071, intron 11 of 11) intron (NM_194071, intron 11 of 11) -35486 NM_001321710 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 6876 chr12 40690524 40690628 + 0 NA Intergenic Intergenic -1866 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 14881 chr19 58544034 58544195 + 0 NA promoter-TSS (NM_005762) promoter-TSS (NM_005762) -355 NM_005762 10155 Hs.467408 NM_005762 ENSG00000130726 TRIM28 KAP1|PPP1R157|RNF96|TF1B|TIF1B tripartite motif containing 28 protein-coding 7980 chr13 24502843 24503008 + 0 NA intron (NM_006437, intron 2 of 33) intron (NM_006437, intron 2 of 33) 9885 NM_006437 143 Hs.744855 NM_006437 ENSG00000102699 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly(ADP-ribose) polymerase family member 4 protein-coding 24437 chr6 34887960 34888110 + 0 NA promoter-TSS (NM_001270488) promoter-TSS (NM_001270488) 36 NM_001270488 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 23020 chr5 112160734 112160867 + 0 NA promoter-TSS (NR_002922) promoter-TSS (NR_002922) 274 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 21953 chr4 158810847 158811016 + 0 NA intron (NM_001323916, intron 1 of 16) intron (NM_001323916, intron 1 of 16) 4837 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 5712 chr11 78417005 78417109 + 0 NA intron (NM_080491, intron 1 of 9) CpG 765 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 23670 chr5 168086460 168086564 + 0 NA intron (NM_001080428, intron 4 of 24) intron (NM_001080428, intron 4 of 24) 145860 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 27027 chr7 132028661 132028815 + 0 NA Intergenic Intergenic 118518 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 11433 chr16 57797960 57798105 + 0 NA promoter-TSS (NM_001130099) promoter-TSS (NM_001130099) -15 NM_001130099 3801 Hs.23131 NM_005550 ENSG00000140859 KIFC3 - kinesin family member C3 protein-coding 7035 chr12 52799347 52799451 + 0 NA Intergenic Intergenic -3291 NM_057088 3850 Hs.680652 NM_057088 ENSG00000186442 KRT3 CK3|K3 keratin 3 protein-coding 30304 chr9 132944535 132944711 + 0 NA promoter-TSS (NM_001162426) promoter-TSS (NM_001162426) 10 NM_001162426 7248 Hs.370854 NM_000368 ENSG00000165699 TSC1 LAM|TSC tuberous sclerosis 1 protein-coding 25110 chr6 125749544 125749652 + 0 NA promoter-TSS (NM_012259) promoter-TSS (NM_012259) 12 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 3305 chr10 13708799 13708903 + 0 NA intron (NM_018027, intron 12 of 24) intron (NM_018027, intron 12 of 24) -1284 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 6607 chr12 11746190 11746364 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 96423 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 21464 chr4 75990930 75991068 + 0 NA promoter-TSS (NM_001288983) promoter-TSS (NM_001288983) -37 NM_018115 55153 Hs.632604 NM_018115 ENSG00000198301 SDAD1 - SDA1 domain containing 1 protein-coding 21436 chr4 72631447 72631551 + 0 NA Intergenic Intergenic -62700 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 25387 chr6 155782410 155782576 + 0 NA Intergenic MER31B|LTR|ERV1 -164304 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 11200 chr16 29863527 29863681 + 0 NA promoter-TSS (NM_001286585) promoter-TSS (NM_001286585) -79 NR_024370 440356 Hs.448823 NR_015396 ENSG00000214725 CDIPT-AS1 - CDIPT antisense RNA 1 (head to head) ncRNA 5021 chr11 24932469 24932574 + 0 NA intron (NM_001252008, intron 7 of 11) L1PB1|LINE|L1 435551 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 30994 chrX 117996540 117996644 + 0 NA intron (NM_001168303, intron 1 of 6) intron (NM_001168303, intron 1 of 6) -11179 NM_001168299 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 28998 chr9 23826399 23826489 + 0 NA promoter-TSS (NM_004432) promoter-TSS (NM_004432) -379 NM_004432 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 17072 chr2 215619205 215619223 + 0 NA intron (NR_037195, intron 8 of 9) intron (NR_037195, intron 8 of 9) -98829 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 16372 chr2 136236182 136236286 + 0 NA Intergenic Charlie13b|DNA|hAT-Charlie -118079 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 12009 chr17 6567563 6567663 + 0 NA Intergenic Intergenic -11056 NM_031220 83394 Hs.183983 NM_031220 ENSG00000091622 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 20637 chr3 170870233 170870370 + 0 NA promoter-TSS (NM_001320451) promoter-TSS (NM_001320451) -45 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 7182 chr12 58640405 58640509 + 0 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 48755 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 4267 chr10 102769923 102770027 + 0 NA intron (NM_001083913, intron 1 of 3) intron (NM_001083913, intron 1 of 3) -6156 NM_017787 54838 Hs.500897 NM_017787 ENSG00000166272 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1-like protein-coding 7055 chr12 53252073 53252166 + 0 NA promoter-TSS (NM_032889) promoter-TSS (NM_032889) 27 NM_032889 84975 Hs.654660 NM_032889 ENSG00000182544 MFSD5 hsMOT2 major facilitator superfamily domain containing 5 protein-coding 7323 chr12 80045709 80045813 + 0 NA Intergenic Intergenic -110306 NM_001244990 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 8436 chr13 88153487 88153591 + 0 NA intron (NR_131919, intron 1 of 4) MER66B|LTR|ERV1 10672 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LOC105370306 - uncharacterized LOC105370306 ncRNA 12451 chr17 40100684 40100771 + 0 NA promoter-TSS (NM_021724) promoter-TSS (NM_021724) -2 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 28987 chr9 22041976 22042126 + 0 NA intron (NR_047539, intron 3 of 12) intron (NR_047539, intron 3 of 12) -32738 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 21998 chr4 169080049 169080089 + 0 NA Intergenic Intergenic -69752 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 17250 chr2 230617411 230617515 + 0 NA Intergenic AluSx|SINE|Alu 83066 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 3187 chr10 3107751 3107910 + 0 NA intron (NM_001323070, intron 3 of 15) intron (NM_001323070, intron 3 of 15) 3221 NM_001323073 5214 Hs.26010 NM_002627 ENSG00000067057 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 24341 chr6 30752372 30752484 + 0 NA Intergenic Intergenic -7878 NM_003897 8870 Hs.76095 NM_003897 ENSG00000137331 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 13408 chr18 32302087 32302218 + 0 NA intron (NM_022751, intron 3 of 5) MIR3|SINE|MIR 112128 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 20521 chr3 158801956 158802095 + 0 NA promoter-TSS (NM_001167903) promoter-TSS (NM_001167903) 99 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 13337 chr18 23998874 23999075 + 0 NA intron (NR_110796, intron 5 of 5) intron (NR_110796, intron 5 of 5) 6201 NM_153211 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 12532 chr17 42998233 42998318 + 0 NA promoter-TSS (NM_000988) promoter-TSS (NM_000988) -154 NM_000988 6155 Hs.514196 NM_000988 ENSG00000131469 RPL27 L27 ribosomal protein L27 protein-coding 24184 chr6 22881165 22881269 + 0 NA Intergenic Intergenic -163293 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 19919 chr3 113897394 113897559 + 0 NA promoter-TSS (NM_001172105) promoter-TSS (NM_001172105) 5 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 13449 chr18 36321839 36321943 + 0 NA intron (NM_025135, intron 1 of 24) intron (NM_025135, intron 1 of 24) 24195 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 28924 chr9 12784576 12784724 + 0 NA intron (NM_203403, intron 1 of 1) L1MA3|LINE|L1 9637 NM_203403 286343 Hs.445356 NM_203403 ENSG00000153714 LURAP1L C9orf150|HYST0841|LRAP35b|bA3L8.2 leucine rich adaptor protein 1 like protein-coding 27977 chr8 66925463 66925610 + 0 NA promoter-TSS (NR_002599) promoter-TSS (NR_002599) 6 NR_002599 641638 Hs.372680 NR_002599 SNHG6 HBII-276HG|NCRNA00058|U87HG small nucleolar RNA host gene 6 ncRNA 8178 chr13 42106282 42106427 + 0 NA intron (NM_178009, intron 1 of 29) intron (NM_178009, intron 1 of 29) -31688 NM_001297429 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 1938 chr1 161524276 161524402 + 0 NA promoter-TSS (NM_002155) promoter-TSS (NM_002155) -201 NM_002155 3310 Hs.654614 NM_002155 ENSG00000173110 HSPA6 HSP70B' heat shock protein family A (Hsp70) member 6 protein-coding 7654 chr12 110583336 110583490 + 0 NA promoter-TSS (NM_139283) promoter-TSS (NM_139283) -154 NR_138550 160760 Hs.13854 NM_139283 ENSG00000196850 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog protein-coding 24653 chr6 47656348 47656449 + 0 NA promoter-TSS (NM_153839) promoter-TSS (NM_153839) -192 NM_153839 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 24019 chr6 10412267 10412400 + 0 NA promoter-TSS (NR_033910) promoter-TSS (NR_033910) 15 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 25729 chr7 15594524 15594693 + 0 NA Intergenic Intergenic -32593 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 5545 chr11 67118378 67118482 + 0 NA promoter-TSS (NM_012308) promoter-TSS (NM_012308) -839 NM_012308 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 27020 chr7 131327794 131327898 + 0 NA promoter-TSS (NM_013255) promoter-TSS (NM_013255) 10 NM_013255 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 29650 chr9 97714514 97714713 + 0 NA Intergenic Intergenic -17204 NM_000380 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 11955 chr17 4373857 4373937 + 0 NA Intergenic L2a|LINE|L2 -7223 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 26239 chr7 48250412 48250545 + 0 NA intron (NM_152701, intron 15 of 61) MER21C|LTR|ERVL 79018 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 18273 chr20 54267857 54267862 + 0 NA Intergenic Intergenic 59896 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 29154 chr9 70031374 70031523 + 0 NA Intergenic HAL1|LINE|L1 -12133 NR_125850 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 29031 chr9 33076672 33076823 + 0 NA promoter-TSS (NM_018225) promoter-TSS (NM_018225) -31 NM_018225 55234 Hs.655351 NM_018225 ENSG00000122692 SMU1 BWD|SMU-1|fSAP57 DNA replication regulator and spliceosomal factor protein-coding 13993 chr19 6088025 6088181 + 0 NA intron (NM_134433, intron 1 of 16) intron (NM_134433, intron 1 of 16) 22550 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 9390 chr14 75259127 75259287 + 0 NA Intergenic CpG -19571 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 516 chr1 31154770 31154901 + 0 NA Intergenic Intergenic 85052 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C Sodium/potassium transporting ATPase interacting 1 protein-coding 28494 chr8 118621927 118622060 + 0 NA promoter-TSS (NM_207506) promoter-TSS (NM_207506) 2 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 1813 chr1 155250790 155250942 + 0 NA intron (NM_006589, intron 8 of 11) (GCCTG)n|Simple_repeat|Simple_repeat 4617 NM_001267608 10712 Hs.348308 NM_006589 ENSG00000160767 FAM189B C1orf2|COTE1 family with sequence similarity 189 member B protein-coding 23110 chr5 123157838 123157942 + 0 NA intron (NM_001136239, intron 4 of 7) intron (NM_001136239, intron 4 of 7) 68744 NM_001136239 93166 Hs.135118 NM_001136239 ENSG00000061455 PRDM6 KMT8C|PDA3|PRISM PR/SET domain 6 protein-coding 4754 chr11 6683378 6683549 + 0 NA promoter-TSS (NM_022061) promoter-TSS (NM_022061) -62 NM_022061 63875 Hs.523456 NM_022061 ENSG00000158042 MRPL17 L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26 mitochondrial ribosomal protein L17 protein-coding 19028 chr22 46537581 46537659 + 0 NA promoter-TSS (NM_014246) promoter-TSS (NM_014246) -450 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 10613 chr15 85443815 85443994 + 0 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 63288 NM_006738 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 16131 chr2 111659632 111659787 + 0 NA Intergenic MER21C|LTR|ERVL 111425 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 20247 chr3 138626065 138626190 + 0 NA intron (NM_001033032, intron 3 of 4) intron (NM_001033032, intron 3 of 4) 17050 NM_018147 55179 Hs.173438 NM_018147 ENSG00000158234 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 14268 chr19 18438798 18438902 + 0 NA promoter-TSS (NR_045574) promoter-TSS (NR_045574) -549 NM_001170938 51477 Hs.405873 NM_016368 ENSG00000105655 ISYNA1 INO1|INOS|IPS|IPS 1|IPS-1 inositol-3-phosphate synthase 1 protein-coding 29439 chr9 86282648 86282752 + 0 NA promoter-TSS (NM_030940) promoter-TSS (NM_030940) -125 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|hIscA iron-sulfur cluster assembly 1 protein-coding 6799 chr12 27984383 27984578 + 0 NA Intergenic Intergenic -12497 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 26736 chr7 101870934 101871037 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 53383 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 26792 chr7 106661147 106661251 + 0 NA promoter-TSS (NM_175884) promoter-TSS (NM_175884) -11 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 18265 chr20 54067764 54067902 + 0 NA TTS (NR_039913) TTS (NR_039913) 652 NR_039913 100616225 NR_039913 ENSG00000265595 MIR4756 - microRNA 4756 ncRNA 23645 chr5 160345393 160345505 + 0 NA Intergenic Intergenic -5857 NR_131769 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 14131 chr19 12035669 12035746 + 0 NA promoter-TSS (NM_001080411) promoter-TSS (NM_001080411) 34 NM_001308355 163059 Hs.667776 NM_152602 ENSG00000197647 ZNF433 - zinc finger protein 433 protein-coding 23677 chr5 168324941 168325089 + 0 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 32955 NM_001161662 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 15043 chr2 12702847 12702973 + 0 NA Intergenic Intergenic -13962 NR_027303 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 20874 chr3 186806522 186806538 + 0 NA promoter-TSS (NM_002916) promoter-TSS (NM_002916) -29 NM_002916 5984 Hs.732098 NM_002916 ENSG00000163918 RFC4 A1|RFC37 replication factor C subunit 4 protein-coding 15166 chr2 23280547 23280651 + 0 NA Intergenic Intergenic -104828 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 4679 chr11 1060943 1061097 + 0 NA Intergenic Intergenic 11242 NM_001323425 101927503 Hs.436626 NM_001323425 LOC101927503 - uncharacterized LOC101927503 protein-coding 28263 chr8 97869115 97869182 + 0 NA 5' UTR (NM_030583, exon 1 of 19) 5' UTR (NM_030583, exon 1 of 19) 127 NM_001317748 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 13549 chr18 49313058 49313087 + 0 NA intron (NM_017653, intron 8 of 16) MER41A|LTR|ERV1 147637 NM_017653 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 23831 chr5 179907844 179907948 + 0 NA promoter-TSS (NM_015043) promoter-TSS (NM_015043) -40 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 23837 chr5 180333806 180333885 + 0 NA intron (NM_005110, intron 4 of 18) intron (NM_005110, intron 4 of 18) 19542 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 9050 chr14 55103247 55103403 + 0 NA Intergenic Intergenic -25892 NM_001177388 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 26987 chr7 129454227 129454367 + 0 NA intron (NM_020704, intron 6 of 20) intron (NM_020704, intron 6 of 20) 19864 NM_020704 57464 Hs.489988 NM_020704 ENSG00000128578 STRIP2 FAM40B|FAR11B striatin interacting protein 2 protein-coding 22660 chr5 67015978 67016051 + 0 NA intron (NM_001290227, intron 2 of 25) L2c|LINE|L2 11394 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 4472 chr10 119207413 119207534 + 0 NA promoter-TSS (NM_005308) promoter-TSS (NM_005308) -212 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 GPRK5 G protein-coupled receptor kinase 5 protein-coding 7939 chr13 20371210 20371314 + 0 NA Intergenic Intergenic 62584 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 22230 chr5 13478950 13479054 + 0 NA Intergenic Intergenic 465478 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 17266 chr2 231464470 231464610 + 0 NA promoter-TSS (NM_005381) promoter-TSS (NM_005381) -46 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23 nucleolin protein-coding 25759 chr7 17408642 17408746 + 0 NA intron (NR_110015, intron 1 of 2) MLT1E1A|LTR|ERVL-MaLR 33777 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 3181 chr10 2112175 2112279 + 0 NA Intergenic LTR40A1|LTR|ERVL -36138 NR_106720 102465944 NR_106720 ENSG00000278069 MIR6072 hsa-mir-6072 microRNA 6072 ncRNA 27473 chr8 19067751 19067855 + 0 NA Intergenic Intergenic -54117 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 22199 chr5 9546061 9546165 + 0 NA promoter-TSS (NR_045196) promoter-TSS (NR_045196) 8 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 15837 chr2 74690688 74690824 + 0 NA Intergenic Intergenic 36528 NR_073398 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 27325 chr8 6339083 6339256 + 0 NA Intergenic MER61C|LTR|ERV1 67379 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 29739 chr9 105280903 105281008 + 0 NA intron (NM_001286730, intron 1 of 15) intron (NM_001286730, intron 1 of 15) 36342 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 24556 chr6 42239872 42240021 + 0 NA intron (NM_001297573, intron 15 of 17) intron (NM_001297573, intron 15 of 17) -22051 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 12426 chr17 38825306 38825398 + 0 NA promoter-TSS (NM_017748) promoter-TSS (NM_017748) -2 NR_073428 54883 Hs.406223 NM_017748 ENSG00000273559 CWC25 CCDC49 CWC25 spliceosome associated protein homolog protein-coding 25745 chr7 16847466 16847585 + 0 NA Intergenic Intergenic 34464 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 1889 chr1 159091902 159092006 + 0 NA Intergenic Intergenic -15097 NM_004833 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 2692 chr1 216601303 216601407 + 0 NA intron (NM_001243505, intron 3 of 6) CpG 122117 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 28062 chr8 78804312 78804469 + 0 NA intron (NM_000880, intron 1 of 5) intron (NM_000880, intron 1 of 5) 1133 NM_001199888 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 30236 chr9 129642236 129642277 + 0 NA promoter-TSS (NM_177999) promoter-TSS (NM_177999) -87 NM_001202403 140459 Hs.125037 NM_017873 ENSG00000148331 ASB6 - ankyrin repeat and SOCS box containing 6 protein-coding 17528 chr20 5528989 5529131 + 0 NA Intergenic Intergenic -19058 NR_109860 101929207 Hs.516871 NR_109860 ENSG00000225640 LINC01729 - long intergenic non-protein coding RNA 1729 ncRNA 11993 chr17 5584508 5584612 + 0 NA promoter-TSS (NM_001033053) promoter-TSS (NM_001033053) -48 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 24729 chr6 55866208 55866392 + 0 NA intron (NM_021073, intron 1 of 6) intron (NM_021073, intron 1 of 6) 9290 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 4762 chr11 7575887 7576031 + 0 NA intron (NM_003621, intron 3 of 23) intron (NM_003621, intron 3 of 23) -21227 NM_001256568 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 26761 chr7 104499417 104499522 + 0 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 170813 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 lipoma HMGIC fusion partner-like 3 protein-coding 12251 chr17 28041547 28041689 + 0 NA Intergenic CpG -1044 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 30472 chrX 8868610 8868714 + 0 NA Intergenic Intergenic -67279 NM_174951 171482 Hs.382062 NM_174951 ENSG00000183304 FAM9A TEX39A family with sequence similarity 9 member A protein-coding 25623 chr7 6348865 6348971 + 0 NA promoter-TSS (NM_001037163) promoter-TSS (NM_001037163) 41 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000178397 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 5574 chr11 68014770 68014924 + 0 NA intron (NM_001030010, intron 1 of 8) intron (NM_001030010, intron 1 of 8) 4542 NM_001290058 221 Hs.523841 NM_000694 ENSG00000006534 ALDH3B1 ALDH4|ALDH7 aldehyde dehydrogenase 3 family member B1 protein-coding 30570 chrX 23783029 23783190 + 0 NA promoter-TSS (NR_027783) promoter-TSS (NR_027783) -49 NM_002970 6303 Hs.28491 NM_002970 ENSG00000130066 SAT1 DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1 spermidine/spermine N1-acetyltransferase 1 protein-coding 19643 chr3 69080350 69080422 + 0 NA promoter-TSS (NM_003968) promoter-TSS (NM_003968) -13 NM_003968 9039 Hs.154320 NM_003968 ENSG00000144744 UBA3 NAE2|UBE1C|hUBA3 ubiquitin like modifier activating enzyme 3 protein-coding 22791 chr5 80654638 80654787 + 0 NA promoter-TSS (NM_002439) promoter-TSS (NM_002439) 64 NM_002439 4437 Hs.280987 NM_002439 ENSG00000113318 MSH3 DUP|FAP4|MRP1 mutS homolog 3 protein-coding 17806 chr20 25000402 25000507 + 0 NA Intergenic Intergenic -7665 NM_020531 57136 Hs.472330 NM_020531 ENSG00000101474 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 7666 chr12 112112554 112112650 + 0 NA Intergenic Intergenic -3771 NM_024953 80018 Hs.530941 NM_024953 ENSG00000111300 NAA25 C12orf30|MDM20|NAP1 N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding 18292 chr20 56554990 56555072 + 0 NA Intergenic Intergenic 21785 NM_001013646 388799 Hs.287759 NM_001013646 ENSG00000213714 FAM209B C20orf107|dJ1153D9.4 family with sequence similarity 209 member B protein-coding 12536 chr17 43211782 43211886 + 0 NA promoter-TSS (NM_001291586) promoter-TSS (NM_001291586) 7 NM_145041 113277 Hs.536474 NM_145041 ENSG00000184988 TMEM106A - transmembrane protein 106A protein-coding 13278 chr18 12377277 12377380 + 0 NA promoter-TSS (NM_006796) promoter-TSS (NM_006796) -52 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 10839 chr16 353157 353261 + 0 NA promoter-TSS (NM_003502) promoter-TSS (NM_003502) -533 NM_181050 8312 Hs.592082 NM_003502 ENSG00000103126 AXIN1 AXIN|PPP1R49 axin 1 protein-coding 19278 chr3 27217198 27217234 + 0 NA promoter-TSS (NM_001031741) promoter-TSS (NM_001031741) -693 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 27927 chr8 61591625 61591729 + 0 NA intron (NM_004318, intron 14 of 24) intron (NM_004318, intron 14 of 24) 98172 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 30723 chrX 50448688 50448792 + 0 NA intron (NM_001013742, intron 1 of 27) intron (NM_001013742, intron 1 of 27) 21998 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 30356 chr9 136400194 136400346 + 0 NA Intergenic CpG -1833 NM_003086 6621 Hs.113265 NM_003086 ENSG00000165684 SNAPC4 PTFalpha|SNAP190 small nuclear RNA activating complex polypeptide 4 protein-coding 28647 chr8 127810212 127810257 + 0 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 14272 NR_031609 100302185 NR_031609 ENSG00000249859 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 11936 chr17 3013134 3013238 + 0 NA intron (NM_001330058, intron 17 of 24) intron (NM_001330058, intron 17 of 24) -47291 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 15353 chr2 36953065 36953169 + 0 NA intron (NM_003162, intron 1 of 17) intron (NM_003162, intron 1 of 17) 13355 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 25191 chr6 136250354 136250432 + 0 NA promoter-TSS (NM_001099286) promoter-TSS (NM_001099286) -58 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 19972 chr3 118884760 118884864 + 0 NA Intergenic Intergenic -58264 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 4118 chr10 95295258 95295312 + 0 NA Intergenic Intergenic -4137 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 20944 chr3 190369865 190370002 + 0 NA Intergenic Intergenic -17939 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 66 chr1 4650546 4650741 + 0 NA Intergenic Intergenic -4402 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 20841 chr3 185335970 185336138 + 0 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) -26994 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 25398 chr6 157022204 157022209 + 0 NA intron (NM_020732, intron 5 of 19) CpG -242475 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 21679 chr4 107862774 107862901 + 0 NA TTS (NR_125929) TTS (NR_125929) -30427 NM_152621 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 24012 chr6 10316438 10316620 + 0 NA Intergenic Intergenic -95789 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 3130 chr1 245621809 245621859 + 0 NA intron (NM_018012, intron 9 of 14) intron (NM_018012, intron 9 of 14) 466849 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 18248 chr20 53643233 53643360 + 0 NA Intergenic Intergenic 34942 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 25214 chr6 138161890 138161994 + 0 NA promoter-TSS (NM_020340) promoter-TSS (NM_020340) 26 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 27683 chr8 37543949 37544053 + 0 NA Intergenic MIRc|SINE|MIR -22615 NR_121621 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 30185 chr9 128438740 128438827 + 0 NA intron (NR_031672, intron 2 of 2).4 intron (NR_031672, intron 2 of 2).4 -16372 NM_153436 4957 Hs.129055 NM_002540 ENSG00000136811 ODF2 CT134|ODF2/1|ODF2/2|ODF84 outer dense fiber of sperm tails 2 protein-coding 24107 chr6 16636441 16636545 + 0 NA intron (NM_001128164, intron 3 of 7) intron (NM_001128164, intron 3 of 7) -124645 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 16220 chr2 120012882 120013088 + 0 NA promoter-TSS (NM_001184937) promoter-TSS (NM_001184937) -43 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 14278 chr19 18678176 18678288 + 0 NA Intergenic Intergenic -5383 NM_015321 23373 Hs.371096 NM_015321 ENSG00000105662 CRTC1 MECT1|TORC-1|TORC1|WAMTP1 CREB regulated transcription coactivator 1 protein-coding 9734 chr14 103921593 103921620 + 0 NA promoter-TSS (NM_001127393) promoter-TSS (NM_001127393) -40 NM_004894 9556 Hs.109052 NM_004894 ENSG00000156411 C14orf2 MP68|PLPM chromosome 14 open reading frame 2 protein-coding 29038 chr9 33264790 33264822 + 0 NA promoter-TSS (NM_001172415) promoter-TSS (NM_001172415) -45 NM_004323 573 Hs.377484 NM_004323 ENSG00000107262 BAG1 BAG-1|HAP|RAP46 BCL2 associated athanogene 1 protein-coding 28879 chr9 2844033 2844137 + 0 NA promoter-TSS (NM_014878) promoter-TSS (NM_014878) 45 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 9094 chr14 58199936 58200123 + 0 NA promoter-TSS (NM_018477) promoter-TSS (NM_018477) -86 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin-related protein 10 homolog protein-coding 28761 chr8 140457707 140457811 + 0 NA promoter-TSS (NM_001160372) promoter-TSS (NM_001160372) 3 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 15803 chr2 73233286 73233487 + 0 NA promoter-TSS (NM_001009570) promoter-TSS (NM_001009570) -102 NR_144358 84279 Hs.61268 NM_032319 ENSG00000135617 PRADC1 C2orf7|PAP21 protease associated domain containing 1 protein-coding 3469 chr10 26860888 26861020 + 0 NA 5' UTR (NM_001178120, exon 1 of 10) 5' UTR (NM_001178120, exon 1 of 10) 133 NM_001012750 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 30588 chrX 28203790 28203801 + 0 NA Intergenic Intergenic -222346 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 25203 chr6 137219452 137219556 + 0 NA promoter-TSS (NM_000416) promoter-TSS (NM_000416) -74 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 3388 chr10 21432419 21432523 + 0 NA Intergenic MER4D|LTR|ERV1 64170 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 10623 chr15 86022028 86022132 + 0 NA Intergenic Intergenic -57728 NM_152336 123624 Hs.31795 NM_152336 ENSG00000166748 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 28791 chr8 142676189 142676326 + 0 NA intron (NR_033343, intron 1 of 2) intron (NR_033343, intron 1 of 2) -4199 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 14075 chr19 10403560 10403706 + 0 NA promoter-TSS (NR_031592) promoter-TSS (NR_031592) -38 NM_007065 11140 Hs.160958 NM_007065 ENSG00000105401 CDC37 P50CDC37 cell division cycle 37 protein-coding 9840 chr15 33194743 33194880 + 0 NA promoter-TSS (NM_001277313) promoter-TSS (NM_001277313) -78 NM_001277313 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 13475 chr18 44341955 44342059 + 0 NA intron (NR_110792, intron 2 of 4) L1MA3|LINE|L1 189690 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 5316 chr11 59669114 59669273 + 0 NA promoter-TSS (NM_152716) promoter-TSS (NM_152716) -155 NM_152716 219988 Hs.591960 NM_152716 ENSG00000166889 PATL1 Pat1b|hPat1b PAT1 homolog 1, processing body mRNA decay factor protein-coding 18735 chr22 27457133 27457176 + 0 NA Intergenic L2c|LINE|L2 146503 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LOC100507657 - uncharacterized LOC100507657 ncRNA 15439 chr2 43179070 43179206 + 0 NA Intergenic Intergenic 47468 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 9099 chr14 58427650 58427754 + 0 NA promoter-TSS (NR_130750) promoter-TSS (NR_130750) 26 NM_001329945 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 2498 chr1 206030776 206030929 + 0 NA Intergenic Intergenic -6943 NM_001317331 1510 Hs.644082 NM_001910 ENSG00000196188 CTSE CATE cathepsin E protein-coding 19729 chr3 98502296 98502381 + 0 NA Intergenic Intergenic 4657 NM_001004737 402135 Hs.632558 NM_001004737 ENSG00000231861 OR5K2 OR3-9 olfactory receptor family 5 subfamily K member 2 protein-coding 19467 chr3 48440080 48440234 + 0 NA promoter-TSS (NM_001256964) promoter-TSS (NM_001256964) -38 NM_001256966 79714 Hs.187657 NM_024661 ENSG00000164051 CCDC51 - coiled-coil domain containing 51 protein-coding 5739 chr11 82680319 82680461 + 0 NA Intergenic LTR8|LTR|ERV1 53474 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 24768 chr6 70413255 70413343 + 0 NA promoter-TSS (NM_001331001) promoter-TSS (NM_001331001) -105 NM_001331003 57579 Hs.211700 NM_020819 ENSG00000082269 FAM135A KIAA1411 family with sequence similarity 135 member A protein-coding 18974 chr22 42369322 42369460 + 0 NA promoter-TSS (NR_120595) promoter-TSS (NR_120595) -183 NR_120596 102723775 Hs.335413 NR_120595 ENSG00000229891 LINC01315 lnc-C22orf32-1 long intergenic non-protein coding RNA 1315 ncRNA 28254 chr8 97090188 97090292 + 0 NA intron (NM_016134, intron 7 of 7) MIRc|SINE|MIR 187708 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 17336 chr2 236770105 236770209 + 0 NA Intergenic Intergenic 200420 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 219 chr1 15952867 15952971 + 0 NA intron (NM_003443, intron 2 of 15) MLT1H|LTR|ERVL-MaLR 23213 NM_001324138 7709 Hs.433764 NM_003443 ENSG00000116809 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 1016 chr1 63969756 63969827 + 0 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 142414 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 4958 chr11 18383878 18383982 + 0 NA Intergenic Intergenic -3857 NR_036116 100423016 NR_036116 ENSG00000264603 MIR3159 - microRNA 3159 ncRNA 26646 chr7 97005403 97005541 + 0 NA promoter-TSS (NM_005222) promoter-TSS (NM_005222) -506 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 21447 chr4 74320685 74320826 + 0 NA Intergenic Intergenic 12285 NM_001270989 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 30393 chr9 137578831 137578974 + 0 NA promoter-TSS (NM_001346374) promoter-TSS (NM_001346374) 33 NM_001346371 92715 Hs.292570 NM_138778 ENSG00000148399 DPH7 C9orf112|RRT2|WDR85 diphthamide biosynthesis 7 protein-coding 22830 chr5 84437791 84437882 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -52969 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 390 chr1 25247440 25247594 + 0 NA promoter-TSS (NR_135143) promoter-TSS (NR_135143) 2 NR_135785 57035 Hs.259412 NM_020317 ENSG00000117616 RSRP1 C1orf63|NPD014 arginine and serine rich protein 1 protein-coding 5319 chr11 59755272 59755412 + 0 NA 5' UTR (NM_001178040, exon 1 of 10) 5' UTR (NM_001178040, exon 1 of 10) 283 NM_004177 6809 Hs.180711 NM_004177 ENSG00000166900 STX3 STX3A syntaxin 3 protein-coding 13120 chr17 81223028 81223174 + 0 NA promoter-TSS (NM_001319228) promoter-TSS (NM_001319228) -112 NM_001319228 22994 Hs.514578 NM_014984 ENSG00000141577 CEP131 AZ1|AZI1|ZA1 centrosomal protein 131 protein-coding 1515 chr1 111755510 111755584 + 0 NA promoter-TSS (NR_125963) promoter-TSS (NR_125963) -21 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 23540 chr5 151447459 151447475 + 0 NA promoter-TSS (NM_001308150) promoter-TSS (NM_001308150) -129 NM_001308150 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 9757 chr14 105490942 105491096 + 0 NA promoter-TSS (NM_001134875) promoter-TSS (NM_001134875) -230 NM_001134875 283643 Hs.720306 NM_173608 ENSG00000185347 C14orf80 - chromosome 14 open reading frame 80 protein-coding 9218 chr14 65020172 65020217 + 0 NA intron (NM_001202558, intron 5 of 12) intron (NM_001202558, intron 5 of 12) -24494 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 13194 chr17_KI270729v1_random 54627 54781 + 0 NA NA (GAATG)n|Satellite|Satellite NA NA 20905 chr3 189268459 189268613 + 0 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -27942 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 9533 chr14 89954767 89954917 + 0 NA promoter-TSS (NM_001284269) promoter-TSS (NM_001284269) -65 NM_145231 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 24551 chr6 42122786 42122937 + 0 NA intron (NM_001164446, intron 2 of 4) intron (NM_001164446, intron 2 of 4) 20116 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 23738 chr5 172983717 172983755 + 0 NA promoter-TSS (NM_003945) promoter-TSS (NM_003945) -24 NM_003945 8992 Hs.484188 NM_003945 ENSG00000113732 ATP6V0E1 ATP6H|ATP6V0E|M9.2|Vma21|Vma21p ATPase H+ transporting V0 subunit e1 protein-coding 16963 chr2 205748789 205748864 + 0 NA intron (NM_201279, intron 10 of 15) L2a|LINE|L2 66326 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 30170 chr9 128128150 128128254 + 0 NA promoter-TSS (NM_001256335) promoter-TSS (NM_001256335) -14 NM_001256335 80142 Hs.495219 NM_025072 ENSG00000148334 PTGES2 C9orf15|GBF-1|GBF1|PGES2|mPGES-2 prostaglandin E synthase 2 protein-coding 29348 chr9 79858637 79858741 + 0 NA intron (NR_121213, intron 1 of 2) MER101|LTR|ERV1 34159 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 20862 chr3 186109102 186109310 + 0 NA promoter-TSS (NM_004454) promoter-TSS (NM_004454) -94 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 12705 chr17 51848568 51848672 + 0 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 310152 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 945 chr1 58784108 58784270 + 0 NA promoter-TSS (NR_034014) promoter-TSS (NR_034014) -76 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 27007 chr7 130373808 130373868 + 0 NA Intergenic Intergenic -6533 NM_001868 1357 Hs.2879 NM_001868 ENSG00000091704 CPA1 CPA carboxypeptidase A1 protein-coding 21810 chr4 137367775 137367845 + 0 NA Intergenic MIR|SINE|MIR 164688 NM_019035 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 5153 chr11 35139029 35139133 + 0 NA 5' UTR (NM_001202557, exon 1 of 9) 5' UTR (NM_001202557, exon 1 of 9) 211 NM_001202556 960 Hs.502328 NM_000610 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 9629 chr14 96424418 96424522 + 0 NA intron (NM_152327, intron 5 of 17) MIR|SINE|MIR 32359 NM_152327 122481 Hs.667462 NM_152327 ENSG00000140057 AK7 AK 7 adenylate kinase 7 protein-coding 21324 chr4 44678343 44678484 + 0 NA promoter-TSS (NM_001345869) promoter-TSS (NM_001345869) -3 NM_021927 60558 Hs.546419 NM_021927 ENSG00000151806 GUF1 EF-4|EF4|EIEE40 GUF1 homolog, GTPase protein-coding 20438 chr3 153138673 153138797 + 0 NA Intergenic Intergenic -23477 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 13048 chr17 76671196 76671350 + 0 NA promoter-TSS (NR_130916) promoter-TSS (NR_130916) -655 NR_130916 105274304 Hs.572495 NR_130916 ENSG00000261335 LOC105274304 - uncharacterized LOC105274304 ncRNA 4917 chr11 16280429 16280576 + 0 NA intron (NM_001145811, intron 3 of 14) intron (NM_001145811, intron 3 of 14) 122365 NM_001145819 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box 6 protein-coding 15697 chr2 66496181 66496280 + 0 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -55900 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 11142 chr16 23596235 23596415 + 0 NA promoter-TSS (NM_005003) promoter-TSS (NM_005003) -7 NM_005003 4706 Hs.189716 NM_005003 ENSG00000004779 NDUFAB1 ACP|FASN2A|SDAP NADH:ubiquinone oxidoreductase subunit AB1 protein-coding 29209 chr9 72365316 72365461 + 0 NA promoter-TSS (NM_001278243) promoter-TSS (NM_001278243) -141 NM_006007 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 24542 chr6 41921090 41921194 + 0 NA promoter-TSS (NM_001305456) promoter-TSS (NM_001305456) 5 NM_004275 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|TRFP mediator complex subunit 20 protein-coding 737 chr1 42682233 42682387 + 0 NA promoter-TSS (NM_004559) promoter-TSS (NM_004559) 75 NM_004559 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 5284 chr11 57788497 57788627 + 0 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 26800 NM_001085467 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 4338 chr10 110353894 110353998 + 0 NA Intergenic Intergenic -48997 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 22809 chr5 82357495 82357599 + 0 NA Intergenic Intergenic 78085 NM_001017971 92270 Hs.729805 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 3037 chr1 237013132 237013236 + 0 NA Intergenic Intergenic -8766 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H-like 1 protein-coding 21710 chr4 112523908 112524012 + 0 NA Intergenic CpG -7788 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 5099 chr11 32583660 32583834 + 0 NA promoter-TSS (NM_001307929) promoter-TSS (NM_001307929) -20 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 7161 chr12 57462734 57462838 + 0 NA intron (NM_001160045, intron 1 of 9) intron (NM_001160045, intron 1 of 9) 2635 NM_001167609 2735 Hs.632702 NM_005269 ENSG00000111087 GLI1 GLI GLI family zinc finger 1 protein-coding 7465 chr12 96094380 96094484 + 0 NA Intergenic L2a|LINE|L2 -50912 NM_001256644 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 26964 chr7 127392665 127392788 + 0 NA promoter-TSS (NM_176814) promoter-TSS (NM_176814) -2 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 5366 chr11 62548059 62548188 + 0 NA Intergenic Intergenic -1263 NM_001620 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 12586 chr17 45312201 45312256 + 0 NA intron (NM_003954, intron 1 of 15) intron (NM_003954, intron 1 of 15) 4836 NM_003954 9020 Hs.404183 NM_003954 ENSG00000006062 MAP3K14 FTDCR1B|HS|HSNIK|NIK mitogen-activated protein kinase kinase kinase 14 protein-coding 9934 chr15 40769493 40769632 + 0 NA promoter-TSS (NM_001130448) promoter-TSS (NM_001130448) -399 NM_001130448 643338 Hs.631715 NM_001130448 ENSG00000188277 C15orf62 - chromosome 15 open reading frame 62 protein-coding 220 chr1 16056209 16056278 + 0 NA intron (NM_000085, intron 18 of 19) intron (NM_000085, intron 18 of 19) 7481 NM_001165945 1188 Hs.352243 NM_000085 ENSG00000184908 CLCNKB CLCKB|ClC-K2|ClC-Kb chloride voltage-gated channel Kb protein-coding 21740 chr4 119102731 119102835 + 0 NA Intergenic Intergenic -33001 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 15843 chr2 74887692 74887796 + 0 NA intron (NM_000189, intron 15 of 17) intron (NM_000189, intron 15 of 17) -21387 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 24984 chr6 108074813 108074840 + 0 NA promoter-TSS (NM_014028) promoter-TSS (NM_014028) -89 NM_014028 28962 Hs.226780 NM_014028 ENSG00000081087 OSTM1 GIPN|GL|HSPC019|OPTB5 osteopetrosis associated transmembrane protein 1 protein-coding 8592 chr13 109738427 109738531 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 10205 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 14389 chr19 36132523 36132688 + 0 NA Intergenic Intergenic -7321 NM_001003962 826 Hs.515371 NM_001749 ENSG00000126247 CAPNS1 CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain small subunit 1 protein-coding 19831 chr3 108127323 108127393 + 0 NA intron (NR_110028, intron 1 of 2) intron (NR_110028, intron 1 of 2) 1537 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 11076 chr16 18983774 18983898 + 0 NA promoter-TSS (NM_001160364) promoter-TSS (NM_001160364) -98 NM_001324265 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 7460 chr12 95649455 95649587 + 0 NA intron (NR_077225, intron 1 of 4) intron (NR_077225, intron 1 of 4) 266 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 10182 chr15 58521706 58521799 + 0 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -23017 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 8386 chr13 76991987 76992141 + 0 NA exon (NM_006493, exon 1 of 4) exon (NM_006493, exon 1 of 4) 140 NM_006493 1203 Hs.30213 NM_006493 ENSG00000102805 CLN5 NCL ceroid-lipofuscinosis, neuronal 5 protein-coding 19044 chr22 49853557 49853650 + 0 NA promoter-TSS (NM_014838) promoter-TSS (NM_014838) -246 NM_014838 9889 Hs.475208 NM_014838 ENSG00000100426 ZBED4 - zinc finger BED-type containing 4 protein-coding 26904 chr7 120407148 120407252 + 0 NA intron (NM_012281, intron 1 of 5) MER103C|DNA|hAT-Charlie 133532 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 4170 chr10 97651840 97651980 + 0 NA intron (NM_018425, intron 2 of 8) intron (NM_018425, intron 2 of 8) 11224 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 19996 chr3 120113682 120113786 + 0 NA Intergenic Intergenic -19317 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 8541 chr13 104571707 104571746 + 0 NA Intergenic Intergenic -894141 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 7921 chr12 132956283 132956401 + 0 NA promoter-TSS (NM_183238) promoter-TSS (NM_183238) -36 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 23463 chr5 148623915 148624019 + 0 NA intron (NM_001040169, intron 1 of 5) L3b|LINE|CR1 13094 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 16720 chr2 177396786 177396890 + 0 NA intron (NM_003659, intron 1 of 19) intron (NM_003659, intron 1 of 19) 4095 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 18019 chr20 41003827 41003868 + 0 NA intron (NM_001318197, intron 1 of 3) intron (NM_001318197, intron 1 of 3) 23086 NM_001318196 100128988 Hs.636443 NM_001318196 LOC100128988 - uncharacterized LOC100128988 protein-coding 15002 chr2 10812779 10812928 + 0 NA promoter-TSS (NM_005742) promoter-TSS (NM_005742) -14 NM_001282707 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 26743 chr7 102396159 102396268 + 0 NA promoter-TSS (NM_024653) promoter-TSS (NM_024653) -144 NM_024653 79706 Hs.722104 NM_024653 ENSG00000128563 PRKRIP1 C114|KRBOX3 PRKR interacting protein 1 (IL11 inducible) protein-coding 22549 chr5 55577481 55577541 + 0 NA Intergenic Intergenic -42433 NM_176895 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 16291 chr2 128027325 128027429 + 0 NA promoter-TSS (NM_001145928) promoter-TSS (NM_001145928) -82 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 21628 chr4 101019994 101020098 + 0 NA Intergenic Intergenic 220826 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 11101 chr16 20806430 20806558 + 0 NA promoter-TSS (NM_080663) promoter-TSS (NM_080663) -21 NM_001142725 112479 Hs.248437 NM_080663 ENSG00000196678 ERI2 EXOD1|ZGRF5 ERI1 exoribonuclease family member 2 protein-coding 6814 chr12 30754848 30754952 + 0 NA promoter-TSS (NM_001319843) promoter-TSS (NM_001319843) -10 NM_001319845 65981 Hs.234355 NM_023925 ENSG00000110888 CAPRIN2 C1QDC1|EEG-1|EEG1|RNG140 caprin family member 2 protein-coding 26137 chr7 42661463 42661567 + 0 NA TTS (NR_110833) TTS (NR_110833) 44932 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 20194 chr3 134317679 134317783 + 0 NA Intergenic Intergenic 50131 NR_106885 102466744 NR_106885 ENSG00000277723 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 5253 chr11 47565394 47565577 + 0 NA promoter-TSS (NM_001143984) promoter-TSS (NM_001143984) 55 NM_175732 114971 Hs.656205 NM_175732 ENSG00000110536 PTPMT1 DUSP23|MOSP|PLIP|PNAS-129 protein tyrosine phosphatase, mitochondrial 1 protein-coding 6483 chr12 5348613 5348614 + 0 NA Intergenic Intergenic -83501 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 29045 chr9 33473965 33474106 + 0 NA promoter-TSS (NM_022917) promoter-TSS (NM_022917) -92 NM_139235 65083 Hs.493709 NM_022917 ENSG00000165271 NOL6 NRAP|UTP22|bA311H10.1 nucleolar protein 6 protein-coding 22616 chr5 61867105 61867209 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -131459 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 8086 chr13 33152523 33152654 + 0 NA intron (NM_178006, intron 3 of 13) LTR35|LTR|ERV1 33491 NM_001243466 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 3146 chr1 247104371 247104475 + 0 NA promoter-TSS (NM_001142572) promoter-TSS (NM_001142572) -51 NM_024804 79862 Hs.163754 NM_024804 ENSG00000188295 ZNF669 - zinc finger protein 669 protein-coding 18701 chr22 24578904 24579009 + 0 NA Intergenic MER74B|LTR|ERVL -4794 NM_013430 2678 Hs.595809 NM_005265 ENSG00000100031 GGT1 CD224|D22S672|D22S732|GGT|GGT 1|GTG gamma-glutamyltransferase 1 protein-coding 9108 chr14 59117078 59117232 + 0 NA Intergenic L2c|LINE|L2 -71508 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 15535 chr2 53131607 53131664 + 0 NA Intergenic Intergenic -429020 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 1573 chr1 116290414 116290518 + 0 NA Intergenic Intergenic -82707 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 - ATPase Na+/K+ transporting subunit alpha 1 protein-coding 5484 chr11 65570230 65570310 + 0 NA promoter-TSS (NM_001303024) promoter-TSS (NM_001303024) 143 NR_038923 254100 Hs.595927 NR_038923 SSSCA1-AS1 - SSSCA1 antisense RNA 1 (head to head) ncRNA 14945 chr2 8313007 8313111 + 0 NA intron (NR_034135, intron 2 of 8) MLT1A|LTR|ERVL-MaLR 15360 NR_034135 339789 Hs.565619 NM_207358 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 23747 chr5 173616005 173616109 + 0 NA intron (NM_138369, intron 1 of 3) intron (NM_138369, intron 1 of 3) 606 NM_001159651 91272 Hs.425091 NM_138369 ENSG00000145919 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 22509 chr5 52800745 52800896 + 0 NA exon (NM_015946, exon 2 of 3) exon (NM_015946, exon 2 of 3) 12518 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 24002 chr6 9516296 9516400 + 0 NA Intergenic Intergenic 864139 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 3524 chr10 31319451 31319588 + 0 NA promoter-TSS (NR_024284) promoter-TSS (NR_024284) 347 NM_001323653 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 3725 chr10 59508506 59508607 + 0 NA Intergenic Intergenic -145375 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 7521 chr12 100868137 100868241 + 0 NA intron (NM_178826, intron 1 of 26) ERVL-E-int|LTR|ERVL -33457 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 14443 chr19 39480775 39480868 + 0 NA exon (NM_001001563, exon 1 of 11) exon (NM_001001563, exon 1 of 11) 409 NM_001001563 92609 Hs.590956 NM_001001563 ENSG00000105197 TIMM50 TIM50|TIM50L translocase of inner mitochondrial membrane 50 protein-coding 16663 chr2 172427544 172427648 + 0 NA promoter-TSS (NM_000210) promoter-TSS (NM_000210) 41 NM_001079818 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 1772 chr1 153727860 153727988 + 0 NA promoter-TSS (NM_001324475) promoter-TSS (NM_001324475) -143 NM_023015 65123 Hs.438723 NM_023015 ENSG00000143624 INTS3 C1orf193|C1orf60|INT3|SOSS-A|SOSSA integrator complex subunit 3 protein-coding 19964 chr3 118536871 118537008 + 0 NA intron (NR_135547, intron 3 of 3) MLT1J|LTR|ERVL-MaLR -104829 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 24905 chr6 89298049 89298194 + 0 NA intron (NM_002043, intron 2 of 8) intron (NM_002043, intron 2 of 8) 17178 NM_002043 2570 Hs.379330 NM_002043 ENSG00000111886 GABRR2 - gamma-aminobutyric acid type A receptor rho2 subunit protein-coding 23359 chr5 140711176 140711394 + 0 NA promoter-TSS (NR_026703) promoter-TSS (NR_026703) 9 NR_026703 56664 NR_026703 ENSG00000199990 VTRNA1-1 HVG1|VAULTRC1|VR1|hvg-1|vRNA vault RNA 1-1 ncRNA 2324 chr1 198776801 198776905 + 0 NA Intergenic Intergenic 82129 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 2217 chr1 183635727 183635877 + 0 NA promoter-TSS (NM_001297669) promoter-TSS (NM_001297669) 139 NM_001270439 10092 Hs.518609 NM_005717 ENSG00000162704 ARPC5 ARC16|dJ127C7.3|p16-Arc actin related protein 2/3 complex subunit 5 protein-coding 26193 chr7 45921191 45921345 + 0 NA promoter-TSS (NM_000598) promoter-TSS (NM_000598) 4 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 18893 chr22 38318355 38318509 + 0 NA promoter-TSS (NM_001894) promoter-TSS (NM_001894) -348 NM_001894 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 18727 chr22 26645321 26645461 + 0 NA Intergenic Intergenic -12091 NR_033319 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript (non-protein coding) ncRNA 6386 chr11 132072286 132072390 + 0 NA intron (NM_001144058, intron 1 of 7) intron (NM_001144058, intron 1 of 7) 161520 NM_016522 50863 Hs.504352 NM_016522 ENSG00000182667 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 10630 chr15 86653529 86653633 + 0 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -279299 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 6020 chr11 107840784 107840966 + 0 NA intron (NM_017515, intron 1 of 7) intron (NM_017515, intron 1 of 7) 18313 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 17581 chr20 10541418 10541522 + 0 NA intron (NM_001009608, intron 2 of 7) MER3|DNA|hAT-Charlie 106167 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 15863 chr2 77005677 77005781 + 0 NA intron (NR_110284, intron 3 of 3) THE1B|LTR|ERVL-MaLR 19764 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 13286 chr18 12947835 12947994 + 0 NA promoter-TSS (NM_001013437) promoter-TSS (NM_001013437) -70 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 4785 chr11 8832596 8832700 + 0 NA intron (NM_005418, intron 3 of 22) intron (NM_005418, intron 3 of 22) -21313 NM_139157 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 7423 chr12 92161247 92161351 + 0 NA intron (NR_135037, intron 3 of 3) L2a|LINE|L2 15214 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 25772 chr7 18178331 18178466 + 0 NA intron (NM_001321868, intron 2 of 25) intron (NM_001321868, intron 2 of 25) -51089 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 23191 chr5 131263912 131263988 + 0 NA promoter-TSS (NM_001038702) promoter-TSS (NM_001038702) -59 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 14186 chr19 14518729 14518833 + 0 NA promoter-TSS (NM_001300914) promoter-TSS (NM_001300914) -222 NM_006145 3337 Hs.515210 NM_006145 ENSG00000132002 DNAJB1 HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 DnaJ heat shock protein family (Hsp40) member B1 protein-coding 14121 chr19 11559244 11559360 + 0 NA promoter-TSS (NM_032377) promoter-TSS (NM_032377) -66 NM_032377 84337 Hs.631633 NM_032377 ENSG00000130165 ELOF1 ELF1 elongation factor 1 homolog protein-coding 28113 chr8 82996884 82997036 + 0 NA Intergenic L1PBa|LINE|L1 84856 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 24643 chr6 47168256 47168405 + 0 NA Intergenic Intergenic -125967 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 14420 chr19 38619015 38619068 + 0 NA promoter-TSS (NM_001308393) promoter-TSS (NM_001308393) -31 NM_001308393 27335 Hs.314359 NM_013234 ENSG00000178982 EIF3K ARG134|EIF3-p28|EIF3S12|HSPC029|M9|MSTP001|PLAC-24|PLAC24|PRO1474|PTD001 eukaryotic translation initiation factor 3 subunit K protein-coding 15428 chr2 42896993 42897097 + 0 NA Intergenic Intergenic -104434 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 13736 chr18 67360240 67360365 + 0 NA Intergenic Intergenic -156244 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 25525 chr7 816470 816616 + 0 NA promoter-TSS (NM_001171945) promoter-TSS (NM_001171945) -72 NM_001171944 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 13373 chr18 28794685 28794789 + 0 NA Intergenic Intergenic -617291 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 2503 chr1 206513795 206513932 + 0 NA intron (NM_182664, intron 1 of 4) intron (NM_182664, intron 1 of 4) 6333 NM_182663 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 26923 chr7 122144260 122144377 + 0 NA promoter-TSS (NM_005763) promoter-TSS (NM_005763) -28 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 28209 chr8 94242158 94242318 + 0 NA Intergenic Intergenic 20081 NM_181702 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 4100 chr10 93893965 93894069 + 0 NA promoter-TSS (NM_001134658) promoter-TSS (NM_001134658) 47 NM_001134658 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 388 chr1 25232446 25232550 + 0 NA promoter-TSS (NM_015484) promoter-TSS (NM_015484) 24 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 28569 chr8 123416359 123416463 + 0 NA promoter-TSS (NM_001283024) promoter-TSS (NM_001283024) -314 NM_001283027 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 27532 chr8 23246572 23246721 + 0 NA promoter-TSS (NM_001317899) promoter-TSS (NM_001317899) 54 NM_001317899 91782 Hs.5019 NM_152272 ENSG00000147457 CHMP7 - charged multivesicular body protein 7 protein-coding 5350 chr11 61697231 61697335 + 0 NA intron (NM_006133, intron 1 of 19) intron (NM_006133, intron 1 of 19) 16850 NM_006133 747 Hs.241564 NM_006133 ENSG00000134780 DAGLA C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR diacylglycerol lipase alpha protein-coding 22542 chr5 55219084 55219226 + 0 NA TTS (NM_001190787) TTS (NM_001190787) 8160 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 5053 chr11 27770714 27770818 + 0 NA Intergenic Intergenic -48708 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 30666 chrX 47190684 47190837 + 0 NA promoter-TSS (NM_153280) promoter-TSS (NM_153280) -40 NM_153280 7317 Hs.533273 NM_003334 ENSG00000130985 UBA1 A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X ubiquitin like modifier activating enzyme 1 protein-coding 28241 chr8 95269984 95270006 + 0 NA promoter-TSS (NM_177965) promoter-TSS (NM_177965) -761 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 24912 chr6 90218535 90218706 + 0 NA intron (NM_001170794, intron 1 of 6) intron (NM_001170794, intron 1 of 6) 78288 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25 BTB domain and CNC homolog 2 protein-coding 15138 chr2 20172365 20172513 + 0 NA Intergenic Intergenic 52727 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 9180 chr14 63492566 63492670 + 0 NA intron (NM_001282180, intron 2 of 13) intron (NM_001282180, intron 2 of 13) 15620 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E - protein phosphatase 2 regulatory subunit B'epsilon protein-coding 22203 chr5 9712659 9712804 + 0 NA intron (NR_027112, intron 8 of 12) intron (NR_027112, intron 8 of 12) -82380 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 4190 chr10 98467548 98467744 + 0 NA intron (NM_001166246, intron 11 of 12) intron (NM_001166246, intron 11 of 12) -20683 NM_001322481 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 15064 chr2 14634421 14634554 + 0 NA promoter-TSS (NM_001291410) promoter-TSS (NM_001291410) -604 NM_001291410 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 17921 chr20 35305820 35305983 + 0 NA intron (NM_199487, intron 8 of 8) intron (NM_199487, intron 8 of 8) -13479 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 485 chr1 28648290 28648394 + 0 NA promoter-TSS (NR_004407) promoter-TSS (NR_004407) -258 NR_004407 26824 Hs.640266 NR_004407 ENSG00000270103 RNU11 RNU11-1|U11 RNA, U11 small nuclear snRNA 31110 chrX 138925543 138925647 + 0 NA intron (NM_001139500, intron 2 of 6) intron (NM_001139500, intron 2 of 6) -58040 NM_001139502 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2 fibroblast growth factor 13 protein-coding 26052 chr7 36152941 36153065 + 0 NA promoter-TSS (NM_030636) promoter-TSS (NM_030636) -224 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 9925 chr15 40338981 40339101 + 0 NA intron (NM_207380, intron 3 of 10) intron (NM_207380, intron 3 of 10) 1926 NM_207380 388115 Hs.32433 NM_207380 ENSG00000188549 C15orf52 - chromosome 15 open reading frame 52 protein-coding 27187 chr7 148339341 148339475 + 0 NA intron (NM_014141, intron 21 of 23) CpG -251157 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 3316 chr10 14554275 14554379 + 0 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) 1853 NM_001320738 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 29098 chr9 37954024 37954155 + 0 NA intron (NM_003028, intron 4 of 5) intron (NM_003028, intron 4 of 5) -49736 NR_024873 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 29400 chr9 84712078 84712227 + 0 NA intron (NM_001007097, intron 6 of 12) intron (NM_001007097, intron 6 of 12) 41775 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 28284 chr8 99705885 99705989 + 0 NA intron (NM_152564, intron 36 of 61) intron (NM_152564, intron 36 of 61) -169076 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 1270 chr1 89363298 89363402 + 0 NA promoter-TSS (NM_001320257) promoter-TSS (NM_001320257) -527 NM_198460 163351 Hs.254338 NM_198460 ENSG00000183347 GBP6 - guanylate binding protein family member 6 protein-coding 10708 chr15 90530127 90530222 + 0 NA exon (NM_001042574, exon 1 of 15) exon (NM_001042574, exon 1 of 15) 288 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 29148 chr9 69885797 69885849 + 0 NA intron (NR_131756, intron 4 of 5) intron (NR_131756, intron 4 of 5) 65018 NM_001308084 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 11599 chr16 71845803 71845932 + 0 NA promoter-TSS (NM_001137675) promoter-TSS (NM_001137675) -124 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1 like protein-coding 1645 chr1 146038260 146038341 + 0 NA Intergenic AluJb|SINE|Alu 13944 NR_104085 101954276 NR_104085 ENSG00000201558 RNVU1-6 RNU1-99|vU1.6 RNA, variant U1 small nuclear 6 snRNA 3508 chr10 30152150 30152168 + 0 NA Intergenic L1PB1|LINE|L1 -59693 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 324 chr1 21627173 21627229 + 0 NA intron (NM_001145658, intron 2 of 24) intron (NM_001145658, intron 2 of 24) 24654 NM_001145658 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 5987 chr11 103779269 103779373 + 0 NA Intergenic Intergenic -70585 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 9667 chr14 100192974 100193104 + 0 NA Intergenic CpG -33364 NM_206918 123099 Hs.159643 NM_206918 ENSG00000168350 DEGS2 C14orf66|DES2|FADS8 delta 4-desaturase, sphingolipid 2 protein-coding 8027 chr13 28138096 28138200 + 0 NA promoter-TSS (NM_175854) promoter-TSS (NM_175854) -358 NM_175854 255967 Hs.645015 NM_175854 ENSG00000152520 PAN3 - PAN3 poly(A) specific ribonuclease subunit protein-coding 19282 chr3 27369371 27369517 + 0 NA promoter-TSS (NM_152534) promoter-TSS (NM_152534) 16 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 21519 chr4 83035005 83035115 + 0 NA promoter-TSS (NM_001258006) promoter-TSS (NM_001258006) -26 NM_016129 51138 Hs.190384 NM_016129 ENSG00000138663 COPS4 CSN4|SGN4 COP9 signalosome subunit 4 protein-coding 12103 chr17 10618243 10618315 + 0 NA intron (NR_125367, intron 10 of 10) intron (NR_125367, intron 10 of 10) 39030 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 DA2A|DA2B|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 19780 chr3 101936688 101936792 + 0 NA Intergenic Intergenic -4119 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 25722 chr7 15016133 15016284 + 0 NA Intergenic Intergenic -174758 NM_004080 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 2941 chr1 231337793 231337947 + 0 NA promoter-TSS (NM_175876) promoter-TSS (NM_175876) 2 NM_175876 149371 Hs.356198 NM_175876 ENSG00000116903 EXOC8 EXO84|Exo84p|SEC84 exocyst complex component 8 protein-coding 28341 chr8 101603709 101603811 + 0 NA intron (NM_001330593, intron 8 of 15) intron (NM_001330593, intron 8 of 15) 111320 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 21403 chr4 57163749 57163850 + 0 NA intron (NR_034081, intron 1 of 4) CpG -53414 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 10546 chr15 80954519 80954623 + 0 NA intron (NR_126328, intron 1 of 2) intron (NR_126328, intron 1 of 2) 35307 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESDC2 BOCA|MESD mesoderm development candidate 2 protein-coding 19795 chr3 104629169 104629273 + 0 NA Intergenic Intergenic -737492 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 22290 chr5 17229024 17229106 + 0 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 11504 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 15405 chr2 39845585 39845689 + 0 NA Intergenic Intergenic -66361 NM_001321470 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 18000 chr20 40160263 40160367 + 0 NA Intergenic Intergenic 155854 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 12611 chr17 47890057 47890163 + 0 NA Intergenic Intergenic 5706 NR_135480 102724532 Hs.729067 NR_135480 ENSG00000264920 LOC102724532 - uncharacterized LOC102724532 ncRNA 30167 chr9 128067875 128067979 + 0 NA promoter-TSS (NM_197956) promoter-TSS (NM_197956) -273 NM_001006641 114789 Hs.5476 NM_052901 ENSG00000148339 SLC25A25 MCSC|PCSCL|SCAMC-2 solute carrier family 25 member 25 protein-coding 27637 chr8 29669443 29669533 + 0 NA Intergenic Intergenic 78621 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 13166 chr17 82298216 82298400 + 0 NA Intergenic Intergenic -5494 NR_135639 101929511 Hs.147682 NR_135639 ENSG00000265692 LINC01970 - long intergenic non-protein coding RNA 1970 ncRNA 6537 chr12 6871724 6871750 + 0 NA TTS (NM_001159287) TTS (NM_001159287) 1548 NM_001146316 84727 Hs.479856 NM_032641 ENSG00000111671 SPSB2 GRCC9|SSB2 splA/ryanodine receptor domain and SOCS box containing 2 protein-coding 30565 chrX 23276574 23276678 + 0 NA intron (NR_073010, intron 1 of 11) MER5A|DNA|hAT-Charlie 16520 NR_073010 100873065 Hs.628459 NR_046436 PTCHD1-AS DDX53-AS1|PTCHD1AS1|PTCHD1AS2 PTCHD1 antisense RNA (head to head) ncRNA 13627 chr18 57437920 57438071 + 0 NA intron (NM_004852, intron 1 of 1) CpG 2310 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 29104 chr9 38171391 38171495 + 0 NA Intergenic LTR10A|LTR|ERV1 -102230 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 16447 chr2 149169790 149169852 + 0 NA intron (NM_001317002, intron 4 of 7) intron (NM_001317002, intron 4 of 7) 51647 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 17081 chr2 216109321 216109425 + 0 NA promoter-TSS (NM_021141) promoter-TSS (NM_021141) 76 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 16564 chr2 162318597 162318719 + 0 NA promoter-TSS (NM_022168) promoter-TSS (NM_022168) 50 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 25810 chr7 20723072 20723176 + 0 NA exon (NM_001163941, exon 21 of 28) exon (NM_001163941, exon 21 of 28) 63765 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 21670 chr4 106245340 106245482 + 0 NA intron (NM_001163436, intron 10 of 25) L1MCa|LINE|L1 -70199 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 16461 chr2 150529068 150529183 + 0 NA Intergenic Intergenic -41430 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 11697 chr16 79770628 79770751 + 0 NA promoter-TSS (NR_104663) promoter-TSS (NR_104663) -157 NR_104663 102467146 Hs.657587 NR_104663 ENSG00000261390 MAFTRR linc-MAF-4|lincMAF4 MAF transcriptional regulator RNA ncRNA 23481 chr5 149210314 149210418 + 0 NA intron (NM_001345859, intron 6 of 20) MIR|SINE|MIR -61472 NM_001146337 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 13298 chr18 21740595 21740759 + 0 NA promoter-TSS (NM_020774) promoter-TSS (NM_020774) -652 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 11102 chr16 20866328 20866432 + 0 NA intron (NM_173475, intron 1 of 2) intron (NM_173475, intron 1 of 2) -33488 NM_020424 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 18651 chr22 20530720 20530824 + 0 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 22724 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 1712 chr1 151511370 151511402 + 0 NA promoter-TSS (NM_020770) promoter-TSS (NM_020770) 0 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 8243 chr13 48095046 48095168 + 0 NA promoter-TSS (NM_001270629) promoter-TSS (NM_001270629) 34 NM_014166 29079 Hs.181112 NM_014166 ENSG00000136146 MED4 ARC36|DRIP36|HSPC126|TRAP36|VDRIP mediator complex subunit 4 protein-coding 2344 chr1 200372230 200372334 + 0 NA intron (NR_040064, intron 2 of 4) intron (NR_040064, intron 2 of 4) 1510 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 5624 chr11 72103300 72103500 + 0 NA promoter-TSS (NM_017907) promoter-TSS (NM_017907) -13 NM_017907 55004 Hs.731528 NM_017907 ENSG00000149357 LAMTOR1 C11orf59|PDRO|Ragulator1|p18|p27RF-Rho late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding 21224 chr4 20809972 20810076 + 0 NA intron (NM_001035003, intron 2 of 7) intron (NM_001035003, intron 2 of 7) 40644 NM_147181 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 2552 chr1 209266794 209266975 + 0 NA Intergenic L3|LINE|CR1 -58572 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 5007 chr11 22625813 22625937 + 0 NA promoter-TSS (NM_022725) promoter-TSS (NM_022725) -34 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF Fanconi anemia complementation group F protein-coding 26667 chr7 98878957 98878977 + 0 NA intron (NM_001244580, intron 1 of 71) CpG 477 NM_003496 8295 Hs.203952 NM_003496 ENSG00000196367 TRRAP PAF350/400|PAF400|STAF40|TR-AP|Tra1 transformation/transcription domain associated protein protein-coding 25958 chr7 30026719 30026855 + 0 NA promoter-TSS (NM_017946) promoter-TSS (NM_017946) 14 NR_046479 55033 Hs.390838 NM_017946 ENSG00000106080 FKBP14 EDSKMH|FKBP22|IPBP12 FK506 binding protein 14 protein-coding 24697 chr6 52882440 52882586 + 0 NA Intergenic Intergenic 27185 NM_000847 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 12724 chr17 55459065 55459169 + 0 NA Intergenic LTR1A2|LTR|ERV1 -37137 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 29289 chr9 76365178 76365339 + 0 NA Intergenic Intergenic 29270 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 11829 chr16 88238851 88239005 + 0 NA Intergenic Intergenic 44647 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 23143 chr5 126595306 126595324 + 0 NA promoter-TSS (NM_001182) promoter-TSS (NM_001182) 75 NM_001182 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 30280 chr9 131635446 131635585 + 0 NA intron (NM_005312, intron 5 of 23) intron (NM_005312, intron 5 of 23) 74327 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 4452 chr10 118501722 118501874 + 0 NA Intergenic Intergenic 93850 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 29210 chr9 72384131 72384235 + 0 NA Intergenic Intergenic -18936 NM_006007 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 22501 chr5 51810792 51810896 + 0 NA Intergenic Intergenic -427512 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 12984 chr17 74960794 74960943 + 0 NA intron (NM_030630, intron 6 of 18) intron (NM_030630, intron 6 of 18) -9821 NR_110878 102723641 NR_110878 ENSG00000263586 HID1-AS1 - HID1 antisense RNA 1 ncRNA 14934 chr2 4898804 4898908 + 0 NA Intergenic Intergenic -242634 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 20453 chr3 154253177 154253281 + 0 NA intron (NM_001251963, intron 13 of 14) intron (NM_001251963, intron 13 of 14) 71268 NM_020865 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 5456 chr11 65084085 65084184 + 0 NA promoter-TSS (NM_080668) promoter-TSS (NM_080668) 9 NM_080668 113130 Hs.434886 NM_080668 ENSG00000146670 CDCA5 SORORIN cell division cycle associated 5 protein-coding 10946 chr16 4369056 4369160 + 0 NA intron (NR_145128, intron 9 of 27) intron (NR_145128, intron 9 of 27) -2740 NM_138440 114990 Hs.372579 NM_138440 ENSG00000168140 VASN SLITL2 vasorin protein-coding 23210 chr5 132410987 132411091 + 0 NA non-coding (NR_045116, exon 1 of 4) non-coding (NR_045116, exon 1 of 4) 266 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 15298 chr2 30665047 30665151 + 0 NA Intergenic Intergenic 142346 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 3749 chr10 61761072 61761225 + 0 NA intron (NM_173554, intron 6 of 6) intron (NM_173554, intron 6 of 6) 98187 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 C10orf107 bA63A2.1 chromosome 10 open reading frame 107 protein-coding 6029 chr11 108467471 108467602 + 0 NA promoter-TSS (NM_152587) promoter-TSS (NM_152587) -5 NM_152587 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 21527 chr4 83455840 83455986 + 0 NA promoter-TSS (NM_016067) promoter-TSS (NM_016067) -19 NM_001297767 51023 Hs.334772 NM_016067 ENSG00000163319 MRPS18C CGI-134|MRP-S18-1|MRP-S18-c|MRPS18-1|S18mt-c|mrps18-c mitochondrial ribosomal protein S18C protein-coding 3115 chr1 244452178 244452305 + 0 NA promoter-TSS (NM_001126) promoter-TSS (NM_001126) -107 NM_001126 159 Hs.498313 NM_001126 ENSG00000035687 ADSS ADEH|ADSS 2 adenylosuccinate synthase protein-coding 26820 chr7 111357813 111357973 + 0 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 204398 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 21655 chr4 103996731 103996892 + 0 NA Intergenic Intergenic -276995 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3R|NKR|TAC3RL tachykinin receptor 3 protein-coding 965 chr1 59673978 59674139 + 0 NA exon (NM_001113411, exon 15 of 17) exon (NM_001113411, exon 15 of 17) 59238 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 25354 chr6 152272213 152272317 + 0 NA intron (NM_182961, intron 98 of 145) intron (NM_182961, intron 98 of 145) -86887 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 18849 chr22 36417387 36417491 + 0 NA Intergenic MIRc|SINE|MIR -29372 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 14181 chr19 14136733 14136890 + 0 NA promoter-TSS (NM_018154) promoter-TSS (NM_018154) -183 NM_018154 55723 Hs.26516 NM_018154 ENSG00000105011 ASF1B CIA-II anti-silencing function 1B histone chaperone protein-coding 18060 chr20 44210596 44210639 + 0 NA promoter-TSS (NR_038338) promoter-TSS (NR_038338) 289 NM_016470 51526 Hs.75798 NM_016470 ENSG00000132823 OSER1 C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1 oxidative stress responsive serine rich 1 protein-coding 1075 chr1 67686719 67686825 + 0 NA intron (NM_001199741, intron 2 of 2) intron (NM_001199741, intron 2 of 2) 1595 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 27308 chr8 544477 544560 + 0 NA intron (NM_175075, intron 2 of 3) CpG 327 NM_001256113 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 24823 chr6 79537528 79537569 + 0 NA promoter-TSS (NM_001122769) promoter-TSS (NM_001122769) -118 NM_001122769 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 LCA5, lebercilin protein-coding 13262 chr18 10417319 10417480 + 0 NA Intergenic Intergenic -3029 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 9922 chr15 40239258 40239439 + 0 NA promoter-TSS (NM_020168) promoter-TSS (NM_020168) 257 NM_001276718 56924 Hs.732375 NM_020168 ENSG00000137843 PAK6 PAK5 p21 (RAC1) activated kinase 6 protein-coding 11059 chr16 15672813 15672979 + 0 NA intron (NM_017668, intron 3 of 8) intron (NM_017668, intron 3 of 8) 22670 NM_017668 54820 Hs.655378 NM_017668 ENSG00000072864 NDE1 HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1 nudE neurodevelopment protein 1 protein-coding 3125 chr1 244970822 244970901 + 0 NA promoter-TSS (NR_111907) promoter-TSS (NR_111907) 8 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 29971 chr9 116008551 116008635 + 0 NA Intergenic Intergenic -83495 NR_024032 58483 Hs.23367 NM_021208 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 13463 chr18 40810521 40810625 + 0 NA Intergenic Intergenic 710024 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 27151 chr7 142813349 142813505 + 0 NA Intergenic Intergenic -41587 NM_001280794 2051 Hs.380089 NM_004445 ENSG00000106123 EPHB6 HEP EPH receptor B6 protein-coding 14953 chr2 9003710 9003759 + 0 NA promoter-TSS (NM_001321265) promoter-TSS (NM_001321265) 16 NM_001321266 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 29267 chr9 75181946 75182071 + 0 NA Intergenic MLT1E2|LTR|ERVL-MaLR 93526 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 6258 chr11 123741635 123741805 + 0 NA promoter-TSS (NM_001301780) promoter-TSS (NM_001301780) -37 NM_001301779 7753 Hs.112556 NM_003455 ENSG00000166261 ZNF202 ZKSCAN10|ZSCAN42 zinc finger protein 202 protein-coding 1779 chr1 153990640 153990668 + 0 NA promoter-TSS (NM_001030) promoter-TSS (NM_001030) -109 NM_001030 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 17518 chr20 5113048 5113202 + 0 NA promoter-TSS (NM_001330985) promoter-TSS (NM_001330985) -38 NM_001009924 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 1807 chr1 155193597 155193618 + 0 NA promoter-TSS (NM_001204286) promoter-TSS (NM_001204286) -692 NM_001204292 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 20236 chr3 138115071 138115170 + 0 NA intron (NM_173543, intron 1 of 15) CpG 489 NM_173543 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2 DAZ interacting zinc finger protein 1 like protein-coding 9101 chr14 58663743 58663847 + 0 NA Intergenic Intergenic 24958 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 12369 chr17 35373117 35373221 + 0 NA intron (NM_001104590, intron 1 of 6) intron (NM_001104590, intron 1 of 6) 532 NM_001104589 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 10359 chr15 69466147 69466296 + 0 NA Intergenic Intergenic 13401 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 5472 chr11 65354675 65354779 + 0 NA promoter-TSS (NM_145719) promoter-TSS (NM_145719) -84 NM_145719 220359 Hs.632121 NM_145719 ENSG00000173825 TIGD3 - tigger transposable element derived 3 protein-coding 19595 chr3 58306207 58306297 + 0 NA promoter-TSS (NM_001098783) promoter-TSS (NM_001098783) 7 NR_049757 11102 Hs.446320 NM_007042 ENSG00000163684 RPP14 HsHTD2|P14 ribonuclease P/MRP subunit p14 protein-coding 28134 chr8 85974531 85974635 + 0 NA Intergenic Intergenic 95114 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 15994 chr2 98087011 98087115 + 0 NA promoter-TSS (NM_144992) promoter-TSS (NM_144992) -69 NM_144992 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 7397 chr12 89709467 89709513 + 0 NA non-coding (NR_028138, exon 1 of 1) non-coding (NR_028138, exon 1 of 1) 535 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 ATP2B1-AS1 LINC00936 ATP2B1 antisense RNA 1 ncRNA 15922 chr2 86195022 86195168 + 0 NA intron (NM_006839, intron 1 of 14) CpG 675 NM_001100169 10989 Hs.148559 NM_006839 ENSG00000132305 IMMT HMP|MINOS2|Mic60|P87|P87/89|P89|PIG4|PIG52 inner membrane mitochondrial protein protein-coding 30092 chr9 124735314 124735338 + 0 NA intron (NM_033334, intron 1 of 9) intron (NM_033334, intron 1 of 9) 35984 NM_001489 2649 Hs.20131 NM_001489 ENSG00000148200 NR6A1 CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR nuclear receptor subfamily 6 group A member 1 protein-coding 21943 chr4 158094886 158094928 + 0 NA Intergenic MER41B|LTR|ERV1 77659 NM_016613 51313 Hs.567498 NM_016613 ENSG00000164125 FAM198B AD021|AD036|C4orf18|ENED family with sequence similarity 198 member B protein-coding 29547 chr9 92293769 92293877 + 0 NA promoter-TSS (NM_002161) promoter-TSS (NM_002161) -67 NR_073446 3376 Hs.445403 NM_002161 ENSG00000196305 IARS GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785 isoleucyl-tRNA synthetase protein-coding 20868 chr3 186590038 186590188 + 0 NA Intergenic L3|LINE|CR1 19437 NM_016306 51726 Hs.317192 NM_016306 ENSG00000090520 DNAJB11 ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PRO1080|UNQ537 DnaJ heat shock protein family (Hsp40) member B11 protein-coding 8279 chr13 50644716 50644877 + 0 NA Intergenic L2a|LINE|L2 -117347 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000229323 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 21688 chr4 109433686 109433837 + 0 NA promoter-TSS (NR_039978) promoter-TSS (NR_039978) 46 NM_001300813 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 11845 chr16 89443482 89443668 + 0 NA intron (NR_110932, intron 1 of 2) intron (NR_110932, intron 1 of 2) 12657 NR_110932 101927817 Hs.667942 NR_110931 LOC101927817 - uncharacterized LOC101927817 ncRNA 21494 chr4 80266427 80266515 + 0 NA promoter-TSS (NM_033143) promoter-TSS (NM_033143) -117 NM_033143 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 9797 chr15 28977487 28977630 + 0 NA intron (NM_005503, intron 1 of 13) intron (NM_005503, intron 1 of 13) 55921 NM_001130414 321 Hs.618112 NM_005503 ENSG00000034053 APBA2 D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L amyloid beta precursor protein binding family A member 2 protein-coding 816 chr1 46218559 46218688 + 0 NA intron (NM_001013615, intron 1 of 1) L2|LINE|L2 1682 NM_001243766 55624 Hs.525134 NM_017739 ENSG00000085998 POMGNT1 GNTI.2|GnT I.2|LGMD2O|MEB|MGAT1.2|RP76|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 26254 chr7 49671131 49671235 + 0 NA Intergenic Intergenic -102478 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 6362 chr11 130434575 130434703 + 0 NA Intergenic Intergenic -5646 NM_007037 11095 Hs.271605 NM_007037 ENSG00000134917 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif 8 protein-coding 29945 chr9 115008687 115008791 + 0 NA Intergenic Intergenic -78144 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 16959 chr2 205682331 205682488 + 0 NA promoter-TSS (NM_201264) promoter-TSS (NM_201264) -91 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 29497 chr9 89519486 89519521 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR -39807 NM_001142287 10507 Hs.494406 NM_006378 ENSG00000187764 SEMA4D C9orf164|CD100|M-sema-G|SEMAJ|coll-4 semaphorin 4D protein-coding 1700 chr1 151059599 151059756 + 0 NA promoter-TSS (NM_001038707) promoter-TSS (NM_001038707) 2 NM_006818 10962 Hs.75823 NM_006818 ENSG00000213190 MLLT11 AF1Q myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11 protein-coding 22991 chr5 108382325 108382418 + 0 NA promoter-TSS (NM_001163315) promoter-TSS (NM_001163315) -273 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 22848 chr5 88438139 88438264 + 0 NA intron (NR_105021, intron 1 of 5) intron (NR_105021, intron 1 of 5) 889 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 12035 chr17 7351947 7352083 + 0 NA TTS (NM_014716) TTS (NM_014716) 126 NM_001002914 147040 Hs.592112 NM_001002914 ENSG00000213859 KCTD11 C17orf36|KCASH1|REN|REN/KCTD11 potassium channel tetramerization domain containing 11 protein-coding 25232 chr6 140043532 140043620 + 0 NA intron (NR_121623, intron 1 of 1) AmnSINE1|SINE|5S-Deu-L2 -52315 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 10102 chr15 51971474 51971599 + 0 NA intron (NM_138792, intron 1 of 11) CpG 265 NM_001286430 123169 Hs.567662 NM_138792 ENSG00000166477 LEO1 RDL LEO1 homolog, Paf1/RNA polymerase II complex component protein-coding 8450 chr13 95154662 95154766 + 0 NA intron (NM_001105515, intron 19 of 20) intron (NM_001105515, intron 19 of 20) 146732 NM_005845 10257 Hs.508423 NM_005845 ENSG00000125257 ABCC4 MOAT-B|MOATB|MRP4 ATP binding cassette subfamily C member 4 protein-coding 4240 chr10 101818590 101818694 + 0 NA promoter-TSS (NM_012215) promoter-TSS (NM_012215) -177 NM_001142434 10724 Hs.500842 NM_012215 ENSG00000198408 MGEA5 MEA5|NCOAT|OGA meningioma expressed antigen 5 (hyaluronidase) protein-coding 22417 chr5 39424895 39424990 + 0 NA 5' UTR (NM_001244871, exon 1 of 14) 5' UTR (NM_001244871, exon 1 of 14) 291 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB2, clathrin adaptor protein protein-coding 13271 chr18 11908378 11908422 + 0 NA non-coding (NR_040241, exon 1 of 12) non-coding (NR_040241, exon 1 of 12) 397 NM_001242904 65258 Hs.712666 NM_023075 ENSG00000154889 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 9315 chr14 70809691 70809795 + 0 NA promoter-TSS (NM_001284230) promoter-TSS (NM_001284230) -572 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 3261 chr10 6912521 6912600 + 0 NA Intergenic Intergenic 132962 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 8116 chr13 36533941 36534045 + 0 NA Intergenic MER89|LTR|ERV1 101721 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 2131 chr1 178341447 178341464 + 0 NA promoter-TSS (NM_004841) promoter-TSS (NM_004841) -16 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 30942 chrX 107725994 107726192 + 0 NA intron (NM_198057, intron 1 of 2) intron (NM_198057, intron 1 of 2) -9032 NM_004089 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 19573 chr3 56801856 56802001 + 0 NA promoter-TSS (NM_019555) promoter-TSS (NM_019555) 39 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 10423 chr15 72783748 72783867 + 0 NA promoter-TSS (NM_031284) promoter-TSS (NM_031284) -22 NM_031284 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 1339 chr1 94580112 94580140 + 0 NA Intergenic L1PA11|LINE|L1 -38269 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 19180 chr3 13451864 13451949 + 0 NA Intergenic MER66A|LTR|ERV1 28147 NR_046690 100874101 Hs.535701 NR_046690 ENSG00000244502 HDAC11-AS1 - HDAC11 antisense RNA 1 ncRNA 13481 chr18 44733527 44733631 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 52681 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 29069 chr9 35111626 35111778 + 0 NA promoter-TSS (NM_001317991) promoter-TSS (NM_001317991) -328 NM_001317991 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 13127 chr17 81346270 81346374 + 0 NA Intergenic CpG -15648 NM_178520 284186 Hs.364191 NM_178520 ENSG00000185332 TMEM105 - transmembrane protein 105 protein-coding 30918 chrX 105635930 105636034 + 0 NA intron (NM_017416, intron 6 of 10) intron (NM_017416, intron 6 of 10) -186561 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 2120 chr1 177585668 177585821 + 0 NA Intergenic Intergenic -114780 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 28589 chr8 125091663 125091821 + 0 NA promoter-TSS (NM_001330609) promoter-TSS (NM_001330609) 77 NM_001330609 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 19399 chr3 41199427 41199430 + 0 NA promoter-TSS (NM_001330729) promoter-TSS (NM_001330729) 4 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 21193 chr4 14726890 14726994 + 0 NA intron (NR_126435, intron 2 of 6) intron (NR_126435, intron 2 of 6) 161227 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 26091 chr7 39566296 39566422 + 0 NA promoter-TSS (NM_020192) promoter-TSS (NM_020192) -17 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1D1 C7orf36|GK003 Yae1 domain containing 1 protein-coding 23966 chr6 7389667 7389795 + 0 NA promoter-TSS (NM_001170692) promoter-TSS (NM_001170692) -22 NM_001170693 285782 Hs.721486 NM_175745 ENSG00000164304 CAGE1 CT3|CT95|CTAG3|bA69L16.7 cancer antigen 1 protein-coding 8784 chr14 30270766 30270917 + 0 NA Intergenic Intergenic -288282 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 8511 chr13 100674916 100675059 + 0 NA promoter-TSS (NM_001079669) promoter-TSS (NM_001079669) -52 NM_001286453 84899 Hs.190983 NM_032813 ENSG00000125247 TMTC4 - transmembrane and tetratricopeptide repeat containing 4 protein-coding 11264 chr16 31265383 31265595 + 0 NA exon (NM_000632, exon 3 of 30) exon (NM_000632, exon 3 of 30) 5522 NM_001145808 3684 Hs.172631 NM_000632 ENSG00000169896 ITGAM CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6 integrin subunit alpha M protein-coding 30309 chr9 133135252 133135277 + 0 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) -4107 NM_001271774 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 4636 chr10 132448002 132448106 + 0 NA exon (NM_173541, exon 3 of 3) exon (NM_173541, exon 3 of 3) 2844 NM_173541 170393 Hs.375059 NM_173541 C10orf91 bA432J24.4 chromosome 10 open reading frame 91 protein-coding 6664 chr12 14365459 14365607 + 0 NA promoter-TSS (NM_001286515) promoter-TSS (NM_001286515) -99 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 21481 chr4 78056761 78056865 + 0 NA promoter-TSS (NM_025074) promoter-TSS (NM_025074) -757 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 - Fraser extracellular matrix complex subunit 1 protein-coding 10057 chr15 49046525 49046649 + 0 NA promoter-TSS (NM_001193489) promoter-TSS (NM_001193489) -24 NM_001193489 9728 Hs.9997 NM_014701 ENSG00000138593 SECISBP2L SBP2L|SLAN SECIS binding protein 2 like protein-coding 21488 chr4 78776322 78776339 + 0 NA promoter-TSS (NM_017593) promoter-TSS (NM_017593) -48 NM_017593 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 13041 chr17 76557687 76557709 + 0 NA promoter-TSS (NR_038108) promoter-TSS (NR_038108) -66 NR_038111 100507246 Hs.288215 NR_038108 ENSG00000163597 SNHG16 Nbla10727|Nbla12061|ncRAN small nucleolar RNA host gene 16 ncRNA 24244 chr6 26596754 26596904 + 0 NA promoter-TSS (NM_013375) promoter-TSS (NM_013375) -114 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 hABT1 activator of basal transcription 1 protein-coding 24532 chr6 41546237 41546324 + 0 NA promoter-TSS (NR_126417) promoter-TSS (NR_126417) -37 NR_126417 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 3997 chr10 80996688 80996864 + 0 NA Intergenic L1PB1|LINE|L1 455957 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 1507 chr1 111214739 111214764 + 0 NA Intergenic MER61E|LTR|ERV1 -10213 NM_001271833 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 1604 chr1 119358855 119358880 + 0 NA Intergenic Intergenic -9909 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 21905 chr4 151730210 151730325 + 0 NA intron (NM_004564, intron 2 of 12) L1PBa1|LINE|L1 30756 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 15245 chr2 27735605 27735640 + 0 NA Intergenic CpG -19890 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 13597 chr18 53796146 53796250 + 0 NA Intergenic Intergenic -215139 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 18618 chr22 18023653 18023757 + 0 NA intron (NM_015241, intron 1 of 31) CpG 854 NM_015241 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 4592 chr10 126749206 126749310 + 0 NA Intergenic Intergenic -156151 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 30057 chr9 122350739 122350843 + 0 NA Intergenic Intergenic -19739 NM_001271368 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 19809 chr3 105869399 105869486 + 0 NA promoter-TSS (NM_001321788) promoter-TSS (NM_001321788) -20 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 25170 chr6 133745915 133746019 + 0 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -75180 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 22175 chr5 5340529 5340633 + 0 NA Intergenic Intergenic -82092 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 16842 chr2 191245283 191245395 + 0 NA promoter-TSS (NM_012223) promoter-TSS (NM_012223) 63 NM_001161819 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 15118 chr2 19073660 19073811 + 0 NA Intergenic Intergenic -46764 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 4922 chr11 16669890 16670047 + 0 NA Intergenic L1PREC2|LINE|L1 -68633 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 275 chr1 19010026 19010086 + 0 NA Intergenic Intergenic -53724 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 14579 chr19 45770603 45770707 + 0 NA intron (NM_001288766, intron 12 of 12) CpG-14726 -1416 NM_175875 147912 Hs.43314 NM_175875 ENSG00000177045 SIX5 BOR2|DMAHP SIX homeobox 5 protein-coding 13674 chr18 60685261 60685365 + 0 NA Intergenic MER74A|LTR|ERVL -312545 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R - melanocortin 4 receptor protein-coding 9630 chr14 96502279 96502434 + 0 NA promoter-TSS (NM_001293628) promoter-TSS (NM_001293628) -20 NM_001252007 10914 Hs.253726 NM_032632 ENSG00000090060 PAPOLA PAP poly(A) polymerase alpha protein-coding 13333 chr18 23845106 23845210 + 0 NA intron (NM_001127717, intron 30 of 73) intron (NM_001127717, intron 30 of 73) -27862 NM_001127718 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 10133 chr15 55196997 55197161 + 0 NA promoter-TSS (NM_016304) promoter-TSS (NM_016304) -46 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 29805 chr9 108551659 108551707 + 0 NA Intergenic Intergenic 304312 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 28560 chr8 123041861 123041984 + 0 NA intron (NM_024295, intron 1 of 7) CpG 501 NM_001330601 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 3626 chr10 44301277 44301358 + 0 NA Intergenic Intergenic 8567 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 3314 chr10 14397192 14397296 + 0 NA Intergenic Intergenic -13967 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 2208 chr1 183180940 183181044 + 0 NA Intergenic Intergenic -5047 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 4459 chr10 118870678 118870782 + 0 NA Intergenic Intergenic -115484 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 20516 chr3 158571071 158571219 + 0 NA promoter-TSS (NM_001195433) promoter-TSS (NM_001195433) -19 NM_022443 4291 Hs.85195 NM_022443 ENSG00000178053 MLF1 - myeloid leukemia factor 1 protein-coding 12470 chr17 40902143 40902272 + 0 NA Intergenic Intergenic -16964 NM_019010 54474 Hs.84905 NM_019010 ENSG00000171431 KRT20 CD20|CK-20|CK20|K20|KRT21 keratin 20 protein-coding 17850 chr20 31704645 31704749 + 0 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -16810 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 5820 chr11 88398513 88398633 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -60786 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 15976 chr2 96556906 96557010 + 0 NA Intergenic Intergenic 19079 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 12616 chr17 47941388 47941521 + 0 NA promoter-TSS (NR_103856) promoter-TSS (NR_103856) -50 NR_103856 100506325 Hs.656008 NR_103856 ENSG00000234494 SP2-AS1 - SP2 antisense RNA 1 ncRNA 10032 chr15 45705745 45705886 + 0 NA intron (NR_135680, intron 1 of 4) MIRb|SINE|MIR 620 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 27734 chr8 41578404 41578409 + 0 NA promoter-TSS (NR_125824) promoter-TSS (NR_125824) -38 NR_125824 102723729 Hs.586384 NR_125824 LOC102723729 - uncharacterized LOC102723729 ncRNA 18563 chr21 42474290 42474394 + 0 NA intron (NM_080860, intron 8 of 8) intron (NM_080860, intron 8 of 8) 22012 NM_001286506 89765 Hs.661069 NM_080860 ENSG00000160188 RSPH1 CT79|RSP44|RSPH10A|TSA2|TSGA2 radial spoke head 1 homolog protein-coding 18875 chr22 37777370 37777490 + 0 NA TTS (NM_001039141) TTS (NM_001039141) -27677 NM_005318 3005 Hs.745024 NM_005318 ENSG00000189060 H1F0 H10|H1FV H1 histone family member 0 protein-coding 4275 chr10 103368010 103368092 + 0 NA promoter-TSS (NM_139052) promoter-TSS (NM_139052) 98 NM_006951 6877 Hs.96103 NM_006951 ENSG00000148835 TAF5 TAF(II)100|TAF2D|TAFII-100|TAFII100 TATA-box binding protein associated factor 5 protein-coding 4812 chr11 10451037 10451075 + 0 NA intron (NM_000480, intron 1 of 14) CpG 379 NM_000480 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 22928 chr5 96718699 96718803 + 0 NA intron (NM_001042445, intron 1 of 27) intron (NM_001042445, intron 1 of 27) 16091 NM_001042444 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 21034 chr3 195543228 195543456 + 0 NA promoter-TSS (NM_001291504) promoter-TSS (NM_001291504) 59 NM_001291505 5504 Hs.535731 NM_006241 ENSG00000184203 PPP1R2 IPP-2|IPP2 protein phosphatase 1 regulatory inhibitor subunit 2 protein-coding 4103 chr10 94402342 94402478 + 0 NA promoter-TSS (NM_015188) promoter-TSS (NM_015188) -19 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 5693 chr11 76860752 76860898 + 0 NA promoter-TSS (NM_001300953) promoter-TSS (NM_001300953) -48 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA alkaline ceramidase 3 protein-coding 8213 chr13 45253624 45253717 + 0 NA intron (NM_004128, intron 6 of 7) MER44B|DNA|TcMar-Tigger -52630 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 17859 chr20 32040321 32040438 + 0 NA Intergenic Intergenic -11809 NM_001172131 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 14055 chr19 9785841 9785985 + 0 NA Intergenic CpG -17179 NM_001077624 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 3410 chr10 22681784 22681888 + 0 NA intron (NM_005028, intron 1 of 9) MER58B|DNA|hAT-Charlie 32272 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 1295 chr1 91609669 91609773 + 0 NA Intergenic Intergenic 108613 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 29021 chr9 31273084 31273188 + 0 NA Intergenic LTR10F|LTR|ERV1 108354 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 2832 chr1 225691570 225691694 + 0 NA Intergenic Intergenic -38489 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 20702 chr3 177286188 177286292 + 0 NA Intergenic Intergenic -8202 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 3281 chr10 11758060 11758184 + 0 NA intron (NM_024693, intron 4 of 4) intron (NM_024693, intron 4 of 4) 15765 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 26362 chr7 66996801 66996905 + 0 NA promoter-TSS (NR_134540) promoter-TSS (NR_134540) 48 NR_134540 55253 Hs.520917 NM_018264 ENSG00000198874 TYW1 RSAFD1|TYW1A|YPL207W tRNA-yW synthesizing protein 1 homolog protein-coding 25981 chr7 31134555 31134707 + 0 NA Intergenic Intergenic 82170 NM_001199636 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 18775 chr22 30196839 30196943 + 0 NA Intergenic Intergenic 49960 NM_001257135 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 18818 chr22 32644549 32644689 + 0 NA intron (NM_001135774, intron 6 of 13) intron (NM_001135774, intron 6 of 13) -156197 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 10964 chr16 4847257 4847476 + 0 NA promoter-TSS (NM_032569) promoter-TSS (NM_032569) 22 NM_001324097 84656 Hs.387255 NM_032569 ENSG00000140632 GLYR1 BM045|HIBDL|N-PAC|NP60 glyoxylate reductase 1 homolog protein-coding 4055 chr10 90051643 90051747 + 0 NA Intergenic L1PA16|LINE|L1 -94322 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 13146 chr17 81911555 81911579 + 0 NA promoter-TSS (NM_001282203) promoter-TSS (NM_001282203) -90 NM_001256434 5833 Hs.569843 NM_002861 ENSG00000185813 PCYT2 ET phosphate cytidylyltransferase 2, ethanolamine protein-coding 26528 chr7 85186284 85186358 + 0 NA Intergenic CpG -64390 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 7408 chr12 90987215 90987319 + 0 NA intron (NM_004950, intron 2 of 6) LTR19A|LTR|ERV1 17759 NM_004950 1833 Hs.435680 NM_004950 ENSG00000083782 EPYC DSPG3|PGLB|Pg-Lb|SLRR3B epiphycan protein-coding 22368 chr5 35857941 35858045 + 0 NA intron (NM_002185, intron 1 of 7) intron (NM_002185, intron 1 of 7) 1118 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 13655 chr18 59427012 59427151 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger -67805 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 29083 chr9 35815089 35815221 + 0 NA promoter-TSS (NM_032593) promoter-TSS (NM_032593) -110 NM_032593 84681 Hs.70573 NM_032593 ENSG00000137133 HINT2 HIT-17 histidine triad nucleotide binding protein 2 protein-coding 21174 chr4 10096328 10096396 + 0 NA intron (NM_005112, intron 2 of 11) intron (NM_005112, intron 2 of 11) -17670 NR_036090 100423011 NR_036090 ENSG00000264931 MIR3138 mir-3138 microRNA 3138 ncRNA 11670 chr16 76805252 76805356 + 0 NA Intergenic Intergenic -63632 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 20024 chr3 122258885 122258989 + 0 NA intron (NM_001178065, intron 3 of 6) intron (NM_001178065, intron 3 of 6) -66227 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 20010 chr3 120742556 120742705 + 0 NA promoter-TSS (NM_173825) promoter-TSS (NM_173825) -81 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 12345 chr17 33871764 33871905 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 284972 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 29415 chr9 84996258 84996287 + 0 NA intron (NM_001018064, intron 15 of 16) intron (NM_001018064, intron 15 of 16) 325895 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 8236 chr13 47215913 47215962 + 0 NA Intergenic Intergenic -318861 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 10113 chr15 52208462 52208556 + 0 NA intron (NM_018728, intron 36 of 40) intron (NM_018728, intron 36 of 40) -17141 NM_016194 10681 Hs.155090 NM_006578 ENSG00000069966 GNB5 GB5|IDDCA|LADCI G protein subunit beta 5 protein-coding 23733 chr5 172778240 172778344 + 0 NA Intergenic Intergenic -7092 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 5126 chr11 34105478 34105680 + 0 NA promoter-TSS (NM_001144030) promoter-TSS (NM_001144030) 15 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|NET43 N-acetyltransferase 10 protein-coding 29291 chr9 76379647 76379839 + 0 NA Intergenic Intergenic 14785 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 10892 chr16 2537822 2537933 + 0 NA promoter-TSS (NM_001261816) promoter-TSS (NM_001261816) -87 NM_031268 5170 Hs.459691 NM_002613 ENSG00000140992 PDPK1 PDK1|PDPK2|PDPK2P|PRO0461 3-phosphoinositide dependent protein kinase 1 protein-coding 28365 chr8 103255985 103256149 + 0 NA Intergenic Intergenic -42366 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 4136 chr10 96267286 96267390 + 0 NA intron (NR_047680, intron 1 of 15) intron (NR_047680, intron 1 of 15) 4178 NR_047681 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B-cell linker protein-coding 14271 chr19 18522383 18522434 + 0 NA promoter-TSS (NM_006532) promoter-TSS (NM_006532) -281 NM_006532 8178 Hs.515260 NM_006532 ENSG00000105656 ELL C19orf17|ELL1|MEN|PPP1R68 elongation factor for RNA polymerase II protein-coding 10277 chr15 64536291 64536395 + 0 NA intron (NM_015042, intron 1 of 8) MLT1N2|LTR|ERVL-MaLR 36923 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 26400 chr7 73725805 73725956 + 0 NA Intergenic Intergenic -6193 NM_004603 6804 Hs.647024 NM_004603 ENSG00000106089 STX1A HPC-1|P35-1|STX1|SYN1A syntaxin 1A protein-coding 25155 chr6 131628156 131628260 + 0 NA promoter-TSS (NM_015979) promoter-TSS (NM_015979) 31 NM_004830 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 3801 chr10 68075260 68075364 + 0 NA promoter-TSS (NM_022079) promoter-TSS (NM_022079) 34 NM_001278186 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 28475 chr8 117847786 117847890 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 263981 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 29760 chr9 106682589 106682693 + 0 NA Intergenic Intergenic 66583 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 19659 chr3 71684969 71685073 + 0 NA intron (NM_001134650, intron 7 of 7) intron (NM_001134650, intron 7 of 7) 40354 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 16584 chr2 164514732 164514868 + 0 NA intron (NM_004490, intron 6 of 13) L1PB1|LINE|L1 53750 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 20619 chr3 169773289 169773424 + 0 NA promoter-TSS (NM_001185119) promoter-TSS (NM_001185119) 291 NM_001185118 55892 Hs.507025 NM_018657 ENSG00000085274 MYNN OSZF|SBBIZ1|ZBTB31|ZNF902 myoneurin protein-coding 251 chr1 17215060 17215164 + 0 NA intron (NM_013358, intron 1 of 15) intron (NM_013358, intron 1 of 15) 9986 NM_013358 29943 Hs.412941 NM_013358 ENSG00000142623 PADI1 HPAD10|PAD1|PDI|PDI1 peptidyl arginine deiminase 1 protein-coding 24569 chr6 42747020 42747111 + 0 NA promoter-TSS (NM_003192) promoter-TSS (NM_003192) 107 NM_001318819 23506 Hs.658033 NM_015349 ENSG00000112624 GLTSCR1L KIAA0240 GLTSCR1 like protein-coding 21937 chr4 156476509 156476548 + 0 NA Intergenic Intergenic 494866 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 19049 chr22 50030307 50030398 + 0 NA Intergenic CpG -17726 NM_001001694 400935 Hs.526712 NM_001001694 ENSG00000188263 IL17REL - interleukin 17 receptor E like protein-coding 26131 chr7 42107575 42107679 + 0 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 129392 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 15177 chr2 24360578 24360584 + 0 NA promoter-TSS (NM_006277) promoter-TSS (NM_006277) -53 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 10648 chr15 88638780 88638977 + 0 NA 5' UTR (NM_002201, exon 1 of 4) 5' UTR (NM_002201, exon 1 of 4) 135 NM_002201 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 10492 chr15 77505684 77505788 + 0 NA Intergenic Intergenic -19859 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 4986 chr11 19712716 19712795 + 0 NA promoter-TSS (NM_001244963) promoter-TSS (NM_001244963) -580 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 7861 chr12 124993693 124993696 + 0 NA promoter-TSS (NM_080626) promoter-TSS (NM_080626) 46 NM_080626 140707 Hs.596464 NM_080626 ENSG00000184992 BRI3BP BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19 BRI3 binding protein protein-coding 5634 chr11 73073035 73073123 + 0 NA intron (NM_014824, intron 3 of 19) intron (NM_014824, intron 3 of 19) 69019 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|SH3MD3 FCH and double SH3 domains 2 protein-coding 24423 chr6 33711693 33711903 + 0 NA promoter-TSS (NM_032340) promoter-TSS (NM_032340) -47 NM_032340 84300 Hs.732448 NM_032340 ENSG00000137288 UQCC2 C6orf125|Cbp6|M19|MNF1|bA6B20.2 ubiquinol-cytochrome c reductase complex assembly factor 2 protein-coding 22125 chr4 188021989 188022093 + 0 NA Intergenic MER39|LTR|ERV1 26270 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 11677 chr16 77722502 77722624 + 0 NA promoter-TSS (NM_001105663) promoter-TSS (NM_001105663) 71 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 21325 chr4 44726504 44726668 + 0 NA promoter-TSS (NR_073094) promoter-TSS (NR_073094) 48 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 24466 chr6 36590350 36590454 + 0 NA Intergenic Intergenic -3911 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 22022 chr4 173335224 173335375 + 0 NA promoter-TSS (NM_002129) promoter-TSS (NM_002129) -855 NM_002129 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 5999 chr11 105553146 105553250 + 0 NA Intergenic MER72B|LTR|ERV1 -56875 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4 glutamate ionotropic receptor AMPA type subunit 4 protein-coding 19569 chr3 56132404 56132508 + 0 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -279862 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 30448 chrX 3345297 3345401 + 0 NA intron (NM_015419, intron 1 of 6) CpG 1294 NM_015419 25878 Hs.369422 NM_015419 ENSG00000101825 MXRA5 - matrix remodeling associated 5 protein-coding 23543 chr5 151571363 151571467 + 0 NA Intergenic Intergenic -2471 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 20331 chr3 143972017 143972172 + 0 NA 5' UTR (NM_173552, exon 1 of 3) 5' UTR (NM_173552, exon 1 of 3) 296 NM_173552 205428 Hs.288954 NM_173552 ENSG00000181744 C3orf58 DIA1|GoPro49|HASF chromosome 3 open reading frame 58 protein-coding 16213 chr2 119366840 119366999 + 0 NA promoter-TSS (NM_001178043) promoter-TSS (NM_001178043) -5 NM_001178043 1622 Hs.78888 NM_020548 ENSG00000155368 DBI ACBD1|ACBP|CCK-RP|EP diazepam binding inhibitor, acyl-CoA binding protein protein-coding 24970 chr6 106746773 106746877 + 0 NA intron (NR_033557, intron 1 of 6) intron (NR_033557, intron 1 of 6) -37300 NR_030314 693172 NR_030314 ENSG00000207577 MIR587 MIRN587|hsa-mir-587 microRNA 587 ncRNA 5520 chr11 66480188 66480292 + 0 NA promoter-TSS (NR_120586) promoter-TSS (NR_120586) 9 NR_120586 101928069 Hs.523816 NR_120586 ENSG00000255517 LOC101928069 - uncharacterized LOC101928069 ncRNA 25089 chr6 123074784 123074888 + 0 NA Intergenic AluSx|SINE|Alu 78865 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 15131 chr2 19911868 19912031 + 0 NA 3' UTR (NM_001006657, exon 28 of 28) 3' UTR (NM_001006657, exon 28 of 28) -9963 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 8051 chr13 30307030 30307146 + 0 NA promoter-TSS (NM_001014380) promoter-TSS (NM_001014380) -34 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 27445 chr8 17802807 17802951 + 0 NA Intergenic Intergenic -1962 NM_001001924 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 13827 chr18 80108845 80109007 + 0 NA promoter-TSS (NM_014913) promoter-TSS (NM_014913) -105 NM_014913 22850 Hs.131915 NM_014913 ENSG00000101544 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 16090 chr2 108584041 108584166 + 0 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) -4198 NM_004987 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 24357 chr6 31246089 31246244 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 25970 NM_002117 3107 Hs.656020 NM_002117 ENSG00000204525 HLA-C D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1 major histocompatibility complex, class I, C protein-coding 25602 chr7 5562635 5562739 + 0 NA Intergenic Intergenic -30118 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 9772 chr14_GL000225v1_random 85592 85744 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 10049 chr15 48723359 48723527 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -77655 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 30029 chr9 121121665 121121813 + 0 NA promoter-TSS (NM_001330762) promoter-TSS (NM_001330762) -31 NM_001330762 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 11181 chr16 28554087 28554203 + 0 NA intron (NM_138414, intron 1 of 9) CpG 217 NM_138414 112869 Hs.655476 NM_138414 ENSG00000176476 SGF29 CCDC101|STAF36|TDRD29 SAGA complex associated factor 29 protein-coding 1108 chr1 70205544 70205738 + 0 NA promoter-TSS (NM_017768) promoter-TSS (NM_017768) 37 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 28515 chr8 119641802 119641823 + 0 NA intron (NM_001330600, intron 1 of 25) intron (NM_001330600, intron 1 of 25) -2946 NM_006209 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 28222 chr8 94822778 94822857 + 0 NA promoter-TSS (NM_017864) promoter-TSS (NM_017864) -473 NR_073444 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 26714 chr7 100852262 100852400 + 0 NA promoter-TSS (NM_020246) promoter-TSS (NM_020246) -388 NM_001267814 56996 Hs.521087 NM_020246 ENSG00000146828 SLC12A9 CCC6|CIP1|WO3.3|hCCC6 solute carrier family 12 member 9 protein-coding 22346 chr5 33272443 33272547 + 0 NA Intergenic Intergenic -168201 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 17823 chr20 25633137 25633241 + 0 NA intron (NR_126467, intron 2 of 4) L2|LINE|L2 8964 NR_126467 102724826 Hs.633621 NR_126465 ENSG00000213742 ZNF337-AS1 - ZNF337 antisense RNA 1 ncRNA 2760 chr1 221839935 221840095 + 0 NA intron (NR_125989, intron 2 of 3) intron (NR_125989, intron 2 of 3) 651 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 843 chr1 47583112 47583216 + 0 NA Intergenic L3|LINE|CR1 -145847 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 18967 chr22 41946799 41946903 + 0 NA promoter-TSS (NM_001304370) promoter-TSS (NM_001304370) -97 NM_001304370 79019 Hs.208912 NM_024053 ENSG00000100162 CENPM C22orf18|CENP-M|PANE1 centromere protein M protein-coding 17084 chr2 216498750 216498889 + 0 NA promoter-TSS (NM_000998) promoter-TSS (NM_000998) 22 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 6499 chr12 6226825 6226892 + 0 NA intron (NM_001330312, intron 2 of 7) intron (NM_001330312, intron 2 of 7) 26542 NM_001769 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 8926 chr14 39432893 39433034 + 0 NA promoter-TSS (NM_203301) promoter-TSS (NM_203301) -463 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 14105 chr19 11142693 11142797 + 0 NA Intergenic Intergenic 13067 NM_001317032 147841 Hs.381225 NM_182513 ENSG00000161888 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 2315 chr1 198159111 198159215 + 0 NA intron (NM_133494, intron 1 of 9) CpG 2185 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 15089 chr2 16915334 16915502 + 0 NA Intergenic HERVL-int|LTR|ERVL -249552 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 22393 chr5 37771838 37771942 + 0 NA Intergenic Intergenic 62932 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 14436 chr19 39125673 39125777 + 0 NA promoter-TSS (NM_001014831) promoter-TSS (NM_001014831) -55 NM_001014834 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 11438 chr16 58129524 58129627 + 0 NA promoter-TSS (NR_136632) promoter-TSS (NR_136632) -150 NR_136632 29105 Hs.532755 NM_013242 ENSG00000070761 CFAP20 C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 14358 chr19 34359262 34359394 + 0 NA Intergenic CpG -5412 NM_001289789 2821 Hs.466471 NM_000175 ENSG00000105220 GPI AMF|GNPI|NLK|PGI|PHI|SA-36|SA36 glucose-6-phosphate isomerase protein-coding 13722 chr18 63850795 63850919 + 0 NA Intergenic Intergenic -36848 NM_002575 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 22103 chr4 185112223 185112408 + 0 NA Intergenic Intergenic -30948 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 17845 chr20 31605078 31605214 + 0 NA promoter-TSS (NM_181353) promoter-TSS (NM_181353) -137 NM_181353 3397 Hs.504609 NM_002165 ENSG00000125968 ID1 ID|bHLHb24 inhibitor of DNA binding 1, HLH protein protein-coding 6426 chr12 401463 401624 + 0 NA promoter-TSS (NM_001130146) promoter-TSS (NM_001130146) -32 NM_032358 84318 Hs.631656 NM_032358 ENSG00000120647 CCDC77 - coiled-coil domain containing 77 protein-coding 29371 chr9 82490074 82490184 + 0 NA Intergenic Intergenic 501357 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 26071 chr7 37902270 37902374 + 0 NA Intergenic Intergenic 14601 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 14536 chr19 44890790 44890910 + 0 NA promoter-TSS (NM_001128916) promoter-TSS (NM_001128916) -370 NM_001128917 10452 Hs.655909 NM_006114 ENSG00000130204 TOMM40 C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40 translocase of outer mitochondrial membrane 40 protein-coding 27519 chr8 22703562 22703640 + 0 NA Intergenic CpG -10299 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 16598 chr2 165293811 165293995 + 0 NA promoter-TSS (NM_021007) promoter-TSS (NM_021007) 72 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 1994 chr1 165698612 165698740 + 0 NA promoter-TSS (NR_036683) promoter-TSS (NR_036683) -13 NM_000696 223 Hs.2533 NM_000696 ENSG00000143149 ALDH9A1 ALDH4|ALDH7|ALDH9|E3|TMABADH aldehyde dehydrogenase 9 family member A1 protein-coding 7336 chr12 82685881 82685925 + 0 NA Intergenic Intergenic -1252 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 27225 chr7 151057978 151058134 + 0 NA promoter-TSS (NM_001199692) promoter-TSS (NM_001199692) -91 NM_001164410 1020 Hs.647078 NM_004935 ENSG00000164885 CDK5 LIS7|PSSALRE cyclin dependent kinase 5 protein-coding 13650 chr18 59139692 59139820 + 0 NA promoter-TSS (NM_001307941) promoter-TSS (NM_001307941) -101 NM_033280 90701 Hs.45107 NM_033280 ENSG00000166562 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C, signal peptidase complex subunit protein-coding 16791 chr2 186771956 186772145 + 0 NA Intergenic L1PBa|LINE|L1 77120 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 30312 chr9 133149454 133149590 + 0 NA promoter-TSS (NM_001042368) promoter-TSS (NM_001042368) -302 NM_001042368 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 1136 chr1 76998771 76998885 + 0 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) -61315 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 30895 chrX 103404715 103404819 + 0 NA Intergenic Intergenic 27586 NM_014380 27018 Hs.448588 NM_014380 ENSG00000166681 BEX3 Bex|DXS6984E|HGR74|NADE|NGFRAP1 brain expressed X-linked 3 protein-coding 1175 chr1 83086401 83086505 + 0 NA Intergenic LTR40a|LTR|ERVL -100245 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 21250 chr4 24382501 24382605 + 0 NA intron (NM_001330751, intron 1 of 14) intron (NM_001330751, intron 1 of 14) 90276 NM_001330751 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 23726 chr5 172641047 172641124 + 0 NA promoter-TSS (NM_001308177) promoter-TSS (NM_001308177) -181 NM_001308178 54492 Hs.91521 NM_001142651 ENSG00000214357 NEURL1B NEURL3|hNeur2|neur2 neuralized E3 ubiquitin protein ligase 1B protein-coding 20664 chr3 172523369 172523439 + 0 NA promoter-TSS (NM_001190943) promoter-TSS (NM_001190943) 71 NM_001190943 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 26587 chr7 92245862 92246006 + 0 NA promoter-TSS (NM_004912) promoter-TSS (NM_004912) -20 NM_001013406 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1, ankyrin repeat containing protein-coding 19671 chr3 73029394 73029498 + 0 NA intron (NM_001318027, intron 2 of 7) L2a|LINE|L2 -32213 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus-like nucleoprotein 2 protein-coding 1683 chr1 150538070 150538195 + 0 NA Intergenic Intergenic -11237 NM_001288608 54507 Hs.516243 NM_019032 ENSG00000143382 ADAMTSL4 ADAMTSL-4|ECTOL2|TSRC1 ADAMTS like 4 protein-coding 27819 chr8 52714485 52714589 + 0 NA promoter-TSS (NM_014781) promoter-TSS (NM_014781) -71 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 20313 chr3 142724046 142724141 + 0 NA promoter-TSS (NM_001251845) promoter-TSS (NM_001251845) -331 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 15675 chr2 64989338 64989442 + 0 NA promoter-TSS (NM_003038) promoter-TSS (NM_003038) 29 NM_003038 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 1382 chr1 98326245 98326397 + 0 NA Intergenic AluJr4|SINE|Alu 115610 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 18085 chr20 45345680 45345769 + 0 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 2700 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 15469 chr2 45611285 45611447 + 0 NA promoter-TSS (NM_018079) promoter-TSS (NM_018079) -72 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 1452 chr1 108561819 108561923 + 0 NA intron (NM_001010883, intron 1 of 10) intron (NM_001010883, intron 1 of 10) 1522 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 28489 chr8 118380022 118380042 + 0 NA intron (NM_001101676, intron 3 of 4) Tigger16a|DNA|TcMar-Tigger -240969 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 21353 chr4 49635140 49635294 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 648575 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 15529 chr2 50395649 50395753 + 0 NA intron (NM_001135659, intron 18 of 23) MIRb|SINE|MIR -47945 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 19937 chr3 115658403 115658507 + 0 NA intron (NM_002045, intron 1 of 2) CpG 35151 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 5771 chr11 85719109 85719274 + 0 NA promoter-TSS (NM_001289610) promoter-TSS (NM_001289610) -11 NM_206929 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 26278 chr7 51162820 51162953 + 0 NA intron (NM_001287438, intron 5 of 7) intron (NM_001287438, intron 5 of 7) 153975 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 26264 chr7 50632782 50632886 + 0 NA intron (NM_001001549, intron 4 of 14) L1PB4|LINE|L1 -67377 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 1337 chr1 94418335 94418433 + 0 NA promoter-TSS (NM_001122674) promoter-TSS (NM_001122674) 7 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 11355 chr16 53130930 53131034 + 0 NA intron (NM_025134, intron 1 of 38) CpG -24944 NM_001308319 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 6524 chr12 6540609 6540769 + 0 NA intron (NM_001039670, intron 9 of 9) CpG 5470 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 13037 chr17 76354059 76354246 + 0 NA promoter-TSS (NM_001330503) promoter-TSS (NM_001330503) -3 NM_001330503 5635 Hs.77498 NM_002766 ENSG00000161542 PRPSAP1 PAP39 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding 3837 chr10 70387466 70387480 + 0 NA Intergenic Intergenic -4823 NM_001278211 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 24977 chr6 107028178 107028282 + 0 NA promoter-TSS (NM_001142468) promoter-TSS (NM_001142468) 58 NM_001142468 51250 Hs.486084 NM_016487 ENSG00000130349 C6orf203 HSPC230|PRED31 chromosome 6 open reading frame 203 protein-coding 22096 chr4 184733338 184733442 + 0 NA intron (NR_104593, intron 1 of 11) CpG 742 NM_024629 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 16864 chr2 196239778 196239882 + 0 NA intron (NM_020760, intron 21 of 28) intron (NM_020760, intron 21 of 28) -20194 NR_110225 101927482 Hs.191841 NR_110225 LOC101927482 - uncharacterized LOC101927482 ncRNA 3018 chr1 235866977 235867112 + 0 NA promoter-TSS (NM_000081) promoter-TSS (NM_000081) -117 NM_000081 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 9645 chr14 98906555 98906684 + 0 NA Intergenic Intergenic 195006 NM_001346978 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 11594 chr16 71625946 71626022 + 0 NA promoter-TSS (NM_052858) promoter-TSS (NM_052858) -169 NM_001271329 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 2604 chr1 211514098 211514243 + 0 NA Intergenic Intergenic -21253 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3 protein-coding 8795 chr14 31263742 31263875 + 0 NA Intergenic Intergenic -56285 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 4974 chr11 19276979 19277083 + 0 NA Intergenic Intergenic -35376 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 26808 chr7 108299424 108299513 + 0 NA intron (NM_001193583, intron 3 of 29) intron (NM_001193583, intron 3 of 29) -59298 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 17160 chr2 222860895 222860988 + 0 NA promoter-TSS (NM_004457) promoter-TSS (NM_004457) -73 NM_004457 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|PRO2194 acyl-CoA synthetase long-chain family member 3 protein-coding 12079 chr17 8288340 8288444 + 0 NA promoter-TSS (NM_001177801) promoter-TSS (NM_001177801) -105 NM_001330127 29098 Hs.408233 NM_016492 ENSG00000108961 RANGRF HSPC165|HSPC236|MOG1|RANGNRF RAN guanine nucleotide release factor protein-coding 24863 chr6 83867688 83867792 + 0 NA intron (NM_016230, intron 2 of 15) LTR18A|LTR|ERVL 8089 NM_016230 51167 Hs.5741 NM_016230 ENSG00000065615 CYB5R4 NCB5OR|cb5/cb5R|dJ676J13.1 cytochrome b5 reductase 4 protein-coding 17405 chr2 241637577 241637616 + 0 NA promoter-TSS (NM_015963) promoter-TSS (NM_015963) -16 NM_013325 23192 Hs.283610 NM_013325 ENSG00000168397 ATG4B APG4B|AUTL1 autophagy related 4B cysteine peptidase protein-coding 9479 chr14 81533830 81534066 + 0 NA promoter-TSS (NM_005065) promoter-TSS (NM_005065) -87 NM_005065 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L PRO1063|SEL1-LIKE|SEL1L1 SEL1L ERAD E3 ligase adaptor subunit protein-coding 16757 chr2 180980282 180980393 + 0 NA promoter-TSS (NM_001278555) promoter-TSS (NM_001278555) -48 NM_182678 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 18835 chr22 35627700 35627811 + 0 NA Intergenic Intergenic -4401 NM_203377 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 15295 chr2 30274891 30275007 + 0 NA Intergenic Intergenic 43418 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - limb bud and heart development protein-coding 10676 chr15 89782121 89782173 + 0 NA Intergenic MIR3|SINE|MIR 5789 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 17993 chr20 38893921 38894025 + 0 NA intron (NM_015568, intron 3 of 10) intron (NM_015568, intron 3 of 10) -32339 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 17898 chr20 34350361 34350490 + 0 NA Intergenic LTR31|LTR|ERV1 -12810 NM_001324197 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 12774 chr17 58403498 58403602 + 0 NA promoter-TSS (NM_001305545) promoter-TSS (NM_001305545) -829 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 745 chr1 42943293 42943424 + 0 NA intron (NM_006516, intron 1 of 9) intron (NM_006516, intron 1 of 9) -15691 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 3691 chr10 52818124 52818228 + 0 NA Intergenic Intergenic -46476 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 7779 chr12 121672639 121672694 + 0 NA Intergenic Intergenic -3012 NM_173855 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 16036 chr2 101360341 101360405 + 0 NA intron (NM_153836, intron 2 of 3) LTR34|LTR|ERV1 27130 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 20723 chr3 178170846 178170950 + 0 NA Intergenic Intergenic -248303 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 29798 chr9 108272181 108272235 + 0 NA Intergenic Intergenic 583787 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 30270 chr9 131366921 131367000 + 0 NA Intergenic LTR35A|LTR|ERV1 -63130 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 18047 chr20 43590847 43590981 + 0 NA 5' UTR (NM_001303459, exon 1 of 13) 5' UTR (NM_001303459, exon 1 of 13) 301 NM_001323581 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 18749 chr22 28800565 28800723 + 0 NA promoter-TSS (NM_001079539) promoter-TSS (NM_001079539) -72 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 31196 chrX 154604105 154604306 + 0 NA Intergenic Intergenic 15066 NM_001327 1485 Hs.534310 NM_001327 ENSG00000184033 CTAG1B CT6.1|CTAG|CTAG1|ESO1|LAGE-2|LAGE2B|NY-ESO-1 cancer/testis antigen 1B protein-coding 26621 chr7 94644319 94644423 + 0 NA intron (NM_001346715, intron 1 of 10) intron (NM_001346715, intron 1 of 10) 11838 NM_001099400 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 13750 chr18 70044722 70044826 + 0 NA intron (NM_173630, intron 40 of 48) MER44B|DNA|TcMar-Tigger -87598 NM_006566 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 26248 chr7 48839256 48839360 + 0 NA Intergenic Intergenic -85253 NR_003595 168448 Hs.567757 NM_152627 CDC14C CDC14B2|CDC14Bretro|CDC14CP cell division cycle 14C, pseuodgene pseudo 15687 chr2 65567337 65567485 + 0 NA Intergenic Intergenic -134889 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 30143 chr9 127451378 127451541 + 0 NA promoter-TSS (NM_138361) promoter-TSS (NM_138361) -27 NM_000976 6136 Hs.408054 NM_000976 ENSG00000197958 RPL12 L12 ribosomal protein L12 protein-coding 16717 chr2 177325626 177325730 + 0 NA intron (NR_026966, intron 5 of 8) intron (NR_026966, intron 5 of 8) -11796 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 4182 chr10 98134524 98134690 + 0 NA promoter-TSS (NM_001256619) promoter-TSS (NM_001256619) -17 NM_001256619 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 6279 chr11 125075964 125076068 + 0 NA intron (NM_198277, intron 1 of 18) intron (NM_198277, intron 1 of 18) 12899 NM_198277 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 26477 chr7 79050670 79050755 + 0 NA intron (NM_012301, intron 1 of 21) intron (NM_012301, intron 1 of 21) 41724 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 27435 chr8 16518132 16518187 + 0 NA Intergenic LTR43B|LTR|ERV1 -325368 NM_138715 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 26409 chr7 73851555 73851702 + 0 NA Intergenic L1M5|LINE|L1 -9103 NM_152559 155368 Hs.647042 NM_152559 ENSG00000165171 WBSCR27 - Williams Beuren syndrome chromosome region 27 protein-coding 9822 chr15 31398076 31398209 + 0 NA intron (NM_001302461, intron 1 of 1) intron (NM_001302461, intron 1 of 1) 71287 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1619 chr1 143185089 143185243 + 0 NA Intergenic Intergenic 237426 NR_027354 645166 Hs.744183 NR_027354 LOC645166 - lymphocyte-specific protein 1 pseudogene pseudo 30342 chr9 135479040 135479160 + 0 NA promoter-TSS (NM_014811) promoter-TSS (NM_014811) -702 NM_014811 9858 Hs.533260 NM_014811 ENSG00000196422 PPP1R26 KIAA0649|NRBE3 protein phosphatase 1 regulatory subunit 26 protein-coding 5881 chr11 94678351 94678485 + 0 NA intron (NR_135096, intron 3 of 6) intron (NR_135096, intron 3 of 6) 61937 NR_135093 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 5219 chr11 45340103 45340254 + 0 NA Intergenic Intergenic -15193 NR_120557 101928812 Hs.444059 NR_120557 ENSG00000254427 LOC101928812 - uncharacterized LOC101928812 ncRNA 7598 chr12 107093825 107093929 + 0 NA promoter-TSS (NM_004075) promoter-TSS (NM_004075) -20 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 23288 chr5 137078438 137078542 + 0 NA intron (NM_004598, intron 5 of 10) intron (NM_004598, intron 5 of 10) -49707 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 4007 chr10 84525185 84525266 + 0 NA Intergenic MER61E|LTR|ERV1 100043 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 6567 chr12 8243533 8243666 + 0 NA promoter-TSS (NR_024254) promoter-TSS (NR_024254) -653 NR_024254 653113 Hs.661749 NR_024254 FAM86FP - family with sequence similarity 86, member A pseudogene pseudo 12648 chr17 49708139 49708283 + 0 NA promoter-TSS (NM_001278784) promoter-TSS (NM_001278784) -260 NM_005827 10237 Hs.154073 NM_005827 ENSG00000121073 SLC35B1 UGTREL1 solute carrier family 35 member B1 protein-coding 13235 chr18 5237770 5237874 + 0 NA promoter-TSS (NR_015389) promoter-TSS (NR_015389) 207 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 11241 chr16 30762057 30762204 + 0 NA promoter-TSS (NM_001286572) promoter-TSS (NM_001286572) 114 NM_001014979 90835 Hs.724010 NM_001014979 ENSG00000196118 CCDC189 C16orf93 coiled-coil domain containing 189 protein-coding 24742 chr6 56954723 56954796 + 0 NA promoter-TSS (NM_001318539) promoter-TSS (NM_001318539) -131 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 31082 chrX 134764291 134764452 + 0 NA promoter-TSS (NM_001316887) promoter-TSS (NM_001316887) -49 NM_001316887 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2L placenta specific 1 protein-coding 25139 chr6 128570496 128570600 + 0 NA Intergenic Intergenic -49874 NM_001291984 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type K protein-coding 12067 chr17 8156648 8156797 + 0 NA Intergenic CpG -4287 NM_002616 5187 Hs.445534 NM_002616 ENSG00000179094 PER1 PER|RIGUI|hPER period circadian clock 1 protein-coding 20473 chr3 156382555 156382658 + 0 NA intron (NM_001308222, intron 1 of 12) MLT1I|LTR|ERVL-MaLR 64330 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 17007 chr2 208254007 208254111 + 0 NA 5' UTR (NM_001282387, exon 1 of 10) 5' UTR (NM_001282387, exon 1 of 10) 244 NM_001282387 3417 Hs.593422 NM_005896 ENSG00000138413 IDH1 HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD isocitrate dehydrogenase (NADP(+)) 1, cytosolic protein-coding 30633 chrX 41384182 41384362 + 0 NA Intergenic Intergenic 50110 NR_126094 1654 Hs.728563 NM_001356 ENSG00000215301 DDX3X CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102 DEAD-box helicase 3, X-linked protein-coding 30517 chrX 15493274 15493410 + 0 NA 5' UTR (NM_001018109, exon 1 of 10) 5' UTR (NM_001018109, exon 1 of 10) 246 NM_003662 8544 Hs.495728 NM_003662 ENSG00000087842 PIR - pirin protein-coding 14882 chr19 58558943 58559091 + 0 NA promoter-TSS (NM_003969) promoter-TSS (NM_003969) -41 NM_003969 9040 Hs.406068 NM_003969 ENSG00000130725 UBE2M UBC-RS2|UBC12|hUbc12 ubiquitin conjugating enzyme E2 M protein-coding 6318 chr11 128207896 128208046 + 0 NA Intergenic Intergenic 314339 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 30726 chrX 50839010 50839114 + 0 NA Intergenic MamRep38|DNA|hAT -25018 NM_020717 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP shroom family member 4 protein-coding 292 chr1 19925387 19925392 + 0 NA Intergenic Intergenic -1772 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 10082 chr15 50798013 50798140 + 0 NA Intergenic Intergenic -32363 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 17936 chr20 35742378 35742386 + 0 NA promoter-TSS (NM_001242599) promoter-TSS (NM_001242599) -46 NM_004902 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 17141 chr2 220660449 220660585 + 0 NA Intergenic Intergenic -753952 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 6455 chr12 2959286 2959426 + 0 NA promoter-TSS (NM_003213) promoter-TSS (NM_003213) 44 NM_201441 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 19116 chr3 7875960 7876064 + 0 NA Intergenic L1MC4|LINE|L1 140295 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 29819 chr9 109036200 109036324 + 0 NA exon (NM_032012, exon 16 of 18) exon (NM_032012, exon 16 of 18) 10036 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 4039 chr10 88703437 88703541 + 0 NA Intergenic Intergenic -21055 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 2445 chr1 203861397 203861603 + 0 NA promoter-TSS (NM_001304464) promoter-TSS (NM_001304464) -85 NM_001304464 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 10683 chr15 90165800 90165969 + 0 NA Intergenic Intergenic -19036 NM_001324030 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 26471 chr7 77798616 77798734 + 0 NA promoter-TSS (NM_032936) promoter-TSS (NM_032936) -117 NM_001127360 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 25805 chr7 20341026 20341084 + 0 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -9293 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 7232 chr12 65695679 65695783 + 0 NA Intergenic LFSINE_Vert|SINE|tRNA -53359 NR_120431 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 8205 chr13 44758857 44759037 + 0 NA Intergenic Intergenic 50683 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 5714 chr11 78645376 78645480 + 0 NA Intergenic Intergenic -70564 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 17000 chr2 207792288 207792392 + 0 NA Intergenic Intergenic -22921 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 16233 chr2 120553033 120553137 + 0 NA Intergenic Intergenic -86736 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 9045 chr14 55027121 55027175 + 0 NA promoter-TSS (NM_007086) promoter-TSS (NM_007086) 22 NM_199421 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 5778 chr11 85828449 85828553 + 0 NA Intergenic Intergenic -17342 NM_001289608 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 27559 chr8 24994852 24994956 + 0 NA Intergenic L1ME4a|LINE|L1 -38035 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 23212 chr5 132422808 132422929 + 0 NA intron (NR_045116, intron 2 of 3) intron (NR_045116, intron 2 of 3) 12095 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 17508 chr20 4546919 4547023 + 0 NA Intergenic Intergenic -139180 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 18148 chr20 48538491 48538595 + 0 NA Intergenic LTR23|LTR|ERV1 178632 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 8873 chr14 35669980 35670079 + 0 NA intron (NM_194301, intron 25 of 39) intron (NM_194301, intron 25 of 39) 92896 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 10348 chr15 68277625 68277763 + 0 NA promoter-TSS (NM_015322) promoter-TSS (NM_015322) -109 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 241 chr1 16904914 16904955 + 0 NA Intergenic CpG 8954 NR_004408 26869 NR_004408 ENSG00000207513 RNU1-3 HSD4|RNU1G3 RNA, U1 small nuclear 3 snRNA 28903 chr9 5833056 5833103 + 0 NA promoter-TSS (NM_024896) promoter-TSS (NM_024896) 2 NM_024896 79956 Hs.591078 NM_024896 ENSG00000099219 ERMP1 FXNA|KIAA1815|bA207C16.3 endoplasmic reticulum metallopeptidase 1 protein-coding 2561 chr1 209411768 209411848 + 0 NA Intergenic Intergenic -17015 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene protein-coding 8066 chr13 30829287 30829391 + 0 NA Intergenic LTR16B1|LTR|ERVL 26133 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 22007 chr4 170026400 170026504 + 0 NA promoter-TSS (NM_001301647) promoter-TSS (NM_001301647) -22 NM_001301647 9848 Hs.593942 NM_021647 ENSG00000198948 MFAP3L NYD-sp9 microfibrillar associated protein 3 like protein-coding 6007 chr11 106424200 106424304 + 0 NA Intergenic Intergenic 172845 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 26452 chr7 76318226 76318330 + 0 NA Intergenic CpG 15720 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 1970 chr1 164623080 164623239 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 63799 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 4697 chr11 2533905 2533985 + 0 NA intron (NM_000218, intron 2 of 15) intron (NM_000218, intron 2 of 15) 72491 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 14709 chr19 49929910 49929923 + 0 NA promoter-TSS (NM_001258017) promoter-TSS (NM_001258017) -185 NM_016553 23636 Hs.574492 NM_012346 ENSG00000213024 NUP62 IBSN|SNDI|p62 nucleoporin 62 protein-coding 4125 chr10 95656785 95656885 + 0 NA promoter-TSS (NM_001323415) promoter-TSS (NM_001323415) -25 NM_001323419 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 29853 chr9 110357709 110357813 + 0 NA Intergenic Intergenic -19877 NM_001003936 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 27634 chr8 29556397 29556541 + 0 NA Intergenic Intergenic 191640 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 3675 chr10 50605531 50605650 + 0 NA intron (NM_147156, intron 1 of 10) intron (NM_147156, intron 1 of 10) 18387 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 4765 chr11 7605574 7605729 + 0 NA promoter-TSS (NM_001256569) promoter-TSS (NM_001256569) -83 NM_001256569 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 29732 chr9 104968228 104968365 + 0 NA Intergenic CpG -40050 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 10886 chr16 2268351 2268505 + 0 NA promoter-TSS (NM_006711) promoter-TSS (NM_006711) -16 NM_001286626 10921 Hs.355643 NM_006711 ENSG00000205937 RNPS1 E5.1 RNA binding protein with serine rich domain 1 protein-coding 27166 chr7 143408865 143409039 + 0 NA promoter-TSS (NM_005232) promoter-TSS (NM_005232) -60 NM_005232 2041 Hs.89839 NM_005232 ENSG00000146904 EPHA1 EPH|EPHT|EPHT1 EPH receptor A1 protein-coding 3952 chr10 77926718 77926822 + 0 NA promoter-TSS (NR_024585) promoter-TSS (NR_024585) -42 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 9330 chr14 72608432 72608511 + 0 NA Intergenic Intergenic 91651 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 2375 chr1 201469093 201469269 + 0 NA promoter-TSS (NM_012396) promoter-TSS (NM_012396) -10 NM_012396 23612 Hs.153944 NM_012396 ENSG00000174307 PHLDA3 TIH1 pleckstrin homology like domain family A member 3 protein-coding 17974 chr20 37990771 37990790 + 0 NA intron (NM_014657, intron 8 of 8) intron (NM_014657, intron 8 of 8) 42688 NM_014657 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 12128 chr17 15699535 15699677 + 0 NA promoter-TSS (NM_001288645) promoter-TSS (NM_001288645) 29 NM_001288643 57335 Hs.585799 NM_020652 ENSG00000187607 ZNF286A ZNF286 zinc finger protein 286A protein-coding 15634 chr2 61888603 61888720 + 0 NA promoter-TSS (NM_001256721) promoter-TSS (NM_001256721) 10 NM_006430 10575 Hs.421509 NM_006430 ENSG00000115484 CCT4 CCT-DELTA|Cctd|SRB chaperonin containing TCP1 subunit 4 protein-coding 3321 chr10 14648334 14648438 + 0 NA intron (NM_001282695, intron 2 of 5) UCON25|Unknown|Unknown -43968 NM_001282696 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 9169 chr14 62692321 62692456 + 0 NA Intergenic Intergenic 352850 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 9415 chr14 76947245 76947362 + 0 NA Intergenic Intergenic -12335 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 25303 chr6 148747644 148747710 + 0 NA exon (NM_005715, exon 1 of 8) exon (NM_005715, exon 1 of 8) 542 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 8831 chr14 34052096 34052203 + 0 NA Intergenic Intergenic -101071 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 20470 chr3 155871601 155871705 + 0 NA intron (NM_003875, intron 1 of 15) CpG 1117 NM_003875 8833 Hs.591314 NM_003875 ENSG00000163655 GMPS - guanine monophosphate synthase protein-coding 23296 chr5 138033039 138033143 + 0 NA promoter-TSS (NM_016603) promoter-TSS (NM_016603) 22 NM_016603 51306 Hs.567453 NM_016603 ENSG00000031003 FAM13B ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 family with sequence similarity 13 member B protein-coding 22825 chr5 84130225 84130329 + 0 NA intron (NM_005711, intron 5 of 10) L2c|LINE|L2 254590 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 18949 chr22 41285560 41285643 + 0 NA 5' UTR (NM_001278651, exon 1 of 17) 5' UTR (NM_001278651, exon 1 of 17) 416 NM_001278651 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 11250 chr16 30942071 30942170 + 0 NA exon (NM_001282351, exon 8 of 11) exon (NM_001282351, exon 8 of 11) -6964 NM_152288 93129 Hs.745104 NM_152288 ENSG00000175938 ORAI3 TMEM142C ORAI calcium release-activated calcium modulator 3 protein-coding 7960 chr13 21703971 21704075 + 0 NA 3' UTR (NM_002010, exon 3 of 3) 3' UTR (NM_002010, exon 3 of 3) 32947 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 12931 chr17 71633547 71633549 + 0 NA Intergenic Intergenic 392431 NR_110876 102723505 Hs.547482 NR_110876 ENSG00000228639 LINC02095 - long intergenic non-protein coding RNA 2095 ncRNA 4371 chr10 112811810 112811893 + 0 NA intron (NM_001318205, intron 7 of 7) intron (NM_001318205, intron 7 of 7) -11645 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 2175 chr1 181255625 181255729 + 0 NA Intergenic LTR33|LTR|ERVL 19289 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 26848 chr7 114819828 114819932 + 0 NA Intergenic Intergenic -102274 NM_001166346 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC MyoD family inhibitor domain containing protein-coding 19262 chr3 24343570 24343674 + 0 NA intron (NM_001128176, intron 1 of 10) MER117|DNA|hAT-Charlie -150465 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 20837 chr3 185282889 185283030 + 0 NA promoter-TSS (NR_038322) promoter-TSS (NR_038322) 18 NR_038322 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 21975 chr4 164754046 164754075 + 0 NA promoter-TSS (NR_038834) promoter-TSS (NR_038834) -71 NR_038834 100505989 Hs.328236 NR_038834 ENSG00000248771 LINC01207 - long intergenic non-protein coding RNA 1207 ncRNA 18573 chr21 43262589 43262607 + 0 NA Intergenic Intergenic 69441 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 29522 chr9 91060752 91060856 + 0 NA Intergenic Intergenic 14328 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 24749 chr6 57316629 57316767 + 0 NA promoter-TSS (NM_000947) promoter-TSS (NM_000947) -919 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 primase (DNA) subunit 2 protein-coding 18842 chr22 36331553 36331722 + 0 NA intron (NM_002473, intron 3 of 40) intron (NM_002473, intron 3 of 40) -44730 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 4905 chr11 15650168 15650190 + 0 NA intron (NM_001293172, intron 1 of 2) CpG 6294 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 14367 chr19 35248613 35248675 + 0 NA promoter-TSS (NM_001260489) promoter-TSS (NM_001260489) -12 NM_205835 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 31117 chrX 141220710 141220814 + 0 NA Intergenic L1MEd|LINE|L1 21788 NM_022661 64663 Hs.375036 NM_022661 ENSG00000198573 SPANXC C|CT11.3|CTp11|SPANX-C SPANX family member C protein-coding 19307 chr3 31981257 31981388 + 0 NA promoter-TSS (NM_001137674) promoter-TSS (NM_001137674) -452 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 10819 chr15 101007020 101007124 + 0 NA intron (NM_024652, intron 6 of 33) intron (NM_024652, intron 6 of 33) -87789 NR_135828 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 5332 chr11 61061616 61061794 + 0 NA Intergenic Intergenic -32258 NM_001346456 921 Hs.58685 NM_014207 ENSG00000110448 CD5 LEU1|T1 CD5 molecule protein-coding 30964 chrX 109733275 109733425 + 0 NA promoter-TSS (NM_004458) promoter-TSS (NM_004458) 42 NM_022977 2182 Hs.268785 NM_004458 ENSG00000068366 ACSL4 ACS4|FACL4|LACS4|MRX63|MRX68 acyl-CoA synthetase long-chain family member 4 protein-coding 28510 chr8 119179549 119179712 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -28741 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding 28663 chr8 129535907 129536043 + 0 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 39043 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 23885 chr6 2765249 2765414 + 0 NA promoter-TSS (NM_020135) promoter-TSS (NM_020135) -101 NM_020135 56897 Hs.236828 NM_020135 ENSG00000124535 WRNIP1 WHIP|bA420G6.2 Werner helicase interacting protein 1 protein-coding 15889 chr2 84946492 84946608 + 0 NA Intergenic L2b|LINE|L2 -24558 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 26603 chr7 93160671 93160707 + 0 NA Intergenic HERV16-int|LTR|ERVL -12301 NM_001303496 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 10331 chr15 67125776 67125871 + 0 NA 5' UTR (NM_001145102, exon 1 of 9) 5' UTR (NM_001145102, exon 1 of 9) 107 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 28158 chr8 88940033 88940182 + 0 NA Intergenic Intergenic -612619 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 18393 chr20 62926533 62926657 + 0 NA promoter-TSS (NM_001193369) promoter-TSS (NM_001193369) -44 NM_001193370 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 538 chr1 31964181 31964318 + 0 NA Intergenic Intergenic -25862 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 15023 chr2 11868131 11868181 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -31170 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 8664 chr14 20455054 20455207 + 0 NA promoter-TSS (NM_017807) promoter-TSS (NM_017807) -1 NM_080649 328 Hs.73722 NM_001641 ENSG00000100823 APEX1 APE|APE1|APEN|APEX|APX|HAP1|REF1 apurinic/apyrimidinic endodeoxyribonuclease 1 protein-coding 23276 chr5 136028809 136028913 + 0 NA promoter-TSS (NM_000358) promoter-TSS (NM_000358) -34 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 521 chr1 31390082 31390223 + 0 NA Intergenic Intergenic -16864 NM_001320996 2170 Hs.576372 NM_004102 ENSG00000121769 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3 protein-coding 9976 chr15 42721243 42721378 + 0 NA TTS (NM_020759) TTS (NM_020759) 15909 NM_138477 146059 Hs.599232 NM_138477 ENSG00000140326 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 15462 chr2 45009456 45009525 + 0 NA promoter-TSS (NM_016932) promoter-TSS (NM_016932) -87 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 18915 chr22 39235525 39235669 + 0 NA intron (NM_002608, intron 2 of 6) intron (NM_002608, intron 2 of 6) 5312 NM_033016 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 20484 chr3 156751630 156751728 + 0 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 60342 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 986 chr1 61481327 61481441 + 0 NA Intergenic Intergenic -172858 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 23054 chr5 115415313 115415379 + 0 NA Intergenic Intergenic -118585 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 29133 chr9 69120716 69120851 + 0 NA promoter-TSS (NM_001170414) promoter-TSS (NM_001170414) -481 NM_001170414 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 18067 chr20 44496242 44496249 + 0 NA TTS (NM_198941) TTS (NM_198941) 20359 NM_024331 79183 Hs.283869 NM_024331 ENSG00000124120 TTPAL C20orf121 alpha tocopherol transfer protein like protein-coding 16104 chr2 108989184 108989313 + 0 NA 5' UTR (NM_022336, exon 1 of 12) 5' UTR (NM_022336, exon 1 of 12) 124 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 26939 chr7 123819088 123819192 + 0 NA intron (NR_002731, intron 1 of 1) L1MA8|LINE|L1 5001 NR_002731 26062 Hs.381305 NR_002731 HYALP1 HYAL6 hyaluronoglucosaminidase pseudogene 1 pseudo 23656 chr5 163460406 163460588 + 0 NA promoter-TSS (NM_001142556) promoter-TSS (NM_001142556) -14 NM_012485 3161 Hs.740467 NM_012484 ENSG00000072571 HMMR CD168|IHABP|RHAMM hyaluronan mediated motility receptor protein-coding 20624 chr3 170222094 170222110 + 0 NA promoter-TSS (NM_002740) promoter-TSS (NM_002740) -330 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 4082 chr10 92972287 92972355 + 0 NA intron (NM_001319200, intron 13 of 17) MER41E|LTR|ERV1 -88943 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 31055 chrX 130125273 130125418 + 0 NA Intergenic Intergenic 12695 NM_001130846 9131 Hs.424932 NM_004208 ENSG00000156709 AIFM1 AIF|CMT2D|CMTX4|COWCK|COXPD6|DFNX5|NADMR|NAMSD|PDCD8 apoptosis inducing factor, mitochondria associated 1 protein-coding 14895 chr2 264005 264128 + 0 NA promoter-TSS (NM_004300) promoter-TSS (NM_004300) 31 NM_015677 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 26216 chr7 46969378 46969549 + 0 NA Intergenic Intergenic -272341 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 20747 chr3 179992069 179992173 + 0 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) -17901 NM_001256754 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 14717 chr19 50369332 50369398 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -3535 NM_004851 9476 Hs.512843 NM_004851 ENSG00000131400 NAPSA KAP|Kdap|NAP1|NAPA|SNAPA napsin A aspartic peptidase protein-coding 24295 chr6 28988644 28988799 + 0 NA TTS (NR_135289) TTS (NR_135289) 3972 NR_135289 414766 Hs.571153 NR_135289 HCG16 HCG15 HLA complex group 16 (non-protein coding) ncRNA 7451 chr12 94560988 94561092 + 0 NA promoter-TSS (NR_049885) promoter-TSS (NR_049885) -749 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 13303 chr18 22286754 22286865 + 0 NA Intergenic Intergenic 117372 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 1353 chr1 94927039 94927207 + 0 NA promoter-TSS (NR_033998) promoter-TSS (NR_033998) 100 NM_001839 1266 Hs.483454 NM_001839 ENSG00000117519 CNN3 - calponin 3 protein-coding 1742 chr1 152392944 152393097 + 0 NA Intergenic Intergenic 21254 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 12051 chr17 7688232 7688383 + 0 NA promoter-TSS (NM_000546) promoter-TSS (NM_000546) -42 NM_018081 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 11610 chr16 72987602 72987640 + 0 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 60754 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 10025 chr15 45450082 45450186 + 0 NA Intergenic Intergenic 17084 NR_030599 100126311 NR_030599 ENSG00000166920 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 2585 chr1 210232640 210232780 + 0 NA promoter-TSS (NM_019605) promoter-TSS (NM_019605) -140 NM_019605 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 4404 chr10 114544435 114544539 + 0 NA intron (NM_001003407, intron 6 of 21) intron (NM_001003407, intron 6 of 21) -17561 NM_001322891 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 14773 chr19 54102696 54102848 + 0 NA promoter-TSS (NM_001282349) promoter-TSS (NM_001282349) -80 NM_004542 4696 Hs.198269 NM_004542 ENSG00000170906 NDUFA3 B9|CI-B9 NADH:ubiquinone oxidoreductase subunit A3 protein-coding 18105 chr20 45905754 45905858 + 0 NA intron (NM_182676, intron 7 of 14) MIRb|SINE|MIR 5188 NM_001242921 5360 Hs.439312 NM_006227 ENSG00000100979 PLTP BPIFE|HDLCQ9 phospholipid transfer protein protein-coding 4864 chr11 13168462 13168611 + 0 NA Intergenic Intergenic -109191 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 6562 chr12 8032806 8032834 + 0 NA promoter-TSS (NM_018416) promoter-TSS (NM_018416) 57 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 16985 chr2 207239323 207239407 + 0 NA intron (NR_110283, intron 2 of 3) intron (NR_110283, intron 2 of 3) 14951 NR_110283 101927865 Hs.574609 NR_110283 LOC101927865 - uncharacterized LOC101927865 ncRNA 7716 chr12 117969389 117969493 + 0 NA Intergenic CpG -1218 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 11086 chr16 19396688 19396713 + 0 NA Intergenic HERVK14C-int|LTR|ERVK -13839 NM_001308161 79838 Hs.115838 NM_024780 ENSG00000103534 TMC5 - transmembrane channel like 5 protein-coding 30579 chrX 24465149 24465298 + 0 NA promoter-TSS (NM_005391) promoter-TSS (NM_005391) -4 NM_001142386 5165 Hs.296031 NM_005391 ENSG00000067992 PDK3 CMTX6|GS1-358P8.4 pyruvate dehydrogenase kinase 3 protein-coding 21648 chr4 103137603 103137675 + 0 NA intron (NM_001286734, intron 37 of 46) intron (NM_001286734, intron 37 of 46) -37772 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 12047 chr17 7572629 7572719 + 0 NA promoter-TSS (NM_001416) promoter-TSS (NM_001416) -32 NM_001416 1973 Hs.129673 NM_001416 ENSG00000161960 EIF4A1 DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I eukaryotic translation initiation factor 4A1 protein-coding 97 chr1 7117895 7117976 + 0 NA intron (NM_015215, intron 4 of 22) intron (NM_015215, intron 4 of 22) 332611 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 18472 chr21 31732079 31732213 + 0 NA promoter-TSS (NM_001145444) promoter-TSS (NM_001145444) -28 NM_001145444 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 10293 chr15 65185461 65185576 + 0 NA promoter-TSS (NM_006660) promoter-TSS (NM_006660) -98 NR_133680 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX - caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 3645 chr10 46284601 46284814 + 0 NA Intergenic CpG -2290 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000274209 ANTXRL - anthrax toxin receptor-like protein-coding 7776 chr12 121626232 121626336 + 0 NA promoter-TSS (NM_032790) promoter-TSS (NM_032790) -266 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 20809 chr3 184134553 184134628 + 0 NA promoter-TSS (NM_003907) promoter-TSS (NM_003907) -432 NM_003907 8893 Hs.283551 NM_003907 ENSG00000145191 EIF2B5 CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM eukaryotic translation initiation factor 2B subunit epsilon protein-coding 26464 chr7 77416386 77416591 + 0 NA promoter-TSS (NM_017439) promoter-TSS (NM_017439) -88 NM_017439 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 8260 chr13 49444195 49444299 + 0 NA promoter-TSS (NM_001320699) promoter-TSS (NM_001320699) -46 NM_001320727 107303344 NM_001320727 SETDB2-PHF11 - SETDB2-PHF11 readthrough protein-coding 12403 chr17 37450177 37450273 + 0 NA intron (NM_001166105, intron 8 of 15) intron (NM_001166105, intron 8 of 15) -39620 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 9474 chr14 81393780 81393925 + 0 NA intron (NM_001256430, intron 4 of 7) intron (NM_001256430, intron 4 of 7) 33360 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 774 chr1 43969853 43970002 + 0 NA promoter-TSS (NM_001319169) promoter-TSS (NM_001319169) -54 NM_001319165 1802 Hs.632398 NM_001384 ENSG00000132768 DPH2 DPH2L2 DPH2 homolog protein-coding 5101 chr11 32829727 32829859 + 0 NA promoter-TSS (NM_024081) promoter-TSS (NM_024081) -142 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 5602 chr11 70017092 70017196 + 0 NA Intergenic Intergenic 46780 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LOC101928443 - uncharacterized LOC101928443 ncRNA 17319 chr2 235026338 235026442 + 0 NA intron (NM_014521, intron 2 of 5) intron (NM_014521, intron 2 of 5) 74406 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 31004 chrX 119410507 119410611 + 0 NA intron (NM_145305, intron 3 of 4) intron (NM_145305, intron 3 of 4) 11264 NM_145305 203427 Hs.496658 NM_145305 ENSG00000077713 SLC25A43 - solute carrier family 25 member 43 protein-coding 6224 chr11 121476518 121476559 + 0 NA intron (NM_003105, intron 2 of 47) intron (NM_003105, intron 2 of 47) 24335 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 21895 chr4 150215756 150215860 + 0 NA intron (NR_036614, intron 5 of 16) MER21A|LTR|ERVL 137534 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 16265 chr2 126972129 126972233 + 0 NA Intergenic CpG 73295 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 LOC101929926 - uncharacterized LOC101929926 protein-coding 15625 chr2 61471133 61471210 + 0 NA promoter-TSS (NM_014709) promoter-TSS (NM_014709) -457 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 23709 chr5 171534049 171534153 + 0 NA Intergenic Intergenic 114438 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 4123 chr10 95552736 95552840 + 0 NA intron (NM_015385, intron 1 of 24) HAL1|LINE|L1 8632 NM_015385 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 5098 chr11 32386119 32386223 + 0 NA Intergenic Intergenic 44646 NM_001198552 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 30815 chrX 71254162 71254242 + 0 NA promoter-TSS (NM_201599) promoter-TSS (NM_201599) -14 NM_201599 9203 Hs.522684 NM_005096 ENSG00000147130 ZMYM3 DXS6673E|MYM|XFIM|ZNF198L2|ZNF261 zinc finger MYM-type containing 3 protein-coding 22297 chr5 17379744 17379817 + 0 NA non-coding (NR_033975, exon 3 of 3) non-coding (NR_033975, exon 3 of 3) 7530 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 16307 chr2 129056381 129056535 + 0 NA Intergenic Intergenic 191858 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 6929 chr12 46383877 46384034 + 0 NA promoter-TSS (NR_125381) promoter-TSS (NR_125381) -152 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 19437 chr3 45092446 45092550 + 0 NA intron (NM_022842, intron 6 of 8) L3b|LINE|CR1 53924 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 20735 chr3 179148644 179148745 + 0 NA promoter-TSS (NR_125401) promoter-TSS (NR_125401) 171 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 14044 chr19 9032165 9032240 + 0 NA Intergenic L2b|LINE|L2 -50860 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 3424 chr10 23438755 23438859 + 0 NA promoter-TSS (NM_001145373) promoter-TSS (NM_001145373) -462 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 18158 chr20 49381670 49381802 + 0 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 100908 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 13843 chr19 893105 893255 + 0 NA promoter-TSS (NM_005481) promoter-TSS (NM_005481) 38 NM_005481 10025 Hs.365207 NM_005481 ENSG00000175221 MED16 DRIP92|THRAP5|TRAP95 mediator complex subunit 16 protein-coding 29347 chr9 79764591 79764695 + 0 NA Intergenic Intergenic -59887 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 15791 chr2 72272073 72272207 + 0 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -124278 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 10792 chr15 99059192 99059296 + 0 NA Intergenic CpG 44540 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 31009 chrX 119574465 119574610 + 0 NA promoter-TSS (NM_001282161) promoter-TSS (NM_001282161) 70 NM_003336 7319 Hs.379466 NM_003336 ENSG00000077721 UBE2A HHR6A|MRXS30|MRXSN|RAD6A|UBC2 ubiquitin conjugating enzyme E2 A protein-coding 8969 chr14 50061254 50061358 + 0 NA intron (NR_131171, intron 2 of 8) intron (NR_131171, intron 2 of 8) 43737 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 893 chr1 54016382 54016532 + 0 NA intron (NM_001010978, intron 2 of 5) intron (NM_001010978, intron 2 of 5) 1729 NM_001276395 388633 Hs.439583 NM_001010978 ENSG00000203985 LDLRAD1 - low density lipoprotein receptor class A domain containing 1 protein-coding 19684 chr3 84958900 84959004 + 0 NA promoter-TSS (NM_001167674) promoter-TSS (NM_001167674) -30 NM_001167675 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 8766 chr14 24431821 24431925 + 0 NA exon (NM_001290256, exon 3 of 8) exon (NM_001290256, exon 3 of 8) 1938 NM_001290257 23351 Hs.713590 NM_015299 ENSG00000100441 KHNYN KIAA0323 KH and NYN domain containing protein-coding 6714 chr12 19382167 19382271 + 0 NA Intergenic Intergenic -57455 NM_001114176 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 10459 chr15 75036462 75036541 + 0 NA intron (NM_001301103, intron 2 of 3) intron (NM_001301103, intron 2 of 3) -6768 NM_001301104 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 3959 chr10 78256333 78256437 + 0 NA Intergenic Intergenic 7760 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 23396 chr5 142251487 142251591 + 0 NA Intergenic Intergenic 66783 NR_131221 100642175 Hs.684549 NR_131221 ENSG00000281881 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 27510 chr8 22383610 22383738 + 0 NA intron (NM_001135153, intron 1 of 8) intron (NM_001135153, intron 1 of 8) 16137 NM_001135153 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 19224 chr3 16995243 16995272 + 0 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 62061 NR_037465 100500913 NR_037465 ENSG00000154822 MIR3714 - microRNA 3714 ncRNA 29490 chr9 88747890 88747994 + 0 NA Intergenic Intergenic -2037 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 20084 chr3 126655053 126655157 + 0 NA promoter-TSS (NM_001173513) promoter-TSS (NM_001173513) 19 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TRXR3 thioredoxin reductase 3 protein-coding 6047 chr11 110196346 110196450 + 0 NA intron (NM_001260492, intron 15 of 15) intron (NM_001260492, intron 15 of 15) 100314 NM_001260495 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 17134 chr2 220199047 220199151 + 0 NA Intergenic Intergenic -292534 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 30747 chrX 54044579 54044676 + 0 NA promoter-TSS (NM_001184897) promoter-TSS (NM_001184897) -453 NM_001184897 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 27995 chr8 70246703 70246785 + 0 NA intron (NM_001321703, intron 2 of 22) L1MB2|LINE|L1 156511 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 22914 chr5 95961362 95961474 + 0 NA promoter-TSS (NR_130776) promoter-TSS (NR_130776) -583 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 20235 chr3 138082523 138082627 + 0 NA intron (NM_001170538, intron 9 of 13) MLT1O|LTR|ERVL-MaLR 30905 NM_001170538 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2 DAZ interacting zinc finger protein 1 like protein-coding 24581 chr6 43088818 43088985 + 0 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) 12087 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 5210 chr11 44681193 44681200 + 0 NA Intergenic Intergenic -83230 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 25519 chr7 512020 512182 + 0 NA intron (NM_002607, intron 3 of 6) intron (NM_002607, intron 3 of 6) 7743 NM_002607 5154 Hs.535898 NM_002607 ENSG00000197461 PDGFA PDGF-A|PDGF1 platelet derived growth factor subunit A protein-coding 22052 chr4 177484744 177484826 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR -42282 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 755 chr1 43285582 43285701 + 0 NA promoter-TSS (NM_182517) promoter-TSS (NM_182517) -24 NM_001164829 149466 Hs.158963 NM_182517 ENSG00000253313 C1orf210 TEMP chromosome 1 open reading frame 210 protein-coding 30208 chr9 128912471 128912507 + 0 NA intron (NM_001127244, intron 3 of 3) intron (NM_001127244, intron 3 of 3) -8406 NM_174933 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 23758 chr5 174910346 174910486 + 0 NA Intergenic Intergenic 85315 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 28426 chr8 109620743 109620895 + 0 NA intron (NM_001099746, intron 1 of 5) intron (NM_001099746, intron 1 of 5) -12757 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 12546 chr17 43546136 43546141 + 0 NA promoter-TSS (NM_001261438) promoter-TSS (NM_001261438) -201 NM_001261438 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 30038 chr9 121278559 121278663 + 0 NA intron (NM_001127662, intron 1 of 16) intron (NM_001127662, intron 1 of 16) 6919 NR_103560 57000 Hs.522373 NM_020250 ENSG00000235865 GSN-AS1 C9orf31|MOST2 GSN antisense RNA 1 ncRNA 22910 chr5 95730992 95731096 + 0 NA promoter-TSS (NM_014899) promoter-TSS (NM_014899) -102 NM_014899 22836 Hs.445030 NM_014899 ENSG00000164292 RHOBTB3 - Rho related BTB domain containing 3 protein-coding 24840 chr6 80638850 80638954 + 0 NA Intergenic Intergenic 532292 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 25507 chr6 170553223 170553395 + 0 NA promoter-TSS (NM_002793) promoter-TSS (NM_002793) 20 NM_002793 5689 Hs.352768 NM_002793 ENSG00000008018 PSMB1 HC5|PMSB1|PSC5 proteasome subunit beta 1 protein-coding 15880 chr2 84459225 84459377 + 0 NA 5' UTR (NM_003849, exon 1 of 9) 5' UTR (NM_003849, exon 1 of 9) 161 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 15340 chr2 36330583 36330682 + 0 NA Intergenic Intergenic 24938 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 26078 chr7 38318899 38319003 + 0 NA Intergenic L2c|LINE|L2 -22626 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 22497 chr5 51383282 51383414 + 0 NA promoter-TSS (NR_046243) promoter-TSS (NR_046243) -16 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 26138 chr7 42774579 42774683 + 0 NA Intergenic L2c|LINE|L2 -68184 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 13901 chr19 2540862 2541030 + 0 NA intron (NM_052847, intron 3 of 4) CpG 64821 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 21643 chr4 102760936 102761040 + 0 NA promoter-TSS (NM_005908) promoter-TSS (NM_005908) 6 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 9426 chr14 77098065 77098190 + 0 NA promoter-TSS (NM_033426) promoter-TSS (NM_033426) -108 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 24854 chr6 82458254 82458358 + 0 NA Intergenic L1PA16|LINE|L1 94062 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 23986 chr6 8064459 8064619 + 0 NA promoter-TSS (NM_001199322) promoter-TSS (NM_001199322) -125 NM_001199323 63915 Hs.719272 NM_201280 ENSG00000188428 BLOC1S5 BLOS5|MU|MUTED biogenesis of lysosomal organelles complex 1 subunit 5 protein-coding 12781 chr17 58741193 58741297 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -14624 NM_014906 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 5746 chr11 82900436 82900565 + 0 NA 5' UTR (NM_199418, exon 1 of 10) 5' UTR (NM_199418, exon 1 of 10) 103 NM_199418 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 12831 chr17 63550183 63550333 + 0 NA promoter-TSS (NM_005828) promoter-TSS (NM_005828) -177 NM_005828 10238 Hs.410596 NM_005828 ENSG00000136485 DCAF7 AN11|HAN11|SWAN-1|WDR68 DDB1 and CUL4 associated factor 7 protein-coding 8740 chr14 23631926 23632066 + 0 NA intron (NM_001318835, intron 1 of 4) intron (NM_001318835, intron 1 of 4) 1881 NM_001318835 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 411 chr1 26233951 26234081 + 0 NA promoter-TSS (NM_001281517) promoter-TSS (NM_001281517) -137 NM_022778 64793 Hs.63795 NM_022778 ENSG00000130695 CEP85 CCDC21 centrosomal protein 85 protein-coding 18371 chr20 61387746 61387850 + 0 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -111623 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 6583 chr12 9648048 9648237 + 0 NA promoter-TSS (NR_002814) promoter-TSS (NR_002814) 95 NR_046446 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 30420 chrUn_KI270336v1 792 896 + 0 NA NA SAR|Satellite|Satellite NA NA 10489 chr15 77161222 77161363 + 0 NA intron (NM_024776, intron 5 of 7) intron (NM_024776, intron 5 of 7) 64112 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 6370 chr11 130772673 130772776 + 0 NA Intergenic Intergenic 89386 NR_125383 100507431 Hs.375101 NR_125383 LOC100507431 - uncharacterized LOC100507431 ncRNA 16557 chr2 161308339 161308501 + 0 NA 5' UTR (NM_005805, exon 1 of 12) 5' UTR (NM_005805, exon 1 of 12) 145 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 10154 chr15 56365294 56365462 + 0 NA promoter-TSS (NM_001286449) promoter-TSS (NM_001286449) -46 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 22208 chr5 10353546 10353650 + 0 NA promoter-TSS (NM_001270660) promoter-TSS (NM_001270660) -41 NM_001270661 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 942 chr1 58620372 58620476 + 0 NA Intergenic MIRb|SINE|MIR -42930 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 1376 chr1 97921075 97921181 + 0 NA promoter-TSS (NM_001160301) promoter-TSS (NM_001160301) -69 NM_000110 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 19619 chr3 63725891 63725995 + 0 NA Intergenic Intergenic 73275 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 17196 chr2 225889538 225889642 + 0 NA Intergenic Intergenic -253204 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 25898 chr7 25922462 25922566 + 0 NA Intergenic MER117|DNA|hAT-Charlie 27472 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 11857 chr16 89816561 89816753 + 0 NA promoter-TSS (NM_000135) promoter-TSS (NM_000135) 0 NM_001018112 2175 Hs.744083 NM_000135 ENSG00000187741 FANCA FA|FA-H|FA1|FAA|FACA|FAH|FANCH Fanconi anemia complementation group A protein-coding 29978 chr9 116175729 116175833 + 0 NA intron (NM_002581, intron 1 of 21) L2a|LINE|L2 21989 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 22982 chr5 107469652 107469756 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 201191 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 6634 chr12 12890809 12890963 + 0 NA promoter-TSS (NM_003979) promoter-TSS (NM_003979) -136 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 6270 chr11 124832668 124832772 + 0 NA intron (NR_103862, intron 4 of 4) MER21B|LTR|ERVL 32292 NR_103862 100507283 Hs.564177 NR_103862 ENSG00000245498 LOC100507283 - uncharacterized LOC100507283 ncRNA 2369 chr1 201353405 201353509 + 0 NA Intergenic Intergenic 24243 NM_001276346 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 28323 chr8 101063850 101063982 + 0 NA intron (NR_033962, intron 2 of 2) intron (NR_033962, intron 2 of 2) 11862 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 17604 chr20 11179077 11179264 + 0 NA Intergenic Intergenic 94213 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 26801 chr7 107743612 107743773 + 0 NA promoter-TSS (NM_001284291) promoter-TSS (NM_001284291) -5 NM_001284291 79872 Hs.592271 NM_024814 ENSG00000105879 CBLL1 HAKAI|RNF188 Cbl proto-oncogene like 1 protein-coding 7482 chr12 97614343 97614447 + 0 NA Intergenic Intergenic 50583 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 10746 chr15 93829505 93829633 + 0 NA Intergenic LTR33|LTR|ERVL -26991 NR_120321 101927153 Hs.371900 NR_120321 LOC101927153 - uncharacterized LOC101927153 ncRNA 13810 chr18 77127944 77128048 + 0 NA intron (NM_001025100, intron 1 of 3) L1MD2|LINE|L1 4822 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 2816 chr1 224513804 224513908 + 0 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 78961 NM_001322303 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 9549 chr14 90658721 90658825 + 0 NA intron (NM_001320421, intron 9 of 20) intron (NM_001320421, intron 9 of 20) 16144 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 14700 chr19 49676789 49676902 + 0 NA promoter-TSS (NM_198318) promoter-TSS (NM_198318) -307 NM_001207042 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 10393 chr15 71252196 71252302 + 0 NA intron (NM_024817, intron 4 of 16) UCON43|Unknown|Unknown -63190 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 231 chr1 16367031 16367165 + 0 NA promoter-TSS (NM_001114600) promoter-TSS (NM_001114600) 68 NR_073500 26099 Hs.252967 NM_001114600 ENSG00000055070 SZRD1 C1orf144 SUZ RNA binding domain containing 1 protein-coding 14572 chr19 45632505 45632664 + 0 NA intron (NM_001193268, intron 9 of 21) Charlie10|DNA|hAT-Charlie 6503 NR_029886 442902 NR_029886 ENSG00000125746 MIR330 MIRN330|hsa-mir-330|mir-330 microRNA 330 ncRNA 14067 chr19 10251798 10251941 + 0 NA promoter-TSS (NM_015956) promoter-TSS (NM_015956) -95 NM_146388 51073 Hs.279652 NM_015956 ENSG00000105364 MRPL4 CGI-28|L4mt mitochondrial ribosomal protein L4 protein-coding 17787 chr20 23622872 23622991 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR 15117 NM_000099 1471 Hs.304682 NM_000099 ENSG00000101439 CST3 ARMD11|HEL-S-2 cystatin C protein-coding 17053 chr2 213279276 213279399 + 0 NA intron (NM_001242575, intron 1 of 2) L1MC3|LINE|L1 4872 NR_144752 100130451 Hs.608433 NM_001242575 LOC100130451 - uncharacterized LOC100130451 protein-coding 9995 chr15 43775440 43775523 + 0 NA intron (NM_025165, intron 5 of 10) intron (NM_025165, intron 5 of 10) -1615 NM_001199877 10169 Hs.424126 NM_005770 ENSG00000140264 SERF2 4F5REL|FAM2C|H4F5REL|HsT17089 small EDRK-rich factor 2 protein-coding 551 chr1 32351490 32351610 + 0 NA Intergenic CpG 10693 NM_001167676 100128071 Hs.512763 NM_001167676 ENSG00000225828 FAM229A - family with sequence similarity 229 member A protein-coding 4700 chr11 2912623 2912734 + 0 NA intron (NM_002555, intron 5 of 10).2 intron (NM_002555, intron 5 of 10).2 -8733 NM_007105 5003 Hs.300076 NM_007105 ENSG00000254827 SLC22A18AS BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B solute carrier family 22 member 18 antisense protein-coding 17248 chr2 230411880 230411995 + 0 NA Intergenic Intergenic -4219 NM_003113 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 4720 chr11 4187615 4187719 + 0 NA intron (NR_047550, intron 1 of 1) CpG 515 NR_047550 100506082 Hs.445705 NR_047550 ENSG00000254480 LOC100506082 - uncharacterized LOC100506082 ncRNA 9361 chr14 73851833 73851952 + 0 NA promoter-TSS (NM_001146154) promoter-TSS (NM_001146154) -26 NM_152444 145482 Hs.632344 NM_152444 ENSG00000140043 PTGR2 HEL-S-298|PGR2|ZADH1 prostaglandin reductase 2 protein-coding 28320 chr8 101009780 101009895 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -42217 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 12570 chr17 45047269 45047402 + 0 NA intron (NM_001288654, intron 1 of 4) AluJb|SINE|Alu 4182 NM_001288655 79877 Hs.463148 NM_024819 ENSG00000172992 DCAKD - dephospho-CoA kinase domain containing protein-coding 10206 chr15 59554158 59554302 + 0 NA Intergenic Intergenic -57553 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 6647 chr12 13179833 13179946 + 0 NA Intergenic Intergenic -16779 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 18852 chr22 36465339 36465366 + 0 NA Intergenic Intergenic 16288 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 8813 chr14 32398321 32398425 + 0 NA intron (NM_004274, intron 1 of 13) intron (NM_004274, intron 1 of 13) 69100 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 24227 chr6 26216680 26216812 + 0 NA promoter-TSS (NM_003518) promoter-TSS (NM_003518) -102 NM_003518 8339 Hs.591809 NM_003518 ENSG00000273802 HIST1H2BG H2B.1A|H2B/a|H2BFA|dJ221C16.8 histone cluster 1 H2B family member g protein-coding 29705 chr9 100575881 100575985 + 0 NA intron (NM_001198812, intron 9 of 9) intron (NM_001198812, intron 9 of 9) -2146 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 MURC CAVIN4|cavin-4 muscle related coiled-coil protein protein-coding 25198 chr6 136793098 136793252 + 0 NA promoter-TSS (NM_005923) promoter-TSS (NM_005923) -657 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 4583 chr10 126013666 126013770 + 0 NA 3' UTR (NM_003474, exon 23 of 23) 3' UTR (NM_003474, exon 23 of 23) -40445 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 20658 chr3 172130032 172130163 + 0 NA intron (NM_001135095, intron 2 of 25) intron (NM_001135095, intron 2 of 25) 89543 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 19005 chr22 45537908 45538033 + 0 NA intron (NM_006486, intron 8 of 16) intron (NM_006486, intron 8 of 16) 35131 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 20406 chr3 151228348 151228452 + 0 NA intron (NM_014879, intron 1 of 2) intron (NM_014879, intron 1 of 2) 20810 NM_001081455 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 27945 chr8 64605069 64605173 + 0 NA intron (NM_004820, intron 4 of 5) intron (NM_004820, intron 4 of 5) 24883 NM_152414 27319 Hs.388788 NM_152414 ENSG00000180828 BHLHE22 BHLHB5|Beta3|Beta3a|CAGL85|TNRC20 basic helix-loop-helix family member e22 protein-coding 7302 chr12 77848047 77848094 + 0 NA intron (NM_014903, intron 1 of 38) intron (NM_014903, intron 1 of 38) 16781 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 19412 chr3 42502493 42502572 + 0 NA promoter-TSS (NM_001251883) promoter-TSS (NM_001251883) -80 NM_004624 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 12592 chr17 45705532 45705668 + 0 NA intron (NM_001303016, intron 3 of 12).3 intron (NM_001303016, intron 3 of 12).3 -78680 NM_001145146 1394 Hs.417628 NM_004382 ENSG00000120088 CRHR1 CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRHR|CRHR1L corticotropin releasing hormone receptor 1 protein-coding 17966 chr20 37332174 37332259 + 0 NA Intergenic Intergenic -12469 NM_005417 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 24992 chr6 108732758 108732809 + 0 NA Intergenic Intergenic -18871 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 7578 chr12 105562510 105562614 + 0 NA Intergenic Intergenic -141641 NR_110108 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 20719 chr3 177810250 177810354 + 0 NA Intergenic Intergenic -6563 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 18243 chr20 53217261 53217331 + 0 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 32013 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 29479 chr9 88198041 88198061 + 0 NA Intergenic Intergenic -63066 NM_001166137 645961 Hs.580879 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 27017 chr7 131106399 131106422 + 0 NA intron (NR_109854, intron 2 of 5) CpG 620 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 23305 chr5 138465014 138465142 + 0 NA promoter-TSS (NM_001964) promoter-TSS (NM_001964) -414 NM_001964 1958 Hs.326035 NM_001964 ENSG00000120738 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 24166 chr6 20237851 20237955 + 0 NA Intergenic LTR51|LTR|ERV1 -25439 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 30165 chr9 128052110 128052214 + 0 NA Intergenic Intergenic 15158 NM_197956 203245 Hs.373606 NM_197956 ENSG00000171169 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 11229 chr16 30585700 30585804 + 0 NA promoter-TSS (NM_152458) promoter-TSS (NM_152458) 19 NM_152458 146540 Hs.513509 NM_152458 ENSG00000197162 ZNF785 - zinc finger protein 785 protein-coding 26340 chr7 65873085 65873229 + 0 NA promoter-TSS (NM_001284342) promoter-TSS (NM_001284342) 58 NM_001284342 154807 Hs.427232 NM_173517 ENSG00000196715 VKORC1L1 - vitamin K epoxide reductase complex subunit 1 like 1 protein-coding 15603 chr2 58620239 58620343 + 0 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 99538 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 3403 chr10 22246667 22246821 + 0 NA Intergenic L2b|LINE|L2 -5328 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 20824 chr3 184561631 184561735 + 0 NA promoter-TSS (NM_004443) promoter-TSS (NM_004443) -116 NM_004443 2049 Hs.2913 NM_004443 ENSG00000182580 EPHB3 EK2|ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 23806 chr5 178331481 178331651 + 0 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -98744 NR_103509 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 22811 chr5 82365905 82365919 + 0 NA Intergenic LTR16A1|LTR|ERVL 86450 NM_001017971 92270 Hs.729805 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 5076 chr11 30198051 30198155 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -32913 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone beta subunit protein-coding 21288 chr4 37826554 37826658 + 0 NA promoter-TSS (NM_018290) promoter-TSS (NM_018290) -54 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 11979 chr17 4909217 4909362 + 0 NA Intergenic Intergenic -6215 NM_000080 1145 Hs.654535 NM_000080 ENSG00000108556 CHRNE ACHRE|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|SCCMS cholinergic receptor nicotinic epsilon subunit protein-coding 12272 chr17 28735364 28735507 + 0 NA intron (NM_178170, intron 4 of 14) intron (NM_178170, intron 4 of 14) 6621 NM_178170 284086 Hs.448468 NM_178170 ENSG00000160602 NEK8 JCK|NEK12A|NPHP9|RHPD2 NIMA related kinase 8 protein-coding 4205 chr10 99930864 99930968 + 0 NA promoter-TSS (NM_001318326) promoter-TSS (NM_001318326) 80 NM_001318326 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 29301 chr9 77177406 77177510 + 0 NA promoter-TSS (NM_015186) promoter-TSS (NM_015186) 13 NM_033305 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 924 chr1 56376837 56376941 + 0 NA Intergenic Intergenic 202695 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 14810 chr19 55339432 55339479 + 0 NA promoter-TSS (NM_032701) promoter-TSS (NM_032701) -398 NM_032701 84787 Hs.590982 NM_032701 ENSG00000133247 KMT5C SUV420H2|Suv4-20h2 lysine methyltransferase 5C protein-coding 5010 chr11 22829681 22829866 + 0 NA promoter-TSS (NM_001320341) promoter-TSS (NM_001320341) 89 NM_001320341 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 28935 chr9 14315057 14315157 + 0 NA intron (NM_001190738, intron 1 of 8) CpG-28102 -1061 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 9878 chr15 36757664 36757682 + 0 NA intron (NM_001321759, intron 10 of 10) MER44D|DNA|TcMar-Tigger 60833 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 19754 chr3 99895933 99896037 + 0 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -19782 NM_001282793 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 13606 chr18 54269710 54269757 + 0 NA intron (NM_007195, intron 1 of 9) CpG 254 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding 29814 chr9 108869304 108869408 + 0 NA intron (NM_003640, intron 36 of 36) intron (NM_003640, intron 36 of 36) 7128 NM_006687 10881 Hs.123530 NM_006687 ENSG00000187003 ACTL7A - actin like 7A protein-coding 2301 chr1 197312315 197312442 + 0 NA intron (NM_001257965, intron 3 of 14) AluSq2|SINE|Alu 44174 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs 1, cell polarity complex component protein-coding 10446 chr15 74598359 74598478 + 0 NA TTS (NM_001307939) TTS (NM_001307939) -9954 NM_003992 1198 Hs.511790 NM_001292 ENSG00000179335 CLK3 PHCLK3|PHCLK3/152 CDC like kinase 3 protein-coding 17079 chr2 216081749 216081853 + 0 NA promoter-TSS (NM_018441) promoter-TSS (NM_018441) 15 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 8815 chr14 32473610 32473721 + 0 NA intron (NM_004274, intron 2 of 13) intron (NM_004274, intron 2 of 13) 144392 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 17157 chr2 222837813 222837861 + 0 NA Intergenic L2c|LINE|L2 -23177 NM_004457 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|PRO2194 acyl-CoA synthetase long-chain family member 3 protein-coding 24148 chr6 19298052 19298193 + 0 NA Intergenic Intergenic -117642 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 3922 chr10 75210366 75210513 + 0 NA intron (NM_001184823, intron 1 of 9) CpG 285 NM_001324087 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 8204 chr13 44745352 44745485 + 0 NA Intergenic L2a|LINE|L2 64212 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 27231 chr7 151341723 151341871 + 0 NA promoter-TSS (NM_016118) promoter-TSS (NM_016118) 36 NM_001243351 51667 Hs.647082 NM_016118 ENSG00000013374 NUB1 BS4|NUB1L|NYREN18 negative regulator of ubiquitin like proteins 1 protein-coding 25708 chr7 13830065 13830152 + 0 NA Intergenic Intergenic 156406 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 21791 chr4 128323157 128323261 + 0 NA Intergenic L2a|LINE|L2 -34380 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 16601 chr2 165833251 165833434 + 0 NA Intergenic Intergenic 38599 NR_045375 100506124 Hs.709870 NR_045375 LOC100506124 - uncharacterized LOC100506124 ncRNA 21392 chr4 56387153 56387257 + 0 NA intron (NM_001286672, intron 1 of 10) intron (NM_001286672, intron 1 of 10) 303 NM_001286671 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 2660 chr1 214123221 214123403 + 0 NA Intergenic Intergenic 134811 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 14631 chr19 47729598 47729801 + 0 NA intron (NM_014601, intron 4 of 5) intron (NM_014601, intron 4 of 5) -15837 NM_015710 29997 Hs.421907 NM_015710 ENSG00000105373 GLTSCR2 PICT-1|PICT1 glioma tumor suppressor candidate region gene 2 protein-coding 11160 chr16 25031636 25031770 + 0 NA promoter-TSS (NR_038379) promoter-TSS (NR_038379) -38 NR_038379 554206 Hs.552959 NR_038379 ENSG00000262587 LOC554206 - leucine carboxyl methyltransferase 1 pseudogene pseudo 15538 chr2 53313753 53313843 + 0 NA Intergenic AluSx|SINE|Alu -453985 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 3548 chr10 32998528 32998608 + 0 NA Intergenic AluSp|SINE|Alu -40203 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 5893 chr11 95068700 95068838 + 0 NA non-coding (NR_103726, exon 2 of 2) non-coding (NR_103726, exon 2 of 2) 1892 NR_103726 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 29001 chr9 26262115 26262219 + 0 NA Intergenic LTR26|LTR|ERV1 195492 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 3449 chr10 24820712 24820824 + 0 NA Intergenic Intergenic -97100 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 639 chr1 36464322 36464475 + 0 NA promoter-TSS (NM_031280) promoter-TSS (NM_031280) 41 NM_031280 64960 Hs.352839 NM_031280 ENSG00000116898 MRPS15 DC37|MPR-S15|RPMS15|S15mt mitochondrial ribosomal protein S15 protein-coding 28739 chr8 134685659 134685763 + 0 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 10847 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 28381 chr8 104589219 104589341 + 0 NA promoter-TSS (NM_013437) promoter-TSS (NM_013437) -256 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 ST7 LDL receptor related protein 12 protein-coding 12179 chr17 18087779 18087930 + 0 NA promoter-TSS (NM_001388) promoter-TSS (NM_001388) -13 NM_001388 1819 Hs.78582 NM_001388 ENSG00000108591 DRG2 - developmentally regulated GTP binding protein 2 protein-coding 13764 chr18 71027682 71027780 + 0 NA Intergenic MER41B|LTR|ERV1 -376874 NM_001278515 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding) protein-coding 13942 chr19 4182600 4182671 + 0 NA promoter-TSS (NM_001193285) promoter-TSS (NM_001193285) -31 NM_001321058 51548 Hs.423756 NM_016539 ENSG00000077463 SIRT6 SIR2L6 sirtuin 6 protein-coding 13888 chr19 2151690 2151830 + 0 NA promoter-TSS (NM_001261826) promoter-TSS (NM_001261826) -203 NM_001261826 8943 Hs.512815 NM_003938 ENSG00000065000 AP3D1 ADTD|HPS10|hBLVR adaptor related protein complex 3 delta 1 subunit protein-coding 4746 chr11 6389954 6390104 + 0 NA promoter-TSS (NM_000543) promoter-TSS (NM_000543) -385 NM_001007593 6609 Hs.498173 NM_000543 ENSG00000166311 SMPD1 ASM|ASMASE|NPD sphingomyelin phosphodiesterase 1 protein-coding 28016 chr8 72890307 72890411 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -118503 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 22033 chr4 175458079 175458183 + 0 NA Intergenic MER4B|LTR|ERV1 329545 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 26012 chr7 33191481 33191613 + 0 NA intron (NM_001033604, intron 5 of 21) intron (NM_001033604, intron 5 of 21) 62007 NM_014451 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 10806 chr15 100043142 100043297 + 0 NA intron (NM_139057, intron 18 of 21) intron (NM_139057, intron 18 of 21) 236196 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 4844 chr11 12176038 12176142 + 0 NA intron (NR_144420, intron 3 of 27) L4_C_Mam|LINE|RTE-X 12407 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 11038 chr16 13919900 13920095 + 0 NA promoter-TSS (NM_005236) promoter-TSS (NM_005236) -160 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 23636 chr5 159987431 159987535 + 0 NA Intergenic CpG -21617 NM_001282500 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 21467 chr4 76213650 76213770 + 0 NA promoter-TSS (NM_001242936) promoter-TSS (NM_001242936) 189 NM_005506 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 17655 chr20 14337581 14337730 + 0 NA promoter-TSS (NM_198391) promoter-TSS (NM_198391) 12 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 1227 chr1 86517440 86517620 + 0 NA Intergenic MER45B|DNA|hAT-Tip100 -29546 NR_024602 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 16234 chr2 120735925 120735936 + 0 NA Intergenic CpG -61361 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 29359 chr9 81456560 81456664 + 0 NA Intergenic Intergenic 232923 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 24092 chr6 15062739 15062744 + 0 NA Intergenic MER46C|DNA|TcMar-Tigger -183234 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 13688 chr18 62187015 62187146 + 0 NA promoter-TSS (NM_012327) promoter-TSS (NM_012327) -24 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 7766 chr12 121038906 121038958 + 0 NA exon (NM_198213, exon 1 of 5) exon (NM_198213, exon 1 of 5) 310 NM_001261825 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 28464 chr8 116874877 116874881 + 0 NA promoter-TSS (NR_037404) promoter-TSS (NR_037404) -13 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 22744 chr5 76290440 76290497 + 0 NA intron (NM_001297716, intron 6 of 12) intron (NM_001297716, intron 6 of 12) -112787 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 18336 chr20 58856214 58856318 + 0 NA intron (NM_001309883, intron 3 of 5) intron (NM_001309883, intron 3 of 5) 3285 NM_001309883 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|POH|SCG6|SgVI GNAS complex locus protein-coding 14333 chr19 29942579 29942730 + 0 NA exon (NM_003796, exon 1 of 11) exon (NM_003796, exon 1 of 11) 415 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1, prefoldin like chaperone protein-coding 6586 chr12 9798128 9798228 + 0 NA Intergenic Intergenic -29303 NM_001291823 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 13679 chr18 61581971 61582086 + 0 NA Intergenic Intergenic -166148 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 14857 chr19 57814862 57815033 + 0 NA promoter-TSS (NM_024762) promoter-TSS (NM_024762) -34 NM_024762 79818 Hs.560727 NM_024762 ENSG00000178935 ZNF552 - zinc finger protein 552 protein-coding 2928 chr1 230426653 230426767 + 0 NA promoter-TSS (NM_001258311) promoter-TSS (NM_001258311) -782 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 25530 chr7 975491 975622 + 0 NA promoter-TSS (NM_001031617) promoter-TSS (NM_001031617) 43 NM_001031617 90639 Hs.121593 NM_001031617 ENSG00000240230 COX19 - COX19, cytochrome c oxidase assembly factor protein-coding 12243 chr17 27456256 27456360 + 0 NA Intergenic CpG -15702 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 26017 chr7 33874628 33874656 + 0 NA Intergenic Intergenic -30269 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 2193 chr1 182604438 182604582 + 0 NA promoter-TSS (NM_002928) promoter-TSS (NM_002928) -97 NM_002928 6004 Hs.413297 NM_002928 ENSG00000143333 RGS16 A28-RGS14|A28-RGS14P|RGS-R regulator of G-protein signaling 16 protein-coding 2636 chr1 212559015 212559210 + 0 NA Intergenic CpG -6222 NM_001030287 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 22963 chr5 103523489 103523602 + 0 NA Intergenic Intergenic 18440 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 8680 chr14 21104024 21104128 + 0 NA TTS (NM_001146683) TTS (NM_001146683) 628 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 19898 chr3 112780205 112780254 + 0 NA Intergenic L2a|LINE|L2 -30910 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 20201 chr3 134381985 134382112 + 0 NA Intergenic Intergenic -6631 NM_001278683 51421 Hs.426312 NM_016201 ENSG00000114019 AMOTL2 LCCP angiomotin like 2 protein-coding 16046 chr2 101985550 101985683 + 0 NA TTS (NR_103791) TTS (NR_103791) 2151 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 29283 chr9 76216229 76216386 + 0 NA intron (NM_001190482, intron 20 of 36) intron (NM_001190482, intron 20 of 36) 178221 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 22329 chr5 27907047 27907150 + 0 NA Intergenic L2a|LINE|L2 380567 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 12096 chr17 10073210 10073336 + 0 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) -36526 NM_201432 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 MLL/GAS7 growth arrest specific 7 protein-coding 23775 chr5 176448068 176448219 + 0 NA promoter-TSS (NM_014613) promoter-TSS (NM_014613) -212 NM_014613 23197 Hs.484242 NM_014613 ENSG00000113194 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 16431 chr2 146874489 146874593 + 0 NA Intergenic MamSINE1|SINE|tRNA-RTE 287484 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 30264 chr9 130834722 130834872 + 0 NA promoter-TSS (NM_005157) promoter-TSS (NM_005157) -458 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 1183 chr1 84387225 84387329 + 0 NA Intergenic L2c|LINE|L2 -2476 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 24051 chr6 12324266 12324395 + 0 NA Intergenic Intergenic 34034 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 21064 chr3 197003043 197003088 + 0 NA 3' UTR (NM_005929, exon 16 of 16) 3' UTR (NM_005929, exon 16 of 16) 159 NR_038285 100507057 Hs.666451 NR_038285 ENSG00000228109 MELTF-AS1 MFI2-AS1 MELTF antisense RNA 1 ncRNA 2747 chr1 221439470 221439650 + 0 NA Intergenic Intergenic -103264 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 16311 chr2 130182156 130182293 + 0 NA promoter-TSS (NM_001171083) promoter-TSS (NM_001171083) 302 NM_001330282 80097 Hs.469925 NM_025029 ENSG00000152082 MZT2B FAM128B|MOZART2B mitotic spindle organizing protein 2B protein-coding 7556 chr12 103957168 103957268 + 0 NA promoter-TSS (NM_001135570) promoter-TSS (NM_001135570) -3 NM_001135570 728568 Hs.42547 NM_001135570 ENSG00000204954 C12orf73 - chromosome 12 open reading frame 73 protein-coding 14819 chr19 55516997 55517151 + 0 NA intron (NM_001144950, intron 13 of 13) CpG 19220 NM_001101401 646643 Hs.532676 NM_001101401 ENSG00000187550 SBK2 SGK069 SH3 domain binding kinase family member 2 protein-coding 11780 chr16 84994967 84995092 + 0 NA intron (NM_017740, intron 2 of 7) intron (NM_017740, intron 2 of 7) 16506 NM_017740 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 27466 chr8 18918405 18918472 + 0 NA intron (NM_015310, intron 2 of 15) L2c|LINE|L2 95248 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 30684 chrX 48574773 48574899 + 0 NA intron (NM_006743, intron 1 of 6) CpG 483 NM_006743 5935 Hs.301404 NM_006743 ENSG00000102317 RBM3 IS1-RNPL|RNPL RNA binding motif (RNP1, RRM) protein 3 protein-coding 29647 chr9 97697289 97697440 + 0 NA promoter-TSS (NR_027302) promoter-TSS (NR_027302) 45 NR_027302 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 12974 chr17 74454083 74454187 + 0 NA Intergenic CpG -12238 NM_001330456 11314 Hs.9688 NM_007261 ENSG00000167851 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 30526 chrX 16239339 16239443 + 0 NA Intergenic Intergenic 71910 NM_001277307 645864 Hs.632792 NM_001277307 ENSG00000182798 MAGEB17 - MAGE family member B17 protein-coding 20659 chr3 172153396 172153553 + 0 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 112920 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 18783 chr22 30315042 30315114 + 0 NA intron (NM_001204240, intron 1 of 8) intron (NM_001204240, intron 1 of 8) 11888 NM_001204240 83874 Hs.655273 NM_031937 ENSG00000099992 TBC1D10A EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 TBC1 domain family member 10A protein-coding 8372 chr13 75762807 75762880 + 0 NA intron (NM_001306080, intron 4 of 30) intron (NM_001306080, intron 4 of 30) 2182 NM_015842 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 29695 chr9 99873610 99873714 + 0 NA Intergenic L3|LINE|CR1 32939 NR_038853 441461 Hs.163155 NR_038853 ENSG00000255145 STX17-AS1 - STX17 antisense RNA 1 ncRNA 27178 chr7 144835914 144836077 + 0 NA promoter-TSS (NM_022445) promoter-TSS (NM_022445) 58 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 2417 chr1 202810905 202811009 + 0 NA promoter-TSS (NR_046326) promoter-TSS (NR_046326) 11 NR_046326 100506696 Hs.23459 NR_046325 ENSG00000228288 PCAT6 KDM5B-AS1|KDM5BAS1|PCAN-R1|ncRNA-a2|onco-lncRNA-96 prostate cancer associated transcript 6 (non-protein coding) ncRNA 9032 chr14 54488894 54489112 + 0 NA promoter-TSS (NM_004124) promoter-TSS (NM_004124) 23 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 18635 chr22 19854908 19855040 + 0 NA promoter-TSS (NM_053004) promoter-TSS (NM_053004) -35 NM_053004 54584 Hs.105642 NM_053004 ENSG00000185838 GNB1L DGCRK3|FKSG1|GY2|WDR14|WDVCF G protein subunit beta 1 like protein-coding 8402 chr13 78603500 78603604 + 0 NA promoter-TSS (NM_006237) promoter-TSS (NM_006237) 8 NM_006237 5457 Hs.654522 NM_006237 ENSG00000152192 POU4F1 BRN3A|Oct-T1|RDC-1|brn-3A POU class 4 homeobox 1 protein-coding 25891 chr7 25180482 25180573 + 0 NA promoter-TSS (NM_138811) promoter-TSS (NM_138811) -329 NM_138811 136895 Hs.122055 NM_138811 ENSG00000153790 C7orf31 - chromosome 7 open reading frame 31 protein-coding 20986 chr3 192917964 192918026 + 0 NA 5' UTR (NM_178496, exon 1 of 2) 5' UTR (NM_178496, exon 1 of 2) 166 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 10320 chr15 66863013 66863136 + 0 NA Intergenic Intergenic 93441 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 1369 chr1 96522201 96522305 + 0 NA Intergenic L2c|LINE|L2 -148128 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 19528 chr3 51500244 51500348 + 0 NA promoter-TSS (NM_001171904) promoter-TSS (NM_001171904) -294 NM_001171904 9730 Hs.716623 NM_014703 ENSG00000145041 DCAF1 RIP|VPRBP DDB1 and CUL4 associated factor 1 protein-coding 8535 chr13 103282692 103282803 + 0 NA Intergenic Intergenic -142453 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 24614 chr6 44452883 44452987 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger 17294 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 17700 chr20 18288146 18288274 + 0 NA promoter-TSS (NM_001083330) promoter-TSS (NM_001083330) -73 NM_001282996 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 13704 chr18 63367548 63367701 + 0 NA promoter-TSS (NM_002035) promoter-TSS (NM_002035) -351 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 11917 chr17 2396935 2397039 + 0 NA intron (NM_020310, intron 1 of 5) intron (NM_020310, intron 1 of 5) 3977 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 10700 chr15 90388611 90388747 + 0 NA intron (NM_003870, intron 1 of 37) CpG 438 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 54 chr1 3482386 3482490 + 0 NA Intergenic MIRb|SINE|MIR 27855 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 1151 chr1 78092801 78092905 + 0 NA intron (NM_017655, intron 2 of 5) intron (NM_017655, intron 2 of 5) 46948 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 3347 chr10 17063241 17063386 + 0 NA intron (NM_001081, intron 22 of 66) intron (NM_001081, intron 22 of 66) 66504 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 23146 chr5 126776782 126776886 + 0 NA promoter-TSS (NM_001198557) promoter-TSS (NM_001198557) 211 NR_134488 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 16153 chr2 112645596 112645700 + 0 NA promoter-TSS (NM_005415) promoter-TSS (NM_005415) -209 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 10230 chr15 60932656 60932802 + 0 NA intron (NM_134261, intron 1 of 10) AmnSINE1|SINE|5S-Deu-L2 251160 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 1204 chr1 85225199 85225317 + 0 NA Intergenic Intergenic -24213 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 23447 chr5 146966159 146966294 + 0 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) -46720 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 8525 chr13 102596816 102596938 + 0 NA promoter-TSS (NM_001330588) promoter-TSS (NM_001330588) -59 NM_003291 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 15211 chr2 26606936 26607090 + 0 NA intron (NM_001029881, intron 3 of 6) intron (NM_001029881, intron 3 of 6) 34355 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 7896 chr12 131860914 131860919 + 0 NA Intergenic Intergenic 32523 NM_016155 4326 Hs.709245 NM_016155 ENSG00000198598 MMP17 MMP-17|MT4-MMP|MT4MMP|MTMMP4 matrix metallopeptidase 17 protein-coding 1009 chr1 63731665 63731769 + 0 NA Intergenic Intergenic -42302 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 25878 chr7 24907790 24907894 + 0 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) -15221 NR_104112 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 11484 chr16 66880469 66880476 + 0 NA promoter-TSS (NM_001329930) promoter-TSS (NM_001329930) -30 NM_001329933 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 16468 chr2 151828570 151828674 + 0 NA promoter-TSS (NM_001037174) promoter-TSS (NM_001037174) -127 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 30740 chrX 53422715 53422739 + 0 NA promoter-TSS (NM_006306) promoter-TSS (NM_006306) 1 NM_006306 8243 Hs.211602 NM_006306 ENSG00000072501 SMC1A CDLS2|DXS423E|SB1.8|SMC1|SMC1L1|SMC1alpha|SMCB structural maintenance of chromosomes 1A protein-coding 13504 chr18 46152845 46153064 + 0 NA Intergenic Intergenic -21068 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 11690 chr16 79402539 79402643 + 0 NA Intergenic Intergenic 198134 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 403 chr1 25906373 25906508 + 0 NA promoter-TSS (NM_001145454) promoter-TSS (NM_001145454) 14 NR_037481 100500808 NR_037481 ENSG00000117632 MIR3917 mir-3917 microRNA 3917 ncRNA 4825 chr11 10931370 10931474 + 0 NA Intergenic CpG 73205 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 19790 chr3 102400875 102400979 + 0 NA Intergenic Intergenic -34088 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 27420 chr8 13224435 13224583 + 0 NA intron (NM_182643, intron 5 of 17) intron (NM_182643, intron 5 of 17) 52039 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 17780 chr20 23350658 23350765 + 0 NA promoter-TSS (NM_013248) promoter-TSS (NM_013248) -25 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 25939 chr7 28041500 28041604 + 0 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -138905 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 13209 chr18 2304507 2304611 + 0 NA Intergenic Intergenic 266944 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 9856 chr15 34360459 34360563 + 0 NA intron (NM_153613, intron 11 of 13) intron (NM_153613, intron 11 of 13) 6683 NM_153613 254531 Hs.352614 NM_153613 ENSG00000176454 LPCAT4 AGPAT7|AYTL3|LPAAT-eta|LPEAT2 lysophosphatidylcholine acyltransferase 4 protein-coding 27586 chr8 26577739 26577905 + 0 NA promoter-TSS (NM_001244604) promoter-TSS (NM_001244604) -2 NM_001386 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 21568 chr4 88592278 88592439 + 0 NA promoter-TSS (NM_001271602) promoter-TSS (NM_001271602) -65 NM_014606 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 13256 chr18 9612346 9612463 + 0 NA intron (NM_001042388, intron 2 of 19) intron (NM_001042388, intron 2 of 19) 2203 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 27496 chr8 21919476 21919639 + 0 NA promoter-TSS (NM_015024) promoter-TSS (NM_015024) -112 NM_015024 23039 Hs.172685 NM_015024 ENSG00000130227 XPO7 EXP7|RANBP16 exportin 7 protein-coding 17901 chr20 34400859 34400963 + 0 NA intron (NM_001257138, intron 3 of 23) AluSz6|SINE|Alu 37676 NM_001324198 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 11164 chr16 25111637 25111790 + 0 NA promoter-TSS (NR_120306) promoter-TSS (NR_120306) -13 NM_001032391 51451 Hs.337730 NM_016309 ENSG00000205629 LCMT1 CGI-68|LCMT|PPMT1 leucine carboxyl methyltransferase 1 protein-coding 24274 chr6 28141760 28141901 + 0 NA promoter-TSS (NM_001278121) promoter-TSS (NM_001278121) -80 NM_001278122 7745 Hs.57679 NM_006298 ENSG00000198315 ZKSCAN8 LD5-1|ZNF192|ZSCAN40 zinc finger with KRAB and SCAN domains 8 protein-coding 16351 chr2 134119770 134119883 + 0 NA Intergenic Intergenic -7299 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 8792 chr14 31229881 31229985 + 0 NA Intergenic Intergenic -22410 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 22377 chr5 36242157 36242299 + 0 NA promoter-TSS (NM_001287341) promoter-TSS (NM_001287341) 51 NM_001287341 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 16352 chr2 134120990 134121094 + 0 NA Intergenic CpG -6083 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 18740 chr22 27919349 27919441 + 0 NA promoter-TSS (NM_001284278) promoter-TSS (NM_001284278) 19 NR_026963 284900 Hs.602319 NR_026962 ENSG00000235954 TTC28-AS1 TTC28-AS|TTC28AS|dJ353E16.2 TTC28 antisense RNA 1 ncRNA 7003 chr12 51024950 51025072 + 0 NA intron (NM_001174125, intron 1 of 15) intron (NM_001174125, intron 1 of 15) 1130 NM_001174129 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 18515 chr21 36784181 36784285 + 0 NA intron (NM_000411, intron 7 of 11) intron (NM_000411, intron 7 of 11) 85100 NM_009586 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 single-minded family bHLH transcription factor 2 protein-coding 17672 chr20 16573430 16573544 + 0 NA promoter-TSS (NM_001199865) promoter-TSS (NM_001199865) -53 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 9265 chr14 68255990 68256156 + 0 NA intron (NM_002877, intron 7 of 10) intron (NM_002877, intron 7 of 10) 372714 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 4366 chr10 112383453 112383515 + 0 NA intron (NM_016234, intron 1 of 20) intron (NM_016234, intron 1 of 20) 7286 NM_016234 51703 Hs.11638 NM_016234 ENSG00000197142 ACSL5 ACS2|ACS5|FACL5 acyl-CoA synthetase long-chain family member 5 protein-coding 23606 chr5 157925039 157925048 + 0 NA Intergenic Intergenic -65868 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 22871 chr5 91058612 91058780 + 0 NA intron (NM_032119, intron 85 of 89) intron (NM_032119, intron 85 of 89) 255706 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 30231 chr9 129460442 129460586 + 0 NA Intergenic CpG -28146 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 16193 chr2 118113051 118113179 + 0 NA Intergenic Intergenic 24565 NM_001321329 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 15640 chr2 62569418 62569474 + 0 NA Intergenic Intergenic -62977 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 23414 chr5 143246155 143246290 + 0 NA Intergenic Intergenic 53722 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 3454 chr10 24963109 24963285 + 0 NA Intergenic Intergenic -10553 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 11620 chr16 74296724 74296864 + 0 NA promoter-TSS (NM_002811) promoter-TSS (NM_002811) 19 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 8189 chr13 43805185 43805289 + 0 NA Intergenic Intergenic -18257 NM_001347965 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 27504 chr8 22239032 22239142 + 0 NA Intergenic L2a|LINE|L2 5956 NR_029714 407037 NR_029714 ENSG00000208037 MIR320A MIRN320|MIRN320A|hsa-mir-320a|mir-320a microRNA 320a ncRNA 18596 chr21 46323821 46323994 + 0 NA promoter-TSS (NM_001286477) promoter-TSS (NM_001286477) -8 NM_001286476 54058 Hs.236572 NM_058180 ENSG00000160298 C21orf58 - chromosome 21 open reading frame 58 protein-coding 6626 chr12 12813209 12813316 + 0 NA promoter-TSS (NM_016355) promoter-TSS (NM_016355) -84 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 28174 chr8 90645027 90645131 + 0 NA intron (NM_001008495, intron 1 of 2) intron (NM_001008495, intron 1 of 2) 826 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 19084 chr3 4712250 4712354 + 0 NA intron (NM_002222, intron 38 of 57) intron (NM_002222, intron 38 of 57) 39288 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 17349 chr2 237662872 237662976 + 0 NA intron (NM_001137550, intron 1 of 23) MER66B|LTR|ERV1 -29240 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 26276 chr7 51123754 51123907 + 0 NA intron (NM_001287438, intron 6 of 7) intron (NM_001287438, intron 6 of 7) 193031 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 9125 chr14 60248048 60248152 + 0 NA intron (NM_177952, intron 1 of 5) intron (NM_177952, intron 1 of 5) -1148 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 3106 chr1 244214506 244214610 + 0 NA Intergenic Intergenic -138077 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 2488 chr1 205592003 205592172 + 0 NA intron (NM_181644, intron 6 of 9) CpG 23103 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 24405 chr6 33200739 33200757 + 0 NA promoter-TSS (NM_001288777) promoter-TSS (NM_001288777) -52 NM_021976 6257 Hs.388034 NM_021976 ENSG00000204231 RXRB DAUDI6|H-2RIIBP|NR2B2|RCoR-1 retinoid X receptor beta protein-coding 19687 chr3 85589400 85589504 + 0 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 84393 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 30741 chrX 53422754 53422760 + 0 NA promoter-TSS (NM_006306) promoter-TSS (NM_006306) -29 NM_001281463 8243 Hs.211602 NM_006306 ENSG00000072501 SMC1A CDLS2|DXS423E|SB1.8|SMC1|SMC1L1|SMC1alpha|SMCB structural maintenance of chromosomes 1A protein-coding 9764 chr14 105774072 105774161 + 0 NA Intergenic Intergenic 83456 NR_130468 100616374 NR_130468 ENSG00000265612 MIR4539 - microRNA 4539 ncRNA 3869 chr10 72292308 72292442 + 0 NA Intergenic Intergenic 18456 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 1985 chr1 165364761 165364865 + 0 NA Intergenic Intergenic -8098 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 2669 chr1 214447042 214447144 + 0 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 104588 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 3567 chr10 34696548 34696652 + 0 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 118725 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 12752 chr17 57519320 57519403 + 0 NA intron (NM_170721, intron 5 of 9) intron (NM_170721, intron 5 of 9) 4236 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 6712 chr12 19274024 19274180 + 0 NA intron (NM_001256470, intron 10 of 31) intron (NM_001256470, intron 10 of 31) 68777 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 28689 chr8 130604503 130604607 + 0 NA Intergenic Intergenic -160895 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 29648 chr9 97704189 97704293 + 0 NA Intergenic Intergenic -6832 NM_000380 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 19067 chr22_KI270733v1_random 149070 149210 + 0 NA Intergenic AluSx1|SINE|Alu 18936 NR_003287 100008589 NR_003287 RNA28S5 RN28S1 RNA, 28S ribosomal 5 rRNA 16553 chr2 161123382 161123486 + 0 NA Intergenic Intergenic -13521 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 17050 chr2 212956774 212956847 + 0 NA Intergenic Intergenic -30474 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 4863 chr11 13160956 13161047 + 0 NA Intergenic Tigger19a|DNA|TcMar-Tigger -116726 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 29678 chr9 98796591 98796715 + 0 NA promoter-TSS (NM_173551) promoter-TSS (NM_173551) -111 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 4628 chr10 131981908 131982142 + 0 NA promoter-TSS (NM_004052) promoter-TSS (NM_004052) -12 NM_004052 664 Hs.144873 NM_004052 ENSG00000176171 BNIP3 NIP3 BCL2 interacting protein 3 protein-coding 11953 chr17 4365300 4365450 + 0 NA intron (NM_003342, intron 1 of 5) CpG 1299 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 12663 chr17 50152063 50152081 + 0 NA Intergenic Intergenic -1555 NM_032595 84687 Hs.514323 NM_032595 ENSG00000108819 PPP1R9B PPP1R6|PPP1R9|SPINO|Spn protein phosphatase 1 regulatory subunit 9B protein-coding 13279 chr18 12402899 12403003 + 0 NA Intergenic Intergenic -4945 NM_001142405 10650 Hs.514718 NM_006553 ENSG00000141391 PRELID3A C18orf43|HFL-EDDG1|SLMO1 PRELI domain containing 3A protein-coding 26405 chr7 73828379 73828437 + 0 NA Intergenic Intergenic -2455 NM_001305 1364 Hs.647036 NM_001305 ENSG00000189143 CLDN4 CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R claudin 4 protein-coding 20620 chr3 169812557 169812661 + 0 NA 5' UTR (NM_001172779, exon 1 of 11) 5' UTR (NM_001172779, exon 1 of 11) 177 NM_001172780 151827 Hs.591289 NM_153353 ENSG00000171757 LRRC34 - leucine rich repeat containing 34 protein-coding 18100 chr20 45801169 45801273 + 0 NA intron (NM_052951, intron 5 of 12) intron (NM_052951, intron 5 of 12) 9284 NM_052951 116092 Hs.472852 NM_052951 ENSG00000101457 DNTTIP1 C20orf167|Tdif1|dJ447F3.4 deoxynucleotidyltransferase terminal interacting protein 1 protein-coding 17579 chr20 10511653 10511806 + 0 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 76426 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 1932 chr1 161177499 161177595 + 0 NA 5' UTR (NM_001199873, exon 1 of 8) 5' UTR (NM_001199873, exon 1 of 8) 421 NM_001199874 8703 Hs.321231 NM_003779 ENSG00000158850 B4GALT3 beta4Gal-T3 beta-1,4-galactosyltransferase 3 protein-coding 21640 chr4 102501836 102501969 + 0 NA promoter-TSS (NM_001319226) promoter-TSS (NM_001319226) 4 NM_001319226 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 30125 chr9 126791431 126791600 + 0 NA Intergenic Charlie8|DNA|hAT-Charlie -13491 NM_014007 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 15108 chr2 17879385 17879489 + 0 NA intron (NM_002252, intron 1 of 2) CpG 780 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 23058 chr5 115462148 115462252 + 0 NA Intergenic HAL1|LINE|L1 82694 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 1250 chr1 87718473 87718539 + 0 NA Intergenic Intergenic -346851 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 6642 chr12 13135874 13136010 + 0 NA Intergenic Intergenic -32246 NM_001206842 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 9333 chr14 72666742 72666825 + 0 NA intron (NM_012074, intron 9 of 9) intron (NM_012074, intron 9 of 9) 149963 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 27459 chr8 18506807 18506911 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 115614 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 17206 chr2 226650268 226650398 + 0 NA Intergenic Intergenic 8460 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 15172 chr2 24015727 24015923 + 0 NA intron (NM_001346880, intron 2 of 13) intron (NM_001346880, intron 2 of 13) 5738 NM_001346880 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 5810 chr11 86955358 86955531 + 0 NA promoter-TSS (NR_038905) promoter-TSS (NR_038905) -46 NM_012193 8322 Hs.591968 NM_012193 ENSG00000174804 FZD4 CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4 frizzled class receptor 4 protein-coding 20998 chr3 193593117 193593250 + 0 NA promoter-TSS (NM_015560) promoter-TSS (NM_015560) 39 NM_015560 4976 Hs.594504 NM_015560 ENSG00000198836 OPA1 BERHS|MGM1|MTDPS14|NPG|NTG|largeG OPA1, mitochondrial dynamin like GTPase protein-coding 19757 chr3 100047558 100047656 + 0 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 66906 NM_182909 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 3957 chr10 78033628 78033792 + 0 NA promoter-TSS (NM_033022) promoter-TSS (NM_033022) -50 NM_001026 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24 ribosomal protein S24 protein-coding 8409 chr13 79441770 79441824 + 0 NA Intergenic LTR22A|LTR|ERVK 35488 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 22320 chr5 21152686 21152836 + 0 NA Intergenic MamGypsy2-I|LTR|Gypsy -306719 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - glucuronidase, beta pseudogene 1 pseudo 10441 chr15 74461108 74461260 + 0 NA promoter-TSS (NM_001286739) promoter-TSS (NM_001286739) 4 NM_001286742 84993 Hs.334713 NM_032907 ENSG00000138629 UBL7 BMSC-UbP|TCBA1 ubiquitin like 7 protein-coding 728 chr1 42035968 42036103 + 0 NA promoter-TSS (NR_038261) promoter-TSS (NR_038261) -110 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 9638 chr14 98069969 98070113 + 0 NA Intergenic Intergenic -91917 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 11169 chr16 27169909 27169945 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -33559 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 14816 chr19 55461639 55461775 + 0 NA promoter-TSS (NM_001136201) promoter-TSS (NM_001136201) -25 NM_001136202 79763 Hs.467306 NM_024710 ENSG00000063241 ISOC2 - isochorismatase domain containing 2 protein-coding 11083 chr16 19113916 19114014 + 0 NA promoter-TSS (NM_001034841) promoter-TSS (NM_001034841) 33 NR_028028 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein like 2 protein-coding 29 chr1 1724415 1724519 + 0 NA promoter-TSS (NR_132739) promoter-TSS (NR_132739) 98 NR_132740 728642 Hs.651228 NM_024011 ENSG00000008128 CDK11A CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA cyclin dependent kinase 11A protein-coding 5831 chr11 90223064 90223239 + 0 NA 5' UTR (NM_001144073, exon 1 of 10) 5' UTR (NM_001144073, exon 1 of 10) 213 NM_012124 26973 Hs.22857 NM_012124 ENSG00000110172 CHORDC1 CHP1 cysteine and histidine rich domain containing 1 protein-coding 10805 chr15 99967954 99968096 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 161002 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 30140 chr9 127396830 127397031 + 0 NA promoter-TSS (NM_001271711) promoter-TSS (NM_001271711) -208 NM_001271712 29988 Hs.179522 NM_014580 ENSG00000136856 SLC2A8 GLUT8|GLUTX1 solute carrier family 2 member 8 protein-coding 24616 chr6 44674627 44674731 + 0 NA Intergenic Intergenic -122798 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 4087 chr10 93384055 93384154 + 0 NA intron (NM_133337, intron 18 of 52) intron (NM_133337, intron 18 of 52) 98213 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 28818 chr8 143739283 143739442 + 0 NA intron (NR_033849, intron 2 of 3) intron (NR_033849, intron 2 of 3) 5222 NR_033849 100128338 Hs.493171 NR_033849 ENSG00000203499 FAM83H-AS1 onco-lncRNA-3 FAM83H antisense RNA 1 (head to head) ncRNA 20226 chr3 136960926 136961080 + 0 NA intron (NM_144717, intron 1 of 6) intron (NM_144717, intron 1 of 6) 3138 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 11879 chr17 925211 925315 + 0 NA intron (NM_022463, intron 1 of 7) L3|LINE|CR1 15631 NR_135633 101927727 Hs.666198 NR_135633 ENSG00000262003 LOC101927727 - uncharacterized LOC101927727 ncRNA 27207 chr7 149285099 149285223 + 0 NA promoter-TSS (NR_036573) promoter-TSS (NR_036573) -120 NR_036573 155060 Hs.490512 NR_015357 ENSG00000244560 LOC155060 - AI894139 pseudogene pseudo 6358 chr11 130146451 130146600 + 0 NA Intergenic Intergenic -13262 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 16043 chr2 101697435 101697618 + 0 NA promoter-TSS (NM_001242560) promoter-TSS (NM_001242560) -177 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 22495 chr5 50963002 50963106 + 0 NA Intergenic Intergenic 7133 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 30408 chrUn_GL000216v2 80055 80207 + 0 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 22876 chr5 91311787 91311891 + 0 NA intron (NR_103549, intron 2 of 2) AmnSINE1|SINE|5S-Deu-L2 2563 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 10701 chr15 90400980 90401093 + 0 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 12795 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 29973 chr9 116088056 116088160 + 0 NA Intergenic Intergenic -65684 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 15021 chr2 11830336 11830442 + 0 NA Intergenic Intergenic 6597 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 2994 chr1 234657298 234657412 + 0 NA intron (NR_125944, intron 3 of 3) MIR3|SINE|MIR 11066 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 6587 chr12 9814332 9814413 + 0 NA Intergenic L1M2|LINE|L1 -13109 NM_001291823 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 21223 chr4 20700279 20700428 + 0 NA promoter-TSS (NM_001317849) promoter-TSS (NM_001317849) -60 NM_001330746 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 PARK2 coregulated like protein-coding 16060 chr2 104873517 104873621 + 0 NA promoter-TSS (NR_110373) promoter-TSS (NR_110373) -974 NR_110373 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 12147 chr17 16589464 16589527 + 0 NA Intergenic CpG -20283 NM_001346171 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 3844 chr10 70815792 70815918 + 0 NA promoter-TSS (NM_003901) promoter-TSS (NM_003901) -93 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 16084 chr2 106887096 106887200 + 0 NA promoter-TSS (NM_001322362) promoter-TSS (NM_001322362) -41 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 16616 chr2 168525091 168525224 + 0 NA intron (NM_203463, intron 1 of 9) L3|LINE|CR1 -57786 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 30744 chrX 53684235 53684297 + 0 NA intron (NM_031407, intron 2 of 83) CpG 2463 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding 18391 chr20 62857375 62857411 + 0 NA intron (NM_001301726, intron 4 of 5) intron (NM_001301726, intron 4 of 5) 4370 NM_006602 10732 Hs.126248 NM_006602 ENSG00000101190 TCFL5 CHA|E2BP-1|Figlb|SOSF1|bHLHe82 transcription factor like 5 protein-coding 3889 chr10 73358749 73358887 + 0 NA promoter-TSS (NM_145170) promoter-TSS (NM_145170) 41 NM_145170 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 9600 chr14 94345467 94345512 + 0 NA Intergenic Intergenic 21213 NM_006220 390502 Hs.525557 NM_006220 ENSG00000258597 SERPINA2 ARGS|ATR|PIL|SERPINA2P|psiATR serpin family A member 2 (gene/pseudogene) protein-coding 11820 chr16 87777936 87778021 + 0 NA non-coding (NR_120309, exon 2 of 4) non-coding (NR_120309, exon 2 of 4) 1170 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 28034 chr8 73878984 73879088 + 0 NA promoter-TSS (NM_001271015) promoter-TSS (NM_001271015) -126 NR_073120 55284 Hs.128841 NM_018299 ENSG00000104343 UBE2W UBC-16|UBC16 ubiquitin conjugating enzyme E2 W protein-coding 2086 chr1 174159489 174159528 + 0 NA promoter-TSS (NM_014857) promoter-TSS (NM_014857) 94 NM_014857 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 7337 chr12 82686765 82686869 + 0 NA promoter-TSS (NM_001320321) promoter-TSS (NM_001320321) -338 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 15671 chr2 64831368 64831526 + 0 NA Intergenic Intergenic 32184 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 10129 chr15 53072186 53072230 + 0 NA Intergenic Intergenic -282196 NM_004498 3175 Hs.658573 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 24731 chr6 56091292 56091396 + 0 NA intron (NM_001318751, intron 18 of 30) intron (NM_001318751, intron 18 of 30) 317 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 15465 chr2 45173553 45173657 + 0 NA TTS (NR_033831) TTS (NR_033831) 81336 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 23534 chr5 151083539 151083643 + 0 NA intron (NM_001252390, intron 1 of 17) intron (NM_001252390, intron 1 of 17) -2503 NM_001258454 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 2699 chr1 217631330 217631434 + 0 NA promoter-TSS (NM_018040) promoter-TSS (NM_018040) 58 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 7398 chr12 89709683 89709713 + 0 NA non-coding (NR_028138, exon 1 of 1) non-coding (NR_028138, exon 1 of 1) 743 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 ATP2B1-AS1 LINC00936 ATP2B1 antisense RNA 1 ncRNA 13633 chr18 57776024 57776113 + 0 NA intron (NM_005603, intron 1 of 27) intron (NM_005603, intron 1 of 27) 27027 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 14467 chr19 40750574 40750724 + 0 NA promoter-TSS (NM_004596) promoter-TSS (NM_004596) -205 NM_004596 6626 Hs.466775 NM_004596 ENSG00000077312 SNRPA Mud1|U1-A|U1A small nuclear ribonucleoprotein polypeptide A protein-coding 24109 chr6 16711646 16711758 + 0 NA intron (NM_001128164, intron 2 of 7) AluJb|SINE|Alu -49436 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 29812 chr9 108744120 108744224 + 0 NA Intergenic Intergenic 111823 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 4319 chr10 106440642 106440688 + 0 NA Intergenic Intergenic 300500 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LOC105378470 - uncharacterized LOC105378470 ncRNA 18588 chr21 45055016 45055120 + 0 NA Intergenic Intergenic 18143 NR_027292 728039 Hs.309203 NM_032653 ENSG00000235374 SSR4P1 C21orf122|PRED57|PRED90 signal sequence receptor subunit 4 pseudogene 1 pseudo 27193 chr7 148941123 148941257 + 0 NA promoter-TSS (NR_001571) promoter-TSS (NR_001571) -298 NR_001571 6090 NR_001571 RNY5 Y5 RNA, Ro-associated Y5 ncRNA 13760 chr18 70422138 70422283 + 0 NA Intergenic Intergenic -37619 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 14363 chr19 35000184 35000295 + 0 NA promoter-TSS (NM_020895) promoter-TSS (NM_020895) -81 NM_001320034 57655 Hs.515351 NM_020895 ENSG00000089351 GRAMD1A KIAA1533 GRAM domain containing 1A protein-coding 29191 chr9 71726031 71726192 + 0 NA intron (NM_013390, intron 10 of 23) intron (NM_013390, intron 10 of 23) 42773 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 21110 chr4 1789753 1789857 + 0 NA Intergenic Intergenic -3507 NM_000142 2261 Hs.1420 NM_000142 ENSG00000068078 FGFR3 ACH|CD333|CEK2|HSFGFR3EX|JTK4 fibroblast growth factor receptor 3 protein-coding 12794 chr17 60078688 60078760 + 0 NA promoter-TSS (NR_135648) promoter-TSS (NR_135648) 207 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 14479 chr19 41774609 41774713 + 0 NA Intergenic Intergenic 19141 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 15995 chr2 98444831 98444980 + 0 NA promoter-TSS (NM_001566) promoter-TSS (NM_001566) 47 NM_001134224 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 6894 chr12 42744970 42745073 + 0 NA Intergenic Intergenic 52805 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LOC105369739 - uncharacterized LOC105369739 ncRNA 28718 chr8 133049771 133049828 + 0 NA intron (NM_001045556, intron 5 of 8) MIR3|SINE|MIR -3218 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 4902 chr11 15493063 15493167 + 0 NA Intergenic Intergenic -150770 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 20778 chr3 182609623 182609711 + 0 NA Intergenic Intergenic -102543 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 26279 chr7 51263723 51263827 + 0 NA intron (NM_001287438, intron 1 of 7) intron (NM_001287438, intron 1 of 7) 53086 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 20459 chr3 155270183 155270287 + 0 NA Intergenic Intergenic 23465 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 4066 chr10 91613839 91613943 + 0 NA Intergenic Intergenic -2431 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 18917 chr22 39292755 39292859 + 0 NA Intergenic Intergenic 21104 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 7479 chr12 97568706 97568810 + 0 NA Intergenic Intergenic 4946 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 29815 chr9 108934055 108934168 + 0 NA promoter-TSS (NM_017832) promoter-TSS (NM_017832) 221 NM_003640 8518 Hs.494738 NM_003640 ENSG00000070061 IKBKAP DYS|ELP1|FD|IKAP|IKI3|TOT1 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein protein-coding 21268 chr4 26584002 26584106 + 0 NA 5' UTR (NM_001292054, exon 1 of 18) 5' UTR (NM_001292054, exon 1 of 18) 130 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 10220 chr15 60393164 60393310 + 0 NA intron (NM_001136015, intron 1 of 13) intron (NM_001136015, intron 1 of 13) 4749 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 20731 chr3 179015621 179015632 + 0 NA Intergenic Intergenic 56242 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 15646 chr2 63588695 63588840 + 0 NA promoter-TSS (NM_001199111) promoter-TSS (NM_001199111) -34 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 28740 chr8 134691408 134691519 + 0 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 5095 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 12787 chr17 59707548 59707652 + 0 NA promoter-TSS (NM_001015509) promoter-TSS (NM_001015509) -2 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 11220 chr16 30430108 30430265 + 0 NA promoter-TSS (NR_134471) promoter-TSS (NR_134471) -134 NR_134470 79077 Hs.632191 NM_024096 ENSG00000179958 DCTPP1 CDA03|RS21C6|XTP3TPA dCTP pyrophosphatase 1 protein-coding 6375 chr11 131000491 131000595 + 0 NA Intergenic MER58A|DNA|hAT-Charlie -84056 NM_001347925 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 7790 chr12 122030181 122030270 + 0 NA intron (NM_001024808, intron 1 of 5) intron (NM_001024808, intron 1 of 5) 8339 NM_001024808 605 Hs.530970 NM_020993 ENSG00000110987 BCL7A BCL7 BCL tumor suppressor 7A protein-coding 14870 chr19 58381021 58381186 + 0 NA promoter-TSS (NM_138466) promoter-TSS (NM_138466) -81 NM_138466 116412 Hs.222236 NM_138466 ENSG00000152475 ZNF837 - zinc finger protein 837 protein-coding 14850 chr19 57559819 57559912 + 0 NA promoter-TSS (NM_001277090) promoter-TSS (NM_001277090) -2 NM_001277090 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 25047 chr6 116201060 116201164 + 0 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) 52986 NM_021648 23270 Hs.284141 NM_021648 ENSG00000187189 TSPYL4 dJ486I3.2 TSPY like 4 protein-coding 27158 chr7 143259905 143260009 + 0 NA intron (NR_133932, intron 2 of 2) L1MD3|LINE|L1 -3472 NM_001143679 373156 Hs.390667 NM_015917 ENSG00000197448 GSTK1 GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1 glutathione S-transferase kappa 1 protein-coding 22316 chr5 19988182 19988253 + 0 NA promoter-TSS (NM_001167667) promoter-TSS (NM_001167667) 27 NM_001167667 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 13884 chr19 2051194 2051347 + 0 NA promoter-TSS (NM_017572) promoter-TSS (NM_017572) -26 NM_017572 2872 Hs.515032 NM_017572 ENSG00000099875 MKNK2 GPRK7|MNK2 MAP kinase interacting serine/threonine kinase 2 protein-coding 28352 chr8 102756781 102756889 + 0 NA Intergenic Intergenic -100933 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 12164 chr17 17591695 17591896 + 0 NA promoter-TSS (NM_001267552) promoter-TSS (NM_001267552) -92 NM_001267551 10400 Hs.714193 NM_007169 ENSG00000133027 PEMT PEAMT|PEMPT|PEMT2|PLMT|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 4993 chr11 19979064 19979168 + 0 NA intron (NM_182964, intron 10 of 37) intron (NM_182964, intron 10 of 37) -43440 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 28423 chr8 109571110 109571214 + 0 NA Intergenic Intergenic 30536 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated, antigen, 9 protein-coding 11549 chr16 68995259 68995411 + 0 NA intron (NM_024562, intron 15 of 17) intron (NM_024562, intron 15 of 17) -110229 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 28348 chr8 102654066 102654081 + 0 NA promoter-TSS (NR_103760) promoter-TSS (NR_103760) -109 NM_001032282 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 8577 chr13 108218314 108218525 + 0 NA promoter-TSS (NM_032859) promoter-TSS (NM_032859) 4 NM_032859 84945 Hs.183528 NM_032859 ENSG00000139826 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 13366 chr18 27860150 27860300 + 0 NA Intergenic Intergenic 176360 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 8948 chr14 49586432 49586591 + 0 NA promoter-TSS (NR_002715) promoter-TSS (NR_002715) -69 NR_002715 6029 NR_002715 ENSG00000276168 RN7SL1 7L1a|7SL|RN7SL|RNSRP1 RNA, 7SL, cytoplasmic 1 ncRNA 5215 chr11 45147137 45147270 + 0 NA promoter-TSS (NM_001256696) promoter-TSS (NM_001256696) -140 NM_001256696 56981 Hs.178715 NM_020229 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 27763 chr8 43140237 43140390 + 0 NA promoter-TSS (NM_152419) promoter-TSS (NM_152419) -136 NM_152419 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|RP73|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 3540 chr10 32378777 32378881 + 0 NA promoter-TSS (NM_001282391) promoter-TSS (NM_001282391) -31 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 6421 chr12 12875 13006 + 0 NA Intergenic Intergenic 19075 NR_130745 100288778 Hs.459573 NR_130745 ENSG00000226210 LOC100288778 - WAS protein family homolog 1 pseudogene pseudo 14891 chr2 46520 46624 + 0 NA promoter-TSS (NM_001077710) promoter-TSS (NM_001077710) 16 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 2394 chr1 202023104 202023340 + 0 NA Intergenic Intergenic 12660 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 21806 chr4 133565628 133565732 + 0 NA Intergenic Intergenic 416390 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 14349 chr19 33064873 33064977 + 0 NA promoter-TSS (NM_033103) promoter-TSS (NM_033103) -7 NM_033103 85415 Hs.466435 NM_033103 ENSG00000131941 RHPN2 P76RBE|RHOBP rhophilin Rho GTPase binding protein 2 protein-coding 3326 chr10 14782730 14782834 + 0 NA Intergenic Intergenic -7885 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 8789 chr14 31026512 31026639 + 0 NA promoter-TSS (NM_001254728) promoter-TSS (NM_001254728) -68 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 sigma 1 subunit protein-coding 21997 chr4 169070126 169070284 + 0 NA Intergenic Intergenic -59888 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 5433 chr11 64311253 64311393 + 0 NA intron (NM_004451, intron 2 of 6) L2a|LINE|L2 5096 NM_001282450 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding 29363 chr9 81689831 81689948 + 0 NA promoter-TSS (NM_001303103) promoter-TSS (NM_001303103) 176 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 17988 chr20 38659099 38659178 + 0 NA Intergenic Intergenic 57204 NM_001164431 343578 Hs.451997 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 4209 chr10 100009821 100009964 + 0 NA promoter-TSS (NM_015221) promoter-TSS (NM_015221) 61 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 24162 chr6 19892375 19892539 + 0 NA Intergenic Intergenic 55087 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 22237 chr5 13664582 13664686 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 279846 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 18339 chr20 58981049 58981153 + 0 NA promoter-TSS (NM_198976) promoter-TSS (NM_198976) -107 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 10774 chr15 96265139 96265243 + 0 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -60737 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 11458 chr16 62240849 62241050 + 0 NA Intergenic MER61D|LTR|ERV1 -204114 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 4784 chr11 8814465 8814541 + 0 NA intron (NM_005418, intron 3 of 22) L2a|LINE|L2 -3168 NM_139157 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 22813 chr5 82406278 82406335 + 0 NA Intergenic Intergenic 126844 NM_001017971 92270 Hs.729805 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 18447 chr21 28885270 28885390 + 0 NA promoter-TSS (NR_047510) promoter-TSS (NR_047510) 43 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding 11383 chr16 55500060 55500201 + 0 NA intron (NM_001127891, intron 11 of 12) intron (NM_001127891, intron 11 of 12) -8871 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 558 chr1 32725270 32725398 + 0 NA Intergenic Intergenic -16577 NM_020888 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 30428 chrUn_KI270754v1 18086 18240 + 0 NA NA SST1|Satellite|centr NA NA 21394 chr4 56435589 56435795 + 0 NA promoter-TSS (NM_001079524) promoter-TSS (NM_001079524) -56 NM_002703 5471 Hs.331420 NM_002703 ENSG00000128059 PPAT ATASE|GPAT|PRAT phosphoribosyl pyrophosphate amidotransferase protein-coding 7854 chr12 124904922 124905026 + 0 NA Intergenic Intergenic 10067 NM_021009 7316 Hs.520348 NM_021009 ENSG00000150991 UBC HMG20 ubiquitin C protein-coding 22087 chr4 184287936 184288040 + 0 NA Intergenic Intergenic 65989 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LOC728175 - uncharacterized LOC728175 ncRNA 8806 chr14 32010684 32010788 + 0 NA Intergenic Intergenic 65963 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 9859 chr15 34583584 34583752 + 0 NA promoter-TSS (NR_027410) promoter-TSS (NR_027410) -98 NR_027410 440270 Hs.720151 NM_001023567 ENSG00000215252 GOLGA8B GOLGA5 golgin A8 family member B protein-coding 10509 chr15 78873772 78873783 + 0 NA intron (NM_001265604, intron 1 of 11) intron (NM_001265604, intron 1 of 11) 788 NM_001265604 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 27174 chr7 144384737 144384861 + 0 NA Intergenic Intergenic 25428 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 15026 chr2 11964097 11964201 + 0 NA Intergenic Intergenic -42967 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 25147 chr6 129889730 129889830 + 0 NA Intergenic Intergenic -28509 NM_001010876 253582 Hs.448372 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 7184 chr12 58920482 58920623 + 0 NA promoter-TSS (NM_153377) promoter-TSS (NM_153377) -14 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 26013 chr7 33590997 33591101 + 0 NA intron (NM_001033604, intron 20 of 21) intron (NM_001033604, intron 20 of 21) -313862 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 6101 chr11 113305844 113305976 + 0 NA Intergenic Intergenic -8619 NM_001318533 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 12270 chr17 28726124 28726228 + 0 NA promoter-TSS (NM_138463) promoter-TSS (NM_138463) 36 NM_138463 116238 Hs.499952 NM_138463 ENSG00000160606 TLCD1 - TLC domain containing 1 protein-coding 10238 chr15 62113030 62113181 + 0 NA Intergenic MIRb|SINE|MIR 46128 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 30306 chr9 133030495 133030628 + 0 NA promoter-TSS (NM_001122823) promoter-TSS (NM_001122823) -114 NM_001286709 9328 Hs.495417 NM_012087 ENSG00000148308 GTF3C5 TFIIIC63|TFIIICepsilon|TFiiiC2-63 general transcription factor IIIC subunit 5 protein-coding 28734 chr8 133769090 133769203 + 0 NA Intergenic Intergenic 8206 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 16429 chr2 146135554 146135658 + 0 NA Intergenic Intergenic -451451 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 5929 chr11 96389889 96389922 + 0 NA promoter-TSS (NM_024725) promoter-TSS (NM_024725) 14 NM_001318737 79780 Hs.525088 NM_014148 ENSG00000149231 CCDC82 HSPC048 coiled-coil domain containing 82 protein-coding 17166 chr2 223549325 223549450 + 0 NA Intergenic Intergenic 53112 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 5554 chr11 67346120 67346245 + 0 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) 7414 NM_001256870 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 12991 chr17 75046923 75047066 + 0 NA promoter-TSS (NM_015353) promoter-TSS (NM_015353) -15 NM_001003785 10476 Hs.514465 NM_006356 ENSG00000167863 ATP5H ATPQ ATP synthase, H+ transporting, mitochondrial Fo complex subunit D protein-coding 25266 chr6 144195819 144195923 + 0 NA Intergenic Intergenic 45354 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 20402 chr3 150763123 150763270 + 0 NA 5' UTR (NM_005067, exon 1 of 2) 5' UTR (NM_005067, exon 1 of 2) 280 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 18152 chr20 48945967 48946143 + 0 NA intron (NM_006420, intron 3 of 38) intron (NM_006420, intron 3 of 38) 24317 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 12347 chr17 34200044 34200195 + 0 NA Intergenic Intergenic -16487 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 29424 chr9 85332629 85332733 + 0 NA Intergenic LTR16E1|LTR|ERVL 409348 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 9873 chr15 36428405 36428496 + 0 NA Intergenic Intergenic -151153 NM_001321756 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 2845 chr1 226062021 226062153 + 0 NA promoter-TSS (NM_002107) promoter-TSS (NM_002107) -620 NM_002107 3020 Hs.533624 NM_002107 ENSG00000163041 H3F3A H3.3A|H3F3 H3 histone family member 3A protein-coding 30238 chr9 129685738 129685842 + 0 NA intron (NM_016307, intron 1 of 3) L2b|LINE|L2 20149 NM_016307 51450 Hs.660115 NM_016307 ENSG00000167157 PRRX2 PMX2|PRX2 paired related homeobox 2 protein-coding 22527 chr5 54013737 54013841 + 0 NA intron (NM_019087, intron 4 of 4) LTR8B|LTR|ERV1 61794 NR_039664 100616233 NR_039664 ENSG00000265421 MIR4459 - microRNA 4459 ncRNA 21181 chr4 11505573 11505752 + 0 NA Intergenic Intergenic -76749 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 10075 chr15 50354942 50354969 + 0 NA promoter-TSS (NR_026891) promoter-TSS (NR_026891) -76 NR_026891 55056 Hs.511316 NM_017976 ENSG00000104064 FLJ10038 - uncharacterized protein FLJ10038 ncRNA 26929 chr7 123534531 123534670 + 0 NA promoter-TSS (NM_178827) promoter-TSS (NM_178827) 64 NR_104245 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 22292 chr5 17316925 17317029 + 0 NA Intergenic Intergenic 70333 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 581 chr1 33219963 33220110 + 0 NA Intergenic Intergenic -36537 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 16434 chr2 147279120 147279168 + 0 NA Intergenic Intergenic -565373 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 4676 chr11 910909 910985 + 0 NA promoter-TSS (NM_001142674) promoter-TSS (NM_001142674) -73 NM_001142674 66005 Hs.144468 NM_023947 ENSG00000177830 CHID1 GL008|SI-CLP|SICLP chitinase domain containing 1 protein-coding 4200 chr10 99732063 99732245 + 0 NA promoter-TSS (NM_015960) promoter-TSS (NM_015960) -47 NM_015960 51076 Hs.16606 NM_015960 ENSG00000119929 CUTC CGI-32 cutC copper transporter protein-coding 17003 chr2 207847826 207847997 + 0 NA intron (NM_001080475, intron 7 of 7) intron (NM_001080475, intron 7 of 7) -78492 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 678 chr1 39394755 39394859 + 0 NA intron (NM_012090, intron 52 of 92) intron (NM_012090, intron 52 of 92) -14697 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 15950 chr2 89829173 89829323 + 0 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -191341 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 27827 chr8 52897540 52897691 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -42293 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 14215 chr19 16197856 16197890 + 0 NA promoter-TSS (NM_001130524) promoter-TSS (NM_001130524) 19 NM_032493 8907 Hs.71040 NM_032493 ENSG00000072958 AP1M1 AP47|CLAPM2|CLTNM|MU-1A adaptor related protein complex 1 mu 1 subunit protein-coding 1975 chr1 164696394 164696548 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 78170 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 24561 chr6 42316117 42316268 + 0 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) -98297 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 28388 chr8 105646208 105646312 + 0 NA intron (NM_012082, intron 5 of 7) MER72|LTR|ERV1 327341 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 11786 chr16 85351080 85351167 + 0 NA Intergenic MIR|SINE|MIR -44798 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 11443 chr16 58515409 58515506 + 0 NA promoter-TSS (NM_001160305) promoter-TSS (NM_001160305) -22 NR_134583 79918 Hs.731691 NM_024860 ENSG00000103037 SETD6 - SET domain containing 6 protein-coding 23817 chr5 179421338 179421442 + 0 NA Intergenic Intergenic -75960 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 29140 chr9 69379364 69379468 + 0 NA intron (NM_001347995, intron 6 of 10) intron (NM_001347995, intron 6 of 10) 50091 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 18965 chr22 41832799 41832887 + 0 NA promoter-TSS (NR_103834) promoter-TSS (NR_103834) -236 NR_103834 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 17927 chr20 35455027 35455131 + 0 NA promoter-TSS (NM_007186) promoter-TSS (NM_007186) -323 NM_007186 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1 centrosomal protein 250 protein-coding 2302 chr1 197321161 197321265 + 0 NA intron (NM_001257965, intron 3 of 14) intron (NM_001257965, intron 3 of 14) 53009 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs 1, cell polarity complex component protein-coding 26890 chr7 116954284 116954388 + 0 NA promoter-TSS (NR_002330) promoter-TSS (NR_002330) -2 NR_002330 93653 Hs.597516 NR_002330 ENSG00000227199 ST7-AS1 ST7AS1|ST7OT1 ST7 antisense RNA 1 ncRNA 20378 chr3 149657987 149658099 + 0 NA promoter-TSS (NM_001168280) promoter-TSS (NM_001168280) -18 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 2745 chr1 220776837 220776993 + 0 NA intron (NM_001331042, intron 4 of 4) intron (NM_001331042, intron 4 of 4) -9782 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 24169 chr6 20403418 20403569 + 0 NA promoter-TSS (NM_001243076) promoter-TSS (NM_001243076) -186 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 11332 chr16 50741897 50742029 + 0 NA promoter-TSS (NR_130462) promoter-TSS (NR_130462) -87 NM_001042355 1540 Hs.578973 NM_015247 ENSG00000083799 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 CYLD lysine 63 deubiquitinase protein-coding 26800 chr7 107580495 107580513 + 0 NA promoter-TSS (NM_001008405) promoter-TSS (NM_001008405) -255 NM_001008405 55973 Hs.303787 NM_018844 ENSG00000075790 BCAP29 BAP29 B-cell receptor associated protein 29 protein-coding 17342 chr2 237298805 237298821 + 0 NA Intergenic Intergenic 115394 NM_057167 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 2034 chr1 168301797 168301981 + 0 NA intron (NM_005149, intron 5 of 7) LTR23|LTR|ERV1 20849 NM_005149 9095 Hs.716656 NM_005149 ENSG00000143178 TBX19 TBS19|TPIT|dJ747L4.1 T-box 19 protein-coding 2400 chr1 202056866 202056975 + 0 NA Intergenic Intergenic 46358 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 13233 chr18 3794837 3794941 + 0 NA intron (NM_001003809, intron 2 of 9) intron (NM_001003809, intron 2 of 9) 50469 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 27044 chr7 134369073 134369190 + 0 NA Intergenic Intergenic -52056 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 3552 chr10 33010379 33010483 + 0 NA Intergenic Intergenic -52066 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 20828 chr3 184711998 184712182 + 0 NA promoter-TSS (NM_022149) promoter-TSS (NM_022149) -42 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 - MAGE family member F1 protein-coding 11975 chr17 4849236 4849241 + 0 NA intron (NM_170663, intron 1 of 31) intron (NM_170663, intron 1 of 31) 15898 NM_153827 50488 Hs.443417 NM_015716 ENSG00000141503 MINK1 B55|MAP4K6|MINK|YSK2|ZC3 misshapen like kinase 1 protein-coding 18869 chr22 37608387 37608541 + 0 NA promoter-TSS (NM_001172688) promoter-TSS (NM_001172688) -10 NM_013365 26088 Hs.499158 NM_013365 ENSG00000100083 GGA1 - golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 23273 chr5 136006918 136007022 + 0 NA Intergenic Intergenic -21925 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 21619 chr4 99815807 99815911 + 0 NA promoter-TSS (NM_014395) promoter-TSS (NM_014395) -965 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 2723 chr1 219518703 219518807 + 0 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 38569 NR_135822 102723886 Hs.525963 NR_135822 LOC102723886 - uncharacterized LOC102723886 ncRNA 8153 chr13 40639316 40639420 + 0 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) 27229 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 10344 chr15 68054210 68054358 + 0 NA promoter-TSS (NM_001320687) promoter-TSS (NM_001320687) 105 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 21301 chr4 39182268 39182376 + 0 NA promoter-TSS (NM_001317924) promoter-TSS (NM_001317924) -82 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 13628 chr18 57586611 57586758 + 0 NA promoter-TSS (NM_000140) promoter-TSS (NM_000140) 53 NM_001012515 2235 Hs.365365 NM_000140 ENSG00000066926 FECH EPP|FCE ferrochelatase protein-coding 775 chr1 43974782 43974912 + 0 NA 5' UTR (NM_004047, exon 1 of 8) 5' UTR (NM_004047, exon 1 of 8) 199 NM_001039457 533 Hs.596514 NM_004047 ENSG00000117410 ATP6V0B ATP6F|HATPL|VMA16 ATPase H+ transporting V0 subunit b protein-coding 18945 chr22 40951605 40951709 + 0 NA intron (NM_014248, intron 1 of 4) CpG 310 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 17074 chr2 215982593 215982719 + 0 NA intron (NM_018000, intron 2 of 4) intron (NM_018000, intron 2 of 4) 30967 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 5668 chr11 74546908 74547043 + 0 NA Intergenic LTR32|LTR|ERVL -45555 NR_046409 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 27424 chr8 13276584 13276767 + 0 NA promoter-TSS (NM_001316668) promoter-TSS (NM_001316668) -127 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 30279 chr9 131633580 131633755 + 0 NA intron (NM_005312, intron 5 of 23) intron (NM_005312, intron 5 of 23) 76175 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 21879 chr4 146945892 146945996 + 0 NA promoter-TSS (NM_001300761) promoter-TSS (NM_001300761) -58 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 14898 chr2 393797 394016 + 0 NA Intergenic Intergenic -105598 NM_001002919 285016 Hs.355207 NM_001002919 ENSG00000189292 FAM150B AUGA|PRO1097|RGPG542 family with sequence similarity 150 member B protein-coding 19346 chr3 36993373 36993435 + 0 NA promoter-TSS (NM_014805) promoter-TSS (NM_014805) 54 NM_001258271 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 29149 chr9 69898951 69899045 + 0 NA intron (NR_131756, intron 5 of 5) intron (NR_131756, intron 5 of 5) 78193 NM_001308084 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 30336 chr9 134380167 134380276 + 0 NA TTS (NR_039816) TTS (NR_039816) 810 NR_039816 100616236 NR_039816 ENSG00000263897 MIR4669 - microRNA 4669 ncRNA 4180 chr10 97889027 97889130 + 0 NA intron (NM_001206528, intron 11 of 14) intron (NM_001206528, intron 11 of 14) 38840 NM_001010917 401647 Hs.567524 NM_001010917 ENSG00000155265 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family member B protein-coding 26469 chr7 77540085 77540189 + 0 NA intron (NM_001131009, intron 1 of 16) intron (NM_001131009, intron 1 of 16) 2102 NM_001131008 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase, non-receptor type 12 protein-coding 16420 chr2 144703946 144704050 + 0 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 36031 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 4139 chr10 96502088 96502192 + 0 NA intron (NM_012465, intron 1 of 20) L2c|LINE|L2 11786 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 9012 chr14 52729847 52729951 + 0 NA promoter-TSS (NM_001130701) promoter-TSS (NM_001130701) -266 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 3030 chr1 236503183 236503335 + 0 NA Intergenic Intergenic -14955 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 78 chr1 6325650 6325801 + 0 NA intron (NM_007274, intron 5 of 8) intron (NM_007274, intron 5 of 8) 33219 NM_181866 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 12473 chr17 40915303 40915407 + 0 NA Intergenic Intergenic 22288 NM_001282433 25984 Hs.9029 NM_015515 ENSG00000108244 KRT23 CK23|HAIK1|K23 keratin 23 protein-coding 25996 chr7 32680755 32680939 + 0 NA intron (NR_036680, intron 2 of 16) MER41B|LTR|ERV1 38321 NR_036680 100129460 Hs.633705 NR_036680 DPY19L1P1 - DPY19L1 pseudogene 1 pseudo 5571 chr11 67805425 67805436 + 0 NA promoter-TSS (NR_024249) promoter-TSS (NR_024249) -94 NR_024249 645332 Hs.535094 NR_024249 ENSG00000160172 FAM86C2P - family with sequence similarity 86, member A pseudogene pseudo 6612 chr12 12267312 12267350 + 0 NA promoter-TSS (NM_002336) promoter-TSS (NM_002336) -454 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 14853 chr19 57633073 57633166 + 0 NA promoter-TSS (NR_049754) promoter-TSS (NR_049754) -48 NR_049753 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 15474 chr2 45851662 45851766 + 0 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 199810 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 13110 chr17 80856587 80856741 + 0 NA intron (NM_020761, intron 12 of 33) intron (NM_020761, intron 12 of 33) -51032 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 19156 chr3 11080658 11080800 + 0 NA Intergenic Intergenic -56364 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 26581 chr7 91940698 91940842 + 0 NA promoter-TSS (NM_147185) promoter-TSS (NM_147185) -105 NM_147185 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 7575 chr12 105330563 105330667 + 0 NA promoter-TSS (NM_001145199) promoter-TSS (NM_001145199) -21 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 2075 chr1 173123096 173123239 + 0 NA Intergenic Intergenic -72204 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL tumor necrosis factor superfamily member 18 protein-coding 9109 chr14 59188514 59188661 + 0 NA promoter-TSS (NM_001270520) promoter-TSS (NM_001270520) -76 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 1981 chr1 165116789 165116952 + 0 NA Intergenic Intergenic 239371 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 4582 chr10 125973434 125973538 + 0 NA promoter-TSS (NR_102707) promoter-TSS (NR_102707) -213 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 26974 chr7 128409943 128410018 + 0 NA promoter-TSS (NM_183243) promoter-TSS (NM_183243) 2 NM_001102605 3614 Hs.654401 NM_000883 ENSG00000106348 IMPDH1 IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608 inosine monophosphate dehydrogenase 1 protein-coding 12021 chr17 7060759 7060771 + 0 NA Intergenic Intergenic -16842 NM_153357 162515 Hs.336564 NM_153357 ENSG00000174326 SLC16A11 MCT11 solute carrier family 16 member 11 protein-coding 21983 chr4 165580457 165580561 + 0 NA Intergenic Intergenic -104130 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 24377 chr6 31796010 31796150 + 0 NA promoter-TSS (NM_006295).4 promoter-TSS (NM_006295).4 -145 NM_006295 7407 Hs.520026 NM_006295 ENSG00000204394 VARS G7A|VARS1|VARS2 valyl-tRNA synthetase protein-coding 20009 chr3 120623563 120623667 + 0 NA Intergenic LTR10F|LTR|ERV1 27334 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 29288 chr9 76353420 76353508 + 0 NA intron (NM_001190482, intron 35 of 36) intron (NM_001190482, intron 35 of 36) 41064 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 3559 chr10 33897373 33897498 + 0 NA Intergenic Intergenic -124755 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 19615 chr3 63387689 63387793 + 0 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) -55336 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 31007 chrX 119512567 119512721 + 0 NA Intergenic Intergenic -43524 NR_028443 100303728 Hs.714405 NR_028443 ENSG00000224281 SLC25A5-AS1 - SLC25A5 antisense RNA 1 ncRNA 26754 chr7 103347565 103347682 + 0 NA promoter-TSS (NM_001204453) promoter-TSS (NM_001204453) 99 NM_001204453 5701 Hs.437366 NM_002803 ENSG00000161057 PSMC2 MSS1|Nbla10058|S7 proteasome 26S subunit, ATPase 2 protein-coding 15681 chr2 65377741 65377787 + 0 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -10967 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 14703 chr19 49813572 49813710 + 0 NA promoter-TSS (NR_033269) promoter-TSS (NR_033269) -331 NM_001171937 80199 Hs.288800 NM_025129 ENSG00000010361 FUZ FY|NTD fuzzy planar cell polarity protein protein-coding 15886 chr2 84919934 84920088 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 14372 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 25608 chr7 5642013 5642048 + 0 NA intron (NM_207111, intron 14 of 16) AluSz|SINE|Alu 38431 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 27393 chr8 11769634 11769803 + 0 NA promoter-TSS (NM_001135746) promoter-TSS (NM_001135746) 55 NM_001135748 252969 Hs.293818 NM_145043 ENSG00000154328 NEIL2 NEH2|NEI2 nei like DNA glycosylase 2 protein-coding 8649 chr13 113584653 113584704 + 0 NA promoter-TSS (NR_026580) promoter-TSS (NR_026580) -10 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 13977 chr19 5470463 5470578 + 0 NA Intergenic L1ME2|LINE|L1 15105 NM_181710 148066 Hs.126496 NM_181710 ENSG00000105428 ZNRF4 RNF204|SPERIZIN|Ssrzf1|spzn zinc and ring finger 4 protein-coding 10949 chr16 4464447 4464477 + 0 NA intron (NM_020677, intron 4 of 5) intron (NM_020677, intron 4 of 5) 10188 NM_001305142 57407 Hs.288969 NM_020677 ENSG00000153406 NMRAL1 HSCARG|SDR48A1 NmrA like redox sensor 1 protein-coding 15881 chr2 84741507 84741611 + 0 NA intron (NM_001370, intron 62 of 76) L1M2a1|LINE|L1 139686 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 6220 chr11 121452244 121452333 + 0 NA promoter-TSS (NM_003105) promoter-TSS (NM_003105) 85 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 9973 chr15 42548750 42548875 + 0 NA promoter-TSS (NM_001323632) promoter-TSS (NM_001323632) -1 NM_001323629 55142 Hs.14347 NM_018097 ENSG00000137814 HAUS2 C15orf25|CEP27|HsT17025 HAUS augmin like complex subunit 2 protein-coding 9930 chr15 40565025 40565143 + 0 NA promoter-TSS (NM_001289132) promoter-TSS (NM_001289132) -27 NM_052849 90416 Hs.654661 NM_052849 ENSG00000128891 C15orf57 CCDC32 chromosome 15 open reading frame 57 protein-coding 24795 chr6 73695835 73695939 + 0 NA promoter-TSS (NM_001159587) promoter-TSS (NM_001159587) -198 NM_001159587 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 20947 chr3 190432429 190432500 + 0 NA intron (NM_207316, intron 4 of 4) MIR|SINE|MIR 17412 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 8519 chr13 102117288 102117392 + 0 NA intron (NM_001321937, intron 1 of 3) intron (NM_001321937, intron 1 of 3) -71336 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 13684 chr18 61908807 61908911 + 0 NA Intergenic MER5B|DNA|hAT-Charlie -15788 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 2589 chr1 210251449 210251553 + 0 NA Intergenic Intergenic -17380 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 10923 chr16 3283271 3283412 + 0 NA promoter-TSS (NM_005741) promoter-TSS (NM_005741) -146 NM_005741 10127 Hs.611475 NM_005741 ENSG00000006194 ZNF263 FPM315|ZKSCAN12|ZSCAN44 zinc finger protein 263 protein-coding 2814 chr1 224454810 224454845 + 0 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 19932 NM_001322303 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 7603 chr12 107318322 107318485 + 0 NA promoter-TSS (NM_001018072) promoter-TSS (NM_001018072) -17 NM_001018072 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 24631 chr6 46652822 46652975 + 0 NA promoter-TSS (NM_001278738) promoter-TSS (NM_001278738) -17 NM_004277 9481 Hs.40510 NM_004277 ENSG00000153291 SLC25A27 UCP4 solute carrier family 25 member 27 protein-coding 23149 chr5 126961883 126961924 + 0 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 68905 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 14859 chr19 58002755 58002810 + 0 NA promoter-TSS (NR_036508) promoter-TSS (NR_036508) 45 NM_001348022 80095 Hs.654967 NM_025027 ENSG00000166704 ZNF606 ZNF328 zinc finger protein 606 protein-coding 28096 chr8 81097314 81097426 + 0 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 14698 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 15486 chr2 46542371 46542435 + 0 NA promoter-TSS (NM_012249) promoter-TSS (NM_012249) 154 NM_001318063 90423 Hs.659656 NM_080653 ENSG00000250565 ATP6V1E2 ATP6E1|ATP6EL2|ATP6V1EL2|VMA4 ATPase H+ transporting V1 subunit E2 protein-coding 20553 chr3 160677021 160677125 + 0 NA promoter-TSS (NM_025047) promoter-TSS (NM_025047) -87 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 5935 chr11 97361994 97362086 + 0 NA Intergenic Intergenic 853615 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LOC105369443 - uncharacterized LOC105369443 ncRNA 22325 chr5 26942624 26942728 + 0 NA intron (NM_016279, intron 2 of 11) LTR108d_Mam|LTR|ERVL 95906 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 16887 chr2 197804454 197804583 + 0 NA promoter-TSS (NM_006226) promoter-TSS (NM_006226) -184 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 protein-coding 21098 chr4 674216 674369 + 0 NA promoter-TSS (NM_007100) promoter-TSS (NM_007100) 46 NR_033743 521 Hs.85539 NM_007100 ENSG00000169020 ATP5I ATP5K ATP synthase, H+ transporting, mitochondrial Fo complex subunit E protein-coding 588 chr1 33431095 33431248 + 0 NA Intergenic CpG -41460 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 16427 chr2 145984646 145984750 + 0 NA Intergenic LTR104_Mam|LTR|Gypsy -602359 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 1684 chr1 150561405 150561550 + 0 NA TTS (NM_001288608) TTS (NM_001288608) 9548 NR_036211 100422997 NR_036211 ENSG00000264553 MIR4257 - microRNA 4257 ncRNA 756 chr1 43348899 43349053 + 0 NA exon (NM_005373, exon 9 of 12) exon (NM_005373, exon 9 of 12) -9979 NM_001255 991 Hs.524947 NM_001255 ENSG00000117399 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding 5097 chr11 32303068 32303172 + 0 NA Intergenic Intergenic 127697 NM_001198552 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 25710 chr7 13920272 13920429 + 0 NA intron (NM_001163150, intron 5 of 9) intron (NM_001163150, intron 5 of 9) 66164 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 15581 chr2 55857183 55857287 + 0 NA Intergenic L2b|LINE|L2 66928 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin like extracellular matrix protein 1 protein-coding 4422 chr10 116748205 116748309 + 0 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) -5683 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 9543 chr14 90419343 90419422 + 0 NA Intergenic Intergenic 22399 NM_006888 801 Hs.282410 NM_006888 ENSG00000198668 CALM1 CALML2|CAMI|CPVT4|DD132|LQT14|PHKD|caM calmodulin 1 protein-coding 8851 chr14 34875322 34875381 + 0 NA 5' UTR (NM_013448, exon 1 of 27) 5' UTR (NM_013448, exon 1 of 27) 296 NM_182648 11177 Hs.509140 NM_013448 ENSG00000198604 BAZ1A ACF1|WALp1|WCRF180|hACF1 bromodomain adjacent to zinc finger domain 1A protein-coding 22490 chr5 50440710 50440864 + 0 NA intron (NM_198449, intron 1 of 8) CpG 613 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 17913 chr20 34955791 34955920 + 0 NA promoter-TSS (NM_000178) promoter-TSS (NM_000178) 20 NM_020884 57644 Hs.414122 NM_020884 ENSG00000078814 MYH7B MHC14|MYH14 myosin heavy chain 7B protein-coding 10158 chr15 56887127 56887262 + 0 NA non-coding (NR_015419, exon 4 of 4) non-coding (NR_015419, exon 4 of 4) -30896 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20 transcription factor 12 protein-coding 16102 chr2 108958174 108958310 + 0 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 31130 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 29703 chr9 100429378 100429561 + 0 NA promoter-TSS (NM_001198806) promoter-TSS (NM_001198806) -45 NM_001198806 91283 Hs.530272 NM_080655 ENSG00000066697 MSANTD3 C9orf30|L8 Myb/SANT DNA binding domain containing 3 protein-coding 12258 chr17 28416944 28417050 + 0 NA Intergenic Intergenic -10785 NM_001242366 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 4649 chr10 133523808 133523949 + 0 NA Intergenic Intergenic -3485 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 8073 chr13 31846550 31846701 + 0 NA promoter-TSS (NR_027062) promoter-TSS (NR_027062) -158 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 23392 chr5 142215912 142216126 + 0 NA Intergenic Intergenic 102303 NR_131221 100642175 Hs.684549 NR_131221 ENSG00000281881 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 23626 chr5 159571967 159572071 + 0 NA Intergenic L1M4|LINE|L1 -105743 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 26937 chr7 123770566 123770670 + 0 NA Intergenic L2c|LINE|L2 20093 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 11112 chr16 21300637 21300778 + 0 NA promoter-TSS (NR_026675) promoter-TSS (NR_026675) -142 NR_026675 400508 Hs.578949 NM_001101368 CRYM-AS1 NCRNA00169 CRYM antisense RNA 1 ncRNA 26496 chr7 80942305 80942459 + 0 NA Intergenic Intergenic -23031 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 14422 chr19 38647427 38647503 + 0 NA promoter-TSS (NM_004924) promoter-TSS (NM_004924) -151 NM_001322033 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 26 chr1 1627351 1627505 + 0 NA exon (NM_001170686, exon 12 of 20) exon (NM_001170686, exon 12 of 20) -4753 NM_006983 8510 Hs.192316 NM_006983 ENSG00000189409 MMP23B MIFR|MIFR-1|MMP22|MMP23A matrix metallopeptidase 23B protein-coding 7299 chr12 77151113 77151217 + 0 NA Intergenic Intergenic -85585 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 26908 chr7 120987791 120987895 + 0 NA promoter-TSS (NM_024913) promoter-TSS (NM_024913) -854 NM_024913 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 2250 chr1 187010723 187010827 + 0 NA Intergenic MIR|SINE|MIR -82067 NR_126347 104169671 NR_126347 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 526 chr1 31549001 31549155 + 0 NA Intergenic Intergenic -27407 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 18173 chr20 49970029 49970133 + 0 NA Intergenic Intergenic -12895 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 19415 chr3 42590727 42590867 + 0 NA intron (NM_016305, intron 1 of 3) CpG -8769 NM_004206 9117 Hs.445892 NM_004206 ENSG00000093183 SEC22C SEC22L3 SEC22 homolog C, vesicle trafficking protein protein-coding 17292 chr2 232988602 232988729 + 0 NA intron (NM_019850, intron 1 of 14) L1ME4b|LINE|L1 -23949 NR_136325 101928881 Hs.570311 NR_136325 ENSG00000222001 LOC101928881 - uncharacterized LOC101928881 ncRNA 3500 chr10 29735869 29735973 + 0 NA promoter-TSS (NM_001323600) promoter-TSS (NM_001323600) 3 NM_001323600 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 26520 chr7 84529535 84529665 + 0 NA Intergenic Intergenic -2876 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 20821 chr3 184448845 184449013 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 47392 NM_001322103 105374250 Hs.129464 NM_001322103 LINC02054 - long intergenic non-protein coding RNA 2054 protein-coding 30349 chr9 136052181 136052285 + 0 NA intron (NM_144653, intron 1 of 5) intron (NM_144653, intron 1 of 5) 43052 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 6568 chr12 8390606 8390751 + 0 NA promoter-TSS (NR_024420) promoter-TSS (NR_024420) 74 NR_024420 389634 Hs.434403 NM_001012988 ENSG00000226091 LINC00937 - long intergenic non-protein coding RNA 937 ncRNA 12954 chr17 72661560 72661769 + 0 NA intron (NM_139177, intron 7 of 9) intron (NM_139177, intron 7 of 9) -21192 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 20897 chr3 188547191 188547280 + 0 NA intron (NM_001167671, intron 5 of 10) intron (NM_001167671, intron 5 of 10) 21431 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 14608 chr19 47079498 47079605 + 0 NA intron (NM_015168, intron 11 of 14) intron (NM_015168, intron 11 of 14) -30927 NM_017854 54958 Hs.105606 NM_017854 ENSG00000130748 TMEM160 - transmembrane protein 160 protein-coding 16171 chr2 113198902 113198906 + 0 NA intron (NM_012455, intron 15 of 16) CpG 24921 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 23193 chr5 131323042 131323146 + 0 NA intron (NM_020240, intron 2 of 5) AluJo|SINE|Alu 59085 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 232 chr1 16396691 16396795 + 0 NA non-coding (NR_073500, exon 2 of 2) non-coding (NR_073500, exon 2 of 2) 29713 NR_073500 26099 Hs.252967 NM_001114600 ENSG00000055070 SZRD1 C1orf144 SUZ RNA binding domain containing 1 protein-coding 30728 chrX 51893419 51893472 + 0 NA promoter-TSS (NM_006986) promoter-TSS (NM_006986) -157 NM_001005333 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 26606 chr7 93350436 93350614 + 0 NA intron (NM_017667, intron 25 of 27) L2a|LINE|L2 118185 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50, EARP/GARPII complex subunit protein-coding 10106 chr15 52019894 52020030 + 0 NA intron (NM_002748, intron 1 of 5) CpG 748 NM_002748 5597 Hs.411847 NM_002748 ENSG00000069956 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 23991 chr6 8102509 8102671 + 0 NA promoter-TSS (NM_001135650) promoter-TSS (NM_001135650) 5 NM_001135650 9521 Hs.602353 NM_004280 ENSG00000124802 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 6207 chr11 120169299 120169403 + 0 NA Intergenic CpG -31196 NM_012101 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 3054 chr1 238200334 238200438 + 0 NA Intergenic AluSx|SINE|Alu 285631 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINKA long intergenic non-protein coding RNA 1139 ncRNA 3458 chr10 25062557 25062702 + 0 NA promoter-TSS (NM_001270383) promoter-TSS (NM_001270383) -350 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 22987 chr5 107739775 107739879 + 0 NA Intergenic Intergenic -68932 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 1182 chr1 84365761 84365927 + 0 NA intron (NR_003927, intron 5 of 6) Tigger15a|DNA|TcMar-Tigger 18957 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 6008 chr11 106656790 106656894 + 0 NA Intergenic Tigger4|DNA|TcMar-Tigger 361603 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 1447 chr1 108118605 108118758 + 0 NA Intergenic Intergenic 74128 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1 solute carrier family 25 member 24 protein-coding 7963 chr13 23579290 23579437 + 0 NA promoter-TSS (NM_018647) promoter-TSS (NM_018647) 3 NM_001204458 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 27489 chr8 19817277 19817381 + 0 NA promoter-TSS (NM_018142) promoter-TSS (NM_018142) -78 NM_018142 55174 Hs.512627 NM_018142 ENSG00000104613 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 1510 chr1 111449221 111449380 + 0 NA promoter-TSS (NM_001317062) promoter-TSS (NM_001317062) 8 NM_024102 79084 Hs.204773 NM_024102 ENSG00000116455 WDR77 HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50 WD repeat domain 77 protein-coding 7595 chr12 107027671 107027833 + 0 NA intron (NM_004075, intron 1 of 12) intron (NM_004075, intron 1 of 12) -40586 NM_001033050 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 16487 chr2 156021441 156021545 + 0 NA non-coding (NR_110250, exon 4 of 4) non-coding (NR_110250, exon 4 of 4) 233438 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 10968 chr16 4944850 4944997 + 0 NA Intergenic Intergenic -7788 NM_002705 5493 Hs.192233 NM_002705 ENSG00000118898 PPL - periplakin protein-coding 12125 chr17 15260798 15260902 + 0 NA promoter-TSS (NM_153322) promoter-TSS (NM_153322) -6 NM_153322 5376 Hs.372031 NM_000304 ENSG00000109099 PMP22 CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110 peripheral myelin protein 22 protein-coding 18639 chr22 19963120 19963228 + 0 NA promoter-TSS (NR_039918) promoter-TSS (NR_039918) -579 NR_039918 100616414 NR_039918 ENSG00000093010 MIR4761 - microRNA 4761 ncRNA 16580 chr2 163778414 163778518 + 0 NA Intergenic L2a|LINE|L2 -42459 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 3641 chr10 46030566 46030764 + 0 NA promoter-TSS (NM_001145261) promoter-TSS (NM_001145261) 49 NM_001145263 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 28329 chr8 101158958 101159115 + 0 NA Intergenic L2c|LINE|L2 46696 NM_001042510 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 3585 chr10 36534771 36534920 + 0 NA Intergenic LTR102_Mam|LTR|ERVL -591012 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 25305 chr6 148856384 148856496 + 0 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 108244 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 27941 chr8 63220434 63220568 + 0 NA Intergenic Intergenic 51498 NM_001277818 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 18663 chr22 21002075 21002227 + 0 NA promoter-TSS (NM_030573) promoter-TSS (NM_030573) -36 NM_030573 80764 Hs.512756 NM_030573 ENSG00000184436 THAP7 - THAP domain containing 7 protein-coding 30529 chrX 16786179 16786358 + 0 NA promoter-TSS (NM_001168683) promoter-TSS (NM_001168683) -164 NM_001168683 55787 Hs.555961 NM_018360 ENSG00000086712 TXLNG CXorf15|ELRG|FIAT|LSR5|TXLNGX taxilin gamma protein-coding 26353 chr7 66628845 66628932 + 0 NA promoter-TSS (NM_001167961) promoter-TSS (NM_001167961) 7 NM_153033 154881 Hs.546627 NM_153033 ENSG00000243335 KCTD7 CLN14|EPM3 potassium channel tetramerization domain containing 7 protein-coding 4128 chr10 95814170 95814235 + 0 NA intron (NM_001312654, intron 2 of 9) intron (NM_001312654, intron 2 of 9) 58286 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 29377 chr9 83041859 83041963 + 0 NA intron (NM_152573, intron 1 of 16) intron (NM_152573, intron 1 of 16) 21217 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 20628 chr3 170330426 170330574 + 0 NA Intergenic Intergenic -27185 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 5981 chr11 103092112 103092249 + 0 NA promoter-TSS (NM_001318739) promoter-TSS (NM_001318739) 35 NM_032299 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 14255 chr19 18000985 18001121 + 0 NA promoter-TSS (NM_001025604) promoter-TSS (NM_001025604) -79 NM_001025604 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 14675 chr19 49085248 49085383 + 0 NA 5' UTR (NM_003089, exon 1 of 10) 5' UTR (NM_003089, exon 1 of 10) 175 NM_003089 6625 Hs.467097 NM_003089 ENSG00000104852 SNRNP70 RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP small nuclear ribonucleoprotein U1 subunit 70 protein-coding 30677 chrX 47659252 47659361 + 0 NA promoter-TSS (NR_045560) promoter-TSS (NR_045560) -126 NM_004182 8409 Hs.172791 NM_004182 ENSG00000126756 UXT ART-27|STAP1 ubiquitously expressed prefoldin like chaperone protein-coding 31116 chrX 140180736 140180811 + 0 NA Intergenic L1MB7|LINE|L1 89106 NM_001271560 389895 Hs.127679 NM_001271560 LOC389895 - chromosome 16 open reading frame 72-like protein-coding 4243 chr10 102065301 102065462 + 0 NA promoter-TSS (NM_024747) promoter-TSS (NM_024747) 14 NM_024747 79803 Hs.125133 NM_024747 ENSG00000166189 HPS6 BLOC2S3 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 protein-coding 10659 chr15 89167758 89167862 + 0 NA intron (NM_152924, intron 5 of 10) intron (NM_152924, intron 5 of 10) 53881 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 13534 chr18 48833024 48833103 + 0 NA intron (NM_014772, intron 10 of 11) intron (NM_014772, intron 10 of 11) 109744 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 20122 chr3 129245864 129245939 + 0 NA Intergenic Intergenic -3709 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 16472 chr2 152175604 152175634 + 0 NA exon (NM_005843, exon 1 of 14) exon (NM_005843, exon 1 of 14) 373 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 10665 chr15 89396079 89396183 + 0 NA non-coding (NR_133001, exon 7 of 7) non-coding (NR_133001, exon 7 of 7) 18089 NR_015411 254559 Hs.136313 NR_015411 ENSG00000255571 MIR9-3HG LINC00925 MIR9-3 host gene ncRNA 13353 chr18 26547875 26548013 + 0 NA exon (NM_001142730, exon 1 of 5) exon (NM_001142730, exon 1 of 5) 592 NM_001142730 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 2763 chr1 221947900 221948032 + 0 NA Intergenic LTR7C|LTR|ERV1 -107300 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 1141 chr1 77682583 77682715 + 0 NA promoter-TSS (NM_015534) promoter-TSS (NM_015534) 9 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 15607 chr2 58762217 58762416 + 0 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 241563 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 984 chr1 61424546 61424635 + 0 NA intron (NM_005595, intron 9 of 9) intron (NM_005595, intron 9 of 9) -171072 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 22976 chr5 106731062 106731149 + 0 NA Intergenic L1PREC2|LINE|L1 279909 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 23700 chr5 170254271 170254311 + 0 NA intron (NM_005565, intron 17 of 20) intron (NM_005565, intron 17 of 20) 21284 NM_001305393 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 16302 chr2 128728029 128728133 + 0 NA Intergenic MER65B|LTR|ERV1 -136519 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 24055 chr6 12472831 12472856 + 0 NA Intergenic Intergenic 182547 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 13117 chr17 81095012 81095147 + 0 NA intron (NM_006340, intron 6 of 14) intron (NM_006340, intron 6 of 14) 30294 NR_030394 724027 NR_030394 ENSG00000207736 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 31020 chrX 120316787 120316787 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -5251 NM_001104544 55026 Hs.437563 NM_017938 ENSG00000125355 TMEM255A FAM70A transmembrane protein 255A protein-coding 27582 chr8 26451241 26451370 + 0 NA Intergenic Intergenic 60915 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 18498 chr21 34073550 34073654 + 0 NA promoter-TSS (NM_006933) promoter-TSS (NM_006933) 79 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 14887 chr1_KI270712v1_random 59219 59323 + 0 NA NA (TGGCTGGCT)n|Simple_repeat|Simple_repeat NA NA 19388 chr3 40309550 40309732 + 0 NA promoter-TSS (NR_033965) promoter-TSS (NR_033965) -41 NM_005875 10289 Hs.315230 NM_005875 ENSG00000114784 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 5238 chr11 46846234 46846394 + 0 NA promoter-TSS (NM_001008938) promoter-TSS (NM_001008938) -6 NM_001008938 9793 Hs.201253 NM_014756 ENSG00000175216 CKAP5 CHTOG|MSPS|TOG|TOGp|ch-TOG cytoskeleton associated protein 5 protein-coding 17057 chr2 214019326 214019473 + 0 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) 261332 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 6335 chr11 129315831 129315935 + 0 NA Intergenic Intergenic -60103 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 12679 chr17 50560567 50560709 + 0 NA promoter-TSS (NM_198387) promoter-TSS (NM_198387) -430 NM_001256326 8913 Hs.591169 NM_018896 ENSG00000006283 CACNA1G Ca(V)T.1|Cav3.1|NBR13|SCA42 calcium voltage-gated channel subunit alpha1 G protein-coding 18375 chr20 62088567 62088780 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -22863 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 11326 chr16 50245667 50245747 + 0 NA Intergenic Intergenic -20833 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 30627 chrX 40912662 40912770 + 0 NA Intergenic Intergenic -79520 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 4115 chr10 95273711 95273818 + 0 NA intron (NM_020992, intron 1 of 6) L4_C_Mam|LINE|RTE-X 17384 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 1313 chr1 92961313 92961394 + 0 NA intron (NM_001252270, intron 1 of 3) CpG 169 NM_001252269 388650 Hs.180946 NM_001006605 ENSG00000154511 FAM69A - family with sequence similarity 69 member A protein-coding 13779 chr18 74496090 74496194 + 0 NA promoter-TSS (NM_018235) promoter-TSS (NM_018235) -123 NM_018235 55748 Hs.149185 NM_018235 ENSG00000133313 CNDP2 CN2|CPGL|HEL-S-13|HsT2298|PEPA CNDP dipeptidase 2 (metallopeptidase M20 family) protein-coding 16356 chr2 134460705 134460801 + 0 NA intron (NM_030923, intron 6 of 7) intron (NM_030923, intron 6 of 7) 206494 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 25091 chr6 123091319 123091463 + 0 NA Intergenic Intergenic 95420 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 3521 chr10 31099784 31099930 + 0 NA Intergenic Intergenic -67920 NM_001143767 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 6048 chr11 110296910 110296976 + 0 NA promoter-TSS (NM_002906) promoter-TSS (NM_002906) -231 NM_002906 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 27636 chr8 29665219 29665373 + 0 NA Intergenic Intergenic 82813 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 12875 chr17 66467151 66467301 + 0 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -50372 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 19155 chr3 10804359 10804438 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR -11802 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 1112 chr1 70354702 70354822 + 0 NA promoter-TSS (NM_030816) promoter-TSS (NM_030816) -28 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 30523 chrX 15737967 15738071 + 0 NA promoter-TSS (NM_007220) promoter-TSS (NM_007220) -270 NM_007220 11238 Hs.653287 NM_007220 ENSG00000169239 CA5B CA-VB carbonic anhydrase 5B protein-coding 23365 chr5 141475835 141475957 + 0 NA promoter-TSS (NM_002588) promoter-TSS (NM_002588) -106 NM_002588 5098 Hs.368160 NM_002588 ENSG00000240184 PCDHGC3 PC43|PCDH-GAMMA-C3|PCDH2 protocadherin gamma subfamily C, 3 protein-coding 26258 chr7 50418173 50418298 + 0 NA Intergenic Intergenic 32171 NM_001287496 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 23022 chr5 112420364 112420492 + 0 NA non-coding (NR_027706, exon 1 of 1) non-coding (NR_027706, exon 1 of 1) 845 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-AS2 - EPB41L4A antisense RNA 2 (head to head) ncRNA 461 chr1 27568403 27568583 + 0 NA intron (NM_001029882, intron 1 of 6) CpG 35001 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 15862 chr2 76998802 76998977 + 0 NA intron (NR_110284, intron 3 of 3) intron (NR_110284, intron 3 of 3) 12924 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 13755 chr18 70286610 70286709 + 0 NA Intergenic Intergenic -2242 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 30454 chrX 4379227 4379327 + 0 NA Intergenic LTR8|LTR|ERV1 254295 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 3451 chr10 24902040 24902088 + 0 NA intron (NM_020200, intron 3 of 8) intron (NM_020200, intron 3 of 8) 50580 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 1358 chr1 95234133 95234251 + 0 NA promoter-TSS (NR_125948) promoter-TSS (NR_125948) 37 NM_001278247 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 6345 chr11 129705381 129705485 + 0 NA Intergenic Intergenic -88164 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 31002 chrX 119374901 119375005 + 0 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -24342 NM_145305 203427 Hs.496658 NM_145305 ENSG00000077713 SLC25A43 - solute carrier family 25 member 43 protein-coding 28601 chr8 125558381 125558485 + 0 NA Intergenic Intergenic 126224 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 30760 chrX 55161081 55161221 + 0 NA promoter-TSS (NM_001166699) promoter-TSS (NM_001166699) -17 NM_001166702 90736 Hs.415414 NM_138362 ENSG00000182518 FAM104B CXorf44 family with sequence similarity 104 member B protein-coding 25934 chr7 27740044 27740191 + 0 NA promoter-TSS (NM_006024) promoter-TSS (NM_006024) 22 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 8701 chr14 22604980 22605084 + 0 NA intron (NM_022060, intron 4 of 6) intron (NM_022060, intron 4 of 6) 6794 NM_022060 63874 Hs.445665 NM_022060 ENSG00000100439 ABHD4 ABH4 abhydrolase domain containing 4 protein-coding 10111 chr15 52095857 52095958 + 0 NA Intergenic L1MB7|LINE|L1 16868 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 11531 chr16 68539169 68539273 + 0 NA promoter-TSS (NM_001305203) promoter-TSS (NM_001305203) 8 NR_130977 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 27101 chr7 139431185 139431284 + 0 NA Intergenic L1ME1|LINE|L1 -3708 NR_033999 100129148 Hs.744449 NR_033999 LOC100129148 - uncharacterized LOC100129148 ncRNA 19796 chr3 104952646 104952750 + 0 NA Intergenic Intergenic -414015 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 18632 chr22 19479817 19479921 + 0 NA promoter-TSS (NM_005659) promoter-TSS (NM_005659) 43 NM_001178011 8318 Hs.474217 NM_003504 ENSG00000093009 CDC45 CDC45L|CDC45L2|MGORS7|PORC-PI-1 cell division cycle 45 protein-coding 3607 chr10 42866803 42866907 + 0 NA Intergenic CpG -4666 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LOC101929445 - uncharacterized LOC101929445 ncRNA 20645 chr3 171460815 171460968 + 0 NA promoter-TSS (NM_015028) promoter-TSS (NM_015028) -483 NM_001161562 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 3648 chr10 47406412 47406560 + 0 NA promoter-TSS (NR_134500) promoter-TSS (NR_134500) -679 NR_134500 107001062 Hs.576719 NR_134500 LOC107001062 - uncharacterized LOC107001062 ncRNA 8029 chr13 28139360 28139441 + 0 NA promoter-TSS (NR_029383) promoter-TSS (NR_029383) -226 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 14430 chr19 38850426 38850582 + 0 NA promoter-TSS (NM_001533) promoter-TSS (NM_001533) -527 NM_001533 3191 Hs.644906 NM_001533 ENSG00000104824 HNRNPL HNRPL|P/OKcl.14|hnRNP-L heterogeneous nuclear ribonucleoprotein L protein-coding 3015 chr1 235404417 235404461 + 0 NA intron (NM_003193, intron 3 of 16) Tigger3b|DNA|TcMar-Tigger 37079 NM_001079515 6905 Hs.744998 NM_003193 ENSG00000116957 TBCE HRD|KCS|KCS1|PEAMO|pac2 tubulin folding cofactor E protein-coding 21136 chr4 4541977 4542118 + 0 NA promoter-TSS (NR_037888) promoter-TSS (NR_037888) 19 NM_001346281 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 18456 chr21 29259100 29259204 + 0 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -39643 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 1950 chr1 162366794 162366938 + 0 NA intron (NM_001126060, intron 1 of 1) intron (NM_001126060, intron 1 of 1) 3883 NM_001126060 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 6987 chr12 50167417 50167522 + 0 NA promoter-TSS (NM_001281731) promoter-TSS (NM_001281731) 64 NM_001331072 91012 Hs.270525 NM_147190 ENSG00000139624 CERS5 LASS5|Trh4 ceramide synthase 5 protein-coding 12406 chr17 37489646 37489750 + 0 NA promoter-TSS (NM_007026) promoter-TSS (NM_007026) -147 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 5578 chr11 68271946 68272028 + 0 NA promoter-TSS (NM_022338) promoter-TSS (NM_022338) 14 NM_001300913 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 15411 chr2 40700419 40700523 + 0 NA Intergenic L2a|LINE|L2 -188036 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 11315 chr16 49023249 49023353 + 0 NA Intergenic Intergenic 258530 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 29219 chr9 72540674 72540799 + 0 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 18935 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 25493 chr6 169340492 169340648 + 0 NA Intergenic Intergenic -86456 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 28479 chr8 118016441 118016572 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 95313 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 26328 chr7 62454696 62454844 + 0 NA Intergenic Intergenic 849286 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 19709 chr3 94936373 94936477 + 0 NA Intergenic Intergenic -1838 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 8268 chr13 49793082 49793094 + 0 NA promoter-TSS (NM_002267) promoter-TSS (NM_002267) -167 NM_002267 3839 Hs.527919 NM_002267 ENSG00000102753 KPNA3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 karyopherin subunit alpha 3 protein-coding 1890 chr1 159161086 159161190 + 0 NA Intergenic Intergenic -10426 NM_021189 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 8486 chr13 98577538 98577606 + 0 NA promoter-TSS (NM_001286649) promoter-TSS (NM_001286649) -421 NM_001032296 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 17177 chr2 223945343 223945483 + 0 NA promoter-TSS (NM_020830) promoter-TSS (NM_020830) -26 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 6281 chr11 125111666 125111819 + 0 NA promoter-TSS (NM_001080546) promoter-TSS (NM_001080546) 21 NM_001258240 219854 Hs.7626 NM_001080546 ENSG00000150433 TMEM218 - transmembrane protein 218 protein-coding 8723 chr14 23095163 23095267 + 0 NA promoter-TSS (NM_017924) promoter-TSS (NM_017924) -259 NM_017924 55017 Hs.525238 NM_017924 ENSG00000179933 C14orf119 - chromosome 14 open reading frame 119 protein-coding 29788 chr9 107755373 107755530 + 0 NA Intergenic Charlie13a|DNA|hAT-Charlie -265731 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 28535 chr8 121240669 121240773 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -398625 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 15294 chr2 30231495 30231599 + 0 NA promoter-TSS (NM_030915) promoter-TSS (NM_030915) 16 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - limb bud and heart development protein-coding 10193 chr15 59256598 59256725 + 0 NA intron (NM_004998, intron 3 of 27) intron (NM_004998, intron 3 of 27) 49845 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 26388 chr7 73308766 73308936 + 0 NA promoter-TSS (NM_001168347) promoter-TSS (NM_001168347) 16 NM_018044 55695 Hs.510927 NM_018044 ENSG00000130305 NSUN5 NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1) NOP2/Sun RNA methyltransferase family member 5 protein-coding 26277 chr7 51139881 51140022 + 0 NA intron (NM_001287438, intron 5 of 7) intron (NM_001287438, intron 5 of 7) 176910 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 22610 chr5 61332085 61332232 + 0 NA promoter-TSS (NM_020928) promoter-TSS (NM_020928) -115 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 15954 chr2 95159466 95159519 + 0 NA promoter-TSS (NM_001318005) promoter-TSS (NM_001318005) 93 NM_032788 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 31218 chrY 11721921 11722075 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 699592 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 988 chr1 61585838 61585942 + 0 NA Intergenic Intergenic -68352 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 28435 chr8 110685084 110685188 + 0 NA Intergenic Intergenic 342297 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 29005 chr9 26956296 26956432 + 0 NA promoter-TSS (NM_001099224) promoter-TSS (NM_001099224) -9 NM_001099224 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 23896 chr6 3061865 3061887 + 0 NA Intergenic L1MB8|LINE|L1 -2012 NM_003804 8737 Hs.519842 NM_003804 ENSG00000137275 RIPK1 RIP|RIP-1|RIP1 receptor interacting serine/threonine kinase 1 protein-coding 23207 chr5 132369589 132369716 + 0 NA promoter-TSS (NM_001308122) promoter-TSS (NM_001308122) -57 NM_001308122 6584 Hs.443572 NM_003060 ENSG00000197375 SLC22A5 CDSP|OCTN2 solute carrier family 22 member 5 protein-coding 1454 chr1 108692202 108692354 + 0 NA promoter-TSS (NM_018061) promoter-TSS (NM_018061) -32 NM_018061 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 13401 chr18 31649054 31649158 + 0 NA intron (NM_004775, intron 3 of 8) intron (NM_004775, intron 3 of 8) 35617 NM_001330570 9331 Hs.591063 NM_004775 ENSG00000118276 B4GALT6 B4Gal-T6|beta4Gal-T6 beta-1,4-galactosyltransferase 6 protein-coding 8528 chr13 102773736 102773806 + 0 NA promoter-TSS (NM_001286775) promoter-TSS (NM_001286775) 50 NM_001286775 93081 Hs.398111 NM_138779 ENSG00000151287 TEX30 C13orf27 testis expressed 30 protein-coding 27877 chr8 56320654 56320776 + 0 NA promoter-TSS (NM_138969) promoter-TSS (NM_138969) 61 NM_001318049 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 6969 chr12 49264947 49265086 + 0 NA promoter-TSS (NM_032704) promoter-TSS (NM_032704) 17 NM_032704 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 18721 chr22 26471622 26471805 + 0 NA intron (NR_073135, intron 6 of 13) intron (NR_073135, intron 6 of 13) 7968 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 14811 chr19 55339503 55339556 + 0 NA promoter-TSS (NM_032701) promoter-TSS (NM_032701) -324 NM_032701 84787 Hs.590982 NM_032701 ENSG00000133247 KMT5C SUV420H2|Suv4-20h2 lysine methyltransferase 5C protein-coding 25125 chr6 127026309 127026413 + 0 NA Intergenic Intergenic -92542 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 24460 chr6 36423316 36423441 + 0 NA intron (NM_152990, intron 3 of 4) CpG -19389 NR_104480 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 15466 chr2 45219015 45219046 + 0 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 35911 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 20883 chr3 187403856 187403960 + 0 NA Intergenic Intergenic 35528 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 19563 chr3 53347527 53347723 + 0 NA promoter-TSS (NM_001290204) promoter-TSS (NM_001290204) 2 NM_001290204 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 5117 chr11 33633509 33633619 + 0 NA intron (NM_012194, intron 15 of 19) intron (NM_012194, intron 15 of 19) 67176 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 7717 chr12 117986749 117986853 + 0 NA Intergenic MER113|DNA|hAT-Charlie -18578 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 1584 chr1 116906953 116907057 + 0 NA Intergenic Intergenic -2918 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 28658 chr8 128184693 128184834 + 0 NA Intergenic Intergenic 34647 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 20581 chr3 166830072 166830176 + 0 NA Intergenic Intergenic -68559 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 17713 chr20 19099734 19099838 + 0 NA Intergenic Intergenic -112860 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 5527 chr11 66638576 66638611 + 0 NA promoter-TSS (NM_002896) promoter-TSS (NM_002896) -24 NM_001198843 5936 Hs.523822 NM_002896 ENSG00000173933 RBM4 LARK|RBM4A|ZCCHC21|ZCRB3A RNA binding motif protein 4 protein-coding 7219 chr12 64181513 64181714 + 0 NA Intergenic Intergenic 40683 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 21602 chr4 98143501 98143608 + 0 NA promoter-TSS (NM_174952) promoter-TSS (NM_174952) -314 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 14534 chr19 44800572 44800726 + 0 NA TTS (NM_001130852) TTS (NM_001130852) -8410 NM_005581 4059 Hs.625725 NM_005581 ENSG00000187244 BCAM AU|CD239|LU|MSK19 basal cell adhesion molecule (Lutheran blood group) protein-coding 22606 chr5 61299389 61299421 + 0 NA Intergenic Intergenic -32868 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 27696 chr8 38037094 38037246 + 0 NA intron (NM_004095, intron 1 of 2) L2c|LINE|L2 6668 NM_004095 1978 Hs.411641 NM_004095 ENSG00000187840 EIF4EBP1 4E-BP1|4EBP1|BP-1|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 protein-coding 8793 chr14 31244019 31244025 + 0 NA Intergenic LTR10F|LTR|ERV1 -36499 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 17802 chr20 24746304 24746449 + 0 NA Intergenic MER76|LTR|ERVL -202854 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 642 chr1 37514757 37514834 + 0 NA promoter-TSS (NM_022756) promoter-TSS (NM_022756) 24 NM_001270876 64769 Hs.17118 NM_022756 ENSG00000163875 MEAF6 C1orf149|CENP-28|EAF6|NY-SAR-91 MYST/Esa1 associated factor 6 protein-coding 2150 chr1 180154838 180154847 + 0 NA promoter-TSS (NM_002826) promoter-TSS (NM_002826) 9 NM_001004128 5768 Hs.744925 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 28587 chr8 124998369 124998557 + 0 NA promoter-TSS (NM_003129) promoter-TSS (NM_003129) -15 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 8191 chr13 44108540 44108641 + 0 NA intron (NR_132368, intron 2 of 3) intron (NR_132368, intron 2 of 3) -1959 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 8704 chr14 22766622 22766737 + 0 NA exon (NM_005015, exon 1 of 10) exon (NM_005015, exon 1 of 10) 157 NM_005015 5018 Hs.151134 NM_005015 ENSG00000155463 OXA1L OXA1 OXA1L, mitochondrial inner membrane protein protein-coding 23650 chr5 160467808 160467912 + 0 NA promoter-TSS (NR_132748) promoter-TSS (NR_132748) -391 NR_132748 107075116 Hs.735831 NR_132748 ENSG00000253522 MIR3142HG - MIR3142 host gene ncRNA 14743 chr19 51594401 51594561 + 0 NA promoter-TSS (NR_034159) promoter-TSS (NR_034159) -101 NR_034159 729975 Hs.716785 NR_034159 LINC01530 - long intergenic non-protein coding RNA 1530 ncRNA 29282 chr9 76215309 76215413 + 0 NA intron (NM_001190482, intron 20 of 36) intron (NM_001190482, intron 20 of 36) 179167 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 26164 chr7 44123541 44123703 + 0 NA promoter-TSS (NM_001256879) promoter-TSS (NM_001256879) -52 NM_001127218 5425 Hs.306791 NM_006230 ENSG00000106628 POLD2 - DNA polymerase delta 2, accessory subunit protein-coding 21273 chr4 27350292 27350396 + 0 NA Intergenic Intergenic 132865 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LOC101929199 - uncharacterized LOC101929199 ncRNA 13219 chr18 3247723 3247827 + 0 NA 5' UTR (NM_001303047, exon 1 of 5) 5' UTR (NM_001303047, exon 1 of 5) 245 NM_001303047 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 1764 chr1 153565801 153565905 + 0 NA promoter-TSS (NM_005978) promoter-TSS (NM_005978) -23 NM_005978 6273 Hs.516484 NM_005978 ENSG00000196754 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 11279 chr16 46831246 46831255 + 0 NA promoter-TSS (NM_001001436) promoter-TSS (NM_001001436) -88 NM_001001436 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 15624 chr2 61177168 61177322 + 0 NA promoter-TSS (NM_001321301) promoter-TSS (NM_001321301) -173 NM_001321304 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2 AHA1|Hch1 activator of HSP90 ATPase homolog 2 protein-coding 6290 chr11 125626194 125626298 + 0 NA promoter-TSS (NR_045205) promoter-TSS (NR_045205) 17 NR_045205 1111 Hs.24529 NM_001274 ENSG00000149554 CHEK1 CHK1 checkpoint kinase 1 protein-coding 19523 chr3 50627521 50627625 + 0 NA intron (NM_001243926, intron 4 of 12) intron (NM_001243926, intron 4 of 12) 10442 NM_001243925 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding 25460 chr6 163414599 163414703 + 0 NA promoter-TSS (NR_037593) promoter-TSS (NR_037593) 8 NM_001301085 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 10190 chr15 59105018 59105178 + 0 NA promoter-TSS (NM_004701) promoter-TSS (NM_004701) 13 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 19245 chr3 22714072 22714224 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 488430 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 18083 chr20 45293783 45293981 + 0 NA intron (NM_003833, intron 10 of 10) CpG -12961 NM_001281448 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 4849 chr11 12582182 12582348 + 0 NA Intergenic LTR16D|LTR|ERVL -92157 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 14103 chr19 11089445 11089549 + 0 NA 5' UTR (NM_001195799, exon 1 of 17) 5' UTR (NM_001195799, exon 1 of 17) 135 NM_001195800 3949 Hs.213289 NM_000527 ENSG00000130164 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 8668 chr14 20613583 20613737 + 0 NA Intergenic Intergenic -22837 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 25505 chr6 170405405 170405509 + 0 NA 3' UTR (NM_001286379, exon 11 of 11) 3' UTR (NM_001286379, exon 11 of 11) 74696 NR_039787 100616430 NR_039787 ENSG00000266245 MIR4644 - microRNA 4644 ncRNA 20129 chr3 129428576 129428754 + 0 NA promoter-TSS (NM_207307) promoter-TSS (NM_207307) -14 NM_207307 90288 Hs.652347 NM_207307 ENSG00000172771 EFCAB12 C3orf25 EF-hand calcium binding domain 12 protein-coding 16703 chr2 176473272 176473428 + 0 NA Intergenic Intergenic 127702 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 5592 chr11 69420611 69420739 + 0 NA Intergenic Intergenic -4996 NM_001319657 102724265 Hs.448669 NM_001319657 ENSG00000255980 LOC102724265 - uncharacterized LOC102724265 protein-coding 24717 chr6 53927358 53927392 + 0 NA Intergenic Intergenic -2607 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 776 chr1 43991600 43991712 + 0 NA promoter-TSS (NM_152499) promoter-TSS (NM_152499) 48 NM_152499 149473 Hs.632394 NM_152499 ENSG00000159214 CCDC24 - coiled-coil domain containing 24 protein-coding 13804 chr18 76983360 76983464 + 0 NA intron (NM_002385, intron 5 of 5) intron (NM_002385, intron 5 of 5) 33687 NM_002385 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 30892 chrX 103152280 103152454 + 0 NA Intergenic AluJb|SINE|Alu -59273 NM_022052 56000 Hs.60386 NM_022052 ENSG00000147206 NXF3 - nuclear RNA export factor 3 protein-coding 26266 chr7 50714871 50715037 + 0 NA intron (NM_001001555, intron 2 of 16) intron (NM_001001555, intron 2 of 16) -9653 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 18288 chr20 56359601 56359626 + 0 NA intron (NM_080821, intron 1 of 2) MER113|DNA|hAT-Charlie 686 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 1570 chr1 115783131 115783174 + 0 NA Intergenic Intergenic -14347 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 14916 chr2 2057299 2057378 + 0 NA intron (NM_001329851, intron 3 of 23) intron (NM_001329851, intron 3 of 23) -261894 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 6381 chr11 131694948 131695052 + 0 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) -31444 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 23404 chr5 142686147 142686155 + 0 NA promoter-TSS (NM_001257209) promoter-TSS (NM_001257209) 344 NM_000800 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 5625 chr11 72112397 72112485 + 0 NA promoter-TSS (NM_001278494) promoter-TSS (NM_001278494) -143 NM_001278491 25906 Hs.38044 NM_014042 ENSG00000110200 ANAPC15 APC15|C11orf51|HSPC020 anaphase promoting complex subunit 15 protein-coding 13758 chr18 70384386 70384525 + 0 NA intron (NR_110764, intron 1 of 2) LTR8|LTR|ERV1 136 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 25818 chr7 21361567 21361671 + 0 NA Intergenic Intergenic -66415 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 22200 chr5 9557816 9557955 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 9058 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 11073 chr16 18801614 18801715 + 0 NA promoter-TSS (NM_015161) promoter-TSS (NM_015161) 14 NM_015161 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 23619 chr5 159163497 159163601 + 0 NA intron (NM_001199380, intron 8 of 10) intron (NM_001199380, intron 8 of 10) 44099 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 16642 chr2 170928949 170929131 + 0 NA 5' UTR (NM_015530, exon 1 of 10) 5' UTR (NM_015530, exon 1 of 10) 514 NM_015530 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 8642 chr13 113216815 113216918 + 0 NA intron (NM_001008895, intron 2 of 19) intron (NM_001008895, intron 2 of 19) 7361 NM_001008895 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 14966 chr2 9423522 9423650 + 0 NA promoter-TSS (NM_001319067) promoter-TSS (NM_001319067) -17 NR_134957 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 24929 chr6 96520357 96520474 + 0 NA Intergenic MER41B|LTR|ERV1 -1411 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 29758 chr9 106588756 106588807 + 0 NA Intergenic Intergenic -12147 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 3721 chr10 58821027 58821131 + 0 NA intron (NM_001080512, intron 20 of 20) intron (NM_001080512, intron 20 of 20) 106064 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 29293 chr9 76400655 76400759 + 0 NA TTS (NR_026890) TTS (NR_026890) 2108 NR_026890 653162 Hs.655646 NR_026890 RPSAP9 LAMR1P9|RPSA_20_986 ribosomal protein SA pseudogene 9 pseudo 24503 chr6 37808288 37808436 + 0 NA Intergenic LTR16C|LTR|ERVL -11169 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 18785 chr22 30356848 30356946 + 0 NA promoter-TSS (NM_005877) promoter-TSS (NM_005877) 50 NM_005877 10291 Hs.406277 NM_005877 ENSG00000099995 SF3A1 PRP21|PRPF21|SAP114|SF3A120 splicing factor 3a subunit 1 protein-coding 14959 chr2 9179160 9179220 + 0 NA Intergenic Intergenic -27575 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 20613 chr3 169497634 169497738 + 0 NA intron (NM_004991, intron 1 of 16) L2|LINE|L2 49819 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 5204 chr11 44066094 44066224 + 0 NA promoter-TSS (NM_032592) promoter-TSS (NM_032592) -20 NM_001127219 84680 Hs.126706 NM_032592 ENSG00000110455 ACCS ACS|PHACS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) protein-coding 26748 chr7 102991856 102991960 + 0 NA intron (NR_105043, intron 7 of 20) intron (NR_105043, intron 7 of 20) 18471 NM_001085386 58160 Hs.621233 NM_001085386 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 326 chr1 21783165 21783277 + 0 NA promoter-TSS (NM_001032730) promoter-TSS (NM_001032730) -26 NM_001330394 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 29242 chr9 73536544 73536648 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 384865 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 6989 chr12 50220517 50220621 + 0 NA intron (NM_016357, intron 4 of 10) intron (NM_016357, intron 4 of 10) 2136 NM_001113547 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|SREBP3 LIM domain and actin binding 1 protein-coding 7740 chr12 120042426 120042509 + 0 NA intron (NM_207311, intron 2 of 8) L2a|LINE|L2 52623 NM_207311 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 19787 chr3 102195356 102195482 + 0 NA Intergenic Intergenic 31714 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 9688 chr14 101810271 101810399 + 0 NA intron (NM_178586, intron 1 of 12) intron (NM_178586, intron 1 of 12) 532 NM_178587 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 30980 chrX 113400201 113400305 + 0 NA intron (NR_110399, intron 3 of 3) MER21C|LTR|ERVL 357526 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 8892 chr14 36767920 36767969 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 110376 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 5129 chr11 34234143 34234247 + 0 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 123813 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 12038 chr17 7394616 7394746 + 0 NA 5' UTR (NM_001201576, exon 1 of 8) 5' UTR (NM_001201576, exon 1 of 8) 162 NM_020360 57048 Hs.534591 NM_020360 ENSG00000187838 PLSCR3 - phospholipid scramblase 3 protein-coding 6660 chr12 14240404 14240508 + 0 NA Intergenic Intergenic -125176 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 18061 chr20 44210660 44210811 + 0 NA promoter-TSS (NR_038338) promoter-TSS (NR_038338) 171 NM_016470 51526 Hs.75798 NM_016470 ENSG00000132823 OSER1 C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1 oxidative stress responsive serine rich 1 protein-coding 16898 chr2 199955603 199955652 + 0 NA non-coding (NR_004862, exon 1 of 8) non-coding (NR_004862, exon 1 of 8) 109 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 4681 chr11 1309683 1309735 + 0 NA promoter-TSS (NM_001318512) promoter-TSS (NM_001318512) 1 NR_029409 255512 Hs.588291 NR_029409 ENSG00000255153 TOLLIP-AS1 - TOLLIP antisense RNA 1 (head to head) ncRNA 7189 chr12 59595820 59595977 + 0 NA promoter-TSS (NM_001270623) promoter-TSS (NM_001270623) -142 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 2791 chr1 223700982 223701166 + 0 NA promoter-TSS (NM_001146068) promoter-TSS (NM_001146068) -519 NM_001146068 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 12976 chr17 74569651 74569652 + 0 NA Intergenic Intergenic -2308 NM_001324076 100130520 NM_001324073 LOC100130520 CD300H|CD300Hs CD300c molecule-like protein-coding 19335 chr3 36362970 36363074 + 0 NA Intergenic MER4B-int|LTR|ERV1 -17465 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 17944 chr20 36064782 36064877 + 0 NA Intergenic CpG -13869 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 NORAD LINC00657 non-coding RNA activated by DNA damage ncRNA 27220 chr7 150738792 150738896 + 0 NA intron (NM_001199577, intron 4 of 5) intron (NM_001199577, intron 4 of 5) 1496 NM_018384 55340 Hs.647079 NM_018384 ENSG00000196329 GIMAP5 HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD GTPase, IMAP family member 5 protein-coding 8076 chr13 32031658 32031704 + 0 NA promoter-TSS (NR_103839) promoter-TSS (NR_103839) -42 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 25599 chr7 5430236 5430249 + 0 NA Intergenic Intergenic -6696 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 4481 chr10 119658330 119658513 + 0 NA intron (NM_004281, intron 1 of 3) intron (NM_004281, intron 1 of 3) 7051 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 21981 chr4 165440672 165440776 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 54482 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 28175 chr8 90645594 90645698 + 0 NA exon (NM_001008495, exon 1 of 3) exon (NM_001008495, exon 1 of 3) 259 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 30616 chrX 38883363 38883467 + 0 NA Intergenic Intergenic -79532 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 27733 chr8 41529087 41529215 + 0 NA promoter-TSS (NM_032336) promoter-TSS (NM_032336) -55 NM_032336 84296 Hs.656996 NM_032336 ENSG00000147536 GINS4 SLD5 GINS complex subunit 4 protein-coding 4664 chr11 535669 535795 + 0 NA promoter-TSS (NM_001130442) promoter-TSS (NM_001130442) -165 NM_001318054 3265 Hs.37003 NM_005343 ENSG00000174775 HRAS C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras HRas proto-oncogene, GTPase protein-coding 20159 chr3 131502910 131503051 + 0 NA promoter-TSS (NM_007208) promoter-TSS (NM_007208) 36 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 9264 chr14 68232642 68232746 + 0 NA intron (NM_002877, intron 7 of 10) intron (NM_002877, intron 7 of 10) 396093 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 22209 chr5 10441756 10441885 + 0 NA promoter-TSS (NR_102746) promoter-TSS (NR_102746) 31 NR_102746 100505845 Hs.599395 NR_102746 ROPN1L-AS1 - ROPN1L antisense RNA 1 ncRNA 19930 chr3 115147287 115147413 + 0 NA promoter-TSS (NM_015642) promoter-TSS (NM_015642) -70 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 14440 chr19 39403883 39403961 + 0 NA Intergenic CpG -2925 NM_003407 7538 Hs.534052 NM_003407 ENSG00000128016 ZFP36 G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36 ZFP36 ring finger protein protein-coding 16755 chr2 180729304 180729408 + 0 NA intron (NR_104325, intron 3 of 5) intron (NR_104325, intron 3 of 5) 37252 NR_104320 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 22711 chr5 73365330 73365434 + 0 NA Intergenic Intergenic 83145 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 28483 chr8 118056312 118056446 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 55440 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 28370 chr8 103707440 103707579 + 0 NA intron (NM_001100117, intron 2 of 23) L1MA4|LINE|L1 -111679 NM_014677 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 23911 chr6 3610403 3610507 + 0 NA Intergenic Intergenic 141557 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 7159 chr12 57280326 57280422 + 0 NA exon (NM_001330121, exon 14 of 25) exon (NM_001330121, exon 14 of 25) -29181 NM_145064 246329 Hs.417595 NM_145064 ENSG00000185482 STAC3 NAM SH3 and cysteine rich domain 3 protein-coding 10337 chr15 67254663 67254725 + 0 NA promoter-TSS (NM_001271886) promoter-TSS (NM_001271886) 42 NM_001271886 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha- and gamma-adaptin binding protein protein-coding 8111 chr13 35855782 35855886 + 0 NA promoter-TSS (NM_001195430) promoter-TSS (NM_001195430) 27 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 25984 chr7 31327226 31327330 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 13646 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 7869 chr12 126403096 126403200 + 0 NA Intergenic Intergenic -39333 NR_130748 100128554 Hs.408255 NR_015398 ENSG00000214043 LOC100128554 - uncharacterized LOC100128554 ncRNA 18811 chr22 31753873 31754021 + 0 NA promoter-TSS (NM_014662) promoter-TSS (NM_014662) -4 NM_001242897 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 9160 chr14 61662754 61662858 + 0 NA Intergenic Intergenic -32595 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 11559 chr16 69385951 69386112 + 0 NA promoter-TSS (NM_005652) promoter-TSS (NM_005652) -43 NM_005652 7014 Hs.63335 NM_005652 ENSG00000132604 TERF2 TRBF2|TRF2 telomeric repeat binding factor 2 protein-coding 21792 chr4 128387142 128387246 + 0 NA Intergenic Intergenic -40822 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 15168 chr2 23487829 23487933 + 0 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 102454 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 28884 chr9 3827330 3827445 + 0 NA 3' UTR (NM_152629, exon 10 of 10) 3' UTR (NM_152629, exon 10 of 10) -71259 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 7402 chr12 89951375 89951512 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 3750 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LOC105369891 - uncharacterized LOC105369891 ncRNA 26228 chr7 47669617 47669721 + 0 NA Intergenic Intergenic 14425 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 9316 chr14 70907366 70907471 + 0 NA promoter-TSS (NM_001308160) promoter-TSS (NM_001308160) 13 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex homolog 1 (Drosophila) protein-coding 14928 chr2 3620904 3621037 + 0 NA intron (NM_001255988, intron 2 of 4) L1MA9|LINE|L1 14918 NM_001255989 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 28223 chr8 94823184 94823313 + 0 NA promoter-TSS (NM_017864) promoter-TSS (NM_017864) -42 NR_073444 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 27281 chr7 157010770 157010853 + 0 NA promoter-TSS (NM_005515) promoter-TSS (NM_005515) -46 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 13946 chr19 4369376 4369480 + 0 NA intron (NM_003025, intron 1 of 9) intron (NM_003025, intron 1 of 9) 25901 NM_032868 84954 Hs.321689 NM_032868 ENSG00000008382 MPND - MPN domain containing protein-coding 28289 chr8 100158407 100158511 + 0 NA 5' UTR (NM_003114, exon 1 of 19) 5' UTR (NM_003114, exon 1 of 19) 124 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 3563 chr10 34319693 34319797 + 0 NA intron (NM_001184791, intron 16 of 20) MamRTE1|LINE|RTE-BovB 495580 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 17836 chr20 31560930 31561082 + 0 NA intron (NM_030789, intron 9 of 11) intron (NM_030789, intron 9 of 11) 12257 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 8324 chr13 64371170 64371274 + 0 NA Intergenic L1M1|LINE|L1 -527097 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 27210 chr7 149497706 149497825 + 0 NA promoter-TSS (NM_001163474) promoter-TSS (NM_001163474) 42 NM_001163474 155061 Hs.24643 NM_152557 ENSG00000181220 ZNF746 PARIS zinc finger protein 746 protein-coding 22400 chr5 38595582 38595686 + 0 NA promoter-TSS (NM_002310) promoter-TSS (NM_002310) -229 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 12900 chr17 68457781 68457921 + 0 NA promoter-TSS (NM_017983) promoter-TSS (NM_017983) -327 NM_001320772 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 20337 chr3 146161280 146161302 + 0 NA 5' UTR (NM_000935, exon 1 of 19) 5' UTR (NM_000935, exon 1 of 19) 204 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 6024 chr11 108009251 108009355 + 0 NA 5' UTR (NM_003478, exon 1 of 19) 5' UTR (NM_003478, exon 1 of 19) 621 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 VACM-1|VACM1 cullin 5 protein-coding 7552 chr12 103841148 103841297 + 0 NA promoter-TSS (NM_001031701) promoter-TSS (NM_001031701) -25 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 13187 chr17 83051754 83051938 + 0 NA promoter-TSS (NM_001009905) promoter-TSS (NM_001009905) -36 NM_001320742 146712 Hs.607824 NM_001009905 ENSG00000175711 B3GNTL1 3-Gn-T8|B3GNT8|BGnT-8|beta-1|beta3Gn-T8|beta3GnTL1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 protein-coding 11685 chr16 78210465 78210640 + 0 NA intron (NM_001291997, intron 4 of 7) (CT)n|Simple_repeat|Simple_repeat 111139 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 12688 chr17 50867730 50867858 + 0 NA non-coding (NR_038458, exon 2 of 2) non-coding (NR_038458, exon 2 of 2) 184 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 22049 chr4 177309827 177309931 + 0 NA promoter-TSS (NM_018248) promoter-TSS (NM_018248) 42 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 25625 chr7 6374322 6374415 + 0 NA promoter-TSS (NM_018890) promoter-TSS (NM_018890) -127 NM_006908 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|Rac-1|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding 15695 chr2 66434242 66434414 + 0 NA promoter-TSS (NR_046438) promoter-TSS (NR_046438) -858 NR_046438 730198 Hs.526753 NR_046438 MEIS1-AS3 - MEIS1 antisense RNA 3 ncRNA 7549 chr12 103632675 103632779 + 0 NA intron (NM_017564, intron 6 of 68) LTR41B|LTR|ERVL 45436 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 23078 chr5 119036292 119036350 + 0 NA intron (NR_134249, intron 1 of 8) intron (NR_134249, intron 1 of 8) 1340 NR_134249 105379143 Hs.636285 NR_134249 ENSG00000249494 LOC105379143 - uncharacterized LOC105379143 ncRNA 13439 chr18 35502177 35502330 + 0 NA Intergenic LTR88b|LTR|Gypsy? -4262 NM_194281 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 22379 chr5 36459265 36459340 + 0 NA Intergenic LTR16C|LTR|ERVL -147053 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 3489 chr10 28532652 28532740 + 0 NA promoter-TSS (NM_016628) promoter-TSS (NM_016628) 108 NM_100264 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 21033 chr3 195443156 195443251 + 0 NA promoter-TSS (NM_012287) promoter-TSS (NM_012287) -115 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 5488 chr11 65615352 65615482 + 0 NA promoter-TSS (NM_032223) promoter-TSS (NM_032223) -895 NM_032223 399909 Hs.380801 NM_032223 ENSG00000197136 PCNX3 PCNXL3 pecanex homolog 3 (Drosophila) protein-coding 4106 chr10 94991671 94991775 + 0 NA Intergenic LTR10A|LTR|ERV1 53065 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 3628 chr10 44857827 44857931 + 0 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -53437 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 4176 chr10 97840330 97840451 + 0 NA intron (NR_108035, intron 1 of 2) intron (NR_108035, intron 1 of 2) 9408 NR_108035 100505561 Hs.351904 NR_108035 ENSG00000227356 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 7557 chr12 103965835 103965985 + 0 NA promoter-TSS (NM_003211) promoter-TSS (NM_003211) 95 NM_003211 6996 Hs.584809 NM_003211 ENSG00000139372 TDG hTDG thymine DNA glycosylase protein-coding 29714 chr9 101449447 101449526 + 0 NA Intergenic CpG -13706 NM_000035 229 Hs.530274 NM_000035 ENSG00000136872 ALDOB ALDB|ALDO2 aldolase, fructose-bisphosphate B protein-coding 2418 chr1 202836623 202836726 + 0 NA Intergenic Intergenic 16417 NR_038135 641515 Hs.23459 NR_038135 ENSG00000184774 MGAT4EP - MGAT4 family member E, pseudogene pseudo 14554 chr19 45443559 45443594 + 0 NA Intergenic CpG 6922 NR_106736 102464836 NR_106736 ENSG00000275726 MIR6088 hsa-mir-6088 microRNA 6088 ncRNA 13482 chr18 44789826 44789971 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 109000 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 26360 chr7 66994868 66994924 + 0 NA intron (NM_016038, intron 1 of 4) intron (NM_016038, intron 1 of 4) 705 NM_016038 51119 Hs.110445 NM_016038 ENSG00000126524 SBDS CGI-97|SDS|SWDS SBDS ribosome assembly guanine nucleotide exchange factor protein-coding 19632 chr3 66038774 66038878 + 0 NA promoter-TSS (NM_004742) promoter-TSS (NM_004742) 8 NM_015520 9223 Hs.476636 NM_004742 ENSG00000151276 MAGI1 AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|Magi1d|TNRC19|WWP3 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding 25364 chr6 153002764 153002873 + 0 NA promoter-TSS (NR_126056) promoter-TSS (NR_126056) -3 NM_001301870 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 15268 chr2 28639888 28639960 + 0 NA intron (NR_138141, intron 34 of 35) MIRc|SINE|MIR 73567 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 27111 chr7 140175489 140175632 + 0 NA intron (NM_030647, intron 1 of 19) intron (NM_030647, intron 1 of 19) 1381 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 928 chr1 56579406 56579510 + 0 NA 5' UTR (NM_003713, exon 1 of 6) 5' UTR (NM_003713, exon 1 of 6) 126 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 15174 chr2 24076412 24076554 + 0 NA promoter-TSS (NM_001291328) promoter-TSS (NM_001291328) -39 NM_016047 51639 Hs.177861 NM_016047 ENSG00000115128 SF3B6 CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a splicing factor 3b subunit 6 protein-coding 7274 chr12 75714597 75714701 + 0 NA Intergenic MIR|SINE|MIR -203011 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit processome component homolog protein-coding 1644 chr1 146037942 146038085 + 0 NA Intergenic Intergenic 14231 NR_104085 101954276 NR_104085 ENSG00000201558 RNVU1-6 RNU1-99|vU1.6 RNA, variant U1 small nuclear 6 snRNA 15129 chr2 19863690 19863770 + 0 NA Intergenic Intergenic -5124 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 15894 chr2 85003989 85004093 + 0 NA intron (NM_020122, intron 1 of 6) MER44B|DNA|TcMar-Tigger 32933 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 12654 chr17 49968590 49968705 + 0 NA promoter-TSS (NM_138281) promoter-TSS (NM_138281) -551 NM_138281 1748 Hs.591167 NM_001934 ENSG00000108813 DLX4 BP1|DLX7|DLX8|DLX9|OFC15 distal-less homeobox 4 protein-coding 29491 chr9 88776817 88776902 + 0 NA Intergenic Intergenic -30954 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 23235 chr5 134020366 134020409 + 0 NA Intergenic Intergenic -15254 NM_003374 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 22090 chr4 184417938 184418057 + 0 NA intron (NM_002199, intron 5 of 8) intron (NM_002199, intron 5 of 8) -35691 NR_125933 102723766 Hs.432281 NR_125933 ENSG00000249096 LOC102723766 - uncharacterized LOC102723766 ncRNA 4560 chr10 124436380 124436513 + 0 NA Intergenic AluJb|SINE|Alu 13535 NM_001146340 390010 Hs.712041 NM_001146340 ENSG00000229544 NKX1-2 C10orf121|NKX-1.1|bB238F13.2 NK1 homeobox 2 protein-coding 20860 chr3 186097845 186097998 + 0 NA intron (NM_004454, intron 5 of 12) intron (NM_004454, intron 5 of 12) 11191 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 15663 chr2 64643370 64643474 + 0 NA intron (NM_014755, intron 1 of 1) intron (NM_014755, intron 1 of 1) 10490 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2 SERTA domain containing 2 protein-coding 23937 chr6 5003651 5003774 + 0 NA promoter-TSS (NR_126016) promoter-TSS (NR_126016) -104 NR_126016 100129461 Hs.131700 NR_126015 ENSG00000272142 LYRM4-AS1 - LYRM4 antisense RNA 1 ncRNA 21947 chr4 158540679 158540783 + 0 NA intron (NR_045583, intron 1 of 16) intron (NR_045583, intron 1 of 16) 19017 NR_045583 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin/insulin like family peptide receptor 1 protein-coding 8509 chr13 100455002 100455106 + 0 NA intron (NM_001178004, intron 21 of 22) AluJb|SINE|Alu 25961 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 14276 chr19 18589458 18589562 + 0 NA exon (NM_001100418, exon 3 of 5) exon (NM_001100418, exon 3 of 5) 825 NM_001100418 55049 Hs.655317 NM_017967 ENSG00000006015 C19orf60 - chromosome 19 open reading frame 60 protein-coding 20930 chr3 190038125 190038229 + 0 NA intron (NM_001134418, intron 1 of 14) AluYi6|SINE|Alu -82787 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 4815 chr11 10488264 10488414 + 0 NA intron (NM_001025389, intron 6 of 14) L2c|LINE|L2 19987 NR_039705 100616263 NR_039705 ENSG00000255823 MIR4485 mir-4485 microRNA 4485 ncRNA 27263 chr7 155297666 155297812 + 0 NA promoter-TSS (NM_001346590) promoter-TSS (NM_001346590) -33 NM_001346590 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 17455 chr20 2101836 2101984 + 0 NA promoter-TSS (NM_080836) promoter-TSS (NM_080836) 28 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 281 chr1 19312155 19312231 + 0 NA promoter-TSS (NM_001040125) promoter-TSS (NM_001040125) -47 NM_003689 8574 Hs.571886 NM_003689 ENSG00000053371 AKR7A2 AFAR|AFAR1|AFB1-AR1|AKR7 aldo-keto reductase family 7 member A2 protein-coding 25424 chr6 158999779 158999949 + 0 NA exon (NM_031924, exon 1 of 8) exon (NM_031924, exon 1 of 8) 323 NM_031924 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke 3 homolog protein-coding 9790 chr15 22980342 22980495 + 0 NA promoter-TSS (NM_001324122).2 promoter-TSS (NM_001324122).2 23 NM_001324122 23191 Hs.26704 NM_014608 ENSG00000273749 CYFIP1 P140SRA-1|SHYC|SRA-1|SRA1 cytoplasmic FMR1 interacting protein 1 protein-coding 23252 chr5 134526958 134527062 + 0 NA intron (NM_015288, intron 1 of 10) CpG-22436 902 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 25043 chr6 116087552 116087656 + 0 NA Intergenic Intergenic -13232 NM_152729 221294 Hs.520341 NM_152729 ENSG00000178425 NT5DC1 C6orf200|LP2642|NT5C2L1 5'-nucleotidase domain containing 1 protein-coding 3412 chr10 22714457 22714618 + 0 NA promoter-TSS (NM_005028) promoter-TSS (NM_005028) 37 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 11947 chr17 4161423 4161527 + 0 NA intron (NR_039973, intron 1 of 1).3 intron (NR_039973, intron 1 of 1).3 17854 NM_001254755 124936 Hs.513871 NM_144611 ENSG00000167740 CYB5D2 - cytochrome b5 domain containing 2 protein-coding 4928 chr11 16881428 16881532 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 132936 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 26457 chr7 76423419 76423487 + 0 NA intron (NM_007155, intron 1 of 8) LTR35A|LTR|ERV1 -1502 NM_001110354 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 8376 chr13 76512820 76512924 + 0 NA Intergenic Intergenic 373533 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 10427 chr15 73647355 73647459 + 0 NA Intergenic AluJr|SINE|Alu -13995 NM_001161364 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 9665 chr14 100068681 100068743 + 0 NA intron (NM_016337, intron 1 of 13) L2b|LINE|L2 3298 NM_016337 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 29077 chr9 35646777 35646900 + 0 NA non-coding (NR_135130, exon 2 of 2) non-coding (NR_135130, exon 2 of 2) 568 NR_135130 101926948 Hs.639412 NR_135130 LOC101926948 - uncharacterized LOC101926948 ncRNA 13793 chr18 76491503 76491547 + 0 NA promoter-TSS (NR_136504) promoter-TSS (NR_136504) -127 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 9993 chr15 43510849 43511047 + 0 NA promoter-TSS (NM_005657) promoter-TSS (NM_005657) -439 NM_005657 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|TP53|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 11184 chr16 28863411 28863513 + 0 NA promoter-TSS (NM_001145795) promoter-TSS (NM_001145795) -295 NM_001145795 25970 Hs.15744 NM_015503 ENSG00000178188 SH2B1 PSM|SH2B SH2B adaptor protein 1 protein-coding 6485 chr12 5388957 5389061 + 0 NA Intergenic Intergenic -43105 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 17346 chr2 237490346 237490450 + 0 NA intron (NM_001281474, intron 2 of 13) intron (NM_001281474, intron 2 of 13) 3179 NM_001281473 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 13927 chr19 3435242 3435334 + 0 NA intron (NM_005597, intron 6 of 8) CpG-13286 45254 NM_001136503 284422 Hs.130714 NM_001136503 ENSG00000095932 SMIM24 C19orf77|HSPC323|MARDI small integral membrane protein 24 protein-coding 5150 chr11 35040260 35040415 + 0 NA Intergenic Intergenic 97695 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 748 chr1 43021960 43022064 + 0 NA Intergenic Intergenic -62836 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 15120 chr2 19347979 19348151 + 0 NA promoter-TSS (NR_039914) promoter-TSS (NR_039914) -364 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 22176 chr5 5422240 5422402 + 0 NA promoter-TSS (NM_015325) promoter-TSS (NM_015325) -352 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 1943 chr1 161766196 161766347 + 0 NA promoter-TSS (NM_007348) promoter-TSS (NM_007348) 27 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 31166 chrX 153102391 153102543 + 0 NA Intergenic Intergenic 30053 NM_032882 84968 Hs.533301 NM_032882 ENSG00000235961 PNMA6A MA6|PNMA6|PNMA6C paraneoplastic Ma antigen family member 6A protein-coding 30899 chrX 103629594 103629698 + 0 NA intron (NM_004780, intron 2 of 2) CpG 682 NM_001006639 9338 Hs.95243 NM_004780 ENSG00000172465 TCEAL1 SIIR|WEX9|p21|pp21 transcription elongation factor A like 1 protein-coding 18167 chr20 49812557 49812620 + 0 NA promoter-TSS (NM_001260491) promoter-TSS (NM_001260491) -125 NR_048538 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 10101 chr15 51907686 51907772 + 0 NA intron (NM_014547, intron 9 of 9) intron (NM_014547, intron 9 of 9) 16391 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 6905 chr12 43847604 43847708 + 0 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 11795 NM_001286213 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 3747 chr10 61628983 61629086 + 0 NA Intergenic Intergenic -33927 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 C10orf107 bA63A2.1 chromosome 10 open reading frame 107 protein-coding 30093 chr9 124771254 124771387 + 0 NA promoter-TSS (NM_001278546) promoter-TSS (NM_001278546) -10 NM_033334 2649 Hs.20131 NM_001489 ENSG00000148200 NR6A1 CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR nuclear receptor subfamily 6 group A member 1 protein-coding 22105 chr4 185143764 185143858 + 0 NA intron (NM_001151, intron 1 of 3) CpG 548 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 14034 chr19 8390128 8390279 + 0 NA promoter-TSS (NR_049795) promoter-TSS (NR_049795) -118 NM_004218 9230 Hs.558403 NM_004218 ENSG00000185236 RAB11B H-YPT3 RAB11B, member RAS oncogene family protein-coding 31139 chrX 150032909 150033013 + 0 NA Intergenic Intergenic 94413 NR_027456 100272228 Hs.496916 NR_027456 ENSG00000235703 LINC00894 - long intergenic non-protein coding RNA 894 ncRNA 22629 chr5 65086699 65086803 + 0 NA Intergenic Intergenic 317833 NM_001297644 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated protein homolog protein-coding 27417 chr8 12951386 12951522 + 0 NA intron (NM_020844, intron 1 of 4) CpG 5780 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 KIAA1456 C8orf79|TRM9L KIAA1456 protein-coding 21610 chr4 98964550 98964654 + 0 NA Intergenic MSTB1|LTR|ERVL-MaLR -31035 NM_015143 23173 Hs.480364 NM_015143 ENSG00000164024 METAP1 MAP1A|MetAP1A methionyl aminopeptidase 1 protein-coding 17138 chr2 220279432 220279521 + 0 NA Intergenic Intergenic -372911 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 8684 chr14 21383508 21383612 + 0 NA intron (NM_007192, intron 1 of 25) CpG 706 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 7669 chr12 112382339 112382495 + 0 NA promoter-TSS (NM_001109662) promoter-TSS (NM_001109662) -325 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12orf51|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 20029 chr3 122416173 122416205 + 0 NA promoter-TSS (NM_019069) promoter-TSS (NM_019069) -17 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 5369 chr11 62560688 62560855 + 0 NA promoter-TSS (NR_037427) promoter-TSS (NR_037427) -465 NR_037427 100500804 NR_037427 MIR3654 - microRNA 3654 ncRNA 10575 chr15 82742148 82742252 + 0 NA Intergenic L1MCa|LINE|L1 -2420 NR_036446 283693 Hs.560399 NR_036446 ACTG1P17 - actin gamma 1 pseudogene 17 pseudo 12043 chr17 7455541 7455645 + 0 NA intron (NM_000747, intron 9 of 10) intron (NM_000747, intron 9 of 10) 10506 NM_000747 1140 Hs.330386 NM_000747 ENSG00000170175 CHRNB1 ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS cholinergic receptor nicotinic beta 1 subunit protein-coding 9102 chr14 58746414 58746518 + 0 NA Intergenic Intergenic -81822 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 27613 chr8 28385530 28385605 + 0 NA intron (NM_018660, intron 1 of 9) CpG 893 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 26132 chr7 42176494 42176647 + 0 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 60449 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 15556 chr2 54533109 54533213 + 0 NA intron (NM_003128, intron 2 of 35) Tigger7|DNA|TcMar-Tigger 3939 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 21153 chr4 7402702 7402745 + 0 NA intron (NM_020777, intron 2 of 26) L1M5|LINE|L1 32250 NM_001085382 768239 Hs.662523 NM_001085382 ENSG00000178597 PSAPL1 - prosaposin-like 1 (gene/pseudogene) protein-coding 26055 chr7 36291570 36291700 + 0 NA intron (NM_030636, intron 6 of 7) intron (NM_030636, intron 6 of 7) 75538 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 3032 chr1 236523869 236523985 + 0 NA non-coding (NR_034040, exon 1 of 1) non-coding (NR_034040, exon 1 of 1) 200 NM_201544 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 8733 chr14 23366626 23366730 + 0 NA Intergenic CpG -1045 NM_032459 10278 Hs.24587 NM_005864 ENSG00000100842 EFS CAS3|CASS3|EFS1|EFS2|HEFS|SIN embryonal Fyn-associated substrate protein-coding 24914 chr6 90285697 90285801 + 0 NA intron (NM_021813, intron 1 of 8) intron (NM_021813, intron 1 of 8) 11159 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25 BTB domain and CNC homolog 2 protein-coding 20418 chr3 151976256 151976405 + 0 NA Intergenic Intergenic -48155 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 28567 chr8 123274697 123274847 + 0 NA promoter-TSS (NM_001204180) promoter-TSS (NM_001204180) -285 NM_007222 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 24864 chr6 84066024 84066128 + 0 NA intron (NM_001346544, intron 3 of 3) MLT2D|LTR|ERVL 31957 NM_001346544 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 16866 chr2 196292418 196292525 + 0 NA intron (NM_020760, intron 14 of 28) intron (NM_020760, intron 14 of 28) 32447 NR_110226 101927482 Hs.191841 NR_110225 LOC101927482 - uncharacterized LOC101927482 ncRNA 29717 chr9 101479812 101479969 + 0 NA non-coding (NR_121573, exon 3 of 4) non-coding (NR_121573, exon 3 of 4) 6880 NM_001303108 84302 Hs.388742 NM_032342 ENSG00000165152 TMEM246 C9orf125 transmembrane protein 246 protein-coding 6468 chr12 4011725 4011829 + 0 NA Intergenic Intergenic -138329 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 30459 chrX 6660673 6660777 + 0 NA Intergenic Intergenic -125607 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge, X-linked 3A protein-coding 4989 chr11 19753737 19753844 + 0 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) 6293 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 21530 chr4 83548558 83548689 + 0 NA intron (NM_032717, intron 2 of 11) intron (NM_032717, intron 2 of 11) 12306 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 6192 chr11 119218570 119218674 + 0 NA intron (NM_005188, intron 1 of 15) Tigger7|DNA|TcMar-Tigger 12346 NM_005188 867 Hs.504096 NM_005188 ENSG00000110395 CBL C-CBL|CBL2|FRA11B|NSLL|RNF55 Cbl proto-oncogene protein-coding 13326 chr18 23586782 23586915 + 0 NA promoter-TSS (NM_000271) promoter-TSS (NM_000271) -231 NM_000271 4864 Hs.464779 NM_000271 ENSG00000141458 NPC1 NPC NPC intracellular cholesterol transporter 1 protein-coding 26563 chr7 90211683 90211847 + 0 NA promoter-TSS (NR_110029) promoter-TSS (NR_110029) 79 NM_001244944 261729 Hs.489051 NM_152999 ENSG00000157214 STEAP2 IPCA1|PCANAP1|PUMPCn|STAMP1|STMP STEAP2 metalloreductase protein-coding 24218 chr6 26123954 26124104 + 0 NA promoter-TSS (NM_003526) promoter-TSS (NM_003526) -116 NM_003512 8334 Hs.484950 NM_003512 ENSG00000180573 HIST1H2AC H2A/l|H2AFL|dJ221C16.4 histone cluster 1 H2A family member c protein-coding 21516 chr4 83012861 83012965 + 0 NA promoter-TSS (NM_001115007) promoter-TSS (NM_001115007) 28 NM_001115007 132660 Hs.96952 NM_194282 ENSG00000189308 LIN54 CXCDC1|JC8.6|MIP120|TCX1 lin-54 DREAM MuvB core complex component protein-coding 11054 chr16 15482484 15482635 + 0 NA intron (NM_033201, intron 1 of 5) intron (NM_033201, intron 1 of 5) -19707 NM_001142469 89927 Hs.401798 NM_033201 ENSG00000166780 C16orf45 MINP chromosome 16 open reading frame 45 protein-coding 16363 chr2 135095722 135095826 + 0 NA intron (NM_012233, intron 5 of 23) Tigger7|DNA|TcMar-Tigger 43509 NM_001172435 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 18242 chr20 53081467 53081562 + 0 NA intron (NM_173485, intron 1 of 2) Tigger9b|DNA|TcMar-Tigger -103769 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 24221 chr6 26171881 26172009 + 0 NA TTS (NM_138720) TTS (NM_138720) -11851 NM_003523 8344 Hs.534369 NM_003523 ENSG00000274290 HIST1H2BE H2B.h|H2B/h|H2BFH|dJ221C16.8 histone cluster 1 H2B family member e protein-coding 14128 chr19 11814103 11814241 + 0 NA promoter-TSS (NM_152357) promoter-TSS (NM_152357) -120 NM_152357 126070 Hs.418192 NM_152357 ENSG00000171295 ZNF440 - zinc finger protein 440 protein-coding 28709 chr8 132675545 132675649 + 0 NA promoter-TSS (NM_001321964) promoter-TSS (NM_001321964) 20 NM_001321962 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 3141 chr1 246754089 246754193 + 0 NA intron (NM_016002, intron 5 of 11) HERVIP10B3-int|LTR|ERV1 30065 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 15846 chr2 74958829 74958957 + 0 NA intron (NM_019896, intron 1 of 3) CpG 245 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 22500 chr5 51653117 51653221 + 0 NA Intergenic MIR|SINE|MIR -269837 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 21209 chr4 15938271 15938417 + 0 NA 5' UTR (NM_005130, exon 2 of 3) 5' UTR (NM_005130, exon 2 of 3) 396 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 5258 chr11 48052433 48052537 + 0 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) -44297 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 12596 chr17 46264321 46264425 + 0 NA Intergenic Intergenic -30758 NM_014834 9884 Hs.579108 NM_014834 ENSG00000176681 LRRC37A LRRC37 leucine rich repeat containing 37A protein-coding 18979 chr22 42680709 42680813 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -31362 NM_000398 1727 Hs.561064 NM_000398 ENSG00000100243 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 20053 chr3 124429281 124429385 + 0 NA intron (NM_001024660, intron 15 of 59) intron (NM_001024660, intron 15 of 59) 55001 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 1335 chr1 94325767 94325835 + 0 NA Intergenic Intergenic -78041 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 5690 chr11 76788767 76788979 + 0 NA intron (NM_001318478, intron 1 of 1) intron (NM_001318478, intron 1 of 1) -2879 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 7718 chr12 118016580 118016717 + 0 NA promoter-TSS (NM_001130112) promoter-TSS (NM_001130112) -13 NR_144504 5985 Hs.731908 NM_007370 ENSG00000111445 RFC5 RFC36 replication factor C subunit 5 protein-coding 9622 chr14 96246567 96246671 + 0 NA Intergenic Intergenic -9591 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 15306 chr2 31337948 31338103 + 0 NA intron (NM_000379, intron 34 of 35) intron (NM_000379, intron 34 of 35) 76720 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 19750 chr3 99548883 99548955 + 0 NA Intergenic Intergenic -89677 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 17893 chr20 34303275 34303427 + 0 NA promoter-TSS (NM_001322085) promoter-TSS (NM_001322085) 160 NM_000687 191 Hs.388004 NM_000687 ENSG00000101444 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 17089 chr2 216777822 216777926 + 0 NA Intergenic Intergenic 82185 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 4847 chr11 12378027 12378109 + 0 NA intron (NM_018222, intron 1 of 12) CpG 589 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 5240 chr11 47176892 47176996 + 0 NA TTS (NM_001184975) TTS (NM_001184975) 181 NM_001242832 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 11258 chr16 31074252 31074356 + 0 NA promoter-TSS (NM_024706) promoter-TSS (NM_024706) 16 NM_024706 79759 Hs.102928 NM_024706 ENSG00000167394 ZNF668 - zinc finger protein 668 protein-coding 165 chr1 11262714 11262727 + 0 NA promoter-TSS (NM_004958) promoter-TSS (NM_004958) -169 NM_004958 2475 Hs.338207 NM_004958 ENSG00000198793 MTOR FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS mechanistic target of rapamycin protein-coding 29474 chr9 88076261 88076412 + 0 NA intron (NR_135138, intron 1 of 1) CpG 1564 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 11149 chr16 24070976 24071128 + 0 NA intron (NM_212535, intron 5 of 16) L2c|LINE|L2 -132064 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 20882 chr3 187208358 187208493 + 0 NA promoter-TSS (NR_110052) promoter-TSS (NR_110052) -796 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 6588 chr12 9872927 9873047 + 0 NA Intergenic LTR18B|LTR|ERVL -3128 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 4509 chr10 121324964 121325085 + 0 NA Intergenic L1MC3|LINE|L1 206290 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 6074 chr11 111766314 111766418 + 0 NA promoter-TSS (NM_001177563) promoter-TSS (NM_001177563) 79 NM_001177562 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 9887 chr15 38069623 38069730 + 0 NA Intergenic Intergenic 29283 NR_120330 101928227 Hs.602381 NR_120330 ENSG00000259225 LOC101928227 - uncharacterized LOC101928227 ncRNA 29634 chr9 96875183 96875287 + 0 NA Intergenic MIRb|SINE|MIR 6335 NR_038890 100132781 Hs.710921 NR_038890 LOC100132781 - cyclin Y like 1 pseudogene pseudo 2553 chr1 209325677 209325781 + 0 NA intron (NR_135085, intron 1 of 2) LFSINE_Vert|SINE|tRNA 273 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 12309 chr17 31094748 31094900 + 0 NA promoter-TSS (NM_000267) promoter-TSS (NM_000267) -103 NM_000267 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 3270 chr10 8970003 8970107 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 72066 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LOC105755953 - uncharacterized LOC105755953 ncRNA 14722 chr19 50476773 50476787 + 0 NA promoter-TSS (NM_001308429) promoter-TSS (NM_001308429) -34 NM_001308429 112703 Hs.448941 NM_138411 ENSG00000142530 FAM71E1 - family with sequence similarity 71 member E1 protein-coding 2569 chr1 209607488 209607572 + 0 NA intron (NM_020439, intron 6 of 12) intron (NM_020439, intron 6 of 12) 15980 NR_036213 100422894 NR_036213 ENSG00000196878 MIR4260 - microRNA 4260 ncRNA 7880 chr12 129660116 129660213 + 0 NA intron (NM_133448, intron 2 of 8) (AG)n|Simple_repeat|Simple_repeat 243503 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 14785 chr19 54449017 54449189 + 0 NA promoter-TSS (NR_126418) promoter-TSS (NR_126418) -59 NM_052925 114823 Hs.502378 NM_052925 ENSG00000167615 LENG8 pp13842 leukocyte receptor cluster member 8 protein-coding 26139 chr7 42888433 42888537 + 0 NA Intergenic Intergenic 23605 NM_001099858 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 29409 chr9 84947429 84947605 + 0 NA intron (NM_001018064, intron 13 of 16) L2c|LINE|L2 277140 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 21597 chr4 95715951 95716055 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL -124085 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase (lipoamide) alpha 2 protein-coding 18509 chr21 36156298 36156402 + 0 NA promoter-TSS (NR_038892) promoter-TSS (NR_038892) -42 NR_038893 100506428 Hs.651214 NR_038892 ENSG00000236830 CBR3-AS1 PlncRNA-1|PlncRNA1 CBR3 antisense RNA 1 ncRNA 23625 chr5 159510406 159510510 + 0 NA Intergenic Intergenic -44182 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 16536 chr2 159755956 159756060 + 0 NA intron (NM_001282807, intron 5 of 8) intron (NM_001282807, intron 5 of 8) 22117 NM_001282807 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 22998 chr5 109410038 109410226 + 0 NA promoter-TSS (NM_014819) promoter-TSS (NM_014819) -158 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 319 chr1 21329464 21329509 + 0 NA intron (NM_001113348, intron 1 of 18) MIRb|SINE|MIR 16055 NM_001113348 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 10942 chr16 4290424 4290528 + 0 NA Intergenic AluJr|SINE|Alu -17476 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 2571 chr1 209653129 209653268 + 0 NA promoter-TSS (NM_000228) promoter-TSS (NM_000228) -723 NM_000228 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 1179 chr1 84174306 84174410 + 0 NA intron (NM_001242861, intron 2 of 10) L2c|LINE|L2 -7274 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 30712 chrX 49167218 49167297 + 0 NA 3' UTR (NM_001099681, exon 5 of 5) 3' UTR (NM_001099681, exon 5 of 5) 4414 NM_001099681 79917 Hs.193170 NM_024859 ENSG00000269313 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 1922 chr1 161045898 161046002 + 0 NA promoter-TSS (NM_007122) promoter-TSS (NM_007122) 29 NM_007122 7391 Hs.414880 NM_007122 ENSG00000158773 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 12516 chr17 42407652 42407756 + 0 NA intron (NM_012232, intron 1 of 1) intron (NM_012232, intron 1 of 1) 15616 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 PTRF CAVIN|CAVIN1|CGL4|FKSG13|cavin-1 polymerase I and transcript release factor protein-coding 21933 chr4 154744121 154744200 + 0 NA 5' UTR (NM_004744, exon 1 of 3) 5' UTR (NM_004744, exon 1 of 3) 189 NM_004744 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) protein-coding 27862 chr8 55233485 55233589 + 0 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 131080 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 10201 chr15 59350257 59350369 + 0 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 22559 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 2948 chr1 232127317 232127421 + 0 NA Intergenic L1MB5|LINE|L1 201535 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 26949 chr7 124720387 124720469 + 0 NA Intergenic Intergenic 45597 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 4566 chr10 124916712 124916816 + 0 NA Intergenic CpG -25359 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 28627 chr8 127038725 127038922 + 0 NA Intergenic L2b|LINE|L2 25669 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 15217 chr2 26961761 26961907 + 0 NA Intergenic Intergenic -8537 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 8781 chr14 28744308 28744412 + 0 NA intron (NR_125758, intron 2 of 6) intron (NR_125758, intron 2 of 6) 20959 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 26111 chr7 41065812 41065916 + 0 NA Intergenic Intergenic -35740 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 18517 chr21 36966469 36966628 + 0 NA 5' UTR (NM_001242784, exon 1 of 12) 5' UTR (NM_001242784, exon 1 of 12) 108 NM_001242784 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 17443 chr20 1478264 1478368 + 0 NA exon (NM_001122962, exon 3 of 5) exon (NM_001122962, exon 3 of 5) -10624 NR_038164 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 21005 chr3 193872405 193872502 + 0 NA Intergenic Intergenic 121785 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 10709 chr15 90648369 90648473 + 0 NA intron (NR_120372, intron 2 of 3) MER41B|LTR|ERV1 -11813 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 28283 chr8 99013198 99013350 + 0 NA promoter-TSS (NM_181661) promoter-TSS (NM_181661) 8 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 14182 chr19 14366730 14366874 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -2812 NR_134908 105372288 Hs.628463 NR_134908 ENSG00000266913 LINC01841 - long intergenic non-protein coding RNA 1841 ncRNA 16297 chr2 128306382 128306414 + 0 NA intron (NM_004807, intron 1 of 1) intron (NM_004807, intron 1 of 1) 12199 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 18658 chr22 20858750 20858928 + 0 NA promoter-TSS (NM_058004) promoter-TSS (NM_058004) -27 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 18536 chr21 38840038 38840142 + 0 NA Intergenic Intergenic -17449 NR_109926 101928398 Hs.122403 NR_109926 LOC101928398 - uncharacterized LOC101928398 ncRNA 1133 chr1 75855079 75855183 + 0 NA intron (NM_002440, intron 8 of 19) AluJr4|SINE|Alu 58260 NM_002440 4438 Hs.216639 NM_002440 ENSG00000057468 MSH4 - mutS homolog 4 protein-coding 4783 chr11 8814415 8814460 + 0 NA intron (NM_005418, intron 3 of 22) L2a|LINE|L2 -3102 NM_139157 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 23439 chr5 146283603 146283707 + 0 NA intron (NM_018989, intron 19 of 20) intron (NM_018989, intron 19 of 20) -55369 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 21661 chr4 105146733 105146749 + 0 NA promoter-TSS (NM_001127208) promoter-TSS (NM_001127208) 56 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 24385 chr6 31902406 31902433 + 0 NA promoter-TSS (NM_181842) promoter-TSS (NM_181842) -427 NM_181842 221527 Hs.234027 NM_181842 ENSG00000204366 ZBTB12 Bat9|C6orf46|D6S59E|G10|NG35 zinc finger and BTB domain containing 12 protein-coding 19281 chr3 27345669 27345801 + 0 NA intron (NM_199347, intron 5 of 24) intron (NM_199347, intron 5 of 24) 23725 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 2837 chr1 225777701 225777833 + 0 NA promoter-TSS (NM_001130440) promoter-TSS (NM_001130440) -46 NM_003133 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 4456 chr10 118755059 118755198 + 0 NA 5' UTR (NM_153810, exon 1 of 9) 5' UTR (NM_153810, exon 1 of 9) 118 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 26257 chr7 50379202 50379355 + 0 NA intron (NM_001220771, intron 3 of 3) intron (NM_001220771, intron 3 of 3) 60230 NM_001291842 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 25973 chr7 30504850 30504981 + 0 NA promoter-TSS (NM_001199815) promoter-TSS (NM_001199815) -74 NM_001199817 79017 Hs.530024 NM_024051 ENSG00000006625 GGCT C7orf24|CRF21|GCTG|GGC gamma-glutamylcyclotransferase protein-coding 1575 chr1 116418552 116418678 + 0 NA promoter-TSS (NR_027646) promoter-TSS (NR_027646) 7 NR_027646 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 30825 chrX 72312666 72312770 + 0 NA Intergenic (CTGCCC)n|Simple_repeat|Simple_repeat -5531 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 16846 chr2 191594173 191594277 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -83847 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 2428 chr1 203327952 203328089 + 0 NA Intergenic Intergenic 22484 NM_006763 7832 Hs.519162 NM_006763 ENSG00000159388 BTG2 APRO1|PC3|TIS21 BTG anti-proliferation factor 2 protein-coding 11673 chr16 77213865 77213940 + 0 NA TTS (NM_001129979) TTS (NM_001129979) 14450 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 4718 chr11 4094690 4094794 + 0 NA promoter-TSS (NM_001318064) promoter-TSS (NM_001318064) 57 NM_001033 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 11094 chr16 19811502 19811606 + 0 NA intron (NR_130968, intron 7 of 8) intron (NR_130968, intron 7 of 8) 73357 NM_016235 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 20965 chr3 191359064 191359168 + 0 NA intron (NM_178335, intron 3 of 11) intron (NM_178335, intron 3 of 11) -28580 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 8628 chr13 111153563 111153712 + 0 NA promoter-TSS (NR_120398) promoter-TSS (NR_120398) -10 NM_001330598 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 80 chr1 6385895 6386076 + 0 NA promoter-TSS (NM_181864) promoter-TSS (NM_181864) -162 NM_181864 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 7131 chr12 56291580 56291709 + 0 NA intron (NM_004077, intron 1 of 10) L3|LINE|CR1 8747 NM_004077 1431 Hs.743252 NM_004077 ENSG00000062485 CS - citrate synthase protein-coding 10954 chr16 4496448 4496534 + 0 NA intron (NM_001286267, intron 2 of 6) intron (NM_001286267, intron 2 of 6) 633 NM_001127205 3163 Hs.284279 NM_002134 ENSG00000103415 HMOX2 HO-2 heme oxygenase 2 protein-coding 27227 chr7 151124048 151124176 + 0 NA TTS (NM_001308304) TTS (NM_001308304) 9434 NM_001308305 116988 Hs.647075 NM_031946 ENSG00000133612 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 18790 chr22 30667733 30667837 + 0 NA 5' UTR (NM_001304795, exon 1 of 3) 5' UTR (NM_001304795, exon 1 of 3) 105 NM_152511 150290 Hs.517544 NM_152511 ENSG00000167065 DUSP18 DSP18|DUSP20|LMWDSP20 dual specificity phosphatase 18 protein-coding 12803 chr17 61412231 61412335 + 0 NA exon (NM_203425, exon 1 of 1) exon (NM_203425, exon 1 of 1) 532 NM_203425 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 protein-coding 22622 chr5 62306129 62306288 + 0 NA promoter-TSS (NM_001243952) promoter-TSS (NM_001243952) 46 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 22822 chr5 83568346 83568387 + 0 NA intron (NM_001164097, intron 11 of 13) intron (NM_001164097, intron 11 of 13) -6052 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 383 chr1 24683817 24683921 + 0 NA Intergenic LTR23|LTR|ERV1 40310 NM_001303449 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 5247 chr11 47269937 47270041 + 0 NA promoter-TSS (NM_001135943) promoter-TSS (NM_001135943) -131 NM_130476 8567 Hs.82548 NM_003682 ENSG00000110514 MADD DENN|IG20|RAB3GEP MAP kinase activating death domain protein-coding 22508 chr5 52800033 52800154 + 0 NA 5' UTR (NM_015946, exon 2 of 3) 5' UTR (NM_015946, exon 2 of 3) 11791 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 2532 chr1 207963681 207963693 + 0 NA Intergenic CpG -52349 NM_001773 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 3817 chr10 69222760 69222864 + 0 NA intron (NM_025130, intron 1 of 17) intron (NM_025130, intron 1 of 17) 2509 NM_025130 80201 Hs.522988 NM_025130 ENSG00000156510 HKDC1 - hexokinase domain containing 1 protein-coding 13738 chr18 67516044 67516218 + 0 NA promoter-TSS (NR_033921) promoter-TSS (NR_033921) -415 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 31068 chrX 132271390 132271491 + 0 NA intron (NR_110410, intron 2 of 2) intron (NR_110410, intron 2 of 2) -51960 NM_001271187 57826 Hs.119889 NM_021183 ENSG00000123728 RAP2C - RAP2C, member of RAS oncogene family protein-coding 19778 chr3 101849052 101849202 + 0 NA promoter-TSS (NM_031419) promoter-TSS (NM_031419) -387 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 8496 chr13 99087651 99087821 + 0 NA non-coding (NR_047482, exon 1 of 1) non-coding (NR_047482, exon 1 of 1) 1013 NR_047482 100861541 Hs.344872 NR_047482 DOCK9-AS2 - DOCK9 antisense RNA 2 (head to head) ncRNA 30592 chrX 29652663 29652767 + 0 NA intron (NM_014271, intron 5 of 10) MLT1H|LTR|ERVL-MaLR 78437 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 29268 chr9 75230017 75230147 + 0 NA Intergenic LTR18C|LTR|ERVL 141600 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 16957 chr2 205025165 205025269 + 0 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 479424 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 28342 chr8 101635835 101636022 + 0 NA intron (NM_001330593, intron 11 of 15) intron (NM_001330593, intron 11 of 15) 143488 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 92 chr1 6701768 6701779 + 0 NA exon (NM_018198, exon 1 of 16) exon (NM_018198, exon 1 of 16) 133 NM_018198 55735 Hs.462640 NM_018198 ENSG00000007923 DNAJC11 dJ126A5.1 DnaJ heat shock protein family (Hsp40) member C11 protein-coding 9799 chr15 29269788 29269892 + 0 NA promoter-TSS (NM_138704).2 promoter-TSS (NM_138704).2 -24 NM_138704 56160 Hs.94011 NM_138704 ENSG00000185115 NSMCE3 HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3 NSE3 homolog, SMC5-SMC6 complex component protein-coding 11011 chr16 10944358 10944498 + 0 NA promoter-TSS (NM_001243403) promoter-TSS (NM_001243403) -60 NM_001243403 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain family 16 member A protein-coding 8413 chr13 79589999 79590114 + 0 NA Intergenic Intergenic 23329 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 23488 chr5 149551486 149551649 + 0 NA promoter-TSS (NM_001025105) promoter-TSS (NM_001025105) -15 NM_001892 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 1164 chr1 81174917 81175062 + 0 NA Intergenic L1M2a|LINE|L1 382713 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 11261 chr16 31130955 31131098 + 0 NA TTS (NM_002773) TTS (NM_002773) 4736 NM_002773 5652 Hs.75799 NM_002773 ENSG00000052344 PRSS8 CAP1|PROSTASIN protease, serine 8 protein-coding 5450 chr11 64970910 64971014 + 0 NA intron (NM_001318808, intron 1 of 11) intron (NM_001318808, intron 1 of 11) 1129 NM_001300803 283129 Hs.567793 NM_001037225 ENSG00000168070 MAJIN C11orf85 membrane anchored junction protein protein-coding 15281 chr2 29123699 29123803 + 0 NA intron (NM_024692, intron 2 of 15) L2a|LINE|L2 8325 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 29107 chr9 38620592 38620742 + 0 NA promoter-TSS (NR_027294) promoter-TSS (NR_027294) -7 NM_001331100 253650 Hs.644630 NM_147195 ENSG00000180071 ANKRD18A - ankyrin repeat domain 18A protein-coding 15491 chr2 46873766 46873870 + 0 NA Intergenic Intergenic 42050 NM_139279 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 24566 chr6 42556030 42556154 + 0 NA Intergenic MER51A|LTR|ERV1 -7930 NM_015255 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 419 chr1 26358919 26359031 + 0 NA Intergenic MIR|SINE|MIR -4845 NM_001039775 55057 Hs.128738 NM_017977 ENSG00000176092 AIM1L CRYBG2 absent in melanoma 1-like protein-coding 12925 chr17 71405205 71405309 + 0 NA Intergenic Intergenic -203078 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 29794 chr9 108094313 108094417 + 0 NA Intergenic MIRb|SINE|MIR -604645 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 18833 chr22 35431016 35431120 + 0 NA Intergenic Intergenic 30945 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 30665 chrX 47145110 47145268 + 0 NA promoter-TSS (NM_001204466) promoter-TSS (NM_001204466) 21 NM_019056 54539 Hs.521969 NM_019056 ENSG00000147123 NDUFB11 CI-ESSS|ESSS|NP17.3|Np15|P17.3 NADH:ubiquinone oxidoreductase subunit B11 protein-coding 27405 chr8 12547066 12547194 + 0 NA intron (NR_047662, intron 8 of 8) AluY|SINE|Alu 110117 NR_040092 100506990 Hs.656893 NR_040091 LOC100506990 - uncharacterized LOC100506990 ncRNA 2015 chr1 167442233 167442396 + 0 NA intron (NM_198053, intron 1 of 7) intron (NM_198053, intron 1 of 7) 76296 NM_198053 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 7073 chr12 53727511 53727644 + 0 NA promoter-TSS (NM_020898) promoter-TSS (NM_020898) -54 NM_001143682 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 27645 chr8 30083037 30083172 + 0 NA 5' UTR (NM_001284239, exon 1 of 5) 5' UTR (NM_001284239, exon 1 of 5) 104 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 3839 chr10 70403935 70404039 + 0 NA promoter-TSS (NM_004096) promoter-TSS (NM_004096) -118 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 6836 chr12 31959296 31959439 + 0 NA promoter-TSS (NM_018169) promoter-TSS (NM_018169) -52 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 KIAA1551 C12orf35|UTA2-1 KIAA1551 protein-coding 19052 chr22 50200787 50200891 + 0 NA promoter-TSS (NM_031454) promoter-TSS (NM_031454) -140 NM_031454 83642 Hs.365405 NM_031454 ENSG00000073169 SELENOO SELO selenoprotein O protein-coding 6706 chr12 18723856 18724032 + 0 NA intron (NM_001330774, intron 3 of 14) intron (NM_001330774, intron 3 of 14) 13565 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 9459 chr14 80621846 80621991 + 0 NA intron (NM_152446, intron 18 of 23) intron (NM_152446, intron 18 of 23) 317622 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 14500 chr19 42450445 42450571 + 0 NA intron (NR_073179, intron 1 of 1) intron (NR_073179, intron 1 of 1) -7460 NM_198477 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 13258 chr18 9913561 9913665 + 0 NA promoter-TSS (NM_003574) promoter-TSS (NM_003574) -345 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 13670 chr18 59923269 59923373 + 0 NA Intergenic Intergenic 23361 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 6398 chr11 133835246 133835350 + 0 NA Intergenic Intergenic 10240 NM_174927 219938 Hs.97541 NM_174927 ENSG00000166118 SPATA19 CT132|SPAS1|spergen1 spermatogenesis associated 19 protein-coding 26838 chr7 112770177 112770320 + 0 NA intron (NM_022484, intron 4 of 4) intron (NM_022484, intron 4 of 4) 20175 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 26148 chr7 43572614 43572718 + 0 NA Intergenic Intergenic -10427 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 2289 chr1 195721679 195721828 + 0 NA Intergenic LTR14C|LTR|ERVK 860728 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 12297 chr17 30116729 30116842 + 0 NA promoter-TSS (NM_001261467) promoter-TSS (NM_001261467) -22 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 18485 chr21 33383138 33383213 + 0 NA Intergenic Intergenic -19721 NM_001329128 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 3283 chr10 11823310 11823404 + 0 NA promoter-TSS (NM_153256) promoter-TSS (NM_153256) -41 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 14313 chr19 21396993 21397097 + 0 NA promoter-TSS (NM_175910) promoter-TSS (NM_175910) -74 NM_001076678 284443 Hs.656558 NM_145326 ENSG00000196268 ZNF493 - zinc finger protein 493 protein-coding 13698 chr18 62715010 62715114 + 0 NA promoter-TSS (NM_194449) promoter-TSS (NM_194449) -377 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 26807 chr7 108299313 108299393 + 0 NA intron (NM_001193583, intron 3 of 29) intron (NM_001193583, intron 3 of 29) -59183 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 19434 chr3 44886649 44886830 + 0 NA intron (NM_003241, intron 2 of 13) L2c|LINE|L2 12133 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 14573 chr19 45641391 45641555 + 0 NA promoter-TSS (NR_130728) promoter-TSS (NR_130728) -21 NR_130728 100287177 Hs.668611 NM_001242348 ENSG00000267757 EML2-AS1 C19orf83 EML2 antisense RNA 1 ncRNA 365 chr1 23980377 23980482 + 0 NA promoter-TSS (NM_001191005) promoter-TSS (NM_001191005) 34 NM_001191009 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 3637 chr10 45374795 45374899 + 0 NA intron (NM_001320862, intron 1 of 13).2 intron (NM_001320862, intron 1 of 13).2 681 NM_001320862 240 Hs.89499 NM_000698 ENSG00000012779 ALOX5 5-LO|5-LOX|5LPG|LOG5 arachidonate 5-lipoxygenase protein-coding 2730 chr1 219917888 219917992 + 0 NA intron (NR_046437, intron 3 of 3) AluSx|SINE|Alu 10711 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 3255 chr10 6659637 6659741 + 0 NA Intergenic L1M4|LINE|L1 24619 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 26965 chr7 127447420 127447488 + 0 NA Intergenic L1PA15-16|LINE|L1 -29429 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 17274 chr2 231702024 231702128 + 0 NA Intergenic Intergenic -6449 NM_002823 5757 Hs.459927 NM_002823 ENSG00000187514 PTMA TMSA prothymosin, alpha protein-coding 4632 chr10 132308012 132308116 + 0 NA promoter-TSS (NM_001318879) promoter-TSS (NM_001318879) -91 NM_173575 282974 Hs.469002 NM_173575 ENSG00000165752 STK32C PKE|YANK3 serine/threonine kinase 32C protein-coding 2021 chr1 167715513 167715617 + 0 NA Intergenic Intergenic -6385 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 3430 chr10 24174221 24174325 + 0 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -34518 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 15834 chr2 74507669 74507811 + 0 NA promoter-TSS (NM_032673) promoter-TSS (NM_032673) -46 NM_032673 84759 Hs.316750 NM_032673 ENSG00000115289 PCGF1 2010002K04Rik|NSPC1|RNF3A-2|RNF68 polycomb group ring finger 1 protein-coding 28118 chr8 85107090 85107224 + 0 NA promoter-TSS (NM_033402) promoter-TSS (NM_033402) 69 NM_033402 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 26666 chr7 98419025 98419167 + 0 NA Intergenic Intergenic -17981 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 25000 chr6 109440543 109440697 + 0 NA promoter-TSS (NM_003080) promoter-TSS (NM_003080) -108 NM_003080 6610 Hs.55235 NM_003080 ENSG00000135587 SMPD2 ISC1|NSMASE|NSMASE1 sphingomyelin phosphodiesterase 2 protein-coding 3318 chr10 14592198 14592302 + 0 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) 12168 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 19653 chr3 70281842 70281870 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 282112 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 5193 chr11 41522573 41522599 + 0 NA Intergenic Intergenic -62950 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 30577 chrX 24150462 24150615 + 0 NA promoter-TSS (NR_046657) promoter-TSS (NR_046657) 801 NM_003410 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein, X-linked protein-coding 24297 chr6 29516180 29516303 + 0 NA Intergenic L1M5|LINE|L1 -13165 NR_037179 100507362 Hs.99161 NR_037179 ENSG00000224582 LINC01015 - long intergenic non-protein coding RNA 1015 ncRNA 24145 chr6 18940935 18941035 + 0 NA Intergenic Intergenic 239495 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 11400 chr16 56607441 56607545 + 0 NA Intergenic Intergenic -1073 NM_005953 4502 Hs.534330 NM_005953 ENSG00000125148 MT2A MT2 metallothionein 2A protein-coding 3123 chr1 244864539 244864718 + 0 NA promoter-TSS (NM_004501) promoter-TSS (NM_004501) -103 NM_031844 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U protein-coding 8923 chr14 39266960 39267101 + 0 NA promoter-TSS (NR_038935) promoter-TSS (NR_038935) 31 NR_038935 100288846 Hs.509200 NR_038935 ENSG00000258940 LOC100288846 - uncharacterized LOC100288846 ncRNA 252 chr1 17233877 17233998 + 0 NA intron (NM_013358, intron 11 of 15) intron (NM_013358, intron 11 of 15) -15161 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3 peptidyl arginine deiminase 3 protein-coding 6684 chr12 15629239 15629362 + 0 NA intron (NM_004447, intron 18 of 20) intron (NM_004447, intron 18 of 20) 82956 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase, receptor type O protein-coding 31114 chrX 139739370 139739474 + 0 NA intron (NM_173694, intron 27 of 29) intron (NM_173694, intron 27 of 29) -31200 NM_001171876 4168 Hs.387262 NM_005369 ENSG00000101977 MCF2 ARHGEF21|DBL MCF.2 cell line derived transforming sequence protein-coding 7864 chr12 125183362 125183466 + 0 NA Intergenic Intergenic 118047 NM_001319839 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 12320 chr17 31859441 31859552 + 0 NA promoter-TSS (NM_018405) promoter-TSS (NM_018405) -189 NM_018405 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 27164 chr7 143331568 143331672 + 0 NA non-coding (NR_046453, exon 10 of 22) non-coding (NR_046453, exon 10 of 22) 15494 NR_046453 1180 Hs.121483 NM_000083 ENSG00000188037 CLCN1 CLC1 chloride voltage-gated channel 1 protein-coding 12541 chr17 43418934 43419068 + 0 NA Intergenic Intergenic 20016 NM_001661 379 Hs.183153 NM_001661 ENSG00000175906 ARL4D ARF4L|ARL6 ADP ribosylation factor like GTPase 4D protein-coding 3825 chr10 69449928 69450082 + 0 NA Intergenic Intergenic -1465 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 6667 chr12 14771031 14771251 + 0 NA promoter-TSS (NM_175054) promoter-TSS (NM_175054) -10 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 25542 chr7 1537301 1537427 + 0 NA intron (NM_002360, intron 1 of 2) intron (NM_002360, intron 1 of 2) 6632 NM_002360 7975 Hs.520612 NM_002360 ENSG00000198517 MAFK NFE2U|P18 MAF bZIP transcription factor K protein-coding 21379 chr4 55346284 55346356 + 0 NA promoter-TSS (NM_024592) promoter-TSS (NM_024592) 99 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 14056 chr19 9791610 9791714 + 0 NA Intergenic Intergenic -22928 NM_001077624 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 16099 chr2 108933737 108933757 + 0 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 55625 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 16208 chr2 119223768 119223864 + 0 NA promoter-TSS (NM_138637) promoter-TSS (NM_138637) 8 NM_018234 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 28379 chr8 104337058 104337162 + 0 NA Intergenic Intergenic -2686 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 16687 chr2 174614346 174614450 + 0 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) 20181 NM_003387 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 21632 chr4 101349805 101349909 + 0 NA TTS (NR_033874) TTS (NR_033874) 2080 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 26217 chr7 47291523 47291681 + 0 NA intron (NM_022748, intron 27 of 30) L3b|LINE|CR1 290542 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 25280 chr6 145814771 145814848 + 0 NA promoter-TSS (NR_038245) promoter-TSS (NR_038245) -24 NM_032145 84085 Hs.421095 NM_032145 ENSG00000118496 FBXO30 Fbx30 F-box protein 30 protein-coding 22955 chr5 102755995 102756099 + 0 NA intron (NM_001319943, intron 1 of 26) MIRc|SINE|MIR 1264 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 23941 chr6 5303405 5303509 + 0 NA intron (NM_006567, intron 1 of 6) intron (NM_006567, intron 1 of 6) 42131 NM_006567 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77 phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 29238 chr9 73271171 73271309 + 0 NA Intergenic Intergenic 119509 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 2463 chr1 204448659 204448894 + 0 NA intron (NM_002646, intron 15 of 33) intron (NM_002646, intron 15 of 33) -36959 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 105 chr1 7771150 7771383 + 0 NA promoter-TSS (NM_004781) promoter-TSS (NM_004781) -3 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 2493 chr1 205750179 205750376 + 0 NA promoter-TSS (NM_022731) promoter-TSS (NM_022731) -33 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 16072 chr2 105595743 105595847 + 0 NA intron (NR_038891, intron 3 of 3) intron (NR_038891, intron 3 of 3) 14764 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 13659 chr18 59662579 59662683 + 0 NA intron (NM_133459, intron 2 of 10) L2b|LINE|L2 34781 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 21190 chr4 13907517 13907638 + 0 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) -204391 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 6532 chr12 6779050 6779189 + 0 NA TTS (NM_002286) TTS (NM_002286) 6615 NM_002286 3902 Hs.409523 NM_002286 ENSG00000089692 LAG3 CD223 lymphocyte activating 3 protein-coding 4500 chr10 120965801 120965945 + 0 NA Intergenic Intergenic -114694 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 12555 chr17 44138271 44138407 + 0 NA Intergenic Intergenic -3563 NM_024032 78995 Hs.437059 NM_024032 ENSG00000125319 C17orf53 - chromosome 17 open reading frame 53 protein-coding 408 chr1 26112188 26112321 + 0 NA intron (NM_152835, intron 1 of 2) CpG 477 NM_152835 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 22251 chr5 14463808 14463955 + 0 NA intron (NR_134469, intron 36 of 56) intron (NR_134469, intron 36 of 56) -117901 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 FAM105A NET20 family with sequence similarity 105 member A protein-coding 23804 chr5 178204383 178204534 + 0 NA promoter-TSS (NM_031266) promoter-TSS (NM_031266) -49 NM_004499 3182 Hs.591731 NM_004499 ENSG00000197451 HNRNPAB ABBP1|HNRPAB heterogeneous nuclear ribonucleoprotein A/B protein-coding 22829 chr5 84435871 84436007 + 0 NA Intergenic MER11A|LTR|ERVK -51072 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 7434 chr12 93138109 93138265 + 0 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) -36179 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LOC102724933 - uncharacterized LOC102724933 ncRNA 11246 chr16 30875262 30875446 + 0 NA promoter-TSS (NR_039744) promoter-TSS (NR_039744) -31 NR_039744 100616231 NR_039744 ENSG00000265991 MIR4519 - microRNA 4519 ncRNA 12323 chr17 32127473 32127605 + 0 NA Intergenic Intergenic -14915 NM_001033568 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding 13460 chr18 39057848 39057952 + 0 NA Intergenic Intergenic 564275 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 2777 chr1 222754519 222754623 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 14887 NM_001324080 400823 Hs.697608 NM_207468 ENSG00000197520 FAM177B - family with sequence similarity 177 member B protein-coding 10852 chr16 1082623 1082727 + 0 NA Intergenic Intergenic 3894 NM_001053 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 24189 chr6 24359946 24359973 + 0 NA intron (NM_001195610, intron 1 of 10) CpG -1907 NM_016356 51473 Hs.61345 NM_016356 ENSG00000146038 DCDC2 DCDC2A|DFNB66|NPHP19|RU2|RU2S doublecortin domain containing 2 protein-coding 26734 chr7 101857077 101857220 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 39546 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 17537 chr20 5950482 5950628 + 0 NA promoter-TSS (NM_015939) promoter-TSS (NM_015939) 3 NM_001281467 51605 Hs.128791 NM_015939 ENSG00000089195 TRMT6 CGI-09|GCD10|Gcd10p tRNA methyltransferase 6 protein-coding 3601 chr10 41914631 41914765 + 0 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 453347 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 26101 chr7 40134572 40134687 + 0 NA promoter-TSS (NM_138701) promoter-TSS (NM_138701) 23 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 9091 chr14 58104918 58105022 + 0 NA intron (NM_001001872, intron 4 of 7) intron (NM_001001872, intron 4 of 7) 47269 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 C14orf37 UT2|c14_5376 chromosome 14 open reading frame 37 protein-coding 20299 chr3 141875915 141875940 + 0 NA promoter-TSS (NM_001679) promoter-TSS (NM_001679) -665 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 17255 chr2 230712729 230712794 + 0 NA promoter-TSS (NM_016289) promoter-TSS (NM_016289) -81 NM_016289 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 26347 chr7 66493492 66493596 + 0 NA promoter-TSS (NR_134573) promoter-TSS (NR_134573) -88 NR_134573 100289098 Hs.662276 NR_134570 ENSG00000237310 GS1-124K5.4 - uncharacterized LOC100289098 ncRNA 26098 chr7 39733535 39733639 + 0 NA promoter-TSS (NR_026999) promoter-TSS (NR_026999) 19 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 8867 chr14 35391068 35391221 + 0 NA Intergenic MIRb|SINE|MIR 13610 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 10064 chr15 50134845 50134949 + 0 NA Intergenic Intergenic -15675 NM_024837 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 29737 chr9 105244391 105244519 + 0 NA promoter-TSS (NM_001330731) promoter-TSS (NM_001330731) -150 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 28105 chr8 81783689 81783793 + 0 NA Intergenic Intergenic 51288 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 17372 chr2 238864348 238864498 + 0 NA intron (NM_001271893, intron 1 of 1) intron (NM_001271893, intron 1 of 1) 16391 NM_001271893 117581 Hs.422585 NM_057179 ENSG00000233608 TWIST2 AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39 twist family bHLH transcription factor 2 protein-coding 30850 chrX 78139558 78139733 + 0 NA promoter-TSS (NM_015975) promoter-TSS (NM_015975) 37 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 25013 chr6 110876271 110876419 + 0 NA intron (NM_001287216, intron 1 of 4) CpG 1561 NM_001634 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 27727 chr8 40350149 40350253 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger 196733 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 11591 chr16 71360632 71360715 + 0 NA intron (NR_027910, intron 1 of 9) intron (NR_027910, intron 1 of 9) 1960 NM_001740 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 3808 chr10 68527570 68527674 + 0 NA promoter-TSS (NM_001324312) promoter-TSS (NM_001324312) -99 NM_001324313 8034 Hs.180408 NM_152707 ENSG00000122912 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 member 16 protein-coding 6458 chr12 3217440 3217544 + 0 NA intron (NM_006675, intron 3 of 8) intron (NM_006675, intron 3 of 8) 140137 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 9097 chr14 58395905 58396082 + 0 NA promoter-TSS (NM_207377) promoter-TSS (NM_207377) 67 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 15938 chr2 88330198 88330323 + 0 NA Intergenic Intergenic 122275 NM_001135649 344167 Hs.716722 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 22143 chr5 784748 784948 + 0 NA Intergenic CpG 66138 NM_024786 79844 Hs.654874 NM_024786 ENSG00000188818 ZDHHC11 ZNF399 zinc finger DHHC-type containing 11 protein-coding 13043 chr17 76586966 76587108 + 0 NA promoter-TSS (NM_006456) promoter-TSS (NM_006456) -974 NM_006456 10610 Hs.592105 NM_006456 ENSG00000070731 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 24014 chr6 10355353 10355419 + 0 NA Intergenic Intergenic -56932 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 28521 chr8 119873652 119873775 + 0 NA promoter-TSS (NM_022783) promoter-TSS (NM_022783) 58 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 24440 chr6 35024899 35025003 + 0 NA intron (NM_015245, intron 11 of 23) intron (NM_015245, intron 11 of 23) 116459 NM_001261818 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 20145 chr3 130692587 130692671 + 0 NA intron (NM_014602, intron 13 of 19) L1MB7|LINE|L1 54223 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 21916 chr4 153205918 153205973 + 0 NA intron (NM_001302693, intron 1 of 2) intron (NM_001302693, intron 1 of 2) 1531 NM_015271 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 24474 chr6 36862237 36862378 + 0 NA intron (NM_016059, intron 2 of 3) intron (NM_016059, intron 2 of 3) -9563 NM_001286636 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP chromosome 6 open reading frame 89 protein-coding 12567 chr17 44775679 44775833 + 0 NA intron (NM_001318933, intron 17 of 26) CpG-11250 16577 NM_002390 4185 Hs.6088 NM_002390 ENSG00000073670 ADAM11 MDC ADAM metallopeptidase domain 11 protein-coding 21195 chr4 14908777 14908855 + 0 NA Intergenic L1MEd|LINE|L1 -20647 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 7039 chr12 52879778 52879882 + 0 NA Intergenic Intergenic 25254 NM_002273 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 27752 chr8 42503055 42503182 + 0 NA intron (NM_006749, intron 1 of 10) intron (NM_006749, intron 1 of 10) -1658 NM_001257180 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 23506 chr5 150264061 150264165 + 0 NA intron (NM_171825, intron 3 of 17) MER5A1|DNA|hAT-Charlie 25727 NM_015981 815 Hs.743976 NM_015981 ENSG00000070808 CAMK2A CAMKA calcium/calmodulin dependent protein kinase II alpha protein-coding 8546 chr13 105665357 105665523 + 0 NA Intergenic Intergenic -41390 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 22164 chr5 2758058 2758095 + 0 NA Intergenic Intergenic 5945 NR_122125 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 17265 chr2 231412456 231412594 + 0 NA Intergenic CpG 16901 NM_145236 93010 Hs.299329 NM_145236 ENSG00000156966 B3GNT7 beta3GnT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding 12851 chr17 64662391 64662392 + 0 NA promoter-TSS (NM_022739) promoter-TSS (NM_022739) -123 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 21722 chr4 114513044 114513190 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -85285 NM_001128174 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 8736 chr14 23556038 23556045 + 0 NA promoter-TSS (NM_001126339) promoter-TSS (NM_001126339) 59 NR_023314 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 28973 chr9 20358381 20358515 + 0 NA intron (NM_001286691, intron 8 of 10) intron (NM_001286691, intron 8 of 10) 52790 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 5444 chr11 64855043 64855240 + 0 NA intron (NM_001282444, intron 6 of 6) intron (NM_001282444, intron 6 of 6) -10572 NM_017525 55561 Hs.293590 NM_017525 ENSG00000171219 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma protein-coding 12888 chr17 67431770 67431854 + 0 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -39677 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 29456 chr9 87212764 87212800 + 0 NA Intergenic Intergenic 64138 NM_001001709 401535 Hs.657740 NM_001001709 C9orf170 - chromosome 9 open reading frame 170 protein-coding 18828 chr22 35257402 35257506 + 0 NA promoter-TSS (NR_027780) promoter-TSS (NR_027780) 2 NM_001003681 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 25216 chr6 138288846 138288950 + 0 NA intron (NM_020340, intron 17 of 33) Charlie29a|DNA|hAT-Charlie -70408 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 22881 chr5 91383424 91383528 + 0 NA promoter-TSS (NM_001329672) promoter-TSS (NM_001329672) -103 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 8118 chr13 36999238 36999402 + 0 NA promoter-TSS (NM_001142364) promoter-TSS (NM_001142364) 47 NM_001142364 29880 Hs.507769 NM_013338 ENSG00000120697 ALG5 bA421P11.2 ALG5, dolichyl-phosphate beta-glucosyltransferase protein-coding 17523 chr20 5153895 5153999 + 0 NA intron (NM_003818, intron 1 of 12) intron (NM_003818, intron 1 of 12) 27186 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 20538 chr3 159784152 159784256 + 0 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -15592 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 431 chr1 26771741 26771871 + 0 NA intron (NM_006015, intron 12 of 19) intron (NM_006015, intron 12 of 19) -16157 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 8337 chr13 72062788 72062856 + 0 NA Intergenic L1PA7|LINE|L1 -195630 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 23281 chr5 136132703 136132882 + 0 NA promoter-TSS (NM_005903) promoter-TSS (NM_005903) -53 NM_001001419 4090 Hs.167700 NM_005903 ENSG00000113658 SMAD5 DWFC|JV5-1|MADH5 SMAD family member 5 protein-coding 27128 chr7 141650007 141650144 + 0 NA intron (NM_018238, intron 14 of 15) intron (NM_018238, intron 14 of 15) 52078 NM_001080392 57189 Hs.521240 NM_001080392 ENSG00000257093 KIAA1147 LCHN|PRO2561 KIAA1147 protein-coding 18662 chr22 20956419 20956523 + 0 NA promoter-TSS (NR_110537) promoter-TSS (NR_110537) -621 NR_110537 101928891 Hs.648264 NR_110537 ENSG00000237476 LINC01637 - long intergenic non-protein coding RNA 1637 ncRNA 7191 chr12 59973651 59973728 + 0 NA Intergenic Intergenic 284352 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 11932 chr17 2955200 2955375 + 0 NA intron (NM_001330058, intron 3 of 24) L1MB5|LINE|L1 10608 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 12537 chr17 43357174 43357278 + 0 NA Intergenic PRIMA41-int|LTR|ERV1 31672 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 21427 chr4 70521853 70522063 + 0 NA intron (NM_001286731, intron 2 of 8) intron (NM_001286731, intron 2 of 8) 3386 NM_212557 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN UNQ689 amelotin protein-coding 7134 chr12 56333978 56334127 + 0 NA promoter-TSS (NM_001127460) promoter-TSS (NM_001127460) 1 NM_001166279 9924 Hs.273397 NM_014871 ENSG00000135473 PAN2 USP52 PAN2 poly(A) specific ribonuclease subunit protein-coding 16052 chr2 102488304 102488465 + 0 NA intron (NM_001011552, intron 2 of 11) MamRTE1|LINE|RTE-BovB 15081 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 4729 chr11 5285856 5286000 + 0 NA Intergenic Intergenic -15785 NM_005330 3046 Hs.655195 NM_005330 ENSG00000213931 HBE1 HBE hemoglobin subunit epsilon 1 protein-coding 11379 chr16 55021592 55021696 + 0 NA Intergenic L1PB2|LINE|L1 90445 NM_005853 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 28259 chr8 97764395 97764433 + 0 NA Intergenic Intergenic -11167 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 4329 chr10 109923377 109923516 + 0 NA promoter-TSS (NM_001324136) promoter-TSS (NM_001324136) 107 NM_001324131 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 21469 chr4 76782110 76782187 + 0 NA 3' UTR (NM_020859, exon 11 of 11) 3' UTR (NM_020859, exon 11 of 11) 115701 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 129 chr1 9300292 9300445 + 0 NA intron (NM_025106, intron 1 of 2) ERVL-B4-int|LTR|ERVL 7486 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 12220 chr17 21286502 21286606 + 0 NA intron (NM_145109, intron 1 of 11) intron (NM_145109, intron 1 of 11) -1482 NM_002756 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 14225 chr19 16719793 16719832 + 0 NA promoter-TSS (NM_001290355) promoter-TSS (NM_001290355) -164 NM_001007525 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 6077 chr11 111926910 111927044 + 0 NA promoter-TSS (NM_001278542) promoter-TSS (NM_001278542) -167 NM_001278542 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 13967 chr19 4872675 4872829 + 0 NA Intergenic Intergenic -4984 NM_001164189 10226 Hs.140452 NM_005817 ENSG00000105355 PLIN3 M6PRBP1|PP17|TIP47 perilipin 3 protein-coding 26448 chr7 76291762 76291889 + 0 NA Intergenic Intergenic -10733 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 12310 chr17 31269785 31269889 + 0 NA intron (NM_001042492, intron 36 of 57) MLT1K|LTR|ERVL-MaLR 27525 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 27979 chr8 67339631 67339735 + 0 NA intron (NM_006421, intron 1 of 38) intron (NM_006421, intron 1 of 38) 3994 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 20651 chr3 171809997 171810101 + 0 NA intron (NM_002662, intron 1 of 26) CpG 445 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 - phospholipase D1 protein-coding 12577 chr17 45161690 45161798 + 0 NA promoter-TSS (NM_001303440) promoter-TSS (NM_001303440) -101 NM_001303441 124790 Hs.56382 NM_144608 ENSG00000168517 HEXIM2 L3 hexamethylene bisacetamide inducible 2 protein-coding 9763 chr14 105709568 105709672 + 0 NA Intergenic Intergenic -36813 NR_046211 2003 Hs.744419 NR_046211 ELK2AP ELK2|ELK2.1|ELK2P1 ELK2A, member of ETS oncogene family, pseudogene pseudo 20725 chr3 178382558 178382662 + 0 NA Intergenic Intergenic -36591 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 17653 chr20 14234766 14234841 + 0 NA intron (NM_080676, intron 3 of 16) intron (NM_080676, intron 3 of 16) 102864 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 17191 chr2 225091458 225091562 + 0 NA Intergenic Intergenic -48897 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 168 chr1 11736067 11736171 + 0 NA promoter-TSS (NM_001040194) promoter-TSS (NM_001040194) 34 NM_020350 57085 Hs.464438 NM_020350 ENSG00000177674 AGTRAP ATRAP angiotensin II receptor associated protein protein-coding 12763 chr17 57948868 57948972 + 0 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 6403 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 13994 chr19 6092569 6092681 + 0 NA intron (NM_134433, intron 1 of 16) intron (NM_134433, intron 1 of 16) 18028 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 20520 chr3 158723158 158723305 + 0 NA intron (NM_002888, intron 1 of 3) intron (NM_002888, intron 1 of 3) 9255 NM_002888 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 18731 chr22 27046330 27046352 + 0 NA Intergenic Intergenic 14177 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 3447 chr10 24814926 24815054 + 0 NA Intergenic Intergenic -91322 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 14926 chr2 3558375 3558526 + 0 NA promoter-TSS (NR_038431) promoter-TSS (NR_038431) 63 NR_038430 100506054 Hs.606550 NR_038429 ENSG00000234171 RNASEH1-AS1 - RNASEH1 antisense RNA 1 ncRNA 25616 chr7 6077176 6077280 + 0 NA Intergenic Intergenic -17999 NM_014413 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 24999 chr6 109383020 109383124 + 0 NA promoter-TSS (NM_001142402) promoter-TSS (NM_001142402) -260 NM_001142401 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 20945 chr3 190374452 190374608 + 0 NA Intergenic Intergenic -13342 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 16182 chr2 113876717 113876875 + 0 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -13138 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 ARP3 actin related protein 3 homolog protein-coding 29866 chr9 111484212 111484224 + 0 NA exon (NM_001080398, exon 3 of 51) exon (NM_001080398, exon 3 of 51) 527 NM_001080398 23392 Hs.368255 NM_001080398 ENSG00000136813 KIAA0368 ECM29 KIAA0368 protein-coding 29175 chr9 71079618 71079722 + 0 NA intron (NM_001007471, intron 1 of 24) intron (NM_001007471, intron 1 of 24) 41928 NM_001007471 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 3156 chr1 247906715 247906822 + 0 NA Intergenic LTR37A|LTR|ERV1 11181 NM_001001957 343171 Hs.269151 NM_001001957 ENSG00000238243 OR2W3 OR2W3P|OR2W8P|OST718 olfactory receptor family 2 subfamily W member 3 protein-coding 12356 chr17 35063674 35063817 + 0 NA promoter-TSS (NM_001017368) promoter-TSS (NM_001017368) -5 NM_001017368 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 22790 chr5 80516937 80517041 + 0 NA intron (NM_205548, intron 3 of 5) MER44B|DNA|TcMar-Tigger 29008 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 3992 chr10 80471774 80471928 + 0 NA intron (NM_030927, intron 1 of 8) intron (NM_030927, intron 1 of 8) 17569 NM_001128309 81619 Hs.718943 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14 tetraspanin 14 protein-coding 10619 chr15 85794899 85795046 + 0 NA promoter-TSS (NM_022480) promoter-TSS (NM_022480) -14 NM_022480 64410 Hs.498371 NM_022480 ENSG00000183655 KLHL25 ENC-2|ENC2 kelch like family member 25 protein-coding 29035 chr9 33211684 33211793 + 0 NA Intergenic Intergenic -28426 NM_014471 27290 Hs.555934 NM_014471 ENSG00000122711 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 26645 chr7 96921327 96921474 + 0 NA Intergenic Intergenic -84578 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 20527 chr3 159419077 159419225 + 0 NA intron (NM_001197108, intron 1 of 6) MIRb|SINE|MIR 136505 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 11436 chr16 57894129 57894212 + 0 NA intron (NM_001286130, intron 31 of 32) L1MC4a|LINE|L1 76946 NM_001135639 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 2536 chr1 208132352 208132456 + 0 NA intron (NM_025179, intron 4 of 31) MIRb|SINE|MIR 111916 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 17198 chr2 226048774 226048878 + 0 NA Intergenic Intergenic -93968 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 4988 chr11 19742830 19742839 + 0 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) 17249 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 5856 chr11 93543370 93543499 + 0 NA promoter-TSS (NM_020179) promoter-TSS (NM_020179) -54 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 6875 chr12 40105971 40106162 + 0 NA promoter-TSS (NM_052885) promoter-TSS (NM_052885) -207 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 12420 chr17 38663273 38663377 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR 11609 NM_001130677 100170841 Hs.445574 NM_001130677 ENSG00000273604 EPOP C17orf96|PRR28 elongin BC and polycomb repressive complex 2 associated protein protein-coding 6098 chr11 113177060 113177164 + 0 NA intron (NM_001076682, intron 1 of 18) intron (NM_001076682, intron 1 of 18) 96789 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 9782 chr15 20340946 20341119 + 0 NA Intergenic (AGCCAGCCA)n|Simple_repeat|Simple_repeat 58288 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 16085 chr2 108145694 108145765 + 0 NA Intergenic Intergenic 72112 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 22827 chr5 84382287 84382488 + 0 NA intron (NM_005711, intron 1 of 10) CpG 2480 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 26827 chr7 112001299 112001403 + 0 NA intron (NM_014705, intron 2 of 51) Tigger7|DNA|TcMar-Tigger 192846 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 6679 chr12 15152942 15153046 + 0 NA intron (NR_046559, intron 1 of 2) intron (NR_046559, intron 1 of 2) 1071 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 8202 chr13 44714114 44714218 + 0 NA Intergenic Intergenic 95464 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 2259 chr1 190168271 190168375 + 0 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 307687 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 19011 chr22 45671946 45672050 + 0 NA 5' UTR (NM_001167621, exon 1 of 11) 5' UTR (NM_001167621, exon 1 of 11) 200 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 31176 chrX 153935009 153935181 + 0 NA promoter-TSS (NM_001256119) promoter-TSS (NM_001256119) 59 NM_001256120 8260 Hs.433291 NM_003491 ENSG00000102030 NAA10 ARD1|ARD1A|ARD1P|DXS707|MCOPS1|NATD|OGDNS|TE2 N(alpha)-acetyltransferase 10, NatA catalytic subunit protein-coding 11364 chr16 53732596 53732729 + 0 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 28699 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO, alpha-ketoglutarate dependent dioxygenase protein-coding 21738 chr4 118836048 118836184 + 0 NA promoter-TSS (NM_001318066) promoter-TSS (NM_001318066) 80 NM_001318066 9871 Hs.189641 NM_014822 ENSG00000150961 SEC24D CLCRP2 SEC24 homolog D, COPII coat complex component protein-coding 20567 chr3 161371538 161371589 + 0 NA 5' UTR (NM_001040100, exon 1 of 3) 5' UTR (NM_001040100, exon 1 of 3) 520 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 2212 chr1 183279398 183279502 + 0 NA intron (NM_015039, intron 7 of 10) intron (NM_015039, intron 7 of 10) 25424 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 7694 chr12 116277643 116277769 + 0 NA promoter-TSS (NM_015335) promoter-TSS (NM_015335) -520 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13 like protein-coding 10990 chr16 9665868 9665972 + 0 NA Intergenic Intergenic -210415 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 12235 chr17 27241736 27241797 + 0 NA Intergenic Intergenic 52230 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 24712 chr6 53652071 53652126 + 0 NA exon (NM_001003760, exon 3 of 3) exon (NM_001003760, exon 3 of 3) 13610 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 1886 chr1 159009846 159009952 + 0 NA promoter-TSS (NM_005531) promoter-TSS (NM_005531) 7 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 940 chr1 58592683 58592787 + 0 NA Intergenic Intergenic -15241 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 18121 chr20 46814923 46815032 + 0 NA Intergenic Intergenic -79647 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 12759 chr17 57875412 57875516 + 0 NA intron (NM_001292025, intron 3 of 10) intron (NM_001292025, intron 3 of 10) -25392 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 18845 chr22 36386110 36386159 + 0 NA intron (NM_002473, intron 1 of 40) intron (NM_002473, intron 1 of 40) 1933 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 685 chr1 39738733 39738837 + 0 NA promoter-TSS (NM_006112) promoter-TSS (NM_006112) -60 NR_036543 10450 Hs.524690 NM_006112 ENSG00000084072 PPIE CYP-33|CYP33 peptidylprolyl isomerase E protein-coding 29324 chr9 78602333 78602437 + 0 NA Intergenic Intergenic 305310 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 23946 chr6 6547188 6547333 + 0 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -41441 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 5313 chr11 59550548 59550675 + 0 NA Intergenic Intergenic 35698 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 2377 chr1 201507099 201507195 + 0 NA promoter-TSS (NM_001193571) promoter-TSS (NM_001193571) 112 NM_004078 1465 Hs.108080 NM_004078 ENSG00000159176 CSRP1 CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286 cysteine and glycine rich protein 1 protein-coding 7809 chr12 122752519 122752623 + 0 NA promoter-TSS (NM_003677) promoter-TSS (NM_003677) -250 NM_003677 8562 Hs.22393 NM_003677 ENSG00000139726 DENR DRP|DRP1|SMAP-3 density regulated re-initiation and release factor protein-coding 3975 chr10 79445819 79445955 + 0 NA promoter-TSS (NM_153367) promoter-TSS (NM_153367) -260 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 22879 chr5 91380302 91380382 + 0 NA promoter-TSS (NR_027435) promoter-TSS (NR_027435) -5 NR_027435 100129716 Hs.116364 NR_027435 ENSG00000281357 ARRDC3-AS1 - ARRDC3 antisense RNA 1 ncRNA 22120 chr4 186781711 186781809 + 0 NA Intergenic Intergenic -57927 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13441 chr18 35875719 35875823 + 0 NA Intergenic HUERS-P3-int|LTR|ERV1 29155 NR_029616 406963 NR_029616 ENSG00000207797 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 3937 chr10 76583725 76583829 + 0 NA Intergenic HAL1b|LINE|L1 -304267 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 24359 chr6 31403435 31403565 + 0 NA promoter-TSS (NM_000247) promoter-TSS (NM_000247) -67 NM_000247 100507436 Hs.130838 NM_000247 ENSG00000204520 MICA MIC-A|PERB11.1 MHC class I polypeptide-related sequence A protein-coding 3303 chr10 13660682 13660717 + 0 NA intron (NM_018027, intron 19 of 24) intron (NM_018027, intron 19 of 24) 46868 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 3895 chr10 73625914 73626055 + 0 NA Intergenic CpG 15773 NM_021245 58529 Hs.238756 NM_021245 ENSG00000177791 MYOZ1 CS-2|FATZ|MYOZ myozenin 1 protein-coding 21501 chr4 81021673 81021693 + 0 NA Intergenic Intergenic -9282 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 23683 chr5 168486339 168486502 + 0 NA promoter-TSS (NM_002887) promoter-TSS (NM_002887) -38 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 29251 chr9 74379868 74379972 + 0 NA intron (NR_121182, intron 2 of 2) intron (NR_121182, intron 2 of 2) 8389 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 28230 chr8 95100689 95100713 + 0 NA Intergenic Intergenic -27519 NR_132986 105375650 Hs.665518 NR_132986 ENSG00000245080 LOC105375650 - uncharacterized LOC105375650 ncRNA 18672 chr22 21867657 21867719 + 0 NA promoter-TSS (NM_138957) promoter-TSS (NM_138957) -8 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 1854 chr1 156572540 156572661 + 0 NA promoter-TSS (NM_178229) promoter-TSS (NM_178229) 4 NM_178229 128239 Hs.591495 NM_178229 ENSG00000183856 IQGAP3 - IQ motif containing GTPase activating protein 3 protein-coding 19847 chr3 109900953 109901093 + 0 NA Intergenic Intergenic 298195 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 29675 chr9 98575721 98575856 + 0 NA intron (NM_005458, intron 2 of 18) L2c|LINE|L2 133409 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099 gamma-aminobutyric acid type B receptor subunit 2 protein-coding 19024 chr22 46335657 46335750 + 0 NA non-coding (NR_104240, exon 1 of 11) non-coding (NR_104240, exon 1 of 11) 302 NM_001282783 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1|TRNT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 16189 chr2 117856707 117856801 + 0 NA Intergenic L2a|LINE|L2 42075 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 MrDb DEAD-box helicase 18 protein-coding 16683 chr2 174248697 174248801 + 0 NA promoter-TSS (NM_001011708) promoter-TSS (NM_001011708) -79 NM_013341 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 5874 chr11 94433149 94433291 + 0 NA intron (NM_001330347, intron 18 of 19) L2a|LINE|L2 -31797 NM_001330345 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 28960 chr9 19380244 19380369 + 0 NA promoter-TSS (NM_001010) promoter-TSS (NM_001010) -69 NM_001010 6194 Hs.408073 NM_001010 ENSG00000137154 RPS6 S6 ribosomal protein S6 protein-coding 4620 chr10 131315404 131315603 + 0 NA Intergenic Intergenic -3782 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 21508 chr4 82374091 82374259 + 0 NA promoter-TSS (NM_031369) promoter-TSS (NM_031369) -179 NM_002138 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 22695 chr5 71587231 71587335 + 0 NA promoter-TSS (NM_022132) promoter-TSS (NM_022132) -5 NM_022132 64087 Hs.604789 NM_022132 ENSG00000131844 MCCC2 MCCB methylcrotonoyl-CoA carboxylase 2 protein-coding 901 chr1 54406379 54406526 + 0 NA promoter-TSS (NM_001009955) promoter-TSS (NM_001009955) -57 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 20713 chr3 177591521 177591539 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 149609 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 2191 chr1 182391318 182391451 + 0 NA promoter-TSS (NM_001033056) promoter-TSS (NM_001033056) 20 NM_001033056 2752 Hs.132016 NM_002065 ENSG00000135821 GLUL GLNS|GS|PIG43|PIG59 glutamate-ammonia ligase protein-coding 28482 chr8 118035193 118035297 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 76574 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 25163 chr6 132814232 132814450 + 0 NA promoter-TSS (NM_001016) promoter-TSS (NM_001016) -228 NM_001016 6206 Hs.546289 NM_001016 ENSG00000112306 RPS12 S12 ribosomal protein S12 protein-coding 10830 chr15 101637714 101637818 + 0 NA intron (NM_001308026, intron 5 of 5) AluJb|SINE|Alu 14625 NM_078474 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 12382 chr17 35809337 35809491 + 0 NA promoter-TSS (NM_003487) promoter-TSS (NM_003487) -41 NM_003487 8148 Hs.402752 NM_003487 ENSG00000270647 TAF15 Npl3|RBP56|TAF2N|TAFII68 TATA-box binding protein associated factor 15 protein-coding 23642 chr5 160210061 160210158 + 0 NA intron (NM_001040442, intron 1 of 5) intron (NM_001040442, intron 1 of 5) 11068 NM_001040442 2172 Hs.519719 NM_001445 ENSG00000170231 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6 protein-coding 1056 chr1 66436630 66436726 + 0 NA Intergenic MIR3|SINE|MIR 82300 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 11299 chr16 48158487 48158591 + 0 NA Intergenic MER39|LTR|ERV1 -11769 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 23682 chr5 168472511 168472615 + 0 NA TTS (NM_001161661) TTS (NM_001161661) -13895 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 22009 chr4 170090093 170090315 + 0 NA promoter-TSS (NM_016228) promoter-TSS (NM_016228) 17 NM_001286682 51166 Hs.529735 NM_016228 ENSG00000109576 AADAT KAT2|KATII|KYAT2 aminoadipate aminotransferase protein-coding 6540 chr12 6891247 6891335 + 0 NA Intergenic CpG -1933 NR_135083 105369632 Hs.670096 NR_135083 ENSG00000111671 LOC105369632 - uncharacterized LOC105369632 ncRNA 29837 chr9 109453532 109453636 + 0 NA intron (NM_001145368, intron 5 of 24) intron (NM_001145368, intron 5 of 24) -2200 NM_001145370 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 26337 chr7 65269295 65269416 + 0 NA Intergenic Intergenic -104444 NM_152626 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 9558 chr14 91417605 91417709 + 0 NA exon (NM_001080414, exon 1 of 30) exon (NM_001080414, exon 1 of 30) 187 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 27026 chr7 131895810 131895894 + 0 NA Intergenic Intergenic -14368 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 4285 chr10 103781512 103781535 + 0 NA intron (NM_014631, intron 2 of 13) MLT1J2|LTR|ERVL-MaLR 34744 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 28996 chr9 23686356 23686460 + 0 NA Intergenic Intergenic -14009 NR_121602 101929563 Hs.533220 NR_121602 LOC101929563 - uncharacterized LOC101929563 ncRNA 16136 chr2 111946815 111947003 + 0 NA intron (NM_006343, intron 3 of 18) intron (NM_006343, intron 3 of 18) 48295 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 29515 chr9 90914994 90915084 + 0 NA Intergenic Intergenic 87619 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 1473 chr1 109263381 109263485 + 0 NA intron (NM_001408, intron 8 of 33) intron (NM_001408, intron 8 of 33) 13414 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 5066 chr11 28759500 28759645 + 0 NA Intergenic Intergenic -282024 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 24600 chr6 43630250 43630354 + 0 NA intron (NM_001003690, intron 1 of 3) intron (NM_001003690, intron 1 of 3) 760 NM_001003690 9587 Hs.122346 NM_014628 ENSG00000124688 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 881 chr1 52927225 52927275 + 0 NA promoter-TSS (NM_002979) promoter-TSS (NM_002979) 21 NM_002979 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 20912 chr3 189389513 189389617 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -148971 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 22690 chr5 69502733 69502882 + 0 NA intron (NM_001205254, intron 1 of 8) intron (NM_001205254, intron 1 of 8) -1370 NM_001205255 100506658 Hs.592605 NM_002538 ENSG00000197822 OCLN BLCPMG|PPP1R115 occludin protein-coding 22197 chr5 9467646 9467759 + 0 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -43631 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 3186 chr10 3095410 3095514 + 0 NA intron (NM_001242339, intron 3 of 23) MARNA|DNA|TcMar-Mariner -9147 NM_001323070 5214 Hs.26010 NM_002627 ENSG00000067057 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 19939 chr3 115784315 115784473 + 0 NA Intergenic CpG 161090 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 17632 chr20 13009136 13009204 + 0 NA 5' UTR (NM_018327, exon 1 of 12) 5' UTR (NM_018327, exon 1 of 12) 191 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 405 chr1 26035388 26035492 + 0 NA 3' UTR (NM_004455, exon 11 of 11) 3' UTR (NM_004455, exon 11 of 11) 10698 NM_001004434 7780 Hs.143545 NM_032513 ENSG00000158014 SLC30A2 PP12488|TNZD|ZNT2|ZnT-2 solute carrier family 30 member 2 protein-coding 21963 chr4 161714185 161714289 + 0 NA intron (NM_020116, intron 6 of 15) intron (NM_020116, intron 6 of 15) -308496 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 6092 chr11 112290226 112290244 + 0 NA intron (NR_126004, intron 1 of 3) CpG 19486 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LOC283140 - uncharacterized LOC283140 ncRNA 8172 chr13 41961064 41961194 + 0 NA promoter-TSS (NM_015058) promoter-TSS (NM_015058) -40 NR_039974 100507240 Hs.147766 NR_039974 ENSG00000278338 VWA8-AS1 - VWA8 antisense RNA 1 (head to head) ncRNA 8045 chr13 29924189 29924331 + 0 NA intron (NR_047501, intron 1 of 1) intron (NR_047501, intron 1 of 1) 2391 NR_047501 100861573 Hs.585619 NR_047501 ENSG00000224405 LINC00572 - long intergenic non-protein coding RNA 572 ncRNA 11666 chr16 75938928 75938936 + 0 NA Intergenic LTR18B|LTR|ERVL 291195 NR_144545 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 9835 chr15 33013974 33014124 + 0 NA intron (NM_001277313, intron 6 of 20) intron (NM_001277313, intron 6 of 20) 53983 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 9354 chr14 73740928 73741062 + 0 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -17752 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 9396 chr14 75453200 75453341 + 0 NA intron (NM_001135049, intron 2 of 3) intron (NM_001135049, intron 2 of 3) 21136 NM_001135049 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 22741 chr5 75511692 75511840 + 0 NA promoter-TSS (NM_005713) promoter-TSS (NM_005713) 16 NM_016218 51426 Hs.135756 NM_016218 ENSG00000122008 POLK DINB1|DINP|POLQ DNA polymerase kappa protein-coding 7042 chr12 52925223 52925327 + 0 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) 1194 NM_001256282 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13708 chr18 63472554 63472712 + 0 NA Intergenic Intergenic -4278 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 12429 chr17 39036130 39036253 + 0 NA intron (NR_033753, intron 2 of 4) intron (NR_033753, intron 2 of 4) 6285 NR_033753 342666 Hs.129645 NM_198502 ENSG00000214553 LRRC37A11P LRRC37F leucine rich repeat containing 37 member A11, pseudogene pseudo 28787 chr8 142235083 142235187 + 0 NA intron (NM_145003, intron 12 of 13) intron (NM_145003, intron 12 of 13) 36779 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 24528 chr6 41073016 41073169 + 0 NA promoter-TSS (NM_001329685) promoter-TSS (NM_001329685) 124 NM_021705 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 21075 chr3 197490192 197490296 + 0 NA Intergenic Intergenic 65743 NM_004051 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 21717 chr4 113761506 113761610 + 0 NA 5' UTR (NM_001221, exon 1 of 19) 5' UTR (NM_001221, exon 1 of 19) 369 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 29444 chr9 86551042 86551146 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger -196607 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 ZCCHC6 PAPD6|TUT7 zinc finger CCHC-type containing 6 protein-coding 28965 chr9 19409514 19409618 + 0 NA intron (NM_001010887, intron 1 of 5) intron (NM_001010887, intron 1 of 5) 639 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 28914 chr9 6102703 6102807 + 0 NA Intergenic HERVL-int|LTR|ERVL -87115 NM_012416 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 27071 chr7 136923288 136923392 + 0 NA intron (NR_046103, intron 2 of 3) intron (NR_046103, intron 2 of 3) 20173 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 19913 chr3 113746667 113746821 + 0 NA promoter-TSS (NM_025146) promoter-TSS (NM_025146) -275 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ATP6A1|ATP6V1A1|HO68|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 27930 chr8 61721551 61721655 + 0 NA Intergenic Intergenic 6815 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 392 chr1 25430183 25430302 + 0 NA promoter-TSS (NM_001282564) promoter-TSS (NM_001282564) -616 NM_001282564 55219 Hs.189782 NM_018202 ENSG00000204178 TMEM57 MACOILIN transmembrane protein 57 protein-coding 30027 chr9 120935461 120935586 + 0 NA Intergenic Intergenic -6350 NM_001190945 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding 13155 chr17 82106363 82106509 + 0 NA intron (NM_198082, intron 16 of 16) intron (NM_198082, intron 16 of 16) -8206 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 7484 chr12 97837565 97837669 + 0 NA Intergenic MIRc|SINE|MIR -81100 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 21864 chr4 145481737 145481881 + 0 NA promoter-TSS (NM_005900) promoter-TSS (NM_005900) 10 NM_005900 4086 Hs.604588 NM_005900 ENSG00000170365 SMAD1 BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 SMAD family member 1 protein-coding 30041 chr9 121320245 121320399 + 0 NA intron (NM_001127663, intron 11 of 18) intron (NM_001127663, intron 11 of 18) 20521 NM_000177 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 27813 chr8 52282738 52282842 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 88428 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 2254 chr1 187842956 187843060 + 0 NA Intergenic LTR18A|LTR|ERVL 399380 NR_132374 106144535 Hs.568709 NR_132374 ENSG00000231599 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 5530 chr11 66709818 66709953 + 0 NA intron (NM_006946, intron 9 of 36) intron (NM_006946, intron 9 of 36) 11514 NM_006946 6712 Hs.26915 NM_006946 ENSG00000173898 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin beta, non-erythrocytic 2 protein-coding 10375 chr15 70375159 70375344 + 0 NA Intergenic Intergenic 211355 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LOC101929151 - uncharacterized LOC101929151 ncRNA 13546 chr18 49017269 49017373 + 0 NA Intergenic Intergenic 32447 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 15277 chr2 28993652 28993790 + 0 NA intron (NM_199280, intron 1 of 19) (GGCTG)n|Simple_repeat|Simple_repeat 12423 NM_199280 165186 Hs.525977 NM_199280 ENSG00000189350 FAM179A - family with sequence similarity 179 member A protein-coding 9693 chr14 102028865 102028984 + 0 NA intron (NM_001376, intron 48 of 77) MER58A|DNA|hAT-Charlie 58251 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 15343 chr2 36403804 36403948 + 0 NA intron (NM_016441, intron 2 of 16) L2|LINE|L2 47649 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 29619 chr9 95875971 95876030 + 0 NA promoter-TSS (NR_023390) promoter-TSS (NR_023390) -23 NR_023390 100128782 Hs.494549 NR_023389 ENSG00000175611 LINC00476 C9orf130|NAG11|NAG12 long intergenic non-protein coding RNA 476 ncRNA 24763 chr6 69796175 69796305 + 0 NA intron (NM_018368, intron 1 of 15) intron (NM_018368, intron 1 of 15) 917 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 20900 chr3 188900396 188900536 + 0 NA Intergenic Intergenic 47173 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 813 chr1 46183210 46183314 + 0 NA intron (NM_005727, intron 3 of 8) intron (NM_005727, intron 3 of 8) -6767 NM_001328655 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 24607 chr6 44041741 44041845 + 0 NA intron (NR_125864, intron 1 of 4) intron (NR_125864, intron 1 of 4) 32859 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 9770 chr14_GL000225v1_random 74813 74890 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 25239 chr6 141549127 141549295 + 0 NA Intergenic L1M4a2|LINE|L1 539588 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 6810 chr12 29380632 29380766 + 0 NA intron (NM_016570, intron 1 of 13) CpG 511 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 30175 chr9 128203259 128203352 + 0 NA promoter-TSS (NM_004408) promoter-TSS (NM_004408) -50 NM_001288738 1759 Hs.522413 NM_004408 ENSG00000106976 DNM1 DNM|EIEE31 dynamin 1 protein-coding 23563 chr5 153562312 153562468 + 0 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 70218 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 1820 chr1 155610073 155610217 + 0 NA promoter-TSS (NM_001256532) promoter-TSS (NM_001256532) -25 NR_046295 55154 Hs.656547 NM_018116 ENSG00000125459 MSTO1 LST005|MST misato 1, mitochondrial distribution and morphology regulator protein-coding 13498 chr18 45793339 45793488 + 0 NA Intergenic MIRb|SINE|MIR -32167 NM_213602 284266 Hs.287692 NM_213602 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig like lectin 15 protein-coding 27970 chr8 66535804 66535908 + 0 NA Intergenic Intergenic 42600 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 C8orf46 - chromosome 8 open reading frame 46 protein-coding 14665 chr19 48872274 48872342 + 0 NA promoter-TSS (NM_014330) promoter-TSS (NM_014330) -84 NM_014330 23645 Hs.631593 NM_014330 ENSG00000087074 PPP1R15A GADD34 protein phosphatase 1 regulatory subunit 15A protein-coding 17366 chr2 238320387 238320538 + 0 NA promoter-TSS (NM_001139490) promoter-TSS (NM_001139490) -82 NM_001139490 26146 Hs.631898 NM_015650 ENSG00000204104 TRAF3IP1 IFT54|MIP-T3|MIPT3|SLSN9 TRAF3 interacting protein 1 protein-coding 10392 chr15 71136538 71136632 + 0 NA Intergenic Intergenic -4864 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 28143 chr8 86350728 86350832 + 0 NA intron (NM_007013, intron 1 of 24) intron (NM_007013, intron 1 of 24) 8015 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 9222 chr14 65131462 65131596 + 0 NA Intergenic Intergenic -28834 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 23614 chr5 158382579 158382724 + 0 NA intron (NR_109888, intron 1 of 6) MLT1H|LTR|ERVL-MaLR 27122 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LOC101927697 - uncharacterized LOC101927697 ncRNA 19021 chr22 46085920 46085943 + 0 NA promoter-TSS (NR_027033) promoter-TSS (NR_027033) -66 NR_027033 400931 Hs.235838 NM_207477 ENSG00000197182 MIRLET7BHG linc-Ppara MIRLET7B host gene ncRNA 8343 chr13 73090605 73090709 + 0 NA Intergenic Intergenic 31865 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 18403 chr20 63707828 63707932 + 0 NA promoter-TSS (NM_001195654) promoter-TSS (NM_001195654) -27 NM_001267548 10139 Hs.389277 NM_003224 ENSG00000101246 ARFRP1 ARL18|ARP|Arp1 ADP ribosylation factor related protein 1 protein-coding 791 chr1 44800075 44800191 + 0 NA promoter-TSS (NM_004073) promoter-TSS (NM_004073) -92 NM_004073 1263 Hs.632415 NM_004073 ENSG00000173846 PLK3 CNK|FNK|PLK-3|PRK polo like kinase 3 protein-coding 25059 chr6 117174992 117175096 + 0 NA Intergenic MLT2B4|LTR|ERVL -90514 NM_182645 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 16740 chr2 178523104 178523208 + 0 NA promoter-TSS (NR_038271) promoter-TSS (NR_038271) -35 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 13003 chr17 75393911 75394097 + 0 NA intron (NM_203506, intron 1 of 4) intron (NM_203506, intron 1 of 4) 11704 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 25221 chr6 138795962 138796157 + 0 NA promoter-TSS (NM_001077706) promoter-TSS (NM_001077706) -52 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 20871 chr3 186753017 186753169 + 0 NA Intergenic Intergenic -30479 NM_001967 1974 Hs.518475 NM_001967 ENSG00000156976 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 2231 chr1 184828189 184828366 + 0 NA intron (NM_052966, intron 6 of 13) intron (NM_052966, intron 6 of 13) -73370 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 18615 chr22 17920360 17920554 + 0 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) -13571 NM_001136004 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 30587 chrX 27966623 27966727 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 14774 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 916 chr1 55215403 55215432 + 0 NA promoter-TSS (NM_015306) promoter-TSS (NM_015306) 9 NR_038320 100507634 Hs.735428 NR_038320 LOC100507634 - uncharacterized LOC100507634 ncRNA 5904 chr11 95364803 95364907 + 0 NA Intergenic L2|LINE|L2 -132314 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 19994 chr3 120112034 120112066 + 0 NA Intergenic Intergenic -17633 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 18626 chr22 19122510 19122549 + 0 NA promoter-TSS (NM_001184781) promoter-TSS (NM_001184781) -75 NM_001184781 9993 Hs.517357 NM_005137 ENSG00000070413 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 12933 chr17 71900995 71901099 + 0 NA Intergenic Intergenic 124932 NR_110876 102723505 Hs.547482 NR_110876 ENSG00000228639 LINC02095 - long intergenic non-protein coding RNA 2095 ncRNA 11576 chr16 70381396 70381528 + 0 NA 3' UTR (NM_006927, exon 7 of 7) 3' UTR (NM_006927, exon 7 of 7) 34633 NM_001320525 55308 Hs.656037 NM_018332 ENSG00000168872 DDX19A DDX19-DDX19L|DDX19L DEAD-box helicase 19A protein-coding 12392 chr17 36545452 36545605 + 0 NA intron (NM_024835, intron 1 of 13) CpG 640 NM_024835 79893 Hs.514116 NM_024835 ENSG00000278311 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 24192 chr6 24451772 24451899 + 0 NA intron (NM_001503, intron 14 of 24) intron (NM_001503, intron 14 of 24) 37787 NM_001503 2822 Hs.533291 NM_001503 ENSG00000112293 GPLD1 GPIPLD|GPIPLDM|PIGPLD|PIGPLD1|PLD glycosylphosphatidylinositol specific phospholipase D1 protein-coding 10013 chr15 44728919 44729068 + 0 NA promoter-TSS (NR_125376) promoter-TSS (NR_125376) 5 NR_125376 100419583 Hs.489254 NR_125376 LOC100419583 - ring finger protein 4 pseudogene pseudo 8120 chr13 37059688 37059845 + 0 NA promoter-TSS (NM_001278482) promoter-TSS (NM_001278482) -53 NM_001014286 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 4476 chr10 119542709 119542813 + 0 NA promoter-TSS (NM_001005339) promoter-TSS (NM_001005339) -51 NM_001005339 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G-protein signaling 10 protein-coding 8764 chr14 24396354 24396366 + 0 NA Intergenic LTR88b|LTR|Gypsy? -2426 NM_025081 57523 Hs.288348 NM_025081 ENSG00000205978 NYNRIN CGIN1|KIAA1305 NYN domain and retroviral integrase containing protein-coding 1561 chr1 115470160 115470264 + 0 NA Intergenic Intergenic -131976 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 19374 chr3 39038287 39038419 + 0 NA Intergenic Intergenic -13633 NR_144400 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 22267 chr5 16465774 16465918 + 0 NA promoter-TSS (NM_033414) promoter-TSS (NM_033414) -61 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 30855 chrX 78653438 78653485 + 0 NA Intergenic Intergenic 5867 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 ZCCHC5 Mar3|Mart3|ZHC5 zinc finger CCHC-type containing 5 protein-coding 24208 chr6 25992557 25992701 + 0 NA Intergenic CpG 25183 NM_005325 3024 Hs.150206 NM_005325 ENSG00000124610 HIST1H1A H1.1|H1A|H1F1|HIST1 histone cluster 1 H1 family member a protein-coding 6316 chr11 128095710 128095804 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 426553 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 17501 chr20 4135689 4135864 + 0 NA Intergenic Intergenic -13003 NM_175840 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 3731 chr10 59967112 59967177 + 0 NA Intergenic Intergenic -6231 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 3216 chr10 5317769 5317873 + 0 NA Intergenic Intergenic -47188 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 19039 chr22 47329025 47329140 + 0 NA Intergenic Intergenic -16489 NR_144462 339685 Hs.434351 NR_038922 LOC339685 - uncharacterized LOC339685 ncRNA 15845 chr2 74893446 74893531 + 0 NA TTS (NM_000189) TTS (NM_000189) -15643 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 11008 chr16 10871197 10871301 + 0 NA Intergenic Intergenic -5949 NM_001286402 4261 Hs.592051 NM_000246 ENSG00000179583 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II major histocompatibility complex transactivator protein-coding 23418 chr5 143659730 143659864 + 0 NA Intergenic Intergenic -20063 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 4234 chr10 101353932 101353945 + 0 NA promoter-TSS (NM_001256856) promoter-TSS (NM_001256856) -95 NM_001256856 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 6670 chr12 14803538 14803664 + 0 NA promoter-TSS (NM_016312) promoter-TSS (NM_016312) 29 NM_175874 144608 Hs.659951 NM_175874 ENSG00000182993 C12orf60 - chromosome 12 open reading frame 60 protein-coding 20082 chr3 126475833 126475981 + 0 NA promoter-TSS (NM_025112) promoter-TSS (NM_025112) 12 NR_104249 79364 Hs.440049 NM_025112 ENSG00000070476 ZXDC ZXDL ZXD family zinc finger C protein-coding 1239 chr1 87131841 87131991 + 0 NA promoter-TSS (NR_026985) promoter-TSS (NR_026985) -10 NR_026987 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 11029 chr16 11916099 11916112 + 0 NA promoter-TSS (NM_002094) promoter-TSS (NM_002094) -137 NM_002094 2935 Hs.528780 NM_002094 ENSG00000103342 GSPT1 551G9.2|ETF3A|GST1|eRF3a G1 to S phase transition 1 protein-coding 30476 chrX 9463036 9463170 + 0 NA promoter-TSS (NM_001139467) promoter-TSS (NM_001139467) -192 NM_001139468 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1X-linked protein-coding 14829 chr19 56140699 56140803 + 0 NA promoter-TSS (NM_001253792) promoter-TSS (NM_001253792) -415 NM_001253792 55311 Hs.24545 NM_018337 ENSG00000167685 ZNF444 EZF-2|EZF2|ZSCAN17 zinc finger protein 444 protein-coding 7600 chr12 107237380 107237484 + 0 NA Intergenic Intergenic -80988 NM_001018072 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 25743 chr7 16770813 16770917 + 0 NA intron (NM_014399, intron 1 of 5) L1MEd|LINE|L1 17139 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 28982 chr9 21802566 21802670 + 0 NA promoter-TSS (NM_002451) promoter-TSS (NM_002451) -18 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 18005 chr20 40490050 40490154 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 199138 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 20243 chr3 138434390 138434527 + 0 NA promoter-TSS (NM_031913) promoter-TSS (NM_031913) -115 NR_136409 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 19105 chr3 5187553 5187703 + 0 NA promoter-TSS (NM_014674) promoter-TSS (NM_014674) -46 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 1809 chr1 155208577 155208681 + 0 NA promoter-TSS (NM_198883) promoter-TSS (NM_198883) -70 NM_198883 4580 Hs.490874 NM_002455 ENSG00000173171 MTX1 MTX|MTXN metaxin 1 protein-coding 2744 chr1 220733119 220733223 + 0 NA Intergenic Intergenic -15075 NM_001317338 54996 Hs.369042 NM_017898 ENSG00000117791 MARC2 MOSC2 mitochondrial amidoxime reducing component 2 protein-coding 26917 chr7 121530513 121530679 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -134228 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 6816 chr12 30796184 30796274 + 0 NA intron (NR_040245, intron 1 of 4) CpG 548 NR_040245 100287314 Hs.355210 NR_040245 ENSG00000235884 LINC00941 - long intergenic non-protein coding RNA 941 ncRNA 9848 chr15 34154995 34155045 + 0 NA intron (NM_024713, intron 2 of 9) (TGACTAAGGA)n|Simple_repeat|Simple_repeat 52947 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 19315 chr3 32422252 32422356 + 0 NA intron (NM_181472, intron 1 of 3) intron (NM_181472, intron 1 of 3) 30633 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 23430 chr5 145936511 145936682 + 0 NA promoter-TSS (NM_152550) promoter-TSS (NM_152550) 33 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 22673 chr5 68549234 68549436 + 0 NA Intergenic Intergenic 256767 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 3199 chr10 3852579 3852634 + 0 NA Intergenic Intergenic 18656 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 5801 chr11 86592925 86593077 + 0 NA intron (NM_001014811, intron 1 of 13) MIRb|SINE|MIR 79197 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 29544 chr9 92147337 92147488 + 0 NA intron (NR_027341, intron 1 of 3) intron (NR_027341, intron 1 of 3) 5945 NR_027341 158314 Hs.149940 NR_027341 LINC00475 C9orf44 long intergenic non-protein coding RNA 475 ncRNA 60 chr1 3717402 3717550 + 0 NA intron (NM_001204186, intron 4 of 10) intron (NM_001204186, intron 4 of 10) 19430 NM_001204192 7161 Hs.192132 NM_005427 ENSG00000078900 TP73 P73 tumor protein p73 protein-coding 5287 chr11 57900462 57900619 + 0 NA Intergenic Intergenic -123341 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 14862 chr19 58183708 58183884 + 0 NA intron (NM_016324, intron 1 of 4) intron (NM_016324, intron 1 of 4) 807 NM_001278734 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 18360 chr20 60139159 60139245 + 0 NA intron (NR_046099, intron 1 of 4) intron (NR_046099, intron 1 of 4) 710 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 691 chr1 39982093 39982197 + 0 NA Intergenic L3|LINE|CR1 27033 NM_032793 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 1067 chr1 67500514 67500618 + 0 NA Intergenic Intergenic -70126 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 1400 chr1 99969936 99970045 + 0 NA promoter-TSS (NM_001271685) promoter-TSS (NM_001271685) 201 NM_001271684 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 2615 chr1 211705502 211705637 + 0 NA Intergenic Intergenic -29939 NM_001204182 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 9847 chr15 34101873 34102081 + 0 NA promoter-TSS (NM_020154) promoter-TSS (NM_020154) -96 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 27748 chr8 42338296 42338400 + 0 NA promoter-TSS (NM_002690) promoter-TSS (NM_002690) -107 NM_002690 5423 Hs.654484 NM_002690 ENSG00000070501 POLB - DNA polymerase beta protein-coding 20283 chr3 141295034 141295191 + 0 NA TTS (NM_001037172) TTS (NM_001037172) -29101 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 25193 chr6 136550419 136550563 + 0 NA 5' UTR (NM_001198616, exon 1 of 17) 5' UTR (NM_001198616, exon 1 of 17) 328 NM_001198617 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 17104 chr2 218568292 218568406 + 0 NA promoter-TSS (NM_020935) promoter-TSS (NM_020935) 12 NM_020935 57695 Hs.166068 NM_020935 ENSG00000135913 USP37 - ubiquitin specific peptidase 37 protein-coding 3134 chr1 246503415 246503586 + 0 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) 3842 NM_001167740 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 30233 chr9 129607615 129607743 + 0 NA Intergenic Intergenic -1205 NM_001286796 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 17595 chr20 10715130 10715234 + 0 NA Intergenic MIRc|SINE|MIR -37908 NR_110611 101929395 Hs.244862 NR_110611 ENSG00000224961 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 29214 chr9 72477171 72477300 + 0 NA Intergenic Intergenic -44566 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 4735 chr11 5620747 5620851 + 0 NA intron (NM_001003827, intron 1 of 7) intron (NM_001003827, intron 1 of 7) 855 NM_001003827 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 19769 chr3 101036463 101036604 + 0 NA Intergenic ERVL-int|LTR|ERVL -43043 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 3464 chr10 26487675 26487680 + 0 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 49340 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 12214 chr17 21099347 21099497 + 0 NA Intergenic Intergenic 23866 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 13470 chr18 43719482 43719543 + 0 NA Intergenic L1PA10|LINE|L1 -441862 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 17972 chr20 37711022 37711126 + 0 NA intron (NM_030877, intron 1 of 15) intron (NM_030877, intron 1 of 15) 17119 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 14000 chr19 6372632 6372757 + 0 NA 5' UTR (NM_032306, exon 1 of 4) 5' UTR (NM_032306, exon 1 of 4) 261 NM_032306 84266 Hs.111099 NM_032306 ENSG00000125652 ALKBH7 ABH7|SPATA11|UNQ6002 alkB homolog 7 protein-coding 27078 chr7 137990453 137990557 + 0 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) 11596 NM_194071 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 1763 chr1 153545126 153545247 + 0 NA promoter-TSS (NR_125947) promoter-TSS (NR_125947) -556 NR_125947 101928034 Hs.711397 NR_125947 LOC101928034 - uncharacterized LOC101928034 ncRNA 69 chr1 5745928 5746032 + 0 NA Intergenic Intergenic 116761 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 10888 chr16 2429163 2429307 + 0 NA promoter-TSS (NM_001323538) promoter-TSS (NM_001323538) -156 NM_001323538 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 10999 chr16 10578609 10578700 + 0 NA intron (NM_001424, intron 1 of 4) intron (NM_001424, intron 1 of 4) 2062 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 26526 chr7 85136091 85136195 + 0 NA Intergenic Intergenic -14212 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 14985 chr2 9951557 9951723 + 0 NA promoter-TSS (NM_198182) promoter-TSS (NM_198182) -23 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 19176 chr3 12810315 12810487 + 0 NA intron (NM_012298, intron 3 of 12) intron (NM_012298, intron 3 of 12) 13729 NM_001162499 23066 Hs.343664 NM_012298 ENSG00000144712 CAND2 TIP120B|Tp120b cullin associated and neddylation dissociated 2 (putative) protein-coding 27366 chr8 9188061 9188148 + 0 NA promoter-TSS (NR_125431) promoter-TSS (NR_125431) -895 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 24074 chr6 13724300 13724440 + 0 NA Intergenic LTR16A1|LTR|ERVL -12806 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 224 chr1 16164351 16164377 + 0 NA Intergenic L2a|LINE|L2 -8255 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 9325 chr14 71702128 71702268 + 0 NA intron (NM_001284247, intron 10 of 20) intron (NM_001284247, intron 10 of 20) 114627 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1 signal induced proliferation associated 1 like 1 protein-coding 23833 chr5 180292035 180292180 + 0 NA promoter-TSS (NM_001135044) promoter-TSS (NM_001135044) -36 NM_139068 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 22058 chr4 179625059 179625163 + 0 NA Intergenic Intergenic 1534038 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 28575 chr8 124104936 124105040 + 0 NA intron (NM_001039112, intron 39 of 40) L2c|LINE|L2 -64206 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 12550 chr17 44007003 44007016 + 0 NA intron (NM_153006, intron 4 of 6) CpG-11225 2345 NM_153006 162417 Hs.8876 NM_153006 ENSG00000161653 NAGS AGAS|ARGA N-acetylglutamate synthase protein-coding 30191 chr9 128635388 128635562 + 0 NA intron (NM_052844, intron 5 of 8) intron (NM_052844, intron 5 of 8) 21375 NM_052844 89891 Hs.495240 NM_052844 ENSG00000119333 WDR34 DIC5|FAP133|SRTD11|bA216B9.3 WD repeat domain 34 protein-coding 16457 chr2 150487634 150487821 + 0 NA promoter-TSS (NM_001254738) promoter-TSS (NM_001254738) -32 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 18123 chr20 47126026 47126154 + 0 NA intron (NM_005244, intron 9 of 15) intron (NM_005244, intron 9 of 15) -40877 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 2711 chr1 218489165 218489269 + 0 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 46591 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 22275 chr5 16736344 16736539 + 0 NA intron (NM_012334, intron 19 of 40) intron (NM_012334, intron 19 of 40) -119383 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 FAM134B JK-1|JK1 family with sequence similarity 134 member B protein-coding 29691 chr9 99819878 99819957 + 0 NA promoter-TSS (NR_109802) promoter-TSS (NR_109802) -28 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 22932 chr5 96823918 96824072 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -9850 NM_001198541 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 17558 chr20 6960033 6960137 + 0 NA Intergenic Intergenic 191987 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 9608 chr14 95249293 95249408 + 0 NA intron (NM_024734, intron 1 of 12) MLT1J-int|LTR|ERVL-MaLR 70558 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 7966 chr13 23675269 23675298 + 0 NA 3' UTR (NM_148957, exon 10 of 10) 3' UTR (NM_148957, exon 10 of 10) 95923 NM_001204458 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 2393 chr1 202018748 202018893 + 0 NA Intergenic L2b|LINE|L2 8258 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 10515 chr15 79004496 79004600 + 0 NA intron (NM_001145648, intron 14 of 26) intron (NM_001145648, intron 14 of 26) 1112 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 3222 chr10 5525985 5526089 + 0 NA 3' UTR (NM_005185, exon 1 of 1) 3' UTR (NM_005185, exon 1 of 1) 209 NR_120496 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 15059 chr2 14524243 14524347 + 0 NA Intergenic L2c|LINE|L2 -108388 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 26508 chr7 83468369 83468531 + 0 NA intron (NM_012431, intron 3 of 16) intron (NM_012431, intron 3 of 16) 172981 NM_001178129 9723 Hs.528721 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 279 chr1 19251685 19251821 + 0 NA promoter-TSS (NM_001271427) promoter-TSS (NM_001271427) 172 NM_016183 51154 Hs.463797 NM_016183 ENSG00000053372 MRTO4 C1orf33|MRT4|dJ657E11.4 MRT4 homolog, ribosome maturation factor protein-coding 14474 chr19 41263900 41264067 + 0 NA promoter-TSS (NM_007040) promoter-TSS (NM_007040) -191 NM_007040 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 31024 chrX 120561506 120561572 + 0 NA promoter-TSS (NM_001330624) promoter-TSS (NM_001330624) 4 NM_001330624 8450 Hs.102914 NM_003588 ENSG00000158290 CUL4B CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2 cullin 4B protein-coding 18389 chr20 62652290 62652297 + 0 NA intron (NM_016354, intron 1 of 11) intron (NM_016354, intron 1 of 11) 9848 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 2055 chr1 169781516 169781681 + 0 NA Intergenic MER4D|LTR|ERV1 13091 NM_001320201 92342 Hs.33922 NM_033418 ENSG00000171806 METTL18 AsTP2|C1orf156|HPM1 methyltransferase like 18 protein-coding 11468 chr16 66190110 66190214 + 0 NA Intergenic Intergenic -176445 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 26212 chr7 46786205 46786367 + 0 NA Intergenic Intergenic -89164 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 1487 chr1 110034459 110034563 + 0 NA promoter-TSS (NM_033088) promoter-TSS (NM_033088) -90 NM_033088 85369 Hs.584996 NM_033088 ENSG00000143093 STRIP1 FAM40A|FAR11A striatin interacting protein 1 protein-coding 5576 chr11 68121369 68121565 + 0 NA promoter-TSS (NM_212469) promoter-TSS (NM_212469) -76 NM_001277 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 9367 chr14 74275662 74275809 + 0 NA Intergenic Intergenic 27329 NR_003256 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 9196 chr14 64303580 64303720 + 0 NA 5' UTR (NM_001291712, exon 3 of 14) 5' UTR (NM_001291712, exon 3 of 14) -9240 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2 estrogen receptor 2 protein-coding 13866 chr19 1507831 1507982 + 0 NA intron (NM_213604, intron 7 of 11) intron (NM_213604, intron 7 of 11) 5283 NM_213604 339366 Hs.371674 NM_213604 ENSG00000185761 ADAMTSL5 THSD6 ADAMTS like 5 protein-coding 26434 chr7 75728352 75728534 + 0 NA intron (NM_005338, intron 1 of 30) intron (NM_005338, intron 1 of 30) 10529 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 2064 chr1 170561071 170561160 + 0 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -28506 NR_125958 101928650 Hs.676662 NR_125958 LOC101928650 - uncharacterized LOC101928650 ncRNA 25114 chr6 125919207 125919341 + 0 NA promoter-TSS (NM_001199622) promoter-TSS (NM_001199622) 50 NM_001199622 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 99 chr1 7401951 7402034 + 0 NA intron (NM_015215, intron 5 of 22) MIRc|SINE|MIR -369277 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 24020 chr6 10419168 10419272 + 0 NA intron (NM_001042425, intron 1 of 6) CpG 344 NM_001042425 7020 Hs.519880 NM_003220 ENSG00000137203 TFAP2A AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 transcription factor AP-2 alpha protein-coding 5424 chr11 64166066 64166143 + 0 NA promoter-TSS (NM_014067) promoter-TSS (NM_014067) 9 NM_014067 28992 Hs.602898 NM_014067 ENSG00000133315 MACROD1 LRP16 MACRO domain containing 1 protein-coding 23069 chr5 116085083 116085117 + 0 NA promoter-TSS (NM_001308080) promoter-TSS (NM_001308080) 124 NM_016144 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 16836 chr2 191014232 191014378 + 0 NA promoter-TSS (NM_007315) promoter-TSS (NM_007315) -55 NM_139266 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 26247 chr7 48636517 48636621 + 0 NA intron (NM_152701, intron 59 of 61) intron (NM_152701, intron 59 of 61) -287992 NR_003595 168448 Hs.567757 NM_152627 CDC14C CDC14B2|CDC14Bretro|CDC14CP cell division cycle 14C, pseuodgene pseudo 533 chr1 31798790 31798909 + 0 NA intron (NM_001281988, intron 6 of 14) MIRb|SINE|MIR 17202 NM_001281987 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 5164 chr11 35894304 35894353 + 0 NA Intergenic Intergenic -49653 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 6295 chr11 126062891 126063060 + 0 NA intron (NM_016952, intron 1 of 19) CpG 317 NM_016952 50937 Hs.38034 NM_016952 ENSG00000064309 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 26397 chr7 73683385 73683489 + 0 NA promoter-TSS (NM_032317) promoter-TSS (NM_032317) 14 NM_032317 84277 Hs.647046 NM_032317 ENSG00000176410 DNAJC30 WBSCR18 DnaJ heat shock protein family (Hsp40) member C30 protein-coding 15309 chr2 31390498 31390607 + 0 NA intron (NM_000379, intron 6 of 35) L1MC1|LINE|L1 24193 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 11062 chr16 15899727 15899859 + 0 NA Intergenic Intergenic -11144 NR_130755 123811 Hs.514179 NM_144600 ENSG00000133393 FOPNL C16orf63|FOR20|PHSECRG2 FGFR1OP N-terminal like protein-coding 13125 chr17 81345746 81345878 + 0 NA Intergenic CpG -15138 NM_178520 284186 Hs.364191 NM_178520 ENSG00000185332 TMEM105 - transmembrane protein 105 protein-coding 4448 chr10 118342228 118342379 + 0 NA promoter-TSS (NM_001134672) promoter-TSS (NM_001134672) 24 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 22077 chr4 183444368 183444522 + 0 NA promoter-TSS (NM_001317343) promoter-TSS (NM_001317343) -146 NM_017632 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 27475 chr8 19128330 19128434 + 0 NA Intergenic L3|LINE|CR1 -114696 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 18204 chr20 50982383 50982425 + 0 NA Intergenic Intergenic 23590 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 22347 chr5 33401635 33401681 + 0 NA Intergenic Intergenic -39038 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 29463 chr9 87546842 87546946 + 0 NA intron (NM_001288729, intron 2 of 25) AluJb|SINE|Alu 48359 NM_001288729 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 27610 chr8 27891925 27892068 + 0 NA intron (NM_173833, intron 7 of 8) intron (NM_173833, intron 7 of 8) -5880 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 29223 chr9 72586896 72586960 + 0 NA intron (NM_138691, intron 2 of 23) intron (NM_138691, intron 2 of 23) 65127 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 18493 chr21 33655740 33655857 + 0 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 13320 NM_003024 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 6556 chr12 7638748 7638852 + 0 NA Intergenic HUERS-P3-int|LTR|ERV1 27103 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 6923 chr12 46160230 46160319 + 0 NA Intergenic Intergenic 106221 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 14796 chr19 55146895 55147003 + 0 NA intron (NM_001126132, intron 3 of 13) CpG-15152 2405 NM_001126132 7138 Hs.631558 NM_003283 ENSG00000105048 TNNT1 ANM|NEM5|STNT|TNT|TNTS troponin T1, slow skeletal type protein-coding 263 chr1 17494344 17494448 + 0 NA Intergenic Intergenic -45439 NR_137287 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 4558 chr10 124394696 124394773 + 0 NA Intergenic Intergenic 24242 NM_001322968 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 29302 chr9 77271199 77271303 + 0 NA intron (NM_001018037, intron 23 of 70) L1ME2|LINE|L1 -93334 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 25738 chr7 16484821 16484925 + 0 NA Intergenic LTR16E2|LTR|ERVL -19024 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 3746 chr10 61190811 61190906 + 0 NA Intergenic MIR|SINE|MIR 174583 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 10971 chr16 5071734 5071879 + 0 NA promoter-TSS (NM_019109) promoter-TSS (NM_019109) -3 NM_019109 56052 Hs.592086 NM_019109 ENSG00000033011 ALG1 CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase protein-coding 21588 chr4 91449129 91449233 + 0 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 828121 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 26191 chr7 45769012 45769142 + 0 NA promoter-TSS (NR_024271) promoter-TSS (NR_024271) -59 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPT7P2 SEPT13|SEPT7B septin 7 pseudogene 2 pseudo 5919 chr11 96122687 96122781 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -198527 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 2985 chr1 234479063 234479177 + 0 NA promoter-TSS (NM_005646) promoter-TSS (NM_005646) -17 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 22581 chr5 58149940 58150027 + 0 NA Intergenic Intergenic -27642 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 20113 chr3 128994046 128994190 + 0 NA promoter-TSS (NM_020741) promoter-TSS (NM_020741) 25 NM_020741 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 9148 chr14 61420429 61420517 + 0 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 99030 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 24303 chr6 29813963 29814061 + 0 NA Intergenic Intergenic -12967 NM_002127 3135 Hs.512152 NM_002127 ENSG00000204632 HLA-G MHC-G major histocompatibility complex, class I, G protein-coding 26675 chr7 99254567 99254671 + 0 NA Intergenic MER91A|DNA|hAT-Tip100 -18682 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 21248 chr4 23324396 23324486 + 0 NA Intergenic Intergenic 556851 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 7781 chr12 121687073 121687180 + 0 NA Intergenic CpG -17472 NM_173855 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 19739 chr3 98730410 98730514 + 0 NA intron (NR_046683, intron 1 of 4) intron (NR_046683, intron 1 of 4) -1774 NM_001271146 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 13513 chr18 46658365 46658469 + 0 NA Intergenic Intergenic -1384 NM_144612 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 3210 chr10 4704273 4704409 + 0 NA Intergenic Intergenic -26271 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 LINC00704 - long intergenic non-protein coding RNA 704 ncRNA 7260 chr12 71839584 71839688 + 0 NA promoter-TSS (NM_001146213) promoter-TSS (NM_001146213) -71 NM_022771 64786 Hs.284630 NM_022771 ENSG00000121749 TBC1D15 RAB7-GAP TBC1 domain family member 15 protein-coding 22595 chr5 59793078 59793123 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -24488 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1716 chr1 151547375 151547479 + 0 NA intron (NM_001126337, intron 1 of 11) intron (NM_001126337, intron 1 of 11) 1631 NR_030280 693139 NR_030280 ENSG00000207606 MIR554 MIRN554|hsa-mir-554 microRNA 554 ncRNA 22820 chr5 83265376 83265480 + 0 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -187975 NM_174909 153339 Hs.355606 NM_174909 ENSG00000174695 TMEM167A TMEM167 transmembrane protein 167A protein-coding 22076 chr4 183438798 183438933 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -5726 NM_017632 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 19975 chr3 119145564 119145668 + 0 NA promoter-TSS (NM_152539) promoter-TSS (NM_152539) 435 NM_152538 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 7688 chr12 114636868 114636991 + 0 NA Intergenic Intergenic 47235 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 29430 chr9 85805271 85805274 + 0 NA promoter-TSS (NR_029410) promoter-TSS (NR_029410) -730 NR_029410 389765 Hs.715986 NR_029410 LOC389765 - kinesin family member 27 pseudogene pseudo 19352 chr3 37860466 37860595 + 0 NA intron (NR_110532, intron 1 of 5) CpG 1250 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 1663 chr1 148522588 148522668 + 0 NA Intergenic U1|snRNA|snRNA -39343 NM_001123068 644591 Hs.534674 NM_001123068 ENSG00000236334 PPIAL4G COAS-2 peptidylprolyl isomerase A like 4G protein-coding 14386 chr19 36054370 36054492 + 0 NA promoter-TSS (NM_001083961) promoter-TSS (NM_001083961) 331 NM_001331104 199745 Hs.350209 NM_152658 ENSG00000161277 THAP8 - THAP domain containing 8 protein-coding 27562 chr8 25175260 25175439 + 0 NA Intergenic Intergenic -9374 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 28465 chr8 117044800 117044953 + 0 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -90222 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 23647 chr5 160419114 160419223 + 0 NA promoter-TSS (NM_006425) promoter-TSS (NM_006425) -7 NM_006425 10569 Hs.435342 NM_006425 ENSG00000164609 SLU7 9G8|hSlu7 SLU7 homolog, splicing factor protein-coding 5716 chr11 78708523 78708564 + 0 NA intron (NM_001098816, intron 26 of 33) intron (NM_001098816, intron 26 of 33) -133679 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 20561 chr3 161276056 161276163 + 0 NA Intergenic L1PBa|LINE|L1 54819 NM_001320227 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 635 chr1 36386628 36386786 + 0 NA promoter-TSS (NM_001282546) promoter-TSS (NM_001282546) -780 NM_001282546 83931 Hs.471768 NM_032017 ENSG00000196182 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 9707 chr14 102552216 102552320 + 0 NA Intergenic Intergenic 12624 NR_036192 100422954 NR_036192 ENSG00000266015 MIR4309 - microRNA 4309 ncRNA 25394 chr6 156828572 156828614 + 0 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -48862 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 29249 chr9 74025742 74025846 + 0 NA Intergenic Intergenic -345737 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 26330 chr7 64313848 64313998 + 0 NA promoter-TSS (NM_001294255) promoter-TSS (NM_001294255) 50 NM_001170905 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 3950 chr10 77898590 77898772 + 0 NA intron (NM_004747, intron 1 of 31).2 intron (NM_004747, intron 1 of 31).2 27909 NM_004747 9231 Hs.652690 NM_004747 ENSG00000151208 DLG5 LP-DLG|P-DLG5|PDLG discs large MAGUK scaffold protein 5 protein-coding 23980 chr6 7692314 7692418 + 0 NA Intergenic Intergenic -33733 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 16973 chr2 206274911 206275015 + 0 NA promoter-TSS (NM_001285549) promoter-TSS (NM_001285549) -65 NM_001285549 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 - zinc finger DBF-type containing 2 protein-coding 27720 chr8 39581846 39581950 + 0 NA Intergenic LTR19C|LTR|ERV1 -2670 NR_135201 8749 Hs.127930 NM_014237 ENSG00000168619 ADAM18 ADAM27|tMDCIII ADAM metallopeptidase domain 18 protein-coding 16940 chr2 202870825 202870973 + 0 NA intron (NM_138468, intron 1 of 13) intron (NM_138468, intron 1 of 13) 573 NM_001288623 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 310 chr1 20633824 20634004 + 0 NA TTS (NR_106732) TTS (NR_106732) 235 NR_106732 102464833 NR_106732 ENSG00000158828 MIR6084 hsa-mir-6084 microRNA 6084 ncRNA 192 chr1 13799000 13799085 + 0 NA intron (NM_012231, intron 8 of 9) intron (NM_012231, intron 8 of 9) 49661 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 14699 chr19 49665863 49665980 + 0 NA promoter-TSS (NM_001197122) promoter-TSS (NM_001197122) -46 NM_001197124 3661 Hs.75254 NM_001571 ENSG00000126456 IRF3 IIAE7 interferon regulatory factor 3 protein-coding 14099 chr19 10942107 10942260 + 0 NA Intergenic Intergenic -13171 NM_024029 78992 Hs.164026 NM_024029 ENSG00000130733 YIPF2 FinGER2 Yip1 domain family member 2 protein-coding 21957 chr4 159006413 159006517 + 0 NA intron (NM_152543, intron 1 of 4) intron (NM_152543, intron 1 of 4) 28716 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 21686 chr4 108940269 108940373 + 0 NA intron (NM_032518, intron 9 of 33) intron (NM_032518, intron 9 of 33) -177242 NM_001146627 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 11732 chr16 81625274 81625500 + 0 NA intron (NM_198390, intron 3 of 20) intron (NM_198390, intron 3 of 20) 14039 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 11991 chr17 5486426 5486572 + 0 NA promoter-TSS (NM_001304777) promoter-TSS (NM_001304777) 125 NM_001258220 79003 Hs.267194 NM_024039 ENSG00000167842 MIS12 2510025F08Rik|KNTC2AP|MTW1|hMis12 MIS12, kinetochore complex component protein-coding 22935 chr5 96968291 96968358 + 0 NA intron (NM_175920, intron 1 of 17) intron (NM_175920, intron 1 of 17) 9872 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 4262 chr10 102646296 102646343 + 0 NA intron (NM_001345950, intron 1 of 4) intron (NM_001345950, intron 1 of 4) 1824 NM_030912 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 4320 chr10 106440791 106440888 + 0 NA Intergenic HUERS-P3-int|LTR|ERV1 300674 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LOC105378470 - uncharacterized LOC105378470 ncRNA 14904 chr2 740837 740842 + 0 NA Intergenic Intergenic -63400 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 3103 chr1 244048293 244048447 + 0 NA promoter-TSS (NM_001278196) promoter-TSS (NM_001278196) -569 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 9704 chr14 102362925 102363066 + 0 NA promoter-TSS (NM_032630) promoter-TSS (NM_032630) -79 NM_032630 51550 Hs.129634 NM_032630 ENSG00000100865 CINP - cyclin dependent kinase 2 interacting protein protein-coding 30040 chr9 121287437 121287586 + 0 NA intron (NM_001258030, intron 1 of 16) MER5A|DNA|hAT-Charlie 931 NM_001258030 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 20488 chr3 156812591 156812765 + 0 NA promoter-TSS (NR_003284) promoter-TSS (NR_003284) -657 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 2044 chr1 169106221 169106371 + 0 NA promoter-TSS (NM_001677) promoter-TSS (NM_001677) -413 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 4553 chr10 124093585 124093689 + 0 NA promoter-TSS (NM_001270765) promoter-TSS (NM_001270765) -30 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 9513 chr14 88698769 88698872 + 0 NA intron (NM_183387, intron 14 of 42) MIR|SINE|MIR 93932 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2 echinoderm microtubule associated protein like 5 protein-coding 22862 chr5 90409313 90409421 + 0 NA promoter-TSS (NR_105024) promoter-TSS (NR_105024) 419 NM_001297765 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 20005 chr3 120469616 120469778 + 0 NA Intergenic MER41B|LTR|ERV1 -18626 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 1437 chr1 107153108 107153212 + 0 NA intron (NM_001330665, intron 2 of 6) intron (NM_001330665, intron 2 of 6) 5091 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 4231 chr10 101118741 101118906 + 0 NA intron (NR_130724, intron 2 of 2) intron (NR_130724, intron 2 of 2) 12323 NR_130723 100038246 Hs.368784 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor ncRNA 26478 chr7 79056213 79056317 + 0 NA intron (NM_012301, intron 1 of 21) AluJr|SINE|Alu 47277 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 26305 chr7 55109505 55109572 + 0 NA promoter-TSS (NM_001346900) promoter-TSS (NM_001346900) -279 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 14151 chr19 12938386 12938540 + 0 NA promoter-TSS (NM_004343) promoter-TSS (NM_004343) -137 NM_004343 811 Hs.515162 NM_004343 ENSG00000179218 CALR CRT|HEL-S-99n|RO|SSA|cC1qR calreticulin protein-coding 26878 chr7 116616793 116616897 + 0 NA Intergenic Intergenic -2025 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 14766 chr19 53842309 53842413 + 0 NA Intergenic Intergenic -17958 NM_001277129 91662 Hs.631573 NM_033297 ENSG00000142405 NLRP12 CLR19.3|FCAS2|NALP12|PAN6|PYPAF7|RNO|RNO2 NLR family pyrin domain containing 12 protein-coding 10944 chr16 4307710 4307851 + 0 NA Intergenic CpG -6981 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 12948 chr17 72468350 72468506 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 124376 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 14507 chr19 43596088 43596229 + 0 NA promoter-TSS (NM_001007561) promoter-TSS (NM_001007561) -23 NM_001007561 126298 Hs.6217 NM_001007561 ENSG00000167378 IRGQ FKSG27|IRGQ1 immunity related GTPase Q protein-coding 19435 chr3 44966888 44967037 + 0 NA intron (NM_016598, intron 1 of 7) intron (NM_016598, intron 1 of 7) 9220 NM_001135179 51304 Hs.61430 NM_016598 ENSG00000163812 ZDHHC3 DHHC-3|DHHC3|GODZ|ZNF373 zinc finger DHHC-type containing 3 protein-coding 30762 chrX 55818800 55818963 + 0 NA Intergenic L1PBa|LINE|L1 -89242 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 30651 chrX 45824628 45824670 + 0 NA Intergenic Intergenic 26841 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LOC401585 - uncharacterized LOC401585 ncRNA 27845 chr8 53886124 53886236 + 0 NA intron (NR_104579, intron 1 of 3) intron (NR_104579, intron 1 of 3) 5308 NM_003702 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G-protein signaling 20 protein-coding 6108 chr11 113773692 113773882 + 0 NA promoter-TSS (NM_004724) promoter-TSS (NM_004724) -24 NM_004724 9183 Hs.503886 NM_004724 ENSG00000086827 ZW10 HZW10|KNTC1AP zw10 kinetochore protein protein-coding 1600 chr1 119140633 119140757 + 0 NA promoter-TSS (NM_015836) promoter-TSS (NM_015836) -23 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 TrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 1740 chr1 152183129 152183213 + 0 NA Intergenic Intergenic -23943 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 19874 chr3 111803289 111803352 + 0 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) -55860 NM_001134438 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 9584 chr14 93259216 93259244 + 0 NA intron (NM_001289133, intron 3 of 8) Tigger17a|DNA|TcMar-Tigger -52116 NM_032490 84520 Hs.20142 NM_032490 ENSG00000170270 GON7 C14orf142|PNAS-127 GON7, KEOPS complex subunit homolog protein-coding 27387 chr8 10928503 10928688 + 0 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) 88569 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 8250 chr13 48749870 48750013 + 0 NA Intergenic Intergenic 96230 NM_001308470 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 11197 chr16 29811291 29811395 + 0 NA promoter-TSS (NM_001256442) promoter-TSS (NM_001256442) -745 NM_145239 112476 Hs.655071 NM_145239 ENSG00000167371 PRRT2 BFIC2|BFIS2|DSPB3|DYT10|EKD1|FICCA|ICCA|IFITMD1|PKC proline rich transmembrane protein 2 protein-coding 3514 chr10 30433894 30433956 + 0 NA promoter-TSS (NM_001244134) promoter-TSS (NM_001244134) -96 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 15252 chr2 27932548 27932625 + 0 NA intron (NR_137440, intron 3 of 13) intron (NR_137440, intron 3 of 13) -41472 NR_028308 100302650 Hs.729719 NR_028308 BRE-AS1 - BRE antisense RNA 1 ncRNA 565 chr1 32901436 32901540 + 0 NA promoter-TSS (NM_001329722) promoter-TSS (NM_001329722) -48 NM_001329723 113452 Hs.534521 NM_033504 ENSG00000121900 TMEM54 BCLP|CAC-1|CAC1 transmembrane protein 54 protein-coding 8722 chr14 23078801 23078935 + 0 NA exon (NM_014977, exon 7 of 19) exon (NM_014977, exon 7 of 19) -7298 NM_001164817 22985 Hs.124490 NM_014977 ENSG00000100813 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 19494 chr3 49358419 49358556 + 0 NA TTS (NM_001313947) TTS (NM_001313947) 113 NM_201397 2876 Hs.76686 NM_000581 ENSG00000233276 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 850 chr1 48018889 48019039 + 0 NA Intergenic Intergenic -22074 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 21002 chr3 193831539 193831682 + 0 NA Intergenic Intergenic 162628 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 10688 chr15 90234004 90234028 + 0 NA promoter-TSS (NM_001013657) promoter-TSS (NM_001013657) 31 NM_001277764 10519 Hs.715556 NM_006384 ENSG00000185043 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 protein-coding 25942 chr7 28354633 28354737 + 0 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 55364 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 13264 chr18 11005735 11005839 + 0 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 142975 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 17707 chr20 18793941 18794139 + 0 NA promoter-TSS (NR_026884) promoter-TSS (NR_026884) -9 NR_026885 100270804 Hs.598768 NR_026885 LOC100270804 - uncharacterized LOC100270804 ncRNA 4683 chr11 1389649 1389776 + 0 NA promoter-TSS (NM_001256627) promoter-TSS (NM_001256627) -187 NM_003957 9024 Hs.170819 NM_003957 ENSG00000174672 BRSK2 C11orf7|PEN11B|SAD1|SADA|STK29 BR serine/threonine kinase 2 protein-coding 14370 chr19 35510470 35510574 + 0 NA promoter-TSS (NM_001308383) promoter-TSS (NM_001308383) -12 NR_033746 93099 Hs.417795 NM_033317 ENSG00000161249 DMKN UNQ729|ZD52F10 dermokine protein-coding 15086 chr2 16650757 16650861 + 0 NA intron (NM_030797, intron 1 of 11) intron (NM_030797, intron 1 of 11) 15057 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 27864 chr8 55773447 55773554 + 0 NA promoter-TSS (NM_001286661) promoter-TSS (NM_001286661) -93 NM_152417 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 19908 chr3 113557528 113557608 + 0 NA intron (NM_001322297, intron 1 of 24) MLT1C|LTR|ERVL-MaLR 25197 NM_001322299 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 10614 chr15 85459217 85459367 + 0 NA intron (NM_007200, intron 1 of 36) AluSx1|SINE|Alu 78676 NM_006738 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 7986 chr13 24922868 24923010 + 0 NA promoter-TSS (NR_047594) promoter-TSS (NR_047594) -50 NR_047594 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 11629 chr16 74743679 74743783 + 0 NA intron (NM_024306, intron 1 of 6) intron (NM_024306, intron 1 of 6) 31100 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 13091 chr17 79228753 79228857 + 0 NA intron (NM_001082575, intron 4 of 14) intron (NM_001082575, intron 4 of 14) 153868 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 13877 chr19 1885410 1885558 + 0 NA promoter-TSS (NM_001130111) promoter-TSS (NM_001130111) 35 NM_001130111 81926 Hs.465542 NM_031213 ENSG00000129968 ABHD17A C19orf27|FAM108A1 abhydrolase domain containing 17A protein-coding 15567 chr2 54983998 54984102 + 0 NA intron (NM_020532, intron 4 of 8) intron (NM_020532, intron 4 of 8) 26284 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 24979 chr6 107459423 107459599 + 0 NA promoter-TSS (NM_020381) promoter-TSS (NM_020381) 64 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 19300 chr3 30597383 30597460 + 0 NA Intergenic Intergenic -9081 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 28591 chr8 125219365 125219479 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) 127581 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase protein-coding 11079 chr16 19008401 19008505 + 0 NA intron (NM_001160364, intron 1 of 15) MLT1H|LTR|ERVL-MaLR 24166 NM_001160364 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 25156 chr6 131864090 131864235 + 0 NA intron (NM_006208, intron 9 of 24) intron (NM_006208, intron 9 of 24) 56146 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 4777 chr11 8328903 8329066 + 0 NA Intergenic Intergenic -60349 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 11138 chr16 23424708 23424924 + 0 NA exon (NM_153603, exon 7 of 17) exon (NM_153603, exon 7 of 17) 28375 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 11 chr1 1116218 1116306 + 0 NA promoter-TSS (NM_017891) promoter-TSS (NM_017891) 94 NM_017891 54991 Hs.235095 NM_017891 ENSG00000131591 C1orf159 - chromosome 1 open reading frame 159 protein-coding 20340 chr3 146250882 146250985 + 0 NA promoter-TSS (NM_001128305) promoter-TSS (NM_001128305) -69 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 10826 chr15 101359626 101359711 + 0 NA intron (NM_138323, intron 13 of 13) intron (NM_138323, intron 13 of 13) 25231 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 16817 chr2 190343803 190343881 + 0 NA 5' UTR (NM_001128928, exon 1 of 7) 5' UTR (NM_001128928, exon 1 of 7) 372 NM_002194 3628 Hs.32309 NM_002194 ENSG00000151689 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 14622 chr19 47599051 47599155 + 0 NA Intergenic Intergenic -9093 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 23526 chr5 150759003 150759109 + 0 NA promoter-TSS (NM_001135644) promoter-TSS (NM_001135644) 39 NM_016221 51164 Hs.675564 NM_016221 ENSG00000132912 DCTN4 DYN4|P62 dynactin subunit 4 protein-coding 12098 chr17 10119885 10120031 + 0 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) 78593 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 MLL/GAS7 growth arrest specific 7 protein-coding 31107 chrX 136909341 136909473 + 0 NA Intergenic CpG -28627 NM_001164803 27316 Hs.380118 NM_002139 ENSG00000147274 RBMX HNRNPG|HNRPG|MRXS11|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein, X-linked protein-coding 29639 chr9 97041951 97042055 + 0 NA Intergenic MER89|LTR|ERV1 -2360 NM_001201575 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 26503 chr7 82506836 82506940 + 0 NA Intergenic MER52D|LTR|ERV1 -63082 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 13728 chr18 64208006 64208110 + 0 NA intron (NR_033881, intron 2 of 9) intron (NR_033881, intron 2 of 9) 51997 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 3340 chr10 16381284 16381388 + 0 NA Intergenic Intergenic -55607 NM_001261837 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 19197 chr3 14402396 14402521 + 0 NA promoter-TSS (NM_001134368) promoter-TSS (NM_001134368) -118 NR_103507 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 18777 chr22 30210554 30210614 + 0 NA Intergenic Intergenic 36267 NM_001257135 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 6498 chr12 6216088 6216266 + 0 NA intron (NM_001769, intron 1 of 7) intron (NM_001769, intron 1 of 7) 15861 NM_001769 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 24738 chr6 56809121 56809225 + 0 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 34492 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 5960 chr11 102011201 102011324 + 0 NA Intergenic LTR16A|LTR|ERVL -36176 NM_001195005 85016 Hs.98328 NM_032930 ENSG00000137691 C11orf70 - chromosome 11 open reading frame 70 protein-coding 14594 chr19 46373813 46373917 + 0 NA intron (NM_001204284, intron 2 of 11) L2b|LINE|L2 26871 NM_001204284 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 7121 chr12 56128011 56128163 + 0 NA promoter-TSS (NM_001184796) promoter-TSS (NM_001184796) -115 NM_015292 23344 Hs.632729 NM_015292 ENSG00000139641 ESYT1 FAM62A|MBC2 extended synaptotagmin 1 protein-coding 11190 chr16 28974679 28974814 + 0 NA promoter-TSS (NM_001142448) promoter-TSS (NM_001142448) -29 NM_001142451 83985 Hs.617449 NM_032038 ENSG00000169682 SPNS1 HSpin1|LAT|PP2030|SPIN1|SPINL|nrs sphingolipid transporter 1 (putative) protein-coding 199 chr1 14911538 14911642 + 0 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -12539 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 4972 chr11 19200561 19200705 + 0 NA intron (NM_003476, intron 2 of 6) intron (NM_003476, intron 2 of 6) 9938 NM_003476 8048 Hs.83577 NM_003476 ENSG00000129170 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine rich protein 3 protein-coding 28392 chr8 106046070 106046149 + 0 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 14394 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 - ZFPM2 antisense RNA 1 ncRNA 26619 chr7 94620791 94620923 + 0 NA intron (NM_001346720, intron 5 of 11) intron (NM_001346720, intron 5 of 11) 35352 NM_001099400 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 1899 chr1 159891683 159891829 + 0 NA intron (NM_012337, intron 2 of 11) intron (NM_012337, intron 2 of 11) 8323 NR_130464 100422852 NR_130464 ENSG00000266458 MIR4259 - microRNA 4259 ncRNA 7934 chr13 19958548 19958662 + 0 NA promoter-TSS (NM_197968) promoter-TSS (NM_197968) -65 NM_003453 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 19114 chr3 7788016 7788120 + 0 NA Intergenic L1MD2|LINE|L1 228239 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 18982 chr22 42937567 42937671 + 0 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) 9422 NM_007229 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 1929 chr1 161132771 161132922 + 0 NA promoter-TSS (NM_001039712) promoter-TSS (NM_001039712) -158 NM_001039711 9191 Hs.744092 NM_004216 ENSG00000158796 DEDD CASP8IP1|DEDD1|DEFT|FLDED1|KE05 death effector domain containing protein-coding 13391 chr18 31301298 31301402 + 0 NA Intergenic Intergenic -16739 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 15153 chr2 20446956 20447099 + 0 NA promoter-TSS (NM_004040) promoter-TSS (NM_004040) -44 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 24774 chr6 71138535 71138610 + 0 NA Intergenic L1PA2|LINE|L1 -149870 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 11396 chr16 56425515 56425619 + 0 NA promoter-TSS (NM_001323511) promoter-TSS (NM_001323511) -29 NM_001144 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 30073 chr9 122941276 122941402 + 0 NA intron (NM_012197, intron 1 of 25) intron (NM_012197, intron 1 of 25) 330 NM_012197 23637 Hs.271341 NM_012197 ENSG00000011454 RABGAP1 GAPCENA|TBC1D11 RAB GTPase activating protein 1 protein-coding 22919 chr5 96573060 96573117 + 0 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -88949 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 12647 chr17 49678022 49678156 + 0 NA promoter-TSS (NM_001007226) promoter-TSS (NM_001007226) 74 NM_001007229 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 23739 chr5 173056176 173056352 + 0 NA promoter-TSS (NM_001168393) promoter-TSS (NM_001168393) -88 NM_001168393 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 23327 chr5 139643438 139643542 + 0 NA Intergenic Intergenic -3809 NM_001317201 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 12835 chr17 63741788 63741892 + 0 NA 5' UTR (NM_153335, exon 1 of 9) 5' UTR (NM_153335, exon 1 of 9) 130 NM_001165969 92335 Hs.514402 NM_153335 ENSG00000266173 STRADA LYK5|NY-BR-96|PMSE|STRAD|Stlk STE20-related kinase adaptor alpha protein-coding 30549 chrX 20516311 20516423 + 0 NA Intergenic Intergenic -249735 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 6507 chr12 6312652 6312663 + 0 NA promoter-TSS (NM_001144857) promoter-TSS (NM_001144857) 6 NM_001144857 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 29367 chr9 82031694 82031798 + 0 NA Intergenic Intergenic 42974 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 26958 chr7 126589449 126589553 + 0 NA intron (NR_028041, intron 8 of 10) L1MA8|LINE|L1 468683 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 3223 chr10 5539048 5539190 + 0 NA Intergenic Intergenic -12873 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 3244 chr10 6144754 6144858 + 0 NA promoter-TSS (NM_001145443) promoter-TSS (NM_001145443) -72 NM_001323016 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 23794 chr5 177516981 177517192 + 0 NA 5' UTR (NM_001321732, exon 1 of 16) 5' UTR (NM_001321732, exon 1 of 16) 240 NM_016222 51428 Hs.484288 NM_016222 ENSG00000183258 DDX41 ABS|MPLPF DEAD-box helicase 41 protein-coding 21314 chr4 41710043 41710165 + 0 NA Intergenic Intergenic 38866 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B NBLST2|NBPhox|PMX2B paired like homeobox 2b protein-coding 15657 chr2 64355214 64355285 + 0 NA Intergenic Intergenic -14401 NR_106995 102465833 NR_106995 ENSG00000264297 MIR4433B hsa-mir-4433b microRNA 4433b ncRNA 16480 chr2 153043515 153043619 + 0 NA Intergenic L2b|LINE|L2 325674 NR_024526 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 16675 chr2 173590422 173590504 + 0 NA Intergenic Intergenic 235630 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 471 chr1 28235976 28236116 + 0 NA promoter-TSS (NM_178191) promoter-TSS (NM_178191) -45 NM_178190 93974 Hs.744914 NM_016311 ENSG00000130770 ATPIF1 ATPI|ATPIP|IP ATPase inhibitory factor 1 protein-coding 8626 chr13 110915242 110915334 + 0 NA promoter-TSS (NM_017664) promoter-TSS (NM_017664) -181 NR_104587 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 10137 chr15 55290619 55290723 + 0 NA promoter-TSS (NM_183235) promoter-TSS (NM_183235) -856 NM_183235 5873 Hs.626665 NM_004580 ENSG00000069974 RAB27A GS2|HsT18676|RAB27|RAM RAB27A, member RAS oncogene family protein-coding 18109 chr20 45972495 45972565 + 0 NA promoter-TSS (NM_022095) promoter-TSS (NM_022095) -336 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 31142 chrX 150575449 150575568 + 0 NA intron (NM_000252, intron 1 of 14) MER5A1|DNA|hAT-Charlie 6911 NM_000252 4534 Hs.655056 NM_000252 ENSG00000171100 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 15716 chr2 68062987 68063139 + 0 NA promoter-TSS (NM_001190265) promoter-TSS (NM_001190265) -36 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 23545 chr5 151581954 151582110 + 0 NA Intergenic Intergenic -13088 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 18053 chr20 43955417 43955521 + 0 NA intron (NM_032883, intron 2 of 9) intron (NM_032883, intron 2 of 9) 9573 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 10642 chr15 88246894 88246998 + 0 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) -5784 NR_038229 283738 Hs.578429 NR_038229 ENSG00000260305 NTRK3-AS1 - NTRK3 antisense RNA 1 ncRNA 28399 chr8 106608681 106608770 + 0 NA intron (NM_001198533, intron 3 of 16) intron (NM_001198533, intron 3 of 16) -49083 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 16211 chr2 119256011 119256115 + 0 NA intron (NM_182915, intron 5 of 5) intron (NM_182915, intron 5 of 5) -6992 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 28989 chr9 22097743 22097880 + 0 NA intron (NR_003529, intron 14 of 18) intron (NR_003529, intron 14 of 18) -88498 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 28068 chr8 79799642 79799736 + 0 NA intron (NR_125410, intron 3 of 3) intron (NR_125410, intron 3 of 3) 31547 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 9475 chr14 81400236 81400340 + 0 NA intron (NM_001256430, intron 2 of 7) intron (NM_001256430, intron 2 of 7) 26924 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 29398 chr9 84669856 84669960 + 0 NA promoter-TSS (NM_001018064) promoter-TSS (NM_001018064) 228 NM_001018065 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 1936 chr1 161399353 161399444 + 0 NA Intergenic CpG -31515 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 27206 chr7 149261947 149262051 + 0 NA promoter-TSS (NM_001195220) promoter-TSS (NM_001195220) -172 NM_001195220 100289678 Hs.490512 NM_001195220 ENSG00000204946 ZNF783 - zinc finger family member 783 protein-coding 27019 chr7 131235737 131235920 + 0 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 91951 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 7089 chr12 54286090 54286244 + 0 NA TTS (NM_002136) TTS (NM_002136) 5477 NM_002136 3178 Hs.546261 NM_002136 ENSG00000135486 HNRNPA1 ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 heterogeneous nuclear ribonucleoprotein A1 protein-coding 1565 chr1 115671496 115671624 + 0 NA intron (NM_001172411, intron 4 of 7) intron (NM_001172411, intron 4 of 7) 28931 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 28037 chr8 73972310 73972352 + 0 NA promoter-TSS (NM_005648) promoter-TSS (NM_005648) -44 NM_001204860 6921 Hs.533437 NM_005648 ENSG00000154582 ELOC SIII|TCEB1 elongin C protein-coding 20595 chr3 168426310 168426414 + 0 NA intron (NR_021485, intron 3 of 15) MLT1B-int|LTR|ERVL-MaLR -125492 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 24535 chr6 41713186 41713362 + 0 NA intron (NM_001167827, intron 1 of 8) intron (NM_001167827, intron 1 of 8) 21127 NM_001271945 7942 Hs.485360 NM_007162 ENSG00000112561 TFEB ALPHATFEB|BHLHE35|TCFEB transcription factor EB protein-coding 14489 chr19 42206961 42207046 + 0 NA intron (NR_073046, intron 3 of 4) intron (NR_073046, intron 3 of 4) 10789 NM_001270615 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 12120 chr17 14069361 14069513 + 0 NA promoter-TSS (NM_001303) promoter-TSS (NM_001303) 21 NR_049718 100874058 Hs.720411 NR_049718 ENSG00000236088 COX10-AS1 COX10-AS|COX10AS COX10 antisense RNA 1 ncRNA 22029 chr4 174538970 174539059 + 0 NA Intergenic Intergenic -16116 NM_000860 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 hydroxyprostaglandin dehydrogenase 15-(NAD) protein-coding 6016 chr11 107545354 107545468 + 0 NA intron (NM_138775, intron 7 of 11) intron (NM_138775, intron 7 of 11) 20324 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9 alkB homolog 8, tRNA methyltransferase protein-coding 26999 chr7 129970170 129970274 + 0 NA Intergenic Intergenic -17262 NM_003344 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 13427 chr18 34929614 34929718 + 0 NA Intergenic Intergenic -47262 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 23377 chr5 141681116 141681208 + 0 NA intron (NM_022481, intron 1 of 32) intron (NM_022481, intron 1 of 32) 1071 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 19451 chr3 46692726 46692860 + 0 NA intron (NR_135622, intron 1 of 24) intron (NR_135622, intron 1 of 24) 863 NM_001190707 259173 Hs.517937 NM_147129 ENSG00000178038 ALS2CL RN49018 ALS2 C-terminal like protein-coding 19269 chr3 24678556 24678660 + 0 NA Intergenic Intergenic -150715 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 7097 chr12 54933665 54933761 + 0 NA Intergenic MER41B|LTR|ERV1 40019 NM_014796 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 7991 chr13 25463545 25463649 + 0 NA intron (NM_016529, intron 1 of 36) intron (NM_016529, intron 1 of 36) -5177 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 11403 chr16 56643521 56643697 + 0 NA promoter-TSS (NR_027781) promoter-TSS (NR_027781) -78 NR_027781 326343 Hs.679600 NM_175620 MT1DP MTM metallothionein 1D, pseudogene pseudo 28500 chr8 118862293 118862440 + 0 NA Intergenic MER110A|LTR|ERV1 89778 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 6708 chr12 19031195 19031257 + 0 NA Intergenic Intergenic -98466 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 19732 chr3 98522969 98523087 + 0 NA promoter-TSS (NM_019895) promoter-TSS (NM_019895) 38 NM_001040199 56650 Hs.531371 NM_019895 ENSG00000080822 CLDND1 C3orf4|GENX-3745 claudin domain containing 1 protein-coding 15390 chr2 38751473 38751577 + 0 NA promoter-TSS (NM_001031684) promoter-TSS (NM_001031684) -31 NM_001195446 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 19466 chr3 48301379 48301536 + 0 NA promoter-TSS (NM_001308433) promoter-TSS (NM_001308433) -46 NM_005793 10201 Hs.465558 NM_005793 ENSG00000172113 NME6 IPIA-ALPHA|NDK 6|NM23-H6 NME/NM23 nucleoside diphosphate kinase 6 protein-coding 27671 chr8 35022971 35023075 + 0 NA Intergenic MIR|SINE|MIR -212434 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 24394 chr6 32255263 32255367 + 0 NA non-coding (NR_136246, exon 1 of 2) non-coding (NR_136246, exon 1 of 2) 142 NR_136245 101929163 Hs.57692 NM_001013681 ENSG00000277427 LOC101929163 - uncharacterized LOC101929163 ncRNA 20277 chr3 140953036 140953140 + 0 NA intron (NM_018155, intron 1 of 6) Charlie29a|DNA|hAT-Charlie 11268 NM_001104647 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 22138 chr5 271536 271572 + 0 NA promoter-TSS (NM_001267558) promoter-TSS (NM_001267558) -30 NR_104613 102467073 Hs.368328 NR_104613 HRAT5 - heart tissue-associated transcript 5 ncRNA 14659 chr19 48738968 48739119 + 0 NA exon (NM_017805, exon 3 of 12) exon (NM_017805, exon 3 of 12) 1670 NM_017805 54922 Hs.233955 NM_017805 ENSG00000105538 RASIP1 RAIN Ras interacting protein 1 protein-coding 27144 chr7 142535115 142535320 + 0 NA Intergenic Intergenic -131082 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 18213 chr20 51361052 51361136 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 91883 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 13086 chr17 79005417 79005576 + 0 NA intron (NM_001159772, intron 1 of 5) intron (NM_001159772, intron 1 of 5) 4321 NM_001159773 124583 Hs.8859 NM_138793 ENSG00000171302 CANT1 DBQD|DBQD1|SCAN-1|SCAN1|SHAPY calcium activated nucleotidase 1 protein-coding 14260 chr19 18224560 18224704 + 0 NA promoter-TSS (NM_001098819) promoter-TSS (NM_001098819) -139 NM_001098819 5143 Hs.132584 NM_000923 ENSG00000105650 PDE4C DPDE1|PDE21 phosphodiesterase 4C protein-coding 31052 chrX 130110621 130110753 + 0 NA promoter-TSS (NM_001127197) promoter-TSS (NM_001127197) 26 NM_001127197 2000 Hs.271940 NM_001421 ENSG00000102034 ELF4 ELFR|MEF E74 like ETS transcription factor 4 protein-coding 37 chr1 2189626 2189779 + 0 NA non-coding (NR_046427, exon 4 of 4) non-coding (NR_046427, exon 4 of 4) 5073 NM_001282671 199990 Hs.107101 NM_182533 ENSG00000162585 FAAP20 C1orf86|FP7162 Fanconi anemia core complex associated protein 20 protein-coding 2513 chr1 206909507 206909542 + 0 NA intron (NM_005449, intron 6 of 7) CpG-2158 12081 NM_006850 11009 Hs.58831 NM_006850 ENSG00000162892 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 3875 chr10 72355014 72355111 + 0 NA promoter-TSS (NM_001002762) promoter-TSS (NM_001002762) 87 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 12084 chr17 8408459 8408612 + 0 NA Intergenic Intergenic -10709 NM_001146684 643904 Hs.526550 NM_001146684 ENSG00000189051 RNF222 - ring finger protein 222 protein-coding 11589 chr16 71358672 71358776 + 0 NA promoter-TSS (NM_001740) promoter-TSS (NM_001740) 11 NM_001740 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 26030 chr7 34321364 34321468 + 0 NA Intergenic Intergenic -336823 NM_001300934 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 9755 chr14 105301059 105301165 + 0 NA promoter-TSS (NM_001242790) promoter-TSS (NM_001242790) -120 NM_001242788 2972 Hs.424484 NM_001519 ENSG00000185024 BRF1 BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF BRF1, RNA polymerase III transcription initiation factor subunit protein-coding 1839 chr1 156114658 156114758 + 0 NA promoter-TSS (NM_170707) promoter-TSS (NM_170707) 38 NM_001282626 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 6269 chr11 124800384 124800521 + 0 NA promoter-TSS (NM_001312919) promoter-TSS (NM_001312919) 24 NR_103862 100507283 Hs.564177 NR_103862 ENSG00000245498 LOC100507283 - uncharacterized LOC100507283 ncRNA 22764 chr5 77893588 77893692 + 0 NA intron (NR_105012, intron 1 of 1) intron (NR_105012, intron 1 of 1) 8984 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 9462 chr14 80931023 80931096 + 0 NA intron (NM_152446, intron 1 of 23) Charlie3|DNA|hAT-Charlie 8481 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 9781 chr15 20340340 20340465 + 0 NA Intergenic (AGCCAGCCA)n|Simple_repeat|Simple_repeat 57658 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 11045 chr16 14501706 14501810 + 0 NA intron (NM_001242992, intron 20 of 22).2 intron (NM_001242992, intron 20 of 22).2 128513 NM_001134477 5073 Hs.253197 NM_002582 ENSG00000140694 PARN DAN|DKCB6|PFBMFT4 poly(A)-specific ribonuclease protein-coding 23451 chr5 147509234 147509338 + 0 NA intron (NM_001197294, intron 1 of 13) CpG 770 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 3962 chr10 78951108 78951179 + 0 NA intron (NR_024431, intron 8 of 9) intron (NR_024431, intron 8 of 9) 116305 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 8599 chr13 110012238 110012347 + 0 NA Intergenic Intergenic -40993 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 22452 chr5 42641437 42641541 + 0 NA intron (NM_001242404, intron 3 of 9) intron (NM_001242404, intron 3 of 9) 75625 NM_001242460 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 21721 chr4 114400711 114400808 + 0 NA Intergenic Tigger13a|DNA|TcMar-Tigger -197643 NM_001128174 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 28093 chr8 81026505 81026609 + 0 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 85511 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 7346 chr12 84738639 84738810 + 0 NA Intergenic LTR16A2|LTR|ERVL 174105 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 13190 chr17_GL000205v2_random 140711 140816 + 0 NA Intergenic Intergenic -82797 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 13870 chr19 1652876 1653023 + 0 NA promoter-TSS (NM_003200) promoter-TSS (NM_003200) -620 NM_003200 6929 Hs.371282 NM_003200 ENSG00000071564 TCF3 AGM8|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21 transcription factor 3 protein-coding 22765 chr5 77924097 77924201 + 0 NA intron (NR_105012, intron 1 of 1) MLT1G|LTR|ERVL-MaLR -34098 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 21662 chr4 105211013 105211117 + 0 NA intron (NM_001127208, intron 2 of 10) L2a|LINE|L2 64380 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 18250 chr20 53735718 53735813 + 0 NA Intergenic Intergenic 127411 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 7876 chr12 127126066 127126257 + 0 NA Intergenic L2a|LINE|L2 -65764 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 7259 chr12 71754700 71754825 + 0 NA promoter-TSS (NM_014999) promoter-TSS (NM_014999) -101 NM_014999 23011 Hs.524590 NM_014999 ENSG00000080371 RAB21 - RAB21, member RAS oncogene family protein-coding 28793 chr8 142727078 142727233 + 0 NA promoter-TSS (NR_038925) promoter-TSS (NR_038925) -48 NM_016647 51337 Hs.368402 NM_016647 ENSG00000130193 THEM6 C8orf55|DSCD75 thioesterase superfamily member 6 protein-coding 28661 chr8 128666140 128666304 + 0 NA Intergenic Intergenic -101543 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 334 chr1 22052523 22052749 + 0 NA promoter-TSS (NM_001791) promoter-TSS (NM_001791) 9 NM_044472 998 Hs.467637 NM_001791 ENSG00000070831 CDC42 CDC42Hs|G25K|TKS cell division cycle 42 protein-coding 24661 chr6 48111123 48111227 + 0 NA Intergenic LTR33|LTR|ERVL -42486 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 3582 chr10 35640953 35641104 + 0 NA TTS (NR_039831) TTS (NR_039831) 224 NR_039831 100616500 NR_039831 ENSG00000177283 MIR4683 - microRNA 4683 ncRNA 23923 chr6 4136052 4136206 + 0 NA promoter-TSS (NR_028588) promoter-TSS (NR_028588) 57 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 29872 chr9 111743412 111743516 + 0 NA intron (NR_109816, intron 10 of 26) MER44B|DNA|TcMar-Tigger 16069 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 C9orf84 - chromosome 9 open reading frame 84 protein-coding 31100 chrX 136310571 136310675 + 0 NA intron (NM_153834, intron 4 of 25) intron (NM_153834, intron 4 of 25) 9660 NM_153834 139378 Hs.381354 NM_153834 ENSG00000156920 ADGRG4 GPR112|PGR17|RP1-299I16 adhesion G protein-coupled receptor G4 protein-coding 24972 chr6 106799223 106799328 + 0 NA Intergenic Intergenic -11850 NR_033557 100422737 Hs.634681 NR_033557 ENSG00000235142 LOC100422737 - uncharacterized LOC100422737 ncRNA 16832 chr2 190838724 190838780 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -42069 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 5256 chr11 47924421 47924548 + 0 NA Intergenic Intergenic -56074 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type J protein-coding 6888 chr12 42237589 42237749 + 0 NA non-coding (NR_135139, exon 2 of 7) non-coding (NR_135139, exon 2 of 7) 699 NM_001320080 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 29908 chr9 113341760 113341954 + 0 NA Intergenic L2b|LINE|L2 -1517 NM_001012361 114987 Hs.133331 NM_145241 ENSG00000148225 WDR31 - WD repeat domain 31 protein-coding 23963 chr6 7261321 7261501 + 0 NA Intergenic Intergenic 51903 NM_001292008 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 16028 chr2 101205656 101205798 + 0 NA Intergenic Intergenic -47156 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 23215 chr5 132446176 132446233 + 0 NA intron (NR_045116, intron 2 of 3) intron (NR_045116, intron 2 of 3) 35431 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 19670 chr3 72996784 72996848 + 0 NA promoter-TSS (NM_001318028) promoter-TSS (NM_001318028) 31 NM_001318025 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 5984 chr11 103525216 103525320 + 0 NA Intergenic L1MC3|LINE|L1 -324638 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 30394 chr9 137590512 137590662 + 0 NA promoter-TSS (NM_138462) promoter-TSS (NM_138462) -102 NM_138462 116225 Hs.128096 NM_138462 ENSG00000165724 ZMYND19 MIZIP zinc finger MYND-type containing 19 protein-coding 5847 chr11 93005399 93005503 + 0 NA Intergenic Intergenic 35828 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 2454 chr1 204207215 204207319 + 0 NA intron (NM_198447, intron 1 of 4) intron (NM_198447, intron 1 of 4) 6825 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 5995 chr11 105035125 105035230 + 0 NA promoter-TSS (NM_033292) promoter-TSS (NM_033292) -20 NM_033292 834 Hs.2490 NM_001223 ENSG00000137752 CASP1 ICE|IL1BC|P45 caspase 1 protein-coding 18947 chr22 41205190 41205329 + 0 NA promoter-TSS (NM_031488) promoter-TSS (NM_031488) -50 NM_031488 83746 Hs.517641 NM_031488 ENSG00000100395 L3MBTL2 H-l(3)mbt-l|L3MBT L3MBTL2 polycomb repressive complex 1 subunit protein-coding 8452 chr13 95254389 95254493 + 0 NA intron (NM_001105515, intron 1 of 20) L2a|LINE|L2 47005 NM_005845 10257 Hs.508423 NM_005845 ENSG00000125257 ABCC4 MOAT-B|MOATB|MRP4 ATP binding cassette subfamily C member 4 protein-coding 7833 chr12 123519372 123519508 + 0 NA intron (NM_001319302, intron 2 of 7) intron (NM_001319302, intron 2 of 7) 786 NM_001319244 353116 Hs.530315 NM_178314 ENSG00000188026 RILPL1 GOSPEL|RLP1 Rab interacting lysosomal protein like 1 protein-coding 5588 chr11 69101567 69101671 + 0 NA Intergenic Intergenic 18443 NR_036122 100422846 NR_036122 ENSG00000265539 MIR3164 - microRNA 3164 ncRNA 20155 chr3 131216967 131217121 + 0 NA intron (NM_001321220, intron 13 of 16) intron (NM_001321220, intron 13 of 16) -144801 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 8468 chr13 97257943 97258072 + 0 NA intron (NM_207304, intron 1 of 6) intron (NM_207304, intron 1 of 6) 35711 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 20557 chr3 160837705 160837854 + 0 NA intron (NM_139245, intron 1 of 3) MER45A|DNA|hAT-Tip100 -4434 NM_001317912 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 30837 chrX 74420591 74420655 + 0 NA promoter-TSS (NM_006517) promoter-TSS (NM_006517) -870 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 27307 chr8 406804 406950 + 0 NA promoter-TSS (NM_012173) promoter-TSS (NM_012173) 69 NM_183421 26260 Hs.438454 NM_012173 ENSG00000147364 FBXO25 FBX25 F-box protein 25 protein-coding 10412 chr15 72226857 72226961 + 0 NA intron (NM_001206798, intron 1 of 10) intron (NM_001206798, intron 1 of 10) 2813 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 26177 chr7 44748739 44748869 + 0 NA promoter-TSS (NM_031449) promoter-TSS (NM_031449) -127 NM_031449 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 12455 chr17 40176857 40177068 + 0 NA promoter-TSS (NM_001303533) promoter-TSS (NM_001303533) -48 NM_001303533 51195 Hs.632254 NM_016339 ENSG00000108352 RAPGEFL1 Link-GEFII Rap guanine nucleotide exchange factor like 1 protein-coding 15718 chr2 68251155 68251259 + 0 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 1312 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 1194 chr1 84753639 84753743 + 0 NA Intergenic Intergenic -63134 NM_014021 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 7271 chr12 75130936 75131040 + 0 NA intron (NM_153748, intron 2 of 4) intron (NM_153748, intron 2 of 4) 78760 NM_001260498 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 4433 chr10 117221349 117221503 + 0 NA Intergenic Intergenic -19647 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 15901 chr2 85418393 85418497 + 0 NA promoter-TSS (NM_201594) promoter-TSS (NM_201594) -486 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 8934 chr14 45084001 45084132 + 0 NA promoter-TSS (NM_017922) promoter-TSS (NM_017922) -33 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 25023 chr6 111605846 111605950 + 0 NA promoter-TSS (NM_147200) promoter-TSS (NM_147200) 53 NM_147200 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 23897 chr6 3063763 3063908 + 0 NA promoter-TSS (NM_001317061) promoter-TSS (NM_001317061) -53 NM_003804 8737 Hs.519842 NM_003804 ENSG00000137275 RIPK1 RIP|RIP-1|RIP1 receptor interacting serine/threonine kinase 1 protein-coding 9458 chr14 80585336 80585440 + 0 NA intron (NM_152446, intron 18 of 23) intron (NM_152446, intron 18 of 23) 354152 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 10721 chr15 91706535 91706614 + 0 NA Intergenic Intergenic -147134 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 29652 chr9 97803539 97803671 + 0 NA Intergenic CpG -49650 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 17570 chr20 10074599 10074722 + 0 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 39661 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 12894 chr17 68035337 68035490 + 0 NA promoter-TSS (NM_001320611) promoter-TSS (NM_001320611) -189 NM_002266 3838 Hs.594238 NM_002266 ENSG00000182481 KPNA2 IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha karyopherin subunit alpha 2 protein-coding 17905 chr20 34621882 34621986 + 0 NA intron (NM_080476, intron 6 of 11) intron (NM_080476, intron 6 of 11) 55351 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 9115 chr14 59307015 59307072 + 0 NA intron (NM_014992, intron 2 of 24) intron (NM_014992, intron 2 of 24) 43602 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 14994 chr2 10452470 10452574 + 0 NA intron (NR_110597, intron 3 of 4) intron (NR_110597, intron 3 of 4) 2794 NR_110597 101929715 Hs.634550 NR_110597 LOC101929715 - uncharacterized LOC101929715 ncRNA 3532 chr10 31961765 31961869 + 0 NA Intergenic MER50-int|LTR|ERV1 -32941 NM_001270698 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 8502 chr13 99501316 99501505 + 0 NA promoter-TSS (NM_004800) promoter-TSS (NM_004800) 36 NM_004800 9375 Hs.607896 NM_004800 ENSG00000125304 TM9SF2 P76 transmembrane 9 superfamily member 2 protein-coding 26237 chr7 48140114 48140218 + 0 NA Intergenic LTR22A|LTR|ERVK -31294 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 24316 chr6 30213399 30213579 + 0 NA promoter-TSS (NM_001242783) promoter-TSS (NM_001242783) 5 NM_001242783 7726 Hs.485041 NM_003449 ENSG00000234127 TRIM26 AFP|RNF95|ZNF173 tripartite motif containing 26 protein-coding 21089 chr3 197906144 197906284 + 0 NA intron (NM_032263, intron 9 of 11) LTR41C|LTR|ERVL 43711 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 18090 chr20 45406652 45406745 + 0 NA 5' UTR (NM_001048223, exon 1 of 4) 5' UTR (NM_001048223, exon 1 of 4) 110 NM_001048224 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 18097 chr20 45518335 45518546 + 0 NA Intergenic Intergenic -2816 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 18271 chr20 54257206 54257310 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 49295 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 30999 chrX 118976737 118976841 + 0 NA 5' UTR (NM_001289109, exon 1 of 12) 5' UTR (NM_001289109, exon 1 of 12) 457 NM_001289109 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 11926 chr17 2749865 2750086 + 0 NA Intergenic CpG -1793 NR_031654 100302208 NR_031654 ENSG00000221200 MIR1253 MIRN1253|hsa-mir-1253 microRNA 1253 ncRNA 1097 chr1 68916590 68916694 + 0 NA Intergenic Intergenic -419421 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 10842 chr16 535774 535878 + 0 NA TTS (NR_049852) TTS (NR_049852) 510 NR_049852 100847028 NR_049852 ENSG00000266124 MIR5587 - microRNA 5587 ncRNA 19368 chr3 38829544 38829648 + 0 NA Intergenic Intergenic -35586 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 28813 chr8 143553678 143553727 + 0 NA 5' UTR (NM_001166237, exon 1 of 14) 5' UTR (NM_001166237, exon 1 of 14) 315 NM_001166237 79792 Hs.118983 NM_024736 ENSG00000104518 GSDMD DF5L|DFNA5L|FKSG10|GSDMDC1 gasdermin D protein-coding 16401 chr2 142745885 142746017 + 0 NA Intergenic AluJo|SINE|Alu -131675 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 838 chr1 47437639 47437743 + 0 NA promoter-TSS (NR_126355) promoter-TSS (NR_126355) -374 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 5964 chr11 102223887 102224038 + 0 NA intron (NM_001130145, intron 7 of 8) intron (NM_001130145, intron 7 of 8) -93488 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 8187 chr13 43132412 43132516 + 0 NA intron (NR_047013, intron 1 of 2) intron (NR_047013, intron 1 of 2) 19299 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 1121 chr1 72283728 72283832 + 0 NA Intergenic CpG -1186 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 5019 chr11 24516615 24516769 + 0 NA intron (NM_001252008, intron 1 of 11) LTR24C|LTR|ERV1 19722 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 8461 chr13 97122030 97122134 + 0 NA Intergenic MIRb|SINE|MIR 57540 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 6493 chr12 6167931 6168084 + 0 NA Intergenic MIR|SINE|MIR -31700 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 9087 chr14 57833480 57833584 + 0 NA intron (NM_001206920, intron 1 of 7) MER5A|DNA|hAT-Charlie 32342 NM_001306087 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 19680 chr3 81761547 81761700 + 0 NA 5' UTR (NM_000158, exon 1 of 16) 5' UTR (NM_000158, exon 1 of 16) 176 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 24790 chr6 73394686 73394790 + 0 NA 5' UTR (NM_018665, exon 1 of 17) 5' UTR (NM_018665, exon 1 of 17) 176 NM_018665 55510 Hs.125507 NM_018665 ENSG00000080007 DDX43 CT13|HAGE DEAD-box helicase 43 protein-coding 20892 chr3 188154069 188154078 + 0 NA promoter-TSS (NR_036497) promoter-TSS (NR_036497) 15 NR_036497 339929 Hs.596639 NR_036497 ENSG00000270959 LPP-AS2 MYCLo-5|MYCLo-6 LPP antisense RNA 2 ncRNA 9896 chr15 38817777 38817881 + 0 NA Intergenic Intergenic 121231 NM_207444 400359 Hs.448785 NM_207444 ENSG00000175779 C15orf53 - chromosome 15 open reading frame 53 protein-coding 3672 chr10 50418342 50418506 + 0 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -169814 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 15110 chr2 17901405 17901509 + 0 NA intron (NM_002252, intron 1 of 2) L2c|LINE|L2 22800 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 9040 chr14 54677414 54677518 + 0 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -77322 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 29948 chr9 115119005 115119179 + 0 NA promoter-TSS (NM_002160) promoter-TSS (NM_002160) -835 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 24509 chr6 38755328 38755433 + 0 NA intron (NM_001206927, intron 9 of 92) intron (NM_001206927, intron 9 of 92) 40039 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 29092 chr9 37422596 37422689 + 0 NA promoter-TSS (NM_012203) promoter-TSS (NM_012203) -68 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 15729 chr2 68936682 68936786 + 0 NA Intergenic Intergenic 16236 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 24962 chr6 105553259 105553417 + 0 NA Intergenic Intergenic -150214 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 4310 chr10 104937622 104937726 + 0 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -271458 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 14516 chr19 44051866 44052007 + 0 NA promoter-TSS (NM_013361) promoter-TSS (NM_013361) -75 NM_013361 7766 Hs.720813 NM_013361 ENSG00000178386 ZNF223 - zinc finger protein 223 protein-coding 27744 chr8 42266221 42266325 + 0 NA intron (NR_125823, intron 1 of 2) intron (NR_125823, intron 1 of 2) 4688 NR_125823 101929897 Hs.60288 NR_125823 ENSG00000253408 LOC101929897 - uncharacterized LOC101929897 ncRNA 28446 chr8 115219020 115219124 + 0 NA Intergenic MIRc|SINE|MIR 448940 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 2786 chr1 223364400 223364504 + 0 NA promoter-TSS (NM_017982) promoter-TSS (NM_017982) -250 NM_001037175 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 24433 chr6 34630121 34630225 + 0 NA intron (NM_022758, intron 2 of 3) MER44B|DNA|TcMar-Tigger -65981 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 27907 chr8 59617520 59617616 + 0 NA Intergenic Intergenic -498360 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 2325 chr1 198881353 198881457 + 0 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) -22252 NR_029626 406995 NR_029626 ENSG00000207759 MIR181A1 MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213 microRNA 181a-1 ncRNA 12204 chr17 20009215 20009353 + 0 NA promoter-TSS (NM_001243439) promoter-TSS (NM_001243439) -52 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 13178 chr17 82648430 82648639 + 0 NA promoter-TSS (NM_019613) promoter-TSS (NM_019613) 1 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 21822 chr4 139084226 139084326 + 0 NA 5' UTR (NM_001276459, exon 1 of 6) 5' UTR (NM_001276459, exon 1 of 6) 138 NM_006874 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 562 chr1 32760986 32761141 + 0 NA intron (NM_020888, intron 1 of 6) intron (NM_020888, intron 1 of 6) -4571 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 4924 chr11 16788158 16788227 + 0 NA 3' UTR (NM_175058, exon 23 of 23) 3' UTR (NM_175058, exon 23 of 23) 49591 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 9015 chr14 52951078 52951182 + 0 NA promoter-TSS (NM_001134999) promoter-TSS (NM_001134999) -33 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 10935 chr16 3880882 3880986 + 0 NA promoter-TSS (NM_001079846) promoter-TSS (NM_001079846) -814 NM_004380 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|RSTS CREB binding protein protein-coding 28923 chr9 12776369 12776564 + 0 NA intron (NM_203403, intron 1 of 1) intron (NM_203403, intron 1 of 1) 1453 NM_203403 286343 Hs.445356 NM_203403 ENSG00000153714 LURAP1L C9orf150|HYST0841|LRAP35b|bA3L8.2 leucine rich adaptor protein 1 like protein-coding 24693 chr6 52577298 52577327 + 0 NA promoter-TSS (NM_012288) promoter-TSS (NM_012288) 14 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 15826 chr2 74440478 74440609 + 0 NA promoter-TSS (NM_001015056) promoter-TSS (NM_001015056) 40 NM_033046 6242 Hs.192854 NM_033046 ENSG00000114993 RTKN - rhotekin protein-coding 2541 chr1 208219763 208219895 + 0 NA intron (NM_025179, intron 1 of 31) intron (NM_025179, intron 1 of 31) 24491 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 18228 chr20 52103635 52103739 + 0 NA intron (NM_199427, intron 5 of 8) intron (NM_199427, intron 5 of 8) 1797 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 5846 chr11 93000653 93000757 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 31082 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 2607 chr1 211577914 211578018 + 0 NA intron (NM_021194, intron 1 of 1) CpG 791 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 13825 chr18 80033784 80033865 + 0 NA promoter-TSS (NM_001171967) promoter-TSS (NM_001171967) 111 NM_001305564 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 30910 chrX 104803303 104803408 + 0 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 237040 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 3345 chr10 17023522 17023626 + 0 NA intron (NM_001081, intron 27 of 66) intron (NM_001081, intron 27 of 66) 106243 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 9592 chr14 94066314 94066418 + 0 NA intron (NM_020414, intron 2 of 8).2 L1PB1|LINE|L1 14846 NM_020414 57062 Hs.510328 NM_020414 ENSG00000089737 DDX24 - DEAD-box helicase 24 protein-coding 4839 chr11 12080234 12080388 + 0 NA Intergenic Intergenic -30265 NM_001346299 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 17415 chr20 308560 308664 + 0 NA Intergenic Intergenic 11049 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 24850 chr6 82247727 82247886 + 0 NA promoter-TSS (NM_001300906) promoter-TSS (NM_001300906) -52 NM_001300906 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 10974 chr16 8370758 8370862 + 0 NA Intergenic Intergenic 219028 NM_001290098 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 4374 chr10 112915639 112915809 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -34526 NM_001198531 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 22807 chr5 82278314 82278418 + 0 NA promoter-TSS (NM_001025) promoter-TSS (NM_001025) 50 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 S23 ribosomal protein S23 protein-coding 30011 chr9 119963897 119964001 + 0 NA Intergenic Intergenic 28889 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 14452 chr19 40425937 40426041 + 0 NA promoter-TSS (NM_013376) promoter-TSS (NM_013376) 36 NM_013376 29950 Hs.269898 NM_013376 ENSG00000197019 SERTAD1 SEI1|TRIP-Br1 SERTA domain containing 1 protein-coding 13171 chr17 82458513 82458653 + 0 NA promoter-TSS (NM_031968) promoter-TSS (NM_031968) -81 NM_031968 26502 Hs.256526 NM_012336 ENSG00000141562 NARF IOP2 nuclear prelamin A recognition factor protein-coding 14139 chr19 12495323 12495450 + 0 NA Intergenic CpG -10568 NM_152601 163051 Hs.631623 NM_152601 ENSG00000196826 ZNF709 - zinc finger protein 709 protein-coding 5615 chr11 71448378 71448525 + 0 NA promoter-TSS (NM_001360) promoter-TSS (NM_001360) -20 NM_001360 1717 Hs.503134 NM_001360 ENSG00000172893 DHCR7 SLOS 7-dehydrocholesterol reductase protein-coding 22723 chr5 74017172 74017316 + 0 NA Intergenic Intergenic 203726 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 7623 chr12 108912078 108912181 + 0 NA 3' UTR (NM_018711, exon 16 of 16) 3' UTR (NM_018711, exon 16 of 16) 32048 NM_001917 1610 Hs.113227 NM_001917 ENSG00000110887 DAO DAAO|DAMOX|OXDA D-amino acid oxidase protein-coding 21673 chr4 106444823 106444927 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -77440 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 10745 chr15 93703535 93703639 + 0 NA Intergenic Intergenic -152973 NR_120321 101927153 Hs.371900 NR_120321 LOC101927153 - uncharacterized LOC101927153 ncRNA 26685 chr7 99562987 99563091 + 0 NA intron (NM_001085367, intron 4 of 4) intron (NM_001085367, intron 4 of 4) 4214 NM_001009958 79027 Hs.599798 NM_024061 ENSG00000197343 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding 18649 chr22 20495877 20495998 + 0 NA promoter-TSS (NM_032775) promoter-TSS (NM_032775) -54 NM_032775 84861 Hs.517419 NM_032775 ENSG00000099910 KLHL22 KELCHL kelch like family member 22 protein-coding 6717 chr12 19431968 19432136 + 0 NA Intergenic LTR88b|LTR|Gypsy? -7622 NM_001114176 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 3373 chr10 21174548 21174552 + 0 NA promoter-TSS (NM_001173484) promoter-TSS (NM_001173484) 248 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 26602 chr7 93115874 93115994 + 0 NA intron (NM_017654, intron 1 of 2) intron (NM_017654, intron 1 of 2) 2089 NM_001193307 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 12001 chr17 6375075 6375227 + 0 NA Intergenic Intergenic 59981 NM_001285402 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 26577 chr7 91558091 91558244 + 0 NA Intergenic Intergenic 293699 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 14281 chr19 18951711 18951821 + 0 NA Intergenic L2c|LINE|L2 -10534 NM_004838 9454 Hs.720208 NM_004838 ENSG00000051128 HOMER3 HOMER-3|VESL3 homer scaffolding protein 3 protein-coding 6067 chr11 111426721 111426828 + 0 NA Intergenic Intergenic -8588 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 12182 chr17 18235962 18236042 + 0 NA intron (NM_004140, intron 11 of 22) intron (NM_004140, intron 11 of 22) 10380 NM_004140 3996 Hs.513983 NM_004140 ENSG00000131899 LLGL1 DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1 LLGL1, scribble cell polarity complex component protein-coding 1343 chr1 94648299 94648464 + 0 NA Intergenic Intergenic 97519 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 27082 chr7 138195469 138195573 + 0 NA Intergenic LTR16B2|LTR|ERVL 71763 NR_039678 100616226 NR_039678 MIR4468 - microRNA 4468 ncRNA 14261 chr19 18281796 18281946 + 0 NA promoter-TSS (NM_001286968) promoter-TSS (NM_001286968) -206 NR_036155 100422833 NR_036155 ENSG00000267959 MIR3188 mir-3188 microRNA 3188 ncRNA 2655 chr1 213779348 213779452 + 0 NA Intergenic Intergenic -145349 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 7234 chr12 66824309 66824440 + 0 NA Intergenic Intergenic -145229 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 GRIP glutamate receptor interacting protein 1 protein-coding 18681 chr22 23070087 23070191 + 0 NA promoter-TSS (NM_002073) promoter-TSS (NM_002073) -344 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ - G protein subunit alpha z protein-coding 29879 chr9 111959689 111959793 + 0 NA Intergenic Intergenic 27641 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 29546 chr9 92293652 92293756 + 0 NA promoter-TSS (NM_002161) promoter-TSS (NM_002161) 52 NM_013417 3376 Hs.445403 NM_002161 ENSG00000196305 IARS GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785 isoleucyl-tRNA synthetase protein-coding 6241 chr11 122661673 122661764 + 0 NA intron (NM_032873, intron 1 of 13) MIRc|SINE|MIR 6028 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 7722 chr12 118135978 118136140 + 0 NA 5' UTR (NM_002567, exon 1 of 4) 5' UTR (NM_002567, exon 1 of 4) 175 NM_002567 5037 Hs.433863 NM_002567 ENSG00000089220 PEBP1 HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP phosphatidylethanolamine binding protein 1 protein-coding 17630 chr20 12984973 12985151 + 0 NA Intergenic Intergenic -23917 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 12065 chr17 8057800 8057922 + 0 NA Intergenic Intergenic 18821 NM_001141 247 Hs.111256 NM_001141 ENSG00000179593 ALOX15B 15-LOX-2 arachidonate 15-lipoxygenase, type B protein-coding 21115 chr4 2009201 2009342 + 0 NA promoter-TSS (NM_005663) promoter-TSS (NM_005663) -36 NM_005663 7469 Hs.21771 NM_005663 ENSG00000185049 NELFA NELF-A|P/OKcl.15|WHSC2 negative elongation factor complex member A protein-coding 16862 chr2 196171509 196171648 + 0 NA promoter-TSS (NM_004226) promoter-TSS (NM_004226) 34 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 4110 chr10 95260704 95260808 + 0 NA intron (NM_020992, intron 4 of 6) intron (NM_020992, intron 4 of 6) 30392 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 15925 chr2 86393846 86393950 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -47250 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 26208 chr7 46544577 46544687 + 0 NA Intergenic PABL_B-int|LTR|ERV1 152490 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 28760 chr8 140393894 140394051 + 0 NA intron (NM_031466, intron 7 of 22) intron (NM_031466, intron 7 of 22) 63790 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 27378 chr8 10654691 10654822 + 0 NA intron (NM_178857, intron 1 of 3) intron (NM_178857, intron 1 of 3) 351 NM_178857 94137 Hs.33538 NM_178857 ENSG00000183638 RP1L1 DCDC4B RP1 like 1 protein-coding 20618 chr3 169765069 169765195 + 0 NA promoter-TSS (NR_001566) promoter-TSS (NR_001566) -72 NR_001566 7012 Hs.436182 NR_001566 ENSG00000270141 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 3576 chr10 35127004 35127108 + 0 NA promoter-TSS (NM_181571) promoter-TSS (NM_181571) 215 NR_051975 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 19260 chr3 24156584 24156673 + 0 NA intron (NM_001252634, intron 6 of 11) intron (NM_001252634, intron 6 of 11) 5304 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 1093 chr1 68342787 68342944 + 0 NA Intergenic Intergenic 107094 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|rd12|sRPE65 RPE65, retinoid isomerohydrolase protein-coding 12250 chr17 27893274 27893410 + 0 NA promoter-TSS (NM_001076680) promoter-TSS (NM_001076680) 41 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 9411 chr14 76812806 76812925 + 0 NA promoter-TSS (NM_015305) promoter-TSS (NM_015305) 75 NM_015305 23357 Hs.497448 NM_015305 ENSG00000013523 ANGEL1 Ccr4e|KIAA0759 angel homolog 1 protein-coding 22657 chr5 67004012 67004149 + 0 NA promoter-TSS (NM_001297651) promoter-TSS (NM_001297651) 74 NR_111908 101928794 Hs.672435 NR_111908 MAST4-AS1 - MAST4 antisense RNA 1 ncRNA 6955 chr12 48852186 48852320 + 0 NA promoter-TSS (NM_004818) promoter-TSS (NM_004818) -79 NM_004818 9416 Hs.130098 NM_004818 ENSG00000174243 DDX23 PRPF28|SNRNP100|U5-100K|U5-100KD|prp28 DEAD-box helicase 23 protein-coding 8061 chr13 30740201 30740300 + 0 NA intron (NM_001204406, intron 2 of 5) L3|LINE|CR1 4742 NM_001629 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 624 chr1 36150921 36151053 + 0 NA intron (NM_001270895, intron 1 of 4) intron (NM_001270895, intron 1 of 4) -1473 NM_014408 27095 Hs.523131 NM_014408 ENSG00000054116 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 8856 chr14 35122498 35122648 + 0 NA promoter-TSS (NM_001305155) promoter-TSS (NM_001305155) 21 NM_001256681 9692 Hs.458487 NM_014672 ENSG00000100890 KIAA0391 MRPP3|PRORP KIAA0391 protein-coding 11508 chr16 67806660 67806775 + 0 NA promoter-TSS (NM_001320239) promoter-TSS (NM_001320239) -65 NM_001320238 57610 Hs.368569 NM_020850 ENSG00000141084 RANBP10 - RAN binding protein 10 protein-coding 23867 chr6 1436870 1436974 + 0 NA Intergenic Intergenic -46511 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 371 chr1 24203532 24203686 + 0 NA intron (NR_027087, intron 2 of 2) intron (NR_027087, intron 2 of 2) 3369 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LOC284632 - uncharacterized LOC284632 ncRNA 31130 chrX 149495678 149495884 + 0 NA intron (NR_104128, intron 6 of 8) intron (NR_104128, intron 6 of 8) 9573 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 23556 chr5 151896353 151896365 + 0 NA intron (NM_001146040, intron 1 of 8) intron (NM_001146040, intron 1 of 8) 28477 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 10120 chr15 52558303 52558467 + 0 NA intron (NM_001306195, intron 2 of 3) AluJb|SINE|Alu 10447 NM_001330309 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 1041 chr1 65174646 65174803 + 0 NA intron (NM_001330616, intron 1 of 4) intron (NM_001330616, intron 1 of 4) 25721 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 6872 chr12 39443231 39443446 + 0 NA promoter-TSS (NM_001173463) promoter-TSS (NM_001173463) 52 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 7674 chr12 113040742 113040835 + 0 NA Intergenic Intergenic -17069 NM_004416 1840 Hs.372152 NM_004416 ENSG00000135144 DTX1 hDx-1 deltex E3 ubiquitin ligase 1 protein-coding 3254 chr10 6593499 6593603 + 0 NA Intergenic Intergenic -12905 NM_001323265 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 21701 chr4 110664185 110664285 + 0 NA Intergenic Intergenic -22112 NM_001204398 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 27517 chr8 22673240 22673259 + 0 NA Intergenic Intergenic -4101 NM_018688 55909 Hs.433722 NM_018688 ENSG00000147439 BIN3 - bridging integrator 3 protein-coding 19647 chr3 69204102 69204252 + 0 NA intron (NM_015123, intron 11 of 22) intron (NM_015123, intron 11 of 22) -81582 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 2109 chr1 176696132 176696236 + 0 NA intron (NM_020318, intron 7 of 22) intron (NM_020318, intron 7 of 22) 233013 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 25510 chr7 67987 68136 + 0 NA Intergenic L2a|LINE|L2 81377 NR_134325 102723672 Hs.605204 NR_134325 LOC102723672 - uncharacterized LOC102723672 ncRNA 22897 chr5 94362481 94362585 + 0 NA intron (NM_001145678, intron 20 of 20) L2c|LINE|L2 -250834 NM_001163418 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21 family with sequence similarity 172 member A protein-coding 5133 chr11 34358006 34358116 + 0 NA promoter-TSS (NM_145804) promoter-TSS (NM_145804) -53 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 6544 chr12 6938013 6938161 + 0 NA intron (NM_001940, intron 6 of 9) intron (NM_001940, intron 6 of 9) -5351 NM_001301836 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 13420 chr18 34358294 34358398 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger -134795 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 14200 chr19 15331226 15331330 + 0 NA intron (NM_001330384, intron 1 of 11) intron (NM_001330384, intron 1 of 11) 1265 NM_001330384 23476 Hs.187763 NM_014299 ENSG00000141867 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 3539 chr10 32352701 32352907 + 0 NA intron (NR_104163, intron 1 of 1) MIRb|SINE|MIR 5440 NR_104163 102031319 Hs.128132 NR_104163 ENSG00000229327 LOC102031319 - uncharacterized LOC102031319 ncRNA 6311 chr11 127862515 127862619 + 0 NA Intergenic LTR32|LTR|ERVL 591497 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 19940 chr3 115789070 115789084 + 0 NA Intergenic L2b|LINE|L2 165773 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 345 chr1 23377435 23377539 + 0 NA Intergenic Intergenic -7623 NM_001077195 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 27542 chr8 23554309 23554435 + 0 NA intron (NM_001317813, intron 2 of 4) intron (NM_001317813, intron 2 of 4) 25577 NM_016612 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 27772 chr8 47738205 47738252 + 0 NA promoter-TSS (NM_005195) promoter-TSS (NM_005195) -64 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 27157 chr7 143249009 143249116 + 0 NA Intergenic L1M3b|LINE|L1 -14367 NM_001143679 373156 Hs.390667 NM_015917 ENSG00000197448 GSTK1 GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1 glutathione S-transferase kappa 1 protein-coding 613 chr1 35641499 35641596 + 0 NA promoter-TSS (NM_001199779) promoter-TSS (NM_001199779) 4 NM_001199779 5690 Hs.471441 NM_002794 ENSG00000126067 PSMB2 HC7-I proteasome subunit beta 2 protein-coding 23954 chr6 6820835 6821041 + 0 NA Intergenic Intergenic -198112 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 28679 chr8 130263875 130263979 + 0 NA intron (NM_001247996, intron 4 of 30) MIRc|SINE|MIR 32606 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 17120 chr2 219274022 219274173 + 0 NA Intergenic Intergenic -5221 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 9184 chr14 63641983 63642087 + 0 NA promoter-TSS (NM_001008726) promoter-TSS (NM_001008726) -112 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 5181 chr11 36594358 36594462 + 0 NA promoter-TSS (NM_001276723) promoter-TSS (NM_001276723) -83 NM_001276727 119710 Hs.159376 NM_138787 ENSG00000166352 C11orf74 HEPIS|NWC chromosome 11 open reading frame 74 protein-coding 7970 chr13 23889378 23889522 + 0 NA promoter-TSS (NM_005932) promoter-TSS (NM_005932) -2 NM_005932 4285 Hs.507498 NM_005932 ENSG00000027001 MIPEP COXPD31|HMIP|MIP mitochondrial intermediate peptidase protein-coding 15745 chr2 69643774 69643878 + 0 NA promoter-TSS (NM_014911) promoter-TSS (NM_014911) 19 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 23286 chr5 136957570 136957674 + 0 NA Intergenic MER89-int|LTR|ERV1 -170575 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 19641 chr3 69013730 69013785 + 0 NA non-coding (NR_103826, exon 1 of 16) non-coding (NR_103826, exon 1 of 16) 137 NM_001278689 285203 Hs.518059 NM_173654 ENSG00000163378 EOGT AER61|AOS4|C3orf64|EOGT1 EGF domain specific O-linked N-acetylglucosamine transferase protein-coding 6841 chr12 32595335 32595438 + 0 NA intron (NM_001330374, intron 3 of 15) MLT1L|LTR|ERVL-MaLR 61093 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 2691 chr1 216464616 216464769 + 0 NA Intergenic MIR|SINE|MIR -41296 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 15693 chr2 66390954 66391058 + 0 NA non-coding (NR_130931, exon 3 of 3) non-coding (NR_130931, exon 3 of 3) 7700 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 1071 chr1 67575866 67575961 + 0 NA Intergenic Intergenic -109264 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 30369 chr9 136866317 136866461 + 0 NA promoter-TSS (NM_001281297) promoter-TSS (NM_001281297) -53 NM_001281299 8721 Hs.174050 NM_003792 ENSG00000107223 EDF1 CFAP280|EDF-1|MBF1 endothelial differentiation related factor 1 protein-coding 3058 chr1 239717506 239717610 + 0 NA intron (NR_103776, intron 1 of 2) intron (NR_103776, intron 1 of 2) 1561 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 12748 chr17 57256524 57256628 + 0 NA promoter-TSS (NM_001322251) promoter-TSS (NM_001322251) 6 NM_001322251 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 29245 chr9 73667925 73668029 + 0 NA Intergenic L1M4a2|LINE|L1 516246 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 27141 chr7 142508417 142508521 + 0 NA Intergenic L2b|LINE|L2 -157830 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 28420 chr8 109292597 109292729 + 0 NA intron (NM_032869, intron 4 of 9) intron (NM_032869, intron 4 of 9) 37270 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 4331 chr10 110008054 110008097 + 0 NA 5' UTR (NM_001320594, exon 1 of 16) 5' UTR (NM_001320594, exon 1 of 16) 139 NM_001121 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 14624 chr19 47608114 47608218 + 0 NA promoter-TSS (NM_015711) promoter-TSS (NM_015711) -30 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 28200 chr8 93873988 93874121 + 0 NA Intergenic MER41B|LTR|ERV1 42065 NR_039602 100616169 NR_039602 ENSG00000264448 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 10569 chr15 82530649 82530803 + 0 NA Intergenic Intergenic 9731 NR_111943 6218 Hs.433427 NM_001021 ENSG00000182774 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 16493 chr2 156341812 156341950 + 0 NA Intergenic CpG -9106 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 11131 chr16 23142428 23142563 + 0 NA intron (NM_020718, intron 1 of 15) intron (NM_020718, intron 1 of 15) 6775 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 5388 chr11 62805355 62805517 + 0 NA promoter-TSS (NM_006362) promoter-TSS (NM_006362) 56 NM_006362 10482 Hs.523739 NM_006362 ENSG00000162231 NXF1 MEX67|TAP nuclear RNA export factor 1 protein-coding 26688 chr7 99919511 99919680 + 0 NA promoter-TSS (NM_033017) promoter-TSS (NM_033017) 5 NM_033017 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 25822 chr7 21580338 21580475 + 0 NA intron (NM_001277115, intron 8 of 81) intron (NM_001277115, intron 8 of 81) 37191 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 6602 chr12 11580644 11580748 + 0 NA Intergenic Intergenic 32666 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 29330 chr9 78871766 78871781 + 0 NA Intergenic Intergenic 273893 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 22420 chr5 40382136 40382273 + 0 NA Intergenic Intergenic -297726 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 13780 chr18 74496225 74496274 + 0 NA promoter-TSS (NM_018235) promoter-TSS (NM_018235) -16 NM_018235 55748 Hs.149185 NM_018235 ENSG00000133313 CNDP2 CN2|CPGL|HEL-S-13|HsT2298|PEPA CNDP dipeptidase 2 (metallopeptidase M20 family) protein-coding 5817 chr11 88179347 88179383 + 0 NA Intergenic Intergenic 2863 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 27668 chr8 33895332 33895353 + 0 NA Intergenic Intergenic -295236 NM_024025 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 13599 chr18 54109233 54109337 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger 113127 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 30505 chrX 13669439 13669543 + 0 NA Intergenic Intergenic 16300 NM_152634 170082 Hs.222855 NM_152634 ENSG00000176896 TCEANC - transcription elongation factor A N-terminal and central domain containing protein-coding 30480 chrX 10015102 10015253 + 0 NA promoter-TSS (NM_015691) promoter-TSS (NM_015691) -578 NM_015691 55841 Hs.527524 NM_015691 ENSG00000047644 WWC3 BM042 WWC family member 3 protein-coding 28454 chr8 115978380 115978484 + 0 NA intron (NR_046215, intron 7 of 13) AmnSINE1|SINE|5S-Deu-L2 -309404 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 28492 chr8 118439784 118439896 + 0 NA exon (NM_207506, exon 3 of 4) exon (NM_207506, exon 3 of 4) -181161 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 23341 chr5 140175070 140175230 + 0 NA promoter-TSS (NM_032412) promoter-TSS (NM_032412) 82 NM_032412 84418 Hs.529798 NM_032412 ENSG00000120306 CYSTM1 C5orf32|ORF1-FL49 cysteine rich transmembrane module containing 1 protein-coding 23230 chr5 133439930 133440052 + 0 NA intron (NM_015082, intron 3 of 15) MamTip2|DNA|hAT-Tip100 -12285 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 179 chr1 12437076 12437158 + 0 NA intron (NM_018156, intron 64 of 68) intron (NM_018156, intron 64 of 68) -70129 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 9656 chr14 99575136 99575205 + 0 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 29220 NM_001144995 317762 Hs.709288 NM_001144995 ENSG00000205476 CCDC85C - coiled-coil domain containing 85C protein-coding 30923 chrX 106672657 106672806 + 0 NA intron (NM_018015, intron 13 of 13) L1M1|LINE|L1 -21107 NM_024539 79589 Hs.496542 NM_024539 ENSG00000133135 RNF128 GRAIL ring finger protein 128, E3 ubiquitin protein ligase protein-coding 21399 chr4 56977573 56977677 + 0 NA promoter-TSS (NM_032313) promoter-TSS (NM_032313) 35 NM_032313 84273 Hs.8715 NM_032313 ENSG00000084092 NOA1 C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1 nitric oxide associated 1 protein-coding 17497 chr20 4015673 4015818 + 0 NA promoter-TSS (NM_001321749) promoter-TSS (NM_001321749) -154 NM_001321749 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 8226 chr13 46553032 46553163 + 0 NA promoter-TSS (NM_015116) promoter-TSS (NM_015116) -64 NM_001164211 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 3705 chr10 57696858 57696962 + 0 NA Intergenic Intergenic -392351 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 6760 chr12 26153487 26153591 + 0 NA Intergenic L2a|LINE|L2 -28469 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 23351 chr5 140557507 140557536 + 0 NA promoter-TSS (NR_045587) promoter-TSS (NR_045587) -65 NR_045587 10011 Hs.653135 NM_001035235 ENSG00000213523 SRA1 SRA|SRAP|STRAA1|pp7684 steroid receptor RNA activator 1 protein-coding 23125 chr5 124742311 124742467 + 0 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 2723 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 16766 chr2 181785891 181785995 + 0 NA Intergenic MIRb|SINE|MIR -105278 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 27283 chr7 157138671 157138829 + 0 NA promoter-TSS (NM_014671) promoter-TSS (NM_014671) -211 NM_014671 9690 Hs.118351 NM_014671 ENSG00000009335 UBE3C HECTH2 ubiquitin protein ligase E3C protein-coding 2499 chr1 206203090 206203243 + 0 NA promoter-TSS (NM_001123168) promoter-TSS (NM_001123168) -291 NM_001123168 729533 Hs.339665 NM_001123168 ENSG00000196550 FAM72A LMPIP|Ugene family with sequence similarity 72 member A protein-coding 29718 chr9 101480607 101480711 + 0 NA intron (NR_121574, intron 2 of 2) intron (NR_121574, intron 2 of 2) 6111 NM_001303108 84302 Hs.388742 NM_032342 ENSG00000165152 TMEM246 C9orf125 transmembrane protein 246 protein-coding 28681 chr8 130326234 130326258 + 0 NA intron (NM_001247996, intron 4 of 30) intron (NM_001247996, intron 4 of 30) -29713 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 13232 chr18 3711074 3711247 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 107423 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 29724 chr9 103804442 103804513 + 0 NA Intergenic L4_A_Mam|LINE|RTE-X -195232 NR_109803 101928523 NR_109803 LOC101928523 - uncharacterized LOC101928523 ncRNA 21747 chr4 119454740 119454789 + 0 NA promoter-TSS (NR_135112) promoter-TSS (NR_135112) -19 NR_037630 645513 Hs.677546 NR_037630 ENSG00000245958 LOC645513 - septin 7 pseudogene pseudo 13329 chr18 23719749 23719897 + 0 NA intron (NM_001127717, intron 2 of 73) intron (NM_001127717, intron 2 of 73) 30380 NM_001127717 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 3882 chr10 73096761 73096910 + 0 NA 5' UTR (NM_000917, exon 1 of 15) 5' UTR (NM_000917, exon 1 of 15) 139 NM_001142595 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 25963 chr7 30206607 30206711 + 0 NA Intergenic Intergenic 71723 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 1830 chr1 156003429 156003558 + 0 NA Intergenic Intergenic 17474 NM_003145 6746 Hs.74564 NM_003145 ENSG00000163479 SSR2 HSD25|TLAP|TRAP-BETA|TRAPB signal sequence receptor subunit 2 protein-coding 26152 chr7 43636191 43636340 + 0 NA intron (NR_047701, intron 7 of 7) intron (NR_047701, intron 7 of 7) 53172 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 26181 chr7 44848055 44848159 + 0 NA promoter-TSS (NM_138635) promoter-TSS (NM_138635) 19 NM_201517 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 3060 chr1 239816189 239816293 + 0 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 83631 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 3917 chr10 75111244 75111485 + 0 NA promoter-TSS (NM_001174156) promoter-TSS (NM_001174156) -271 NM_001174156 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 28869 chr9 607539 607661 + 0 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) -99206 NM_153186 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 3167 chr1 248906631 248906735 + 0 NA intron (NM_170725, intron 1 of 2) CpG 440 NM_170725 267002 Hs.602037 NM_170725 ENSG00000185220 PGBD2 - piggyBac transposable element derived 2 protein-coding 14499 chr19 42423566 42423676 + 0 NA promoter-TSS (NR_073179) promoter-TSS (NR_073179) -134 NR_073179 100996307 Hs.466840 NR_073179 ENSG00000213904 LIPE-AS1 - LIPE antisense RNA 1 ncRNA 19359 chr3 38137148 38137276 + 0 NA promoter-TSS (NM_001130410) promoter-TSS (NM_001130410) 30 NR_024024 30 Hs.643487 NM_001607 ENSG00000060971 ACAA1 ACAA|PTHIO|THIO acetyl-CoA acyltransferase 1 protein-coding 6433 chr12 751262 751401 + 0 NA Intergenic Intergenic -1592 NM_001184985 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 20366 chr3 149300312 149300452 + 0 NA Intergenic MER72B|LTR|ERV1 33090 NM_001184723 116441 Hs.22026 NM_138786 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 13841 chr19 782670 782774 + 0 NA Intergenic Intergenic -14670 NM_031991 5725 Hs.172550 NM_002819 ENSG00000011304 PTBP1 HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB polypyrimidine tract binding protein 1 protein-coding 12008 chr17 6552123 6552280 + 0 NA intron (NM_001165966, intron 1 of 18) intron (NM_001165966, intron 1 of 18) 4356 NM_001165966 83394 Hs.183983 NM_031220 ENSG00000091622 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 29054 chr9 34377057 34377076 + 0 NA promoter-TSS (NM_020702) promoter-TSS (NM_020702) -170 NM_020702 57462 Hs.522083 NM_020702 ENSG00000164976 KIAA1161 NET37 KIAA1161 protein-coding 16824 chr2 190571867 190571971 + 0 NA Intergenic Intergenic -37177 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 28052 chr8 77000186 77000318 + 0 NA promoter-TSS (NM_000318) promoter-TSS (NM_000318) 36 NM_001079867 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 20835 chr3 185200766 185200891 + 0 NA intron (NM_001966, intron 6 of 6) L2|LINE|L2 37927 NR_038990 339926 Hs.567848 NR_038990 ENSG00000223358 EHHADH-AS1 - EHHADH antisense RNA 1 ncRNA 7453 chr12 94621815 94621919 + 0 NA intron (NM_020698, intron 1 of 3) intron (NM_020698, intron 1 of 3) -5716 NM_001301036 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 28844 chr8 144685883 144685946 + 0 NA promoter-TSS (NM_001308208) promoter-TSS (NM_001308208) -102 NM_001308208 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 17488 chr20 3781482 3781586 + 0 NA promoter-TSS (NM_015417) promoter-TSS (NM_015417) -79 NM_015417 25876 Hs.72620 NM_015417 ENSG00000101222 SPEF1 C20orf28|CLAMP|SPEF1A sperm flagellar 1 protein-coding 15534 chr2 53104449 53104548 + 0 NA Intergenic Intergenic -401883 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 30130 chr9 126985961 126986065 + 0 NA intron (NM_001190728, intron 3 of 16) intron (NM_001190728, intron 3 of 16) 23788 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 23118 chr5 124057249 124057402 + 0 NA Intergenic Intergenic 381195 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 8937 chr14 45253187 45253274 + 0 NA 5' UTR (NM_018353, exon 1 of 17) 5' UTR (NM_018353, exon 1 of 17) 172 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 18430 chr21 17537376 17537480 + 0 NA intron (NM_001207063, intron 1 of 4) intron (NM_001207063, intron 1 of 4) 24522 NM_001207063 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR coxsackie virus and adenovirus receptor protein-coding 10987 chr16 9068493 9068597 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR -23135 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 11893 chr17 1456218 1456358 + 0 NA promoter-TSS (NM_005206) promoter-TSS (NM_005206) -21 NM_005206 1398 Hs.461896 NM_005206 ENSG00000167193 CRK CRKII|p38 CRK proto-oncogene, adaptor protein protein-coding 14638 chr19 48203864 48204044 + 0 NA Intergenic CpG 33262 NM_199341 374920 Hs.664054 NM_199341 ENSG00000185453 C19orf68 - chromosome 19 open reading frame 68 protein-coding 2620 chr1 211928361 211928537 + 0 NA Intergenic Intergenic 97488 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LOC102723727 - uncharacterized LOC102723727 ncRNA 9485 chr14 85233874 85233978 + 0 NA Intergenic L2c|LINE|L2 -153349 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 8137 chr13 39528150 39528254 + 0 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 75017 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFP - lipoma HMGIC fusion partner protein-coding 29383 chr9 83472390 83472494 + 0 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) -4700 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 27131 chr7 141915766 141915870 + 0 NA Intergenic Intergenic -3058 NM_001001656 130075 Hs.690171 NM_001001656 ENSG00000258083 OR9A4 - olfactory receptor family 9 subfamily A member 4 protein-coding 21726 chr4 114807945 114807979 + 0 NA Intergenic L1PA17|LINE|L1 151203 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 13494 chr18 45722984 45723138 + 0 NA Intergenic Intergenic -1062 NM_001308278 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 4022 chr10 86521790 86521925 + 0 NA promoter-TSS (NM_001318328) promoter-TSS (NM_001318328) -73 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 14414 chr19 38336421 38336517 + 0 NA intron (NM_021185, intron 1 of 28) CpG 666 NM_021185 57828 Hs.324335 NM_021185 ENSG00000099338 CATSPERG C19orf15 cation channel sperm associated auxiliary subunit gamma protein-coding 10279 chr15 64574308 64574436 + 0 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 74952 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 15785 chr2 71498384 71498498 + 0 NA intron (NM_001130981, intron 3 of 55) LTR8|LTR|ERV1 31739 NM_001130987 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 2138 chr1 179025705 179025867 + 0 NA promoter-TSS (NM_014864) promoter-TSS (NM_014864) -18 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B, glycosaminoglycan xylosylkinase protein-coding 25875 chr7 24820929 24821075 + 0 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -62982 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 DFNA5 ICERE-1 DFNA5, deafness associated tumor suppressor protein-coding 6479 chr12 5167058 5167162 + 0 NA Intergenic Intergenic 76041 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 18354 chr20 59988226 59988330 + 0 NA intron (NM_177980, intron 8 of 17) intron (NM_177980, intron 8 of 17) -8084 NM_021810 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 10093 chr15 51622234 51622338 + 0 NA intron (NM_015263, intron 1 of 42) CpG 484 NM_015263 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 PEPNS|RC3 Dmx like 2 protein-coding 7376 chr12 88242247 88242351 + 0 NA Intergenic Intergenic 100003 NM_181783 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane and tetratricopeptide repeat containing 3 protein-coding 11461 chr16 65415639 65415743 + 0 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 160609 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 21340 chr4 48780356 48780494 + 0 NA promoter-TSS (NM_015030) promoter-TSS (NM_015030) -126 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 3043 chr1 237761123 237761227 + 0 NA intron (NM_001035, intron 84 of 104) intron (NM_001035, intron 84 of 104) -101000 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 23161 chr5 128083647 128083688 + 0 NA promoter-TSS (NM_001046) promoter-TSS (NM_001046) -124 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 20183 chr3 133805698 133805856 + 0 NA 5' UTR (NM_021203, exon 2 of 8) 5' UTR (NM_021203, exon 2 of 8) 21744 NM_021203 58477 Hs.12152 NM_021203 ENSG00000144867 SRPRB APMCF1 SRP receptor beta subunit protein-coding 18220 chr20 51687161 51687265 + 0 NA intron (NM_006045, intron 9 of 27) intron (NM_006045, intron 9 of 27) 81198 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 4228 chr10 101042840 101042969 + 0 NA Intergenic CpG 11665 NM_030971 81855 Hs.283844 NM_030971 ENSG00000107819 SFXN3 BA108L7.2|SFX3 sideroflexin 3 protein-coding 1230 chr1 86547038 86547077 + 0 NA promoter-TSS (NM_012128) promoter-TSS (NM_012128) -19 NR_024602 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 21485 chr4 78567198 78567342 + 0 NA intron (NM_005139, intron 2 of 12) MLT1C|LTR|ERVL-MaLR 15682 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 24903 chr6 89081617 89081747 + 0 NA intron (NM_006813, intron 1 of 1) CpG 972 NM_006813 10957 Hs.75969 NM_006813 ENSG00000146278 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline rich nuclear receptor coactivator 1 protein-coding 2793 chr1 223712445 223712549 + 0 NA promoter-TSS (NM_001748) promoter-TSS (NM_001748) 80 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 29921 chr9 114108042 114108192 + 0 NA Intergenic Intergenic -9060 NM_138424 113220 Hs.28149 NM_138424 ENSG00000136883 KIF12 - kinesin family member 12 protein-coding 6155 chr11 118275329 118275461 + 0 NA Intergenic L2c|LINE|L2 -10859 NM_144765 10205 Hs.116651 NM_005797 ENSG00000149573 MPZL2 EVA|EVA1 myelin protein zero like 2 protein-coding 6387 chr11 132134407 132134549 + 0 NA intron (NM_001144058, intron 1 of 7) L1PB1|LINE|L1 -149824 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 11789 chr16 85395602 85395707 + 0 NA Intergenic Intergenic -89329 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 14147 chr19 12775012 12775135 + 0 NA intron (NM_001100176, intron 1 of 21) CpG 547 NM_001100176 29911 Hs.30792 NM_013312 ENSG00000095066 HOOK2 HK2 hook microtubule tethering protein 2 protein-coding 23972 chr6 7541359 7541431 + 0 NA promoter-TSS (NM_004415) promoter-TSS (NM_004415) -180 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 26870 chr7 116354909 116354994 + 0 NA Intergenic Intergenic -68224 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 24193 chr6 24646052 24646187 + 0 NA promoter-TSS (NM_001168375) promoter-TSS (NM_001168375) 36 NM_001168374 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 DYLX2|DYX2|NMIG KIAA0319 protein-coding 18266 chr20 54123657 54123852 + 0 NA Intergenic Intergenic 50223 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 5865 chr11 93948287 93948391 + 0 NA Intergenic MER103C|DNA|hAT-Charlie -72873 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin like 1 protein-coding 30931 chrX 107206386 107206395 + 0 NA promoter-TSS (NM_017681) promoter-TSS (NM_017681) 50 NM_017681 54830 Hs.163629 NM_017681 ENSG00000198088 NUP62CL - nucleoporin 62 C-terminal like protein-coding 28743 chr8 134802380 134802484 + 0 NA Intergenic Intergenic -1825 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 7446 chr12 93785363 93785509 + 0 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) -47613 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 11863 chr16 90044186 90044406 + 0 NA 3' UTR (NM_001286209, exon 11 of 11) 3' UTR (NM_001286209, exon 11 of 11) 3329 NR_027335 100130015 Hs.431792 NR_027335 ENSG00000222019 URAHP URAH urate (hydroxyiso-) hydrolase, pseudogene pseudo 6171 chr11 118845486 118845639 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -38204 NM_001716 643 Hs.113916 NM_001716 ENSG00000160683 CXCR5 BLR1|CD185|MDR15 C-X-C motif chemokine receptor 5 protein-coding 14978 chr2 9830499 9830589 + 0 NA Intergenic Intergenic -12898 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 23717 chr5 172188412 172188432 + 0 NA promoter-TSS (NM_005990) promoter-TSS (NM_005990) -80 NM_005990 6793 Hs.744005 NM_005990 ENSG00000072786 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 18155 chr20 49188436 49188575 + 0 NA promoter-TSS (NM_001322930) promoter-TSS (NM_001322930) -135 NM_001322930 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 2858 chr1 226662857 226662961 + 0 NA intron (NR_103784, intron 1 of 1) intron (NR_103784, intron 1 of 1) 12159 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 ncRNA 28875 chr9 1513139 1513243 + 0 NA Intergenic Intergenic 462571 NM_181872 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 27785 chr8 48501628 48501732 + 0 NA Intergenic Intergenic -49887 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 27098 chr7 139341717 139341821 + 0 NA intron (NM_197964, intron 1 of 1) intron (NM_197964, intron 1 of 1) 637 NM_001244584 100996928 Hs.731488 NM_001244584 ENSG00000269955 C7orf55-LUC7L2 - C7orf55-LUC7L2 readthrough protein-coding 15228 chr2 27217287 27217391 + 0 NA promoter-TSS (NM_001306079) promoter-TSS (NM_001306079) -51 NM_001306079 790 Hs.377010 NM_004341 ENSG00000084774 CAD CDG1Z carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase protein-coding 16321 chr2 130808982 130809152 + 0 NA Intergenic L2a|LINE|L2 52776 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 30158 chr9 127785949 127786082 + 0 NA promoter-TSS (NM_001261) promoter-TSS (NM_001261) -11 NM_001261 1025 Hs.150423 NM_001261 ENSG00000136807 CDK9 C-2k|CDC2L4|CTK1|PITALRE|TAK cyclin dependent kinase 9 protein-coding 24521 chr6 39426115 39426219 + 0 NA intron (NM_145027, intron 14 of 22) intron (NM_145027, intron 14 of 22) 5207 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 8397 chr13 77537547 77537607 + 0 NA intron (NM_144777, intron 1 of 32) intron (NM_144777, intron 1 of 32) 1903 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 3 chr1 633952 634106 + 0 NA Intergenic Intergenic -1616 NR_106781 102465432 NR_106781 ENSG00000278791 MIR6723 hsa-mir-6723 microRNA 6723 ncRNA 248 chr1 17128517 17128678 + 0 NA Intergenic LTR24B|LTR|ERV1 -9144 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 7802 chr12 122449433 122449565 + 0 NA Intergenic AluJr|SINE|Alu -26930 NM_002956 6249 Hs.524809 NM_002956 ENSG00000130779 CLIP1 CLIP|CLIP-170|CLIP170|CYLN1|RSN CAP-Gly domain containing linker protein 1 protein-coding 21911 chr4 152536140 152536220 + 0 NA promoter-TSS (NR_039658) promoter-TSS (NR_039658) -84 NR_033797 54553 Hs.142307 NR_033797 ENSG00000268471 DKFZP434I0714 - uncharacterized protein DKFZP434I0714 ncRNA 18905 chr22 38921264 38921389 + 0 NA Intergenic Intergenic -36196 NM_145699 200315 Hs.226307 NM_145699 ENSG00000128383 APOBEC3A A3A|ARP3|PHRBN|bK150C2.1 apolipoprotein B mRNA editing enzyme catalytic subunit 3A protein-coding 5608 chr11 70233744 70233828 + 0 NA Intergenic Intergenic 30623 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 30215 chr9 129049348 129049362 + 0 NA intron (NR_138425, intron 4 of 15) intron (NR_138425, intron 4 of 15) 12421 NM_032809 84895 Hs.632693 NM_032809 ENSG00000148343 MIGA2 C9orf54|FAM73B mitoguardin 2 protein-coding 802 chr1 45521716 45521961 + 0 NA promoter-TSS (NM_002574) promoter-TSS (NM_002574) 100 NM_002574 5052 Hs.180909 NM_002574 ENSG00000117450 PRDX1 MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2 peroxiredoxin 1 protein-coding 17150 chr2 221780469 221780573 + 0 NA Intergenic Intergenic -206319 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 11204 chr16 29973704 29973712 + 0 NA promoter-TSS (NM_004783) promoter-TSS (NM_004783) -159 NM_001252043 9344 Hs.291623 NM_004783 ENSG00000149930 TAOK2 MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2 TAO kinase 2 protein-coding 16826 chr2 190578876 190578996 + 0 NA Intergenic Intergenic -44194 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 3924 chr10 75234436 75234540 + 0 NA intron (NM_144589, intron 6 of 6) CpG 1524 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 9153 chr14 61524412 61524516 + 0 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 45730 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 20806 chr3 184006134 184006282 + 0 NA promoter-TSS (NR_046570) promoter-TSS (NR_046570) -130 NR_046570 100873982 Hs.570696 NR_046570 ENSG00000223882 ABCC5-AS1 - ABCC5 antisense RNA 1 ncRNA 8097 chr13 33723893 33724068 + 0 NA Intergenic Intergenic -47145 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 23748 chr5 173616722 173616876 + 0 NA promoter-TSS (NM_001159651) promoter-TSS (NM_001159651) -136 NM_138369 91272 Hs.425091 NM_138369 ENSG00000145919 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 3269 chr10 8962373 8962477 + 0 NA Intergenic Intergenic 64436 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LOC105755953 - uncharacterized LOC105755953 ncRNA 2632 chr1 212432805 212433002 + 0 NA promoter-TSS (NM_013349) promoter-TSS (NM_013349) 16 NM_013349 29937 Hs.461787 NM_013349 ENSG00000117691 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 29271 chr9 75615387 75615491 + 0 NA Intergenic Intergenic -275205 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 26612 chr7 93914635 93914739 + 0 NA Intergenic Intergenic -7017 NM_004126 2791 Hs.83381 NM_004126 ENSG00000127920 GNG11 GNGT11 G protein subunit gamma 11 protein-coding 22924 chr5 96662065 96662154 + 0 NA promoter-TSS (NM_001190442) promoter-TSS (NM_001190442) -48 NM_001330627 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 27652 chr8 30727851 30727979 + 0 NA promoter-TSS (NM_001195103) promoter-TSS (NM_001195103) 54 NM_001195104 2936 Hs.271510 NM_000637 ENSG00000104687 GSR HEL-75|HEL-S-122m glutathione-disulfide reductase protein-coding 10416 chr15 72320296 72320400 + 0 NA promoter-TSS (NM_001172684) promoter-TSS (NM_001172684) -164 NM_052840 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP, Elav-like family member 6 protein-coding 9998 chr15 43792097 43792263 + 0 NA promoter-TSS (NM_001199878) promoter-TSS (NM_001199878) -197 NM_001199878 10169 Hs.424126 NM_005770 ENSG00000140264 SERF2 4F5REL|FAM2C|H4F5REL|HsT17089 small EDRK-rich factor 2 protein-coding 28600 chr8 125556430 125556556 + 0 NA Intergenic Intergenic 124284 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 6361 chr11 130314841 130315055 + 0 NA promoter-TSS (NM_001301098) promoter-TSS (NM_001301098) -236 NM_001301098 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 16191 chr2 118078946 118079032 + 0 NA Intergenic Intergenic -9429 NM_001321330 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 20409 chr3 151431994 151432187 + 0 NA intron (NM_053002, intron 42 of 42) intron (NM_053002, intron 42 of 42) 8700 NM_001178145 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 898 chr1 54200162 54200266 + 0 NA promoter-TSS (NM_001031672) promoter-TSS (NM_001031672) 47 NM_016491 51253 Hs.584908 NM_016491 ENSG00000116221 MRPL37 L2mt|L37mt|MRP-L2|MRP-L37|MRPL2|RPML2 mitochondrial ribosomal protein L37 protein-coding 798 chr1 45337981 45338085 + 0 NA intron (NM_012222, intron 1 of 15) L2a|LINE|L2 -1637 NM_025077 114034 Hs.525091 NM_025077 ENSG00000132773 TOE1 hCaf1z target of EGR1, member 1 (nuclear) protein-coding 14756 chr19 52786767 52786871 + 0 NA promoter-TSS (NM_001321866) promoter-TSS (NM_001321866) -28 NM_001321866 162966 Hs.696848 NM_198457 ENSG00000189190 ZNF600 KR-ZNF1 zinc finger protein 600 protein-coding 1273 chr1 89525024 89525124 + 0 NA intron (NM_001134476, intron 1 of 7) CpG 236 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 family member B protein-coding 20239 chr3 138187248 138187382 + 0 NA promoter-TSS (NM_014154) promoter-TSS (NM_014154) 67 NM_001267042 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 15753 chr2 69914608 69914712 + 0 NA promoter-TSS (NM_002357) promoter-TSS (NM_002357) -381 NM_001202514 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 451 chr1 27343002 27343109 + 0 NA intron (NM_032872, intron 1 of 14) intron (NM_032872, intron 1 of 14) 1063 NM_032872 84958 Hs.469175 NM_032872 ENSG00000142765 SYTL1 JFC1|SLP1 synaptotagmin like 1 protein-coding 14761 chr19 53365677 53365781 + 0 NA promoter-TSS (NR_003699) promoter-TSS (NR_003699) 14 NR_003699 170958 Hs.352638 NR_003699 ENSG00000203326 ZNF525 - zinc finger protein 525 pseudo 6227 chr11 121595821 121595954 + 0 NA intron (NM_003105, intron 32 of 47) intron (NM_003105, intron 32 of 47) 143684 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 7632 chr12 109713574 109713714 + 0 NA promoter-TSS (NM_032829) promoter-TSS (NM_032829) -738 NM_032829 84915 Hs.661785 NM_032829 ENSG00000139438 FAM222A C12orf34 family with sequence similarity 222 member A protein-coding 25724 chr7 15123993 15124123 + 0 NA Intergenic Intergenic -282608 NM_004080 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 17100 chr2 218292424 218292528 + 0 NA non-coding (NR_135643, exon 1 of 11) non-coding (NR_135643, exon 1 of 11) 101 NM_001321436 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 23779 chr5 176647175 176647325 + 0 NA promoter-TSS (NM_130465) promoter-TSS (NM_130465) -137 NM_130465 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 27413 chr8 12754433 12754483 + 0 NA intron (NR_138256, intron 1 of 10) CpG 984 NM_001329976 91694 Hs.180178 NM_152271 ENSG00000154359 LONRF1 RNF191 LON peptidase N-terminal domain and ring finger 1 protein-coding 4557 chr10 124389221 124389325 + 0 NA Intergenic CpG 29703 NM_001322968 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 3595 chr10 40131359 40131513 + 0 NA Intergenic ALR/Alpha|Satellite|centr 1434840 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 12605 chr17 47810428 47810529 + 0 NA intron (NM_145798, intron 18 of 22) intron (NM_145798, intron 18 of 22) 11303 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 25319 chr6 149863339 149863443 + 0 NA promoter-TSS (NR_045126) promoter-TSS (NR_045126) -107 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 29290 chr9 76375222 76375381 + 0 NA Intergenic Intergenic 19227 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 16520 chr2 158893221 158893325 + 0 NA Intergenic Intergenic -75361 NM_001145909 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 13789 chr18 75209346 75209436 + 0 NA promoter-TSS (NM_175907) promoter-TSS (NM_175907) -43 NM_175907 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 28665 chr8 129682094 129682198 + 0 NA Intergenic Intergenic -1907 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 26022 chr7 33905082 33905108 + 0 NA 5' UTR (NM_133468, exon 1 of 16) 5' UTR (NM_133468, exon 1 of 16) 184 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 10790 chr15 98648428 98648532 + 0 NA promoter-TSS (NM_000875) promoter-TSS (NM_000875) -59 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 11638 chr16 75096847 75096951 + 0 NA intron (NM_032268, intron 2 of 4) intron (NM_032268, intron 2 of 4) 19873 NM_153486 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLD lactate dehydrogenase D protein-coding 8743 chr14 23953681 23953820 + 0 NA promoter-TSS (NM_001282987) promoter-TSS (NM_001282987) 15 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 10168 chr15 57561173 57561277 + 0 NA Intergenic Intergenic -30679 NR_104368 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 29507 chr9 90301381 90301491 + 0 NA non-coding (NR_109795, exon 3 of 3) non-coding (NR_109795, exon 3 of 3) 132053 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 23707 chr5 171387580 171387667 + 0 NA promoter-TSS (NR_037474) promoter-TSS (NR_037474) -81 NM_002520 4869 Hs.557550 NM_002520 ENSG00000181163 NPM1 B23|NPM nucleophosmin protein-coding 3331 chr10 14959529 14959678 + 0 NA intron (NM_001080836, intron 1 of 2) CpG 164 NM_001080836 644890 Hs.257249 NM_001080836 ENSG00000197889 MEIG1 SPATA39|bA2K17.3 meiosis/spermiogenesis associated 1 protein-coding 30550 chrX 20965814 20965918 + 0 NA Intergenic Intergenic -408432 NM_001168649 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN connector enhancer of kinase suppressor of Ras 2 protein-coding 5335 chr11 61161353 61161492 + 0 NA promoter-TSS (NM_017966) promoter-TSS (NM_017966) 22 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C, ESCRT-I subunit protein-coding 9906 chr15 39405021 39405125 + 0 NA Intergenic Intergenic 154404 NM_001302797 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 540 chr1 32072871 32073003 + 0 NA promoter-TSS (NM_001319679) promoter-TSS (NM_001319679) 38 NM_001319679 55116 Hs.25544 NM_018056 ENSG00000121775 TMEM39B - transmembrane protein 39B protein-coding 1615 chr1 120850830 120850959 + 0 NA promoter-TSS (NR_104086) promoter-TSS (NR_104086) 91 NR_104086 101954277 NR_104086 ENSG00000275538 RNVU1-19 RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19 RNA, variant U1 small nuclear 19 snRNA 6673 chr12 14929112 14929282 + 0 NA promoter-TSS (NM_001300784) promoter-TSS (NM_001300784) -72 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 13423 chr18 34689874 34689978 + 0 NA intron (NM_001128175, intron 2 of 11) L1PA7|LINE|L1 -20306 NM_032978 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 2073 chr1 172933936 172934107 + 0 NA Intergenic Intergenic 116942 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL tumor necrosis factor superfamily member 18 protein-coding 7959 chr13 21688243 21688299 + 0 NA intron (NM_002010, intron 2 of 2) intron (NM_002010, intron 2 of 2) 17195 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 26474 chr7 77983087 77983185 + 0 NA Intergenic Intergenic 143006 NM_001127357 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 26198 chr7 46206575 46206765 + 0 NA Intergenic Intergenic -285398 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 23334 chr5 139985864 139985968 + 0 NA intron (NM_013983, intron 1 of 10) MIR3|SINE|MIR 57383 NM_004883 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 17587 chr20 10598484 10598623 + 0 NA intron (NM_001009608, intron 4 of 7) AluSx1|SINE|Alu 51142 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 27621 chr8 28622386 28622519 + 0 NA Intergenic CpG 79012 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 20025 chr3 122310474 122310622 + 0 NA Intergenic Intergenic -14616 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 26674 chr7 99224546 99224695 + 0 NA Intergenic MIRc|SINE|MIR -17131 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 27250 chr7 153457863 153457967 + 0 NA Intergenic Intergenic -45681 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 10285 chr15 64841661 64841702 + 0 NA promoter-TSS (NM_001195059) promoter-TSS (NM_001195059) -202 NM_001195059 80301 Hs.709337 NM_025201 ENSG00000241839 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing O2 protein-coding 11223 chr16 30526833 30526946 + 0 NA promoter-TSS (NM_024671) promoter-TSS (NM_024671) -300 NM_024671 79724 Hs.85658 NM_024671 ENSG00000169957 ZNF768 - zinc finger protein 768 protein-coding 31205 chrX 155820333 155820437 + 0 NA Intergenic L1MA3|LINE|L1 52650 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 13601 chr18 54149502 54149606 + 0 NA Intergenic Intergenic 72858 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 21647 chr4 103099858 103099969 + 0 NA promoter-TSS (NM_020139) promoter-TSS (NM_020139) -46 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 25626 chr7 6385548 6385565 + 0 NA intron (NM_006908, intron 1 of 5) intron (NM_006908, intron 1 of 5) 11061 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|Rac-1|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding 8752 chr14 24147296 24147428 + 0 NA promoter-TSS (NM_002818) promoter-TSS (NM_002818) -88 NM_017999 55072 Hs.375217 NM_017999 ENSG00000092098 RNF31 HOIP|ZIBRA ring finger protein 31 protein-coding 16639 chr2 170748105 170748209 + 0 NA intron (NR_110185, intron 1 of 5) L2|LINE|L2 -22525 NM_001290031 285141 Hs.443729 NM_001289947 ENSG00000204334 ERICH2 - glutamate rich 2 protein-coding 9957 chr15 41332613 41332764 + 0 NA promoter-TSS (NM_001317860) promoter-TSS (NM_001317860) -6 NM_001243143 51203 Hs.615092 NM_016359 ENSG00000137804 NUSAP1 ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL nucleolar and spindle associated protein 1 protein-coding 2592 chr1 210373980 210374056 + 0 NA intron (NM_001122834, intron 3 of 11) intron (NM_001122834, intron 3 of 11) 44722 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 7646 chr12 110345339 110345471 + 0 NA intron (NM_170665, intron 18 of 19) intron (NM_170665, intron 18 of 19) 58325 NM_001137664 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 11213 chr16 30355318 30355384 + 0 NA promoter-TSS (NM_001243646) promoter-TSS (NM_001243646) 10 NM_006110 10421 Hs.202677 NM_006110 ENSG00000169217 CD2BP2 FWP010|LIN1|PPP1R59|Snu40|U5-52K CD2 cytoplasmic tail binding protein 2 protein-coding 9131 chr14 60687039 60687166 + 0 NA Intergenic Intergenic 37032 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 25811 chr7 20784935 20785039 + 0 NA exon (NM_198956, exon 3 of 3) exon (NM_198956, exon 3 of 3) 1902 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 15485 chr2 46500257 46500408 + 0 NA Intergenic Intergenic 20767 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000187600 TMEM247 - transmembrane protein 247 protein-coding 2290 chr1 196002394 196002498 + 0 NA Intergenic MER11D|LTR|ERVK 580035 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 9276 chr14 68695500 68695680 + 0 NA Intergenic Intergenic -66803 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 26880 chr7 116653297 116653440 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -18991 NM_001324402 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 1123 chr1 73593502 73593606 + 0 NA Intergenic Intergenic 287384 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 10601 chr15 84716407 84716539 + 0 NA promoter-TSS (NM_001271922) promoter-TSS (NM_001271922) -13 NM_001271919 23478 Hs.9534 NM_014300 ENSG00000140612 SEC11A 1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895 SEC11 homolog A, signal peptidase complex subunit protein-coding 24289 chr6 28922132 28922210 + 0 NA intron (NM_006510, intron 1 of 7).3 intron (NM_006510, intron 1 of 7).3 1820 NM_006510 5987 Hs.440382 NM_006510 ENSG00000204713 TRIM27 RFP|RNF76 tripartite motif containing 27 protein-coding 26779 chr7 105876553 105876625 + 0 NA promoter-TSS (NM_020725) promoter-TSS (NM_020725) -4 NM_152749 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 26412 chr7 74079355 74079459 + 0 NA Intergenic Intergenic -4370 NM_002314 3984 Hs.647035 NM_002314 ENSG00000106683 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 5902 chr11 95231315 95231418 + 0 NA promoter-TSS (NM_144665) promoter-TSS (NM_144665) -284 NM_144665 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 6351 chr11 129861842 129861985 + 0 NA Intergenic Intergenic 31096 NM_006165 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 26081 chr7 38354405 38354514 + 0 NA intron (NR_040085, intron 3 of 3) intron (NR_040085, intron 3 of 3) 12882 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 4761 chr11 7548899 7548971 + 0 NA intron (NM_003621, intron 1 of 23) intron (NM_003621, intron 1 of 23) 35170 NM_003621 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 26866 chr7 116259958 116260108 + 0 NA Intergenic Intergenic 26631 NR_130921 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 26371 chr7 70178956 70179071 + 0 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 580094 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 15455 chr2 44087316 44087426 + 0 NA Intergenic CpG -81432 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 28550 chr8 122552730 122552928 + 0 NA intron (NR_131202, intron 2 of 3) MLT1H2|LTR|ERVL-MaLR 15815 NR_131202 105375734 Hs.628341 NR_131202 LOC105375734 - uncharacterized LOC105375734 ncRNA 20431 chr3 152970033 152970161 + 0 NA Intergenic L2a|LINE|L2 135404 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1 purinergic receptor P2Y1 protein-coding 29260 chr9 75071839 75071953 + 0 NA intron (NM_001330679, intron 5 of 9) L1MDa|LINE|L1 16321 NM_001127603 54981 Hs.494186 NM_017881 ENSG00000106733 NMRK1 C9orf95|NRK1|bA235O14.2 nicotinamide riboside kinase 1 protein-coding 5630 chr11 72549564 72549663 + 0 NA Intergenic MER81|DNA|hAT-Blackjack -21043 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 17027 chr2 210002487 210002559 + 0 NA promoter-TSS (NM_006916) promoter-TSS (NM_006916) -42 NM_001318927 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 2889 chr1 228131110 228131154 + 0 NA Intergenic ERV24_Prim-int|LTR|ERV1 -8952 NM_001242839 2987 Hs.376933 NM_000858 ENSG00000143774 GUK1 GMK guanylate kinase 1 protein-coding 594 chr1 34590310 34590414 + 0 NA Intergenic Intergenic 79332 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 2924 chr1 230122461 230122483 + 0 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 55277 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 10789 chr15 98562437 98562541 + 0 NA Intergenic Intergenic -48107 NM_182562 283777 Hs.668070 NM_182562 ENSG00000185087 FAM169B - family with sequence similarity 169 member B protein-coding 27499 chr8 22117887 22117991 + 0 NA intron (NM_005144, intron 16 of 18) intron (NM_005144, intron 16 of 18) -8520 NM_024815 79873 Hs.527101 NM_024815 ENSG00000275074 NUDT18 MTH3 nudix hydrolase 18 protein-coding 21856 chr4 143616856 143616960 + 0 NA intron (NM_001168235, intron 5 of 7) intron (NM_001168235, intron 5 of 7) 57436 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 glucuronidase, beta pseudogene 5 pseudo 6746 chr12 25250968 25251054 + 0 NA promoter-TSS (NM_004985) promoter-TSS (NM_004985) -80 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 14173 chr19 13906098 13906223 + 0 NA promoter-TSS (NM_017721) promoter-TSS (NM_017721) 5 NM_024323 79173 Hs.143288 NM_024323 ENSG00000132016 C19orf57 - chromosome 19 open reading frame 57 protein-coding 21293 chr4 38188832 38188872 + 0 NA Intergenic FordPrefect|DNA|hAT-Tip100 68898 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 20592 chr3 168249934 168250080 + 0 NA non-coding (NR_021485, exon 1 of 16) non-coding (NR_021485, exon 1 of 16) 485 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 4302 chr10 104291509 104291684 + 0 NA intron (NM_001191014, intron 3 of 4) intron (NM_001191014, intron 3 of 4) 16467 NM_001191015 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 21888 chr4 147822310 147822414 + 0 NA intron (NM_024605, intron 1 of 22) intron (NM_024605, intron 1 of 22) 39767 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 11473 chr16 66408890 66408895 + 0 NA intron (NR_046242, intron 1 of 1) MER81|DNA|hAT-Blackjack 368 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 26460 chr7 77122318 77122470 + 0 NA promoter-TSS (NM_020879) promoter-TSS (NM_020879) -223 NM_020879 57639 Hs.113940 NM_020879 ENSG00000135205 CCDC146 - coiled-coil domain containing 146 protein-coding 9982 chr15 43123035 43123139 + 0 NA Intergenic Intergenic -10028 NM_001347024 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 27258 chr7 155166850 155166971 + 0 NA Intergenic Intergenic -95353 NR_038945 100128264 Hs.248137 NR_038945 ENSG00000220575 HTR5A-AS1 HTR5AOS HTR5A antisense RNA 1 ncRNA 16464 chr2 151063505 151063614 + 0 NA Intergenic Intergenic 198316 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 6551 chr12 7039522 7039628 + 0 NA Intergenic Intergenic -21037 NM_005768 10162 Hs.655248 NM_005768 ENSG00000111684 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 3116 chr1 244461271 244461375 + 0 NA promoter-TSS (NM_001130957) promoter-TSS (NM_001130957) -48 NM_173807 257044 Hs.459534 NM_173807 ENSG00000179397 C1orf101 - chromosome 1 open reading frame 101 protein-coding 25514 chr7 192353 192457 + 0 NA promoter-TSS (NM_020223) promoter-TSS (NM_020223) -564 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C, golgi associated secretory pathway kinase protein-coding 10571 chr15 82540515 82540607 + 0 NA promoter-TSS (NR_111943) promoter-TSS (NR_111943) -17 NM_001021 6218 Hs.433427 NM_001021 ENSG00000182774 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 43 chr1 2494348 2494452 + 0 NA intron (NM_001303012, intron 11 of 21) intron (NM_001303012, intron 11 of 21) 18085 NM_014638 9651 Hs.170156 NM_014638 ENSG00000149527 PLCH2 PLC-L4|PLC-eta2|PLCL4|PLCeta2 phospholipase C eta 2 protein-coding 2582 chr1 209884806 209884945 + 0 NA Intergenic Intergenic -53299 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 6012 chr11 107043774 107043839 + 0 NA Intergenic Intergenic -25361 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 21380 chr4 55379289 55379441 + 0 NA intron (NR_037969, intron 1 of 3) LTR3B_|LTR|ERVK 6215 NR_037969 100506462 Hs.718667 NR_037969 ENSG00000249700 SRD5A3-AS1 - SRD5A3 antisense RNA 1 ncRNA 7887 chr12 130351441 130351575 + 0 NA intron (NM_004764, intron 9 of 20) intron (NM_004764, intron 9 of 20) 13620 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 25428 chr6 159693523 159693593 + 0 NA promoter-TSS (NM_000636) promoter-TSS (NM_000636) -230 NM_000636 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2, mitochondrial protein-coding 25186 chr6 135181216 135181367 + 0 NA promoter-TSS (NM_005375) promoter-TSS (NM_005375) -24 NM_001161660 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 12135 chr17 16286074 16286195 + 0 NA intron (NM_004278, intron 2 of 6) intron (NM_004278, intron 2 of 6) 4120 NR_031698 100302124 NR_031698 ENSG00000221355 MIR1288 MIRN1288|hsa-mir-1288 microRNA 1288 ncRNA 25886 chr7 25054983 25055087 + 0 NA Intergenic Intergenic 70326 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 20953 chr3 190533685 190533689 + 0 NA intron (NM_001167929, intron 1 of 10) intron (NM_001167929, intron 1 of 10) 19636 NM_001167931 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 288 chr1 19715721 19715723 + 0 NA intron (NM_181719, intron 13 of 15) intron (NM_181719, intron 13 of 15) 50435 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 21870 chr4 145735412 145735566 + 0 NA Intergenic Intergenic 55285 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 13711 chr18 63585132 63585286 + 0 NA Intergenic AluSq2|SINE|Alu -2091 NM_001307923 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 18564 chr21 42496305 42496451 + 0 NA promoter-TSS (NR_135518) promoter-TSS (NR_135518) -24 NM_080860 89765 Hs.661069 NM_080860 ENSG00000160188 RSPH1 CT79|RSP44|RSPH10A|TSA2|TSGA2 radial spoke head 1 homolog protein-coding 4875 chr11 13837385 13837489 + 0 NA Intergenic Intergenic 87426 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LOC101928132 - uncharacterized LOC101928132 ncRNA 18525 chr21 37533274 37533440 + 0 NA Intergenic LTR41|LTR|ERVL 113058 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 5227 chr11 45917964 45918093 + 0 NA promoter-TSS (NM_057174) promoter-TSS (NM_057174) 95 NM_057174 9409 Hs.100915 NM_004813 ENSG00000121680 PEX16 PBD8A|PBD8B peroxisomal biogenesis factor 16 protein-coding 10764 chr15 95170830 95170877 + 0 NA Intergenic Intergenic 156247 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 27912 chr8 60481052 60481143 + 0 NA Intergenic Intergenic -35813 NM_002865 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 5954 chr11 101049266 101049317 + 0 NA intron (NR_073143, intron 4 of 5) Tigger3b|DNA|TcMar-Tigger 57211 NM_032021 83935 Hs.44004 NM_032021 ENSG00000170647 TMEM133 AD031 transmembrane protein 133 protein-coding 30751 chrX 54474586 54474667 + 0 NA intron (NM_004463, intron 1 of 17) intron (NM_004463, intron 1 of 17) 21540 NM_004463 2245 Hs.709201 NM_004463 ENSG00000102302 FGD1 AAS|FGDY|MRXS16|ZFYVE3 FYVE, RhoGEF and PH domain containing 1 protein-coding 11303 chr16 48384747 48384850 + 0 NA intron (NM_003031, intron 1 of 1) CpG 520 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 22283 chr5 17000416 17000520 + 0 NA Intergenic Intergenic -64192 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 4730 chr11 5291425 5291529 + 0 NA Intergenic Intergenic 10469 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 10213 chr15 59886008 59886112 + 0 NA Intergenic Intergenic -118162 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 25536 chr7 1160269 1160412 + 0 NA promoter-TSS (NR_110070) promoter-TSS (NR_110070) -34 NR_110069 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 21555 chr4 87061182 87061286 + 0 NA intron (NM_001166693, intron 4 of 20) intron (NM_001166693, intron 4 of 20) 54233 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 8515 chr13 101450490 101450622 + 0 NA Intergenic Intergenic -2037 NM_004791 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 2118 chr1 177305135 177305267 + 0 NA Intergenic Intergenic -46385 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 23630 chr5 159825911 159825930 + 0 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 45464 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 14296 chr19 19516120 19516234 + 0 NA promoter-TSS (NM_015965) promoter-TSS (NM_015965) -33 NM_015965 51079 Hs.534453 NM_015965 ENSG00000186010 NDUFA13 B16.6|CDA016|CGI-39|GRIM-19|GRIM19 NADH:ubiquinone oxidoreductase subunit A13 protein-coding 29689 chr9 99254024 99254118 + 0 NA Intergenic Intergenic 31783 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - Sec61 translocon beta subunit protein-coding 415 chr1 26336553 26336657 + 0 NA intron (NM_001039775, intron 12 of 19) CpG-706 17525 NM_001039775 55057 Hs.128738 NM_017977 ENSG00000176092 AIM1L CRYBG2 absent in melanoma 1-like protein-coding 12965 chr17 73421034 73421138 + 0 NA intron (NM_001144952, intron 15 of 44) intron (NM_001144952, intron 15 of 44) -92597 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 17759 chr20 22729362 22729466 + 0 NA Intergenic Intergenic -121897 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 12739 chr17 56914112 56914216 + 0 NA promoter-TSS (NM_005082) promoter-TSS (NM_005082) -116 NM_005082 7706 Hs.528952 NM_005082 ENSG00000121060 TRIM25 EFP|RNF147|Z147|ZNF147 tripartite motif containing 25 protein-coding 14114 chr19 11381180 11381222 + 0 NA non-coding (NR_033663, exon 5 of 8) non-coding (NR_033663, exon 5 of 8) 3141 NM_000121 2057 Hs.631624 NM_000121 ENSG00000187266 EPOR EPO-R erythropoietin receptor protein-coding 18570 chr21 42955814 42955936 + 0 NA Intergenic HERVE-int|LTR|ERV1 -4861 NR_049889 100847013 NR_049889 ENSG00000264580 MIR5692B - microRNA 5692b ncRNA 17565 chr20 8019709 8019807 + 0 NA promoter-TSS (NM_021156) promoter-TSS (NM_021156) 71 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 1292 chr1 91022246 91022386 + 0 NA promoter-TSS (NM_016620) promoter-TSS (NM_016620) -61 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 3987 chr10 80429732 80429864 + 0 NA intron (NM_001243781, intron 5 of 5) intron (NM_001243781, intron 5 of 5) 15979 NM_001243782 84293 Hs.500333 NM_032333 ENSG00000122378 FAM213A C10orf58|PAMM family with sequence similarity 213 member A protein-coding 12732 chr17 56715965 56716119 + 0 NA Intergenic Intergenic 117853 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 20321 chr3 142976688 142976792 + 0 NA intron (NR_125393, intron 2 of 4) intron (NR_125393, intron 2 of 4) 12682 NR_125393 101927832 Hs.710007 NR_125393 ENSG00000241570 PAQR9-AS1 - PAQR9 antisense RNA 1 ncRNA 1356 chr1 95117349 95117446 + 0 NA promoter-TSS (NM_152487) promoter-TSS (NM_152487) 59 NM_152487 148534 Hs.483512 NM_152487 ENSG00000152078 TMEM56 - transmembrane protein 56 protein-coding 11984 chr17 5191908 5192053 + 0 NA promoter-TSS (NR_034082) promoter-TSS (NR_034082) -97 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 17938 chr20 35771990 35772098 + 0 NA promoter-TSS (NM_016436) promoter-TSS (NM_016436) 43 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 5208 chr11 44565336 44565440 + 0 NA promoter-TSS (NM_001024844) promoter-TSS (NM_001024844) -203 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 10782 chr15 97977250 97977354 + 0 NA Intergenic Intergenic 16599 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 22129 chr4 189940707 189940729 + 0 NA promoter-TSS (NM_004477).2 promoter-TSS (NM_004477).2 -101 NM_004477 2483 Hs.203772 NM_004477 ENSG00000109536 FRG1 FRG1A|FSG1 FSHD region gene 1 protein-coding 12216 chr17 21127369 21127427 + 0 NA intron (NM_015510, intron 1 of 6) CpG 470 NM_015510 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 19481 chr3 48847284 48847407 + 0 NA promoter-TSS (NR_109996) promoter-TSS (NR_109996) 505 NM_004157 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 1153 chr1 78237662 78237851 + 0 NA intron (NR_027310, intron 1 of 5) MamTip2|DNA|hAT-Tip100 8157 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 13318 chr18 23143225 23143274 + 0 NA intron (NM_001100619, intron 1 of 9) intron (NM_001100619, intron 1 of 9) 7486 NM_001100619 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 16605 chr2 166375947 166376051 + 0 NA promoter-TSS (NM_002977) promoter-TSS (NM_002977) -12 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 5209 chr11 44574728 44574832 + 0 NA intron (NM_002231, intron 1 of 9) L1ME4a|LINE|L1 9189 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 15721 chr2 68467290 68467428 + 0 NA promoter-TSS (NM_001024680) promoter-TSS (NM_001024680) -42 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 18575 chr21 43361833 43361937 + 0 NA non-coding (NR_131902, exon 1 of 2) non-coding (NR_131902, exon 1 of 2) 464 NR_131902 101928399 Hs.517319 NR_131902 ENSG00000237989 LINC01679 TCONS_00029157 long intergenic non-protein coding RNA 1679 ncRNA 27433 chr8 15540585 15540730 + 0 NA intron (NM_178234, intron 1 of 9) CpG 570 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|N33|OST3A tumor suppressor candidate 3 protein-coding 24708 chr6 53359451 53359460 + 0 NA Intergenic CpG -10276 NM_001242828 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 23582 chr5 154755021 154755067 + 0 NA intron (NM_015315, intron 1 of 18) CpG 42142 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 17728 chr20 19935963 19936098 + 0 NA intron (NM_018993, intron 2 of 10) intron (NM_018993, intron 2 of 10) 46464 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 7843 chr12 124566661 124566726 + 0 NA intron (NM_001077261, intron 1 of 47) CpG 771 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 28720 chr8 133203002 133203188 + 0 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 12056 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 27659 chr8 32510716 32510828 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -37438 NM_001160007 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 4463 chr10 119029569 119029673 + 0 NA promoter-TSS (NM_199461) promoter-TSS (NM_199461) -95 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 29137 chr9 69180775 69180922 + 0 NA intron (NM_201629, intron 1 of 20) intron (NM_201629, intron 1 of 20) 6793 NM_004817 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 24983 chr6 107958284 107958391 + 0 NA promoter-TSS (NM_007214) promoter-TSS (NM_007214) -59 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 20377 chr3 149646248 149646352 + 0 NA intron (NM_001168278, intron 3 of 7) MER5C|DNA|hAT-Charlie 11725 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 4830 chr11 11620513 11620617 + 0 NA intron (NM_198516, intron 1 of 10) intron (NM_198516, intron 1 of 10) 1449 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 11157 chr16 24989121 24989225 + 0 NA intron (NM_018054, intron 1 of 18) intron (NM_018054, intron 1 of 18) 26205 NM_001006634 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 8123 chr13 37747294 37747442 + 0 NA intron (NM_016179, intron 2 of 10) intron (NM_016179, intron 2 of 10) 122434 NM_001135956 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 6500 chr12 6229417 6229521 + 0 NA intron (NM_001330312, intron 2 of 7) intron (NM_001330312, intron 2 of 7) 29153 NM_001769 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 23383 chr5 141879235 141879387 + 0 NA promoter-TSS (NM_032420) promoter-TSS (NM_032420) -901 NM_032420 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 784 chr1 44674481 44674591 + 0 NA promoter-TSS (NM_001300746) promoter-TSS (NM_001300746) 72 NM_024587 79639 Hs.22157 NM_024587 ENSG00000126106 TMEM53 NET4 transmembrane protein 53 protein-coding 22650 chr5 66807916 66807992 + 0 NA intron (NM_001164664, intron 3 of 28) intron (NM_001164664, intron 3 of 28) -20822 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 28750 chr8 135228736 135228840 + 0 NA Intergenic Intergenic -5343 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 17900 chr20 34390941 34391141 + 0 NA intron (NM_001257137, intron 2 of 25) AluSq2|SINE|Alu 27806 NM_001324198 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 25434 chr6 159979335 159979439 + 0 NA intron (NM_000876, intron 1 of 47) intron (NM_000876, intron 1 of 47) 10288 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 25081 chr6 122471753 122471905 + 0 NA promoter-TSS (NM_001270394) promoter-TSS (NM_001270394) 52 NM_020755 57515 Hs.146668 NM_020755 ENSG00000111897 SERINC1 TDE1L|TDE2|TMS-2|TMS2 serine incorporator 1 protein-coding 21120 chr4 2468976 2469025 + 0 NA promoter-TSS (NM_001185009) promoter-TSS (NM_001185009) -68 NM_002938 6047 Hs.66394 NM_002938 ENSG00000063978 RNF4 RES4-26|SLX5|SNURF ring finger protein 4 protein-coding 6300 chr11 126303911 126304061 + 0 NA 5' UTR (NM_014026, exon 1 of 6) 5' UTR (NM_014026, exon 1 of 6) 234 NM_014026 28960 Hs.504249 NM_014026 ENSG00000110063 DCPS ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015 decapping enzyme, scavenger protein-coding 18385 chr20 62378237 62378376 + 0 NA Intergenic Intergenic -8759 NM_001024 6227 Hs.190968 NM_001024 ENSG00000171858 RPS21 HLDF|S21 ribosomal protein S21 protein-coding 25237 chr6 141326521 141326699 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger 642796 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 25705 chr7 13742295 13742399 + 0 NA Intergenic Intergenic 244167 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 23223 chr5 132866457 132866613 + 0 NA promoter-TSS (NM_001288827) promoter-TSS (NM_001288827) 44 NM_001288826 2661 Hs.25022 NM_005260 ENSG00000164404 GDF9 - growth differentiation factor 9 protein-coding 762 chr1 43389801 43389972 + 0 NA promoter-TSS (NM_001001653) promoter-TSS (NM_001001653) 1 NM_015284 23334 Hs.643560 NM_015284 ENSG00000198198 SZT2 C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B seizure threshold 2 homolog (mouse) protein-coding 20548 chr3 160565597 160565771 + 0 NA promoter-TSS (NM_002268) promoter-TSS (NM_002268) -96 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 21145 chr4 6689071 6689175 + 0 NA Intergenic Intergenic -4716 NM_005980 6286 Hs.2962 NM_005980 ENSG00000163993 S100P MIG9 S100 calcium binding protein P protein-coding 19102 chr3 5057912 5058023 + 0 NA Intergenic Intergenic -64278 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 27401 chr8 11902366 11902470 + 0 NA Intergenic CpG -34268 NM_147782 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 20018 chr3 121919208 121919381 + 0 NA intron (NM_021082, intron 7 of 21) LTR27D|LTR|ERV1 24970 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 13845 chr19 941108 941124 + 0 NA intron (NM_005224, intron 3 of 8) CpG 15079 NM_005224 1820 Hs.501296 NM_005224 ENSG00000116017 ARID3A BRIGHT|DRIL1|DRIL3|E2FBP1 AT-rich interaction domain 3A protein-coding 16247 chr2 121718839 121718971 + 0 NA intron (NR_037857, intron 3 of 3) intron (NR_037857, intron 3 of 3) 18022 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 16269 chr2 127165541 127165645 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 40174 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 12963 chr17 73312113 73312214 + 0 NA promoter-TSS (NM_012121) promoter-TSS (NM_012121) -159 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 24686 chr6 52352550 52352699 + 0 NA Intergenic Intergenic -9504 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 4619 chr10 131094745 131094849 + 0 NA promoter-TSS (NR_120623) promoter-TSS (NR_120623) -421 NR_120623 101927489 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 13067 chr17 78187134 78187342 + 0 NA promoter-TSS (NM_003258) promoter-TSS (NM_003258) -34 NM_001346663 7083 Hs.515122 NM_003258 ENSG00000167900 TK1 TK2 thymidine kinase 1 protein-coding 5281 chr11 57761709 57761845 + 0 NA promoter-TSS (NM_001331) promoter-TSS (NM_001331) 15 NM_001085467 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 10542 chr15 80777297 80777395 + 0 NA Intergenic Intergenic -1997 NM_001293298 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronan binding protein protein-coding 6118 chr11 115222588 115222692 + 0 NA intron (NM_014333, intron 5 of 9) intron (NM_014333, intron 5 of 9) -110937 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 5708 chr11 78079829 78079915 + 0 NA 5' UTR (NM_001203260, exon 1 of 4) 5' UTR (NM_001203260, exon 1 of 4) 347 NM_001203260 100532726 Hs.407860 NM_001203260 ENSG00000259112 NDUFC2-KCTD14 - NDUFC2-KCTD14 readthrough protein-coding 28821 chr8 143840912 143841016 + 0 NA promoter-TSS (NM_178564) promoter-TSS (NM_178564) 10 NM_178564 340371 Hs.521926 NM_178564 ENSG00000185189 NRBP2 TRG16|pp9320 nuclear receptor binding protein 2 protein-coding 20677 chr3 174533417 174533521 + 0 NA Intergenic Intergenic -325852 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 9138 chr14 61103884 61103988 + 0 NA Intergenic Intergenic 122689 NR_033344 145389 Hs.200738 NM_153811 ENSG00000139974 SLC38A6 NAT-1|SNAT6 solute carrier family 38 member 6 protein-coding 19895 chr3 112752170 112752232 + 0 NA Intergenic LTR22A|LTR|ERVK -2882 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 22803 chr5 81971918 81972071 + 0 NA promoter-TSS (NM_031482) promoter-TSS (NM_031482) -31 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 19323 chr3 33360600 33360664 + 0 NA intron (NM_001171713, intron 4 of 13) intron (NM_001171713, intron 4 of 13) 79746 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 (LBP-1a) protein-coding 2205 chr1 183160070 183160220 + 0 NA Intergenic Intergenic -25894 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 6349 chr11 129853968 129854122 + 0 NA intron (NM_138788, intron 2 of 5) intron (NM_138788, intron 2 of 5) 38264 NM_001331211 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 8292 chr13 52012197 52012350 + 0 NA promoter-TSS (NM_000053) promoter-TSS (NM_000053) -114 NR_036571 440138 Hs.512963 NM_001004127 ENSG00000253710 ALG11 CDG1P|GT8 ALG11, alpha-1,2-mannosyltransferase protein-coding 12175 chr17 17958597 17958689 + 0 NA intron (NM_001288789, intron 1 of 12) intron (NM_001288789, intron 1 of 12) 13827 NM_001082968 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 19984 chr3 119241553 119241707 + 0 NA promoter-TSS (NM_003778) promoter-TSS (NM_003778) -725 NM_212543 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 23812 chr5 178787201 178787343 + 0 NA intron (NR_135095, intron 4 of 10) intron (NR_135095, intron 4 of 10) 31163 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 16271 chr2 127218003 127218153 + 0 NA Intergenic Intergenic -12311 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 205 chr1 15352572 15352676 + 0 NA intron (NM_052929, intron 18 of 30) intron (NM_052929, intron 18 of 30) -57271 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 22 chr1 1511990 1512123 + 0 NA promoter-TSS (NM_001170536) promoter-TSS (NM_001170536) -87 NM_018188 55210 Hs.23413 NM_018188 ENSG00000197785 ATAD3A HAYOS ATPase family, AAA domain containing 3A protein-coding 17109 chr2 218731721 218731825 + 0 NA intron (NM_014640, intron 2 of 19) intron (NM_014640, intron 2 of 19) 20928 NM_014640 9654 Hs.471405 NM_014640 ENSG00000135912 TTLL4 - tubulin tyrosine ligase like 4 protein-coding 15232 chr2 27370410 27370548 + 0 NA promoter-TSS (NM_001318965) promoter-TSS (NM_001318965) -17 NM_014748 9784 Hs.278569 NM_014748 ENSG00000115234 SNX17 - sorting nexin 17 protein-coding 30332 chr9 134088134 134088238 + 0 NA Intergenic L2b|LINE|L2 -20167 NM_007371 8019 Hs.522472 NM_007371 ENSG00000169925 BRD3 ORFX|RING3L bromodomain containing 3 protein-coding 30795 chrX 68879115 68879239 + 0 NA Intergenic Intergenic 50180 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 23981 chr6 7723196 7723300 + 0 NA Intergenic Intergenic -2851 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 18183 chr20 50423260 50423409 + 0 NA Intergenic Intergenic -86987 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 3296 chr10 13100032 13100137 + 0 NA promoter-TSS (NM_001282658) promoter-TSS (NM_001282658) 2 NM_001008211 10133 Hs.332706 NM_021980 ENSG00000123240 OPTN ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP optineurin protein-coding 12462 chr17 40417942 40418079 + 0 NA promoter-TSS (NM_001067) promoter-TSS (NM_001067) -60 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A topoisomerase (DNA) II alpha protein-coding 16120 chr2 110204811 110204906 + 0 NA intron (NM_207181, intron 1 of 19) CpG 204 NM_001128179 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 15703 chr2 66929763 66929848 + 0 NA intron (NR_110169, intron 1 of 4) MER5B|DNA|hAT-Charlie -7315 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 21321 chr4 43457982 43458121 + 0 NA Intergenic LTR43B|LTR|ERV1 -558810 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LVCAT1 - liver cancer-associated transcript 1 ncRNA 8013 chr13 27195388 27195467 + 0 NA Intergenic L3b|LINE|CR1 23168 NR_046548 100874071 Hs.735400 NR_046548 USP12-AS2 - USP12 antisense RNA 2 (head to head) ncRNA 25647 chr7 7176536 7176640 + 0 NA Intergenic Intergenic -6027 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 8636 chr13 112723031 112723150 + 0 NA intron (NM_032189, intron 1 of 28) intron (NM_032189, intron 1 of 28) 31641 NR_109811 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 22334 chr5 31990826 31990930 + 0 NA intron (NM_178140, intron 3 of 24) L2a|LINE|L2 -54719 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 874 chr1 52366245 52366429 + 0 NA promoter-TSS (NM_032449) promoter-TSS (NM_032449) -132 NM_001330585 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 12694 chr17 51121854 51121984 + 0 NA Intergenic Intergenic -1054 NM_003971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 23505 chr5 150021928 150022032 + 0 NA intron (NM_014983, intron 6 of 19) intron (NM_014983, intron 6 of 19) -20813 NM_030953 81789 Hs.169333 NM_030953 ENSG00000164296 TIGD6 - tigger transposable element derived 6 protein-coding 22946 chr5 98928989 98929091 + 0 NA promoter-TSS (NR_036530) promoter-TSS (NR_036530) -94 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA 19409 chr3 42179453 42179602 + 0 NA intron (NM_014965, intron 2 of 12) intron (NM_014965, intron 2 of 12) 19358 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 MILT1|OIP106 trafficking kinesin protein 1 protein-coding 18956 chr22 41448552 41448656 + 0 NA Intergenic Intergenic -1581 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 2528 chr1 207751873 207752014 + 0 NA promoter-TSS (NM_172361) promoter-TSS (NM_172361) -95 NM_002389 4179 Hs.510402 NM_002389 ENSG00000117335 CD46 AHUS2|MCP|MIC10|TLX|TRA2.10 CD46 molecule protein-coding 10983 chr16 8869115 8869219 + 0 NA promoter-TSS (NM_001278263) promoter-TSS (NM_001278263) -155 NM_001278260 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 12117 chr17 12789451 12789471 + 0 NA promoter-TSS (NM_001321164) promoter-TSS (NM_001321164) -51 NM_001321166 9912 Hs.499758 NM_014859 ENSG00000006740 ARHGAP44 NPC-A-10|RICH2 Rho GTPase activating protein 44 protein-coding 1677 chr1 150321450 150321576 + 0 NA promoter-TSS (NM_004698) promoter-TSS (NM_004698) 34 NM_004698 9129 Hs.11776 NM_004698 ENSG00000117360 PRPF3 HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90 pre-mRNA processing factor 3 protein-coding 12942 chr17 72407691 72407760 + 0 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 64914 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 28041 chr8 74251356 74251501 + 0 NA intron (NM_020647, intron 3 of 5) MamRep605|LTR?|LTR? 69933 NM_001317830 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 12511 chr17 42017406 42017565 + 0 NA promoter-TSS (NM_001144766) promoter-TSS (NM_001144766) -91 NM_001001349 28511 Hs.632252 NM_017595 ENSG00000168256 NKIRAS2 KBRAS2|kappaB-Ras2 NFKB inhibitor interacting Ras like 2 protein-coding 17359 chr2 238203617 238203771 + 0 NA promoter-TSS (NM_030768) promoter-TSS (NM_030768) -11 NM_030768 80895 Hs.92033 NM_030768 ENSG00000132323 ILKAP ILKAP2|ILKAP3|PP2C-DELTA|PPM1O ILK associated serine/threonine phosphatase protein-coding 1320 chr1 93738485 93738554 + 0 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -56681 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 8417 chr13 79736476 79736626 + 0 NA Intergenic L1PA15|LINE|L1 -67835 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 26889 chr7 116953487 116953558 + 0 NA promoter-TSS (NR_002329) promoter-TSS (NR_002329) 195 NM_021908 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 25807 chr7 20385225 20385329 + 0 NA intron (NM_002214, intron 6 of 13) intron (NM_002214, intron 6 of 13) -53515 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 7814 chr12 122946859 122947019 + 0 NA intron (NM_001243013, intron 5 of 10) intron (NM_001243013, intron 5 of 10) 19570 NM_203444 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 1026 chr1 64470173 64470259 + 0 NA promoter-TSS (NM_020925) promoter-TSS (NM_020925) -577 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 8561 chr13 106182604 106182708 + 0 NA Intergenic Intergenic -193907 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 25086 chr6 122789874 122789937 + 0 NA intron (NM_001286138, intron 1 of 6) intron (NM_001286138, intron 1 of 6) 856 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 27272 chr7 155861006 155861125 + 0 NA Intergenic Intergenic -48792 NM_000193 6469 Hs.164537 NM_000193 ENSG00000164690 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS sonic hedgehog protein-coding 17775 chr20 23143200 23143304 + 0 NA Intergenic Intergenic -10616 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 12796 chr17 60166043 60166147 + 0 NA intron (NR_137422, intron 8 of 11) intron (NR_137422, intron 8 of 11) 16159 NM_000717 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 15943 chr2 88627704 88627844 + 0 NA promoter-TSS (NR_135540) promoter-TSS (NR_135540) -55 NR_135540 101928403 Hs.434326 NR_135540 ENSG00000234028 LOC101928403 - uncharacterized LOC101928403 ncRNA 21425 chr4 69708042 69708097 + 0 NA Intergenic Intergenic 52643 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 21287 chr4 37686670 37686774 + 0 NA promoter-TSS (NM_001085399) promoter-TSS (NM_001085399) -345 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 21238 chr4 22458202 22458352 + 0 NA intron (NM_145290, intron 3 of 18) intron (NM_145290, intron 3 of 18) 57777 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 8521 chr13 102192325 102192365 + 0 NA intron (NM_001321937, intron 1 of 3) MLT1A-int|LTR|ERVL-MaLR 118341 NM_001321932 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 12110 chr17 12020727 12020892 + 0 NA promoter-TSS (NM_003010) promoter-TSS (NM_003010) -9 NM_001281435 6416 Hs.514681 NM_003010 ENSG00000065559 MAP2K4 JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1 mitogen-activated protein kinase kinase 4 protein-coding 10268 chr15 64095891 64096028 + 0 NA promoter-TSS (NM_001242933) promoter-TSS (NM_001242933) 75 NM_001242933 6642 Hs.188634 NM_003099 ENSG00000028528 SNX1 HsT17379|VPS5 sorting nexin 1 protein-coding 1469 chr1 109213832 109213984 + 0 NA promoter-TSS (NR_034072) promoter-TSS (NR_034072) 15 NM_006513 6301 Hs.531176 NM_006513 ENSG00000031698 SARS SERRS|SERS seryl-tRNA synthetase protein-coding 3544 chr10 32692253 32692327 + 0 NA intron (NM_001321115, intron 24 of 43) MER76-int|LTR|ERVL 209182 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 26173 chr7 44606778 44606922 + 0 NA intron (NM_001003941, intron 1 of 8) CpG 328 NM_002541 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 23316 chr5 139274064 139274187 + 0 NA non-coding (NR_003141, exon 1 of 4) non-coding (NR_003141, exon 1 of 4) 373 NM_199189 9782 Hs.268939 NM_018834 ENSG00000015479 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 4674 chr11 809514 809651 + 0 NA promoter-TSS (NM_001004) promoter-TSS (NM_001004) -354 NM_001004 6181 Hs.437594 NM_001004 ENSG00000177600 RPLP2 D11S2243E|LP2|P2|RPP2 ribosomal protein lateral stalk subunit P2 protein-coding 23178 chr5 130289739 130289876 + 0 NA Intergenic Intergenic 384977 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 17369 chr2 238684542 238684695 + 0 NA Intergenic Intergenic -129119 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 10248 chr15 62897075 62897221 + 0 NA Intergenic Intergenic 73191 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 25955 chr7 29564856 29564960 + 0 NA promoter-TSS (NM_001329997) promoter-TSS (NM_001329997) -625 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 1268 chr1 88992977 88993114 + 0 NA promoter-TSS (NM_001008661) promoter-TSS (NM_001008661) -85 NM_001008661 56267 Hs.481898 NM_001008661 ENSG00000137944 KYAT3 CCBL2|KAT3|KATIII kynurenine aminotransferase 3 protein-coding 12816 chr17 62478521 62478670 + 0 NA promoter-TSS (NM_001284333) promoter-TSS (NM_001284333) -173 NM_001330418 11011 Hs.445078 NM_006852 ENSG00000146872 TLK2 HsHPK|PKU-ALPHA tousled like kinase 2 protein-coding 28007 chr8 71253653 71253801 + 0 NA intron (NM_172060, intron 9 of 15) intron (NM_172060, intron 9 of 15) 102784 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 8331 chr13 66934113 66934204 + 0 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) -43231 NR_046636 100874086 Hs.577908 NR_046636 ENSG00000225263 PCDH9-AS3 - PCDH9 antisense RNA 3 ncRNA 17038 chr2 211860467 211860571 + 0 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 565841 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 30273 chr9 131395544 131395648 + 0 NA Intergenic Intergenic -34494 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 21968 chr4 163494413 163494549 + 0 NA promoter-TSS (NM_018352) promoter-TSS (NM_018352) -40 NM_018352 55319 Hs.267446 NM_018352 ENSG00000198498 TMA16 C4orf43 translation machinery associated 16 homolog protein-coding 20660 chr3 172467367 172467503 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -18979 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 10957 chr16 4624651 4624792 + 0 NA promoter-TSS (NM_001142289) promoter-TSS (NM_001142289) -103 NM_015246 23295 Hs.526494 NM_015246 ENSG00000102858 MGRN1 RNF156 mahogunin ring finger 1 protein-coding 31036 chrX 123860043 123860077 + 0 NA promoter-TSS (NM_001167) promoter-TSS (NM_001167) -107 NM_001167 331 Hs.356076 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 30969 chrX 110087641 110087745 + 0 NA intron (NM_032227, intron 3 of 6) intron (NM_032227, intron 3 of 6) 5575 NR_039774 100616491 NR_039774 ENSG00000265584 MIR3978 - microRNA 3978 ncRNA 9963 chr15 41804494 41804648 + 0 NA intron (NR_049761, intron 3 of 29) intron (NR_049761, intron 3 of 29) -23514 NM_001114632 100137047 Hs.198161 NM_001114632 ENSG00000243789 JMJD7 - jumonji domain containing 7 protein-coding 20105 chr3 128584504 128584653 + 0 NA Intergenic Intergenic -8492 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 6401 chr11 133934803 133934907 + 0 NA intron (NM_001277285, intron 7 of 19) intron (NM_001277285, intron 7 of 19) 21899 NM_001277285 22997 Hs.204121 NM_014987 ENSG00000080854 IGSF9B - immunoglobulin superfamily member 9B protein-coding 26796 chr7 107169762 107169866 + 0 NA intron (NM_012257, intron 1 of 10) CpG 799 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 28727 chr8 133328866 133328970 + 0 NA Intergenic Intergenic -31614 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 3757 chr10 62112422 62112546 + 0 NA Intergenic MER31B|LTR|ERV1 63273 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 16342 chr2 132670832 132670833 + 0 NA promoter-TSS (NM_001321235) promoter-TSS (NM_001321235) -462 NM_001321235 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 26595 chr7 92645828 92645932 + 0 NA intron (NM_001145306, intron 5 of 7) intron (NM_001145306, intron 5 of 7) -55486 NR_109929 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 26005 chr7 32957789 32957931 + 0 NA intron (NM_007270, intron 1 of 9) CpG 456 NM_001284341 11328 Hs.103934 NM_007270 ENSG00000122642 FKBP9 FKBP60|FKBP63|PPIase FK506 binding protein 9 protein-coding 1242 chr1 87226401 87226585 + 0 NA intron (NM_001290053, intron 2 of 3) intron (NM_001290053, intron 2 of 3) 13824 NM_001290053 101927844 Hs.694591 NM_001290053 LOC101927844 - uncharacterized LOC101927844 protein-coding 30688 chrX 48676371 48676492 + 0 NA Intergenic CpG -7366 NM_000377 7454 Hs.2157 NM_000377 ENSG00000015285 WAS IMD2|SCNX|THC|THC1|WASP|WASPA Wiskott-Aldrich syndrome protein-coding 17437 chr20 1118443 1118635 + 0 NA promoter-TSS (NM_001323409) promoter-TSS (NM_001323409) -54 NM_001323409 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 12287 chr17 29347864 29348014 + 0 NA Intergenic AluJr|SINE|Alu -42723 NR_039749 100616122 NR_039749 ENSG00000160551 MIR4523 - microRNA 4523 ncRNA 18970 chr22 42090851 42091004 + 0 NA promoter-TSS (NR_034118) promoter-TSS (NR_034118) -6 NR_034118 100132273 Hs.709677 NR_034118 ENSG00000237037 NDUFA6-AS1 - NDUFA6 antisense RNA 1 (head to head) ncRNA 1874 chr1 158029042 158029165 + 0 NA intron (NM_001286349, intron 1 of 12) L2b|LINE|L2 35830 NM_018240 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 28871 chr9 1050242 1050370 + 0 NA promoter-TSS (NM_006557) promoter-TSS (NM_006557) -40 NM_006557 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 29467 chr9 87713552 87713656 + 0 NA Intergenic Intergenic -12455 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 6619 chr12 12717126 12717178 + 0 NA promoter-TSS (NM_004064) promoter-TSS (NM_004064) -118 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 17748 chr20 21125945 21126066 + 0 NA promoter-TSS (NM_001163022) promoter-TSS (NM_001163022) 22 NM_001276389 55857 Hs.187635 NM_018474 ENSG00000088970 KIZ C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69 kizuna centrosomal protein protein-coding 21309 chr4 40577188 40577301 + 0 NA intron (NM_001098634, intron 1 of 6) intron (NM_001098634, intron 1 of 6) 52622 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 28900 chr9 5446589 5446693 + 0 NA Intergenic L2a|LINE|L2 -3862 NR_052005 29126 Hs.521989 NM_014143 ENSG00000120217 CD274 B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1 CD274 molecule protein-coding 30360 chr9 136483888 136483992 + 0 NA promoter-TSS (NM_014866) promoter-TSS (NM_014866) -181 NM_001276418 9919 Hs.522500 NM_014866 ENSG00000148396 SEC16A KIAA0310|SEC16L|p250 SEC16 homolog A, endoplasmic reticulum export factor protein-coding 28335 chr8 101376131 101376250 + 0 NA Intergenic Intergenic 7297 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 31011 chrX 119791597 119791737 + 0 NA promoter-TSS (NM_001000) promoter-TSS (NM_001000) -8 NM_001000 6170 Hs.300141 NM_001000 ENSG00000198918 RPL39 L39|RPL39P42|RPL39_23_1806 ribosomal protein L39 protein-coding 24112 chr6 16759975 16760079 + 0 NA intron (NM_000332, intron 1 of 8) CpG -1111 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 31018 chrX 120309605 120309707 + 0 NA intron (NM_001104545, intron 1 of 6) intron (NM_001104545, intron 1 of 6) 1880 NM_001104545 55026 Hs.437563 NM_017938 ENSG00000125355 TMEM255A FAM70A transmembrane protein 255A protein-coding 2451 chr1 204104694 204104811 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 31634 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 4092 chr10 93458904 93459003 + 0 NA intron (NM_133337, intron 1 of 52) intron (NM_133337, intron 1 of 52) 23364 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 14568 chr19 45577160 45577318 + 0 NA intron (NM_025136, intron 1 of 1) intron (NM_025136, intron 1 of 1) 7625 NM_001017989 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 OPA3, outer mitochondrial membrane lipid metabolism regulator protein-coding 24907 chr6 89352899 89352958 + 0 NA promoter-TSS (NM_016021) promoter-TSS (NM_016021) -28 NM_016021 51465 Hs.163776 NM_016021 ENSG00000198833 UBE2J1 CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p ubiquitin conjugating enzyme E2 J1 protein-coding 19546 chr3 52287997 52288101 + 0 NA TTS (NR_046719) TTS (NR_046719) 229 NM_145262 132158 Hs.415312 NM_145262 ENSG00000168237 GLYCTK HBEBP2|HBEBP4|HBeAgBP4A glycerate kinase protein-coding 3337 chr10 15168564 15168724 + 0 NA promoter-TSS (NM_004808) promoter-TSS (NM_004808) 52 NM_004808 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 5466 chr11 65183259 65183387 + 0 NA intron (NM_001198868, intron 3 of 21) intron (NM_001198868, intron 3 of 21) 1490 NM_005186 823 Hs.502842 NM_005186 ENSG00000014216 CAPN1 CANP|CANP1|CANPL1|SPG76|muCANP|muCL calpain 1 protein-coding 19229 chr3 17742804 17742918 + 0 NA promoter-TSS (NR_135536) promoter-TSS (NR_135536) -83 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 1274 chr1 89547859 89547963 + 0 NA intron (NM_001134476, intron 2 of 7) intron (NM_001134476, intron 2 of 7) -10802 NM_015350 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 family member B protein-coding 11761 chr16 84014276 84014453 + 0 NA intron (NM_001080442, intron 8 of 9) intron (NM_001080442, intron 8 of 9) 27793 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 110 chr1 8017677 8017748 + 0 NA intron (NM_018948, intron 1 of 3) intron (NM_018948, intron 1 of 3) 8621 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 23202 chr5 132259583 132259721 + 0 NA intron (NM_003687, intron 1 of 6) intron (NM_003687, intron 1 of 6) 1994 NM_003687 8572 Hs.424312 NM_003687 ENSG00000131435 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 17433 chr20 833546 833694 + 0 NA promoter-TSS (NM_001042353) promoter-TSS (NM_001042353) -77 NM_001289145 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 9253 chr14 67674222 67674308 + 0 NA intron (NM_006370, intron 1 of 5) CpG 620 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 17143 chr2 220847686 220847888 + 0 NA Intergenic Intergenic 724571 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 17734 chr20 20052498 20052602 + 0 NA promoter-TSS (NM_001278628) promoter-TSS (NM_001278628) 36 NM_015585 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 20714 chr3 177591655 177591759 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 149786 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 21991 chr4 168480353 168480451 + 0 NA 5' UTR (NM_001291510, exon 1 of 30) 5' UTR (NM_001291510, exon 1 of 30) 112 NM_001345927 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DEAD-box helicase 60-like protein-coding 2658 chr1 213987879 213987983 + 0 NA promoter-TSS (NM_002763) promoter-TSS (NM_002763) -4 NM_001270616 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 11797 chr16 85799550 85799691 + 0 NA promoter-TSS (NM_006067) promoter-TSS (NM_006067) 53 NM_001318788 1327 Hs.433419 NM_001861 ENSG00000131143 COX4I1 COX IV-1|COX4|COX4-1|COXIV|COXIV-1 cytochrome c oxidase subunit 4I1 protein-coding 8778 chr14 28653622 28653762 + 0 NA Intergenic Intergenic 111627 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 25251 chr6 142902787 142902891 + 0 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 42362 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 6309 chr11 126917884 126917988 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -22810 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 27820 chr8 52743455 52743617 + 0 NA Intergenic L1ME1|LINE|L1 -29070 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 26539 chr7 87236948 87237052 + 0 NA Intergenic Intergenic -16413 NM_001329472 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 646 chr1 37690552 37690700 + 0 NA promoter-TSS (NM_001303030) promoter-TSS (NM_001303030) -31 NM_001303030 54955 Hs.272673 NM_017850 ENSG00000116922 C1orf109 - chromosome 1 open reading frame 109 protein-coding 11057 chr16 15644306 15644457 + 0 NA intron (NM_001143979, intron 1 of 9) intron (NM_001143979, intron 1 of 9) 1087 NR_030159 619553 NR_030159 ENSG00000072864 MIR484 MIRN484|hsa-mir-484|mir-484 microRNA 484 ncRNA 20251 chr3 138863072 138863231 + 0 NA Intergenic Intergenic 80869 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 14612 chr19 47226220 47226343 + 0 NA promoter-TSS (NR_036158) promoter-TSS (NR_036158) -661 NR_036158 100422899 NR_036158 ENSG00000265134 MIR3190 mir-3190 microRNA 3190 ncRNA 5322 chr11 59787108 59787233 + 0 NA intron (NM_004177, intron 3 of 10) intron (NM_004177, intron 3 of 10) 23702 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 30757 chrX 54999856 54999999 + 0 NA promoter-TSS (NM_001271748) promoter-TSS (NM_001271748) -396 NM_014481 27301 Hs.659558 NM_014481 ENSG00000169188 APEX2 APE2|APEXL2|XTH2|ZGRF2 apurinic/apyrimidinic endodeoxyribonuclease 2 protein-coding 11603 chr16 72093705 72093809 + 0 NA promoter-TSS (NM_001324354) promoter-TSS (NM_001324354) 41 NM_014003 9785 Hs.151218 NM_014003 ENSG00000140829 DHX38 DDX38|PRP16|PRPF16 DEAH-box helicase 38 protein-coding 15872 chr2 82140309 82140391 + 0 NA Intergenic PABL_B|LTR|ERV1 -673404 NR_110161 100507201 Hs.98589 NR_110161 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 4005 chr10 84430127 84430231 + 0 NA intron (NM_001284242, intron 2 of 6) L1M4|LINE|L1 4997 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 10282 chr15 64825692 64825844 + 0 NA promoter-TSS (NM_025049) promoter-TSS (NM_025049) -100 NM_001286497 80119 Hs.112160 NM_025049 ENSG00000140451 PIF1 C15orf20|PIF PIF1 5'-to-3' DNA helicase protein-coding 15795 chr2 72825972 72826049 + 0 NA promoter-TSS (NM_001321729) promoter-TSS (NM_001321729) 32 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2 exocyst complex component 6B protein-coding 23786 chr5 177312346 177312450 + 0 NA promoter-TSS (NM_001142935) promoter-TSS (NM_001142935) -107 NM_001142935 83463 Hs.743332 NM_031300 ENSG00000213347 MXD3 BHLHC13|MAD3|MYX MAX dimerization protein 3 protein-coding 19714 chr3 97764457 97764593 + 0 NA promoter-TSS (NR_103511) promoter-TSS (NR_103511) 4 NR_103511 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 10235 chr15 62064354 62064442 + 0 NA Intergenic Intergenic -2579 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 13583 chr18 51197615 51197719 + 0 NA promoter-TSS (NM_016626) promoter-TSS (NM_016626) 14 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 30340 chr9 134502934 134503026 + 0 NA Intergenic Intergenic 96398 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 30422 chrUn_KI270438v1 11773 11925 + 0 NA NA L1P1|LINE|L1 NA NA 8342 chr13 73058834 73058949 + 0 NA promoter-TSS (NM_001730) promoter-TSS (NM_001730) 99 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 28312 chr8 100868694 100868798 + 0 NA Intergenic Intergenic 81825 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 6407 chr11 134037311 134037415 + 0 NA intron (NR_027276, intron 1 of 2) CpG 5091 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 15517 chr2 47906595 47906749 + 0 NA promoter-TSS (NM_001190274) promoter-TSS (NM_001190274) -879 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 17934 chr20 35664916 35665037 + 0 NA promoter-TSS (NM_006047) promoter-TSS (NM_006047) -20 NM_152928 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 16450 chr2 149422445 149422593 + 0 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 92004 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 6151 chr11 118241683 118241812 + 0 NA intron (NR_104405, intron 1 of 4) Plat_L3|LINE|CR1 10621 NR_104404 196264 Hs.15396 NM_198275 ENSG00000160588 MPZL3 - myelin protein zero like 3 protein-coding 26690 chr7 100049756 100049870 + 0 NA promoter-TSS (NM_145914) promoter-TSS (NM_145914) 19 NM_145914 7589 Hs.632294 NM_145914 ENSG00000166529 ZSCAN21 NY-REN-21|ZNF38|Zipro1 zinc finger and SCAN domain containing 21 protein-coding 11962 chr17 4678594 4678698 + 0 NA intron (NM_001278241, intron 6 of 18) intron (NM_001278241, intron 6 of 18) -25584 NR_103482 101559451 Hs.634966 NR_103482 ENSG00000244184 LOC101559451 - uncharacterized LOC101559451 ncRNA 17812 chr20 25196591 25196616 + 0 NA intron (NM_001322398, intron 1 of 13) intron (NM_001322398, intron 1 of 13) 289 NR_109994 101926889 Hs.585997 NR_109994 LOC101926889 - uncharacterized LOC101926889 ncRNA 16075 chr2 105853826 105853990 + 0 NA intron (NM_001004720, intron 1 of 3) MER31B|LTR|ERV1 2160 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 27951 chr8 65491051 65491155 + 0 NA Intergenic Intergenic 71563 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 33 chr1 2050238 2050278 + 0 NA promoter-TSS (NM_002744) promoter-TSS (NM_002744) -188 NR_135509 105378591 Hs.371879 NR_135509 ENSG00000226969 LOC105378591 - uncharacterized LOC105378591 ncRNA 4166 chr10 97633485 97633628 + 0 NA promoter-TSS (NM_178832) promoter-TSS (NM_178832) 31 NM_178832 118812 Hs.217409 NM_178832 ENSG00000171160 MORN4 C10orf83|bA548K23.4|rtp MORN repeat containing 4 protein-coding 4351 chr10 110672191 110672295 + 0 NA intron (NM_001134363, intron 1 of 13) CpG 27846 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 15970 chr2 96335839 96335853 + 0 NA exon (NM_001281710, exon 1 of 18) exon (NM_001281710, exon 1 of 18) 105 NM_015341 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H non-SMC condensin I complex subunit H protein-coding 16821 chr2 190408745 190408894 + 0 NA intron (NM_017694, intron 1 of 7) CpG 464 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 25557 chr7 2523139 2523243 + 0 NA intron (NM_001040167, intron 1 of 7) intron (NM_001040167, intron 1 of 7) 3346 NM_001040168 3955 Hs.159142 NM_002304 ENSG00000106003 LFNG SCDO3 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 5654 chr11 73788056 73788196 + 0 NA intron (NM_001318500, intron 1 of 5) CpG 254 NR_134659 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 6990 chr12 50234486 50234590 + 0 NA promoter-TSS (NR_031625) promoter-TSS (NR_031625) -326 NR_031625 100302220 NR_031625 ENSG00000221604 MIR1293 MIRN1293|hsa-mir-1293|mir-1293 microRNA 1293 ncRNA 5619 chr11 71787297 71787361 + 0 NA promoter-TSS (NM_001099653) promoter-TSS (NM_001099653) -182 NM_018172 55199 Hs.567527 NM_018172 ENSG00000158483 FAM86C1 FAM86C family with sequence similarity 86 member C1 protein-coding 30326 chr9 133743089 133743230 + 0 NA Intergenic Intergenic -3204 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 4577 chr10 125823204 125823347 + 0 NA promoter-TSS (NM_078468) promoter-TSS (NM_078468) -7 NR_136675 7390 Hs.501376 NM_000375 ENSG00000188690 UROS UROIIIS uroporphyrinogen III synthase protein-coding 15334 chr2 33599446 33599554 + 0 NA promoter-TSS (NM_001304538) promoter-TSS (NM_001304538) -138 NM_015475 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 19476 chr3 48635418 48635597 + 0 NA promoter-TSS (NM_134426) promoter-TSS (NM_134426) -14 NM_022911 65010 Hs.631925 NM_022911 ENSG00000225697 SLC26A6 - solute carrier family 26 member 6 protein-coding 2013 chr1 167220118 167220222 + 0 NA promoter-TSS (NM_001198786) promoter-TSS (NM_001198786) -659 NM_001198786 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 26069 chr7 37032031 37032184 + 0 NA intron (NM_001206482, intron 15 of 21) intron (NM_001206482, intron 15 of 21) 34311 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 18024 chr20 41072475 41072579 + 0 NA intron (NM_003286, intron 3 of 20) intron (NM_003286, intron 3 of 20) 43709 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 806 chr1 45687109 45687301 + 0 NA promoter-TSS (NM_021639) promoter-TSS (NM_021639) -575 NM_021639 60313 Hs.238432 NM_021639 ENSG00000159592 GPBP1L1 SP192 GC-rich promoter binding protein 1 like 1 protein-coding 264 chr1 17520168 17520310 + 0 NA Intergenic Intergenic -19596 NR_137287 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 7675 chr12 113098576 113098680 + 0 NA TTS (NM_004416) TTS (NM_004416) 36971 NM_001301202 8437 Hs.528693 NM_004658 ENSG00000111344 RASAL1 RASAL RAS protein activator like 1 protein-coding 4960 chr11 18396039 18396143 + 0 NA promoter-TSS (NM_001165414) promoter-TSS (NM_001165414) -175 NM_001165414 3939 Hs.2795 NM_005566 ENSG00000134333 LDHA GSD11|HEL-S-133P|LDHM|PIG19 lactate dehydrogenase A protein-coding 1885 chr1 159000755 159000859 + 0 NA promoter-TSS (NM_001320010) promoter-TSS (NM_001320010) -495 NM_001320010 107181291 NM_001320010 POP3 - pyrin domain-only protein 3 protein-coding 4899 chr11 15074998 15075031 + 0 NA intron (NM_000728, intron 2 of 4) intron (NM_000728, intron 2 of 4) 1414 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 16479 chr2 152718497 152718633 + 0 NA 5' UTR (NM_152522, exon 1 of 4) intron (NR_024526, intron 1 of 3) 672 NR_024526 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 2905 chr1 228861173 228861277 + 0 NA Intergenic Intergenic 126148 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 10054 chr15 48925909 48926013 + 0 NA intron (NM_203349, intron 1 of 11) L2a|LINE|L2 37483 NM_203349 399694 Hs.642615 NM_203349 ENSG00000185634 SHC4 RaLP|SHCD SHC adaptor protein 4 protein-coding 12232 chr17 26936778 26936924 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 152390 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 20206 chr3 134597718 134597847 + 0 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 53240 NM_178554 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 5612 chr11 71241025 71241179 + 0 NA Intergenic L1M5|LINE|L1 -16306 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 30351 chr9 136109658 136109762 + 0 NA Intergenic Intergenic 8721 NM_001256526 90120 Hs.287411 NM_152833 ENSG00000238227 C9orf69 - chromosome 9 open reading frame 69 protein-coding 17694 chr20 18197877 18197917 + 0 NA Intergenic AluSx|SINE|Alu 52798 NR_028402 57325 Hs.488051 NM_020536 ENSG00000149474 KAT14 ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1 lysine acetyltransferase 14 protein-coding 6519 chr12 6470809 6470844 + 0 NA promoter-TSS (NM_014231) promoter-TSS (NM_014231) 73 NM_014231 6843 Hs.20021 NM_014231 ENSG00000139190 VAMP1 SPAX1|SYB1|VAMP-1 vesicle associated membrane protein 1 protein-coding 15986 chr2 97645899 97646037 + 0 NA promoter-TSS (NM_001862) promoter-TSS (NM_001862) -90 NM_001862 1329 Hs.1342 NM_001862 ENSG00000135940 COX5B COXVB cytochrome c oxidase subunit 5B protein-coding 21119 chr4 2418806 2418991 + 0 NA promoter-TSS (NM_001172656) promoter-TSS (NM_001172656) -47 NM_001193282 402160 Hs.443116 NM_001193282 ENSG00000206113 CFAP99 - cilia and flagella associated protein 99 protein-coding 717 chr1 41361066 41361194 + 0 NA promoter-TSS (NM_001291281) promoter-TSS (NM_001291281) -801 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 18398 chr20 63537836 63537963 + 0 NA promoter-TSS (NM_005975) promoter-TSS (NM_005975) -529 NM_001256358 5753 Hs.51133 NM_005975 ENSG00000101213 PTK6 BRK protein tyrosine kinase 6 protein-coding 16377 chr2 137253102 137253206 + 0 NA intron (NM_001316349, intron 10 of 27) intron (NM_001316349, intron 10 of 27) 487592 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 25010 chr6 110537333 110537437 + 0 NA Intergenic Intergenic -60744 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 6111 chr11 113875663 113875782 + 0 NA promoter-TSS (NM_001346263) promoter-TSS (NM_001346263) -152 NM_001346263 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 18404 chr20 63835098 63835202 + 0 NA Intergenic Intergenic -26063 NM_080622 140701 Hs.266774 NM_080622 ENSG00000183260 ABHD16B C20orf135|dJ591C20.1 abhydrolase domain containing 16B protein-coding 5436 chr11 64331905 64332058 + 0 NA Intergenic Intergenic -8237 NM_032251 283234 Hs.98564 NM_032251 ENSG00000168071 CCDC88B BRLZ|CCDC88|HKRP3|gipie coiled-coil domain containing 88B protein-coding 21232 chr4 21769581 21769685 + 0 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) -71938 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 2249 chr1 186950660 186950764 + 0 NA exon (NM_001311193, exon 11 of 16) exon (NM_001311193, exon 11 of 16) 121812 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 18135 chr20 47481952 47482010 + 0 NA Intergenic L2a|LINE|L2 -19876 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 23844 chr5 181191832 181191873 + 0 NA promoter-TSS (NR_108031) promoter-TSS (NR_108031) 56 NR_108031 102577426 Hs.277359 NR_108031 ENSG00000248473 LINC01962 - long intergenic non-protein coding RNA 1962 ncRNA 3353 chr10 17228469 17228573 + 0 NA 5' UTR (NM_003380, exon 1 of 10) 5' UTR (NM_003380, exon 1 of 10) 262 NM_003380 7431 Hs.455493 NM_003380 ENSG00000026025 VIM CTRCT30|HEL113 vimentin protein-coding 5678 chr11 75399413 75399540 + 0 NA promoter-TSS (NM_001005) promoter-TSS (NM_001005) -15 NM_001260506 6188 Hs.546286 NM_001005 ENSG00000149273 RPS3 S3 ribosomal protein S3 protein-coding 16649 chr2 171894358 171894376 + 0 NA promoter-TSS (NM_003705) promoter-TSS (NM_003705) -61 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 8957 chr14 49852968 49853084 + 0 NA 5' UTR (NM_001301732, exon 1 of 32) 5' UTR (NM_001301732, exon 1 of 32) 177 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 27836 chr8 53523852 53524052 + 0 NA Intergenic HERV3-int|LTR|ERV1 -272255 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 19189 chr3 14124834 14125015 + 0 NA promoter-TSS (NM_001098502) promoter-TSS (NM_001098502) -16 NM_024334 79188 Hs.517817 NM_024334 ENSG00000170876 TMEM43 ARVC5|ARVD5|EDMD7|LUMA transmembrane protein 43 protein-coding 2431 chr1 203480815 203480919 + 0 NA intron (NM_002725, intron 1 of 2) intron (NM_002725, intron 1 of 2) 5112 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 15593 chr2 57759976 57760190 + 0 NA Intergenic Intergenic -147568 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 23692 chr5 169971003 169971176 + 0 NA intron (NM_001346304, intron 1 of 3) CR1-16_AMi|LINE|CR1 9668 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 FAM196B C5orf57 family with sequence similarity 196 member B protein-coding 6299 chr11 126268982 126269116 + 0 NA promoter-TSS (NM_001177842) promoter-TSS (NM_001177842) 9 NR_037647 55572 Hs.317190 NM_017547 ENSG00000110074 FOXRED1 FP634|H17 FAD dependent oxidoreductase domain containing 1 protein-coding 9075 chr14 56044418 56044450 + 0 NA Intergenic Intergenic -73941 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 14879 chr19 58499515 58499619 + 0 NA exon (NM_012254, exon 7 of 10) exon (NM_012254, exon 7 of 10) 12498 NM_001321196 10998 Hs.292177 NM_012254 ENSG00000083807 SLC27A5 ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2 solute carrier family 27 member 5 protein-coding 23470 chr5 148913157 148913246 + 0 NA Intergenic Intergenic 86608 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 26319 chr7 55951806 55951933 + 0 NA promoter-TSS (NM_015969) promoter-TSS (NM_015969) -49 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 27788 chr8 48637431 48637535 + 0 NA intron (NR_105002, intron 2 of 3) L1MC3|LINE|L1 17080 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 20182 chr3 133661958 133662062 + 0 NA promoter-TSS (NM_007027) promoter-TSS (NM_007027) -117 NM_007027 11073 Hs.593379 NM_007027 ENSG00000163781 TOPBP1 TOP2BP1 topoisomerase (DNA) II binding protein 1 protein-coding 24292 chr6 28948031 28948135 + 0 NA Intergenic Intergenic 4299 NR_103538 729583 Hs.453549 NR_103538 LINC01556 C6orf100|dJ25J6.5 long intergenic non-protein coding RNA 1556 ncRNA 17923 chr20 35357799 35357903 + 0 NA intron (NM_199487, intron 6 of 8) intron (NM_199487, intron 6 of 8) 54291 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 4808 chr11 10293590 10293653 + 0 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 586 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 6127 chr11 116641605 116641709 + 0 NA intron (NR_135069, intron 1 of 2) intron (NR_135069, intron 1 of 2) 2235 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 8002 chr13 26253935 26254039 + 0 NA promoter-TSS (NM_001346501) promoter-TSS (NM_001346501) -117 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 25261 chr6 143673743 143673847 + 0 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) -4170 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 8532 chr13 102845744 102845895 + 0 NA promoter-TSS (NM_000123) promoter-TSS (NM_000123) -22 NM_000123 2073 Hs.258429 NM_000123 ENSG00000134899 ERCC5 COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC ERCC excision repair 5, endonuclease protein-coding 27086 chr7 138872717 138872821 + 0 NA intron (NM_020910, intron 12 of 19) AluJb|SINE|Alu -74573 NM_130840 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 3930 chr10 75401772 75401887 + 0 NA promoter-TSS (NR_120651) promoter-TSS (NR_120651) 65 NM_032772 84858 Hs.195710 NM_032772 ENSG00000165655 ZNF503 NOLZ-1|NOLZ1|Nlz2 zinc finger protein 503 protein-coding 7018 chr12 52147422 52147526 + 0 NA Intergenic Intergenic 44526 NM_182507 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 9049 chr14 55077773 55077908 + 0 NA Intergenic Intergenic 26196 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 8828 chr14 33986988 33987092 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -35962 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 28183 chr8 91318687 91318791 + 0 NA intron (NM_001282356, intron 6 of 19) intron (NM_001282356, intron 6 of 19) 69451 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 26418 chr7 74269883 74269987 + 0 NA Intergenic Intergenic -15477 NM_181471 5982 Hs.647062 NM_002914 ENSG00000049541 RFC2 RFC40 replication factor C subunit 2 protein-coding 19447 chr3 45842117 45842228 + 0 NA promoter-TSS (NR_075080) promoter-TSS (NR_075080) -14 NM_020347 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 16592 chr2 164920622 164920726 + 0 NA intron (NM_173512, intron 5 of 9) intron (NM_173512, intron 5 of 9) 34851 NM_001199148 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 14305 chr19 19776482 19776693 + 0 NA promoter-TSS (NR_026956) promoter-TSS (NR_026956) -174 NR_026956 284440 Hs.665307 NR_026956 LINC00663 - long intergenic non-protein coding RNA 663 ncRNA 7020 chr12 52164013 52164090 + 0 NA Intergenic Intergenic 27949 NM_182507 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 11709 chr16 81007454 81007523 + 0 NA promoter-TSS (NM_020188) promoter-TSS (NM_020188) -591 NM_020188 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 27628 chr8 29350648 29350752 + 0 NA promoter-TSS (NM_001394) promoter-TSS (NM_001394) 50 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 3864 chr10 71871476 71871588 + 0 NA Intergenic MER57F|LTR|ERV1 -20157 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 6737 chr12 24479185 24479343 + 0 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 83326 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding 16714 chr2 177264730 177264834 + 0 NA promoter-TSS (NM_001313904) promoter-TSS (NM_001313904) 349 NM_001313902 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 12490 chr17 41625719 41625875 + 0 NA TTS (NR_033415) TTS (NR_033415) -1167 NM_000422 3872 Hs.2785 NM_000422 ENSG00000128422 KRT17 39.1|CK-17|K17|PC|PC2|PCHC1 keratin 17 protein-coding 19161 chr3 11155539 11155600 + 0 NA intron (NM_001098212, intron 1 of 1) intron (NM_001098212, intron 1 of 1) 1041 NM_001098212 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 15183 chr2 24971701 24971833 + 0 NA promoter-TSS (NR_034113) promoter-TSS (NR_034113) 327 NM_016544 51277 Hs.434993 NM_016544 ENSG00000115137 DNAJC27 RBJ|RabJS DnaJ heat shock protein family (Hsp40) member C27 protein-coding 5079 chr11 30366181 30366285 + 0 NA Intergenic L2a|LINE|L2 43134 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 10302 chr15 65796745 65796832 + 0 NA Intergenic Intergenic -4495 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 3773 chr10 63432180 63432284 + 0 NA intron (NM_001322258, intron 1 of 24) LTR72B|LTR|ERV1 1657 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 5025 chr11 25982106 25982248 + 0 NA Intergenic MIR3|SINE|MIR -206946 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 19167 chr3 12155943 12156047 + 0 NA intron (NM_003256, intron 3 of 4) intron (NM_003256, intron 3 of 4) 3356 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 - TIMP metallopeptidase inhibitor 4 protein-coding 10835 chr16 138620 138783 + 0 NA promoter-TSS (NM_001243247) promoter-TSS (NM_001243247) -3 NM_001243249 8131 Hs.19699 NM_012075 ENSG00000103148 NPRL3 C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11 NPR3 like, GATOR1 complex subunit protein-coding 22968 chr5 105350451 105350555 + 0 NA Intergenic L1PBa|LINE|L1 251029 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 24211 chr6 26032119 26032222 + 0 NA promoter-TSS (NM_003537) promoter-TSS (NM_003537) -110 NM_003537 8358 Hs.533292 NM_003537 ENSG00000274267 HIST1H3B H3/l|H3FL histone cluster 1 H3 family member b protein-coding 1397 chr1 99766609 99766743 + 0 NA promoter-TSS (NM_001013660) promoter-TSS (NM_001013660) -883 NM_001013660 391059 Hs.454779 NM_001013660 ENSG00000156869 FRRS1 SDFR2|SDR2 ferric chelate reductase 1 protein-coding 11631 chr16 74774802 74774946 + 0 NA promoter-TSS (NM_024306) promoter-TSS (NM_024306) -43 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 25563 chr7 2844505 2844589 + 0 NA promoter-TSS (NM_001293092) promoter-TSS (NM_001293092) -222 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 24174 chr6 20877444 20877583 + 0 NA intron (NM_017774, intron 9 of 15) intron (NM_017774, intron 9 of 15) 343056 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 16053 chr2 102514181 102514285 + 0 NA exon (NM_001011552, exon 8 of 12) exon (NM_001011552, exon 8 of 12) 40930 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 19168 chr3 12445118 12445121 + 0 NA Intergenic Intergenic -39313 NM_001321278 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 6051 chr11 110429813 110429993 + 0 NA promoter-TSS (NM_004109) promoter-TSS (NM_004109) -34 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 8539 chr13 104385572 104385662 + 0 NA Intergenic Intergenic 960417 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 18992 chr22 43926197 43926301 + 0 NA intron (NM_025225, intron 1 of 8) intron (NM_025225, intron 1 of 8) 2510 NM_025225 80339 Hs.654800 NM_025225 ENSG00000100344 PNPLA3 ADPN|C22orf20|iPLA(2)epsilon patatin like phospholipase domain containing 3 protein-coding 10317 chr15 66774462 66774598 + 0 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 72194 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 23576 chr5 154406379 154406501 + 0 NA intron (NM_198321, intron 8 of 11) intron (NM_198321, intron 8 of 11) 39382 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 16713 chr2 177263543 177263647 + 0 NA 5' UTR (NM_001313904, exon 1 of 5) 5' UTR (NM_001313904, exon 1 of 5) 536 NM_001145413 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 5063 chr11 28657756 28657852 + 0 NA Intergenic Intergenic -180256 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 8602 chr13 110109028 110109132 + 0 NA Intergenic Intergenic 55795 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 29844 chr9 110131656 110131701 + 0 NA intron (NM_001136562, intron 1 of 3) intron (NM_001136562, intron 1 of 3) 6177 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|MISP2|PRKA2 A-kinase anchoring protein 2 protein-coding 21217 chr4 18021825 18021883 + 0 NA promoter-TSS (NM_153686) promoter-TSS (NM_153686) 21 NM_001166139 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 591 chr1 34163242 34163346 + 0 NA intron (NM_052896, intron 1 of 69) CpG 1980 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 13692 chr18 62486431 62486591 + 0 NA Intergenic Intergenic -36914 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 18854 chr22 36529275 36529426 + 0 NA promoter-TSS (NM_003753) promoter-TSS (NM_003753) -120 NM_003753 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 3846 chr10 70830338 70830490 + 0 NA intron (NM_003901, intron 2 of 14) L1MB8|LINE|L1 14466 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 6571 chr12 8681482 8681635 + 0 NA promoter-TSS (NR_123740) promoter-TSS (NR_123740) -119 NR_123740 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 19903 chr3 113035554 113035657 + 0 NA Intergenic LTR50|LTR|ERVL -15872 NM_001319111 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 28618 chr8 126572017 126572121 + 0 NA Intergenic Intergenic -13603 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 19689 chr3 86793924 86794028 + 0 NA Intergenic Intergenic 197147 NM_001320493 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 2804 chr1 224067794 224067851 + 0 NA Intergenic Intergenic -46265 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 22628 chr5 65035453 65035628 + 0 NA Intergenic CpG 266622 NM_001297644 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated protein homolog protein-coding 4078 chr10 92592942 92593092 + 0 NA promoter-TSS (NM_004523) promoter-TSS (NM_004523) -51 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 12264 chr17 28598969 28599073 + 0 NA promoter-TSS (NR_040012) promoter-TSS (NR_040012) 17 NM_006461 10615 Hs.514033 NM_006461 ENSG00000076382 SPAG5 DEEPEST|MAP126|hMAP126 sperm associated antigen 5 protein-coding 5123 chr11 34045122 34045239 + 0 NA Intergenic Intergenic -6503 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 21921 chr4 153466235 153466262 + 0 NA promoter-TSS (NM_001131007) promoter-TSS (NM_001131007) -98 NM_015196 23240 Hs.732450 NM_015196 ENSG00000121210 KIAA0922 TMEM131L KIAA0922 protein-coding 20811 chr3 184174604 184174797 + 0 NA promoter-TSS (NM_001311198) promoter-TSS (NM_001311198) -146 NM_001025205 1173 Hs.518460 NM_004068 ENSG00000161203 AP2M1 AP50|CLAPM1|mu2 adaptor related protein complex 2 mu 1 subunit protein-coding 11656 chr16 75483369 75483486 + 0 NA intron (NM_021615, intron 1 of 2) intron (NM_021615, intron 1 of 2) 11601 NM_021615 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 MCDC1 carbohydrate sulfotransferase 6 protein-coding 26784 chr7 106112404 106112559 + 0 NA promoter-TSS (NM_182715) promoter-TSS (NM_182715) -136 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 17875 chr20 33423402 33423480 + 0 NA intron (NM_003098, intron 2 of 7) intron (NM_003098, intron 2 of 7) 20451 NM_003098 6640 Hs.31121 NM_003098 ENSG00000101400 SNTA1 LQT12|SNT1|TACIP1|dJ1187J4.5 syntrophin alpha 1 protein-coding 16700 chr2 176104358 176104462 + 0 NA Intergenic Intergenic -2946 NM_021192 3237 Hs.421136 NM_021192 ENSG00000128713 HOXD11 HOX4|HOX4F homeobox D11 protein-coding 5157 chr11 35337398 35337436 + 0 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 82141 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 17429 chr20 653515 653597 + 0 NA promoter-TSS (NM_080725) promoter-TSS (NM_080725) -186 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 4942 chr11 17209246 17209451 + 0 NA Intergenic Intergenic -1352 NM_002645 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 23888 chr6 2841785 2841888 + 0 NA non-coding (NR_073112, exon 1 of 7) non-coding (NR_073112, exon 1 of 7) 213 NR_073111 1992 Hs.381167 NM_030666 ENSG00000021355 SERPINB1 EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin family B member 1 protein-coding 22852 chr5 88883116 88883238 + 0 NA promoter-TSS (NR_109941) promoter-TSS (NR_109941) -153 NR_136218 101929423 Hs.130138 NR_104031 ENSG00000248309 MEF2C-AS1 - MEF2C antisense RNA 1 ncRNA 16546 chr2 160391051 160391155 + 0 NA intron (NM_016836, intron 1 of 13) MLT1C|LTR|ERVL-MaLR 16779 NR_039946 100616364 NR_039946 ENSG00000153250 MIR4785 mir-4785 microRNA 4785 ncRNA 14719 chr19 50384080 50384191 + 0 NA promoter-TSS (NM_001256849) promoter-TSS (NM_001256849) -188 NM_002691 5424 Hs.279413 NM_002691 ENSG00000062822 POLD1 CDC2|CRCS10|MDPL|POLD DNA polymerase delta 1, catalytic subunit protein-coding 27756 chr8 42843333 42843458 + 0 NA promoter-TSS (NM_018105) promoter-TSS (NM_018105) -64 NM_199003 55145 Hs.7432 NM_018105 ENSG00000131931 THAP1 DYT6 THAP domain containing 1 protein-coding 12499 chr17 41739723 41739827 + 0 NA Intergenic L2c|LINE|L2 -5129 NM_001079870 9001 Hs.158300 NM_003949 ENSG00000173805 HAP1 HAP2|HIP5|HLP|hHLP1 huntingtin associated protein 1 protein-coding 23297 chr5 138036050 138036154 + 0 NA intron (NR_037900, intron 1 of 1) intron (NR_037900, intron 1 of 1) -2989 NM_001101801 51306 Hs.567453 NM_016603 ENSG00000031003 FAM13B ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 family with sequence similarity 13 member B protein-coding 17411 chr2 241735406 241735510 + 0 NA exon (NM_152783, exon 2 of 10) exon (NM_152783, exon 2 of 10) 879 NM_152783 728294 Hs.516813 NM_152783 ENSG00000180902 D2HGDH D2HGD D-2-hydroxyglutarate dehydrogenase protein-coding 16794 chr2 187544835 187544939 + 0 NA intron (NM_001329239, intron 1 of 9) AluSx|SINE|Alu 9618 NM_001329240 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 1106 chr1 69568002 69568006 + 0 NA 5' UTR (NM_001330635, exon 1 of 27) 5' UTR (NM_001330635, exon 1 of 27) 819 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 3898 chr10 73772554 73772596 + 0 NA TTS (NM_004922) TTS (NM_004922) 284 NM_001284194 170384 Hs.588854 NM_173540 ENSG00000196968 FUT11 - fucosyltransferase 11 protein-coding 4070 chr10 91908708 91908717 + 0 NA exon (NM_152429, exon 2 of 2) exon (NM_152429, exon 2 of 2) 789 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 10356 chr15 69414185 69414333 + 0 NA promoter-TSS (NM_001281301) promoter-TSS (NM_001281301) 13 NM_001281301 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 29067 chr9 35096245 35096301 + 0 NA 5' UTR (NM_001201484, exon 1 of 13) 5' UTR (NM_001201484, exon 1 of 13) 276 NM_001201484 84720 Hs.522099 NM_032634 ENSG00000165282 PIGO HPMRS2 phosphatidylinositol glycan anchor biosynthesis class O protein-coding 2731 chr1 220046520 220046672 + 0 NA promoter-TSS (NM_004446) promoter-TSS (NM_004446) 62 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 10772 chr15 96026401 96026505 + 0 NA Intergenic Intergenic -299475 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 5640 chr11 73218213 73218298 + 0 NA promoter-TSS (NM_002564) promoter-TSS (NM_002564) -43 NM_176072 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 19843 chr3 109643697 109643814 + 0 NA Intergenic MIR|SINE|MIR 40927 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 18603 chr22 17158876 17159074 + 0 NA promoter-TSS (NR_024482) promoter-TSS (NR_024482) 304 NM_033070 27440 Hs.26890 NM_017829 ENSG00000069998 CECR5 - cat eye syndrome chromosome region, candidate 5 protein-coding 21049 chr3 196279493 196279597 + 0 NA intron (NM_001312673, intron 1 of 8) intron (NM_001312673, intron 1 of 8) 8207 NM_005017 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 11825 chr16 87853762 87853903 + 0 NA intron (NM_003486, intron 1 of 9) intron (NM_003486, intron 1 of 9) 15667 NM_003486 8140 Hs.513797 NM_003486 ENSG00000103257 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16 solute carrier family 7 member 5 protein-coding 12053 chr17 7745841 7745945 + 0 NA intron (NM_020877, intron 12 of 85) MIRb|SINE|MIR -8427 NR_002778 118432 Hs.658086 NR_002778 ENSG00000240480 RPL29P2 RPL29_10_1510 ribosomal protein L29 pseudogene 2 pseudo 28918 chr9 6681280 6681389 + 0 NA Intergenic CpG -35642 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 9251 chr14 67600225 67600329 + 0 NA promoter-TSS (NM_004569) promoter-TSS (NM_004569) 23 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 16260 chr2 123732737 123732841 + 0 NA Intergenic Intergenic -292498 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 25467 chr6 165574947 165574958 + 0 NA intron (NM_001130690, intron 1 of 21) intron (NM_001130690, intron 1 of 21) 87148 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 18341 chr20 59011374 59011462 + 0 NA Intergenic Intergenic -4164 NM_001336 1522 Hs.252549 NM_001336 ENSG00000101160 CTSZ CTSX cathepsin Z protein-coding 28837 chr8 144409304 144409458 + 0 NA promoter-TSS (NM_013291) promoter-TSS (NM_013291) -32 NM_013291 29894 Hs.493202 NM_013291 ENSG00000071894 CPSF1 CPSF160|HSU37012|P/cl.18 cleavage and polyadenylation specific factor 1 protein-coding 29931 chr9 114611709 114611813 + 0 NA intron (NM_001330760, intron 1 of 8) CpG 335 NM_153045 203197 Hs.522357 NM_153045 ENSG00000157693 TMEM268 C9orf91 transmembrane protein 268 protein-coding 2770 chr1 222582175 222582279 + 0 NA intron (NM_139352, intron 2 of 10) L2a|LINE|L2 -7693 NR_110613 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 7478 chr12 97149110 97149214 + 0 NA Intergenic MamGypLTR3a|LTR|Gypsy 241696 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 12528 chr17 42798736 42798787 + 0 NA promoter-TSS (NM_173478) promoter-TSS (NM_173478) -36 NM_001040431 28958 Hs.16059 NM_001040431 ENSG00000183978 COA3 CCDC56|COX25|HSPC009|MITRAC12 cytochrome c oxidase assembly factor 3 protein-coding 26725 chr7 101154391 101154528 + 0 NA promoter-TSS (NM_001283) promoter-TSS (NM_001283) 54 NM_001283 1174 Hs.489365 NM_001283 ENSG00000106367 AP1S1 AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A adaptor related protein complex 1 sigma 1 subunit protein-coding 18621 chr22 18032611 18032715 + 0 NA intron (NR_024417, intron 1 of 1) intron (NR_024417, intron 1 of 1) 3278 NR_024417 100192420 Hs.589947 NR_024417 ENSG00000235295 LINC01634 - long intergenic non-protein coding RNA 1634 ncRNA 6165 chr11 118689880 118689991 + 0 NA Intergenic Intergenic -10263 NM_007180 11181 Hs.129712 NM_007180 ENSG00000118094 TREH TRE|TREA trehalase protein-coding 7288 chr12 76348368 76348518 + 0 NA promoter-TSS (NM_024685) promoter-TSS (NM_024685) -1 NM_024685 79738 Hs.96322 NM_024685 ENSG00000179941 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 7775 chr12 121467409 121467539 + 0 NA intron (NM_032590, intron 12 of 22) CpG -23122 NR_106957 102465665 NR_106957 ENSG00000089094 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 8656 chr13 114234892 114234986 + 0 NA promoter-TSS (NM_001318518) promoter-TSS (NM_001318518) 94 NM_001330105 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 29912 chr9 113463620 113463724 + 0 NA promoter-TSS (NM_017790) promoter-TSS (NM_017790) -28 NM_017790 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 29334 chr9 78982964 78983068 + 0 NA Intergenic AluJb|SINE|Alu 162650 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 16529 chr2 159153631 159153791 + 0 NA intron (NM_033394, intron 7 of 26) intron (NM_033394, intron 7 of 26) -33124 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 25970 chr7 30407297 30407343 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 16435 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 24780 chr6 71420823 71420849 + 0 NA promoter-TSS (NR_026807) promoter-TSS (NR_026807) -91 NR_026807 79940 Hs.368337 NR_026807 LINC00472 C6orf155 long intergenic non-protein coding RNA 472 ncRNA 2156 chr1 180585651 180585755 + 0 NA Intergenic Intergenic 26729 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 29898 chr9 112751625 112751729 + 0 NA intron (NM_001012994, intron 1 of 8) intron (NM_001012994, intron 1 of 8) 823 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 17131 chr2 219685173 219685312 + 0 NA Intergenic MER61B|LTR|ERV1 57672 NR_048551 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 27691 chr8 37891991 37892068 + 0 NA intron (NM_001002814, intron 1 of 5) intron (NM_001002814, intron 1 of 5) 7468 NM_025151 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 2851 chr1 226186656 226186760 + 0 NA promoter-TSS (NM_022735) promoter-TSS (NM_022735) 14 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 13957 chr19 4694543 4694647 + 0 NA intron (NM_139159, intron 13 of 21) intron (NM_139159, intron 13 of 21) 15313 NM_001242901 100131094 Hs.678135 NM_001242901 DPP9-AS1 - DPP9 antisense RNA 1 protein-coding 11105 chr16 20901588 20901793 + 0 NA intron (NM_001302835, intron 1 of 5) L2a|LINE|L2 586 NM_001302835 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 22362 chr5 34924108 34924212 + 0 NA intron (NM_018321, intron 8 of 9) intron (NM_018321, intron 8 of 9) -5433 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 29961 chr9 115605282 115605386 + 0 NA Intergenic Intergenic 138905 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 13018 chr17 75721338 75721442 + 0 NA promoter-TSS (NM_000213) promoter-TSS (NM_000213) 62 NM_000213 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 23876 chr6 1838812 1838934 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 228427 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 26656 chr7 98086469 98086500 + 0 NA Intergenic Intergenic -20401 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 4984 chr11 19668615 19668719 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -44668 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 23183 chr5 130720480 130720633 + 0 NA Intergenic Intergenic 444792 NR_073488 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 31046 chrX 129540277 129540381 + 0 NA promoter-TSS (NM_001587) promoter-TSS (NM_001587) 54 NM_000276 4952 Hs.126357 NM_000276 ENSG00000122126 OCRL INPP5F|LOCR|NPHL2|OCRL-1|OCRL1 OCRL, inositol polyphosphate-5-phosphatase protein-coding 5562 chr11 67469318 67469463 + 0 NA promoter-TSS (NM_001078650) promoter-TSS (NM_001078650) -113 NM_025124 80194 Hs.288761 NM_025124 ENSG00000172663 TMEM134 - transmembrane protein 134 protein-coding 7410 chr12 91023468 91023572 + 0 NA Intergenic Intergenic -18494 NM_004950 1833 Hs.435680 NM_004950 ENSG00000083782 EPYC DSPG3|PGLB|Pg-Lb|SLRR3B epiphycan protein-coding 11267 chr16 31459382 31459499 + 0 NA 5' UTR (NM_001105247, exon 1 of 6) 5' UTR (NM_001105247, exon 1 of 6) 444 NM_024742 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 12563 chr17 44503432 44503600 + 0 NA promoter-TSS (NM_001002909) promoter-TSS (NM_001002909) 86 NM_001304941 23131 Hs.463129 NM_001002909 ENSG00000186566 GPATCH8 GPATC8|KIAA0553 G-patch domain containing 8 protein-coding 3777 chr10 63521174 63521278 + 0 NA promoter-TSS (NM_001001330) promoter-TSS (NM_001001330) -137 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 6273 chr11 124900600 124900704 + 0 NA Intergenic Intergenic -2717 NM_001301088 54538 Hs.524121 NM_019055 ENSG00000154133 ROBO4 ECSM4|MRB roundabout guidance receptor 4 protein-coding 9141 chr14 61188261 61188365 + 0 NA Intergenic Intergenic 93499 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 22737 chr5 74992622 74992726 + 0 NA Intergenic Intergenic 38225 NM_016591 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3 glucosaminyl (N-acetyl) transferase 4, core 2 protein-coding 3528 chr10 31760177 31760281 + 0 NA Intergenic CpG 148697 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 29603 chr9 95045132 95045248 + 0 NA intron (NM_001193329, intron 12 of 15) CpG -20160 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 3756 chr10 62084035 62084167 + 0 NA intron (NM_001244638, intron 5 of 6) intron (NM_001244638, intron 5 of 6) 34890 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 465 chr1 27773003 27773133 + 0 NA promoter-TSS (NM_177424) promoter-TSS (NM_177424) -115 NM_177424 23673 Hs.523855 NM_177424 ENSG00000117758 STX12 STX13|STX14 syntaxin 12 protein-coding 13159 chr17 82216781 82216871 + 0 NA Intergenic Intergenic -3997 NM_001316321 284001 Hs.631724 NM_152675 ENSG00000176155 CCDC57 - coiled-coil domain containing 57 protein-coding 17016 chr2 208983604 208983708 + 0 NA Intergenic Intergenic -440391 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 5280 chr11 57741263 57741435 + 0 NA promoter-TSS (NM_001321335) promoter-TSS (NM_001321335) 99 NM_170746 280636 Hs.655373 NM_170746 ENSG00000211450 SELENOH C11orf31|C17orf10|SELH selenoprotein H protein-coding 13792 chr18 76399081 76399185 + 0 NA intron (NM_014643, intron 3 of 6) intron (NM_014643, intron 3 of 6) -92519 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 25558 chr7 2555803 2555907 + 0 NA promoter-TSS (NM_152743) promoter-TSS (NM_152743) -97 NM_152743 221927 Hs.520623 NM_152743 ENSG00000106009 BRAT1 BAAT1|C7orf27|RMFSL BRCA1 associated ATM activator 1 protein-coding 23823 chr5 179732552 179732604 + 0 NA promoter-TSS (NM_014757) promoter-TSS (NM_014757) -272 NM_014757 9794 Hs.631951 NM_014757 ENSG00000161021 MAML1 Mam-1|Mam1 mastermind like transcriptional coactivator 1 protein-coding 10085 chr15 50885301 50885405 + 0 NA Intergenic Intergenic -23319 NM_007347 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 epsilon 1 subunit protein-coding 13247 chr18 7950835 7950939 + 0 NA intron (NM_001105244, intron 6 of 32) intron (NM_001105244, intron 6 of 32) 383571 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase, receptor type M protein-coding 19541 chr3 52154750 52154876 + 0 NA promoter-TSS (NM_001161580) promoter-TSS (NM_001161580) -123 NM_001161580 25886 Hs.476306 NM_015426 ENSG00000164087 POC1A PIX2|SOFT|WDR51A POC1 centriolar protein A protein-coding 17876 chr20 33443864 33443968 + 0 NA promoter-TSS (NM_003098) promoter-TSS (NM_003098) -24 NM_003098 6640 Hs.31121 NM_003098 ENSG00000101400 SNTA1 LQT12|SNT1|TACIP1|dJ1187J4.5 syntrophin alpha 1 protein-coding 30214 chr9 129036424 129036574 + 0 NA promoter-TSS (NM_032809) promoter-TSS (NM_032809) -12 NR_138425 84895 Hs.632693 NM_032809 ENSG00000148343 MIGA2 C9orf54|FAM73B mitoguardin 2 protein-coding 7440 chr12 93563941 93564045 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -5829 NM_003877 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 28906 chr9 5851569 5851609 + 0 NA Intergenic Intergenic -18508 NM_024896 79956 Hs.591078 NM_024896 ENSG00000099219 ERMP1 FXNA|KIAA1815|bA207C16.3 endoplasmic reticulum metallopeptidase 1 protein-coding 9926 chr15 40382786 40382960 + 0 NA exon (NM_001142761, exon 1 of 9) exon (NM_001142761, exon 1 of 9) 152 NM_001142761 90417 Hs.525796 NM_033286 ENSG00000128944 KNSTRN C15orf23|HSD11|SKAP|TRAF4AF1 kinetochore localized astrin/SPAG5 binding protein protein-coding 26105 chr7 40843687 40843812 + 0 NA intron (NM_024728, intron 14 of 14) L2a|LINE|L2 136190 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 30645 chrX 44542978 44543065 + 0 NA promoter-TSS (NM_173794) promoter-TSS (NM_173794) -46 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 14464 chr19 40690831 40690935 + 0 NA promoter-TSS (NM_001289979) promoter-TSS (NM_001289979) -225 NM_004756 9253 Hs.326953 NM_004756 ENSG00000105245 NUMBL CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23 NUMB like, endocytic adaptor protein protein-coding 7469 chr12 96400387 96400535 + 0 NA 5' UTR (NM_001170464, exon 1 of 16) 5' UTR (NM_001170464, exon 1 of 16) 127 NM_002595 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 8087 chr13 33207791 33207923 + 0 NA intron (NM_001243476, intron 5 of 17) LTR86A1|LTR|ERVL -1807 NM_001243474 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 29807 chr9 108562316 108562331 + 0 NA Intergenic Intergenic 293672 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 20720 chr3 177816762 177816802 + 0 NA promoter-TSS (NR_110826) promoter-TSS (NR_110826) -83 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 28768 chr8 140727402 140727546 + 0 NA intron (NM_153831, intron 22 of 31) intron (NM_153831, intron 22 of 31) 5179 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 24137 chr6 18307135 18307310 + 0 NA Intergenic Intergenic -42654 NM_001134709 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 18364 chr20 60300548 60300566 + 0 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -7917 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 19047 chr22 49960343 49960457 + 0 NA promoter-TSS (NM_001001852) promoter-TSS (NM_001001852) -95 NM_001001852 415116 Hs.530381 NM_001001852 ENSG00000198355 PIM3 pim-3 Pim-3 proto-oncogene, serine/threonine kinase protein-coding 17281 chr2 232378485 232378629 + 0 NA promoter-TSS (NM_001632) promoter-TSS (NM_001632) 23 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 2166 chr1 181105304 181105378 + 0 NA Intergenic CpG 16839 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 3091 chr1 242764137 242764224 + 0 NA Intergenic L1MA8|LINE|L1 -239484 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 17476 chr20 3159838 3159988 + 0 NA promoter-TSS (NM_001267584) promoter-TSS (NM_001267584) -3 NM_199415 22888 Hs.654646 NM_014948 ENSG00000185019 UBOX5 RNF37|UBCE7IP5|UIP5|hUIP5 U-box domain containing 5 protein-coding 25717 chr7 14507704 14507875 + 0 NA intron (NM_145695, intron 19 of 23) MER130|DNA|DNA 333661 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 21270 chr4 26860582 26860676 + 0 NA promoter-TSS (NR_134673) promoter-TSS (NR_134673) -30 NR_134673 105374546 Hs.548859 NR_134673 LOC105374546 - uncharacterized LOC105374546 ncRNA 16943 chr2 203238960 203238993 + 0 NA 5' UTR (NM_177538, exon 1 of 13) 5' UTR (NM_177538, exon 1 of 13) 535 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 29391 chr9 83885656 83885805 + 0 NA intron (NM_017576, intron 9 of 17) AluJb|SINE|Alu 35735 NM_001271927 55582 Hs.697514 NM_017576 ENSG00000165115 KIF27 - kinesin family member 27 protein-coding 23752 chr5 174327486 174327552 + 0 NA Intergenic Intergenic -8835 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 5726 chr11 80103678 80103782 + 0 NA Intergenic Intergenic 659073 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 8354 chr13 74129996 74130100 + 0 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 3881 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 3616 chr10 43397216 43397433 + 0 NA promoter-TSS (NM_001098208) promoter-TSS (NM_001098208) 22 NM_001098207 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 23249 chr5 134503488 134503592 + 0 NA Intergenic Intergenic -3012 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LINC01843 - long intergenic non-protein coding RNA 1843 ncRNA 21267 chr4 26319616 26319738 + 0 NA promoter-TSS (NM_005349) promoter-TSS (NM_005349) -33 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 6056 chr11 110971360 110971447 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR -258214 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 9938 chr15 40793732 40793774 + 0 NA intron (NM_018163, intron 1 of 10) MIR|SINE|MIR -13323 NM_001258420 84936 Hs.121676 NM_032850 ENSG00000166140 ZFYVE19 ANCHR|MPFYVE zinc finger FYVE-type containing 19 protein-coding 30695 chrX 48897801 48897899 + 0 NA promoter-TSS (NM_001032381) promoter-TSS (NM_001032381) -62 NM_001032382 10084 Hs.534384 NM_005710 ENSG00000102103 PQBP1 MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS polyglutamine binding protein 1 protein-coding 7389 chr12 89225927 89226031 + 0 NA Intergenic Intergenic 126880 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 2310 chr1 197967256 197967337 + 0 NA Intergenic Intergenic 49909 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 2495 chr1 205983993 205984081 + 0 NA intron (NM_001304839, intron 4 of 4) intron (NM_001304839, intron 4 of 4) 10402 NM_177403 338382 Hs.534612 NM_177403 ENSG00000276600 RAB7B RAB7 RAB7B, member RAS oncogene family protein-coding 22448 chr5 41904065 41904278 + 0 NA promoter-TSS (NM_175921) promoter-TSS (NM_175921) -173 NM_175921 285636 Hs.29899 NM_175921 ENSG00000205765 C5orf51 - chromosome 5 open reading frame 51 protein-coding 17298 chr2 233490956 233491060 + 0 NA intron (NM_018218, intron 25 of 30) intron (NM_018218, intron 25 of 30) 74582 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 24450 chr6 35485703 35485757 + 0 NA intron (NM_003214, intron 2 of 12) intron (NM_003214, intron 2 of 12) 11354 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding 4179 chr10 97882555 97882728 + 0 NA intron (NM_001206528, intron 13 of 14) intron (NM_001206528, intron 13 of 14) 32403 NM_001010917 401647 Hs.567524 NM_001010917 ENSG00000155265 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family member B protein-coding 14287 chr19 19138423 19138582 + 0 NA promoter-TSS (NM_001256766) promoter-TSS (NM_001256766) -1 NM_017814 54929 Hs.631629 NM_017814 ENSG00000064545 TMEM161A AROS-29 transmembrane protein 161A protein-coding 22044 chr4 176443301 176443405 + 0 NA Intergenic Intergenic 123414 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 5481 chr11 65497557 65497661 + 0 NA promoter-TSS (NR_002819) promoter-TSS (NR_002819) -129 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 15533 chr2 53051280 53051384 + 0 NA Intergenic L1MC3|LINE|L1 -348717 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 10628 chr15 86611872 86611976 + 0 NA intron (NM_152336, intron 22 of 24) L3|LINE|CR1 -294956 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 8281 chr13 50756270 50756374 + 0 NA intron (NM_198989, intron 1 of 1) L1PA16|LINE|L1 -51533 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000237152 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 20220 chr3 136586689 136586793 + 0 NA intron (NM_005862, intron 4 of 33) intron (NM_005862, intron 4 of 33) 165662 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 7267 chr12 73678460 73678564 + 0 NA Intergenic MER67A|LTR|ERV1 519322 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LOC101928137 - uncharacterized LOC101928137 ncRNA 22888 chr5 93237146 93237250 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 334145 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 2050 chr1 169529440 169529545 + 0 NA intron (NM_000130, intron 16 of 24) intron (NM_000130, intron 16 of 24) -43522 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 3815 chr10 69124175 69124279 + 0 NA promoter-TSS (NM_001318946) promoter-TSS (NM_001318946) 74 NM_001318946 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 13289 chr18 13726536 13726700 + 0 NA promoter-TSS (NM_001098801) promoter-TSS (NM_001098801) -26 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 12366 chr17 35299191 35299295 + 0 NA Intergenic LTR19-int|LTR|ERV1 56176 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 30737 chrX 53093905 53094056 + 0 NA promoter-TSS (NR_110456) promoter-TSS (NR_110456) -177 NR_110456 102723508 Hs.633244 NR_110456 KANTR LINC01155|Spasm KDM5C adjacent non-coding transcript ncRNA 18160 chr20 49562417 49562521 + 0 NA intron (NM_000961, intron 1 of 9) intron (NM_000961, intron 1 of 9) 5701 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 29859 chr9 110969958 110969978 + 0 NA intron (NM_001401, intron 2 of 3) L1ME3G|LINE|L1 68117 NM_001401 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 26411 chr7 73979200 73979347 + 0 NA Intergenic Intergenic -48516 NM_001278914 2006 Hs.647061 NM_000501 ENSG00000049540 ELN SVAS|WBS|WS elastin protein-coding 21351 chr4 49154405 49154547 + 0 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 167834 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 1787 chr1 154405289 154405439 + 0 NA 5' UTR (NM_001206866, exon 1 of 7) 5' UTR (NM_001206866, exon 1 of 7) 171 NM_181359 3570 Hs.135087 NM_000565 ENSG00000160712 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 6062 chr11 111299206 111299310 + 0 NA promoter-TSS (NM_001302646) promoter-TSS (NM_001302646) -5 NM_001302646 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 936 chr1 58572830 58572934 + 0 NA Intergenic Intergenic 4612 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 24265 chr6 27872328 27872459 + 0 NA promoter-TSS (NM_003533) promoter-TSS (NM_003533) -72 NM_003533 8354 Hs.132854 NM_003533 ENSG00000275379 HIST1H3I H3.f|H3/f|H3FF histone cluster 1 H3 family member i protein-coding 24119 chr6 17393689 17393703 + 0 NA 5' UTR (NM_006366, exon 1 of 13) 5' UTR (NM_006366, exon 1 of 13) 191 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - CAP, adenylate cyclase-associated protein, 2 (yeast) protein-coding 21202 chr4 15677808 15677956 + 0 NA Intergenic MER21C|LTR|ERVL -3847 NM_001145191 285550 Hs.399980 NM_001145191 ENSG00000237765 FAM200B - family with sequence similarity 200 member B protein-coding 18593 chr21 46228611 46228715 + 0 NA promoter-TSS (NR_110565) promoter-TSS (NR_110565) 161 NM_001145436 4047 Hs.596543 NM_002340 ENSG00000160285 LSS CTRCT44|OSC lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) protein-coding 15409 chr2 40412627 40412731 + 0 NA intron (NM_021097, intron 1 of 9) intron (NM_021097, intron 1 of 9) 17625 NM_001112801 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 30019 chr9 120730839 120730943 + 0 NA Intergenic Intergenic -16404 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 22883 chr5 92017989 92018093 + 0 NA Intergenic Intergenic -634668 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 5110 chr11 33061506 33061652 + 0 NA exon (NM_018393, exon 7 of 10) exon (NM_018393, exon 7 of 10) -14571 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 7417 chr12 91926942 91927046 + 0 NA Intergenic Intergenic 214719 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 30708 chrX 49156276 49156429 + 0 NA Intergenic CpG -6491 NM_024859 79917 Hs.193170 NM_024859 ENSG00000269313 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 4510 chr10 121326049 121326133 + 0 NA Intergenic Intergenic 205223 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 3710 chr10 58023807 58023899 + 0 NA Intergenic Intergenic 244081 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 6251 chr11 123083768 123083872 + 0 NA exon (NM_024769, exon 4 of 7) exon (NM_024769, exon 4 of 7) -21485 NM_153201 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 9365 chr14 74084558 74084689 + 0 NA promoter-TSS (NM_001278593) promoter-TSS (NM_001278593) -130 NM_001278593 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 12240 chr17 27333005 27333023 + 0 NA Intergenic CpG 38934 NM_134265 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 3630 chr10 44959565 44959709 + 0 NA promoter-TSS (NR_033842) promoter-TSS (NR_033842) 52 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 8978 chr14 50668281 50668409 + 0 NA promoter-TSS (NM_021818) promoter-TSS (NM_021818) 8 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 16230 chr2 120291500 120291604 + 0 NA intron (NM_002881, intron 4 of 4) intron (NM_002881, intron 4 of 4) 38714 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 13731 chr18 66599425 66599529 + 0 NA intron (NR_073130, intron 1 of 11) L1MA7|LINE|L1 4661 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 8696 chr14 22432643 22432802 + 0 NA Intergenic Intergenic 156515 NM_001344 1603 Hs.82890 NM_001344 ENSG00000129562 DAD1 OST2 defender against cell death 1 protein-coding 2708 chr1 218460056 218460175 + 0 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 17489 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 7176 chr12 58067713 58067871 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -20100 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LOC105369785 - uncharacterized LOC105369785 ncRNA 1650 chr1 147172459 147172628 + 0 NA promoter-TSS (NM_005399) promoter-TSS (NM_005399) 46 NR_103871 5565 Hs.50732 NM_005399 ENSG00000131791 PRKAB2 - protein kinase AMP-activated non-catalytic subunit beta 2 protein-coding 29412 chr9 84970525 84970666 + 0 NA intron (NM_001018064, intron 15 of 16) intron (NM_001018064, intron 15 of 16) 300218 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 6999 chr12 50620542 50620599 + 0 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 115585 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 10046 chr15 48331811 48331915 + 0 NA promoter-TSS (NM_001948) promoter-TSS (NM_001948) -305 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 23242 chr5 134245321 134245425 + 0 NA Intergenic LTR18B|LTR|ERVL -19114 NM_002715 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 2139 chr1 179026218 179026348 + 0 NA intron (NM_001324311, intron 1 of 7) CpG 159 NM_001324311 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B, glycosaminoglycan xylosylkinase protein-coding 25681 chr7 12257809 12257913 + 0 NA Intergenic L2|LINE|L2 46639 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B - transmembrane protein 106B protein-coding 768 chr1 43835292 43835396 + 0 NA intron (NM_174963, intron 5 of 12) intron (NM_174963, intron 5 of 12) -3278 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 7924 chr12 133080101 133080231 + 0 NA promoter-TSS (NM_001300776) promoter-TSS (NM_001300776) -37 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 28938 chr9 14693281 14693433 + 0 NA 5' UTR (NM_178566, exon 1 of 10) 5' UTR (NM_178566, exon 1 of 10) 125 NM_178566 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 9130404H11Rik|DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 19511 chr3 50227564 50227680 + 0 NA TTS (NR_106714) TTS (NR_106714) 186 NR_106714 102464817 NR_106714 ENSG00000275334 MIR5787 hsa-mir-5787 microRNA 5787 ncRNA 1636 chr1 145892081 145892235 + 0 NA 3' UTR (NM_003637, exon 30 of 30) 3' UTR (NM_003637, exon 30 of 30) -6292 NM_144698 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 19298 chr3 30502688 30502791 + 0 NA Intergenic Intergenic -103763 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 13180 chr17 82752625 82752625 + 0 NA intron (NM_005993, intron 1 of 38) CpG 561 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 25294 chr6 147203824 147204014 + 0 NA promoter-TSS (NM_139244) promoter-TSS (NM_139244) -439 NM_001127715 134957 Hs.86320 NM_139244 ENSG00000164506 STXBP5 LGL3|LLGL3|Nbla04300 syntaxin binding protein 5 protein-coding 7730 chr12 119178621 119178725 + 0 NA promoter-TSS (NM_014365) promoter-TSS (NM_014365) -117 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 11958 chr17 4413283 4413423 + 0 NA Intergenic Intergenic -20571 NM_001320449 201305 Hs.657543 NM_182538 ENSG00000182557 SPNS3 - sphingolipid transporter 3 (putative) protein-coding 12357 chr17 35085167 35085271 + 0 NA intron (NR_037713, intron 1 of 6) Tigger14a|DNA|TcMar-Tigger 4110 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 15069 chr2 15169740 15169854 + 0 NA intron (NM_015909, intron 51 of 51) intron (NM_015909, intron 51 of 51) 391551 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 20744 chr3 179673011 179673115 + 0 NA intron (NM_003940, intron 1 of 20) intron (NM_003940, intron 1 of 20) 19918 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding 4976 chr11 19374368 19374472 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 23696 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 18427 chr21 17512541 17512617 + 0 NA promoter-TSS (NM_001207064) promoter-TSS (NM_001207064) -327 NM_001338 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR coxsackie virus and adenovirus receptor protein-coding 338 chr1 22832171 22832338 + 0 NA intron (NM_001309192, intron 3 of 13) MIRb|SINE|MIR 30972 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 19522 chr3 50611948 50612077 + 0 NA promoter-TSS (NM_145071) promoter-TSS (NM_145071) 150 NM_001243926 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding 761 chr1 43367883 43367928 + 0 NA promoter-TSS (NM_001256399) promoter-TSS (NM_001256399) -167 NM_001256399 64834 Hs.25597 NM_022821 ENSG00000066322 ELOVL1 CGI-88|Ssc1 ELOVL fatty acid elongase 1 protein-coding 576 chr1 33080983 33081111 + 0 NA promoter-TSS (NM_001293562) promoter-TSS (NM_001293562) -66 NM_052998 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 5478 chr11 65487600 65487734 + 0 NA Intergenic Intergenic -10071 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 17548 chr20 6654973 6655114 + 0 NA Intergenic Intergenic -113055 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 28670 chr8 129939862 129939902 + 0 NA promoter-TSS (NM_001256763) promoter-TSS (NM_001256763) -10 NM_001256763 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 1415 chr1 101002742 101002846 + 0 NA intron (NM_015958, intron 4 of 7) intron (NM_015958, intron 4 of 7) 23012 NM_015958 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 1078 chr1 67723845 67723949 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 38720 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 2334 chr1 199759354 199759450 + 0 NA Intergenic Intergenic -268200 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 21407 chr4 61468261 61468365 + 0 NA intron (NM_015236, intron 2 of 24) MamGypsy2-I|LTR|Gypsy 267057 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 13538 chr18 48937566 48937768 + 0 NA intron (NM_001190821, intron 3 of 3) intron (NM_001190821, intron 3 of 3) 5140 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 28418 chr8 109066600 109066711 + 0 NA Intergenic L1MC1|LINE|L1 -20769 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 22303 chr5 18698601 18698733 + 0 NA Intergenic LTR13_|LTR|ERVK 891393 NR_134287 646241 Hs.407197 NR_134286 LOC646241 - uncharacterized LOC646241 ncRNA 23347 chr5 140348177 140348310 + 0 NA Intergenic Intergenic -1640 NM_001945 1839 Hs.799 NM_001945 ENSG00000113070 HBEGF DTR|DTS|DTSF|HEGFL heparin binding EGF like growth factor protein-coding 17514 chr20 5061467 5061571 + 0 NA Intergenic MER117|DNA|hAT-Charlie -51226 NM_203327 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2|hSVCT2 solute carrier family 23 member 2 protein-coding 2956 chr1 232622541 232622701 + 0 NA Intergenic Intergenic -107013 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 8056 chr13 30486559 30486694 + 0 NA intron (NM_001313893, intron 1 of 4) intron (NM_001313893, intron 1 of 4) -20661 NM_002128 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 22370 chr5 35877024 35877128 + 0 NA non-coding (NR_120485, exon 6 of 6) non-coding (NR_120485, exon 6 of 6) 20201 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 9439 chr14 77761133 77761289 + 0 NA promoter-TSS (NM_012245) promoter-TSS (NM_012245) -57 NM_001318844 22938 Hs.445498 NM_012245 ENSG00000100603 SNW1 Bx42|NCOA-62|PRPF45|Prp45|SKIIP|SKIP SNW domain containing 1 protein-coding 12186 chr17 18363483 18363610 + 0 NA promoter-TSS (NM_001281786) promoter-TSS (NM_001281786) 17 NM_004169 6470 Hs.513987 NM_004169 ENSG00000176974 SHMT1 CSHMT|SHMT serine hydroxymethyltransferase 1 protein-coding 29968 chr9 115916470 115916529 + 0 NA intron (NR_024032, intron 1 of 2) LTR16|LTR|ERVL 8599 NR_024032 58483 Hs.23367 NM_021208 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 23809 chr5 178642577 178642747 + 0 NA Intergenic MER70A|LTR|ERVL -15609 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 19384 chr3 39384225 39384378 + 0 NA intron (NM_017875, intron 1 of 6) CpG 977 NM_017875 54977 Hs.369615 NM_017875 ENSG00000144659 SLC25A38 SIDBA2 solute carrier family 25 member 38 protein-coding 8104 chr13 34359220 34359324 + 0 NA Intergenic Intergenic 281413 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 9568 chr14 92503977 92504124 + 0 NA Intergenic Intergenic -9731 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 10732 chr15 92921945 92922076 + 0 NA intron (NM_001042572, intron 2 of 12) intron (NM_001042572, intron 2 of 12) 17611 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA 6144 chr11 117946975 117947157 + 0 NA Intergenic Intergenic -17613 NM_001077263 84000 Hs.266308 NM_032046 ENSG00000137747 TMPRSS13 MSP|MSPL|MSPS|TMPRSS11 transmembrane protease, serine 13 protein-coding 628 chr1 36300140 36300246 + 0 NA intron (NM_001321473, intron 9 of 11) intron (NM_001321473, intron 9 of 11) -6200 NM_001162530 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 10241 chr15 62390486 62390525 + 0 NA Intergenic Intergenic 47476 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 7525 chr12 101018635 101018795 + 0 NA intron (NM_001286616, intron 7 of 26) intron (NM_001286616, intron 7 of 26) 117069 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 16128 chr2 111236247 111236358 + 0 NA intron (NR_136166, intron 3 of 4) intron (NR_136166, intron 3 of 4) 84784 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 4014 chr10 85548186 85548346 + 0 NA Intergenic L1ME1|LINE|L1 -29465 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 30790 chrX 68428539 68428643 + 0 NA intron (NM_002547, intron 2 of 24) L2b|LINE|L2 4866 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 17235 chr2 229376996 229377100 + 0 NA intron (NM_139072, intron 11 of 12) intron (NM_139072, intron 11 of 12) -105707 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 4803 chr11 9759793 9759957 + 0 NA promoter-TSS (NR_033972) promoter-TSS (NR_033972) -342 NR_033972 440028 Hs.677541 NR_033972 ENSG00000245522 LOC440028 - uncharacterized LOC440028 ncRNA 23060 chr5 115551526 115551640 + 0 NA Intergenic Intergenic -6689 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 24034 chr6 11139162 11139266 + 0 NA TTS (NM_001135575) TTS (NM_001135575) -27376 NM_207582 405754 Hs.631996 NM_207582 ENSG00000244476 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD member 1 protein-coding 21432 chr4 70993539 70993547 + 0 NA promoter-TSS (NM_000788) promoter-TSS (NM_000788) -5 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 733 chr1 42456409 42456571 + 0 NA promoter-TSS (NM_001146192) promoter-TSS (NM_001146192) -4 NM_001287511 79717 Hs.706662 NM_024664 ENSG00000127125 PPCS - phosphopantothenoylcysteine synthetase protein-coding 5003 chr11 20367719 20367823 + 0 NA TTS (NM_001098523) TTS (NM_001098523) 3630 NM_001098523 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 21051 chr3 196317801 196317915 + 0 NA promoter-TSS (NR_121665) promoter-TSS (NR_121665) 436 NM_152773 255758 Hs.733180 NM_152773 ENSG00000213123 TCTEX1D2 - Tctex1 domain containing 2 protein-coding 20854 chr3 185825603 185825707 + 0 NA promoter-TSS (NM_001007225) promoter-TSS (NM_001007225) -599 NR_138486 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 6249 chr11 123062227 123062328 + 0 NA promoter-TSS (NM_006597) promoter-TSS (NM_006597) 58 NM_006597 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 11096 chr16 20114549 20114653 + 0 NA Intergenic Intergenic -40823 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 11305 chr16 48458443 48458535 + 0 NA Intergenic L1ME3A|LINE|L1 -73171 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 12130 chr17 15959322 15959436 + 0 NA intron (NM_000676, intron 1 of 1) L1MC4|LINE|L1 14462 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 14144 chr19 12696552 12696631 + 0 NA promoter-TSS (NM_032301) promoter-TSS (NM_032301) 50 NM_032301 84261 Hs.515154 NM_032301 ENSG00000132004 FBXW9 Fbw9 F-box and WD repeat domain containing 9 protein-coding 8980 chr14 50831139 50831231 + 0 NA promoter-TSS (NM_020921) promoter-TSS (NM_020921) -64 NM_182946 51199 Hs.310429 NM_016350 ENSG00000100503 NIN SCKL7 ninein protein-coding 4947 chr11 17731130 17731234 + 0 NA Intergenic Intergenic -4766 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 12828 chr17 63275433 63275527 + 0 NA intron (NM_025185, intron 7 of 24) intron (NM_025185, intron 7 of 24) 164731 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 28246 chr8 96173231 96173387 + 0 NA Intergenic Intergenic -12517 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1 growth differentiation factor 6 protein-coding 11593 chr16 71564902 71565070 + 0 NA promoter-TSS (NR_103852) promoter-TSS (NR_103852) -30 NR_103852 100132529 Hs.710296 NR_103851 ENSG00000260886 TAT-AS1 - TAT antisense RNA 1 ncRNA 7824 chr12 123131548 123131674 + 0 NA Intergenic Intergenic -21122 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 29328 chr9 78856330 78856338 + 0 NA Intergenic Intergenic 289332 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 1234 chr1 86753866 86753970 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 49348 NM_001206653 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like endophilin B1 protein-coding 22005 chr4 169757884 169758041 + 0 NA promoter-TSS (NM_017867) promoter-TSS (NM_017867) -20 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 23649 chr5 160434160 160434264 + 0 NA Intergenic Intergenic 12302 NM_001282383 9232 Hs.350966 NM_004219 ENSG00000164611 PTTG1 EAP1|HPTTG|PTTG|TUTR1 pituitary tumor-transforming 1 protein-coding 7368 chr12 87427942 87428044 + 0 NA Intergenic Intergenic 97254 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 23458 chr5 148033361 148033408 + 0 NA Intergenic Intergenic -30588 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 8845 chr14 34497075 34497218 + 0 NA Intergenic Intergenic -34884 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 13229 chr18 3624960 3625099 + 0 NA intron (NM_001003809, intron 4 of 9) intron (NM_001003809, intron 4 of 9) 21292 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 19090 chr3 4906414 4906518 + 0 NA promoter-TSS (NR_125914) promoter-TSS (NR_125914) 35 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 15125 chr2 19611993 19612097 + 0 NA Intergenic Intergenic -253434 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transciption factor 1 protein-coding 10961 chr16 4768738 4768880 + 0 NA Intergenic CpG -1591 NM_021646 26048 Hs.513316 NM_021646 ENSG00000103199 ZNF500 ZKSCAN18|ZSCAN50 zinc finger protein 500 protein-coding 25339 chr6 150882213 150882317 + 0 NA intron (NM_001242769, intron 4 of 7) intron (NM_001242769, intron 4 of 7) 15932 NM_001242768 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 29723 chr9 103798798 103798902 + 0 NA Intergenic Intergenic -200859 NR_109803 101928523 NR_109803 LOC101928523 - uncharacterized LOC101928523 ncRNA 21734 chr4 118352928 118353032 + 0 NA promoter-TSS (NM_003619) promoter-TSS (NM_003619) -213 NM_003619 8492 Hs.445857 NM_003619 ENSG00000164099 PRSS12 BSSP-3|BSSP3|MRT1 protease, serine 12 protein-coding 19530 chr3 51941969 51942141 + 0 NA promoter-TSS (NM_004704) promoter-TSS (NM_004704) -114 NM_004704 9136 Hs.153768 NM_004704 ENSG00000114767 RRP9 RNU3IP2|U3-55K ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) protein-coding 7138 chr12 56449159 56449196 + 0 NA TTS (NM_012064) TTS (NM_012064) 288 NM_001330295 8914 Hs.118631 NM_003920 ENSG00000111602 TIMELESS TIM|TIM1|hTIM timeless circadian clock protein-coding 10595 chr15 84588144 84588248 + 0 NA Intergenic Intergenic -12822 NM_181877 54993 Hs.594023 NM_017894 ENSG00000176371 ZSCAN2 ZFP29|ZNF854 zinc finger and SCAN domain containing 2 protein-coding 23031 chr5 112958583 112958678 + 0 NA Intergenic Intergenic -18080 NR_038352 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 714 chr1 40979871 40980008 + 0 NA intron (NR_125440, intron 1 of 17) CpG 640 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|IMD24 CTP synthase 1 protein-coding 12635 chr17 49101219 49101323 + 0 NA Intergenic Intergenic -31189 NM_001159388 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 29372 chr9 82811066 82811216 + 0 NA Intergenic MER41A|LTR|ERV1 251987 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 29987 chr9 116693266 116693373 + 0 NA intron (NM_001099679, intron 1 of 1) MIRb|SINE|MIR 6017 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 28195 chr8 93519307 93519439 + 0 NA intron (NR_033858, intron 7 of 10) MLT1H|LTR|ERVL-MaLR 181060 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 20887 chr3 187750195 187750382 + 0 NA Intergenic Intergenic -4563 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 29787 chr9 107750830 107750916 + 0 NA Intergenic Intergenic -261153 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 11914 chr17 2336433 2336585 + 0 NA 5' UTR (NM_018128, exon 1 of 15) 5' UTR (NM_018128, exon 1 of 15) 875 NM_018128 55720 Hs.388170 NM_018128 ENSG00000167721 TSR1 - TSR1, ribosome maturation factor protein-coding 11429 chr16 57619971 57620138 + 0 NA promoter-TSS (NM_001145770) promoter-TSS (NM_001145770) 56 NM_001145770 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 15916 chr2 85742585 85742660 + 0 NA Intergenic Intergenic -11164 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding 5008 chr11 22703146 22703250 + 0 NA intron (NM_005256, intron 2 of 6) intron (NM_005256, intron 2 of 6) 28425 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 - growth arrest specific 2 protein-coding 14821 chr19 55598934 55599038 + 0 NA intron (NM_032836, intron 1 of 2) intron (NM_032836, intron 1 of 2) 541 NM_032836 84922 Hs.515617 NM_032836 ENSG00000179943 FIZ1 ZNF798 FLT3 interacting zinc finger 1 protein-coding 12283 chr17 29179466 29179563 + 0 NA intron (NM_001346765, intron 1 of 42) intron (NM_001346765, intron 1 of 42) 875 NM_078471 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 19326 chr3 33798544 33798666 + 0 NA promoter-TSS (NM_001256192) promoter-TSS (NM_001256192) 34 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 27589 chr8 26641872 26642018 + 0 NA intron (NM_001386, intron 8 of 13) UCON89|DNA|hAT? 63540 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 19858 chr3 111393160 111393310 + 0 NA Intergenic MER66C|LTR|ERV1 -148844 NR_134917 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 25657 chr7 7492636 7492777 + 0 NA intron (NM_001037763, intron 11 of 34) intron (NM_001037763, intron 11 of 34) 43123 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 16927 chr2 201532875 201532979 + 0 NA intron (NM_001168216, intron 11 of 12) MLT1H2-int|LTR|ERVL-MaLR 81258 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20-related kinase adaptor beta protein-coding 19864 chr3 111610878 111610931 + 0 NA intron (NR_134917, intron 8 of 14) intron (NR_134917, intron 8 of 14) -15569 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 20198 chr3 134364231 134364384 + 0 NA intron (NM_016201, intron 5 of 9) CpG 3555 NR_106885 102466744 NR_106885 ENSG00000277723 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13183 chr17 82836176 82836276 + 0 NA intron (NM_024702, intron 1 of 2) intron (NM_024702, intron 1 of 2) 3829 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 25310 chr6 149363319 149363423 + 0 NA intron (NM_015093, intron 3 of 8) HAL1|LINE|L1 -36988 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin-like modifier 4 protein-coding 24365 chr6 31598693 31598815 + 0 NA Intergenic Intergenic -5769 NM_001145466 259197 Hs.509513 NM_147130 ENSG00000204475 NCR3 1C7|CD337|LY117|MALS|NKp30 natural cytotoxicity triggering receptor 3 protein-coding 30054 chr9 122159751 122159937 + 0 NA promoter-TSS (NM_001318195) promoter-TSS (NM_001318195) -25 NM_001318195 4702 Hs.495039 NM_014222 ENSG00000119421 NDUFA8 CI-19KD|CI-PGIV|PGIV NADH:ubiquinone oxidoreductase subunit A8 protein-coding 1657 chr1 147670496 147670617 + 0 NA promoter-TSS (NR_136633) promoter-TSS (NR_136633) -13 NM_001323625 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 26195 chr7 45978351 45978420 + 0 NA Intergenic Intergenic -57113 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 3009 chr1 235161191 235161310 + 0 NA non-coding (NR_027762, exon 1 of 10) non-coding (NR_027762, exon 1 of 10) 366 NR_144492 23029 Hs.535224 NM_015014 ENSG00000188739 RBM34 - RNA binding motif protein 34 protein-coding 16625 chr2 169092268 169092372 + 0 NA intron (NM_001142271, intron 4 of 4) intron (NM_001142271, intron 4 of 4) 11213 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 24817 chr6 79233923 79234006 + 0 NA intron (NR_040671, intron 1 of 1) CpG 290 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 10692 chr15 90320089 90320233 + 0 NA Intergenic Intergenic 29286 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 26280 chr7 51263852 51263997 + 0 NA intron (NM_001287438, intron 1 of 7) MIRb|SINE|MIR 52937 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 13032 chr17 76132365 76132512 + 0 NA Intergenic Intergenic -8118 NR_040017 100507218 Hs.654866 NR_040017 ENSG00000267128 RNF157-AS1 - RNF157 antisense RNA 1 ncRNA 4659 chr11 460823 460896 + 0 NA intron (NM_001329545, intron 2 of 10) intron (NM_001329545, intron 2 of 10) 10579 NM_030783 81490 Hs.12851 NM_030783 ENSG00000174915 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 25605 chr7 5591611 5591715 + 0 NA Intergenic Intergenic -1142 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 22488 chr5 50303210 50303327 + 0 NA Intergenic L1MEf|LINE|L1 138132 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 17386 chr2 240370293 240370317 + 0 NA Intergenic Intergenic -65393 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 401 chr1 25890615 25890789 + 0 NA intron (NM_001145454, intron 4 of 4) LTR22A|LTR|ERVK 15451 NM_203401 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 5697 chr11 77066730 77066884 + 0 NA promoter-TSS (NM_004055) promoter-TSS (NM_004055) -138 NM_004055 726 Hs.248153 NM_004055 ENSG00000149260 CAPN5 ADNIV|HTRA3|VRNI|nCL-3 calpain 5 protein-coding 26940 chr7 123846528 123846632 + 0 NA intron (NM_012269, intron 1 of 4) L1PBa1|LINE|L1 1411 NM_012269 23553 Hs.28673 NM_012269 ENSG00000106302 HYAL4 CSHY hyaluronoglucosaminidase 4 protein-coding 15240 chr2 27628913 27629049 + 0 NA promoter-TSS (NM_001142683) promoter-TSS (NM_001142683) -15 NM_007266 11321 Hs.18259 NM_007266 ENSG00000198522 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 26519 chr7 84478248 84478352 + 0 NA Intergenic Intergenic -54176 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 186 chr1 12604490 12604594 + 0 NA intron (NM_004753, intron 1 of 5) intron (NM_004753, intron 1 of 5) -8146 NM_001324370 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 16806 chr2 188903138 188903220 + 0 NA Intergenic Intergenic -71194 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A collagen type III alpha 1 chain protein-coding 10033 chr15 45856383 45856487 + 0 NA intron (NR_135680, intron 2 of 4) LTR16B2|LTR|ERVL 151240 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 24070 chr6 13574924 13574996 + 0 NA intron (NM_012241, intron 1 of 9) L2a|LINE|L2 333 NM_012241 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 16982 chr2 207166150 207166301 + 0 NA promoter-TSS (NM_003709) promoter-TSS (NM_003709) -39 NR_073108 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 1914 chr1 160607186 160607345 + 0 NA TTS (NM_003037) TTS (NM_003037) -27749 NM_001184882 8832 Hs.398093 NM_003874 ENSG00000066294 CD84 LY9B|SLAMF5|hCD84|mCD84 CD84 molecule protein-coding 19499 chr3 49673872 49674016 + 0 NA promoter-TSS (NM_001640) promoter-TSS (NM_001640) -58 NM_001640 327 Hs.517969 NM_001640 ENSG00000164062 APEH AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH acylaminoacyl-peptide hydrolase protein-coding 6696 chr12 16524516 16524620 + 0 NA Intergenic Intergenic 80811 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 1705 chr1 151198342 151198526 + 0 NA promoter-TSS (NM_001135636) promoter-TSS (NM_001135636) -110 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 6940 chr12 47820861 47820864 + 0 NA promoter-TSS (NM_001308090) promoter-TSS (NM_001308090) -882 NM_001308090 51564 Hs.200063 NM_015401 ENSG00000061273 HDAC7 HD7|HD7A|HDAC7A histone deacetylase 7 protein-coding 3000 chr1 234997376 234997489 + 0 NA Intergenic Intergenic -33433 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 6729 chr12 22335625 22335773 + 0 NA promoter-TSS (NM_003034) promoter-TSS (NM_003034) -985 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 7512 chr12 100142912 100143016 + 0 NA promoter-TSS (NM_015054) promoter-TSS (NM_015054) -100 NM_015054 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 5260 chr11 56624732 56624836 + 0 NA Intergenic Intergenic -11282 NM_001004740 390168 Hs.553751 NM_001004740 ENSG00000255012 OR5M1 OR11-208|OST050 olfactory receptor family 5 subfamily M member 1 protein-coding 5390 chr11 62832089 62832243 + 0 NA promoter-TSS (NM_001244666) promoter-TSS (NM_001244666) -68 NR_135084 105369332 NR_135084 ENSG00000256690 LOC105369332 - uncharacterized LOC105369332 ncRNA 1986 chr1 165393027 165393209 + 0 NA Intergenic Intergenic 31866 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 21569 chr4 88593077 88593171 + 0 NA intron (NM_014606, intron 1 of 25) CpG 701 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 14240 chr19 17305504 17305686 + 0 NA promoter-TSS (NM_023937) promoter-TSS (NM_023937) -73 NM_023937 64981 Hs.515242 NM_023937 ENSG00000130312 MRPL34 L34mt mitochondrial ribosomal protein L34 protein-coding 23442 chr5 146533454 146533558 + 0 NA Intergenic Intergenic -17393 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|PGR7 G protein-coupled receptor 151 protein-coding 7471 chr12 96457356 96457434 + 0 NA Intergenic Intergenic -32176 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 30804 chrX 69615955 69616011 + 0 NA promoter-TSS (NM_001399) promoter-TSS (NM_001399) -84 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 2060 chr1 170074591 170074803 + 0 NA promoter-TSS (NM_001204514) promoter-TSS (NM_001204514) 41 NM_014970 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 30622 chrX 39908324 39908428 + 0 NA Intergenic MIR|SINE|MIR 70815 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 23004 chr5 110726624 110726728 + 0 NA promoter-TSS (NM_001039763) promoter-TSS (NM_001039763) 73 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 29087 chr9 36317918 36318049 + 0 NA Intergenic Intergenic -40927 NM_001190388 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 14470 chr19 40798999 40799098 + 0 NA promoter-TSS (NM_080732) promoter-TSS (NM_080732) -95 NM_080732 112398 Hs.515417 NM_017555 ENSG00000269858 EGLN2 EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1 egl-9 family hypoxia inducible factor 2 protein-coding 8195 chr13 44232147 44232295 + 0 NA Intergenic Intergenic -36021 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 10699 chr15 90388267 90388308 + 0 NA promoter-TSS (NM_003870) promoter-TSS (NM_003870) 46 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 26745 chr7 102748806 102748809 + 0 NA promoter-TSS (NM_001145268) promoter-TSS (NM_001145268) -145 NR_026879 222234 Hs.202543 NM_147194 ENSG00000222011 FAM185A - family with sequence similarity 185 member A protein-coding 11888 chr17 1067378 1067533 + 0 NA intron (NM_001322840, intron 9 of 22).2 intron (NM_001322840, intron 9 of 22).2 11691 NM_001282149 29 Hs.159306 NM_001092 ENSG00000159842 ABR MDB active BCR-related protein-coding 15432 chr2 43068834 43068938 + 0 NA Intergenic L2a|LINE|L2 -29343 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 20020 chr3 121970188 121970292 + 0 NA Intergenic MER31-int|LTR|ERV1 52040 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 11940 chr17 3668517 3668655 + 0 NA promoter-TSS (NM_001014764) promoter-TSS (NM_001014764) 93 NM_014604 30851 Hs.12956 NM_014604 ENSG00000213977 TAX1BP3 TIP-1|TIP1 Tax1 binding protein 3 protein-coding 12780 chr17 58692520 58692644 + 0 NA promoter-TSS (NM_001201457) promoter-TSS (NM_001201457) 9 NR_103872 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 25917 chr7 27080967 27081071 + 0 NA Intergenic L2c|LINE|L2 14987 NM_005522 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 23244 chr5 134367112 134367260 + 0 NA promoter-TSS (NM_001113575) promoter-TSS (NM_001113575) -112 NM_001113575 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 2904 chr1 228842316 228842420 + 0 NA Intergenic Intergenic 107291 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 11075 chr16 18962525 18962646 + 0 NA Intergenic Intergenic -21349 NM_001324265 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 22904 chr5 95555077 95555248 + 0 NA promoter-TSS (NM_014639) promoter-TSS (NM_014639) 41 NM_198150 153642 Hs.585051 NM_198150 ENSG00000164291 ARSK TSULF arylsulfatase family member K protein-coding 7788 chr12 121888739 121888840 + 0 NA promoter-TSS (NM_001171993) promoter-TSS (NM_001171993) 58 NM_002813 5715 Hs.131151 NM_002813 ENSG00000110801 PSMD9 Rpn4|p27 proteasome 26S subunit, non-ATPase 9 protein-coding 5325 chr11 59901452 59901556 + 0 NA Intergenic Tigger19b|DNA|TcMar-Tigger -34936 NM_001062 6947 Hs.2012 NM_001062 ENSG00000134827 TCN1 HC|TC-1|TC1|TCI transcobalamin 1 protein-coding 19427 chr3 44105065 44105169 + 0 NA Intergenic Intergenic -9095 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 25592 chr7 5190144 5190307 + 0 NA promoter-TSS (NM_001033518) promoter-TSS (NM_001033518) 21 NM_001278299 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 5546 chr11 67119206 67119237 + 0 NA promoter-TSS (NM_012308) promoter-TSS (NM_012308) -48 NM_012308 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 29980 chr9 116288931 116289035 + 0 NA intron (NM_002581, intron 9 of 21) intron (NM_002581, intron 9 of 21) 111623 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 10591 chr15 83747201 83747289 + 0 NA intron (NM_207517, intron 3 of 29) intron (NM_207517, intron 3 of 29) 93159 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 6329 chr11 129024146 129024285 + 0 NA promoter-TSS (NM_014715) promoter-TSS (NM_014715) -22 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 27354 chr8 8519943 8520087 + 0 NA Intergenic MamGypLTR1d|LTR|Gypsy -138181 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related kinase activating pseudokinase 1 protein-coding 3718 chr10 58435435 58435539 + 0 NA Intergenic Intergenic 50344 NM_001270782 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 27243 chr7 152025635 152025639 + 0 NA promoter-TSS (NM_001304514) promoter-TSS (NM_001304514) -37 NM_001304514 63917 Hs.647109 NM_022087 ENSG00000178234 GALNT11 GALNAC-T11|GALNACT11 polypeptide N-acetylgalactosaminyltransferase 11 protein-coding 22534 chr5 54644356 54644460 + 0 NA Intergenic Intergenic 58916 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 2475 chr1 205211656 205211818 + 0 NA promoter-TSS (NM_199462) promoter-TSS (NM_199462) -138 NM_199462 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5 dual serine/threonine and tyrosine protein kinase protein-coding 3834 chr10 70331920 70331952 + 0 NA intron (NR_103467, intron 1 of 2) intron (NR_103467, intron 1 of 2) 44843 NM_001278213 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 16201 chr2 118847810 118847911 + 0 NA 5' UTR (NM_001426, exon 1 of 2) 5' UTR (NM_001426, exon 1 of 2) 323 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 24248 chr6 27096941 27097045 + 0 NA Intergenic CpG 35803 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 24087 chr6 14274672 14274776 + 0 NA Intergenic Intergenic 10730 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 23155 chr5 127698385 127698485 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -4954 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 16585 chr2 164621079 164621210 + 0 NA exon (NM_004490, exon 1 of 14) exon (NM_004490, exon 1 of 14) 706 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 9737 chr14 104116894 104116998 + 0 NA promoter-TSS (NR_029620) promoter-TSS (NR_029620) -459 NR_029620 406986 NR_029620 ENSG00000207568 MIR203A MIR203|MIRN203|hsa-mir-203a|miR-203|miRNA203|mir-203a microRNA 203a ncRNA 19696 chr3 87227204 87227338 + 0 NA promoter-TSS (NM_001244644) promoter-TSS (NM_001244644) 8 NM_001244644 25978 Hs.476930 NM_014043 ENSG00000083937 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 15618 chr2 60881482 60881634 + 0 NA promoter-TSS (NR_033980) promoter-TSS (NR_033980) 63 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 297 chr1 20152412 20152515 + 0 NA Intergenic Intergenic 13133 NM_022819 64600 Hs.302034 NM_022819 ENSG00000158786 PLA2G2F - phospholipase A2 group IIF protein-coding 5491 chr11 65712138 65712292 + 0 NA 5' UTR (NM_182710, exon 1 of 13) 5' UTR (NM_182710, exon 1 of 13) 213 NM_182710 10524 Hs.397010 NM_006388 ENSG00000172977 KAT5 ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2 lysine acetyltransferase 5 protein-coding 8582 chr13 108957686 108957790 + 0 NA exon (NM_015011, exon 17 of 35) exon (NM_015011, exon 17 of 35) 209565 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 4959 chr11 18394380 18394484 + 0 NA promoter-TSS (NM_001165416) promoter-TSS (NM_001165416) 43 NM_001165415 3939 Hs.2795 NM_005566 ENSG00000134333 LDHA GSD11|HEL-S-133P|LDHM|PIG19 lactate dehydrogenase A protein-coding 9291 chr14 69638835 69638968 + 0 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 27308 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 14354 chr19 33373602 33373729 + 0 NA promoter-TSS (NM_001806) promoter-TSS (NM_001806) -4 NM_001806 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT/enhancer binding protein gamma protein-coding 4931 chr11 16918670 16918809 + 0 NA intron (NM_001329631, intron 3 of 22) MER113A|DNA|hAT-Charlie 95677 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 14588 chr19 46206133 46206227 + 0 NA Intergenic Intergenic -3118 NR_135234 645553 Hs.613068 NR_135234 IGFL2-AS1 - IGFL2 antisense RNA 1 ncRNA 2031 chr1 168178711 168178815 + 0 NA promoter-TSS (NM_152902) promoter-TSS (NM_152902) -82 NM_152902 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 30317 chr9 133336112 133336276 + 0 NA promoter-TSS (NM_001278942) promoter-TSS (NM_001278942) 16 NR_103874 6838 Hs.274430 NM_006753 ENSG00000148296 SURF6 RRP14 surfeit 6 protein-coding 23474 chr5 148984526 148984630 + 0 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 77831 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 16751 chr2 180574054 180574158 + 0 NA Intergenic Intergenic -117998 NR_104322 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 980 chr1 61149389 61149509 + 0 NA intron (NM_005595, intron 2 of 9) intron (NM_005595, intron 2 of 9) 67141 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 5957 chr11 101715504 101715528 + 0 NA Intergenic L1MB7|LINE|L1 -131588 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 21341 chr4 48830949 48831061 + 0 NA promoter-TSS (NM_001079840) promoter-TSS (NM_001079840) -38 NM_001079840 54940 Hs.518750 NM_017830 ENSG00000109180 OCIAD1 ASRIJ|OCIA|TPA018 OCIA domain containing 1 protein-coding 13751 chr18 70205974 70206078 + 0 NA promoter-TSS (NM_001318520) promoter-TSS (NM_001318520) -300 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 2097 chr1 175169405 175169509 + 0 NA intron (NM_001319230, intron 1 of 2) MIR|SINE|MIR 23356 NM_001319231 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 7941 chr13 20420078 20420177 + 0 NA intron (NM_015974, intron 5 of 7) intron (NM_015974, intron 5 of 7) 13719 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 13225 chr18 3448159 3448266 + 0 NA intron (NM_173207, intron 1 of 2) CpG 626 NM_173207 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 23292 chr5 137235310 137235340 + 0 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 107128 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 1651 chr1 147242472 147242627 + 0 NA promoter-TSS (NR_046070) promoter-TSS (NR_046070) -92 NM_001256338 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 20057 chr3 124607334 124607438 + 0 NA intron (NM_001322999, intron 1 of 14) L1ME3G|LINE|L1 22727 NM_001323001 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13375 chr18 29155107 29155147 + 0 NA Intergenic L3|LINE|CR1 -977681 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 13643 chr18 58221565 58221669 + 0 NA promoter-TSS (NM_001144966) promoter-TSS (NM_001144966) 95 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 11502 chr16 67521147 67521276 + 0 NA intron (NR_104656, intron 1 of 1) intron (NR_104656, intron 1 of 1) 7534 NR_104656 100505942 Hs.121233 NR_104656 LOC100505942 - uncharacterized LOC100505942 ncRNA 5451 chr11 65006993 65007105 + 0 NA Intergenic Intergenic -7064 NM_001667 402 Hs.502836 NM_001667 ENSG00000213465 ARL2 ARFL2 ADP ribosylation factor like GTPase 2 protein-coding 10496 chr15 77994150 77994342 + 0 NA promoter-TSS (NR_026998) promoter-TSS (NR_026998) -21 NR_026998 91450 Hs.406766 NR_026998 LOC91450 - uncharacterized LOC91450 ncRNA 30514 chrX 15269674 15269778 + 0 NA intron (NM_001168531, intron 2 of 7) intron (NM_001168531, intron 2 of 7) 445 NM_001168530 140462 Hs.19404 NM_024087 ENSG00000102048 ASB9 - ankyrin repeat and SOCS box containing 9 protein-coding 13381 chr18 31011600 31011704 + 0 NA intron (NM_024423, intron 9 of 16) intron (NM_024423, intron 9 of 16) 31163 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 9403 chr14 75985800 75985821 + 0 NA promoter-TSS (NM_001255995) promoter-TSS (NM_001255995) 57 NM_001102564 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3 intraflagellar transport 43 protein-coding 23663 chr5 167699588 167699712 + 0 NA intron (NM_001122679, intron 2 of 28) intron (NM_001122679, intron 2 of 28) -55286 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 29830 chr9 109329437 109329541 + 0 NA Intergenic Intergenic -8525 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 21046 chr3 196136243 196136370 + 0 NA Intergenic Intergenic -6330 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 24725 chr6 54874813 54874917 + 0 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 28094 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 17020 chr2 209431828 209431932 + 0 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 7833 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 24846 chr6 81938486 81938630 + 0 NA Intergenic Intergenic -124366 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 17352 chr2 237687829 237687935 + 0 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) -4282 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 2123 chr1 177898991 177899095 + 0 NA Intergenic Intergenic 70872 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 6778 chr12 27244128 27244236 + 0 NA promoter-TSS (NM_015000) promoter-TSS (NM_015000) 37 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 11234 chr16 30658156 30658289 + 0 NA Intergenic CpG -1297 NM_001105079 64319 Hs.247186 NM_022452 ENSG00000156860 FBRS FBS|FBS1 fibrosin protein-coding 8713 chr14 22919382 22919486 + 0 NA promoter-TSS (NM_001077351) promoter-TSS (NM_001077351) -22 NR_120600 100505758 Hs.655707 NR_120599 ENSG00000237054 PRMT5-AS1 - PRMT5 antisense RNA 1 ncRNA 26365 chr7 67625407 67625476 + 0 NA Intergenic MamGypLTR3|LTR|Gypsy 289465 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000235475 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 9547 chr14 90642482 90642586 + 0 NA promoter-TSS (NR_110134) promoter-TSS (NR_110134) -95 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 28472 chr8 117610685 117610707 + 0 NA Intergenic Intergenic 89983 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 10071 chr15 50247934 50248105 + 0 NA intron (NM_001306146, intron 9 of 10) intron (NM_001306146, intron 9 of 10) 17946 NM_002112 3067 Hs.1481 NM_002112 ENSG00000140287 HDC - histidine decarboxylase protein-coding 17407 chr2 241701528 241701586 + 0 NA promoter-TSS (NM_001330162) promoter-TSS (NM_001330162) -462 NM_032329 84289 Hs.529172 NM_032329 ENSG00000168395 ING5 p28ING5 inhibitor of growth family member 5 protein-coding 30411 chrUn_GL000216v2 147450 147554 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 3701 chr10 56346965 56347069 + 0 NA Intergenic Intergenic 14256 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 18460 chr21 30146847 30146878 + 0 NA Intergenic Intergenic 19791 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 15630 chr2 61764373 61764506 + 0 NA Intergenic CpG 89704 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161 member A protein-coding 17826 chr20 29262766 29262796 + 0 NA Intergenic ALR/Alpha|Satellite|centr 154180 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 2675 chr1 214574978 214575082 + 0 NA Intergenic Intergenic -23349 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 24785 chr6 72748906 72749010 + 0 NA intron (NM_001160133, intron 1 of 14) intron (NM_001160133, intron 1 of 14) 118463 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 26553 chr7 88184931 88185035 + 0 NA intron (NM_001324421, intron 28 of 28) intron (NM_001324421, intron 28 of 28) -31677 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 21491 chr4 80017518 80017622 + 0 NA intron (NM_001145794, intron 11 of 15) intron (NM_001145794, intron 11 of 15) 55753 NM_001145794 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF anthrax toxin receptor 2 protein-coding 22097 chr4 184734106 184734266 + 0 NA promoter-TSS (NM_024629) promoter-TSS (NM_024629) -54 NR_104593 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 6756 chr12 25958560 25958568 + 0 NA promoter-TSS (NM_007211) promoter-TSS (NM_007211) -467 NM_001164748 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 10673 chr15 89690667 89690860 + 0 NA promoter-TSS (NM_020212) promoter-TSS (NM_020212) 21 NM_003847 8800 Hs.31034 NM_003847 ENSG00000166821 PEX11A PEX11-ALPHA|PMP28|hsPEX11p peroxisomal biogenesis factor 11 alpha protein-coding 11311 chr16 48687523 48687627 + 0 NA Intergenic Intergenic -77366 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 1287 chr1 90512635 90512739 + 0 NA Intergenic Intergenic 204550 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 10644 chr15 88546457 88546561 + 0 NA promoter-TSS (NR_135743) promoter-TSS (NR_135743) -134 NR_135744 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - de-etiolated homolog 1 (Arabidopsis) protein-coding 17397 chr2 241149431 241149617 + 0 NA promoter-TSS (NM_001252124) promoter-TSS (NM_001252124) -20 NM_001252124 23178 Hs.397891 NM_015148 ENSG00000115687 PASK PASKIN|STK37 PAS domain containing serine/threonine kinase protein-coding 29150 chr9 69951603 69951683 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -91938 NR_125850 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 16021 chr2 100902992 100903186 + 0 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 74072 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 16525 chr2 158968537 158968641 + 0 NA promoter-TSS (NM_001145909) promoter-TSS (NM_001145909) -45 NM_001145909 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 22900 chr5 94693489 94693506 + 0 NA intron (NM_032290, intron 20 of 20) intron (NM_032290, intron 20 of 20) 74811 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 24068 chr6 13487535 13487710 + 0 NA promoter-TSS (NM_018988) promoter-TSS (NM_018988) 15 NM_018988 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 10883 chr16 2215058 2215186 + 0 NA promoter-TSS (NM_001042371) promoter-TSS (NM_001042371) -301 NM_001042371 283871 Hs.442634 NM_001042371 ENSG00000184207 PGP AUM|G3PP|PGPase phosphoglycolate phosphatase protein-coding 11736 chr16 81929168 81929322 + 0 NA intron (NM_002661, intron 24 of 32) intron (NM_002661, intron 24 of 32) 82243 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 27033 chr7 132145608 132145738 + 0 NA intron (NM_020911, intron 28 of 31) intron (NM_020911, intron 28 of 31) -115188 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 12034 chr17 7329405 7329553 + 0 NA promoter-TSS (NM_032442) promoter-TSS (NM_032442) -160 NM_032442 84461 Hs.654794 NM_032442 ENSG00000215041 NEURL4 - neuralized E3 ubiquitin protein ligase 4 protein-coding 4278 chr10 103479206 103479338 + 0 NA promoter-TSS (NM_001129742) promoter-TSS (NM_001129742) -32 NM_001129742 119395 Hs.364624 NM_182494 ENSG00000183128 CALHM3 FAM26A|bA225H22.7 calcium homeostasis modulator 3 protein-coding 12227 chr17 23016222 23016376 + 0 NA Intergenic ALR/Alpha|Satellite|centr 493188 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2-like 1 protein-coding 10559 chr15 81313208 81313361 + 0 NA TTS (NM_001172128) TTS (NM_001172128) 10899 NR_135013 80765 Hs.513075 NM_030574 ENSG00000172345 STARD5 - StAR related lipid transfer domain containing 5 protein-coding 15498 chr2 46970771 46970907 + 0 NA intron (NM_020458, intron 3 of 19) intron (NM_020458, intron 3 of 19) -28984 NM_001171511 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 16109 chr2 109558665 109558792 + 0 NA intron (NM_144710, intron 8 of 10) intron (NM_144710, intron 8 of 10) 54929 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPT10 - septin 10 protein-coding 25274 chr6 145110220 145110330 + 0 NA Intergenic Intergenic -624594 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 22284 chr5 17118778 17118882 + 0 NA Intergenic Intergenic -97993 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 12907 chr17 69235568 69235672 + 0 NA promoter-TSS (NR_130736) promoter-TSS (NR_130736) -608 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 15768 chr2 70524358 70524462 + 0 NA intron (NM_001099691, intron 1 of 5) intron (NM_001099691, intron 1 of 5) 29228 NM_001308158 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 28136 chr8 86031552 86031597 + 0 NA Intergenic L1MEd|LINE|L1 38123 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 18451 chr21 29024921 29025004 + 0 NA intron (NM_001001992, intron 1 of 17) CpG 345 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 29478 chr9 88197987 88198039 + 0 NA Intergenic Intergenic -63028 NM_001166137 645961 Hs.580879 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 19210 chr3 15601667 15601732 + 0 NA promoter-TSS (NM_001281724) promoter-TSS (NM_001281724) -46 NM_001281726 686 Hs.444197 NM_000060 ENSG00000169814 BTD - biotinidase protein-coding 18767 chr22 29821395 29821549 + 0 NA intron (NM_001242906, intron 4 of 18) MIRb|SINE|MIR 16832 NM_001242906 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 14321 chr19 29213123 29213293 + 0 NA promoter-TSS (NM_006003) promoter-TSS (NM_006003) 21 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 7480 chr12 97568840 97568990 + 0 NA Intergenic Intergenic 5103 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 18075 chr20 44885542 44885673 + 0 NA promoter-TSS (NM_003404) promoter-TSS (NM_003404) 8 NM_003404 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 1744 chr1 152442827 152442975 + 0 NA Intergenic Intergenic -28627 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 16185 chr2 114022411 114022522 + 0 NA Intergenic MLT2C2|LTR|ERVL -42482 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 30443 chrX 2391999 2392103 + 0 NA intron (NM_145177, intron 3 of 6) intron (NM_145177, intron 3 of 6) 108488 NM_001171135 9189 Hs.131452 NM_004729 ENSG00000214717 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger BED-type containing 1 protein-coding 30413 chrUn_GL000216v2 167801 167955 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 864 chr1 51558481 51558634 + 0 NA Intergenic LTR8|LTR|ERV1 -39234 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 19829 chr3 108091051 108091087 + 0 NA promoter-TSS (NM_001777) promoter-TSS (NM_001777) 19 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 1170 chr1 81702974 81703078 + 0 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 3256 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 27055 chr7 134986422 134986549 + 0 NA promoter-TSS (NM_178563) promoter-TSS (NM_178563) -23 NM_001345851 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 11597 chr16 71723836 71724074 + 0 NA intron (NM_015020, intron 1 of 18) CpG 746 NM_015020 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 16770 chr2 181891592 181891825 + 0 NA promoter-TSS (NM_001287505) promoter-TSS (NM_001287505) -8 NM_001287504 6744 Hs.196983 NM_006751 ENSG00000138434 SSFA2 CS-1|CS1|KRAP|SPAG13 sperm specific antigen 2 protein-coding 14941 chr2 6917504 6917571 + 0 NA 5' UTR (NM_014746, exon 1 of 9) 5' UTR (NM_014746, exon 1 of 9) 145 NM_014746 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4 ring finger protein 144A protein-coding 9561 chr14 91872649 91872789 + 0 NA intron (NM_006329, intron 10 of 10) intron (NM_006329, intron 10 of 10) -5183 NM_001128596 123036 Hs.510262 NM_152332 ENSG00000165929 TC2N C14orf47|C2CD1|MTAC2D1|Tac2-N tandem C2 domains, nuclear protein-coding 11585 chr16 70801130 70801304 + 0 NA promoter-TSS (NM_018052) promoter-TSS (NM_018052) -59 NM_018052 55697 Hs.445061 NM_018052 ENSG00000103043 VAC14 ArPIKfyve|SNDC|TAX1BP2|TRX Vac14, PIKFYVE complex component protein-coding 28273 chr8 98466639 98466696 + 0 NA intron (NM_001256312, intron 12 of 12) intron (NM_001256312, intron 12 of 12) 39645 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 16094 chr2 108621120 108621224 + 0 NA promoter-TSS (NM_001193484) promoter-TSS (NM_001193484) -74 NM_001193484 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 14907 chr2 1625380 1625437 + 0 NA Intergenic Intergenic 119139 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 16039 chr2 101396395 101396499 + 0 NA TTS (NM_001145664) TTS (NM_001145664) -8944 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 4143 chr10 96587039 96587081 + 0 NA promoter-TSS (NM_020123) promoter-TSS (NM_020123) -8 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 22861 chr5 90202069 90202132 + 0 NA intron (NR_120601, intron 3 of 5) intron (NR_120601, intron 3 of 5) 87971 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 12836 chr17 63773592 63773696 + 0 NA promoter-TSS (NM_020198) promoter-TSS (NM_020198) 84 NM_020198 57003 Hs.202011 NM_020198 ENSG00000108588 CCDC47 GK001|MSTP041 coiled-coil domain containing 47 protein-coding 18031 chr20 41268482 41268631 + 0 NA intron (NM_015035, intron 2 of 3) intron (NM_015035, intron 2 of 3) 31543 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 1674 chr1 150269023 150269158 + 0 NA non-coding (NR_045034, exon 1 of 4) non-coding (NR_045034, exon 1 of 4) 119 NM_001243771 51107 Hs.108408 NM_016022 ENSG00000117362 APH1A 6530402N02Rik|APH-1|APH-1A|CGI-78 aph-1 homolog A, gamma-secretase subunit protein-coding 5837 chr11 92122707 92122811 + 0 NA Intergenic Intergenic -229337 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 25846 chr7 22859146 22859277 + 0 NA Intergenic Intergenic 2598 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 5862 chr11 93850407 93850549 + 0 NA promoter-TSS (NM_001144871) promoter-TSS (NM_001144871) 24 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 18642 chr22 20080094 20080112 + 0 NA promoter-TSS (NM_001190326) promoter-TSS (NM_001190326) -129 NM_022720 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8, microprocessor complex subunit protein-coding 26590 chr7 92447284 92447451 + 0 NA promoter-TSS (NR_052016) promoter-TSS (NR_052016) -81 NM_021167 57798 Hs.21145 NM_021167 ENSG00000157259 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 17185 chr2 224585675 224585779 + 0 NA promoter-TSS (NM_001257197) promoter-TSS (NM_001257197) -330 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 22430 chr5 40518526 40518649 + 0 NA Intergenic Intergenic -161343 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 8761 chr14 24299755 24299907 + 0 NA promoter-TSS (NM_138452) promoter-TSS (NM_138452) 2 NM_001136050 115817 Hs.348350 NM_138452 ENSG00000157379 DHRS1 SDR19C1 dehydrogenase/reductase 1 protein-coding 17503 chr20 4162124 4162179 + 0 NA intron (NM_175842, intron 1 of 8) intron (NM_175842, intron 1 of 8) 13372 NM_175841 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 84 chr1 6472116 6472261 + 0 NA intron (NM_198681, intron 11 of 21) L2b|LINE|L2 -5993 NM_148970 8718 Hs.462529 NM_003790 ENSG00000215788 TNFRSF25 APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR TNF receptor superfamily member 25 protein-coding 4396 chr10 114372355 114372459 + 0 NA intron (NM_032550, intron 1 of 18) intron (NM_032550, intron 1 of 18) 32371 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 14687 chr19 49453453 49453594 + 0 NA intron (NM_153329, intron 1 of 16) CpG 307 NM_001145396 126133 Hs.719998 NM_153329 ENSG00000161618 ALDH16A1 - aldehyde dehydrogenase 16 family member A1 protein-coding 437 chr1 26900421 26900450 + 0 NA promoter-TSS (NM_022078) promoter-TSS (NM_022078) 36 NM_022078 63906 Hs.10903 NM_022078 ENSG00000198746 GPATCH3 GPATC3 G-patch domain containing 3 protein-coding 1768 chr1 153627486 153627606 + 0 NA promoter-TSS (NM_006271) promoter-TSS (NM_006271) 95 NM_001024211 6284 Hs.516505 NM_005979 ENSG00000189171 S100A13 - S100 calcium binding protein A13 protein-coding 6429 chr12 510617 510674 + 0 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 50268 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 8309 chr13 54210758 54210929 + 0 NA Intergenic MER77|LTR|ERVL -77972 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 12959 chr17 73192676 73192724 + 0 NA promoter-TSS (NM_018714) promoter-TSS (NM_018714) -334 NM_018714 9382 Hs.103555 NM_018714 ENSG00000166685 COG1 CDG2G|LDLB component of oligomeric golgi complex 1 protein-coding 30113 chr9 125538212 125538344 + 0 NA intron (NM_001006618, intron 7 of 7) L2|LINE|L2 168956 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 24955 chr6 104525825 104525929 + 0 NA Intergenic Intergenic 333669 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 19404 chr3 41962174 41962211 + 0 NA non-coding (NR_136342, exon 1 of 35) non-coding (NR_136342, exon 1 of 35) 248 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 6781 chr12 27343746 27343850 + 0 NA intron (NM_001248005, intron 1 of 13) intron (NM_001248005, intron 1 of 13) 10944 NM_001248002 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 6325 chr11 128522574 128522678 + 0 NA promoter-TSS (NM_005238) promoter-TSS (NM_005238) -225 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 24347 chr6 30839778 30839911 + 0 NA non-coding (NR_134610, exon 3 of 3).4 non-coding (NR_134610, exon 3 of 3).4 8315 NR_134610 105375014 Hs.551770 NR_134610 ENSG00000237923 LOC105375014 - uncharacterized LOC105375014 ncRNA 6595 chr12 10395849 10395908 + 0 NA intron (NM_001199805, intron 4 of 12) intron (NM_001199805, intron 4 of 12) -5824 NM_007360 22914 Hs.387787 NM_007360 ENSG00000213809 KLRK1 CD314|D12S2489E|KLR|NKG2-D|NKG2D killer cell lectin like receptor K1 protein-coding 27594 chr8 27333121 27333225 + 0 NA intron (NM_173175, intron 1 of 29) L2a|LINE|L2 7609 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 4212 chr10 100229561 100229708 + 0 NA promoter-TSS (NM_001278) promoter-TSS (NM_001278) -24 NM_001320928 1147 Hs.198998 NM_001278 ENSG00000213341 CHUK IKBKA|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16 conserved helix-loop-helix ubiquitous kinase protein-coding 30859 chrX 81121712 81121828 + 0 NA intron (NM_030763, intron 1 of 6) intron (NM_030763, intron 1 of 6) -80034 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 16497 chr2 156437986 156438136 + 0 NA intron (NM_000408, intron 1 of 16) L2a|LINE|L2 1673 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 6451 chr12 2794888 2795065 + 0 NA promoter-TSS (NM_002014) promoter-TSS (NM_002014) 34 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FK506 binding protein 4 protein-coding 23128 chr5 125277629 125277775 + 0 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -215559 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 11902 chr17 1793491 1793572 + 0 NA intron (NM_052928, intron 5 of 10) MLT1H|LTR|ERVL-MaLR 21860 NM_001329905 5176 Hs.532768 NM_002615 ENSG00000132386 SERPINF1 EPC-1|OI12|OI6|PEDF|PIG35 serpin family F member 1 protein-coding 14346 chr19 32972010 32972204 + 0 NA promoter-TSS (NM_032816) promoter-TSS (NM_032816) -78 NM_032816 84902 Hs.599703 NM_032816 ENSG00000121289 CEP89 CCDC123|CEP123 centrosomal protein 89 protein-coding 21755 chr4 121690817 121690921 + 0 NA intron (NM_001154, intron 2 of 12) intron (NM_001154, intron 2 of 12) 6123 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 20072 chr3 125595361 125595465 + 0 NA 5' UTR (NM_022776, exon 1 of 13) 5' UTR (NM_022776, exon 1 of 13) 124 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 8361 chr13 75482268 75482322 + 0 NA promoter-TSS (NM_001286658) promoter-TSS (NM_001286658) -127 NM_001286659 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 6827 chr12 31324229 31324333 + 0 NA promoter-TSS (NR_026806) promoter-TSS (NR_026806) -35 NR_026806 79857 Hs.534485 NM_024799 ENSG00000177340 FLJ13224 - uncharacterized LOC79857 ncRNA 9768 chr14_GL000225v1_random 39128 39265 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 21773 chr4 124712014 124712118 + 0 NA intron (NM_020337, intron 1 of 4) intron (NM_020337, intron 1 of 4) 666 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 10520 chr15 79596197 79596319 + 0 NA Intergenic Intergenic 163742 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 KIAA1024 - KIAA1024 protein-coding 20136 chr3 129794645 129794749 + 0 NA intron (NM_001128224, intron 3 of 5) intron (NM_001128224, intron 3 of 5) 85862 NM_001017395 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 17223 chr2 227462775 227462879 + 0 NA Intergenic Intergenic -9305 NR_049888 100847081 NR_049888 MIR5703 mir-5703 microRNA 5703 ncRNA 17954 chr20 36835688 36835829 + 0 NA intron (NM_080627, intron 2 of 14) intron (NM_080627, intron 2 of 14) 24115 NM_199181 140710 Hs.460807 NM_080627 ENSG00000149639 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 4296 chr10 104120958 104121111 + 0 NA Intergenic Intergenic -1024 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 15190 chr2 25342570 25342589 + 0 NA promoter-TSS (NM_175629) promoter-TSS (NM_175629) 11 NR_135490 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 26489 chr7 80312498 80312602 + 0 NA Intergenic LTR16|LTR|ERVL 61889 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 1430 chr1 106659966 106660092 + 0 NA Intergenic L1MA1|LINE|L1 -396616 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 14770 chr19 53981268 53981392 + 0 NA promoter-TSS (NR_030632) promoter-TSS (NR_030632) -977 NR_030632 100126325 NR_030632 ENSG00000142408 MIR935 MIRN935|hsa-mir-935|mir-935 microRNA 935 ncRNA 1145 chr1 77825460 77825564 + 0 NA intron (NM_001270384, intron 7 of 15) intron (NM_001270384, intron 7 of 15) 45888 NM_198549 374986 Hs.437755 NM_198549 ENSG00000180488 MIGA1 FAM73A mitoguardin 1 protein-coding 13453 chr18 36532551 36532788 + 0 NA intron (NM_025135, intron 5 of 24) intron (NM_025135, intron 5 of 24) 130749 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 9381 chr14 75002592 75002682 + 0 NA promoter-TSS (NM_014239) promoter-TSS (NM_014239) -272 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 6749 chr12 25386190 25386386 + 0 NA Intergenic CpG -135357 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 13613 chr18 54828323 54828464 + 0 NA promoter-TSS (NM_004163) promoter-TSS (NM_004163) -84 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 28298 chr8 100417037 100417141 + 0 NA Intergenic Intergenic 34326 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 4794 chr11 9384546 9384627 + 0 NA promoter-TSS (NM_006391) promoter-TSS (NM_006391) -36 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 23889 chr6 2843404 2843508 + 0 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -1407 NR_073112 1992 Hs.381167 NM_030666 ENSG00000021355 SERPINB1 EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin family B member 1 protein-coding 26510 chr7 83547631 83547802 + 0 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 93715 NM_001178129 9723 Hs.528721 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 10461 chr15 75104860 75105047 + 0 NA Intergenic Intergenic 61684 NM_001301105 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 30773 chrX 64205748 64205899 + 0 NA promoter-TSS (NM_152424) promoter-TSS (NM_152424) -79 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 28164 chr8 89757686 89757835 + 0 NA promoter-TSS (NM_003821) promoter-TSS (NM_003821) 13 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 3697 chr10 53844141 53844245 + 0 NA intron (NM_033056, intron 28 of 32) L2a|LINE|L2 -642037 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 1999 chr1 165903796 165903948 + 0 NA intron (NM_012474, intron 5 of 6) intron (NM_012474, intron 5 of 6) -4049 NR_037431 100500832 NR_037431 ENSG00000143179 MIR3658 - microRNA 3658 ncRNA 24334 chr6 30717588 30717692 + 0 NA promoter-TSS (NM_014641).7 promoter-TSS (NM_014641).7 41 NM_014641 9656 Hs.653495 NM_014641 ENSG00000137337 MDC1 NFBD1 mediator of DNA damage checkpoint 1 protein-coding 9678 chr14 100708434 100708538 + 0 NA Intergenic Intergenic -18379 NM_003836 8788 Hs.116631 NM_003836 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta like non-canonical Notch ligand 1 protein-coding 9000 chr14 51989414 51989544 + 0 NA promoter-TSS (NM_016039) promoter-TSS (NM_016039) -31 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 C14orf166 CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE1 chromosome 14 open reading frame 166 protein-coding 18778 chr22 30212746 30212864 + 0 NA Intergenic MIRc|SINE|MIR 34046 NM_001257135 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 6082 chr11 112025385 112025469 + 0 NA 5' UTR (NM_001931, exon 1 of 14) 5' UTR (NM_001931, exon 1 of 14) 613 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 15776 chr2 71068555 71068659 + 0 NA exon (NM_017567, exon 1 of 10) exon (NM_017567, exon 1 of 10) 329 NM_001330426 55577 Hs.7036 NM_017567 ENSG00000124357 NAGK GNK|HSA242910 N-acetylglucosamine kinase protein-coding 28300 chr8 100443216 100443320 + 0 NA Intergenic Intergenic 60505 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 23261 chr5 134904724 134904799 + 0 NA promoter-TSS (NM_032151) promoter-TSS (NM_032151) -359 NM_032151 84105 Hs.710014 NM_032151 ENSG00000132570 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding 24005 chr6 10140971 10141069 + 0 NA Intergenic Intergenic -271298 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 26718 chr7 100983554 100983697 + 0 NA intron (NM_001164462, intron 1 of 11) L2b|LINE|L2 14002 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 20358 chr3 149086462 149086551 + 0 NA promoter-TSS (NM_003071) promoter-TSS (NM_003071) 48 NM_001318934 6596 Hs.3068 NM_003071 ENSG00000071794 HLTF HIP116|HIP116A|HLTF1|RNF80|SMARCA3|SNF2L3|ZBU1 helicase like transcription factor protein-coding 28893 chr9 4679527 4679677 + 0 NA promoter-TSS (NR_121597) promoter-TSS (NR_121597) 49 NM_017913 55664 Hs.666439 NM_017913 ENSG00000106993 CDC37L1 CDC37B|HARC cell division cycle 37 like 1 protein-coding 17843 chr20 31602952 31603056 + 0 NA Intergenic MIRb|SINE|MIR -2279 NM_181353 3397 Hs.504609 NM_002165 ENSG00000125968 ID1 ID|bHLHb24 inhibitor of DNA binding 1, HLH protein protein-coding 13851 chr19 1095388 1095574 + 0 NA promoter-TSS (NM_001316323) promoter-TSS (NM_001316323) -89 NM_001316324 5434 Hs.24301 NM_002695 ENSG00000099817 POLR2E RPABC1|RPB5|XAP4|hRPB25|hsRPB5 RNA polymerase II subunit E protein-coding 31152 chrX 151753443 151753631 + 0 NA Intergenic Intergenic 18791 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 7985 chr13 24851623 24851765 + 0 NA intron (NM_031277, intron 24 of 35) intron (NM_031277, intron 24 of 35) 71195 NR_047595 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 16143 chr2 112255011 112255172 + 0 NA promoter-TSS (NM_032494) promoter-TSS (NM_032494) -4 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 25132 chr6 127586427 127586531 + 0 NA intron (NM_001010905, intron 4 of 5) MER61C|LTR|ERV1 9305 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 22213 chr5 10551432 10551509 + 0 NA Intergenic Intergenic -12853 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 30501 chrX 13398604 13398708 + 0 NA Intergenic Intergenic 63415 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 13507 chr18 46193166 46193276 + 0 NA intron (NM_145055, intron 1 of 4) intron (NM_145055, intron 1 of 4) 19199 NM_145055 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 24996 chr6 108947616 108947761 + 0 NA intron (NM_032131, intron 12 of 17) intron (NM_032131, intron 12 of 17) -23585 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 19239 chr3 20054760 20054896 + 0 NA intron (NM_003884, intron 1 of 17) intron (NM_003884, intron 1 of 17) 14796 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 22774 chr5 78984920 78984938 + 0 NA intron (NM_000046, intron 1 of 7) CpG 1014 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 18132 chr20 47392131 47392275 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -35314 NM_183048 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 9517 chr14 88824591 88824680 + 0 NA 5' UTR (NM_001288781, exon 2 of 16) 5' UTR (NM_001288781, exon 2 of 16) 482 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 1722 chr1 151790539 151790643 + 0 NA promoter-TSS (NM_006862) promoter-TSS (NM_006862) -57 NM_006862 11022 Hs.144439 NM_006862 ENSG00000182134 TDRKH TDRD2 tudor and KH domain containing protein-coding 24154 chr6 19538255 19538414 + 0 NA Intergenic Intergenic 88513 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 30364 chr9 136693933 136694093 + 0 NA Intergenic Intergenic -6554 NM_006412 10555 Hs.320151 NM_006412 ENSG00000169692 AGPAT2 1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta 1-acylglycerol-3-phosphate O-acyltransferase 2 protein-coding 20586 chr3 167735622 167735745 + 0 NA promoter-TSS (NM_007217) promoter-TSS (NM_007217) 39 NM_001122752 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 21125 chr4 2963360 2963560 + 0 NA promoter-TSS (NM_182982) promoter-TSS (NM_182982) 46 NM_001291979 8602 Hs.627133 NM_003703 ENSG00000087269 NOP14 C4orf9|NOL14|RES4-25|RES425|UTP2 NOP14 nucleolar protein protein-coding 950 chr1 58848885 58849060 + 0 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 63821 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 8481 chr13 98485000 98485097 + 0 NA intron (NM_001032296, intron 2 of 10) intron (NM_001032296, intron 2 of 10) 37077 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 3429 chr10 23834300 23834404 + 0 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 139606 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 1992 chr1 165631994 165632098 + 0 NA intron (NM_004528, intron 1 of 5) intron (NM_004528, intron 1 of 5) 1173 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 3073 chr1 241583174 241583278 + 0 NA intron (NM_003679, intron 10 of 14) L1M1|LINE|L1 51092 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 6912 chr12 45233058 45233169 + 0 NA intron (NM_001142679, intron 1 of 19) intron (NM_001142679, intron 1 of 19) -17107 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 PLEKHA9 pleckstrin homology domain containing A8 pseudogene 1 pseudo 24593 chr6 43481691 43481795 + 0 NA intron (NM_001146018, intron 3 of 10) intron (NM_001146018, intron 3 of 10) 4220 NR_027394 93643 Hs.520145 NM_080604 ENSG00000137221 TJAP1 PILT|TJP4 tight junction associated protein 1 protein-coding 1466 chr1 109112732 109112888 + 0 NA intron (NM_001122961, intron 1 of 4) intron (NM_001122961, intron 1 of 4) 1047 NM_001122961 127003 Hs.446962 NM_001122961 ENSG00000179902 C1orf194 - chromosome 1 open reading frame 194 protein-coding 20736 chr3 179261453 179261557 + 0 NA intron (NM_171828, intron 1 of 3) CpG -1614 NM_171829 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 20160 chr3 131795522 131795626 + 0 NA intron (NM_153429, intron 3 of 16) MER72|LTR|ERV1 190357 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 10466 chr15 75451976 75452080 + 0 NA promoter-TSS (NM_015477) promoter-TSS (NM_015477) -282 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 4248 chr10 102245425 102245474 + 0 NA promoter-TSS (NM_004193) promoter-TSS (NM_004193) -49 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 9824 chr15 31465436 31465629 + 0 NA Intergenic Intergenic 138677 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 4534 chr10 122364131 122364235 + 0 NA Intergenic Intergenic -10395 NM_001001974 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 11689 chr16 78748611 78748715 + 0 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 649250 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 30147 chr9 127556146 127556281 + 0 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 12904 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 26933 chr7 123647268 123647273 + 0 NA Intergenic LTR8|LTR|ERV1 -8537 NM_207163 442721 Hs.592260 NM_207163 ENSG00000170807 LMOD2 C-LMOD|CLMOD leiomodin 2 protein-coding 22526 chr5 53560847 53560951 + 0 NA intron (NR_134473, intron 1 of 5) CpG 266 NR_134474 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ NADH:ubiquinone oxidoreductase subunit S4 protein-coding 15311 chr2 31414820 31414927 + 0 NA promoter-TSS (NM_000379) promoter-TSS (NM_000379) -128 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 10383 chr15 70763460 70763641 + 0 NA promoter-TSS (NM_018003) promoter-TSS (NM_018003) -39 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 10096 chr15 51829616 51829756 + 0 NA promoter-TSS (NM_014547) promoter-TSS (NM_014547) 58 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 25977 chr7 30594846 30594896 + 0 NA promoter-TSS (NM_002047) promoter-TSS (NM_002047) -22 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 11541 chr16 68744913 68745064 + 0 NA intron (NM_004360, intron 2 of 15) intron (NM_004360, intron 2 of 15) 2472 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 26976 chr7 128455784 128455879 + 0 NA promoter-TSS (NM_001098786) promoter-TSS (NM_001098786) 1 NM_013332 29923 Hs.706124 NM_013332 ENSG00000135245 HILPDA C7orf68|HIG-2|HIG2 hypoxia inducible lipid droplet associated protein-coding 21300 chr4 38818533 38818637 + 0 NA Intergenic LTR78B|LTR|ERV1 -13794 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 5072 chr11 29321871 29321975 + 0 NA Intergenic Intergenic 660470 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 10297 chr15 65400873 65401027 + 0 NA intron (NM_020962, intron 4 of 19) intron (NM_020962, intron 4 of 19) 22122 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 11470 chr16 66278732 66278879 + 0 NA Intergenic L1PA15-16|LINE|L1 -87802 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 7664 chr12 112013328 112013434 + 0 NA promoter-TSS (NM_001034025) promoter-TSS (NM_001034025) 33 NM_006817 10961 Hs.75841 NM_006817 ENSG00000089248 ERP29 C12orf8|ERp28|ERp31|HEL-S-107|PDI-DB|PDIA9 endoplasmic reticulum protein 29 protein-coding 20304 chr3 142117223 142117374 + 0 NA intron (NM_001178139, intron 1 of 12) L1MC4|LINE|L1 32246 NM_001178139 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 6411 chr11 134253398 134253553 + 0 NA promoter-TSS (NM_001037304) promoter-TSS (NM_001037304) -65 NM_014384 27034 Hs.14791 NM_014384 ENSG00000151498 ACAD8 ACAD-8|ARC42 acyl-CoA dehydrogenase family member 8 protein-coding 12438 chr17 39730552 39730648 + 0 NA promoter-TSS (NM_032339) promoter-TSS (NM_032339) -37 NM_032339 84299 Hs.333526 NM_032339 ENSG00000141741 MIEN1 C17orf37|C35|ORB3|RDX12|XTP4 migration and invasion enhancer 1 protein-coding 15158 chr2 20584731 20584743 + 0 NA Intergenic Intergenic 7811 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 12629 chr17 48817045 48817067 + 0 NA promoter-TSS (NM_001130918) promoter-TSS (NM_001130918) 51 NM_001130918 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 7586 chr12 106303245 106303349 + 0 NA intron (NM_152772, intron 1 of 9) CpG 506 NM_152772 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 27569 chr8 26045372 26045518 + 0 NA promoter-TSS (NM_022659) promoter-TSS (NM_022659) -321 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 early B-cell factor 2 protein-coding 18191 chr20 50645634 50645782 + 0 NA non-coding (NR_111906, exon 2 of 3) non-coding (NR_111906, exon 2 of 3) 237 NR_111906 100506175 Hs.658270 NR_111906 ENSG00000234693 LOC100506175 - uncharacterized LOC100506175 ncRNA 16998 chr2 207711495 207711593 + 0 NA promoter-TSS (NM_001142300) promoter-TSS (NM_001142300) 4 NM_152523 151195 Hs.471234 NM_152523 ENSG00000163249 CCNYL1 - cyclin Y like 1 protein-coding 3854 chr10 71713447 71713559 + 0 NA 3' UTR (NM_001164375, exon 2 of 2) 3' UTR (NM_001164375, exon 2 of 2) 6318 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 12758 chr17 57868240 57868344 + 0 NA intron (NM_001292025, intron 7 of 10) intron (NM_001292025, intron 7 of 10) -18220 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 7744 chr12 120201157 120201323 + 0 NA promoter-TSS (NR_038924) promoter-TSS (NR_038924) -29 NM_053275 6175 Hs.546285 NM_001002 ENSG00000089157 RPLP0 L10E|LP0|P0|PRLP0|RPP0 ribosomal protein lateral stalk subunit P0 protein-coding 14234 chr19 17245957 17246061 + 0 NA promoter-TSS (NM_005234) promoter-TSS (NM_005234) -667 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 8906 chr14 37596092 37596231 + 0 NA intron (NM_001310135, intron 1 of 32) CpG 962 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 19519 chr3 50337469 50337525 + 0 NA promoter-TSS (NR_109831) promoter-TSS (NR_109831) -14 NR_109831 102060282 NR_109831 ENSG00000281358 RASSF1-AS1 ANRASSF1 RASSF1 antisense RNA 1 ncRNA 1607 chr1 119611703 119611807 + 0 NA Intergenic Intergenic -12464 NR_036540 644242 Hs.515383 NR_036540 ENSG00000260941 LINC00622 - long intergenic non-protein coding RNA 622 ncRNA 19955 chr3 117622749 117622851 + 0 NA Intergenic Intergenic 701369 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 11003 chr16 10617303 10617437 + 0 NA Intergenic Intergenic -36654 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 28498 chr8 118843771 118843947 + 0 NA Intergenic LTR82A|LTR|ERVL 108285 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 27064 chr7 135662362 135662491 + 0 NA promoter-TSS (NM_001130929) promoter-TSS (NM_001130929) -47 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 C7orf73 PL-5283 chromosome 7 open reading frame 73 protein-coding 24546 chr6 42050511 42050615 + 0 NA promoter-TSS (NM_138572) promoter-TSS (NM_138572) 50 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 8036 chr13 29459888 29460065 + 0 NA intron (NM_001033602, intron 7 of 13) intron (NM_001033602, intron 7 of 13) 27774 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 2617 chr1 211830660 211830675 + 0 NA promoter-TSS (NM_001320808) promoter-TSS (NM_001320808) 105 NM_014873 9926 Hs.744851 NM_014873 ENSG00000123684 LPGAT1 FAM34A|FAM34A1|NET8 lysophosphatidylglycerol acyltransferase 1 protein-coding 27092 chr7 139109655 139109806 + 0 NA promoter-TSS (NM_020119) promoter-TSS (NM_020119) -11 NM_024625 56829 Hs.133512 NM_020119 ENSG00000105939 ZC3HAV1 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 zinc finger CCCH-type containing, antiviral 1 protein-coding 4187 chr10 98415125 98415253 + 0 NA promoter-TSS (NM_032709) promoter-TSS (NM_032709) 32 NM_032709 84795 Hs.238303 NM_032709 ENSG00000119943 PYROXD2 C10orf33|FP3420 pyridine nucleotide-disulphide oxidoreductase domain 2 protein-coding 579 chr1 33127478 33127559 + 0 NA Intergenic CpG 45340 NM_001301826 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 30047 chr9 121700382 121700476 + 0 NA intron (NM_032552, intron 3 of 16) intron (NM_032552, intron 3 of 16) -42356 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 22063 chr4 180933819 180933915 + 0 NA Intergenic Intergenic 225282 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 12660 chr17 50087469 50087573 + 0 NA intron (NM_002204, intron 23 of 25) intron (NM_002204, intron 23 of 25) -7216 NM_001199898 5164 Hs.256667 NM_002611 ENSG00000005882 PDK2 PDHK2|PDKII pyruvate dehydrogenase kinase 2 protein-coding 9303 chr14 69818891 69818995 + 0 NA Intergenic Intergenic -21654 NM_003049 6554 Hs.952 NM_003049 ENSG00000100652 SLC10A1 NTCP solute carrier family 10 member 1 protein-coding 27714 chr8 38937213 38937331 + 0 NA intron (NM_021623, intron 3 of 11) intron (NM_021623, intron 3 of 11) 36037 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing A2 protein-coding 30553 chrX 21839556 21839645 + 0 NA promoter-TSS (NM_015884) promoter-TSS (NM_015884) 62 NM_015884 51360 Hs.443490 NM_015884 ENSG00000012174 MBTPS2 BRESEK|IFAP|KFSD|KFSDX|OLMSX|S2P membrane bound transcription factor peptidase, site 2 protein-coding 8220 chr13 45464774 45464808 + 0 NA promoter-TSS (NM_031431) promoter-TSS (NM_031431) -104 NM_031431 83548 Hs.507948 NM_031431 ENSG00000136152 COG3 SEC34 component of oligomeric golgi complex 3 protein-coding 28862 chr9 225229 225375 + 0 NA intron (NM_203447, intron 1 of 47) intron (NM_203447, intron 1 of 47) -9409 NM_152569 157983 Hs.190877 NM_152569 ENSG00000183784 C9orf66 - chromosome 9 open reading frame 66 protein-coding 26298 chr7 54946390 54946478 + 0 NA Intergenic Intergenic -72587 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 4317 chr10 106134494 106134598 + 0 NA Intergenic AluSx4|SINE|Alu -5619 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LOC105378470 - uncharacterized LOC105378470 ncRNA 26423 chr7 74526045 74526149 + 0 NA intron (NM_016328, intron 8 of 26) intron (NM_016328, intron 8 of 26) 72307 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 26037 chr7 35003895 35004028 + 0 NA intron (NM_015283, intron 6 of 21) MER76|LTR|ERVL 34080 NM_015283 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like 1 protein-coding 10145 chr15 55993602 55993684 + 0 NA 5' UTR (NM_006154, exon 1 of 29) 5' UTR (NM_006154, exon 1 of 29) 103 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding 11525 chr16 68265424 68265498 + 0 NA intron (NM_003983, intron 1 of 10) L2b|LINE|L2 945 NM_001076785 9057 Hs.679580 NM_003983 ENSG00000103064 SLC7A6 LAT-2|LAT3|y+LAT-2 solute carrier family 7 member 6 protein-coding 21449 chr4 74410527 74410660 + 0 NA Intergenic Intergenic -34505 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 9173 chr14 63155693 63155797 + 0 NA Intergenic Intergenic -48639 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 9575 chr14 92794131 92794157 + 0 NA promoter-TSS (NM_005113) promoter-TSS (NM_005113) -87 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 237 chr1 16644568 16644626 + 0 NA promoter-TSS (NR_027504) promoter-TSS (NR_027504) -977 NR_027504 11209 Hs.349110 NR_027504 MST1P2 MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3 macrophage stimulating 1 pseudogene 2 pseudo 10029 chr15 45587257 45587405 + 0 NA promoter-TSS (NM_001311256) promoter-TSS (NM_001311256) 208 NM_012388 26258 Hs.7037 NM_012388 ENSG00000104164 BLOC1S6 BLOS6|HPS9|PA|PALLID|PLDN biogenesis of lysosomal organelles complex 1 subunit 6 protein-coding 29119 chr9 63859824 63859968 + 0 NA promoter-TSS (NR_033907) promoter-TSS (NR_033907) -262 NR_033907 642236 Hs.650100 NR_033907 FRG1JP - FSHD region gene 1 family member J, pseudogene pseudo 22731 chr5 74640577 74640699 + 0 NA non-coding (NR_046318, exon 1 of 2) non-coding (NR_046318, exon 1 of 2) 615 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 30494 chrX 12013367 12013448 + 0 NA Intergenic Intergenic -125059 NM_014728 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 25244 chr6 142301862 142301966 + 0 NA promoter-TSS (NM_020455) promoter-TSS (NM_020455) -5 NM_001032394 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 2519 chr1 207032755 207032896 + 0 NA promoter-TSS (NM_001083924) promoter-TSS (NM_001083924) -69 NM_001083924 79098 Hs.32417 NM_023938 ENSG00000182795 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 15093 chr2 17417141 17417313 + 0 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 101212 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 16303 chr2 128746444 128746583 + 0 NA Intergenic LTR42|LTR|ERVL -118087 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 28531 chr8 121089467 121089574 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -277451 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 14892 chr2 71716 71820 + 0 NA Intergenic Intergenic -25180 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 20324 chr3 143085064 143085168 + 0 NA Intergenic MER54A|LTR|ERVL -34660 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 28808 chr8 143334728 143334736 + 0 NA intron (NM_001258447, intron 1 of 13) CpG 159 NM_052963 116447 Hs.528574 NM_052963 ENSG00000184428 TOP1MT - topoisomerase (DNA) I, mitochondrial protein-coding 4154 chr10 97412987 97413102 + 0 NA Intergenic L2c|LINE|L2 -11674 NM_001145114 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 29305 chr9 77456948 77457052 + 0 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 9351 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 4407 chr10 114633423 114633527 + 0 NA intron (NM_001322885, intron 1 of 20) intron (NM_001322885, intron 1 of 20) 24824 NM_002313 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 300 chr1 20232776 20232921 + 0 NA Intergenic MER11A|LTR|ERVK -46362 NR_110078 101928017 Hs.550803 NR_110078 ENSG00000225986 UBXN10-AS1 - UBXN10 antisense RNA 1 ncRNA 4756 chr11 6926323 6926427 + 0 NA promoter-TSS (NM_013250) promoter-TSS (NM_013250) -48 NM_013250 7762 Hs.523457 NM_013250 ENSG00000149054 ZNF215 BAZ-2|BAZ2|ZKSCAN11|ZSCAN43 zinc finger protein 215 protein-coding 14682 chr19 49301376 49301499 + 0 NA intron (NM_014037, intron 7 of 11) intron (NM_014037, intron 7 of 11) 7431 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 16280 chr2 127526485 127526588 + 0 NA promoter-TSS (NM_017969) promoter-TSS (NM_017969) -25 NM_017969 55677 Hs.469879 NM_017969 ENSG00000163166 IWS1 - IWS1, SUPT6H interacting protein protein-coding 26273 chr7 50962982 50963126 + 0 NA Intergenic Intergenic -169592 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 17220 chr2 227407780 227407879 + 0 NA Intergenic Intergenic -28523 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 4419 chr10 116670278 116670304 + 0 NA promoter-TSS (NM_144661) promoter-TSS (NM_144661) -19 NM_001330142 143379 Hs.121347 NM_144661 ENSG00000165863 C10orf82 - chromosome 10 open reading frame 82 protein-coding 27855 chr8 54629489 54629591 + 0 NA exon (NM_006269, exon 4 of 4) exon (NM_006269, exon 4 of 4) 13473 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1, axonemal microtubule associated protein-coding 3654 chr10 48254201 48254305 + 0 NA intron (NM_001018071, intron 1 of 28) intron (NM_001018071, intron 1 of 28) -2496 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 6330 chr11 129061573 129061703 + 0 NA intron (NM_001142685, intron 9 of 21) MER44B|DNA|TcMar-Tigger -37445 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 9005 chr14 52369394 52369498 + 0 NA Intergenic Intergenic 55148 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 11108 chr16 20910860 20911006 + 0 NA intron (NR_126516, intron 2 of 3) intron (NR_126516, intron 2 of 3) 9829 NM_001302835 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 19981 chr3 119206842 119206885 + 0 NA Intergenic (CAGCCC)n|Simple_repeat|Simple_repeat -19623 NR_046574 100874201 Hs.721307 NR_046574 ENSG00000240254 B4GALT4-AS1 - B4GALT4 antisense RNA 1 ncRNA 28125 chr8 85463937 85464046 + 0 NA promoter-TSS (NM_001293675) promoter-TSS (NM_001293675) 89 NM_001293675 760 Hs.155097 NM_000067 ENSG00000104267 CA2 CA-II|CAC|CAII|Car2|HEL-76|HEL-S-282 carbonic anhydrase 2 protein-coding 17613 chr20 11716308 11716412 + 0 NA Intergenic LTR16A1|LTR|ERVL 154355 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 1407 chr1 100351590 100351694 + 0 NA promoter-TSS (NM_033313) promoter-TSS (NM_033313) -825 NM_003672 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|cdc14|hCDC14 cell division cycle 14A protein-coding 17848 chr20 31678632 31678780 + 0 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) 40818 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 496 chr1 29202869 29203027 + 0 NA intron (NM_016011, intron 5 of 9) intron (NM_016011, intron 5 of 9) -20823 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 3946 chr10 77582907 77582979 + 0 NA intron (NM_001322832, intron 1 of 27) intron (NM_001322832, intron 1 of 27) 54876 NM_001322837 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 12332 chr17 32609283 32609387 + 0 NA intron (NM_001303279, intron 20 of 21) intron (NM_001303279, intron 20 of 21) 122248 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 31059 chrX 130401863 130401967 + 0 NA promoter-TSS (NM_016024) promoter-TSS (NM_016024) -54 NM_016024 51634 Hs.740515 NM_016024 ENSG00000134597 RBMX2 CGI-79|Snu17 RNA binding motif protein, X-linked 2 protein-coding 2829 chr1 225508630 225508771 + 0 NA intron (NM_018212, intron 10 of 13) intron (NM_018212, intron 10 of 13) -79845 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 24881 chr6 85575423 85575468 + 0 NA intron (NM_001304479, intron 1 of 28) Tigger6a|DNA|TcMar-Tigger 18711 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 14526 chr19 44626106 44626228 + 0 NA intron (NM_001205280, intron 2 of 4) intron (NM_001205280, intron 2 of 4) 12537 NM_001205280 147710 Hs.512509 NM_001205280 ENSG00000216588 IGSF23 - immunoglobulin superfamily member 23 protein-coding 605 chr1 35031934 35031968 + 0 NA promoter-TSS (NM_007167) promoter-TSS (NM_007167) 17 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 7738 chr12 119974381 119974485 + 0 NA Intergenic Intergenic -15411 NM_207311 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 9523 chr14 89000670 89000774 + 0 NA Intergenic Intergenic 176569 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 25453 chr6 162727696 162727816 + 0 NA promoter-TSS (NM_013988) promoter-TSS (NM_013988) 46 NM_004562 5071 Hs.132954 NM_004562 ENSG00000185345 PARK2 AR-JP|LPRS2|PDJ|PRKN parkin RBR E3 ubiquitin protein ligase protein-coding 1699 chr1 151058816 151058872 + 0 NA promoter-TSS (NM_006818) promoter-TSS (NM_006818) 805 NM_020239 56882 Hs.22065 NM_020239 ENSG00000197622 CDC42SE1 SCIP1|SPEC1 CDC42 small effector 1 protein-coding 4855 chr11 12802703 12802838 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 128348 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 10399 chr15 71471511 71471569 + 0 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -75662 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 1228 chr1 86542790 86542919 + 0 NA Intergenic Intergenic -4222 NR_024602 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 20764 chr3 181915680 181915771 + 0 NA Intergenic Intergenic -36639 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 694 chr1 40015331 40015457 + 0 NA Intergenic Intergenic -25189 NM_001105530 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN adenylate cyclase associated protein 1 protein-coding 9165 chr14 61837700 61837866 + 0 NA Intergenic Intergenic 75426 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 9812 chr15 30625710 30625864 + 0 NA promoter-TSS (NM_001039841) promoter-TSS (NM_001039841) -889 NM_001039841 89839 Hs.659621 NM_001039841 ENSG00000187951 ARHGAP11B B'-T|FAM7B1 Rho GTPase activating protein 11B protein-coding 14973 chr2 9703366 9703420 + 0 NA Intergenic Intergenic -72338 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 16929 chr2 201781102 201781227 + 0 NA promoter-TSS (NM_020919) promoter-TSS (NM_020919) 8 NM_001135745 57679 Hs.471096 NM_020919 ENSG00000003393 ALS2 ALS2CR6|ALSJ|IAHSP|PLSJ ALS2, alsin Rho guanine nucleotide exchange factor protein-coding 5371 chr11 62591638 62591680 + 0 NA promoter-TSS (NM_022830) promoter-TSS (NM_022830) -22 NM_022830 64852 Hs.728983 NM_022830 ENSG00000149016 TUT1 PAPD2|RBM21|STARPAP|TUTase|URLC6 terminal uridylyl transferase 1, U6 snRNA-specific protein-coding 14737 chr19 51339741 51339887 + 0 NA intron (NM_001163922, intron 4 of 9) intron (NM_001163922, intron 4 of 9) 2310 NM_001163922 147645 Hs.293236 NM_001163922 ENSG00000186806 VSIG10L - V-set and immunoglobulin domain containing 10 like protein-coding 4444 chr10 118054520 118054699 + 0 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -7725 NM_001330167 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 2244 chr1 186375382 186375486 + 0 NA promoter-TSS (NM_017847) promoter-TSS (NM_017847) -109 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 3788 chr10 65861362 65861448 + 0 NA Intergenic LTR8B|LTR|ERV1 289980 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 24270 chr6 28080850 28080944 + 0 NA 5' UTR (NM_003447, exon 1 of 4) 5' UTR (NM_003447, exon 1 of 4) 193 NM_003447 7718 Hs.55481 NM_003447 ENSG00000197279 ZNF165 CT53|LD65|ZSCAN7 zinc finger protein 165 protein-coding 9503 chr14 87878030 87878134 + 0 NA Intergenic Intergenic 115189 NM_001201401 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 17112 chr2 218980048 218980152 + 0 NA TTS (NM_017521) TTS (NM_017521) 3816 NR_024385 151300 Hs.420716 NR_015390 LINC00608 - long intergenic non-protein coding RNA 608 ncRNA 7201 chr12 62725036 62725182 + 0 NA intron (NM_020700, intron 5 of 9) Kanga1b|DNA|TcMar-Tc2 121423 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 19398 chr3 41137903 41138007 + 0 NA Intergenic LTR16A2|LTR|ERVL -61469 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 24623 chr6 45608567 45608641 + 0 NA Intergenic Intergenic 186027 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 30200 chr9 128818249 128818314 + 0 NA promoter-TSS (NM_004435) promoter-TSS (NM_004435) -219 NM_004435 2021 Hs.745161 NM_004435 ENSG00000167136 ENDOG - endonuclease G protein-coding 29664 chr9 98154842 98154946 + 0 NA intron (NM_003389, intron 2 of 11) L1ME3B|LINE|L1 17998 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 24859 chr6 83193224 83193328 + 0 NA promoter-TSS (NM_001199919) promoter-TSS (NM_001199919) 17 NM_001199919 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 17333 chr2 236748502 236748566 + 0 NA Intergenic Intergenic 178797 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 26391 chr7 73578594 73578743 + 0 NA promoter-TSS (NM_012453) promoter-TSS (NM_012453) 15 NM_012453 26608 Hs.647044 NM_012453 ENSG00000106638 TBL2 WBSCR13|WS-betaTRP transducin beta like 2 protein-coding 11636 chr16 74999978 75000082 + 0 NA exon (NM_032268, exon 1 of 5) exon (NM_032268, exon 1 of 5) 1013 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 30239 chr9 129726766 129726810 + 0 NA Intergenic Intergenic -8082 NR_132102 101929437 Hs.112596 NR_132102 ENSG00000236024 PRRX2-AS1 - PRRX2 antisense RNA 1 ncRNA 23045 chr5 114449995 114450133 + 0 NA intron (NR_130785, intron 11 of 12) intron (NR_130785, intron 11 of 12) 16534 NR_103458 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 18301 chr20 56787787 56787864 + 0 NA Intergenic Intergenic 158523 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 18346 chr20 59222694 59222768 + 0 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 31711 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174|dJ492J12.1 zinc finger protein 831 protein-coding 7650 chr12 110468196 110468334 + 0 NA promoter-TSS (NM_001164373) promoter-TSS (NM_001164373) 19 NM_001164373 51184 Hs.634680 NM_016301 ENSG00000111231 GPN3 ATPBD1C GPN-loop GTPase 3 protein-coding 22182 chr5 6765724 6765828 + 0 NA Intergenic Intergenic 19788 NM_001171806 11044 Hs.481542 NM_006999 ENSG00000112941 PAPD7 LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 poly(A) RNA polymerase D7, non-canonical protein-coding 19598 chr3 58433574 58433603 + 0 NA intron (NM_001315536, intron 1 of 8) CpG 251 NR_033384 5162 Hs.161357 NM_000925 ENSG00000168291 PDHB PDHBD|PDHE1-B|PHE1B pyruvate dehydrogenase (lipoamide) beta protein-coding 14063 chr19 10096031 10096171 + 0 NA exon (NM_031917, exon 2 of 6) exon (NM_031917, exon 2 of 6) 6556 NM_001321411 83854 Hs.712850 NM_031917 ENSG00000130812 ANGPTL6 AGF|ARP5 angiopoietin like 6 protein-coding 14207 chr19 15836804 15836818 + 0 NA TTS (NR_015379) TTS (NR_015379) 7864 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36 urothelial cancer associated 1 (non-protein coding) ncRNA 3201 chr10 3924376 3924480 + 0 NA Intergenic Intergenic -66732 NR_106726 102464829 NR_106726 ENSG00000274809 MIR6078 hsa-mir-6078 microRNA 6078 ncRNA 8320 chr13 62021251 62021402 + 0 NA intron (NR_046995, intron 1 of 1) MLT1J1|LTR|ERVL-MaLR 8222 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 25908 chr7 26491452 26491549 + 0 NA intron (NR_015364, intron 1 of 4) intron (NR_015364, intron 1 of 4) 47325 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 18550 chr21 41704339 41704443 + 0 NA Intergenic Intergenic 11384 NR_027272 150135 Hs.350679 NM_152506 ENSG00000236384 LINC00479 C21orf129|PRED76 long intergenic non-protein coding RNA 479 ncRNA 6572 chr12 8697805 8697885 + 0 NA promoter-TSS (NM_001297776) promoter-TSS (NM_001297776) -55 NM_001297776 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 11694 chr16 79651613 79651698 + 0 NA Intergenic Intergenic -50930 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 28619 chr8 126580111 126580252 + 0 NA Intergenic Intergenic -21715 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 5303 chr11 59142686 59142870 + 0 NA promoter-TSS (NM_001142519) promoter-TSS (NM_001142519) 30 NR_110184 101927204 Hs.659259 NR_110184 ENSG00000245571 LOC101927204 - uncharacterized LOC101927204 ncRNA 30188 chr9 128552222 128552326 + 0 NA promoter-TSS (NM_001130438) promoter-TSS (NM_001130438) -284 NM_001130438 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 17667 chr20 15703261 15703443 + 0 NA intron (NM_001033087, intron 4 of 13) intron (NM_001033087, intron 4 of 13) 219962 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 14952 chr2 9001310 9001414 + 0 NA intron (NR_135603, intron 1 of 13) Tigger3b|DNA|TcMar-Tigger 2388 NM_001321266 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 29435 chr9 86099204 86099388 + 0 NA intron (NM_177937, intron 1 of 9) CpG 299 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 7306 chr12 77940116 77940201 + 0 NA intron (NM_014903, intron 1 of 38) intron (NM_014903, intron 1 of 38) 108869 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 9432 chr14 77321298 77321428 + 0 NA promoter-TSS (NM_013382) promoter-TSS (NM_013382) 476 NM_145871 2954 Hs.655292 NM_001513 ENSG00000100577 GSTZ1 GSTZ1-1|MAAI|MAI glutathione S-transferase zeta 1 protein-coding 20456 chr3 155019051 155019130 + 0 NA Intergenic Intergenic -60557 NM_000902 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 25667 chr7 7911472 7911606 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR -57204 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 23903 chr6 3160353 3160421 + 0 NA Intergenic Intergenic -2838 NM_001310315 7280 Hs.654543 NM_001069 ENSG00000137267 TUBB2A CDCBM5|TUBB|TUBB2 tubulin beta 2A class IIa protein-coding 19063 chr22 50675131 50675222 + 0 NA exon (NM_033517, exon 2 of 22) exon (NM_033517, exon 2 of 22) 534 NM_033517 85358 Hs.149035 NM_033517 ENSG00000251322 SHANK3 DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2 SH3 and multiple ankyrin repeat domains 3 protein-coding 3621 chr10 43455528 43455632 + 0 NA intron (NR_026693, intron 1 of 3) CpG 18454 NR_026693 642819 Hs.719657 NR_026693 ZNF487 KRBO1|ZNF487P zinc finger protein 487 pseudo 8278 chr13 50617448 50617552 + 0 NA Intergenic Intergenic -90051 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000229323 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 10257 chr15 63189355 63189492 + 0 NA promoter-TSS (NM_016530) promoter-TSS (NM_016530) -106 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 2726 chr1 219771204 219771308 + 0 NA Intergenic Intergenic 157395 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 11454 chr16 62038324 62038428 + 0 NA Intergenic Intergenic -1541 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 12446 chr17 39980675 39980690 + 0 NA promoter-TSS (NM_002809) promoter-TSS (NM_002809) -86 NM_002809 5709 Hs.12970 NM_002809 ENSG00000108344 PSMD3 P58|RPN3|S3|TSTA2 proteasome 26S subunit, non-ATPase 3 protein-coding 14086 chr19 10695855 10695950 + 0 NA Intergenic Intergenic -5534 NM_031209 81890 Hs.631638 NM_031209 ENSG00000213339 QTRT1 FP3235|TGT|TGUT queuine tRNA-ribosyltransferase catalytic subunit 1 protein-coding 15397 chr2 39437207 39437431 + 0 NA promoter-TSS (NM_001270425) promoter-TSS (NM_001270425) -7 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 441 chr1 26990713 26990842 + 0 NA Intergenic L2a|LINE|L2 -2927 NM_001013642 388610 Hs.355747 NM_001013642 ENSG00000253368 TRNP1 C1orf225|TNRP TMF1-regulated nuclear protein 1 protein-coding 9442 chr14 78005405 78005593 + 0 NA Intergenic Charlie29a|DNA|hAT-Charlie -164874 NM_001330195 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 6182 chr11 119030849 119030971 + 0 NA promoter-TSS (NM_001164277) promoter-TSS (NM_001164277) -4 NM_001164279 2542 Hs.719203 NM_001467 ENSG00000137700 SLC37A4 G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|TRG-19|TRG19 solute carrier family 37 member 4 protein-coding 7430 chr12 93087343 93087447 + 0 NA intron (NR_040096, intron 3 of 4) MER110|LTR|ERV1 -86971 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LOC102724933 - uncharacterized LOC102724933 ncRNA 4041 chr10 88851779 88851920 + 0 NA 5' UTR (NM_144590, exon 1 of 6) 5' UTR (NM_144590, exon 1 of 6) 126 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 7047 chr12 52949833 52949961 + 0 NA promoter-TSS (NM_001256293) promoter-TSS (NM_001256293) -31 NM_001256293 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 30485 chrX 11060051 11060155 + 0 NA Intergenic Intergenic -51183 NM_001122608 3052 Hs.211571 NM_005333 ENSG00000004961 HCCS CCHL|LSDMCA1|MCOPS7|MLS holocytochrome c synthase protein-coding 24321 chr6 30496678 30496711 + 0 NA Intergenic Intergenic 7288 NM_005516 3133 Hs.650174 NM_005516 ENSG00000204592 HLA-E HLA-6.2|QA1 major histocompatibility complex, class I, E protein-coding 22353 chr5 33850164 33850268 + 0 NA intron (NM_001324512, intron 2 of 21) intron (NM_001324512, intron 2 of 21) 41976 NM_001324512 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 25065 chr6 118651022 118651172 + 0 NA intron (NM_001178035, intron 2 of 13) CpG 760 NM_001042475 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 24040 chr6 11414660 11414803 + 0 NA Intergenic MER57D|LTR|ERV1 -32383 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 15382 chr2 38447379 38447483 + 0 NA Intergenic Intergenic 68309 NR_110259 101929596 Hs.537341 NR_110259 LOC101929596 - uncharacterized LOC101929596 ncRNA 4257 chr10 102502130 102502236 + 0 NA intron (NM_005736, intron 1 of 10) intron (NM_005736, intron 1 of 10) 572 NM_005736 10121 Hs.153961 NM_005736 ENSG00000138107 ACTR1A ARP1|Arp1A|CTRN1 ARP1 actin-related protein 1 homolog A, centractin alpha protein-coding 11744 chr16 82456795 82456899 + 0 NA Intergenic Intergenic -169947 NM_001220490 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 21887 chr4 147821175 147821266 + 0 NA intron (NM_024605, intron 1 of 22) MLT1H|LTR|ERVL-MaLR 38625 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 22747 chr5 76739184 76739330 + 0 NA Intergenic Intergenic 23214 NM_001992 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 19584 chr3 57692619 57692765 + 0 NA promoter-TSS (NR_135550) promoter-TSS (NR_135550) 397 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 3689 chr10 52682891 52682995 + 0 NA Intergenic Intergenic 88757 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 11239 chr16 30741573 30741725 + 0 NA intron (NM_001256829, intron 1 of 2) intron (NM_001256829, intron 1 of 2) 1458 NM_001256829 100862671 Hs.667372 NM_001256829 ENSG00000281991 TMEM265 IFITMD8 transmembrane protein 265 protein-coding 23662 chr5 167294942 167295111 + 0 NA intron (NM_001122679, intron 1 of 28) intron (NM_001122679, intron 1 of 28) 10188 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 19743 chr3 98962606 98962710 + 0 NA Intergenic Intergenic -60969 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 13339 chr18 24076276 24076404 + 0 NA intron (NM_001135993, intron 4 of 13) intron (NM_001135993, intron 4 of 13) -37013 NM_001292030 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 13206 chr18 812321 812475 + 0 NA promoter-TSS (NM_005433) promoter-TSS (NM_005433) -72 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 22042 chr4 176320510 176320621 + 0 NA intron (NM_021928, intron 1 of 4) CpG 626 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 5391 chr11 62839528 62839683 + 0 NA promoter-TSS (NM_001307977) promoter-TSS (NM_001307977) 54 NM_001307977 54663 Hs.654620 NM_018093 ENSG00000133316 WDR74 - WD repeat domain 74 protein-coding 18295 chr20 56630154 56630264 + 0 NA intron (NM_003222, intron 1 of 6) CpG-17886 907 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 27650 chr8 30723047 30723068 + 0 NA intron (NM_000637, intron 1 of 12) intron (NM_000637, intron 1 of 12) 4912 NM_001195104 2936 Hs.271510 NM_000637 ENSG00000104687 GSR HEL-75|HEL-S-122m glutathione-disulfide reductase protein-coding 25475 chr6 166691306 166691410 + 0 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -64081 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 7224 chr12 64610231 64610267 + 0 NA promoter-TSS (NM_178169) promoter-TSS (NM_178169) -264 NR_040718 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 25907 chr7 26346961 26347065 + 0 NA intron (NM_013322, intron 2 of 6) intron (NM_013322, intron 2 of 6) -13871 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 4300 chr10 104269035 104269167 + 0 NA promoter-TSS (NR_039702) promoter-TSS (NR_039702) 228 NM_001191013 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 27313 chr8 1745518 1745672 + 0 NA Intergenic Intergenic 17739 NR_134302 101927752 Hs.356690 NR_134302 ENSG00000253982 LOC101927752 - uncharacterized LOC101927752 ncRNA 23890 chr6 2985983 2986130 + 0 NA Intergenic Intergenic -1911 NR_026856 401232 Hs.720158 NM_207495 LINC01011 - long intergenic non-protein coding RNA 1011 ncRNA 22422 chr5 40391890 40391994 + 0 NA Intergenic Intergenic -287988 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 24260 chr6 27754180 27754284 + 0 NA Intergenic Intergenic -7512 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 28623 chr8 126913036 126913140 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR -100066 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 2275 chr1 193059399 193059586 + 0 NA promoter-TSS (NM_015984) promoter-TSS (NM_015984) 70 NM_001331020 6738 Hs.288178 NM_004600 ENSG00000116747 TROVE2 RO60|RORNP|SSA2 TROVE domain family member 2 protein-coding 13103 chr17 80415121 80415216 + 0 NA promoter-TSS (NM_001164638) promoter-TSS (NM_001164638) 0 NR_029376 100294362 Hs.657519 NR_029376 ENSG00000263069 LOC100294362 - uncharacterized LOC100294362 ncRNA 21416 chr4 67725241 67725345 + 0 NA Intergenic Intergenic 24015 NR_015439 550112 Hs.479879 NR_015439 ENSG00000248049 UBA6-AS1 - UBA6 antisense RNA 1 (head to head) ncRNA 28260 chr8 97775652 97775756 + 0 NA 5' UTR (NM_018407, exon 1 of 7) 5' UTR (NM_018407, exon 1 of 7) 123 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 25410 chr6 158067630 158067734 + 0 NA intron (NM_001178088, intron 11 of 25) intron (NM_001178088, intron 11 of 25) 50634 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 23951 chr6 6750125 6750229 + 0 NA Intergenic Intergenic -127351 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 17510 chr20 4687267 4687371 + 0 NA intron (NM_001080123, intron 1 of 1) intron (NM_001080123, intron 1 of 1) 808 NM_001080123 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 26047 chr7 35801694 35801943 + 0 NA intron (NM_001788, intron 1 of 12) CpG 832 NM_001011553 989 Hs.191346 NM_001788 ENSG00000122545 SEPT7 CDC10|CDC3|NBLA02942|SEPT7A septin 7 protein-coding 30118 chr9 125746610 125746759 + 0 NA promoter-TSS (NR_122032) promoter-TSS (NR_122032) -654 NR_024123 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 15181 chr2 24793316 24793420 + 0 NA promoter-TSS (NM_001013663) promoter-TSS (NM_001013663) 14 NM_001013663 391356 Hs.406607 NM_001013663 ENSG00000184924 PTRHD1 C2orf79 peptidyl-tRNA hydrolase domain containing 1 protein-coding 20148 chr3 130761101 130761214 + 0 NA Intergenic Intergenic -14305 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 18755 chr22 29072762 29072916 + 0 NA promoter-TSS (NM_001039570) promoter-TSS (NM_001039570) -239 NM_032045 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 5925 chr11 96307019 96307165 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -34346 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 10060 chr15 49620910 49621061 + 0 NA promoter-TSS (NM_152647) promoter-TSS (NM_152647) -44 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 3480 chr10 27483367 27483411 + 0 NA Intergenic Intergenic -20785 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 10505 chr15 78751159 78751285 + 0 NA promoter-TSS (NR_036495) promoter-TSS (NR_036495) -815 NR_036495 646938 Hs.449783 NR_036495 ENSG00000238166 LOC646938 - TBC1 domain family member 2B pseudogene pseudo 10869 chr16 1826820 1826966 + 0 NA promoter-TSS (NM_031208) promoter-TSS (NM_031208) 301 NM_001040427 3029 Hs.157394 NM_005326 ENSG00000063854 HAGH GLO2|GLX2|GLXII|HAGH1 hydroxyacylglutathione hydrolase protein-coding 13885 chr19 2061585 2061707 + 0 NA Intergenic CpG -10402 NM_017572 2872 Hs.515032 NM_017572 ENSG00000099875 MKNK2 GPRK7|MNK2 MAP kinase interacting serine/threonine kinase 2 protein-coding 10379 chr15 70494940 70495080 + 0 NA Intergenic Intergenic 91596 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LOC101929151 - uncharacterized LOC101929151 ncRNA 19691 chr3 86990552 86990730 + 0 NA exon (NM_001320493, exon 1 of 4) exon (NM_001320493, exon 1 of 4) 482 NM_001320493 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 8914 chr14 38809014 38809126 + 0 NA intron (NR_039982, intron 4 of 4) L1PB1|LINE|L1 -73526 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 664 chr1 38308889 38308993 + 0 NA Intergenic LTR16D|LTR|ERVL -94174 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 13370 chr18 28115332 28115436 + 0 NA intron (NM_001792, intron 2 of 15) intron (NM_001792, intron 2 of 15) 62062 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 24832 chr6 80004527 80004631 + 0 NA promoter-TSS (NM_003318) promoter-TSS (NM_003318) -26 NM_003318 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 1790 chr1 154484598 154484608 + 0 NA intron (NR_135169, intron 5 of 5) intron (NR_135169, intron 5 of 5) 17447 NR_135169 126669 Hs.591481 NM_001010846 ENSG00000169291 SHE - Src homology 2 domain containing E protein-coding 5639 chr11 73195337 73195468 + 0 NA Intergenic Intergenic -22896 NM_176072 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 19275 chr3 25783364 25783518 + 0 NA promoter-TSS (NM_001145293) promoter-TSS (NM_001145293) 57 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 29752 chr9 106403182 106403343 + 0 NA Intergenic MLT2F|LTR|ERVL -197666 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 28278 chr8 98845384 98845510 + 0 NA intron (NM_001256312, intron 3 of 12) L1M6|LINE|L1 -19766 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 2264 chr1 192401992 192402096 + 0 NA Intergenic Intergenic 85052 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G-protein signaling 21 protein-coding 19921 chr3 113947818 113947893 + 0 NA promoter-TSS (NM_001320466) promoter-TSS (NM_001320466) -46 NM_001320466 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 30268 chr9 130962724 130962871 + 0 NA Intergenic Intergenic -23729 NM_001145106 84929 Hs.133205 NM_032843 ENSG00000130720 FIBCD1 - fibrinogen C domain containing 1 protein-coding 28940 chr9 14747220 14747324 + 0 NA exon (NM_001177704, exon 10 of 14) exon (NM_001177704, exon 10 of 14) -24555 NM_005454 9350 Hs.248204 NM_005454 ENSG00000147869 CER1 DAND4 cerberus 1, DAN family BMP antagonist protein-coding 19991 chr3 119795321 119795425 + 0 NA intron (NM_022002, intron 1 of 8) intron (NM_022002, intron 1 of 8) 12663 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 12715 chr17 54993256 54993360 + 0 NA intron (NM_178509, intron 4 of 17) intron (NM_178509, intron 4 of 17) -24523 NR_135677 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P COX11, cytochrome c oxidase copper chaperone protein-coding 28943 chr9 15422666 15422798 + 0 NA promoter-TSS (NM_001039697) promoter-TSS (NM_001039697) -52 NM_001039697 6619 Hs.546299 NM_003084 ENSG00000164975 SNAPC3 PTFbeta|SNAP50 small nuclear RNA activating complex polypeptide 3 protein-coding 27657 chr8 32323445 32323544 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -117252 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 1420 chr1 101295361 101295465 + 0 NA Intergenic Intergenic -28424 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 25583 chr7 4641965 4642011 + 0 NA Intergenic CpG -40311 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 3437 chr10 24383825 24383984 + 0 NA intron (NM_001098500, intron 4 of 18) intron (NM_001098500, intron 4 of 18) -65529 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 28100 chr8 81286815 81286825 + 0 NA Intergenic L2a|LINE|L2 6337 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 24163 chr6 20117685 20117789 + 0 NA intron (NR_073465, intron 6 of 9) intron (NR_073465, intron 6 of 9) 94727 NR_073465 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 18558 chr21 42040741 42040845 + 0 NA Intergenic Intergenic 18524 NR_027273 150142 Hs.143833 NM_198078 ENSG00000237232 ZNF295-AS1 C21orf121|NCRNA00318|PRED87 ZNF295 antisense RNA 1 ncRNA 2502 chr1 206504173 206504277 + 0 NA Intergenic Intergenic -3305 NM_182664 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 28357 chr8 102863147 102863164 + 0 NA intron (NM_001301668, intron 1 of 11) CpG 1045 NM_001301668 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 126 chr1 9129498 9129616 + 0 NA promoter-TSS (NM_024980) promoter-TSS (NM_024980) -387 NM_024980 80045 Hs.632367 NM_024980 ENSG00000180758 GPR157 - G protein-coupled receptor 157 protein-coding 22740 chr5 75336967 75337095 + 0 NA promoter-TSS (NM_001130996) promoter-TSS (NM_001130996) -137 NM_000859 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 21372 chr4 54064513 54064636 + 0 NA promoter-TSS (NM_012110) promoter-TSS (NM_012110) 74 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 2875 chr1 227805779 227805924 + 0 NA Intergenic L1MEg|LINE|L1 -9866 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 protease, serine 38 protein-coding 1533 chr1 112955643 112955790 + 0 NA promoter-TSS (NR_103743) promoter-TSS (NR_103743) 347 NM_001166496 6566 Hs.75231 NM_003051 ENSG00000155380 SLC16A1 HHF7|MCT|MCT1|MCT1D solute carrier family 16 member 1 protein-coding 29571 chr9 93365493 93365592 + 0 NA Intergenic MIR3|SINE|MIR -19128 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 7979 chr13 24501045 24501149 + 0 NA intron (NM_006437, intron 3 of 33) intron (NM_006437, intron 3 of 33) 11713 NM_006437 143 Hs.744855 NM_006437 ENSG00000102699 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly(ADP-ribose) polymerase family member 4 protein-coding 22522 chr5 53331658 53331762 + 0 NA Intergenic Intergenic -148724 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 21087 chr3 197750565 197750669 + 0 NA promoter-TSS (NM_001145642) promoter-TSS (NM_001145642) 227 NR_027840 84248 Hs.277533 NM_032288 ENSG00000122068 FYTTD1 UIF forty-two-three domain containing 1 protein-coding 651 chr1 37808159 37808295 + 0 NA promoter-TSS (NM_024640) promoter-TSS (NM_024640) -34 NM_024640 79693 Hs.301564 NM_024640 ENSG00000196449 YRDC DRIP3|IRIP|SUA5 yrdC N6-threonylcarbamoyltransferase domain containing protein-coding 176 chr1 12019388 12019492 + 0 NA 5' UTR (NM_021933, exon 1 of 10) 5' UTR (NM_021933, exon 1 of 10) 198 NM_021933 60672 Hs.8595 NM_021933 ENSG00000116691 MIIP IIP45 migration and invasion inhibitory protein protein-coding 21442 chr4 73704611 73704736 + 0 NA Intergenic Intergenic -35833 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 4660 chr11 506804 506908 + 0 NA promoter-TSS (NM_002939) promoter-TSS (NM_002939) -35 NM_203384 6050 Hs.530687 NM_002939 ENSG00000023191 RNH1 RAI|RNH ribonuclease/angiogenin inhibitor 1 protein-coding 27923 chr8 61060987 61061113 + 0 NA Intergenic Intergenic -93302 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 15857 chr2 75789054 75789158 + 0 NA Intergenic Intergenic -78121 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 256 chr1 17298205 17298228 + 0 NA Intergenic Intergenic -9979 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 15358 chr2 37196443 37196587 + 0 NA promoter-TSS (NM_001322376) promoter-TSS (NM_001322376) 54 NM_001322375 100505876 Hs.666958 NM_001322373 ENSG00000218739 CEBPZOS CEBPZ-AS1 CEBPZ opposite strand protein-coding 27194 chr7 148966884 148967047 + 0 NA Intergenic Intergenic 3650 NR_004393 6086 NR_004393 ENSG00000252316 RNY4 HY4|Y4 RNA, Ro-associated Y4 ncRNA 18015 chr20 40707070 40707174 + 0 NA Intergenic Intergenic -17882 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 10264 chr15 64004768 64004872 + 0 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 41502 NM_014326 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 13486 chr18 45166521 45166672 + 0 NA Intergenic Intergenic -46386 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 30002 chr9 118522175 118522279 + 0 NA Intergenic Intergenic 818052 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 21901 chr4 151331743 151331828 + 0 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 54612 NM_183375 345062 Hs.651266 NM_183375 ENSG00000189099 PRSS48 ESSPL protease, serine 48 protein-coding 28931 chr9 14030427 14030577 + 0 NA Intergenic Intergenic 102531 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 28509 chr8 119177328 119177455 + 0 NA Intergenic Intergenic -30980 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding 27686 chr8 37736466 37736498 + 0 NA promoter-TSS (NM_001003790) promoter-TSS (NM_001003790) -97 NM_007175 11160 Hs.705490 NM_007175 ENSG00000147475 ERLIN2 C8orf2|Erlin-2|NET32|SPFH2|SPG18 ER lipid raft associated 2 protein-coding 4545 chr10 123109586 123109735 + 0 NA Intergenic MamRep137|DNA|TcMar-Tigger -26391 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 4344 chr10 110497730 110497892 + 0 NA promoter-TSS (NM_004419) promoter-TSS (NM_004419) -56 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 21025 chr3 194715566 194715740 + 0 NA intron (NR_037891, intron 1 of 3) intron (NR_037891, intron 1 of 3) 7232 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 17778 chr20 23349927 23350063 + 0 NA promoter-TSS (NM_013248) promoter-TSS (NM_013248) -741 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 5273 chr11 57568199 57568303 + 0 NA promoter-TSS (NM_004223) promoter-TSS (NM_004223) 79 NM_198183 9246 Hs.425777 NM_004223 ENSG00000156587 UBE2L6 RIG-B|UBCH8 ubiquitin conjugating enzyme E2 L6 protein-coding 17229 chr2 227884596 227884653 + 0 NA intron (NM_001330004, intron 2 of 13) L1MDb|LINE|L1 13248 NR_138459 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 1221 chr1 85612013 85612158 + 0 NA Intergenic Intergenic 31324 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CYR61 CCN1|GIG1|IGFBP10 cysteine rich angiogenic inducer 61 protein-coding 6135 chr11 117090183 117090315 + 0 NA intron (NM_025164, intron 1 of 23) intron (NM_025164, intron 1 of 23) 8166 NM_025164 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SIK-3 SIK family kinase 3 protein-coding 1757 chr1 153123221 153123279 + 0 NA Intergenic L1PBa|LINE|L1 -9735 NM_001014450 6705 Hs.490252 NM_001014450 ENSG00000244094 SPRR2F - small proline rich protein 2F protein-coding 918 chr1 55245866 55246028 + 0 NA Intergenic AluJr|SINE|Alu 20306 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 4193 chr10 99620666 99620680 + 0 NA promoter-TSS (NM_031212) promoter-TSS (NM_031212) -209 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 26314 chr7 55415277 55415381 + 0 NA intron (NM_018697, intron 6 of 8) intron (NM_018697, intron 6 of 8) 49881 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 19149 chr3 10115512 10115665 + 0 NA promoter-TSS (NM_018462) promoter-TSS (NM_018462) -61 NM_018462 55845 Hs.649307 NM_018462 ENSG00000254999 BRK1 C3orf10|HSPC300|MDS027|hHBrk1 BRICK1, SCAR/WAVE actin nucleating complex subunit protein-coding 23408 chr5 142822133 142822176 + 0 NA intron (NM_015071, intron 1 of 22) intron (NM_015071, intron 1 of 22) 46756 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 11805 chr16 86772887 86772919 + 0 NA Intergenic Intergenic 50812 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LOC102724344 - uncharacterized LOC102724344 ncRNA 22859 chr5 90021266 90021402 + 0 NA Intergenic Intergenic -4614 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 18186 chr20 50460849 50460988 + 0 NA Intergenic Intergenic -49403 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 27321 chr8 2232198 2232237 + 0 NA Intergenic Intergenic 155628 NR_106983 102465695 NR_106983 ENSG00000273593 MIR7160 hsa-mir-7160 microRNA 7160 ncRNA 7326 chr12 80442940 80443068 + 0 NA Intergenic Intergenic -1342 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase, receptor type Q protein-coding 7539 chr12 102120166 102120263 + 0 NA promoter-TSS (NM_001319993) promoter-TSS (NM_001319993) 43 NM_017915 55010 Hs.330663 NM_017915 ENSG00000185480 PARPBP AROM|C12orf48|PARI PARP1 binding protein protein-coding 25184 chr6 134911690 134911794 + 0 NA Intergenic Intergenic 38380 NM_170771 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 18546 chr21 39349333 39349437 + 0 NA promoter-TSS (NM_004965) promoter-TSS (NM_004965) -264 NM_004965 3150 Hs.356285 NM_004965 ENSG00000205581 HMGN1 HMG14 high mobility group nucleosome binding domain 1 protein-coding 6960 chr12 48995530 48995634 + 0 NA 3' UTR (NM_015086, exon 2 of 2) 3' UTR (NM_015086, exon 2 of 2) 3723 NM_015086 23109 Hs.591044 NM_015086 ENSG00000181418 DDN - dendrin protein-coding 12844 chr17 64145778 64145929 + 0 NA promoter-TSS (NR_004380) promoter-TSS (NR_004380) -117 NR_132278 105376843 Hs.405444 NR_132278 ENSG00000266402 SNHG25 - small nucleolar RNA host gene 25 ncRNA 1598 chr1 118485907 118486011 + 0 NA Intergenic Intergenic -300734 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 16728 chr2 177763842 177763946 + 0 NA intron (NM_001077358, intron 9 of 18) MER91A|DNA|hAT-Tip100 90572 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 3453 chr10 24912334 24912438 + 0 NA intron (NM_020200, intron 3 of 8) L1ME1|LINE|L1 40258 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 28506 chr8 119121791 119121895 + 0 NA Intergenic Intergenic -53061 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 17253 chr2 230691182 230691297 + 0 NA non-coding (NR_040038, exon 4 of 4) non-coding (NR_040038, exon 4 of 4) 9290 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 20605 chr3 169147409 169147513 + 0 NA promoter-TSS (NM_001105078) promoter-TSS (NM_001105078) 273 NM_001164000 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 1491 chr1 110259957 110260061 + 0 NA Intergenic Intergenic 49295 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 27677 chr8 35861083 35861235 + 0 NA Intergenic Intergenic -150839 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 25031 chr6 113120817 113120921 + 0 NA Intergenic Intergenic 529206 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 22471 chr5 43484328 43484425 + 0 NA promoter-TSS (NM_022483) promoter-TSS (NM_022483) -486 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 1804 chr1 155117745 155117827 + 0 NA Intergenic Intergenic -10087 NM_004428 1942 Hs.516664 NM_004428 ENSG00000169242 EFNA1 B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4 ephrin A1 protein-coding 22518 chr5 53109725 53109896 + 0 NA promoter-TSS (NM_176806) promoter-TSS (NM_176806) -32 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 632 chr1 36373992 36374045 + 0 NA intron (NM_032017, intron 1 of 11) intron (NM_032017, intron 1 of 11) 11909 NM_001282547 83931 Hs.471768 NM_032017 ENSG00000196182 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 2357 chr1 201114254 201114346 + 0 NA 3' UTR (NM_001270601, exon 1 of 1) 3' UTR (NM_001270601, exon 1 of 1) 1072 NM_001270601 647219 Hs.143949 NM_001270601 ENSG00000232237 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 14078 chr19 10502722 10502846 + 0 NA promoter-TSS (NM_012289) promoter-TSS (NM_012289) 21 NM_012289 9817 Hs.465870 NM_012289 ENSG00000079999 KEAP1 INrf2|KLHL19 kelch like ECH associated protein 1 protein-coding 14214 chr19 16197728 16197830 + 0 NA promoter-TSS (NM_001130524) promoter-TSS (NM_001130524) -75 NM_001130524 8907 Hs.71040 NM_032493 ENSG00000072958 AP1M1 AP47|CLAPM2|CLTNM|MU-1A adaptor related protein complex 1 mu 1 subunit protein-coding 9129 chr14 60649620 60649633 + 0 NA promoter-TSS (NM_005982) promoter-TSS (NM_005982) -189 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 11770 chr16 84532449 84532553 + 0 NA Intergenic Intergenic -27819 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 TLDC1 KIAA1609 TBC/LysM-associated domain containing 1 protein-coding 21055 chr3 196503705 196503889 + 0 NA promoter-TSS (NM_152617) promoter-TSS (NM_152617) -29 NM_152617 165918 Hs.250648 NM_152617 ENSG00000163961 RNF168 hRNF168 ring finger protein 168 protein-coding 16874 chr2 196926701 196926847 + 0 NA promoter-TSS (NM_024989) promoter-TSS (NM_024989) -43 NM_001321099 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 21766 chr4 122798292 122798396 + 0 NA Intergenic Intergenic -28364 NM_002006 2247 Hs.284244 NM_002006 ENSG00000138685 FGF2 BFGF|FGF-2|FGFB|HBGF-2 fibroblast growth factor 2 protein-coding 4954 chr11 18144366 18144470 + 0 NA Intergenic L2|LINE|L2 23463 NM_054031 117195 Hs.380177 NM_054031 ENSG00000179826 MRGPRX3 GPCR|MRGX3|SNSR1|SNSR2 MAS related GPR family member X3 protein-coding 23156 chr5 127785795 127785899 + 0 NA intron (NM_001317938, intron 3 of 6) intron (NM_001317938, intron 3 of 6) 82458 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 2645 chr1 212721598 212721691 + 0 NA Intergenic Plat_L3|LINE|CR1 -21659 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 1519 chr1 112369818 112369948 + 0 NA Intergenic Intergenic -26295 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 24641 chr6 47135762 47135915 + 0 NA Intergenic MIRb|SINE|MIR -93475 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 3173 chr10 1049028 1049132 + 0 NA promoter-TSS (NM_001317956) promoter-TSS (NM_001317956) -197 NM_001317957 3422 Hs.283652 NM_004508 ENSG00000067064 IDI1 IPP1|IPPI1 isopentenyl-diphosphate delta isomerase 1 protein-coding 2197 chr1 182839136 182839280 + 0 NA promoter-TSS (NR_033302) promoter-TSS (NR_033302) -96 NM_001357 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding 11534 chr16 68645324 68645329 + 0 NA 5' UTR (NM_001317196, exon 1 of 15) 5' UTR (NM_001317196, exon 1 of 15) 490 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 14615 chr19 47273597 47273701 + 0 NA promoter-TSS (NR_037675) promoter-TSS (NR_037675) -753 NR_037675 255783 Hs.128690 NM_178511 ENSG00000257704 INAFM1 PRR24 InaF motif containing 1 protein-coding 9348 chr14 73537828 73537965 + 0 NA intron (NM_001037161, intron 1 of 2) CpG 672 NM_001037161 641371 Hs.446685 NM_001037161 ENSG00000184227 ACOT1 ACH2|CTE-1|LACH2 acyl-CoA thioesterase 1 protein-coding 11384 chr16 55508952 55509137 + 0 NA promoter-TSS (NM_017839) promoter-TSS (NM_017839) 43 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 24678 chr6 51644586 51644688 + 0 NA intron (NM_138694, intron 63 of 66) intron (NM_138694, intron 63 of 66) 22767 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 12559 chr17 44324794 44324991 + 0 NA promoter-TSS (NM_001321240) promoter-TSS (NM_001321240) -22 NM_001321240 51629 Hs.744880 NM_016016 ENSG00000013306 SLC25A39 CGI-69|CGI69 solute carrier family 25 member 39 protein-coding 21211 chr4 16196626 16196730 + 0 NA intron (NM_153365, intron 3 of 13) intron (NM_153365, intron 3 of 13) 29860 NM_153365 202018 Hs.479223 NM_153365 ENSG00000169762 TAPT1 CMVFR|OCLSBG transmembrane anterior posterior transformation 1 protein-coding 11016 chr16 11256245 11256260 + 0 NA promoter-TSS (NM_003745) promoter-TSS (NM_003745) -70 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 10865 chr16 1705785 1705889 + 0 NA promoter-TSS (NM_001040439) promoter-TSS (NM_001040439) -346 NM_015133 23162 Hs.207763 NM_015133 ENSG00000138834 MAPK8IP3 JIP-3|JIP3|JSAP1|SYD2|syd mitogen-activated protein kinase 8 interacting protein 3 protein-coding 28693 chr8 130693707 130693738 + 0 NA Intergenic L1P4d|LINE|L1 -250062 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 29951 chr9 115234186 115234322 + 0 NA intron (NM_017418, intron 2 of 7) intron (NM_017418, intron 2 of 7) 92436 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 18443 chr21 28436675 28436779 + 0 NA Intergenic Intergenic -102591 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 20218 chr3 136196703 136196807 + 0 NA promoter-TSS (NM_018133) promoter-TSS (NM_018133) -909 NM_018133 55167 Hs.18631 NM_018133 ENSG00000174579 MSL2 MSL-2|MSL2L1|RNF184 male-specific lethal 2 homolog (Drosophila) protein-coding 16935 chr2 202376145 202376299 + 0 NA promoter-TSS (NM_001204) promoter-TSS (NM_001204) -105 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 1815 chr1 155273451 155273594 + 0 NA promoter-TSS (NM_001294338) promoter-TSS (NM_001294338) 7 NM_001294339 1196 Hs.73986 NM_001291 ENSG00000176444 CLK2 - CDC like kinase 2 protein-coding 5015 chr11 23996107 23996211 + 0 NA Intergenic L1PREC2|LINE|L1 -500811 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 30293 chr9 132241402 132241460 + 0 NA intron (NM_032536, intron 7 of 7) CpG 79484 NM_032536 84628 Hs.163642 NM_032536 ENSG00000196358 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 16204 chr2 118971821 118971925 + 0 NA intron (NM_006770, intron 4 of 16) intron (NM_006770, intron 4 of 16) 29704 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 3662 chr10 48656394 48656547 + 0 NA promoter-TSS (NM_001347738) promoter-TSS (NM_001347738) -205 NR_045675 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 25374 chr6 154510726 154510830 + 0 NA promoter-TSS (NM_173515) promoter-TSS (NM_173515) -159 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 MAGI1 CNKSR family member 3 protein-coding 19582 chr3 57597462 57597466 + 0 NA promoter-TSS (NM_001660) promoter-TSS (NM_001660) 24 NM_001660 378 Hs.652183 NM_001660 ENSG00000168374 ARF4 ARF2 ADP ribosylation factor 4 protein-coding 4575 chr10 125585185 125585289 + 0 NA intron (NM_001318133, intron 3 of 3) LTR16D1|LTR|ERVL 10866 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 11646 chr16 75245390 75245430 + 0 NA intron (NM_001170715, intron 1 of 6) intron (NM_001170715, intron 1 of 6) 2916 NM_001170719 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 29185 chr9 71647286 71647372 + 0 NA Intergenic Intergenic 121555 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 16519 chr2 158761791 158761879 + 0 NA Intergenic Intergenic -26833 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 13740 chr18 67525405 67525509 + 0 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -8727 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4 dermatan sulfate epimerase-like protein-coding 14511 chr19 43783084 43783134 + 0 NA Intergenic Intergenic -1852 NM_002250 3783 Hs.10082 NM_002250 ENSG00000104783 KCNN4 DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4 potassium calcium-activated channel subfamily N member 4 protein-coding 29159 chr9 70111756 70111883 + 0 NA intron (NR_125850, intron 4 of 13) LTR33|LTR|ERVL 64069 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 17786 chr20 23606653 23606757 + 0 NA promoter-TSS (NM_001008693) promoter-TSS (NM_001008693) -732 NM_001008693 128822 Hs.698020 NM_001008693 ENSG00000173335 CST9 CLM|CTES7A cystatin 9 protein-coding 9610 chr14 95265535 95265639 + 0 NA intron (NM_024734, intron 1 of 12) intron (NM_024734, intron 1 of 12) 54321 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 5824 chr11 88544491 88544625 + 0 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 39982 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 5509 chr11 66268380 66268565 + 0 NA promoter-TSS (NM_030981) promoter-TSS (NM_030981) -113 NM_030981 81876 Hs.300816 NM_030981 ENSG00000174903 RAB1B - RAB1B, member RAS oncogene family protein-coding 29110 chr9 40992189 40992323 + 0 NA promoter-TSS (NR_034006) promoter-TSS (NR_034006) -6 NR_136306 102725126 Hs.231861 NR_136306 LOC102725126 - FSHD region gene 1 pseudogene pseudo 31092 chrX 135344085 135344186 + 0 NA promoter-TSS (NR_110381) promoter-TSS (NR_110381) -48 NR_110381 7626 Hs.371717 NM_007131 ENSG00000186376 ZNF75D D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28 zinc finger protein 75D protein-coding 19094 chr3 4995007 4995132 + 0 NA Intergenic Intergenic -15108 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 9205 chr14 64680350 64680484 + 0 NA Intergenic Intergenic -23991 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 2190 chr1 182236324 182236428 + 0 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 77685 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 30257 chr9 130427085 130427220 + 0 NA intron (NM_001291815, intron 90 of 97) intron (NM_001291815, intron 90 of 97) -17555 NM_054012 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 14135 chr19 12333690 12333831 + 0 NA promoter-TSS (NM_145276) promoter-TSS (NM_145276) -40 NM_145276 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 16788 chr2 186575408 186575575 + 0 NA Intergenic Intergenic -14572 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 19123 chr3 8724401 8724407 + 0 NA Intergenic Intergenic -9396 NM_033337 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 10549 chr15 80999736 80999840 + 0 NA Intergenic Intergenic -1166 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 MESDC1 - mesoderm development candidate 1 protein-coding 5467 chr11 65261739 65261833 + 0 NA promoter-TSS (NM_002689) promoter-TSS (NM_002689) -66 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 5265 chr11 57311429 57311621 + 0 NA intron (NM_033396, intron 5 of 11) intron (NM_033396, intron 5 of 11) 13414 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 15368 chr2 37786990 37787080 + 0 NA Intergenic Intergenic 42676 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 21563 chr4 88143674 88143778 + 0 NA intron (NM_001257386, intron 1 of 15) intron (NM_001257386, intron 1 of 15) 15133 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 30769 chrX 57595477 57595551 + 0 NA 3' UTR (NM_007157, exon 1 of 1) 3' UTR (NM_007157, exon 1 of 1) 3678 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger, X-linked, duplicated B protein-coding 21454 chr4 74682818 74682992 + 0 NA Intergenic L1MA2|LINE|L1 111781 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 7030 chr12 52280504 52280608 + 0 NA intron (NM_001320198, intron 2 of 10) intron (NM_001320198, intron 2 of 10) 5911 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 6418 chr11 134818669 134818812 + 0 NA Intergenic Intergenic -166612 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 9389 chr14 75254704 75254808 + 0 NA Intergenic Intergenic -24022 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 16007 chr2 99154911 99155069 + 0 NA promoter-TSS (NM_025244) promoter-TSS (NM_025244) 35 NR_037936 51601 Hs.719172 NM_015929 ENSG00000144182 LIPT1 LIPT1D lipoyltransferase 1 protein-coding 24324 chr6 30521209 30521337 + 0 NA Intergenic L1PA6|LINE|L1 31867 NM_005516 3133 Hs.650174 NM_005516 ENSG00000204592 HLA-E HLA-6.2|QA1 major histocompatibility complex, class I, E protein-coding 2980 chr1 234188554 234188683 + 0 NA intron (NM_173508, intron 2 of 7) L1PB1|LINE|L1 -25593 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 16061 chr2 105037896 105038065 + 0 NA promoter-TSS (NM_182640) promoter-TSS (NM_182640) -45 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 30101 chr9 124941083 124941233 + 0 NA promoter-TSS (NM_002077) promoter-TSS (NM_002077) -51 NM_002077 2800 Hs.59504 NM_002077 ENSG00000136935 GOLGA1 golgin-97 golgin A1 protein-coding 25400 chr6 157221244 157221348 + 0 NA Intergenic L1MC4a|LINE|L1 102963 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 24589 chr6 43369608 43369747 + 0 NA promoter-TSS (NM_014345) promoter-TSS (NM_014345) -234 NM_014345 24149 Hs.509718 NM_014345 ENSG00000171467 ZNF318 HRIHFB2436|TZF|ZFP318 zinc finger protein 318 protein-coding 13767 chr18 72544394 72544404 + 0 NA promoter-TSS (NM_182511) promoter-TSS (NM_182511) 89 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 25333 chr6 150272679 150272821 + 0 NA Intergenic Intergenic -96142 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 5056 chr11 28049454 28049591 + 0 NA intron (NM_031217, intron 13 of 16) intron (NM_031217, intron 13 of 16) -7293 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 5883 chr11 94732238 94732335 + 0 NA intron (NR_135096, intron 1 of 6) intron (NR_135096, intron 1 of 6) 8069 NR_135093 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 9410 chr14 76773682 76773786 + 0 NA intron (NM_014909, intron 4 of 6) intron (NM_014909, intron 4 of 6) 11842 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036 vasohibin 1 protein-coding 30109 chr9 125261682 125261787 + 0 NA promoter-TSS (NM_001282679) promoter-TSS (NM_001282679) -60 NM_001282679 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 18674 chr22 21982735 21982840 + 0 NA promoter-TSS (NM_001282112) promoter-TSS (NM_001282112) 56 NM_001282112 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 topoisomerase (DNA) III beta protein-coding 12487 chr17 41579572 41579663 + 0 NA Intergenic Intergenic 7278 NM_000526 3861 Hs.654380 NM_000526 ENSG00000186847 KRT14 CK14|EBS3|EBS4|K14|NFJ keratin 14 protein-coding 15047 chr2 12928343 12928447 + 0 NA Intergenic Intergenic 78618 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 5356 chr11 62013638 62013726 + 0 NA Intergenic Intergenic -46022 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 6890 chr12 42326045 42326174 + 0 NA promoter-TSS (NM_033114) promoter-TSS (NM_033114) 21 NM_033114 85437 Hs.496279 NM_033114 ENSG00000139168 ZCRB1 MADP-1|MADP1|RBM36|SNRNP31|ZCCHC19 zinc finger CCHC-type and RNA binding motif containing 1 protein-coding 2625 chr1 212202627 212202749 + 0 NA Intergenic Intergenic 32048 NR_125982 101929541 Hs.632493 NR_125982 ENSG00000226251 LOC101929541 - uncharacterized LOC101929541 ncRNA 24870 chr6 84645051 84645155 + 0 NA Intergenic L2c|LINE|L2 -44355 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 3400 chr10 21870890 21870994 + 0 NA intron (NM_022365, intron 8 of 11) L1ME2|LINE|L1 132779 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 10001 chr15 43826866 43826970 + 0 NA promoter-TSS (NM_001167941) promoter-TSS (NM_001167941) 4 NM_024908 79968 Hs.250154 NM_024908 ENSG00000092470 WDR76 CDW14 WD repeat domain 76 protein-coding 5143 chr11 34653917 34654021 + 0 NA intron (NM_012153, intron 6 of 8) intron (NM_012153, intron 6 of 8) 21505 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 20031 chr3 122533997 122534131 + 0 NA 3' UTR (NM_001146106, exon 10 of 10) 3' UTR (NM_001146106, exon 10 of 10) -19125 NR_026698 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 16 chr1 1324813 1324917 + 0 NA promoter-TSS (NM_001256463) promoter-TSS (NM_001256463) 102 NM_001029885 80772 Hs.515689 NM_001029885 ENSG00000224051 CPTP GLTPD1 ceramide-1-phosphate transfer protein protein-coding 23413 chr5 143244031 143244212 + 0 NA Intergenic Intergenic 51621 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 8428 chr13 83754243 83754402 + 0 NA Intergenic L1PA7|LINE|L1 128071 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 31173 chrX 153764079 153764233 + 0 NA promoter-TSS (NM_001163257) promoter-TSS (NM_001163257) -40 NM_005393 5365 Hs.632833 NM_005393 ENSG00000198753 PLXNB3 PLEXB3|PLEXR|PLXN6 plexin B3 protein-coding 28077 chr8 80171573 80171623 + 0 NA promoter-TSS (NR_105036) promoter-TSS (NR_105036) 61 NM_005079 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 19301 chr3 30606470 30606610 + 0 NA promoter-TSS (NM_003242) promoter-TSS (NM_003242) 38 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 16967 chr2 205889375 205889479 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR 196755 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 15203 chr2 26018205 26018371 + 0 NA Intergenic Intergenic -15572 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 2880 chr1 227999376 227999574 + 0 NA Intergenic Intergenic -7547 NM_033131 89780 Hs.336930 NM_033131 ENSG00000154342 WNT3A - Wnt family member 3A protein-coding 5233 chr11 46389553 46389657 + 0 NA Intergenic CpG -2997 NM_000741 1132 Hs.248100 NM_000741 ENSG00000180720 CHRM4 HM4|M4R cholinergic receptor muscarinic 4 protein-coding 18907 chr22 38982209 38982372 + 0 NA promoter-TSS (NM_001270411) promoter-TSS (NM_001270411) -109 NM_001270411 9582 Hs.226307 NM_004900 ENSG00000179750 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme catalytic subunit 3B protein-coding 21334 chr4 48017212 48017372 + 0 NA intron (NM_207330, intron 1 of 5) CpG 520 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 20440 chr3 153161325 153161438 + 0 NA promoter-TSS (NM_002886) promoter-TSS (NM_002886) -831 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 10470 chr15 75666811 75666967 + 0 NA Intergenic Intergenic 17882 NM_001318146 257364 Hs.8705 NM_153271 ENSG00000173548 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 7998 chr13 26022740 26022848 + 0 NA 3' UTR (NM_016529, exon 37 of 37) 3' UTR (NM_016529, exon 37 of 37) 28266 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 22552 chr5 55712339 55712458 + 0 NA promoter-TSS (NM_001282429) promoter-TSS (NM_001282429) -63 NM_173514 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 22545 chr5 55233622 55233760 + 0 NA promoter-TSS (NR_125348) promoter-TSS (NR_125348) 26 NM_021147 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 25344 chr6 151391759 151391863 + 0 NA promoter-TSS (NM_020861) promoter-TSS (NM_020861) -111 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 29993 chr9 116856335 116856479 + 0 NA intron (NM_014010, intron 10 of 21) intron (NM_014010, intron 10 of 21) 169105 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 18417 chr21 10655502 10655653 + 0 NA Intergenic (TCCATTCCAT)n|Simple_repeat|Simple_repeat 134063 NM_199260 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 5360 chr11 62123767 62123899 + 0 NA promoter-TSS (NM_001040694) promoter-TSS (NM_001040694) -140 NM_001040694 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 25256 chr6 143328948 143329089 + 0 NA intron (NM_016108, intron 4 of 5) intron (NM_016108, intron 4 of 5) 113659 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase, tRNA specific 2 protein-coding 22132 chr4 190179488 190179627 + 0 NA intron (NR_137167, intron 2 of 5) BSR/Beta|Satellite|Satellite 5783 NR_137167 100288687 Hs.728749 NM_001205218 ENSG00000260596 DUX4 DUX4L double homeobox 4 protein-coding 19978 chr3 119181962 119182128 + 0 NA intron (NM_006952, intron 1 of 7) intron (NM_006952, intron 1 of 7) 8467 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 17750 chr20 21323725 21323829 + 0 NA intron (NM_001317960, intron 1 of 29) intron (NM_001317960, intron 1 of 29) 20279 NM_001317960 22803 Hs.255932 NM_012255 ENSG00000088930 XRN2 - 5'-3' exoribonuclease 2 protein-coding 2140 chr1 179081966 179082077 + 0 NA promoter-TSS (NM_022371) promoter-TSS (NM_022371) 44 NM_022371 64222 Hs.584957 NM_022371 ENSG00000186283 TOR3A ADIR|ADIR2 torsin family 3 member A protein-coding 4667 chr11 615618 615722 + 0 NA promoter-TSS (NM_004031) promoter-TSS (NM_004031) 58 NM_004031 3665 Hs.166120 NM_001572 ENSG00000185507 IRF7 IMD39|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H interferon regulatory factor 7 protein-coding 22950 chr5 99900662 99900790 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 366736 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 7763 chr12 120903449 120903531 + 0 NA intron (NM_139015, intron 1 of 10) intron (NM_139015, intron 1 of 10) 862 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 20576 chr3 165206929 165207033 + 0 NA promoter-TSS (NR_125764) promoter-TSS (NR_125764) 21 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 22553 chr5 55995032 55995175 + 0 NA promoter-TSS (NM_001190981) promoter-TSS (NM_001190981) -64 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 27601 chr8 27614712 27614809 + 0 NA promoter-TSS (NM_001831) promoter-TSS (NM_001831) 51 NM_001831 1191 Hs.436657 NM_001831 ENSG00000120885 CLU AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 clusterin protein-coding 29355 chr9 81132504 81132608 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 556979 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 374 chr1 24285448 24285534 + 0 NA Intergenic Intergenic -33831 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 3040 chr1 237562466 237562570 + 0 NA intron (NM_001035, intron 27 of 104) intron (NM_001035, intron 27 of 104) 91399 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 1306 chr1 92080458 92080562 + 0 NA 5' UTR (NM_183242, exon 1 of 9) 5' UTR (NM_183242, exon 1 of 9) 205 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 429 chr1 26693148 26693243 + 0 NA non-coding (NR_135804, exon 1 of 1) non-coding (NR_135804, exon 1 of 1) 936 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 14090 chr19 10809425 10809551 + 0 NA intron (NM_001190716, intron 14 of 20) intron (NM_001190716, intron 14 of 20) 8008 NR_029586 406976 NR_029586 ENSG00000207752 MIR199A1 MIR-199-s|MIRN199A1|mir-199a-1 microRNA 199a-1 ncRNA 14245 chr19 17470229 17470377 + 0 NA promoter-TSS (NM_198580) promoter-TSS (NM_198580) -141 NM_198580 376497 Hs.363138 NM_198580 ENSG00000130304 SLC27A1 ACSVL5|FATP|FATP-1|FATP1 solute carrier family 27 member 1 protein-coding 22241 chr5 14011597 14011701 + 0 NA Intergenic CpG -67169 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 15076 chr2 15674646 15674750 + 0 NA Intergenic Intergenic -16084 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 20981 chr3 192851983 192852152 + 0 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 66094 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 14503 chr19 43464073 43464177 + 0 NA intron (NM_014400, intron 2 of 4) CpG-14618 1554 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 15854 chr2 75606238 75606342 + 0 NA Intergenic Intergenic -36568 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 27050 chr7 134547733 134547837 + 0 NA Intergenic Intergenic -1312 NM_001080538 441282 Hs.729418 NM_001080538 ENSG00000227471 AKR1B15 AKR1B10L|AKR1B10L, AK1R1B7|AKR1R1B7 aldo-keto reductase family 1 member B15 protein-coding 9535 chr14 89955924 89955953 + 0 NA promoter-TSS (NM_001008744) promoter-TSS (NM_001008744) -31 NM_001330205 55775 Hs.209945 NM_018319 ENSG00000042088 TDP1 - tyrosyl-DNA phosphodiesterase 1 protein-coding 24128 chr6 17962578 17962587 + 0 NA intron (NM_001243423, intron 2 of 2) intron (NM_001243423, intron 2 of 2) 25041 NM_001105568 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 18961 chr22 41667595 41667672 + 0 NA Intergenic Intergenic 21276 NM_005008 4809 Hs.182255 NM_005008 ENSG00000100138 SNU13 15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) protein-coding 10917 chr16 3134921 3135022 + 0 NA promoter-TSS (NM_001134655) promoter-TSS (NM_001134655) -85 NR_104432 7760 Hs.115284 NM_004220 ENSG00000085644 ZNF213 CR53|ZKSCAN21|ZSCAN53 zinc finger protein 213 protein-coding 9026 chr14 54252067 54252171 + 0 NA Intergenic Intergenic -144749 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 9745 chr14 104882506 104882610 + 0 NA intron (NM_001112726, intron 6 of 18) intron (NM_001112726, intron 6 of 18) 17245 NM_015005 283638 Hs.533721 NM_015005 ENSG00000099814 CEP170B CEP170R|FAM68C|KIAA0284 centrosomal protein 170B protein-coding 1392 chr1 99580510 99580673 + 0 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -65284 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 16164 chr2 113068999 113069059 + 0 NA intron (NM_173161, intron 1 of 4) intron (NM_173161, intron 1 of 4) 1059 NM_173161 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 (theta) protein-coding 1080 chr1 67749573 67749677 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 64448 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 17064 chr2 215137837 215138013 + 0 NA intron (NR_103740, intron 1 of 54) intron (NR_103740, intron 1 of 54) 503 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 17303 chr2 233854556 233854636 + 0 NA promoter-TSS (NM_001282962) promoter-TSS (NM_001282962) -30 NM_001282962 55355 Hs.532968 NM_018410 ENSG00000123485 HJURP FAKTS|URLC9|hFLEG1 Holliday junction recognition protein protein-coding 26242 chr7 48365247 48365351 + 0 NA intron (NM_152701, intron 31 of 61) L1MA4|LINE|L1 193839 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 4724 chr11 4484443 4484547 + 0 NA Intergenic L2|LINE|L2 -4384 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 28149 chr8 87938160 87938299 + 0 NA Intergenic LTR23|LTR|ERV1 -64161 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 10364 chr15 69685656 69685796 + 0 NA intron (NR_126437, intron 5 of 5) MER96|DNA|hAT-Tip100 93526 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000259641 PCAT29 - prostate cancer associated transcript 29 (non-protein coding) ncRNA 20274 chr3 140629950 140629996 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -48051 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 17232 chr2 229273827 229273931 + 0 NA Intergenic Intergenic -2538 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 5389 chr11 62831741 62831859 + 0 NA promoter-TSS (NR_135084) promoter-TSS (NR_135084) 291 NM_003164 6811 Hs.654602 NM_003164 ENSG00000162236 STX5 SED5|STX5A syntaxin 5 protein-coding 19857 chr3 111338172 111338295 + 0 NA Intergenic Intergenic -203846 NR_134917 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 6653 chr12 13390579 13390606 + 0 NA Intergenic Intergenic -13847 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 970 chr1 60281587 60281610 + 0 NA Intergenic Intergenic -207828 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 6200 chr11 119845896 119846000 + 0 NA Intergenic Intergenic 116365 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 26543 chr7 87465358 87465462 + 0 NA intron (NM_018849, intron 3 of 27) L1PA5|LINE|L1 10293 NM_000443 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 9699 chr14 102263144 102263248 + 0 NA intron (NM_001330234, intron 4 of 11) intron (NM_001330234, intron 4 of 11) -22575 NR_073541 5891 Hs.104119 NM_014226 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 28117 chr8 84626271 84626438 + 0 NA intron (NM_001100391, intron 2 of 8) intron (NM_001100391, intron 2 of 8) -79573 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein-like protein-coding 22415 chr5 39256640 39256767 + 0 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) 13954 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 16930 chr2 201798284 201798388 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -8093 NM_139158 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 25082 chr6 122610421 122610525 + 0 NA 5' UTR (NM_181795, exon 1 of 5) 5' UTR (NM_181795, exon 1 of 5) 241 NM_181795 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 15737 chr2 69307271 69307360 + 0 NA Intergenic CpG 79939 NM_001244710 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 20857 chr3 185950905 185950962 + 0 NA Intergenic Intergenic -9036 NR_033752 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 9594 chr14 94129581 94129694 + 0 NA promoter-TSS (NM_032036) promoter-TSS (NM_032036) -17 NM_032036 83982 Hs.94695 NM_032036 ENSG00000119632 IFI27L2 FAM14A|ISG12B|TLH29 interferon alpha inducible protein 27 like 2 protein-coding 17126 chr2 219498729 219498833 + 0 NA promoter-TSS (NM_013335) promoter-TSS (NM_013335) -84 NM_013335 29926 Hs.27059 NM_013335 ENSG00000144591 GMPPA AAMR GDP-mannose pyrophosphorylase A protein-coding 12305 chr17 30970938 30971035 + 0 NA promoter-TSS (NM_197939) promoter-TSS (NM_197939) 48 NM_197939 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 2361 chr1 201259574 201259678 + 0 NA Intergenic Intergenic -23826 NM_001005337 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 8314 chr13 60396336 60396486 + 0 NA promoter-TSS (NM_001146071) promoter-TSS (NM_001146071) -46 NM_001146071 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 14447 chr19 39970988 39971113 + 0 NA promoter-TSS (NM_006503) promoter-TSS (NM_006503) 45 NM_006503 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome 26S subunit, ATPase 4 protein-coding 21177 chr4 10174410 10174534 + 0 NA Intergenic MER9B|LTR|ERVK -57523 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 16258 chr2 123715677 123715720 + 0 NA Intergenic Intergenic -309589 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 20506 chr3 157500342 157500446 + 0 NA promoter-TSS (NM_024621) promoter-TSS (NM_024621) -738 NM_024621 79674 Hs.658046 NM_024621 ENSG00000197415 VEPH1 MELT|VEPH ventricular zone expressed PH domain containing 1 protein-coding 19458 chr3 47475853 47475957 + 0 NA promoter-TSS (NM_001320044) promoter-TSS (NM_001320044) 54 NM_001320044 22937 Hs.531789 NM_012235 ENSG00000114650 SCAP - SREBF chaperone protein-coding 17881 chr20 33686519 33686623 + 0 NA promoter-TSS (NM_005225) promoter-TSS (NM_005225) -167 NM_005225 1869 Hs.654393 NM_005225 ENSG00000101412 E2F1 E2F-1|RBAP1|RBBP3|RBP3 E2F transcription factor 1 protein-coding 22396 chr5 38441863 38441992 + 0 NA intron (NM_152403, intron 17 of 21) intron (NM_152403, intron 17 of 21) -3549 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 10901 chr16 2858113 2858273 + 0 NA promoter-TSS (NM_022119) promoter-TSS (NM_022119) -23 NM_022119 64063 Hs.459709 NM_022119 ENSG00000005001 PRSS22 BSSP-4|SP001LA|hBSSP-4 protease, serine 22 protein-coding 20360 chr3 149129563 149129706 + 0 NA promoter-TSS (NM_001308258) promoter-TSS (NM_001308258) 50 NM_032383 84343 Hs.558314 NM_032383 ENSG00000163755 HPS3 BLOC2S1|SUTAL HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 protein-coding 14561 chr19 45497165 45497307 + 0 NA promoter-TSS (NM_005619) promoter-TSS (NM_005619) -181 NM_005619 6253 Hs.47517 NM_005619 ENSG00000125744 RTN2 NSP2|NSPL1|NSPLI|SPG12 reticulon 2 protein-coding 18070 chr20 44610057 44610198 + 0 NA intron (NM_001281444, intron 4 of 5) intron (NM_001281444, intron 4 of 5) 27578 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 24944 chr6 99515372 99515525 + 0 NA promoter-TSS (NM_001080481) promoter-TSS (NM_001080481) 41 NR_144348 85015 Hs.143410 NM_032929 ENSG00000123552 USP45 - ubiquitin specific peptidase 45 protein-coding 3086 chr1 241998520 241998624 + 0 NA exon (NM_001004343, exon 3 of 4) exon (NM_001004343, exon 3 of 4) 511 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 16112 chr2 109702458 109702608 + 0 NA Intergenic Intergenic 88199 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 4749 chr11 6481333 6481486 + 0 NA promoter-TSS (NM_012192) promoter-TSS (NM_012192) -38 NM_012192 26515 Hs.54943 NM_012192 ENSG00000132286 TIMM10B FXC1|TIM10B|Tim9b translocase of inner mitochondrial membrane 10B protein-coding 6861 chr12 38149460 38149660 + 0 NA Intergenic Intergenic -167195 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 12292 chr17 29732862 29732902 + 0 NA intron (NM_001282130, intron 2 of 7) intron (NM_001282130, intron 2 of 7) 28550 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 19800 chr3 105366623 105366770 + 0 NA promoter-TSS (NM_001627) promoter-TSS (NM_001627) -17 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 14844 chr19 57389721 57389788 + 0 NA promoter-TSS (NM_001172773) promoter-TSS (NM_001172773) -96 NM_152909 147694 Hs.126905 NM_152909 ENSG00000188785 ZNF548 - zinc finger protein 548 protein-coding 14407 chr19 38135340 38135406 + 0 NA intron (NM_015073, intron 10 of 21) intron (NM_015073, intron 10 of 21) 88877 NM_001289978 8193 Hs.631576 NM_004647 ENSG00000011332 DPF1 BAF45b|NEUD4|neuro-d4 double PHD fingers 1 protein-coding 17863 chr20 32277507 32277683 + 0 NA promoter-TSS (NM_004798) promoter-TSS (NM_004798) -56 NM_004798 9371 Hs.369670 NM_004798 ENSG00000101350 KIF3B FLA8|HH0048|KLP-11 kinesin family member 3B protein-coding 18759 chr22 29388545 29388641 + 0 NA promoter-TSS (NM_001127) promoter-TSS (NM_001127) -10 NM_145730 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 beta 1 subunit protein-coding 11728 chr16 81600407 81600511 + 0 NA intron (NM_030629, intron 1 of 20) L1MB5|LINE|L1 -10889 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 25914 chr7 26918367 26918471 + 0 NA Intergenic Intergenic -53676 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 26293 chr7 54759252 54759354 + 0 NA promoter-TSS (NR_110040) promoter-TSS (NR_110040) -10 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 13467 chr18 41761852 41761875 + 0 NA Intergenic Intergenic -193335 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 8180 chr13 42271932 42271961 + 0 NA promoter-TSS (NM_016248) promoter-TSS (NM_016248) -207 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 25353 chr6 152095373 152095419 + 0 NA intron (NM_001122740, intron 8 of 8) MLT1K|LTR|ERVL-MaLR 72891 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 19607 chr3 58880354 58880458 + 0 NA intron (NM_198463, intron 7 of 15) L1ME4b|LINE|L1 55935 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 5037 chr11 26704388 26704492 + 0 NA intron (NM_178498, intron 4 of 14) intron (NM_178498, intron 4 of 14) 17587 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 13622 chr18 56638669 56638817 + 0 NA promoter-TSS (NM_004786) promoter-TSS (NM_004786) -54 NR_024546 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 2007 chr1 166944739 166944843 + 0 NA intron (NM_199351, intron 3 of 9) L2c|LINE|L2 30533 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 29317 chr9 78235981 78236152 + 0 NA promoter-TSS (NM_032171) promoter-TSS (NM_032171) 4 NM_001330691 84131 Hs.374421 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 29126 chr9 68740714 68740863 + 0 NA intron (NM_001278253, intron 1 of 13) intron (NM_001278253, intron 1 of 13) 35374 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 29936 chr9 114733955 114734059 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -51918 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 LOC100505478 - uncharacterized LOC100505478 protein-coding 9673 chr14 100376405 100376509 + 0 NA promoter-TSS (NM_213645) promoter-TSS (NM_213645) 39 NM_001161476 79446 Hs.497600 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 5341 chr11 61378820 61378938 + 0 NA Intergenic L1MEg1|LINE|L1 -13481 NM_001173991 51259 Hs.26745 NM_016499 ENSG00000187049 TMEM216 HSPC244 transmembrane protein 216 protein-coding 9727 chr14 103563125 103563278 + 0 NA promoter-TSS (NM_001015049) promoter-TSS (NM_001015049) 244 NR_126431 84334 Hs.598441 NM_032374 ENSG00000256053 APOPT1 APOP|APOP1|C14orf153 apoptogenic 1, mitochondrial protein-coding 30302 chr9 132894485 132894589 + 0 NA 3' UTR (NM_001162426, exon 23 of 23) 3' UTR (NM_001162426, exon 23 of 23) 15646 NM_001316900 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 6395 chr11 133082986 133083090 + 0 NA intron (NM_001012393, intron 1 of 7) CpG -139270 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 7626 chr12 109097945 109098080 + 0 NA promoter-TSS (NM_003362) promoter-TSS (NM_003362) -106 NM_003362 7374 Hs.191334 NM_003362 ENSG00000076248 UNG DGU|HIGM4|HIGM5|UDG|UNG1|UNG15|UNG2 uracil DNA glycosylase protein-coding 27795 chr8 48923468 48923595 + 0 NA Intergenic CpG -2091 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 26321 chr7 55964942 55965046 + 0 NA intron (NM_001202469, intron 1 of 7) CpG 417 NM_001483 2631 Hs.591069 NM_001483 ENSG00000146729 GBAS NIPSNAP2 glioblastoma amplified sequence protein-coding 25814 chr7 20798027 20798237 + 0 NA Intergenic CpG -11243 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 22845 chr5 88141460 88141608 + 0 NA Intergenic CpG 127345 NM_001289008 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 16000 chr2 98758252 98758366 + 0 NA Intergenic Intergenic 13589 NR_126337 101927070 Hs.469395 NR_126337 LOC101927070 - uncharacterized LOC101927070 ncRNA 26960 chr7 126701191 126701229 + 0 NA intron (NM_000845, intron 6 of 9) intron (NM_000845, intron 6 of 9) 356974 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 16510 chr2 157831338 157831442 + 0 NA intron (NM_001347664, intron 1 of 11) intron (NM_001347664, intron 1 of 11) 6888 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 6859 chr12 38057092 38057105 + 0 NA Intergenic AluJr|SINE|Alu -259657 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 5641 chr11 73218416 73218520 + 0 NA promoter-TSS (NM_176071) promoter-TSS (NM_176071) 11 NM_176071 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 23719 chr5 172283752 172283943 + 0 NA promoter-TSS (NM_152277) promoter-TSS (NM_152277) -56 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 27663 chr8 33473066 33473224 + 0 NA promoter-TSS (NM_032664) promoter-TSS (NM_032664) 1 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 3393 chr10 21525917 21525919 + 0 NA promoter-TSS (NM_207371) promoter-TSS (NM_207371) -236 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 13348 chr18 26386167 26386271 + 0 NA intron (NR_121653, intron 15 of 15) intron (NR_121653, intron 15 of 15) -36776 NR_110762 100506787 Hs.734746 NR_110762 LINC01543 - long intergenic non-protein coding RNA 1543 ncRNA 12100 chr17 10292783 10292887 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 80170 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 10041 chr15 47820862 47820966 + 0 NA intron (NR_120336, intron 3 of 4) intron (NR_120336, intron 3 of 4) 25322 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 28809 chr8 143368653 143368788 + 0 NA promoter-TSS (NR_026785) promoter-TSS (NR_026785) -85 NR_026785 78998 Hs.245886 NM_024035 ENSG00000254389 RHPN1-AS1 C8orf51 RHPN1 antisense RNA 1 (head to head) ncRNA 24381 chr6 31822238 31822350 + 0 NA Intergenic Intergenic -5441 NM_005346 3304 Hs.274402 NM_005346 ENSG00000204388 HSPA1B HSP70-1B|HSP70-2|HSP70.2 heat shock protein family A (Hsp70) member 1B protein-coding 12852 chr17 64680043 64680147 + 0 NA Intergenic Intergenic -17827 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 26492 chr7 80722855 80722993 + 0 NA Intergenic Intergenic 76271 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 27182 chr7 147579124 147579228 + 0 NA intron (NM_014141, intron 12 of 23) intron (NM_014141, intron 12 of 23) -92503 NR_133930 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 26066 chr7 36686640 36686744 + 0 NA intron (NM_001177507, intron 1 of 19) intron (NM_001177507, intron 1 of 19) 37857 NM_001177506 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 19967 chr3 118628806 118628910 + 0 NA intron (NR_135547, intron 2 of 3) intron (NR_135547, intron 2 of 3) -12910 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 18260 chr20 53899662 53899768 + 0 NA Intergenic Intergenic -24006 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 4891 chr11 14415293 14415306 + 0 NA Intergenic Intergenic -50793 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 8689 chr14 21477002 21477149 + 0 NA promoter-TSS (NM_001163380) promoter-TSS (NM_001163380) -101 NM_014828 9878 Hs.555910 NM_014828 ENSG00000092203 TOX4 C14orf92|KIAA0737|LCP1|MIG7 TOX high mobility group box family member 4 protein-coding 5411 chr11 63838911 63839015 + 0 NA promoter-TSS (NM_001039469) promoter-TSS (NM_001039469) 35 NM_001039469 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 12658 chr17 50062575 50062727 + 0 NA intron (NM_002204, intron 1 of 25) intron (NM_002204, intron 1 of 25) 6683 NM_002204 3675 Hs.265829 NM_002204 ENSG00000005884 ITGA3 CD49C|FRP-2|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a integrin subunit alpha 3 protein-coding 14650 chr19 48543482 48543621 + 0 NA Intergenic Intergenic -8621 NM_177973 6820 Hs.369331 NM_004605 ENSG00000088002 SULT2B1 HSST2 sulfotransferase family 2B member 1 protein-coding 26251 chr7 49398825 49398976 + 0 NA Intergenic Intergenic -374761 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 25698 chr7 12802206 12802247 + 0 NA Intergenic LTR33|LTR|ERVL 114940 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 25652 chr7 7321881 7321985 + 0 NA Intergenic Intergenic 66779 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 24937 chr6 98947851 98947931 + 0 NA non-coding (NR_103837, exon 1 of 5) non-coding (NR_103837, exon 1 of 5) 115 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 5178 chr11 36500526 36500630 + 0 NA intron (NM_145803, intron 3 of 7) L2a|LINE|L2 9735 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 20380 chr3 149678505 149678577 + 0 NA intron (NM_001168278, intron 1 of 7) Charlie17b|DNA|hAT-Charlie 20331 NR_040250 100128025 Hs.594912 NR_040250 ENSG00000241313 WWTR1-AS1 - WWTR1 antisense RNA 1 ncRNA 21815 chr4 138259984 138260083 + 0 NA Intergenic Intergenic -17684 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 18862 chr22 37255044 37255148 + 0 NA Intergenic L1M5|LINE|L1 -10797 NM_002872 5880 Hs.517601 NM_002872 ENSG00000128340 RAC2 EN-7|Gx|HSPC022|p21-Rac2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) protein-coding 3363 chr10 17756859 17756963 + 0 NA intron (NM_001098844, intron 1 of 3) intron (NM_001098844, intron 1 of 3) 4650 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 11810 chr16 87317361 87317511 + 0 NA promoter-TSS (NM_001195125) promoter-TSS (NM_001195125) -16 NM_001195124 100506581 Hs.729380 NM_001195124 ENSG00000260456 C16orf95 - chromosome 16 open reading frame 95 protein-coding 18954 chr22 41444393 41444428 + 0 NA intron (NM_016272, intron 1 of 1) intron (NM_016272, intron 1 of 1) 2613 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 1219 chr1 85607232 85607310 + 0 NA Intergenic Intergenic 26510 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CYR61 CCN1|GIG1|IGFBP10 cysteine rich angiogenic inducer 61 protein-coding 18928 chr22 40177816 40177967 + 0 NA promoter-TSS (NM_015088) promoter-TSS (NM_015088) -34 NM_015088 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing 6B protein-coding 1749 chr1 152906310 152906491 + 0 NA Intergenic Intergenic -2163 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 12811 chr17 62065994 62066098 + 0 NA promoter-TSS (NM_005121) promoter-TSS (NM_005121) -764 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 14497 chr19 42387092 42387227 + 0 NA exon (NM_032488, exon 4 of 4) exon (NM_032488, exon 4 of 4) 3133 NM_032488 84518 Hs.148590 NM_032488 ENSG00000105427 CNFN PLAC8L2 cornifelin protein-coding 2128 chr1 178126826 178126930 + 0 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -32885 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 20688 chr3 175535536 175535640 + 0 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 166048 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 28296 chr8 100396028 100396167 + 0 NA Intergenic Intergenic 13334 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 16515 chr2 158456703 158456855 + 0 NA promoter-TSS (NM_003628) promoter-TSS (NM_003628) -26 NM_001301685 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 26758 chr7 103735507 103735555 + 0 NA intron (NM_173054, intron 6 of 63) intron (NM_173054, intron 6 of 63) 253985 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 8391 chr13 77478310 77478386 + 0 NA Intergenic Intergenic -57326 NM_144777 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 25108 chr6 125245751 125245879 + 0 NA intron (NM_001003395, intron 3 of 6) L1PBa|LINE|L1 42176 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 tumor protein D52-like 1 protein-coding 14775 chr19 54115725 54115829 + 0 NA promoter-TSS (NM_013342) promoter-TSS (NM_013342) -102 NM_013342 29844 Hs.590939 NM_013342 ENSG00000105619 TFPT FB1|INO80F|amida TCF3 fusion partner protein-coding 21897 chr4 150258708 150258812 + 0 NA Intergenic Intergenic 180486 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 7905 chr12 132144284 132144429 + 0 NA promoter-TSS (NM_175066) promoter-TSS (NM_175066) -21 NM_175066 317781 Hs.445168 NM_175066 ENSG00000185163 DDX51 - DEAD-box helicase 51 protein-coding 25901 chr7 26083309 26083418 + 0 NA Intergenic Intergenic -68864 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 7755 chr12 120495881 120496042 + 0 NA promoter-TSS (NM_003746) promoter-TSS (NM_003746) -15 NR_038854 100506668 Hs.660080 NR_038854 ENSG00000248008 NRAV DYNLL1-AS1|DYNLL1AS1 negative regulator of antiviral response (non-protein coding) ncRNA 31073 chrX 133054147 133054251 + 0 NA Intergenic Intergenic -25927 NM_031907 83844 Hs.333137 NM_031907 ENSG00000134588 USP26 - ubiquitin specific peptidase 26 protein-coding 16692 chr2 174998530 174998634 + 0 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 6671 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 27430 chr8 14264465 14264606 + 0 NA intron (NM_001322879, intron 2 of 6) L1M1|LINE|L1 588975 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 29099 chr9 38008369 38008411 + 0 NA intron (NM_003028, intron 2 of 5) intron (NM_003028, intron 2 of 5) 60823 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 28460 chr8 116766386 116766531 + 0 NA promoter-TSS (NM_032334) promoter-TSS (NM_032334) -45 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23, small subunit processome component protein-coding 7492 chr12 98397610 98397714 + 0 NA Intergenic Intergenic 59483 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 2737 chr1 220368612 220368716 + 0 NA Intergenic L3|LINE|CR1 -96163 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 7103 chr12 55729310 55729414 + 0 NA promoter-TSS (NM_001257391) promoter-TSS (NM_001257391) -224 NM_001780 967 Hs.445570 NM_001780 ENSG00000135404 CD63 LAMP-3|ME491|MLA1|OMA81H|TSPAN30 CD63 molecule protein-coding 29895 chr9 112486691 112486795 + 0 NA promoter-TSS (NM_001287036) promoter-TSS (NM_001287036) -225 NM_001287036 158405 Hs.656619 NM_133465 ENSG00000165185 KIAA1958 - KIAA1958 protein-coding 13915 chr19 2977327 2977434 + 0 NA promoter-TSS (NM_024760) promoter-TSS (NM_024760) -153 NR_138612 79816 Hs.334507 NM_024760 ENSG00000104953 TLE6 GRG6|PREMBL transducin like enhancer of split 6 protein-coding 28776 chr8 141128292 141128438 + 0 NA promoter-TSS (NM_014957) promoter-TSS (NM_014957) -256 NM_014957 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 20750 chr3 180251043 180251075 + 0 NA Intergenic Intergenic -163114 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 11188 chr16 28945607 28945773 + 0 NA Intergenic Intergenic -5307 NM_032815 84901 Hs.513470 NM_032815 ENSG00000176953 NFATC2IP ESC2|NIP45|RAD60 nuclear factor of activated T-cells 2 interacting protein protein-coding 30221 chr9 129167109 129167331 + 0 NA Intergenic (CTCC)n|Simple_repeat|Simple_repeat 11041 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5 like protein-coding 17099 chr2 218287316 218287425 + 0 NA promoter-TSS (NM_001321429) promoter-TSS (NM_001321429) -67 NM_001321429 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 27701 chr8 38176449 38176594 + 0 NA promoter-TSS (NM_001204878) promoter-TSS (NM_001204878) -67 NM_001204878 9530 Hs.194726 NM_004874 ENSG00000156735 BAG4 BAG-4|SODD BCL2 associated athanogene 4 protein-coding 12016 chr17 6872221 6872372 + 0 NA intron (NR_002710, intron 2 of 13) LTR57|LTR|ERVL 18720 NR_002710 245 Hs.378695 NR_002710 ENSG00000262943 ALOX12P2 ALOX12E arachidonate 12-lipoxygenase pseudogene 2 pseudo 26852 chr7 115004308 115004412 + 0 NA intron (NM_001166345, intron 4 of 4) BC200|scRNA|scRNA -74598 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 1385 chr1 98677406 98677611 + 0 NA intron (NR_033716, intron 2 of 8) L1MC4|LINE|L1 15828 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 9020 chr14 53840571 53840694 + 0 NA Intergenic Intergenic 107852 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 31093 chrX 135344653 135344797 + 0 NA promoter-TSS (NR_110381) promoter-TSS (NR_110381) -46 NM_152695 203523 Hs.28780 NM_152695 ENSG00000173275 ZNF449 ZSCAN19 zinc finger protein 449 protein-coding 5168 chr11 36034990 36035001 + 0 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 24897 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 4156 chr10 97426164 97426268 + 0 NA promoter-TSS (NM_002629) promoter-TSS (NM_002629) 91 NM_002629 5223 Hs.632918 NM_002629 ENSG00000171314 PGAM1 HEL-S-35|PGAM-B|PGAMA phosphoglycerate mutase 1 protein-coding 1818 chr1 155324331 155324418 + 0 NA promoter-TSS (NM_001039517) promoter-TSS (NM_001039517) -21 NM_001278230 23623 Hs.226499 NM_014328 ENSG00000160753 RUSC1 NESCA RUN and SH3 domain containing 1 protein-coding 21180 chr4 11429064 11429197 + 0 NA promoter-TSS (NM_005114) promoter-TSS (NM_005114) -217 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 143 chr1 9891271 9891375 + 0 NA intron (NM_020248, intron 1 of 5) intron (NM_020248, intron 1 of 5) 18935 NM_020248 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 9238 chr14 66709433 66709537 + 0 NA intron (NM_001024218, intron 2 of 21) MER44C|DNA|TcMar-Tigger 202078 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 29882 chr9 112041791 112042003 + 0 NA exon (NM_022486, exon 16 of 17) exon (NM_022486, exon 16 of 17) 109797 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 7384 chr12 88934544 88934648 + 0 NA Intergenic Intergenic 85096 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 29051 chr9 34178882 34179022 + 0 NA promoter-TSS (NM_001171201) promoter-TSS (NM_001171201) -53 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 15263 chr2 28545931 28546105 + 0 NA intron (NM_153021, intron 14 of 57) intron (NM_153021, intron 14 of 57) -20339 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 8638 chr13 112942749 112942944 + 0 NA Intergenic Intergenic 25792 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 30225 chr9 129332273 129332404 + 0 NA Intergenic Intergenic -4585 NR_120685 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 2822 chr1 225253910 225254014 + 0 NA intron (NM_001373, intron 44 of 83) MLT1J|LTR|ERVL-MaLR 174151 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 17629 chr20 12929232 12929336 + 0 NA intron (NR_109868, intron 4 of 11) MER90a|LTR|ERV1 7679 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 13415 chr18 32552520 32552624 + 0 NA Intergenic Intergenic 40909 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 16999 chr2 207769798 207769902 + 0 NA promoter-TSS (NM_003468) promoter-TSS (NM_003468) -431 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 7703 chr12 116916180 116916310 + 0 NA intron (NM_153348, intron 1 of 10) L1ME3A|LINE|L1 5289 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 2914 chr1 229271101 229271205 + 0 NA promoter-TSS (NR_073545) promoter-TSS (NR_073545) 91 NR_073545 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 1211 chr1 85298282 85298386 + 0 NA Intergenic Intergenic -21430 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 1542 chr1 113904939 113905043 + 0 NA promoter-TSS (NM_001253852) promoter-TSS (NM_001253852) -68 NM_001253852 10717 Hs.515048 NM_006594 ENSG00000134262 AP4B1 BETA-4|CPSQ5|SPG47 adaptor related protein complex 4 beta 1 subunit protein-coding 2102 chr1 175269270 175269436 + 0 NA Intergenic MER41C|LTR|ERV1 -76260 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 29566 chr9 93095492 93095639 + 0 NA promoter-TSS (NM_001318010) promoter-TSS (NM_001318010) -558 NR_134464 84270 Hs.434213 NM_032310 ENSG00000165233 CARD19 BinCARD|C9orf89 caspase recruitment domain family member 19 protein-coding 13981 chr19 5686786 5686873 + 0 NA intron (NM_198707, intron 3 of 6) CpG -3432 NM_033643 25873 Hs.408018 NM_015414 ENSG00000130255 RPL36 L36 ribosomal protein L36 protein-coding 23086 chr5 119333216 119333261 + 0 NA promoter-TSS (NM_001286814) promoter-TSS (NM_001286814) 63 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 15615 chr2 60601349 60601453 + 0 NA Intergenic Intergenic -47903 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 30151 chr9 127612020 127612167 + 0 NA promoter-TSS (NM_003165) promoter-TSS (NM_003165) -114 NM_001032221 6812 Hs.288229 NM_003165 ENSG00000136854 STXBP1 MUNC18-1|NSEC1|P67|RBSEC1|UNC18 syntaxin binding protein 1 protein-coding 19056 chr22 50469995 50470099 + 0 NA intron (NM_002972, intron 1 of 40) intron (NM_002972, intron 1 of 40) 5024 NM_002972 6305 Hs.589924 NM_002972 ENSG00000100241 SBF1 CMT4B3|DENND7A|MTMR5 SET binding factor 1 protein-coding 11682 chr16 78051140 78051169 + 0 NA Intergenic Intergenic 22065 NM_001244755 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 25829 chr7 22083016 22083066 + 0 NA Intergenic CpG -137117 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 6767 chr12 26374274 26374371 + 0 NA intron (NM_002223, intron 55 of 56) L2b|LINE|L2 178749 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 29011 chr9 27528987 27529125 + 0 NA intron (NM_024761, intron 1 of 3) CpG 796 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 22578 chr5 57841736 57841825 + 0 NA Intergenic Intergenic 57382 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 30281 chr9 131658452 131658516 + 0 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 51358 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 23938 chr6 5082735 5082883 + 0 NA intron (NR_134856, intron 2 of 3) L2|LINE|L2 -2677 NM_001145115 648791 Hs.653089 NM_001145115 ENSG00000219607 PPP1R3G - protein phosphatase 1 regulatory subunit 3G protein-coding 18278 chr20 55514628 55514734 + 0 NA Intergenic Intergenic -87484 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 30036 chr9 121213368 121213472 + 0 NA Intergenic Intergenic -11333 NM_016322 51552 Hs.371563 NM_016322 ENSG00000119396 RAB14 FBP|RAB-14 RAB14, member RAS oncogene family protein-coding 7237 chr12 67484060 67484188 + 0 NA Intergenic Intergenic -35958 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LOC100507175 - uncharacterized LOC100507175 ncRNA 29536 chr9 91775608 91775689 + 0 NA intron (NM_004560, intron 2 of 8) intron (NM_004560, intron 2 of 8) -139303 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 30638 chrX 41984820 41984924 + 0 NA Intergenic Intergenic -61838 NM_001126054 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8 calcium/calmodulin dependent serine protein kinase protein-coding 9719 chr14 103161069 103161194 + 0 NA Intergenic Intergenic 27897 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 24536 chr6 41723651 41723755 + 0 NA intron (NM_001167827, intron 1 of 8) intron (NM_001167827, intron 1 of 8) 10698 NM_001271945 7942 Hs.485360 NM_007162 ENSG00000112561 TFEB ALPHATFEB|BHLHE35|TCFEB transcription factor EB protein-coding 8257 chr13 49247822 49247949 + 0 NA promoter-TSS (NM_001193478) promoter-TSS (NM_001193478) -26 NM_001193478 81602 Hs.388220 NM_030911 ENSG00000102543 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 19679 chr3 81761074 81761234 + 0 NA intron (NM_000158, intron 1 of 15) intron (NM_000158, intron 1 of 15) 645 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 14919 chr2 2916707 2916854 + 0 NA intron (NR_110228, intron 5 of 6) intron (NR_110228, intron 5 of 6) 209246 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 22686 chr5 69369732 69369848 + 0 NA promoter-TSS (NM_001278622) promoter-TSS (NM_001278622) -22 NM_133338 5884 Hs.16184 NM_002873 ENSG00000152942 RAD17 CCYC|HRAD17|R24L|RAD17SP|RAD24 RAD17 checkpoint clamp loader component protein-coding 8149 chr13 40445652 40445735 + 0 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 35313 NR_024505 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 - long intergenic non-protein coding RNA 598 ncRNA 12341 chr17 33284159 33284298 + 0 NA intron (NM_001094, intron 1 of 9) MamRep434|DNA|TcMar-Tigger 8760 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 17463 chr20 2315132 2315290 + 0 NA intron (NM_003245, intron 5 of 12) intron (NM_003245, intron 5 of 12) 19244 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE transglutaminase 3 protein-coding 11488 chr16 67018060 67018204 + 0 NA Intergenic Intergenic -11015 NM_001755 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor beta subunit protein-coding 20389 chr3 150449540 150449694 + 0 NA intron (NR_130136, intron 3 of 4) L1MC4a|LINE|L1 41282 NM_014779 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 9915 chr15 40103588 40103701 + 0 NA intron (NM_001003943, intron 3 of 3) intron (NM_001003943, intron 3 of 3) 2442 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 30606 chrX 37454994 37455098 + 0 NA 3' UTR (NM_000950, exon 5 of 5) 3' UTR (NM_000950, exon 5 of 5) 105716 NM_001173489 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 10125 chr15 52653485 52653589 + 0 NA intron (NM_019600, intron 2 of 12) MIRb|SINE|MIR -1487 NM_001286495 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 8445 chr13 94549734 94549816 + 0 NA promoter-TSS (NM_001322185) promoter-TSS (NM_001322185) -362 NM_001322183 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 3910 chr10 73997964 73998105 + 0 NA promoter-TSS (NM_003373) promoter-TSS (NM_003373) -80 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 28855 chr8 144798904 144798972 + 0 NA promoter-TSS (NM_001317936) promoter-TSS (NM_001317936) 62 NM_213605 340385 Hs.521942 NM_213605 ENSG00000197363 ZNF517 - zinc finger protein 517 protein-coding 16861 chr2 196160214 196160318 + 0 NA intron (NM_004226, intron 2 of 7) intron (NM_004226, intron 2 of 7) 11346 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 26311 chr7 55255596 55255744 + 0 NA promoter-TSS (NR_110426) promoter-TSS (NR_110426) -35 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 5840 chr11 92380988 92381092 + 0 NA intron (NM_001008781, intron 1 of 24) L1MB5|LINE|L1 28944 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 6230 chr11 122070105 122070252 + 0 NA intron (NR_137178, intron 1 of 4) intron (NR_137178, intron 1 of 4) 29666 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 21936 chr4 156347495 156347675 + 0 NA Intergenic L1M4b|LINE|L1 -393689 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 20395 chr3 150603156 150603282 + 0 NA promoter-TSS (NM_016275) promoter-TSS (NM_016275) -60 NM_016275 51714 Hs.369052 NM_016275 ENSG00000198843 SELENOT SELT selenoprotein T protein-coding 22015 chr4 172996674 172996778 + 0 NA intron (NM_001034845, intron 10 of 12) intron (NM_001034845, intron 10 of 12) -172027 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 28152 chr8 88237823 88237973 + 0 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 89590 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 13029 chr17 75996821 75996992 + 0 NA intron (NR_037709, intron 3 of 9) intron (NR_037709, intron 3 of 9) -4000 NM_001258 1018 Hs.706766 NM_001258 ENSG00000250506 CDK3 - cyclin dependent kinase 3 protein-coding 26637 chr7 96219606 96219710 + 0 NA promoter-TSS (NR_030322) promoter-TSS (NR_030322) 98 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 25573 chr7 3404633 3404737 + 0 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 103237 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 857 chr1 50620930 50621165 + 0 NA intron (NM_007051, intron 8 of 18) L1PA16|LINE|L1 -197600 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 707 chr1 40886817 40886921 + 0 NA Intergenic MIRb|SINE|MIR -24523 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 5738 chr11 82634355 82634356 + 0 NA Intergenic MIRc|SINE|MIR 99509 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 26297 chr7 54858217 54858313 + 0 NA Intergenic Intergenic 98952 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 8475 chr13 97568021 97568125 + 0 NA Intergenic LTR67B|LTR|ERVL 133852 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 17683 chr20 17562952 17563056 + 0 NA 5' UTR (NM_001278608, exon 2 of 10) 5' UTR (NM_001278608, exon 2 of 10) -4044 NM_001161705 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 13560 chr18 49732078 49732096 + 0 NA Intergenic L2c|LINE|L2 81794 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 25151 chr6 130474060 130474164 + 0 NA Intergenic MLT2F|LTR|ERVL 36995 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 13611 chr18 54767251 54767355 + 0 NA Intergenic Intergenic -61174 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 10649 chr15 88659381 88659485 + 0 NA Intergenic Intergenic 20690 NM_002201 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 27888 chr8 57336709 57336777 + 0 NA Intergenic Intergenic -7044 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 9880 chr15 37059136 37059171 + 0 NA intron (NM_170676, intron 7 of 11) intron (NM_170676, intron 7 of 11) 39208 NM_172315 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 21842 chr4 141220841 141220998 + 0 NA promoter-TSS (NM_001292002) promoter-TSS (NM_001292002) 32 NM_001292002 27309 Hs.120766 NM_014487 ENSG00000109445 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 10980 chr16 8776244 8776348 + 0 NA intron (NM_001127448, intron 13 of 15) intron (NM_001127448, intron 13 of 15) 21352 NM_015421 25880 Hs.513330 NM_015421 ENSG00000184857 TMEM186 C16orf51 transmembrane protein 186 protein-coding 29518 chr9 90970777 90970932 + 0 NA Intergenic Intergenic 104278 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 20414 chr3 151890891 151890908 + 0 NA intron (NR_110202, intron 1 of 3) intron (NR_110202, intron 1 of 3) 17256 NM_033050 56670 Hs.133181 NM_033050 ENSG00000198829 SUCNR1 GPR91 succinate receptor 1 protein-coding 2896 chr1 228487187 228487333 + 0 NA promoter-TSS (NM_001010858) promoter-TSS (NM_001010858) -107 NM_001010858 149603 Hs.356377 NM_001010858 ENSG00000168159 RNF187 RACO-1|RACO1 ring finger protein 187 protein-coding 12156 chr17 17205460 17205564 + 0 NA intron (NM_178836, intron 1 of 1) CpG 820 NM_178836 201164 Hs.729079 NM_178836 ENSG00000179598 PLD6 ZUC phospholipase D family member 6 protein-coding 27229 chr7 151232380 151232532 + 0 NA promoter-TSS (NM_001284295) promoter-TSS (NM_001284295) -33 NM_019015 54480 Hs.647084 NM_019015 ENSG00000033100 CHPF2 CSGLCA-T|CSGlcAT|ChSy-3|chPF-2 chondroitin polymerizing factor 2 protein-coding 23979 chr6 7673156 7673260 + 0 NA Intergenic Intergenic -52891 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 23852 chr6 225205 225309 + 0 NA Intergenic Intergenic -19773 NR_126020 285766 Hs.657946 NR_126020 ENSG00000263667 LOC285766 - uncharacterized LOC285766 ncRNA 9777 chr14_GL000225v1_random 138589 138693 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 29225 chr9 72844159 72844237 + 0 NA Intergenic L1PB1|LINE|L1 29911 NR_121180 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 4884 chr11 14300793 14300926 + 0 NA intron (NM_001177314, intron 1 of 5) intron (NM_001177314, intron 1 of 5) 57626 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 27521 chr8 22743841 22743945 + 0 NA intron (NM_144962, intron 4 of 6) AmnSINE1|SINE|5S-Deu-L2 -50591 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 7079 chr12 53868569 53868718 + 0 NA Intergenic Intergenic -70149 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 7072 chr12 53696442 53696514 + 0 NA Intergenic Intergenic -19750 NM_001002031 517 Hs.524464 NM_005176 ENSG00000135390 ATP5G2 ATP5A ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) protein-coding 25762 chr7 17533137 17533352 + 0 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 25665 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 24235 chr6 26382997 26383152 + 0 NA promoter-TSS (NM_006995) promoter-TSS (NM_006995) -22 NM_001197238 10385 Hs.373938 NM_006995 ENSG00000124508 BTN2A2 BT2.2|BTF2|BTN2.2 butyrophilin subfamily 2 member A2 protein-coding 19032 chr22 46658376 46658526 + 0 NA intron (NM_015124, intron 4 of 18) intron (NM_015124, intron 4 of 18) 38049 NM_015124 23151 Hs.475150 NM_015124 ENSG00000075240 GRAMD4 DIP|dA59H18.1|dJ439F8.1 GRAM domain containing 4 protein-coding 14394 chr19 36379183 36379300 + 0 NA promoter-TSS (NM_001297619) promoter-TSS (NM_001297619) -38 NM_001297619 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 25093 chr6 123802657 123802840 + 0 NA Intergenic Intergenic -1098 NM_153355 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 23495 chr5 149675746 149675882 + 0 NA Intergenic Intergenic -54438 NM_001172698 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 2933 chr1 230868541 230868571 + 0 NA promoter-TSS (NM_032800) promoter-TSS (NM_032800) 0 NM_032800 84886 Hs.520494 NM_032800 ENSG00000119280 C1orf198 - chromosome 1 open reading frame 198 protein-coding 22775 chr5 79235930 79236086 + 0 NA promoter-TSS (NM_152405) promoter-TSS (NM_152405) -94 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 12620 chr17 48026651 48026769 + 0 NA intron (NM_016429, intron 8 of 8) intron (NM_016429, intron 8 of 8) 10537 NR_029687 406943 NR_029687 ENSG00000207947 MIR152 MIRN152|mir-152 microRNA 152 ncRNA 29772 chr9 107275003 107275027 + 0 NA Intergenic Intergenic -8221 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 11872 chr17 729021 729125 + 0 NA Intergenic Intergenic -3473 NM_001318008 79850 Hs.154396 NM_024792 ENSG00000167695 FAM57A CT120 family with sequence similarity 57 member A protein-coding 15667 chr2 64767865 64767982 + 0 NA Intergenic CpG 95708 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 10877 chr16 2047724 2047791 + 0 NA promoter-TSS (NM_000548) promoter-TSS (NM_000548) 112 NM_001318193 4913 Hs.66196 NM_002528 ENSG00000065057 NTHL1 FAP3|NTH1|OCTS3|hNTH1 nth like DNA glycosylase 1 protein-coding 2111 chr1 177181923 177182027 + 0 NA intron (NM_021165, intron 1 of 7) CpG 10587 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 30062 chr9 122465194 122465298 + 0 NA Intergenic MER54B|LTR|ERVL 12680 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 23370 chr5 141557877 141557975 + 0 NA promoter-TSS (NR_038333) promoter-TSS (NR_038333) -385 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 20133 chr3 129651792 129651896 + 0 NA intron (NM_001128224, intron 5 of 5) intron (NM_001128224, intron 5 of 5) 36888 NR_033361 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 3482 chr10 28254764 28254774 + 0 NA intron (NM_001318170, intron 1 of 16) intron (NM_001318170, intron 1 of 16) 27328 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 19825 chr3 107797743 107797847 + 0 NA intron (NM_001276286, intron 14 of 16) intron (NM_001276286, intron 14 of 16) 80273 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 14644 chr19 48445738 48445842 + 0 NA promoter-TSS (NM_031485) promoter-TSS (NM_031485) 17 NM_031485 83743 Hs.400625 NM_031485 ENSG00000105447 GRWD1 CDW4|GRWD|RRB1|WDR28 glutamate rich WD repeat containing 1 protein-coding 5682 chr11 76152244 76152348 + 0 NA Intergenic Intergenic 54234 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 14199 chr19 15223508 15223542 + 0 NA Intergenic CpG 8895 NM_024794 79852 Hs.156457 NM_024794 ENSG00000105131 EPHX3 ABHD9|EH3 epoxide hydrolase 3 protein-coding 30876 chrX 100748222 100748326 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -16126 NM_001129896 94121 Hs.592224 NM_080737 ENSG00000102362 SYTL4 SLP4 synaptotagmin like 4 protein-coding 29626 chr9 96420538 96420753 + 0 NA Intergenic Intergenic -2258 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 16387 chr2 138122574 138122576 + 0 NA Intergenic Intergenic 20691 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 27963 chr8 66026601 66026732 + 0 NA intron (NM_033105, intron 1 of 5) intron (NM_033105, intron 1 of 5) 5110 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 15149 chr2 20356207 20356362 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -5434 NM_015317 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 8412 chr13 79525599 79525703 + 0 NA intron (NM_019080, intron 2 of 7) Tigger7|DNA|TcMar-Tigger -41076 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 7147 chr12 56957452 56957566 + 0 NA 5' UTR (NM_001320108, exon 1 of 3) 5' UTR (NM_001320108, exon 1 of 3) 1865 NM_001320108 8608 Hs.134958 NM_003708 ENSG00000139547 RDH16 RODH-4|SDR9C8 retinol dehydrogenase 16 (all-trans) protein-coding 18308 chr20 57323117 57323221 + 0 NA Intergenic Intergenic -1578 NR_036219 100422883 NR_036219 ENSG00000266666 MIR4325 - microRNA 4325 ncRNA 23736 chr5 172905065 172905234 + 0 NA intron (NM_001031711, intron 3 of 9) intron (NM_001031711, intron 3 of 9) -53580 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 9724 chr14 103385307 103385308 + 0 NA promoter-TSS (NM_001128918) promoter-TSS (NM_001128918) -57 NM_001128919 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a microtubule affinity regulating kinase 3 protein-coding 23498 chr5 149747603 149747738 + 0 NA intron (NM_133263, intron 1 of 11) intron (NM_133263, intron 1 of 11) 14845 NR_029870 494327 NR_029870 ENSG00000199047 MIR378A MIR378|MIRN378|hsa-mir-378|hsa-mir-378a|miRNA378 microRNA 378a ncRNA 9193 chr14 64060251 64060428 + 0 NA intron (NM_182914, intron 49 of 115) L1M1|LINE|L1 34786 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 12414 chr17 38414796 38414940 + 0 NA Intergenic Intergenic -13608 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 19037 chr22 46830088 46830269 + 0 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 56251 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 28546 chr8 122134808 122134928 + 0 NA Intergenic Intergenic 433776 NR_131202 105375734 Hs.628341 NR_131202 LOC105375734 - uncharacterized LOC105375734 ncRNA 3504 chr10 29839931 29840115 + 0 NA Intergenic Intergenic -103022 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 26109 chr7 41005437 41005541 + 0 NA Intergenic Intergenic -25550 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 25407 chr6 157764610 157764790 + 0 NA Intergenic Intergenic -58471 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 15585 chr2 55992714 55992818 + 0 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) -3707 NR_029629 406998 NR_029629 ENSG00000207798 MIR216A MIR216|MIRN216|MIRN216A|miRNA216|mir-216|mir-216a microRNA 216a ncRNA 15932 chr2 86695170 86695274 + 0 NA intron (NM_001198954, intron 1 of 7) LTR10A|LTR|ERV1 -25069 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 8552 chr13 105925614 105925835 + 0 NA Intergenic Intergenic 218894 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 12860 chr17 65056655 65056889 + 0 NA promoter-TSS (NM_006572) promoter-TSS (NM_006572) 30 NM_006572 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 852 chr1 48472203 48472343 + 0 NA promoter-TSS (NM_001286238) promoter-TSS (NM_001286238) -65 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 10634 chr15 87267982 87268086 + 0 NA Intergenic Intergenic -279608 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 15446 chr2 43420503 43420654 + 0 NA intron (NR_144316, intron 28 of 36) intron (NR_144316, intron 28 of 36) 175396 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA, armadillo repeat containing protein-coding 24584 chr6 43143597 43143659 + 0 NA intron (NM_001270398, intron 14 of 19) intron (NM_001270398, intron 14 of 19) -27667 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 4341 chr10 110398830 110398984 + 0 NA Intergenic Intergenic -93958 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 26693 chr7 100101469 100101642 + 0 NA promoter-TSS (NM_182776) promoter-TSS (NM_182776) 48 NM_004722 9179 Hs.632317 NM_004722 ENSG00000221838 AP4M1 CPSQ3|MU-4|MU-ARP2|SPG50 adaptor related protein complex 4 mu 1 subunit protein-coding 24574 chr6 42901581 42901733 + 0 NA Intergenic HERVK-int|LTR|ERVK -10841 NM_001008739 441150 Hs.571098 NM_001008739 ENSG00000221821 C6orf226 - chromosome 6 open reading frame 226 protein-coding 5732 chr11 80699934 80700085 + 0 NA Intergenic MIR3|SINE|MIR 62794 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 30546 chrX 20266882 20266973 + 0 NA promoter-TSS (NM_004586) promoter-TSS (NM_004586) -295 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 21606 chr4 98661830 98661934 + 0 NA Intergenic L2c|LINE|L2 -3221 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 11344 chr16 52813336 52813440 + 0 NA Intergenic Intergenic -206413 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility candidate 16 (non-protein coding) ncRNA 21780 chr4 126850458 126850562 + 0 NA Intergenic Intergenic -782422 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU INT|PDZD6|PDZK6 inturned planar cell polarity protein protein-coding 14023 chr19 7784224 7784257 + 0 NA Intergenic Intergenic -3244 NR_002931 440508 Hs.568222 NR_002931 CLEC4GP1 - C-type lectin domain family 4 member G pseudogene 1 pseudo 7690 chr12 114684296 114684490 + 0 NA promoter-TSS (NM_016569) promoter-TSS (NM_016569) -229 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 2968 chr1 233327476 233327639 + 0 NA promoter-TSS (NM_032435) promoter-TSS (NM_032435) -211 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 KIAA1804|MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 10088 chr15 51121253 51121357 + 0 NA Intergenic MIR3|SINE|MIR -16029 NM_207381 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 9681 chr14 100988670 100988774 + 0 NA promoter-TSS (NR_003221) promoter-TSS (NR_003221) -408 NR_003221 767609 NR_003221 ENSG00000200480 SNORD114-28 14q(II-28) small nucleolar RNA, C/D box 114-28 snoRNA 11581 chr16 70697150 70697271 + 0 NA exon (NM_018052, exon 16 of 19) exon (NM_018052, exon 16 of 19) -11159 NM_138383 92154 Hs.432387 NM_138383 ENSG00000132613 MTSS1L ABBA|ABBA-1|ABBA1 MTSS1L, I-BAR domain containing protein-coding 22117 chr4 186191534 186191624 + 0 NA promoter-TSS (NM_207352) promoter-TSS (NM_207352) 59 NM_207352 285440 Hs.587231 NM_207352 ENSG00000145476 CYP4V2 BCD|CYP4AH1 cytochrome P450 family 4 subfamily V member 2 protein-coding 5448 chr11 64917303 64917457 + 0 NA promoter-TSS (NM_015104) promoter-TSS (NM_015104) -130 NM_015104 23130 Hs.370671 NM_015104 ENSG00000110046 ATG2A - autophagy related 2A protein-coding 15387 chr2 38690956 38691107 + 0 NA intron (NM_138801, intron 4 of 6) intron (NM_138801, intron 4 of 6) 25121 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 20844 chr3 185362966 185363115 + 0 NA promoter-TSS (NM_004721) promoter-TSS (NM_004721) -8 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 24590 chr6 43427448 43427547 + 0 NA promoter-TSS (NM_001198934) promoter-TSS (NM_001198934) -57 NM_001198934 89845 Hs.55879 NM_033450 ENSG00000124574 ABCC10 EST182763|MRP7|SIMRP7 ATP binding cassette subfamily C member 10 protein-coding 25676 chr7 12066140 12066244 + 0 NA Intergenic LTR10A|LTR|ERV1 -145030 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B - transmembrane protein 106B protein-coding 10130 chr15 53197494 53197598 + 0 NA Intergenic Intergenic 343306 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 21255 chr4 24753634 24753770 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -41761 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3, extracellular protein-coding 9035 chr14 54565984 54566138 + 0 NA Intergenic CpG -1551 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 31214 chrY 11327597 11327751 + 0 NA Intergenic BSR/Beta|Satellite|Satellite 1093916 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 25415 chr6 158460760 158460877 + 0 NA intron (NM_001007466, intron 5 of 12) intron (NM_001007466, intron 5 of 12) -75618 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 24973 chr6 106858793 106858855 + 0 NA Intergenic LTR8|LTR|ERV1 -71399 NR_033557 100422737 Hs.634681 NR_033557 ENSG00000235142 LOC100422737 - uncharacterized LOC100422737 ncRNA 19206 chr3 15065294 15065427 + 0 NA promoter-TSS (NM_022497) promoter-TSS (NM_022497) -23 NR_135247 64432 Hs.657764 NM_022497 ENSG00000131368 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 2975 chr1 233707695 233707815 + 0 NA Intergenic Intergenic 83603 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 6734 chr12 22577777 22577881 + 0 NA Intergenic FAM|SINE|Alu -33283 NM_014802 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 14156 chr19 13150318 13150435 + 0 NA promoter-TSS (NM_001271609) promoter-TSS (NM_001271609) -2 NM_001271611 8677 Hs.43812 NM_003765 ENSG00000104915 STX10 SYN10|hsyn10 syntaxin 10 protein-coding 14324 chr19 29664181 29664253 + 0 NA Intergenic Intergenic -1203 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 11287 chr16 47141820 47141998 + 0 NA intron (NM_001201477, intron 1 of 8) intron (NM_001201477, intron 1 of 8) 2116 NM_018092 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 14802 chr19 55207175 55207385 + 0 NA intron (NM_001161440, intron 1 of 17) intron (NM_001161440, intron 1 of 17) 2226 NM_002842 5794 Hs.179770 NM_002842 ENSG00000080031 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type H protein-coding 4691 chr11 2093294 2093363 + 0 NA Intergenic Intergenic 40881 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 28237 chr8 95225641 95225820 + 0 NA Intergenic Intergenic -9356 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 31181 chrX 154397649 154397760 + 0 NA promoter-TSS (NM_001256577) promoter-TSS (NM_001256577) -361 NM_001256580 6134 Hs.534404 NM_006013 ENSG00000147403 RPL10 AUTSX5|DXS648|DXS648E|L10|NOV|QM ribosomal protein L10 protein-coding 1846 chr1 156212916 156213052 + 0 NA promoter-TSS (NM_001199653) promoter-TSS (NM_001199653) -4 NM_001199654 11243 Hs.530479 NM_007221 ENSG00000160783 PMF1 - polyamine modulated factor 1 protein-coding 11779 chr16 84970624 84970728 + 0 NA Intergenic Intergenic 40859 NM_017740 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 23510 chr5 150320257 150320411 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -17372 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 17202 chr2 226411835 226411998 + 0 NA Intergenic Intergenic 246877 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 15678 chr2 65227640 65227744 + 0 NA promoter-TSS (NM_001005386) promoter-TSS (NM_001005386) -3 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 ARP2 actin related protein 2 homolog protein-coding 9064 chr14 55458963 55459067 + 0 NA Intergenic Intergenic -18470 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 133 chr1 9539293 9539387 + 0 NA promoter-TSS (NM_032315) promoter-TSS (NM_032315) -129 NM_032315 84275 Hs.568613 NM_032315 ENSG00000171612 SLC25A33 BMSC-MCP|PNC1 solute carrier family 25 member 33 protein-coding 19426 chr3 43999150 43999282 + 0 NA Intergenic CpG -114996 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 13939 chr19 3971192 3971335 + 0 NA promoter-TSS (NM_001348) promoter-TSS (NM_001348) -140 NM_001348 1613 Hs.631844 NM_001348 ENSG00000167657 DAPK3 DLK|ZIP|ZIPK death associated protein kinase 3 protein-coding 21470 chr4 76949756 76949821 + 0 NA promoter-TSS (NM_018243) promoter-TSS (NM_018243) 74 NM_018243 55752 Hs.128199 NM_018243 ENSG00000138758 SEPT11 - septin 11 protein-coding 18235 chr20 52923243 52923290 + 0 NA Intergenic Intergenic -49141 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 22635 chr5 65624911 65625042 + 0 NA promoter-TSS (NM_001656) promoter-TSS (NM_001656) 245 NR_003545 80006 Hs.591760 NM_024941 ENSG00000113597 TRAPPC13 C5orf44 trafficking protein particle complex 13 protein-coding 14178 chr19 14081291 14081438 + 0 NA TTS (NM_001277378) TTS (NM_001277378) 4431 NM_001277378 646457 Hs.569971 NM_001277378 ENSG00000188032 C19orf67 - chromosome 19 open reading frame 67 protein-coding 20978 chr3 192597593 192597747 + 0 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 82648 NR_046598 100873988 Hs.628012 NR_046598 FGF12-AS3 - FGF12 antisense RNA 3 ncRNA 12107 chr17 10815451 10815555 + 0 NA TTS (NR_073458) TTS (NR_073458) -11404 NR_036581 100289255 Hs.306721 NR_036581 ENSG00000263429 LINC00675 - long intergenic non-protein coding RNA 675 ncRNA 20244 chr3 138594264 138594425 + 0 NA promoter-TSS (NM_001320598) promoter-TSS (NM_001320598) 39 NM_001320599 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 15055 chr2 14297474 14297595 + 0 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 103424 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 22301 chr5 17883169 17883273 + 0 NA intron (NR_134286, intron 5 of 7) L1PBa|LINE|L1 75947 NR_134287 646241 Hs.407197 NR_134286 LOC646241 - uncharacterized LOC646241 ncRNA 27917 chr8 60913957 60914061 + 0 NA Intergenic Intergenic 53739 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 6623 chr12 12803276 12803366 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -10025 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 7567 chr12 104603092 104603157 + 0 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 11491 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 9371 chr14 74566890 74567018 + 0 NA intron (NM_000428, intron 3 of 35) intron (NM_000428, intron 3 of 35) 45377 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 25326 chr6 150005325 150005417 + 0 NA promoter-TSS (NR_024045) promoter-TSS (NR_024045) -227 NR_024045 646024 Hs.560537 NR_024045 ENSG00000218358 RAET1K - retinoic acid early transcript 1K pseudogene pseudo 24635 chr6 47042309 47042413 + 0 NA promoter-TSS (NM_025048) promoter-TSS (NM_025048) 2 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 8770 chr14 24678999 24679180 + 0 NA Intergenic Intergenic -44820 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 25637 chr7 6577360 6577499 + 0 NA promoter-TSS (NM_001134387) promoter-TSS (NM_001134387) -5 NM_018106 55146 Hs.5268 NM_018106 ENSG00000136247 ZDHHC4 ZNF374 zinc finger DHHC-type containing 4 protein-coding 4038 chr10 88385635 88385739 + 0 NA intron (NM_001031709, intron 4 of 6) intron (NM_001031709, intron 4 of 6) 197638 NM_018363 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 28214 chr8 94417841 94417995 + 0 NA intron (NM_012415, intron 3 of 14) intron (NM_012415, intron 3 of 14) 19034 NM_001205263 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B (S. cerevisiae) protein-coding 9483 chr14 84465932 84466064 + 0 NA Intergenic Intergenic -921277 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 29790 chr9 108049227 108049353 + 0 NA Intergenic Intergenic -559570 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 29889 chr9 112241764 112241815 + 0 NA intron (NM_005156, intron 8 of 14) L1ME1|LINE|L1 -66492 NM_001282640 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 2225 chr1 184491665 184491769 + 0 NA intron (NM_030806, intron 2 of 5) intron (NM_030806, intron 2 of 5) 104701 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 12917 chr17 69874252 69874356 + 0 NA intron (NR_109972, intron 4 of 4) L1MB7|LINE|L1 -87403 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 20081 chr3 126472456 126472515 + 0 NA intron (NM_001040653, intron 1 of 5) MER106B|DNA|hAT-Charlie 3434 NR_104249 79364 Hs.440049 NM_025112 ENSG00000070476 ZXDC ZXDL ZXD family zinc finger C protein-coding 17688 chr20 18001582 18001686 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -32643 NM_152227 27131 Hs.316890 NM_014426 ENSG00000089006 SNX5 - sorting nexin 5 protein-coding 30 chr1 1778883 1779037 + 0 NA promoter-TSS (NM_023018) promoter-TSS (NM_023018) -102 NM_001198993 65220 Hs.654792 NM_023018 ENSG00000008130 NADK dJ283E3.1 NAD kinase protein-coding 6087 chr11 112131804 112131908 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 32261 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 29901 chr9 112917756 112917860 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -26895 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 22710 chr5 73303596 73303700 + 0 NA Intergenic CpG -101687 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 13896 chr19 2456981 2457130 + 0 NA promoter-TSS (NM_032737) promoter-TSS (NM_032737) -87 NM_032737 84823 Hs.538286 NM_032737 ENSG00000176619 LMNB2 EPM9|LAMB2|LMN2 lamin B2 protein-coding 11713 chr16 81181380 81181517 + 0 NA promoter-TSS (NM_001278425) promoter-TSS (NM_001278425) -86 NM_001278423 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 12398 chr17 37067953 37068024 + 0 NA Intergenic Intergenic 34243 NR_036056 100422969 NR_036056 ENSG00000276326 MIR2909 - microRNA 2909 ncRNA 19705 chr3 94162813 94162917 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -99642 NM_001195643 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 618 chr1 35883095 35883173 + 0 NA promoter-TSS (NM_001317122) promoter-TSS (NM_001317122) -61 NM_012199 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute 1, RISC catalytic component protein-coding 2151 chr1 180168137 180168267 + 0 NA intron (NM_001004128, intron 2 of 12) intron (NM_001004128, intron 2 of 12) 13369 NM_001004128 5768 Hs.744925 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 11350 chr16 53080753 53080815 + 0 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) 25751 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 21479 chr4 77880875 77880998 + 0 NA intron (NM_020236, intron 2 of 8) MLT1H|LTR|ERVL-MaLR 18285 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 848 chr1 48007222 48007301 + 0 NA Intergenic MamSINE1|SINE|tRNA-RTE -10371 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13807 chr18 77101442 77101570 + 0 NA intron (NM_001025100, intron 2 of 3) intron (NM_001025100, intron 2 of 3) 31312 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 18884 chr22 37953553 37953657 + 0 NA promoter-TSS (NM_032561) promoter-TSS (NM_032561) 42 NM_032561 84645 Hs.517612 NM_032561 ENSG00000128346 C22orf23 EVG1|dJ1039K5.6 chromosome 22 open reading frame 23 protein-coding 15562 chr2 54723417 54723521 + 0 NA Intergenic CpG -1543 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - echinoderm microtubule associated protein like 6 protein-coding 16911 chr2 200757091 200757195 + 0 NA intron (NR_135012, intron 17 of 30) intron (NR_135012, intron 17 of 30) -21966 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LINC01792 - long intergenic non-protein coding RNA 1792 ncRNA 8843 chr14 34462382 34462500 + 0 NA promoter-TSS (NM_138288) promoter-TSS (NM_138288) -179 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 26762 chr7 104883905 104884013 + 0 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 42686 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 16671 chr2 173049436 173049540 + 0 NA intron (NM_001100397, intron 27 of 27) intron (NM_001100397, intron 27 of 27) -26349 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 6472 chr12 4308000 4308124 + 0 NA Intergenic Intergenic -13131 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 11519 chr16 68085254 68085403 + 0 NA promoter-TSS (NM_173163) promoter-TSS (NM_173163) -38 NM_173163 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NFAT4|NFATX nuclear factor of activated T-cells 3 protein-coding 1904 chr1 159946021 159946125 + 0 NA promoter-TSS (NM_001135050) promoter-TSS (NM_001135050) -477 NM_001135050 57549 Hs.591472 NM_020789 ENSG00000085552 IGSF9 FP18798|IGSF9A|Nrt1 immunoglobulin superfamily member 9 protein-coding 11413 chr16 57061371 57061475 + 0 NA intron (NM_001330552, intron 29 of 47) intron (NM_001330552, intron 29 of 47) -31120 NM_152727 221184 Hs.339809 NM_152727 ENSG00000140848 CPNE2 COPN2|CPN2 copine 2 protein-coding 22800 chr5 81751394 81751509 + 0 NA promoter-TSS (NM_001256732) promoter-TSS (NM_001256732) -198 NM_001345886 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 5043 chr11 27213387 27213491 + 0 NA intron (NR_125766, intron 2 of 4) intron (NR_125766, intron 2 of 4) 5329 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 14049 chr19 9324191 9324335 + 0 NA promoter-TSS (NM_001202425) promoter-TSS (NM_001202425) 37 NM_001172650 100529215 Hs.728944 NM_001172650 ENSG00000188629 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 26983 chr7 129185106 129185273 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -3683 NM_005631 6608 Hs.437846 NM_005631 ENSG00000128602 SMO CRJS|FZD11|Gx|SMOH smoothened, frizzled class receptor protein-coding 27240 chr7 151696371 151696475 + 0 NA intron (NM_016203, intron 3 of 15) intron (NM_016203, intron 3 of 15) 39891 NM_001304527 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 13435 chr18 35344445 35344549 + 0 NA promoter-TSS (NM_001308123) promoter-TSS (NM_001308123) -30 NM_001308123 7572 Hs.514802 NM_006965 ENSG00000172466 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 29932 chr9 114677533 114677661 + 0 NA intron (NR_144867, intron 1 of 4) intron (NR_144867, intron 1 of 4) 4492 NR_144867 100505478 Hs.200101 NM_001199233 ENSG00000230601 LOC100505478 - uncharacterized LOC100505478 protein-coding 6856 chr12 33795721 33795825 + 0 NA Intergenic Intergenic -226508 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 8674 chr14 20989652 20989756 + 0 NA promoter-TSS (NM_001029991) promoter-TSS (NM_001029991) -102 NM_022734 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 22404 chr5 38845897 38845925 + 0 NA promoter-TSS (NM_001323504) promoter-TSS (NM_001323504) 53 NM_001323507 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 5758 chr11 83241473 83241577 + 0 NA intron (NM_182603, intron 9 of 9) L2a|LINE|L2 44882 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 15989 chr2 97869512 97869678 + 0 NA intron (NM_015348, intron 4 of 40) intron (NM_015348, intron 4 of 40) 126296 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 1492 chr1 110338755 110338898 + 0 NA promoter-TSS (NM_022768) promoter-TSS (NM_022768) 345 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 LOC440600 - uncharacterized LOC440600 ncRNA 2662 chr1 214216903 214217007 + 0 NA Intergenic L2b|LINE|L2 -64267 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 16855 chr2 192499683 192499683 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -250162 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1, prostate-specific transcript (non-protein coding) ncRNA 23083 chr5 119287907 119288023 + 0 NA intron (NM_001077654, intron 1 of 1) intron (NM_001077654, intron 1 of 1) 19273 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 13050 chr17 76726619 76726783 + 0 NA promoter-TSS (NM_001302705) promoter-TSS (NM_001302705) 98 NM_015167 23210 Hs.514505 NM_015167 ENSG00000070495 JMJD6 PSR|PTDSR|PTDSR1 arginine demethylase and lysine hydroxylase protein-coding 30460 chrX 7084186 7084290 + 0 NA intron (NM_001178136, intron 2 of 3) intron (NM_001178136, intron 2 of 3) -63014 NM_001320750 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase (microsomal), isozyme S protein-coding 30843 chrX 77442823 77442959 + 0 NA Intergenic Intergenic -4784 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 19287 chr3 28241581 28241621 + 0 NA promoter-TSS (NM_182523) promoter-TSS (NM_182523) -32 NM_001331187 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 11342 chr16 51840094 51840198 + 0 NA Intergenic Intergenic 77627 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 13290 chr18 21111966 21112070 + 0 NA promoter-TSS (NM_005406) promoter-TSS (NM_005406) -167 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 16155 chr2 112706330 112706478 + 0 NA Intergenic Intergenic 58273 NR_130712 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 28559 chr8 122917817 122917921 + 0 NA intron (NM_014943, intron 2 of 3) MER117|DNA|hAT-Charlie 124554 NM_001330601 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 1100 chr1 69109431 69109535 + 0 NA Intergenic UCON1|Unknown|Unknown -457702 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 15326 chr2 32805249 32805418 + 0 NA intron (NM_017735, intron 16 of 19) intron (NM_017735, intron 16 of 19) -20110 NR_027098 285045 Hs.434660 NR_027098 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 9373 chr14 74620590 74620694 + 0 NA Intergenic Intergenic -8311 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 19310 chr3 32106418 32106557 + 0 NA promoter-TSS (NM_015141) promoter-TSS (NM_015141) -24 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1-like protein-coding 31219 chrY 11747636 11747782 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 673881 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 17854 chr20 31739120 31739254 + 0 NA promoter-TSS (NM_012112) promoter-TSS (NM_012112) 86 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2, microtubule nucleation factor protein-coding 8140 chr13 39655603 39655743 + 0 NA promoter-TSS (NM_020751) promoter-TSS (NM_020751) 46 NM_001145079 57511 Hs.507805 NM_020751 ENSG00000133103 COG6 CDG2L|COD2|SHNS component of oligomeric golgi complex 6 protein-coding 1719 chr1 151606611 151606715 + 0 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -5523 NM_001330723 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin family member 27 protein-coding 8790 chr14 31080216 31080320 + 0 NA intron (NM_001254726, intron 4 of 4) L1ME4a|LINE|L1 53625 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 sigma 1 subunit protein-coding 15104 chr2 17754011 17754065 + 0 NA promoter-TSS (NM_001142286) promoter-TSS (NM_001142286) -122 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1, Holliday junction 5' flap endonuclease protein-coding 7505 chr12 99382112 99382195 + 0 NA intron (NM_152788, intron 12 of 25) intron (NM_152788, intron 12 of 25) -227063 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 5755 chr11 83156853 83156923 + 0 NA promoter-TSS (NM_001346415) promoter-TSS (NM_001346415) -207 NM_001346415 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 14741 chr19 51394342 51394501 + 0 NA Intergenic CpG -3847 NM_001193623 147646 Hs.148344 NM_001193623 ENSG00000262874 C19orf84 - chromosome 19 open reading frame 84 protein-coding 19783 chr3 102123894 102123998 + 0 NA Intergenic L1MA9|LINE|L1 -39759 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 31085 chrX 134915183 134915333 + 0 NA promoter-TSS (NM_001306188) promoter-TSS (NM_001306188) 86 NM_019556 56180 Hs.590789 NM_019556 ENSG00000101928 MOSPD1 DJ473B4 motile sperm domain containing 1 protein-coding 19455 chr3 47164085 47164194 + 0 NA promoter-TSS (NM_014159) promoter-TSS (NM_014159) -162 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2 protein-coding 13309 chr18 22844351 22844450 + 0 NA Intergenic Intergenic -57563 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 17173 chr2 223837481 223837614 + 0 NA promoter-TSS (NM_001039569) promoter-TSS (NM_001039569) 55 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 sigma 3 subunit protein-coding 1481 chr1 109548502 109548688 + 0 NA promoter-TSS (NM_006496) promoter-TSS (NM_006496) 31 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 25802 chr7 20307193 20307297 + 0 NA intron (NR_110117, intron 4 of 4) intron (NR_110117, intron 4 of 4) 10537 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 30614 chrX 38801289 38801393 + 0 NA promoter-TSS (NM_001098790) promoter-TSS (NM_001098790) -91 NM_021242 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 2927 chr1 230426421 230426501 + 0 NA promoter-TSS (NM_001258311) promoter-TSS (NM_001258311) -533 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 9666 chr14 100072868 100072972 + 0 NA intron (NM_016337, intron 1 of 13) MIR3|SINE|MIR 7506 NM_016337 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 19844 chr3 109685495 109685599 + 0 NA Intergenic LTR25|LTR|ERV1 82719 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 6535 chr12 6852430 6852542 + 0 NA promoter-TSS (NM_001331019) promoter-TSS (NM_001331019) 359 NM_003481 8078 Hs.631661 NM_003481 ENSG00000111667 USP5 ISOT ubiquitin specific peptidase 5 protein-coding 11276 chr16 46621398 46621502 + 0 NA promoter-TSS (NM_001324318) promoter-TSS (NM_001324318) -48 NM_001324319 79801 Hs.123253 NM_024745 ENSG00000171241 SHCBP1 PAL SHC binding and spindle associated 1 protein-coding 11180 chr16 28491966 28492126 + 0 NA promoter-TSS (NM_001286109) promoter-TSS (NM_001286109) 36 NM_001286110 1201 Hs.534667 NM_000086 ENSG00000188603 CLN3 BTN1|BTS|JNCL CLN3, battenin protein-coding 4564 chr10 124791821 124791997 + 0 NA promoter-TSS (NM_001304467) promoter-TSS (NM_001304467) 32 NM_001304467 399818 Hs.720819 NM_212554 ENSG00000203791 METTL10 C10orf138 methyltransferase like 10 protein-coding 9796 chr15 28915233 28915337 + 0 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -6352 NM_005503 321 Hs.618112 NM_005503 ENSG00000034053 APBA2 D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L amyloid beta precursor protein binding family A member 2 protein-coding 19666 chr3 72661203 72661307 + 0 NA Intergenic Intergenic 2994 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 517 chr1 31155480 31155628 + 0 NA Intergenic CpG 84333 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C Sodium/potassium transporting ATPase interacting 1 protein-coding 17396 chr2 241102339 241102460 + 0 NA promoter-TSS (NR_028049) promoter-TSS (NR_028049) -67 NR_138464 130916 Hs.159556 NM_182501 ENSG00000122085 MTERF4 MTERFD2 mitochondrial transcription termination factor 4 protein-coding 5887 chr11 94768163 94768294 + 0 NA promoter-TSS (NM_130847) promoter-TSS (NM_130847) -114 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 17832 chr20 31157468 31157538 + 0 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -100161 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 19423 chr3 43690789 43690940 + 0 NA promoter-TSS (NM_016006) promoter-TSS (NM_016006) -19 NM_016006 51099 Hs.19385 NM_016006 ENSG00000011198 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 23073 chr5 116947984 116948088 + 0 NA Intergenic Intergenic -185827 NR_104678 102467223 Hs.570916 NR_104678 LOC102467223 - uncharacterized LOC102467223 ncRNA 1363 chr1 95731083 95731196 + 0 NA Intergenic Intergenic 221023 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LOC100996635 - uncharacterized LOC100996635 ncRNA 3051 chr1 238088995 238089130 + 0 NA Intergenic LTR51|LTR|ERV1 -198140 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 1109 chr1 70221318 70221444 + 0 NA intron (NM_001190987, intron 1 of 12) intron (NM_001190987, intron 1 of 12) 15699 NM_001190987 9295 Hs.479693 NM_004768 ENSG00000116754 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine and arginine rich splicing factor 11 protein-coding 16030 chr2 101252599 101252703 + 0 NA promoter-TSS (NM_017546) promoter-TSS (NM_017546) -232 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 6787 chr12 27593341 27593445 + 0 NA intron (NM_001198915, intron 2 of 26) intron (NM_001198915, intron 2 of 26) 69281 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 2067 chr1 171314047 171314161 + 0 NA promoter-TSS (NM_002022) promoter-TSS (NM_002022) -79 NM_002022 2329 Hs.386502 NM_002022 ENSG00000076258 FMO4 FMO2 flavin containing monooxygenase 4 protein-coding 8929 chr14 44317005 44317109 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 190239 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 23233 chr5 134004883 134005012 + 0 NA promoter-TSS (NR_036625) promoter-TSS (NR_036625) 19 NR_036624 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 18744 chr22 28172938 28173066 + 0 NA intron (NM_001145418, intron 5 of 22) MIRc|SINE|MIR -252390 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 30355 chr9 136363281 136363414 + 0 NA TTS (NM_052813) TTS (NM_052813) 464 NR_073565 728489 Hs.528581 NM_001080849 ENSG00000213221 DNLZ C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2 DNL-type zinc finger protein-coding 25368 chr6 154112307 154112411 + 0 NA intron (NR_104348, intron 4 of 4) LTR40b|LTR|ERVL 22597 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 19485 chr3 49007236 49007373 + 0 NA promoter-TSS (NM_001320547) promoter-TSS (NM_001320547) 242 NM_018031 11180 Hs.654815 NM_018031 ENSG00000178252 WDR6 - WD repeat domain 6 protein-coding 2154 chr1 180522183 180522309 + 0 NA Intergenic Intergenic -19359 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 27446 chr8 17805966 17806104 + 0 NA Intergenic Intergenic -5118 NM_001001924 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 4171 chr10 97687182 97687286 + 0 NA promoter-TSS (NM_021732) promoter-TSS (NM_021732) 24 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 6023 chr11 108008809 108008937 + 0 NA 5' UTR (NM_003478, exon 1 of 19) 5' UTR (NM_003478, exon 1 of 19) 191 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 VACM-1|VACM1 cullin 5 protein-coding 742 chr1 42846502 42846588 + 0 NA promoter-TSS (NM_001242739) promoter-TSS (NM_001242739) -28 NM_001242739 51058 Hs.20879 NM_015911 ENSG00000164011 ZNF691 Zfp691 zinc finger protein 691 protein-coding 12879 chr17 66637645 66637742 + 0 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -149379 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 14814 chr19 55407736 55407863 + 0 NA 5' UTR (NM_014501, exon 1 of 4) 5' UTR (NM_014501, exon 1 of 4) 158 NM_014501 27338 Hs.396393 NM_014501 ENSG00000108106 UBE2S E2-EPF|E2EPF|EPF5 ubiquitin conjugating enzyme E2 S protein-coding 21318 chr4 42642309 42642413 + 0 NA intron (NM_006095, intron 1 of 36) MamRTE1|LINE|RTE-BovB 14744 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 16979 chr2 206765228 206765332 + 0 NA promoter-TSS (NM_001136193) promoter-TSS (NM_001136193) -108 NM_001136194 22868 Hs.5930 NM_014929 ENSG00000118246 FASTKD2 KIAA0971 FAST kinase domains 2 protein-coding 12238 chr17 27293930 27294125 + 0 NA promoter-TSS (NR_039748) promoter-TSS (NR_039748) -31 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 7712 chr12 117687139 117687178 + 0 NA intron (NM_173598, intron 4 of 19) MIRc|SINE|MIR 281065 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 16840 chr2 191171795 191171899 + 0 NA Intergenic Intergenic -20251 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 23255 chr5 134637237 134637421 + 0 NA Intergenic Intergenic -4486 NM_016103 51128 Hs.432984 NM_016103 ENSG00000152700 SAR1B ANDD|CMRD|GTBPB|SARA2 secretion associated Ras related GTPase 1B protein-coding 58 chr1 3619084 3619188 + 0 NA Intergenic Intergenic -5856 NM_182752 127262 Hs.20529 NM_182752 ENSG00000158109 TPRG1L FAM79A|h-mover|mover tumor protein p63 regulated 1 like protein-coding 28439 chr8 112673722 112673795 + 0 NA intron (NM_198123, intron 16 of 70) intron (NM_198123, intron 16 of 70) 30265 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 24483 chr6 37056649 37056790 + 0 NA Intergenic Intergenic 51072 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 20126 chr3 129310305 129310409 + 0 NA Intergenic MLT2F|LTR|ERVL -5914 NR_026991 339942 Hs.450096 NM_001025468 H1FX-AS1 C3orf47 H1FX antisense RNA 1 ncRNA 18088 chr20 45362990 45363159 + 0 NA promoter-TSS (NM_033542) promoter-TSS (NM_033542) -26 NM_033542 90196 Hs.655055 NM_033542 ENSG00000204070 SYS1 C20orf169|dJ453C12.4|dJ453C12.4.1 SYS1, golgi trafficking protein protein-coding 4086 chr10 93335158 93335284 + 0 NA intron (NM_133337, intron 40 of 52) L2c|LINE|L2 147096 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 12777 chr17 58517853 58517957 + 0 NA promoter-TSS (NM_004687) promoter-TSS (NM_004687) -15 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 6028 chr11 108341106 108341241 + 0 NA intron (NM_000051, intron 56 of 62) L2a|LINE|L2 118341 NM_000051 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 15526 chr2 48531424 48531569 + 0 NA intron (NM_001198595, intron 2 of 4) intron (NM_001198595, intron 2 of 4) 1327 NM_006873 11037 Hs.44385 NM_006873 ENSG00000243244 STON1 SALF|SBLF|STN1|STNB1 stonin 1 protein-coding 22995 chr5 108748838 108748991 + 0 NA promoter-TSS (NM_001308028) promoter-TSS (NM_001308028) -13 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 12488 chr17 41579703 41579775 + 0 NA Intergenic Intergenic 7156 NM_000526 3861 Hs.654380 NM_000526 ENSG00000186847 KRT14 CK14|EBS3|EBS4|K14|NFJ keratin 14 protein-coding 11625 chr16 74606608 74606743 + 0 NA non-coding (NR_027265, exon 1 of 21) non-coding (NR_027265, exon 1 of 21) 469 NM_012201 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 23480 chr5 149134668 149134670 + 0 NA Intergenic Intergenic -6778 NM_001301015 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 19249 chr3 23042485 23042529 + 0 NA Intergenic Intergenic 160071 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 18163 chr20 49700745 49700849 + 0 NA intron (NM_004776, intron 1 of 8) MER44B|DNA|TcMar-Tigger 13087 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 8646 chr13 113363591 113363722 + 0 NA intron (NM_001286732, intron 2 of 6) CpG 492 NM_024719 79774 Hs.745043 NM_024719 ENSG00000139835 GRTP1 TBC1D6 growth hormone regulated TBC protein 1 protein-coding 15829 chr2 74458240 74458371 + 0 NA promoter-TSS (NM_012477) promoter-TSS (NM_012477) -95 NM_012477 23559 Hs.516114 NM_012477 ENSG00000239779 WBP1 WBP-1 WW domain binding protein 1 protein-coding 16349 chr2 133818295 133818399 + 0 NA Intergenic Intergenic -249887 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 4671 chr11 728011 728115 + 0 NA TTS (NM_022772) TTS (NM_022772) -19369 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 14037 chr19 8444782 8444942 + 0 NA promoter-TSS (NM_001297418) promoter-TSS (NM_001297418) 34 NM_001297418 4670 Hs.465808 NM_005968 ENSG00000099783 HNRNPM CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M heterogeneous nuclear ribonucleoprotein M protein-coding 22172 chr5 5126559 5126663 + 0 NA Intergenic LTR53|LTR|ERVL 13443 NR_109915 101929176 Hs.208717 NR_109915 CTD-2297D10.2 - uncharacterized LOC101929176 ncRNA 6527 chr12 6689582 6689688 + 0 NA promoter-TSS (NM_133476) promoter-TSS (NM_133476) -63 NM_001039920 171017 Hs.103315 NM_133476 ENSG00000126746 ZNF384 CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 zinc finger protein 384 protein-coding 20047 chr3 123807947 123808091 + 0 NA intron (NM_053026, intron 3 of 32) intron (NM_053026, intron 3 of 32) 76283 NM_053026 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 29583 chr9 94213596 94213750 + 0 NA Intergenic Intergenic -9107 NR_046163 158257 Hs.652626 NR_046163 ENSG00000230262 MIRLET7DHG - MIRLET7D host gene ncRNA 24200 chr6 24775238 24775399 + 0 NA promoter-TSS (NM_001251991) promoter-TSS (NM_001251991) -95 NM_001251991 51053 Hs.234896 NM_015895 ENSG00000112312 GMNN Gem|MGORS6 geminin, DNA replication inhibitor protein-coding 16894 chr2 199851177 199851281 + 0 NA promoter-TSS (NR_034096) promoter-TSS (NR_034096) -56 NR_034096 348751 Hs.734578 NR_034096 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like ncRNA 17354 chr2 237692158 237692199 + 0 NA promoter-TSS (NM_001137552) promoter-TSS (NM_001137552) 14 NM_001137553 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 13405 chr18 32018571 32018648 + 0 NA 5' UTR (NM_017831, exon 1 of 6) 5' UTR (NM_017831, exon 1 of 6) 127 NM_017831 54941 Hs.633703 NM_017831 ENSG00000101695 RNF125 TNORS|TRAC-1|TRAC1 ring finger protein 125 protein-coding 4018 chr10 86346007 86346111 + 0 NA intron (NM_017551, intron 2 of 15) L2c|LINE|L2 20434 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 19656 chr3 71069891 71070045 + 0 NA intron (NM_032682, intron 7 of 20) intron (NM_032682, intron 7 of 20) -5045 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 16316 chr2 130342791 130342929 + 0 NA promoter-TSS (NM_001321118) promoter-TSS (NM_001321118) -179 NR_104471 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 24373 chr6 31718466 31718591 + 0 NA TTS (NM_025261) TTS (NM_025261) 3172 NM_021246 58530 Hs.591792 NM_021246 ENSG00000244355 LY6G6D C6orf23|G6D|LY6-D|MEGT1|NG25 lymphocyte antigen 6 complex, locus G6D protein-coding 9760 chr14 105602897 105602957 + 0 NA Intergenic (CCAGC)n|Simple_repeat|Simple_repeat -18189 NR_107038 102465871 NR_107038 ENSG00000274172 MIR8071-1 hsa-mir-8071-1 microRNA 8071-1 ncRNA 16595 chr2 165009013 165009162 + 0 NA Intergenic Intergenic -53562 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 27106 chr7 139916590 139916694 + 0 NA intron (NM_030984, intron 4 of 11) intron (NM_030984, intron 4 of 11) 87489 NM_001061 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 5598 chr11 69685962 69686115 + 0 NA Intergenic CpG -10641 NM_153451 220064 Hs.667996 NM_153451 ENSG00000149716 ORAOV1 TAOS1 oral cancer overexpressed 1 protein-coding 22870 chr5 90983256 90983360 + 0 NA intron (NM_032119, intron 84 of 89) intron (NM_032119, intron 84 of 89) 331094 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 4912 chr11 15970138 15970207 + 0 NA promoter-TSS (NR_106721) promoter-TSS (NR_106721) -551 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 285 chr1 19643244 19643348 + 0 NA promoter-TSS (NM_001278164) promoter-TSS (NM_001278164) 67 NM_001278164 4681 Hs.654502 NM_005380 ENSG00000158747 NBL1 D1S1733E|DAN|DAND1|NB|NO3 neuroblastoma 1, DAN family BMP antagonist protein-coding 2441 chr1 203751254 203751399 + 0 NA Intergenic Intergenic -13830 NM_017773 54900 Hs.272794 NM_017773 ENSG00000122188 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 5171 chr11 36214627 36214731 + 0 NA intron (NM_001304264, intron 4 of 5) MIRb|SINE|MIR 74770 NM_001101653 29099 Hs.279836 NM_014186 ENSG00000110442 COMMD9 HSPC166 COMM domain containing 9 protein-coding 9470 chr14 81303337 81303441 + 0 NA intron (NM_001256430, intron 5 of 7) intron (NM_001256430, intron 5 of 7) -82158 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 28076 chr8 80084347 80084473 + 0 NA intron (NM_005079, intron 1 of 5) intron (NM_005079, intron 1 of 5) -3579 NM_001287140 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 7665 chr12 112014215 112014319 + 0 NA intron (NM_001034025, intron 1 of 1) MER1B|DNA|hAT-Charlie 919 NM_006817 10961 Hs.75841 NM_006817 ENSG00000089248 ERP29 C12orf8|ERp28|ERp31|HEL-S-107|PDI-DB|PDIA9 endoplasmic reticulum protein 29 protein-coding 2414 chr1 202589353 202589485 + 0 NA TTS (NM_002481) TTS (NM_002481) 49305 NM_001197131 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 18310 chr20 57351148 57351252 + 0 NA promoter-TSS (NM_001015885) promoter-TSS (NM_001015885) 111 NM_003610 8480 Hs.371698 NM_003610 ENSG00000101146 RAE1 MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1 ribonucleic acid export 1 protein-coding 19695 chr3 87206329 87206433 + 0 NA Intergenic L2c|LINE|L2 19896 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 2285 chr1 194055283 194055387 + 0 NA Intergenic L1MB7|LINE|L1 750590 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 2194 chr1 182643790 182643970 + 0 NA 3' UTR (NM_033345, exon 6 of 6) 3' UTR (NM_033345, exon 6 of 6) 28740 NR_036490 284648 Hs.253475 NR_036490 ENSG00000261504 LINC01686 - long intergenic non-protein coding RNA 1686 ncRNA 4423 chr10 116767407 116767511 + 0 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) -24885 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 25869 chr7 24053079 24053129 + 0 NA Intergenic Intergenic -231084 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 21354 chr4 49635488 49635638 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 648921 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 6425 chr12 389578 389621 + 0 NA promoter-TSS (NM_001042603) promoter-TSS (NM_001042603) -144 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 1135 chr1 76154254 76154358 + 0 NA intron (NM_152996, intron 1 of 4) intron (NM_152996, intron 1 of 4) 79602 NM_001160011 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 31049 chrX 129905963 129906114 + 0 NA promoter-TSS (NM_001166221) promoter-TSS (NM_001166221) -83 NM_001166221 10813 Hs.458598 NM_006649 ENSG00000156697 UTP14A NYCO16|SDCCAG16|dJ537K23.3 UTP14A small subunit processome component protein-coding 14143 chr19 12681348 12681452 + 0 NA promoter-TSS (NM_001206974) promoter-TSS (NM_001206974) -189 NM_001206974 1725 Hs.79064 NM_001930 ENSG00000095059 DHPS DHS|DS|MIG13 deoxyhypusine synthase protein-coding 4198 chr10 99685665 99685763 + 0 NA intron (NM_020354, intron 5 of 12) intron (NM_020354, intron 5 of 12) 26208 NM_020354 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 96 chr1 6785268 6785422 + 0 NA promoter-TSS (NM_001195563) promoter-TSS (NM_001195563) 21 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 31064 chrX 132004878 132004982 + 0 NA Intergenic Intergenic -18287 NM_001042453 51765 Hs.444247 NM_016542 ENSG00000134602 STK26 MASK|MST4 serine/threonine kinase 26 protein-coding 29540 chr9 92098056 92098200 + 0 NA intron (NM_001281303, intron 3 of 14) HERV-Fc1_LTR3|LTR|ERV1 17346 NM_178324 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 6726 chr12 22101984 22102088 + 0 NA Intergenic L1PREC2|LINE|L1 55862 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 17996 chr20 39016259 39016363 + 0 NA intron (NM_001190809, intron 13 of 20) MSTA1|LTR|ERVL-MaLR 53973 NM_021931 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 30545 chrX 20141856 20142052 + 0 NA promoter-TSS (NM_001412) promoter-TSS (NM_001412) -106 NM_001412 1964 Hs.522590 NM_001412 ENSG00000173674 EIF1AX EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C eukaryotic translation initiation factor 1A, X-linked protein-coding 24096 chr6 15323301 15323405 + 0 NA intron (NM_001267040, intron 1 of 17) intron (NM_001267040, intron 1 of 17) 74498 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 22915 chr5 95961978 95962073 + 0 NA promoter-TSS (NM_012081) promoter-TSS (NM_012081) 24 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 9908 chr15 39581006 39581059 + 0 NA promoter-TSS (NM_003246) promoter-TSS (NM_003246) -47 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 24507 chr6 38639870 38639959 + 0 NA 5' UTR (NM_052893, exon 1 of 12) 5' UTR (NM_052893, exon 1 of 12) 234 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 14576 chr19 45717422 45717528 + 0 NA intron (NM_001329633, intron 1 of 1) intron (NM_001329633, intron 1 of 1) -2197 NM_001329632 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 29298 chr9 77064028 77064098 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 44408 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 12893 chr17 68020044 68020203 + 0 NA Intergenic CpG -15479 NM_002266 3838 Hs.594238 NM_002266 ENSG00000182481 KPNA2 IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha karyopherin subunit alpha 2 protein-coding 27054 chr7 134779420 134779593 + 0 NA promoter-TSS (NM_004342) promoter-TSS (NM_004342) 93 NM_033157 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 17402 chr2 241355387 241355530 + 0 NA promoter-TSS (NM_001282983) promoter-TSS (NM_001282983) -791 NM_001282983 9855 Hs.726316 NM_014808 ENSG00000006607 FARP2 FIR|FRG|PLEKHC3 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding 15415 chr2 41840868 41840972 + 0 NA Intergenic CpG -36635 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 24539 chr6 41779993 41780114 + 0 NA promoter-TSS (NM_006653) promoter-TSS (NM_006653) -148 NM_006653 10817 Hs.194208 NM_006653 ENSG00000137218 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 1396 chr1 99659824 99659964 + 0 NA intron (NM_017734, intron 1 of 7) intron (NM_017734, intron 1 of 7) 14019 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 1760 chr1 153515985 153516098 + 0 NA Intergenic Intergenic 20200 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 12839 chr17 63842834 63842874 + 0 NA promoter-TSS (NM_001330439) promoter-TSS (NM_001330439) 137 NM_001098426 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 391 chr1 25338402 25338505 + 0 NA promoter-TSS (NM_001321772) promoter-TSS (NM_001321772) 155 NM_014313 23585 Hs.705699 NM_014313 ENSG00000183726 TMEM50A IFNRC|SMP1 transmembrane protein 50A protein-coding 11336 chr16 51431653 51431757 + 0 NA Intergenic Intergenic -280433 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 8796 chr14 31420536 31420679 + 0 NA promoter-TSS (NM_015473) promoter-TSS (NM_015473) -25 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 13445 chr18 36129769 36129907 + 0 NA promoter-TSS (NM_012319) promoter-TSS (NM_012319) -36 NR_136898 55250 Hs.8739 NM_018255 ENSG00000134759 ELP2 SHINC-2|STATIP1|StIP elongator acetyltransferase complex subunit 2 protein-coding 27246 chr7 152463829 152463888 + 0 NA promoter-TSS (NR_027387) promoter-TSS (NR_027387) -266 NR_027387 100128822 Hs.647112 NR_027387 ENSG00000261455 LINC01003 - long intergenic non-protein coding RNA 1003 ncRNA 2676 chr1 214603075 214603240 + 0 NA promoter-TSS (NM_016343) promoter-TSS (NM_016343) -32 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 8455 chr13 95535380 95535459 + 0 NA intron (NM_182848, intron 1 of 4) L2c|LINE|L2 -1509 NR_046533 100874194 Hs.569229 NR_046533 ENSG00000223392 CLDN10-AS1 - CLDN10 antisense RNA 1 ncRNA 5596 chr11 69639030 69639163 + 0 NA Intergenic CpG -2009 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 16666 chr2 172693168 172693351 + 0 NA Intergenic Intergenic -42538 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 8581 chr13 108919531 108919647 + 0 NA intron (NM_001198950, intron 16 of 34) intron (NM_001198950, intron 16 of 34) 247714 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 14557 chr19 45448995 45449099 + 0 NA Intergenic Intergenic 12393 NR_106736 102464836 NR_106736 ENSG00000275726 MIR6088 hsa-mir-6088 microRNA 6088 ncRNA 30625 chrX 40580726 40580911 + 0 NA promoter-TSS (NM_005765) promoter-TSS (NM_005765) -146 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 13143 chr17 81860756 81860783 + 0 NA promoter-TSS (NM_000918) promoter-TSS (NM_000918) -101 NM_000918 5034 Hs.464336 NM_000918 ENSG00000185624 P4HB CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB prolyl 4-hydroxylase subunit beta protein-coding 17286 chr2 232593250 232593277 + 0 NA Intergenic Intergenic -12794 NM_001243252 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 8090 chr13 33285767 33285947 + 0 NA promoter-TSS (NM_178006) promoter-TSS (NM_178006) -93 NM_178006 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 10495 chr15 77959486 77959600 + 0 NA Intergenic Intergenic -32697 NR_027024 645752 Hs.546408 NR_027024 LOC645752 - golgin A6 family member A pseudogene pseudo 25771 chr7 18019657 18019761 + 0 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 8154 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1-like 1 protein-coding 29339 chr9 79382580 79382684 + 0 NA Intergenic Intergenic -189141 NM_001282749 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 8273 chr13 50081940 50082109 + 0 NA promoter-TSS (NR_109973) promoter-TSS (NR_109973) -145 NR_109973 10301 Hs.591229 NM_005887 ENSG00000176124 DLEU1 BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 deleted in lymphocytic leukemia 1 ncRNA 4102 chr10 94362927 94363064 + 0 NA promoter-TSS (NM_022451) promoter-TSS (NM_022451) -19 NM_022451 64318 Hs.74899 NM_022451 ENSG00000173145 NOC3L AD24|C10orf117|FAD24 NOC3 like DNA replication regulator protein-coding 11254 chr16 30997274 30997378 + 0 NA intron (NM_052874, intron 5 of 9) CpG 12128 NM_001142778 80270 Hs.460618 NM_025193 ENSG00000099377 HSD3B7 CBAS1|PFIC4|SDR11E3 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding 24243 chr6 26568720 26568873 + 0 NA promoter-TSS (NR_134611) promoter-TSS (NR_134611) -528 NR_134611 105374988 Hs.551772 NR_134611 LOC105374988 - uncharacterized LOC105374988 ncRNA 31077 chrX 133544254 133544399 + 0 NA intron (NM_001164618, intron 7 of 7) intron (NM_001164618, intron 7 of 7) -129149 NM_001448 2239 Hs.58367 NM_001448 ENSG00000076716 GPC4 K-glypican glypican 4 protein-coding 30851 chrX 78307779 78307883 + 0 NA intron (NM_006639, intron 1 of 2) intron (NM_006639, intron 1 of 2) 19860 NM_006639 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 8264 chr13 49587398 49587502 + 0 NA Intergenic Intergenic -1867 NM_018191 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 12904 chr17 68759514 68759618 + 0 NA Intergenic Intergenic 131412 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 27361 chr8 9002780 9002884 + 0 NA promoter-TSS (NM_153332) promoter-TSS (NM_153332) 28 NM_153332 90459 Hs.20000 NM_153332 ENSG00000104626 ERI1 3'HEXO|HEXO|THEX1 exoribonuclease 1 protein-coding 9312 chr14 70755130 70755275 + 0 NA intron (NM_033141, intron 3 of 12) L2b|LINE|L2 28250 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 1688 chr1 150604820 150604963 + 0 NA Intergenic Intergenic 24242 NM_207045 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding 3311 chr10 13984742 13984747 + 0 NA intron (NM_018027, intron 2 of 24) L1MB2|LINE|L1 -12375 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 7481 chr12 97596124 97596152 + 0 NA Intergenic Intergenic 32326 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 13673 chr18 60358690 60358794 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 14026 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R - melanocortin 4 receptor protein-coding 23169 chr5 128546793 128546870 + 0 NA Intergenic MER41B|LTR|ERV1 -8789 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 21545 chr4 86586283 86586387 + 0 NA Intergenic Intergenic -7980 NM_006264 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase, non-receptor type 13 protein-coding 1458 chr1 108830612 108830716 + 0 NA intron (NR_049760, intron 8 of 13) intron (NR_049760, intron 8 of 13) 26440 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 14918 chr2 2613459 2613630 + 0 NA Intergenic Intergenic -282231 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 23881 chr6 2476495 2476644 + 0 NA Intergenic Intergenic 158034 NR_131168 154386 Hs.680574 NM_152554 ENSG00000164385 LINC01600 C6orf195|bA145H9.2 long intergenic non-protein coding RNA 1600 ncRNA 23696 chr5 170173379 170173483 + 0 NA Intergenic Intergenic 25710 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 18815 chr22 32050766 32050918 + 0 NA intron (NM_000343, intron 2 of 14) intron (NM_000343, intron 2 of 14) 7810 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 25297 chr6 148193140 148193292 + 0 NA Intergenic Intergenic -79060 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 24360 chr6 31463031 31463185 + 0 NA promoter-TSS (NR_040662) promoter-TSS (NR_040662) -72 NR_040662 10866 Hs.691948 NR_040662 ENSG00000206337 HCP5 6S2650E|D6S2650E|P5-1 HLA complex P5 (non-protein coding) ncRNA 7953 chr13 21477206 21477310 + 0 NA Intergenic LTR50|LTR|ERVL -17888 NM_001330059 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20 zinc finger DHHC-type containing 20 protein-coding 26169 chr7 44490565 44490701 + 0 NA 5' UTR (NM_015332, exon 1 of 6) 5' UTR (NM_015332, exon 1 of 6) 153 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 19603 chr3 58560849 58560953 + 0 NA Intergenic Intergenic 16863 NM_001076778 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 1336 chr1 94325845 94325949 + 0 NA Intergenic Intergenic -78137 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 7278 chr12 75863173 75863224 + 0 NA Intergenic LTR90A|LTR|LTR 168578 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 30052 chr9 122093289 122093421 + 0 NA exon (NM_001139442, exon 1 of 9) exon (NM_001139442, exon 1 of 9) 251 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 17315 chr2 234881786 234881890 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -70146 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 27692 chr8 37899421 37899536 + 0 NA promoter-TSS (NM_025151) promoter-TSS (NM_025151) 19 NM_025151 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 29656 chr9 97983144 97983248 + 0 NA promoter-TSS (NM_006401) promoter-TSS (NM_006401) -11 NM_006401 10541 Hs.730654 NM_006401 ENSG00000136938 ANP32B APRIL|PHAPI2|SSP29 acidic nuclear phosphoprotein 32 family member B protein-coding 29734 chr9 104991783 104991887 + 0 NA Intergenic Intergenic -63589 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 8328 chr13 66657237 66657399 + 0 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -167851 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 26324 chr7 56064206 56064304 + 0 NA promoter-TSS (NM_001130069) promoter-TSS (NM_001130069) 31 NM_001042469 25870 Hs.279696 NM_015411 ENSG00000129103 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 3036 chr1 236980689 236980793 + 0 NA Intergenic L2a|LINE|L2 23677 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H-like 1 protein-coding 14962 chr2 9234920 9235070 + 0 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 28230 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 20934 chr3 190120850 190121003 + 0 NA promoter-TSS (NR_126419) promoter-TSS (NR_126419) -38 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 4137 chr10 96271510 96271614 + 0 NA promoter-TSS (NM_001258441) promoter-TSS (NM_001258441) 14 NM_001114094 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B-cell linker protein-coding 28171 chr8 89984113 89984261 + 0 NA intron (NM_001024688, intron 1 of 16) CpG 484 NM_002485 4683 Hs.492208 NM_002485 ENSG00000104320 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 6140 chr11 117316238 117316391 + 0 NA promoter-TSS (NM_138972) promoter-TSS (NM_138972) -58 NM_138971 23621 Hs.504003 NM_012104 ENSG00000186318 BACE1 ASP2|BACE|HSPC104 beta-secretase 1 protein-coding 7405 chr12 90091382 90091515 + 0 NA Intergenic Intergenic 143755 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LOC105369891 - uncharacterized LOC105369891 ncRNA 26586 chr7 92179054 92179158 + 0 NA non-coding (NR_122109, exon 5 of 5) non-coding (NR_122109, exon 5 of 5) -13830 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 20511 chr3 158110056 158110186 + 0 NA promoter-TSS (NM_001271834) promoter-TSS (NM_001271834) 69 NM_016625 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 4806 chr11 10050682 10050786 + 0 NA intron (NM_030962, intron 2 of 39) MER44D|DNA|TcMar-Tigger 211592 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 3413 chr10 22816445 22816517 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -101907 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 8325 chr13 64689366 64689470 + 0 NA Intergenic LTR40a|LTR|ERVL -845293 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 22927 chr5 96702603 96702743 + 0 NA promoter-TSS (NM_001042443) promoter-TSS (NM_001042443) 13 NM_001042444 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 18066 chr20 44475791 44475895 + 0 NA promoter-TSS (NM_001039199) promoter-TSS (NM_001039199) -43 NM_001261839 79183 Hs.283869 NM_024331 ENSG00000124120 TTPAL C20orf121 alpha tocopherol transfer protein like protein-coding 16843 chr2 191246111 191246215 + 0 NA intron (NM_001130158, intron 1 of 30) CpG 887 NM_001161819 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 9990 chr15 43330519 43330672 + 0 NA promoter-TSS (NM_014793) promoter-TSS (NM_014793) 27 NM_014793 9836 Hs.200596 NM_014793 ENSG00000168806 LCMT2 PPM2|TYW4 leucine carboxyl methyltransferase 2 protein-coding 25199 chr6 136822492 136822596 + 0 NA promoter-TSS (NM_000288) promoter-TSS (NM_000288) -20 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 1580 chr1 116693987 116694091 + 0 NA promoter-TSS (NM_001013643) promoter-TSS (NM_001013643) -73 NM_001013643 388667 Hs.127851 NM_001013643 C1orf137 - chromosome 1 open reading frame 137 protein-coding 21194 chr4 14856570 14856643 + 0 NA intron (NR_126435, intron 2 of 6) intron (NR_126435, intron 2 of 6) 31563 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 3274 chr10 9825530 9825667 + 0 NA Intergenic MER61E|LTR|ERV1 -233124 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LOC101928298 - uncharacterized LOC101928298 ncRNA 10341 chr15 67941746 67941850 + 0 NA Intergenic Intergenic -101753 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 2146 chr1 179883877 179883981 + 0 NA intron (NM_001267578, intron 1 of 9) intron (NM_001267578, intron 1 of 9) 1887 NM_001267578 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 26192 chr7 45920987 45921061 + 0 NA exon (NM_000598, exon 1 of 5) exon (NM_000598, exon 1 of 5) 248 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 11087 chr16 19432541 19432617 + 0 NA intron (NM_001105249, intron 2 of 20) intron (NM_001105249, intron 2 of 20) 14883 NM_001261841 79838 Hs.115838 NM_024780 ENSG00000103534 TMC5 - transmembrane channel like 5 protein-coding 11320 chr16 49857176 49857280 + 0 NA intron (NM_001271620, intron 1 of 7) CpG 691 NM_001271620 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 14530 chr19 44770657 44770684 + 0 NA Intergenic Intergenic -7199 NM_001130852 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 5742 chr11 82747542 82747682 + 0 NA Intergenic AluSz|SINE|Alu -13748 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 23323 chr5 139482283 139482387 + 0 NA promoter-TSS (NM_001301738) promoter-TSS (NM_001301738) -33 NM_001301738 340061 Hs.379754 NM_198282 ENSG00000184584 TMEM173 ERIS|MITA|MPYS|NET23|SAVI|STING|hMITA|hSTING transmembrane protein 173 protein-coding 21001 chr3 193828552 193828656 + 0 NA Intergenic MIRc|SINE|MIR 165634 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 3802 chr10 68094042 68094226 + 0 NA Intergenic MER41B|LTR|ERV1 -11983 NM_001256267 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|RCM4 myopalladin protein-coding 5113 chr11 33257848 33257896 + 0 NA promoter-TSS (NM_001278162) promoter-TSS (NM_001278162) -459 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 24894 chr6 87590037 87590106 + 0 NA promoter-TSS (NM_181837) promoter-TSS (NM_181837) 4 NM_012381 23595 Hs.410228 NM_012381 ENSG00000135336 ORC3 LAT|LATHEO|ORC3L origin recognition complex subunit 3 protein-coding 21971 chr4 164142195 164142299 + 0 NA intron (NM_001166373, intron 1 of 7) L1PA3|LINE|L1 55464 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 21835 chr4 140154188 140154292 + 0 NA promoter-TSS (NM_018717) promoter-TSS (NM_018717) -161 NM_018717 55534 Hs.586165 NM_018717 ENSG00000196782 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind like transcriptional coactivator 3 protein-coding 23072 chr5 116574809 116574913 + 0 NA promoter-TSS (NM_001300780) promoter-TSS (NM_001300780) 65 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 3004 chr1 235060855 235060895 + 0 NA Intergenic Intergenic 8943 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 30288 chr9 131827278 131827382 + 0 NA Intergenic L1MB3|LINE|L1 -87386 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 3676 chr10 50622011 50622166 + 0 NA intron (NM_147156, intron 1 of 10) (TGCT)n|Simple_repeat|Simple_repeat 1889 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 7303 chr12 77848178 77848232 + 0 NA intron (NM_014903, intron 1 of 38) intron (NM_014903, intron 1 of 38) 16916 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 23593 chr5 157266053 157266157 + 0 NA promoter-TSS (NM_001037333) promoter-TSS (NM_001037333) 25 NM_001291722 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 23250 chr5 134506214 134506348 + 0 NA promoter-TSS (NR_105045) promoter-TSS (NR_105045) -271 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LINC01843 - long intergenic non-protein coding RNA 1843 ncRNA 29073 chr9 35161961 35162079 + 0 NA promoter-TSS (NM_001330653) promoter-TSS (NM_001330653) 28 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 23548 chr5 151619874 151619992 + 0 NA Intergenic Intergenic -50989 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 13345 chr18 24514634 24514738 + 0 NA Intergenic Intergenic 54057 NM_021624 59340 Hs.287388 NM_021624 ENSG00000134489 HRH4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 25775 chr7 18509113 18509247 + 0 NA promoter-TSS (NM_001204147) promoter-TSS (NM_001204147) -93 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 21980 chr4 165327434 165327588 + 0 NA promoter-TSS (NM_006745) promoter-TSS (NM_006745) -155 NM_001017369 6307 Hs.105269 NM_006745 ENSG00000052802 MSMO1 DESP4|ERG25|MCCPD|SC4MOL methylsterol monooxygenase 1 protein-coding 26134 chr7 42232378 42232482 + 0 NA intron (NM_000168, intron 1 of 14) intron (NM_000168, intron 1 of 14) 4589 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 26529 chr7 85186785 85186968 + 0 NA Intergenic CpG -64945 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 51 chr1 3320032 3320136 + 0 NA intron (NM_199454, intron 3 of 16) intron (NM_199454, intron 3 of 16) -134499 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 8505 chr13 99980651 99980656 + 0 NA Intergenic CpG -1119 NM_007129 7546 Hs.653700 NM_007129 ENSG00000043355 ZIC2 HPE5 Zic family member 2 protein-coding 28047 chr8 75314769 75314797 + 0 NA Intergenic L2a|LINE|L2 -35894 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981 cancer susceptibility candidate 9 (non-protein coding) ncRNA 25918 chr7 27096011 27096193 + 0 NA promoter-TSS (NM_005522) promoter-TSS (NM_005522) 8 NR_038366 100506311 Hs.445239 NR_038366 ENSG00000233429 HOTAIRM1 HOXA-AS1|HOXA1-AS1|NCRNA00179 HOXA transcript antisense RNA, myeloid-specific 1 ncRNA 20050 chr3 123961292 123961396 + 0 NA promoter-TSS (NM_001308317) promoter-TSS (NM_001308317) 64 NM_022757 64770 Hs.645028 NM_022757 ENSG00000175455 CCDC14 - coiled-coil domain containing 14 protein-coding 456 chr1 27490558 27490662 + 0 NA promoter-TSS (NM_001201404) promoter-TSS (NM_001201404) -423 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family member 2 protein-coding 28830 chr8 144104320 144104465 + 0 NA promoter-TSS (NM_030974) promoter-TSS (NM_030974) -10 NM_032272 84232 Hs.19673 NM_032272 ENSG00000179632 MAF1 - MAF1 homolog, negative regulator of RNA polymerase III protein-coding 22111 chr4 185396669 185396773 + 0 NA promoter-TSS (NM_181726) promoter-TSS (NM_181726) 35 NM_181726 353322 Hs.508154 NM_181726 ENSG00000186352 ANKRD37 Lrp2bp ankyrin repeat domain 37 protein-coding 22102 chr4 184968821 184968961 + 0 NA Intergenic Intergenic -30451 NR_039660 100616111 NR_039660 ENSG00000263458 MIR4455 - microRNA 4455 ncRNA 7533 chr12 101831016 101831151 + 0 NA promoter-TSS (NM_024312) promoter-TSS (NM_024312) -216 NM_024312 79158 Hs.46850 NM_024312 ENSG00000111670 GNPTAB GNPTA|ICD N-acetylglucosamine-1-phosphate transferase alpha and beta subunits protein-coding 12402 chr17 37407161 37407265 + 0 NA promoter-TSS (NM_198839).2 promoter-TSS (NM_198839).2 -12 NM_133439 6871 Hs.500066 NM_001488 ENSG00000276234 TADA2A ADA2|ADA2A|KL04P|TADA2L|hADA2 transcriptional adaptor 2A protein-coding 23735 chr5 172834238 172834342 + 0 NA promoter-TSS (NM_001031711) promoter-TSS (NM_001031711) 70 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 20510 chr3 158098173 158098305 + 0 NA exon (NM_001163678, exon 5 of 5) exon (NM_001163678, exon 5 of 5) 7924 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 7093 chr12 54423283 54423387 + 0 NA intron (NR_120488, intron 1 of 2) intron (NR_120488, intron 1 of 2) 3550 NR_120488 102724050 Hs.670941 NR_120486 ENSG00000258137 LOC102724050 - uncharacterized LOC102724050 ncRNA 10246 chr15 62739234 62739338 + 0 NA intron (NM_015059, intron 27 of 55) intron (NM_015059, intron 27 of 55) -84671 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 29907 chr9 113340257 113340404 + 0 NA promoter-TSS (NM_001006615) promoter-TSS (NM_001006615) 10 NM_145241 114987 Hs.133331 NM_145241 ENSG00000148225 WDR31 - WD repeat domain 31 protein-coding 27641 chr8 29926791 29926895 + 0 NA intron (NR_024473, intron 2 of 2) MIR3|SINE|MIR 5330 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 FAM183CP - family with sequence similarity 183 member C, pseudogene ncRNA 28368 chr8 103415142 103415258 + 0 NA non-coding (NR_102337, exon 1 of 6) non-coding (NR_102337, exon 1 of 6) 135 NR_102338 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 9122 chr14 60091899 60092020 + 0 NA promoter-TSS (NM_022495) promoter-TSS (NM_022495) 48 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex homolog 4 (Drosophila) protein-coding 27288 chr7 157490618 157490739 + 0 NA intron (NR_110157, intron 2 of 3) L1MB7|LINE|L1 24447 NR_110157 101927914 Hs.623826 NR_110157 ENSG00000234210 LOC101927914 - uncharacterized LOC101927914 ncRNA 28563 chr8 123157234 123157387 + 0 NA Intergenic Intergenic -21737 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 6702 chr12 17929175 17929279 + 0 NA Intergenic Intergenic 160966 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 366 chr1 24009574 24009678 + 0 NA Intergenic Intergenic -29163 NM_006625 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 3727 chr10 59865142 59865290 + 0 NA intron (NM_005436, intron 1 of 8) intron (NM_005436, intron 1 of 8) 41440 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 5621 chr11 72025219 72025328 + 0 NA intron (NM_001286561, intron 5 of 26) intron (NM_001286561, intron 5 of 26) 10982 NR_104178 100128494 Hs.713607 NR_104178 ENSG00000251143 LOC100128494 - uncharacterized LOC100128494 ncRNA 30168 chr9 128094447 128094602 + 0 NA intron (NM_001265614, intron 1 of 10) intron (NM_001265614, intron 1 of 10) 3060 NM_001006642 114789 Hs.5476 NM_052901 ENSG00000148339 SLC25A25 MCSC|PCSCL|SCAMC-2 solute carrier family 25 member 25 protein-coding 25249 chr6 142839003 142839107 + 0 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 106146 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 10950 chr16 4474577 4474775 + 0 NA promoter-TSS (NM_001305141) promoter-TSS (NM_001305141) -26 NM_001305141 57407 Hs.288969 NM_020677 ENSG00000153406 NMRAL1 HSCARG|SDR48A1 NmrA like redox sensor 1 protein-coding 11362 chr16 53703880 53703984 + 0 NA promoter-TSS (NM_001127897) promoter-TSS (NM_001127897) 6 NM_001328422 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 26898 chr7 118755214 118755318 + 0 NA Intergenic LTR45C|LTR|ERV1 530608 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 6196 chr11 119590725 119590783 + 0 NA Intergenic MER21C|LTR|ERVL 137971 NM_203286 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 2343 chr1 200334859 200334963 + 0 NA Intergenic L1MB5|LINE|L1 38881 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 13574 chr18 50632436 50632551 + 0 NA intron (NM_001292039, intron 1 of 4) intron (NM_001292039, intron 1 of 4) 72379 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 22109 chr4 185395993 185396056 + 0 NA promoter-TSS (NM_181726) promoter-TSS (NM_181726) -662 NM_181726 353322 Hs.508154 NM_181726 ENSG00000186352 ANKRD37 Lrp2bp ankyrin repeat domain 37 protein-coding 1754 chr1 153033043 153033181 + 0 NA TTS (NM_003125) TTS (NM_003125) 1909 NM_003125 6699 Hs.1076 NM_003125 ENSG00000169469 SPRR1B CORNIFIN|GADD33|SPR-IB|SPRR1 small proline rich protein 1B protein-coding 6770 chr12 26832209 26832231 + 0 NA intron (NM_002223, intron 1 of 56) intron (NM_002223, intron 1 of 56) 978 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 13169 chr17 82418698 82418802 + 0 NA promoter-TSS (NM_024648) promoter-TSS (NM_024648) -113 NM_175902 79701 Hs.187505 NM_024648 ENSG00000181396 OGFOD3 C17orf101 2-oxoglutarate and iron dependent oxygenase domain containing 3 protein-coding 6563 chr12 8082149 8082170 + 0 NA promoter-TSS (NR_024260) promoter-TSS (NR_024260) -52 NR_024260 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 23133 chr5 125485276 125485380 + 0 NA Intergenic Intergenic -7933 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 19371 chr3 39013983 39014105 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -37942 NR_144400 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 18489 chr21 33542818 33542964 + 0 NA promoter-TSS (NM_001291411) promoter-TSS (NM_001291411) 1 NM_001136006 2618 Hs.473648 NM_000819 ENSG00000159131 GART AIRS|GARS|GARTF|PAIS|PGFT|PRGS phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding 6160 chr11 118424887 118425015 + 0 NA Intergenic Intergenic -6136 NR_046370 100131626 Hs.721614 NR_046369 LOC100131626 - uncharacterized LOC100131626 ncRNA 25284 chr6 146357640 146357744 + 0 NA exon (NM_001278064, exon 5 of 8) exon (NM_001278064, exon 5 of 8) -186000 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 14106 chr19 11155858 11155966 + 0 NA promoter-TSS (NM_001317031) promoter-TSS (NM_001317031) -100 NM_182513 147841 Hs.381225 NM_182513 ENSG00000161888 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 24868 chr6 84466724 84466828 + 0 NA intron (NR_132100, intron 2 of 4) intron (NR_132100, intron 2 of 4) 8153 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 28909 chr9 6007727 6007732 + 0 NA promoter-TSS (NR_039811) promoter-TSS (NR_039811) -97 NR_039811 100616288 NR_039811 ENSG00000263575 MIR4665 mir-4665 microRNA 4665 ncRNA 4949 chr11 17845755 17845824 + 0 NA intron (NR_104041, intron 9 of 9) MIR3|SINE|MIR 109841 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 7422 chr12 92146129 92146134 + 0 NA promoter-TSS (NR_135036) promoter-TSS (NR_135036) 46 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 1743 chr1 152436768 152436872 + 0 NA Intergenic Intergenic -22546 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 14298 chr19 19595327 19595431 + 0 NA intron (NR_038198, intron 2 of 7) intron (NR_038198, intron 2 of 7) 23537 NM_025245 80714 Hs.466257 NM_025245 ENSG00000105717 PBX4 - PBX homeobox 4 protein-coding 6832 chr12 31728962 31729087 + 0 NA non-coding (NR_103522, exon 1 of 9) non-coding (NR_103522, exon 1 of 9) 150 NM_001278411 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 4770 chr11 7669081 7669128 + 0 NA intron (NM_001302826, intron 5 of 8) intron (NM_001302826, intron 5 of 8) 3787 NM_001302827 51700 Hs.414362 NM_016229 ENSG00000166394 CYB5R2 B5R.2 cytochrome b5 reductase 2 protein-coding 13308 chr18 22467961 22468065 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -50098 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 14946 chr2 8598428 8598532 + 0 NA Intergenic Intergenic -14688 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 4109 chr10 95247948 95248071 + 0 NA intron (NM_020992, intron 4 of 6) intron (NM_020992, intron 4 of 6) 43139 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 11943 chr17 3812926 3813030 + 0 NA 3' UTR (NM_001114118, exon 13 of 13) 3' UTR (NM_001114118, exon 13 of 13) -11735 NM_002208 3682 Hs.513867 NM_002208 ENSG00000083457 ITGAE CD103|HUMINAE integrin subunit alpha E protein-coding 27224 chr7 151039411 151039515 + 0 NA intron (NM_007188, intron 9 of 15) intron (NM_007188, intron 9 of 15) -8829 NM_004769 9311 Hs.647113 NM_004769 ENSG00000213199 ASIC3 ACCN3|DRASIC|SLNAC1|TNaC1 acid sensing ion channel subunit 3 protein-coding 3205 chr10 4354481 4354577 + 0 NA Intergenic Intergenic -29717 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 4995 chr11 20013545 20013649 + 0 NA intron (NM_182964, intron 11 of 37) intron (NM_182964, intron 11 of 37) -8959 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 22447 chr5 41870436 41870625 + 0 NA 5' UTR (NM_000436, exon 1 of 17) 5' UTR (NM_000436, exon 1 of 17) 159 NM_000436 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 137 chr1 9766949 9767027 + 0 NA intron (NM_001009566, intron 2 of 18) intron (NM_001009566, intron 2 of 18) 57538 NM_001009566 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 1414 chr1 100949593 100949697 + 0 NA intron (NM_133496, intron 8 of 10) L1PA6|LINE|L1 53567 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 15402 chr2 39631923 39632008 + 0 NA Intergenic Intergenic -33533 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 14763 chr19 53431914 53431996 + 0 NA promoter-TSS (NR_003148) promoter-TSS (NR_003148) -19 NM_001289951 388561 Hs.433293 NM_001008401 ENSG00000160336 ZNF761 ZNF468 zinc finger protein 761 protein-coding 21656 chr4 104728517 104728618 + 0 NA Intergenic Intergenic -233666 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 4504 chr10 121078996 121079004 + 0 NA Intergenic Intergenic -227821 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 7443 chr12 93723331 93723435 + 0 NA intron (NR_110093, intron 2 of 2) LTR8|LTR|ERV1 14440 NR_110093 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 8059 chr13 30674004 30674140 + 0 NA Intergenic CpG -39406 NM_001204406 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 26059 chr7 36474155 36474281 + 0 NA Intergenic HERVL18-int|LTR|ERVL -84093 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 28764 chr8 140591416 140591585 + 0 NA intron (NM_001164623, intron 1 of 17) intron (NM_001164623, intron 1 of 17) 44047 NM_012154 27161 Hs.743313 NM_012154 ENSG00000123908 AGO2 EIF2C2|Q10 argonaute 2, RISC catalytic component protein-coding 18654 chr22 20569143 20569272 + 0 NA intron (NM_001293234, intron 8 of 16) intron (NM_001293234, intron 8 of 16) 61159 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 1074 chr1 67685084 67685195 + 0 NA promoter-TSS (NM_001924) promoter-TSS (NM_001924) -38 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 27511 chr8 22582101 22582205 + 0 NA intron (NM_198042, intron 2 of 7) intron (NM_198042, intron 2 of 7) 1679 NM_176871 64236 Hs.632034 NM_021630 ENSG00000120913 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 protein-coding 19974 chr3 119084918 119085024 + 0 NA intron (NM_152538, intron 3 of 8) L1PA16|LINE|L1 -50142 NM_001015887 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 15979 chr2 96760653 96760788 + 0 NA promoter-TSS (NM_020184) promoter-TSS (NM_020184) -182 NM_020184 26504 Hs.175043 NM_020184 ENSG00000158158 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 12327 chr17 32350036 32350163 + 0 NA promoter-TSS (NR_030362) promoter-TSS (NR_030362) -10 NR_030362 693217 NR_030362 ENSG00000010244 MIR632 MIRN632|hsa-mir-632 microRNA 632 ncRNA 30896 chrX 103442015 103442094 + 0 NA Intergenic MSTD-int|LTR|ERVL-MaLR 64873 NM_014380 27018 Hs.448588 NM_014380 ENSG00000166681 BEX3 Bex|DXS6984E|HGR74|NADE|NGFRAP1 brain expressed X-linked 3 protein-coding 18335 chr20 58818853 58818961 + 0 NA promoter-TSS (NR_030580) promoter-TSS (NR_030580) -594 NR_030580 100126296 NR_030580 ENSG00000216031 MIR298 MIRN298|hsa-mir-298 microRNA 298 ncRNA 16567 chr2 162344003 162344055 + 0 NA promoter-TSS (NM_012198) promoter-TSS (NM_012198) -44 NM_012198 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 2576 chr1 209816043 209816171 + 0 NA Intergenic Intergenic -9932 NM_006147 3664 Hs.591415 NM_006147 ENSG00000117595 IRF6 LPS|OFC6|PIT|PPS|PPS1|VWS|VWS1 interferon regulatory factor 6 protein-coding 3287 chr10 12043157 12043299 + 0 NA promoter-TSS (NM_080599) promoter-TSS (NM_080599) -58 NM_080599 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense transcripts homolog (yeast) protein-coding 8347 chr13 73399390 73399532 + 0 NA Intergenic Intergenic -164783 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 14698 chr19 49664657 49664760 + 0 NA promoter-TSS (NM_001282521) promoter-TSS (NM_001282521) -434 NM_001282517 83596 Hs.289052 NM_138639 ENSG00000126453 BCL2L12 - BCL2 like 12 protein-coding 28280 chr8 98944229 98944382 + 0 NA promoter-TSS (NM_001142462) promoter-TSS (NM_001142462) -98 NM_001286841 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 10705 chr15 90451500 90451651 + 0 NA intron (NM_003870, intron 11 of 37) MSTB2|LTR|ERVL-MaLR 63334 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 1601 chr1 119254481 119254585 + 0 NA intron (NR_125975, intron 4 of 6) intron (NR_125975, intron 4 of 6) -113861 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 TrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 23303 chr5 138338185 138338339 + 0 NA promoter-TSS (NM_001287583) promoter-TSS (NM_001287583) 93 NM_001287583 995 Hs.656 NM_001790 ENSG00000158402 CDC25C CDC25|PPP1R60 cell division cycle 25C protein-coding 12494 chr17 41679009 41679141 + 0 NA Intergenic LTR73|LTR|ERV1 -9800 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 6904 chr12 43836275 43836371 + 0 NA intron (NM_032256, intron 1 of 7) CpG 462 NM_001286213 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 2467 chr1 204507057 204507187 + 0 NA Intergenic Intergenic -9257 NM_001278518 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 5292 chr11 58394374 58394478 + 0 NA Intergenic Intergenic 8983 NM_001005469 441608 Hs.553826 NM_001005469 ENSG00000172769 OR5B3 OR11-239|OR5B13|OST129 olfactory receptor family 5 subfamily B member 3 protein-coding 8785 chr14 30550427 30550531 + 0 NA Intergenic Intergenic -8644 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 5196 chr11 43328181 43328214 + 0 NA intron (NM_006595, intron 8 of 13) intron (NM_006595, intron 8 of 13) 16242 NM_006595 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 17378 chr2 239465325 239465429 + 0 NA Intergenic Intergenic 63629 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 LOC101928111 - uncharacterized LOC101928111 ncRNA 31065 chrX 132023084 132023229 + 0 NA promoter-TSS (NM_001042452) promoter-TSS (NM_001042452) -61 NM_001042453 51765 Hs.444247 NM_016542 ENSG00000134602 STK26 MASK|MST4 serine/threonine kinase 26 protein-coding 29630 chr9 96655328 96655432 + 0 NA promoter-TSS (NM_153698) promoter-TSS (NM_153698) -63 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 AAED1 C9orf21 AhpC/TSA antioxidant enzyme domain containing 1 protein-coding 27006 chr7 130363538 130363722 + 0 NA intron (NM_001127442, intron 9 of 10) intron (NM_001127442, intron 9 of 10) 3497 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 1283 chr1 90393120 90393224 + 0 NA Intergenic Intergenic 324065 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 19332 chr3 34012205 34012309 + 0 NA Intergenic Intergenic 213686 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 16953 chr2 203943702 203943806 + 0 NA intron (NM_012092, intron 1 of 4) L1PBa1|LINE|L1 7006 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T-cell costimulator protein-coding 212 chr1 15617554 15617602 + 0 NA 5' UTR (NM_032341, exon 1 of 10) 5' UTR (NM_032341, exon 1 of 10) 120 NM_032341 84301 Hs.718857 NM_032341 ENSG00000197312 DDI2 - DNA damage inducible 1 homolog 2 protein-coding 12409 chr17 37643398 37643528 + 0 NA promoter-TSS (NM_001291476).2 promoter-TSS (NM_001291476).2 1 NM_007010 11056 Hs.590937 NM_007010 ENSG00000278053 DDX52 HUSSY19|ROK1 DExD-box helicase 52 protein-coding 24389 chr6 32128258 32128404 + 0 NA promoter-TSS (NM_001136153).3 promoter-TSS (NM_001136153).3 -91 NM_004381 1388 Hs.42853 NM_004381 ENSG00000213676 ATF6B CREB-RP|CREBL1|G13 activating transcription factor 6 beta protein-coding 18743 chr22 28009483 28009587 + 0 NA intron (NM_001145418, intron 14 of 22) intron (NM_001145418, intron 14 of 22) -88923 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 1331 chr1 94237599 94237703 + 0 NA promoter-TSS (NM_001328666) promoter-TSS (NM_001328666) 100 NM_004815 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 6934 chr12 47271332 47271461 + 0 NA Intergenic Intergenic 36003 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 9661 chr14 99683928 99684057 + 0 NA promoter-TSS (NM_006668) promoter-TSS (NM_006668) -426 NM_006668 10858 Hs.25121 NM_006668 ENSG00000036530 CYP46A1 CP46|CYP46 cytochrome P450 family 46 subfamily A member 1 protein-coding 9228 chr14 65290921 65291085 + 0 NA Intergenic Intergenic 44180 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 2383 chr1 201739758 201739862 + 0 NA promoter-TSS (NM_001167738) promoter-TSS (NM_001167738) -25 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 5108 chr11 33039466 33039620 + 0 NA promoter-TSS (NM_001145541) promoter-TSS (NM_001145541) 126 NM_018393 55346 Hs.655341 NM_018393 ENSG00000176148 TCP11L1 dJ85M6.3 t-complex 11 like 1 protein-coding 8392 chr13 77492992 77493175 + 0 NA Intergenic Intergenic -42591 NM_144777 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 16865 chr2 196260024 196260056 + 0 NA promoter-TSS (NR_110225) promoter-TSS (NR_110225) 16 NR_110226 101927482 Hs.191841 NR_110225 LOC101927482 - uncharacterized LOC101927482 ncRNA 16020 chr2 100883348 100883452 + 0 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 63249 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 961 chr1 59427321 59427461 + 0 NA intron (NM_001244714, intron 3 of 13) intron (NM_001244714, intron 3 of 13) -88238 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 4539 chr10 122879548 122879652 + 0 NA promoter-TSS (NM_001204364) promoter-TSS (NM_001204364) -33 NR_027282 399815 Hs.113871 NR_027282 LOC399815 - chromosome 10 open reading frame 88 pseudogene pseudo 8246 chr13 48303584 48303709 + 0 NA promoter-TSS (NR_046414) promoter-TSS (NR_046414) 15 NR_046414 100862704 Hs.374221 NR_046414 ENSG00000231473 LINC00441 ncRNA-RB1 long intergenic non-protein coding RNA 441 ncRNA 24659 chr6 47741863 47741939 + 0 NA Intergenic Intergenic -40138 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 11885 chr17 996645 996681 + 0 NA promoter-TSS (NM_013337).3 promoter-TSS (NM_013337).3 -230 NM_013337 29928 Hs.745034 NM_013337 ENSG00000177370 TIMM22 TEX4|TIM22 translocase of inner mitochondrial membrane 22 protein-coding 6378 chr11 131423899 131423963 + 0 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) 53455 NM_001048209 50863 Hs.504352 NM_016522 ENSG00000182667 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 30542 chrX 19991105 19991252 + 0 NA Intergenic CpG -1399 NR_024440 729609 Hs.554726 NR_024440 LOC729609 - uncharacterized LOC729609 ncRNA 26077 chr7 38178090 38178241 + 0 NA promoter-TSS (NM_032016) promoter-TSS (NM_032016) -41 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 6803 chr12 28058014 28058118 + 0 NA Intergenic Intergenic -86083 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 10371 chr15 70099679 70099783 + 0 NA Intergenic CpG-8376 -1814 NM_001105192 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 6465 chr12 3458121 3458177 + 0 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -33049 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 28090 chr8 80927625 80927729 + 0 NA Intergenic Intergenic -52896 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 18789 chr22 30649500 30649616 + 0 NA intron (NM_001318370, intron 2 of 2) intron (NM_001318370, intron 2 of 2) 13743 NM_001318370 339665 Hs.660384 NM_001001479 ENSG00000100036 SLC35E4 - solute carrier family 35 member E4 protein-coding 5365 chr11 62500322 62500541 + 0 NA intron (NM_024060, intron 4 of 5) intron (NM_024060, intron 4 of 5) 45256 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 15842 chr2 74845508 74845662 + 0 NA intron (NM_000189, intron 1 of 17) intron (NM_000189, intron 1 of 17) 12930 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 28730 chr8 133453407 133453511 + 0 NA Intergenic Intergenic 118481 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 22840 chr5 87300904 87301008 + 0 NA intron (NM_022650, intron 1 of 24) intron (NM_022650, intron 1 of 24) 22672 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 27409 chr8 12601434 12601538 + 0 NA intron (NR_047662, intron 5 of 8) CpG-27011 64125 NR_047662 729732 Hs.322761 NR_047662 ENSG00000283674 LOC729732 - uncharacterized LOC729732 ncRNA 12512 chr17 42019999 42019999 + 0 NA promoter-TSS (NM_001144927) promoter-TSS (NM_001144927) -70 NM_001144927 28511 Hs.632252 NM_017595 ENSG00000168256 NKIRAS2 KBRAS2|kappaB-Ras2 NFKB inhibitor interacting Ras like 2 protein-coding 21052 chr3 196318226 196318363 + 0 NA promoter-TSS (NM_152773) promoter-TSS (NM_152773) 0 NM_152773 255758 Hs.733180 NM_152773 ENSG00000213123 TCTEX1D2 - Tctex1 domain containing 2 protein-coding 18530 chr21 38797651 38797755 + 0 NA Intergenic MIRc|SINE|MIR -7604 NM_001256295 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding 18247 chr20 53621832 53621936 + 0 NA intron (NR_134576, intron 2 of 2) intron (NR_134576, intron 2 of 2) 13530 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 3928 chr10 75294996 75295122 + 0 NA intron (NR_120651, intron 1 of 3) CpG -1324 NR_038224 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 5093 chr11 32131433 32131573 + 0 NA Intergenic L1PA16|LINE|L1 12409 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 14714 chr19 50173203 50173335 + 0 NA Intergenic Intergenic -9988 NM_152358 126123 Hs.414175 NM_152358 ENSG00000161652 IZUMO2 C19orf41|PLAL6978|PRO21961|SCRL IZUMO family member 2 protein-coding 26408 chr7 73850883 73851056 + 0 NA Intergenic Intergenic -8444 NM_152559 155368 Hs.647042 NM_152559 ENSG00000165171 WBSCR27 - Williams Beuren syndrome chromosome region 27 protein-coding 24038 chr6 11318459 11318550 + 0 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 63844 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 30669 chrX 47482556 47482716 + 0 NA promoter-TSS (NR_126059) promoter-TSS (NR_126059) -80 NR_126059 203414 Hs.597617 NR_126059 LINC01560 CXorf24 long intergenic non-protein coding RNA 1560 ncRNA 26803 chr7 107891363 107891424 + 0 NA intron (NM_001289751, intron 1 of 12) CpG 286 NM_000108 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 31136 chrX 149829853 149829973 + 0 NA intron (NR_109813, intron 1 of 2) HERVIP10B3-int|LTR|ERV1 4205 NR_109813 101241891 Hs.744829 NR_109813 ENSG00000280752 LINC00850 KUCG1 long intergenic non-protein coding RNA 850 ncRNA 9951 chr15 41116642 41116746 + 0 NA promoter-TSS (NR_104038) promoter-TSS (NR_104038) -448 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 30097 chr9 124852937 124853079 + 0 NA promoter-TSS (NM_001045476) promoter-TSS (NM_001045476) -409 NM_001276376 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 23356 chr5 140664730 140664822 + 0 NA promoter-TSS (NM_017706) promoter-TSS (NM_017706) -23 NM_017706 54853 Hs.286261 NM_017706 ENSG00000120314 WDR55 - WD repeat domain 55 protein-coding 28737 chr8 133954489 133954658 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR 68077 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 21769 chr4 123418621 123418725 + 0 NA Intergenic Intergenic 19183 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 27460 chr8 18562504 18562608 + 0 NA intron (NM_015310, intron 14 of 15) intron (NM_015310, intron 14 of 15) 171311 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 29216 chr9 72525289 72525454 + 0 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 3570 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 23435 chr5 146042827 146042931 + 0 NA intron (NM_152550, intron 5 of 9) intron (NM_152550, intron 5 of 9) 61504 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 4940 chr11 17077725 17077872 + 0 NA promoter-TSS (NM_001017) promoter-TSS (NM_001017) -125 NM_001017 6207 Hs.446588 NM_001017 ENSG00000110700 RPS13 S13 ribosomal protein S13 protein-coding 477 chr1 28417526 28417630 + 0 NA intron (NM_001048183, intron 2 of 13) MER44B|DNA|TcMar-Tigger -20572 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 7233 chr12 66302401 66302581 + 0 NA promoter-TSS (NR_135080) promoter-TSS (NR_135080) -54 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 22168 chr5 3542393 3542497 + 0 NA Intergenic Intergenic -6351 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 20580 chr3 166663346 166663450 + 0 NA Intergenic LTR10A|LTR|ERV1 -235285 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 1338 chr1 94579991 94580068 + 0 NA Intergenic L1PA11|LINE|L1 -38172 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 10105 chr15 52019128 52019224 + 0 NA promoter-TSS (NM_002748) promoter-TSS (NM_002748) -38 NM_002748 5597 Hs.411847 NM_002748 ENSG00000069956 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 15861 chr2 76599839 76600005 + 0 NA Intergenic LTR41|LTR|ERVL -386043 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 16152 chr2 112627554 112627697 + 0 NA Intergenic Intergenic 16555 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 20801 chr3 183697630 183697734 + 0 NA promoter-TSS (NM_018023) promoter-TSS (NM_018023) -136 NM_018023 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 24811 chr6 78810871 78811028 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -56595 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 26184 chr7 44959719 44959823 + 0 NA Intergenic Intergenic 19334 NM_033054 64005 Hs.37617 NM_033054 ENSG00000136286 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 12617 chr17 47947070 47947199 + 0 NA 3' UTR (NM_018129, exon 7 of 7) 3' UTR (NM_018129, exon 7 of 7) 5611 NM_018129 55163 Hs.631742 NM_018129 ENSG00000108439 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 29405 chr9 84823889 84823971 + 0 NA intron (NM_001018064, intron 11 of 16) LTR16A2|LTR|ERVL 153553 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 27135 chr7 142025966 142026059 + 0 NA intron (NM_004668, intron 8 of 47) intron (NM_004668, intron 8 of 47) 30133 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 23484 chr5 149440001 149440157 + 0 NA Intergenic Intergenic 9433 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 8973 chr14 50312146 50312330 + 0 NA promoter-TSS (NM_024884) promoter-TSS (NM_024884) -9 NM_024884 79944 Hs.256034 NM_024884 ENSG00000087299 L2HGDH C14orf160|L2HGA L-2-hydroxyglutarate dehydrogenase protein-coding 7416 chr12 91818907 91819029 + 0 NA Intergenic Intergenic 322745 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 16611 chr2 168211270 168211401 + 0 NA intron (NM_013233, intron 1 of 17) intron (NM_013233, intron 1 of 17) 36260 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 23400 chr5 142362819 142362923 + 0 NA intron (NR_120664, intron 3 of 3) MIR|SINE|MIR 37578 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 LOC101926941 - uncharacterized LOC101926941 ncRNA 3416 chr10 23053203 23053307 + 0 NA Intergenic Intergenic -42243 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 7974 chr13 24053572 24053703 + 0 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) 74011 NR_104595 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 28109 chr8 82190707 82190811 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -348473 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 28208 chr8 94059441 94059628 + 0 NA Intergenic Intergenic 142483 NM_001161781 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 19188 chr3 14016995 14017157 + 0 NA intron (NR_002223, intron 1 of 2) L1PB1|LINE|L1 79769 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 27441 chr8 17665790 17665920 + 0 NA intron (NM_001330470, intron 2 of 8) intron (NM_001330470, intron 2 of 8) 10646 NM_001330470 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 14350 chr19 33177106 33177239 + 0 NA Intergenic CpG -17521 NM_002333 4037 Hs.515340 NM_002333 ENSG00000130881 LRP3 - LDL receptor related protein 3 protein-coding 449 chr1 27247547 27247643 + 0 NA intron (NM_015023, intron 1 of 15) L1PREC2|LINE|L1 13079 NM_001276252 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 25879 chr7 24966179 24966267 + 0 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 13989 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 24264 chr6 27865133 27865351 + 0 NA promoter-TSS (NM_003511) promoter-TSS (NM_003511) -87 NM_003511 8332 Hs.233568 NM_003511 ENSG00000276903 HIST1H2AL H2A.i|H2A/i|H2AFI|dJ193B12.9 histone cluster 1 H2A family member l protein-coding 23462 chr5 148383833 148383961 + 0 NA promoter-TSS (NM_030793) promoter-TSS (NM_030793) -38 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 20193 chr3 134308580 134308684 + 0 NA Intergenic Intergenic -57888 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor-like tyrosine kinase protein-coding 18117 chr20 46406607 46406766 + 0 NA 5' UTR (NM_001318253, exon 1 of 22) 5' UTR (NM_001318253, exon 1 of 22) 365 NM_001318253 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 7524 chr12 100995370 100995426 + 0 NA intron (NM_001286616, intron 7 of 26) L2a|LINE|L2 93752 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 1574 chr1 116373147 116373251 + 0 NA promoter-TSS (NM_000701) promoter-TSS (NM_000701) 26 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 - ATPase Na+/K+ transporting subunit alpha 1 protein-coding 17085 chr2 216540028 216540132 + 0 NA Intergenic Intergenic 41283 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 1579 chr1 116571099 116571167 + 0 NA promoter-TSS (NR_026665) promoter-TSS (NR_026665) -40 NM_001144822 965 Hs.34341 NM_001779 ENSG00000116815 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 6536 chr12 6867437 6867587 + 0 NA promoter-TSS (NM_001159287) promoter-TSS (NM_001159287) -17 NM_000365 7167 Hs.524219 NM_000365 ENSG00000111669 TPI1 HEL-S-49|TIM|TPI|TPID triosephosphate isomerase 1 protein-coding 7438 chr12 93467354 93467494 + 0 NA promoter-TSS (NM_014050) promoter-TSS (NM_014050) -66 NR_038160 28977 Hs.199579 NM_014050 ENSG00000198015 MRPL42 HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT mitochondrial ribosomal protein L42 protein-coding 25831 chr7 22208906 22208998 + 0 NA intron (NM_012294, intron 9 of 25) intron (NM_012294, intron 9 of 25) 147962 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 29720 chr9 101486286 101486357 + 0 NA intron (NM_001303107, intron 1 of 2) CpG 449 NM_001303108 84302 Hs.388742 NM_032342 ENSG00000165152 TMEM246 C9orf125 transmembrane protein 246 protein-coding 13651 chr18 59263752 59263856 + 0 NA Intergenic Intergenic 9589 NM_013435 30062 Hs.278957 NM_013435 ENSG00000134438 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 9795 chr15 28456967 28457035 + 0 NA intron (NR_031672, intron 1 of 2) intron (NR_031672, intron 1 of 2) 30510 NR_039732 100616223 NR_039732 ENSG00000276941 MIR4509-1 - microRNA 4509-1 ncRNA 14338 chr19 31675197 31675301 + 0 NA Intergenic Intergenic 82968 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 15137 chr2 20141612 20141661 + 0 NA Intergenic Intergenic 83530 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 2989 chr1 234600209 234600339 + 0 NA Intergenic CpG 9251 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 11231 chr16 30610534 30610540 + 0 NA promoter-TSS (NR_104166) promoter-TSS (NR_104166) -104 NR_073482 115509 Hs.454685 NM_138447 ENSG00000156853 ZNF689 TIPUH1 zinc finger protein 689 protein-coding 29103 chr9 38096320 38096435 + 0 NA Intergenic Intergenic -27164 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 2833 chr1 225694306 225694320 + 0 NA Intergenic Intergenic -41170 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 28890 chr9 4345113 4345237 + 0 NA Intergenic L2a|LINE|L2 -45140 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 19944 chr3 115819884 115820038 + 0 NA intron (NM_001318915, intron 7 of 8) intron (NM_001318915, intron 7 of 8) 196657 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 8356 chr13 74134964 74135057 + 0 NA Intergenic CpG -1081 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 26485 chr7 79876891 79876995 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -257881 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 24185 chr6 22888291 22888395 + 0 NA Intergenic Intergenic -170419 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 3914 chr10 74190153 74190289 + 0 NA intron (NM_001123, intron 1 of 10) L1MB7|LINE|L1 13732 NM_001202449 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 14052 chr19 9621163 9621291 + 0 NA promoter-TSS (NM_152289) promoter-TSS (NM_152289) 13 NM_152289 93134 Hs.720081 NM_152289 ENSG00000171469 ZNF561 - zinc finger protein 561 protein-coding 14274 chr19 18571600 18571704 + 0 NA promoter-TSS (NM_001321017) promoter-TSS (NM_001321017) -78 NM_001321017 7311 Hs.5308 NM_003333 ENSG00000221983 UBA52 CEP52|HUBCEP52|L40|RPL40 ubiquitin A-52 residue ribosomal protein fusion product 1 protein-coding 3692 chr10 52864563 52864686 + 0 NA Intergenic Intergenic -92924 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 5770 chr11 85686156 85686263 + 0 NA promoter-TSS (NM_152723) promoter-TSS (NM_152723) 68 NM_152723 220388 Hs.376241 NM_152723 ENSG00000179071 CCDC89 - coiled-coil domain containing 89 protein-coding 8065 chr13 30802968 30803151 + 0 NA promoter-TSS (NR_047012) promoter-TSS (NR_047012) -147 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 28356 chr8 102863029 102863133 + 0 NA intron (NM_001301668, intron 1 of 11) CpG 1119 NM_001301668 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 23755 chr5 174532624 174532794 + 0 NA Intergenic Intergenic -191863 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 3726 chr10 59709804 59709908 + 0 NA promoter-TSS (NM_194298) promoter-TSS (NM_194298) 35 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 5406 chr11 63681391 63681421 + 0 NA promoter-TSS (NM_006054) promoter-TSS (NM_006054) -44 NM_006054 10313 Hs.743229 NM_006054 ENSG00000133318 RTN3 ASYIP|HAP|NSPL2|NSPLII|RTN3-A1 reticulon 3 protein-coding 12612 chr17 47895828 47895932 + 0 NA promoter-TSS (NM_003110) promoter-TSS (NM_003110) -64 NR_135480 102724532 Hs.729067 NR_135480 ENSG00000264920 LOC102724532 - uncharacterized LOC102724532 ncRNA 10698 chr15 90387957 90388095 + 0 NA promoter-TSS (NM_003870) promoter-TSS (NM_003870) -215 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 20493 chr3 157089141 157089216 + 0 NA promoter-TSS (NR_034008) promoter-TSS (NR_034008) -703 NR_034008 100498859 Hs.633655 NR_034008 ENSG00000241135 LINC00881 - long intergenic non-protein coding RNA 881 ncRNA 27075 chr7 137899216 137899320 + 0 NA intron (NM_194071, intron 8 of 11) intron (NM_194071, intron 8 of 11) 33720 NM_001318246 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 20599 chr3 168989537 168989641 + 0 NA Intergenic Intergenic 87644 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 7906 chr12 132153969 132154121 + 0 NA Intergenic Intergenic 9618 NM_024078 79050 Hs.558536 NM_024078 ENSG00000184967 NOC4L NET49|NOC4|UTP19 nucleolar complex associated 4 homolog protein-coding 10815 chr15 100918112 100918216 + 0 NA non-coding (NR_135831, exon 1 of 2) non-coding (NR_135831, exon 1 of 2) -1051 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 12593 chr17 45894357 45894401 + 0 NA promoter-TSS (NM_001203251).2 promoter-TSS (NM_001203251).2 -3 NM_005910 4137 Hs.101174 NM_005910 ENSG00000186868 MAPT DDPAC|FTDP-17|MAPTL|MSTD|MTBT1|MTBT2|PPND|PPP1R103|TAU microtubule associated protein tau protein-coding 2944 chr1 231528532 231528663 + 0 NA promoter-TSS (NR_028396) promoter-TSS (NR_028396) -56 NR_028395 100303453 Hs.13318 NR_028393 ENSG00000270106 TSNAX-DISC1 - TSNAX-DISC1 readthrough (NMD candidate) ncRNA 28511 chr8 119208131 119208294 + 0 NA promoter-TSS (NM_052886) promoter-TSS (NM_052886) -159 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding 20477 chr3 156579672 156579820 + 0 NA Intergenic Intergenic -24546 NM_001308197 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 3144 chr1 247008042 247008207 + 0 NA promoter-TSS (NM_001204221) promoter-TSS (NM_001204221) -31 NM_020394 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 17082 chr2 216114851 216115021 + 0 NA intron (NM_021141, intron 2 of 20) MER50C|LTR|ERV1 5639 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 5059 chr11 28146268 28146372 + 0 NA intron (NM_152636, intron 3 of 7) intron (NM_152636, intron 3 of 7) 38069 NM_001297775 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 30440 chrX 1452937 1452957 + 0 NA promoter-TSS (NM_001173474) promoter-TSS (NM_001173474) 30 NM_001173474 8623 Hs.533514 NM_004192 ENSG00000169093 ASMTL ASMTLX|ASMTLY|ASTML acetylserotonin O-methyltransferase-like protein-coding 9603 chr14 94543582 94543659 + 0 NA Intergenic Intergenic -17800 NM_006215 5267 Hs.719893 NM_006215 ENSG00000100665 SERPINA4 KAL|KLST|KST|PI-4|PI4|kallistatin serpin family A member 4 protein-coding 20177 chr3 133480243 133480395 + 0 NA intron (NR_135276, intron 1 of 4) intron (NR_135276, intron 1 of 4) 10827 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 12671 chr17 50397436 50397585 + 0 NA promoter-TSS (NM_018509) promoter-TSS (NM_018509) 43 NM_018509 55379 Hs.370927 NM_018509 ENSG00000108829 LRRC59 PRO1855|p34 leucine rich repeat containing 59 protein-coding 11050 chr16 14974950 14975085 + 0 NA promoter-TSS (NM_001285450) promoter-TSS (NM_001285450) 54 NM_001285450 23042 Hs.370781 NM_015027 ENSG00000179889 PDXDC1 LP8165 pyridoxal dependent decarboxylase domain containing 1 protein-coding 31134 chrX 149540869 149540973 + 0 NA promoter-TSS (NM_001324278) promoter-TSS (NM_001324278) -53 NM_178124 91966 Hs.458216 NM_178124 ENSG00000197620 CXorf40A CXorf40|EOLA1|FLJ16423 chromosome X open reading frame 40A protein-coding 7156 chr12 57165902 57166006 + 0 NA intron (NM_002332, intron 16 of 88) intron (NM_002332, intron 16 of 88) -18335 NR_131939 105751187 Hs.609540 NR_131938 ENSG00000259125 LRP1-AS - LRP1 antisense RNA ncRNA 25595 chr7 5418587 5418614 + 0 NA intron (NM_001080495, intron 2 of 29) MIRc|SINE|MIR 4946 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 6663 chr12 14260501 14260704 + 0 NA Intergenic Intergenic -105030 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 8836 chr14 34113353 34113457 + 0 NA Intergenic Intergenic -162327 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 27512 chr8 22597410 22597436 + 0 NA 3' UTR (NM_176871, exon 10 of 10) 3' UTR (NM_176871, exon 10 of 10) -2178 NM_173686 541565 Hs.743508 NM_173686 ENSG00000241852 C8orf58 - chromosome 8 open reading frame 58 protein-coding 24698 chr6 52918449 52918546 + 0 NA Intergenic HERV17-int|LTR|ERV1 -8799 NM_000847 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 30465 chrX 7446904 7447008 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 194483 NM_001320754 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase (microsomal), isozyme S protein-coding 26901 chr7 120053192 120053296 + 0 NA Intergenic LTR4|LTR|ERV1 -145869 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LVCAT5 - liver cancer-associated transcript 5 ncRNA 14731 chr19 50952923 50952993 + 0 NA 5' UTR (NM_012427, exon 1 of 6) 5' UTR (NM_012427, exon 1 of 6) 130 NM_012427 25818 Hs.50915 NM_012427 ENSG00000167754 KLK5 KLK-L2|KLKL2|SCTE kallikrein related peptidase 5 protein-coding 21199 chr4 15525251 15525355 + 0 NA intron (NM_001080522, intron 12 of 37) intron (NM_001080522, intron 12 of 37) 55438 NM_020785 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 2200 chr1 182962682 182962786 + 0 NA Intergenic Intergenic -9209 NM_001345928 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 7857 chr12 124939703 124939828 + 0 NA Intergenic Intergenic 24218 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 6926 chr12 46268988 46269136 + 0 NA 5' UTR (NM_001077484, exon 1 of 17) 5' UTR (NM_001077484, exon 1 of 17) 363 NM_001278387 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 25382 chr6 155185687 155185772 + 0 NA intron (NM_012454, intron 13 of 25) intron (NM_012454, intron 13 of 25) -31234 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 736 chr1 42658253 42658357 + 0 NA promoter-TSS (NM_001330510) promoter-TSS (NM_001330510) -72 NM_006347 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 8310 chr13 59531640 59531744 + 0 NA Intergenic L2b|LINE|L2 -481026 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 13062 chr17 77834657 77834761 + 0 NA Intergenic Intergenic 49378 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 26566 chr7 90346615 90346749 + 0 NA promoter-TSS (NM_001042717) promoter-TSS (NM_001042717) 17 NM_033107 85865 Hs.593547 NM_033107 ENSG00000105793 GTPBP10 ObgH2|UG0751c10 GTP binding protein 10 protein-coding 2847 chr1 226083529 226083633 + 0 NA Intergenic CpG 20854 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 26074 chr7 38107578 38107729 + 0 NA Intergenic Intergenic -70553 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 23036 chr5 113294882 113295017 + 0 NA promoter-TSS (NM_002387) promoter-TSS (NM_002387) -34 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 mutated in colorectal cancers protein-coding 16047 chr2 102064346 102064450 + 0 NA Intergenic Intergenic -5978 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 21185 chr4 13484651 13484755 + 0 NA promoter-TSS (NM_001017979) promoter-TSS (NM_001017979) -338 NM_001159601 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 11911 chr17 2218574 2218714 + 0 NA intron (NM_017575, intron 10 of 18) intron (NM_017575, intron 10 of 18) -14034 NR_110888 101927839 Hs.665648 NR_110888 ENSG00000225084 LOC101927839 - uncharacterized LOC101927839 ncRNA 24091 chr6 14930617 14930702 + 0 NA Intergenic Intergenic -315316 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 21960 chr4 159655616 159655720 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR 387822 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 12501 chr17 41773291 41773471 + 0 NA intron (NM_002230, intron 1 of 13) intron (NM_002230, intron 1 of 13) 13331 NM_002230 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 11875 chr17 789954 790083 + 0 NA intron (NM_018146, intron 3 of 3) intron (NM_018146, intron 3 of 3) -7687 NM_016080 51031 Hs.279061 NM_016080 ENSG00000167699 GLOD4 C17orf25|CGI-150|HC71 glyoxalase domain containing 4 protein-coding 9157 chr14 61562962 61563083 + 0 NA non-coding (NR_110416, exon 4 of 5) non-coding (NR_110416, exon 4 of 5) 7172 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 29687 chr9 99211766 99211828 + 0 NA Intergenic L1MA4A|LINE|L1 10167 NM_033087 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2, alpha-1,3/1,6-mannosyltransferase protein-coding 20774 chr3 182389540 182389699 + 0 NA Intergenic Intergenic 96743 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 29205 chr9 72149387 72149491 + 0 NA promoter-TSS (NM_001242505) promoter-TSS (NM_001242505) 88 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GUANASE|NEDASIN guanine deaminase protein-coding 17950 chr20 36605591 36605813 + 0 NA promoter-TSS (NM_001199534) promoter-TSS (NM_001199534) -32 NM_001199534 55969 Hs.584985 NM_018840 ENSG00000101084 C20orf24 PNAS-11|RIP5 chromosome 20 open reading frame 24 protein-coding 19611 chr3 59559919 59560024 + 0 NA Intergenic Intergenic -509982 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 11783 chr16 85027686 85027790 + 0 NA promoter-TSS (NM_001297766) promoter-TSS (NM_001297766) -13 NM_001286566 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 30685 chrX 48597733 48597837 + 0 NA promoter-TSS (NM_001166426) promoter-TSS (NM_001166426) -24 NM_001166426 64743 Hs.521973 NM_017883 ENSG00000101940 WDR13 MG21 WD repeat domain 13 protein-coding 2642 chr1 212656122 212656226 + 0 NA Intergenic Intergenic 31727 NM_153606 149647 Hs.129293 NM_153606 ENSG00000162771 FAM71A GARI-L4 family with sequence similarity 71 member A protein-coding 4714 chr11 3905196 3905270 + 0 NA intron (NM_001277961, intron 1 of 11) L2|LINE|L2 49171 NR_039835 100616453 NR_039835 ENSG00000167323 MIR4687 - microRNA 4687 ncRNA 16064 chr2 105396853 105397005 + 0 NA intron (NM_001318899, intron 1 of 7) intron (NM_001318899, intron 1 of 7) 2189 NM_001039492 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 19418 chr3 42684002 42684145 + 0 NA Intergenic Intergenic -1446 NM_152393 131377 Hs.350288 NM_152393 ENSG00000157119 KLHL40 KBTBD5|NEM8|SRYP|SYRP kelch like family member 40 protein-coding 5494 chr11 65744551 65744658 + 0 NA Intergenic MER52A|LTR|ERV1 -23666 NM_032193 84153 Hs.718438 NM_032193 ENSG00000172922 RNASEH2C AGS3|AYP1 ribonuclease H2 subunit C protein-coding 7698 chr12 116738079 116738183 + 0 NA promoter-TSS (NM_024738) promoter-TSS (NM_024738) -61 NM_024738 79794 Hs.592011 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 30121 chr9 126348235 126348339 + 0 NA intron (NM_033446, intron 2 of 9) intron (NM_033446, intron 2 of 9) 21443 NM_033446 89853 Hs.162659 NM_033446 ENSG00000196814 MVB12B C9orf28|FAM125B multivesicular body subunit 12B protein-coding 18136 chr20 47501751 47501932 + 0 NA promoter-TSS (NM_001174088) promoter-TSS (NM_001174088) -16 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 12696 chr17 51166263 51166381 + 0 NA promoter-TSS (NM_002512) promoter-TSS (NM_002512) 50 NM_001198682 4831 Hs.463456 NM_002512 ENSG00000243678 NME2 NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF NME/NM23 nucleoside diphosphate kinase 2 protein-coding 22328 chr5 27494949 27495053 + 0 NA intron (NR_038848, intron 4 of 4) intron (NR_038848, intron 4 of 4) 22709 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 LINC01021 - long intergenic non-protein coding RNA 1021 ncRNA 175 chr1 12019230 12019355 + 0 NA promoter-TSS (NM_021933) promoter-TSS (NM_021933) 50 NM_021933 60672 Hs.8595 NM_021933 ENSG00000116691 MIIP IIP45 migration and invasion inhibitory protein protein-coding 6871 chr12 39426995 39427099 + 0 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 16343 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 584 chr1 33255578 33255709 + 0 NA promoter-TSS (NM_152493) promoter-TSS (NM_152493) -930 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 26698 chr7 100247470 100247644 + 0 NA intron (NR_028038, intron 1 of 6) intron (NR_028038, intron 1 of 6) 24675 NR_028040 352954 Hs.556063 NM_178831 ENSG00000239521 GATS STAG3OS GATS, stromal antigen 3 opposite strand protein-coding 14124 chr19 11694894 11695048 + 0 NA Intergenic CpG 20973 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 8114 chr13 36297769 36297873 + 0 NA promoter-TSS (NM_001144982) promoter-TSS (NM_001144982) 34 NM_001198910 100526761 Hs.124519 NM_001198910 ENSG00000250709 CCDC169-SOHLH2 C13orf38-SOHLH2 CCDC169-SOHLH2 readthrough protein-coding 8933 chr14 45048640 45048744 + 0 NA intron (NM_001308120, intron 14 of 19) MLT1E2|LTR|ERVL-MaLR -35407 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 23800 chr5 178113444 178113548 + 0 NA promoter-TSS (NM_015111) promoter-TSS (NM_015111) -59 NM_015111 23138 Hs.101761 NM_015111 ENSG00000145911 N4BP3 LZTS4 NEDD4 binding protein 3 protein-coding 23762 chr5 175344543 175344662 + 0 NA Intergenic MER77|LTR|ERVL 99558 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 14883 chr19 58572833 58572937 + 0 NA intron (NR_027334, intron 5 of 5) CpG 690 NM_003422 7593 Hs.399810 NM_003422 ENSG00000099326 MZF1 MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6 myeloid zinc finger 1 protein-coding 15948 chr2 88825083 88825187 + 0 NA Intergenic Intergenic 12765 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 1882 chr1 158652972 158653099 + 0 NA intron (NM_003126, intron 22 of 51) intron (NM_003126, intron 22 of 51) 33681 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 10353 chr15 68991849 68991991 + 0 NA intron (NR_033672, intron 2 of 16) LTR76|LTR|ERV1 -22775 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 22220 chr5 10627821 10627925 + 0 NA intron (NM_001164440, intron 2 of 3) intron (NM_001164440, intron 2 of 3) 63550 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 4033 chr10 87818198 87818287 + 0 NA promoter-TSS (NM_001321968) promoter-TSS (NM_001321968) -11 NR_135914 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|THORASE ATPase family, AAA domain containing 1 protein-coding 29134 chr9 69155432 69155569 + 0 NA intron (NM_001170414, intron 2 of 21) MER5A|DNA|hAT-Charlie -18555 NM_201629 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 18104 chr20 45885075 45885179 + 0 NA 3' UTR (NM_080603, exon 2 of 2) 3' UTR (NM_080603, exon 2 of 2) 2472 NM_080608 128497 Hs.128235 NM_080608 ENSG00000149634 SPATA25 C20orf165|TSG23|dJ337O18.8 spermatogenesis associated 25 protein-coding 19251 chr3 23129941 23130045 + 0 NA Intergenic Intergenic 72585 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 6321 chr11 128342719 128342823 + 0 NA Intergenic Intergenic 179539 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 29204 chr9 72140755 72140859 + 0 NA intron (NM_001242507, intron 1 of 13) intron (NM_001242507, intron 1 of 13) -8544 NM_001242506 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GUANASE|NEDASIN guanine deaminase protein-coding 14251 chr19 17797481 17797667 + 0 NA intron (NM_014256, intron 1 of 2) intron (NM_014256, intron 1 of 2) 2464 NM_014256 10331 Hs.69009 NM_014256 ENSG00000179913 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 7883 chr12 130126162 130126199 + 0 NA Intergenic Intergenic 35498 NR_033834 440119 Hs.288262 NR_033834 ENSG00000250208 FZD10-AS1 - FZD10 antisense RNA 1 (head to head) ncRNA 25892 chr7 25262756 25262887 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -34335 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 19892 chr3 112676941 112677045 + 0 NA Intergenic Intergenic -35850 NM_199511 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 27536 chr8 23354034 23354138 + 0 NA intron (NM_002318, intron 3 of 13) intron (NM_002318, intron 3 of 13) 17878 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 20542 chr3 159829727 159829892 + 0 NA intron (NM_001197113, intron 5 of 10) Charlie15b|DNA|hAT-Charlie -10052 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 2670 chr1 214467279 214467430 + 0 NA intron (NM_005401, intron 1 of 18) MamSINE1|SINE|tRNA-RTE 84327 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 8569 chr13 106617662 106617766 + 0 NA promoter-TSS (NR_051977) promoter-TSS (NR_051977) -96 NR_051977 283483 Hs.651365 NR_051977 ENSG00000272274 LINC00551 - long intergenic non-protein coding RNA 551 ncRNA 27465 chr8 18720663 18720767 + 0 NA intron (NM_015310, intron 9 of 15) intron (NM_015310, intron 9 of 15) 88180 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 27421 chr8 13246880 13246882 + 0 NA intron (NM_182643, intron 5 of 17) intron (NM_182643, intron 5 of 17) 29667 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 23328 chr5 139661229 139661333 + 0 NA intron (NM_001317207, intron 1 of 2) CpG 1726 NM_001317206 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 28026 chr8 73420161 73420248 + 0 NA TTS (NM_001164380) TTS (NM_001164380) 130 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 28685 chr8 130444872 130444937 + 0 NA Intergenic Intergenic -1244 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 26018 chr7 33880887 33881053 + 0 NA Intergenic LTR37A|LTR|ERV1 -23941 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 30527 chrX 16712607 16712661 + 0 NA promoter-TSS (NM_175859) promoter-TSS (NM_175859) 44 NM_175859 56474 Hs.227049 NM_019857 ENSG00000047230 CTPS2 - CTP synthase 2 protein-coding 24017 chr6 10403756 10403952 + 0 NA intron (NM_001032280, intron 4 of 6) MIRb|SINE|MIR -8464 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 2972 chr1 233615163 233615237 + 0 NA intron (NM_002245, intron 1 of 2) intron (NM_002245, intron 1 of 2) 1196 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 16226 chr2 120237638 120237742 + 0 NA Intergenic Intergenic -14282 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 23454 chr5 147565607 147565711 + 0 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 5665 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 12855 chr17 64815604 64815758 + 0 NA intron (NR_024386, intron 4 of 10) intron (NR_024386, intron 4 of 10) 6421 NR_036271 100422961 NR_036271 MIR4315-2 - microRNA 4315-2 ncRNA 6617 chr12 12611786 12611878 + 0 NA promoter-TSS (NM_001310) promoter-TSS (NM_001310) -1 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 28643 chr8 127687326 127687442 + 0 NA Intergenic MIRb|SINE|MIR 46583 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 31190 chrX 154534918 154535053 + 0 NA intron (NM_001042351, intron 5 of 12) intron (NM_001042351, intron 5 of 12) -7255 NM_001321396 8517 Hs.43505 NM_003639 ENSG00000269335 IKBKG AMCBX1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|ZC2HC9 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma protein-coding 4453 chr10 118504678 118504831 + 0 NA Intergenic Intergenic 90894 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 9056 chr14 55271992 55272064 + 0 NA promoter-TSS (NM_152231) promoter-TSS (NM_152231) -126 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 20672 chr3 173395531 173395652 + 0 NA Intergenic CpG -2857 NM_014932 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 4973 chr11 19240957 19241119 + 0 NA promoter-TSS (NM_024680) promoter-TSS (NM_024680) -78 NM_024680 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 13047 chr17 76659928 76660032 + 0 NA Intergenic Intergenic -11948 NR_130916 105274304 Hs.572495 NR_130916 ENSG00000261335 LOC105274304 - uncharacterized LOC105274304 ncRNA 7245 chr12 68332395 68332514 + 0 NA promoter-TSS (NM_001205028) promoter-TSS (NM_001205028) -73 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 7657 chr12 110896692 110896796 + 0 NA intron (NM_152591, intron 9 of 11) MER5B|DNA|hAT-Charlie 23856 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 20186 chr3 133944900 133945004 + 0 NA intron (NM_005630, intron 10 of 13) intron (NM_005630, intron 10 of 13) -15140 NM_025041 80111 Hs.287691 NM_025041 ENSG00000221972 C3orf36 - chromosome 3 open reading frame 36 protein-coding 2683 chr1 215449295 215449399 + 0 NA Intergenic Intergenic -118032 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 20668 chr3 172685493 172685597 + 0 NA intron (NM_020792, intron 1 of 4) intron (NM_020792, intron 1 of 4) 25673 NM_001146278 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 11284 chr16 46973664 46973848 + 0 NA promoter-TSS (NM_005880) promoter-TSS (NM_005880) -42 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 17904 chr20 34579242 34579398 + 0 NA intron (NM_080476, intron 10 of 11) intron (NM_080476, intron 10 of 11) 20623 NM_032514 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 21650 chr4 103303208 103303312 + 0 NA Intergenic Intergenic -104851 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 8603 chr13 110138340 110138444 + 0 NA Intergenic CpG 85107 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 20851 chr3 185728007 185728111 + 0 NA intron (NR_126326, intron 5 of 7) intron (NR_126326, intron 5 of 7) 14807 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 3349 chr10 17100671 17100775 + 0 NA intron (NM_001081, intron 13 of 66) intron (NM_001081, intron 13 of 66) 29094 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 7057 chr12 53295457 53295561 + 0 NA promoter-TSS (NM_002624) promoter-TSS (NM_002624) 58 NM_002624 5204 Hs.655327 NM_002624 ENSG00000123349 PFDN5 MM-1|MM1|PFD5 prefoldin subunit 5 protein-coding 12676 chr17 50534336 50534512 + 0 NA intron (NM_017957, intron 1 of 9) intron (NM_017957, intron 1 of 9) 1737 NM_017957 55040 Hs.670090 NM_017957 ENSG00000049283 EPN3 - epsin 3 protein-coding 3644 chr10 46283003 46283157 + 0 NA Intergenic CpG -3917 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000274209 ANTXRL - anthrax toxin receptor-like protein-coding 2019 chr1 167714335 167714416 + 0 NA Intergenic CpG -7575 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 23016 chr5 111830525 111830533 + 0 NA intron (NM_001142474, intron 2 of 3) HERVL40-int|LTR|ERVL -72311 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 30822 chrX 72181616 72181764 + 0 NA promoter-TSS (NM_001170747) promoter-TSS (NM_001170747) 14 NM_006223 5303 Hs.655623 NM_006223 ENSG00000102309 PIN4 EPVH|PAR14|PAR17 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 protein-coding 19791 chr3 102715119 102715261 + 0 NA Intergenic Intergenic 280175 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 21067 chr3 197298590 197298666 + 0 NA promoter-TSS (NM_004087) promoter-TSS (NM_004087) -52 NM_001098424 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs large MAGUK scaffold protein 1 protein-coding 202 chr1 15200844 15200952 + 0 NA intron (NM_018022, intron 1 of 2) intron (NM_018022, intron 1 of 2) -29274 NM_001278502 727684 Hs.667584 NM_001278501 C1orf195 - chromosome 1 open reading frame 195 protein-coding 9989 chr15 43266987 43267036 + 0 NA promoter-TSS (NM_201631) promoter-TSS (NM_201631) -154 NM_004245 9333 Hs.129719 NM_004245 ENSG00000104055 TGM5 PSS2|TGASE5|TGASEX|TGM6|TGMX|TGX transglutaminase 5 protein-coding 12701 chr17 51746105 51746243 + 0 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 409459 NR_122104 440446 Hs.626751 NR_122104 ENSG00000225860 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 21419 chr4 68350020 68350124 + 0 NA promoter-TSS (NM_001031732) promoter-TSS (NM_001031732) 45 NM_001330698 91746 Hs.175955 NM_133370 ENSG00000083896 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 23813 chr5 178859901 178860117 + 0 NA promoter-TSS (NM_058230) promoter-TSS (NM_058230) 56 NM_058230 117608 Hs.724051 NM_058230 ENSG00000178338 ZNF354B KID2 zinc finger protein 354B protein-coding 18532 chr21 38805638 38805690 + 0 NA promoter-TSS (NM_005239) promoter-TSS (NM_005239) -167 NM_005239 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding 23772 chr5 176388645 176388799 + 0 NA non-coding (NR_134316, exon 1 of 4) non-coding (NR_134316, exon 1 of 4) 196 NM_138820 192286 Hs.534575 NM_138820 ENSG00000146066 HIGD2A RCF1b HIG1 hypoxia inducible domain family member 2A protein-coding 25899 chr7 25941087 25941227 + 0 NA Intergenic Intergenic 8829 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 8542 chr13 104571787 104571891 + 0 NA Intergenic Intergenic -894028 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 11657 chr16 75486110 75486248 + 0 NA intron (NM_021615, intron 1 of 2) intron (NM_021615, intron 1 of 2) 8849 NM_021615 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 MCDC1 carbohydrate sulfotransferase 6 protein-coding 25893 chr7 25804357 25804461 + 0 NA Intergenic Intergenic 145577 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 17779 chr20 23350521 23350625 + 0 NA promoter-TSS (NM_013248) promoter-TSS (NM_013248) -163 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 9648 chr14 99266634 99266738 + 0 NA intron (NM_022898, intron 1 of 2) intron (NM_022898, intron 1 of 2) 5027 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 19389 chr3 40387143 40387247 + 0 NA promoter-TSS (NM_001248) promoter-TSS (NM_001248) 39 NM_001248 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 20158 chr3 131381616 131381725 + 0 NA promoter-TSS (NR_038976) promoter-TSS (NR_038976) -1 NM_001171905 131870 Hs.282050 NM_152395 ENSG00000198585 NUDT16 - nudix hydrolase 16 protein-coding 5836 chr11 92111379 92111483 + 0 NA Intergenic L1PBa|LINE|L1 -240665 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 6229 chr11 122045446 122045541 + 0 NA intron (NR_137178, intron 3 of 4) intron (NR_137178, intron 3 of 4) 54351 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 21038 chr3 195870646 195870750 + 0 NA intron (NM_005781, intron 10 of 14) intron (NM_005781, intron 10 of 14) -10294 NR_134939 101929697 Hs.551750 NR_134939 LINC01983 - long intergenic non-protein coding RNA 1983 ncRNA 1463 chr1 109075999 109076127 + 0 NA promoter-TSS (NM_005645) promoter-TSS (NM_005645) -61 NM_005645 6884 Hs.632426 NM_005645 ENSG00000197780 TAF13 TAF(II)18|TAF2K|TAFII-18|TAFII18 TATA-box binding protein associated factor 13 protein-coding 10305 chr15 66027536 66027677 + 0 NA intron (NM_032445, intron 5 of 22) MER5A|DNA|hAT-Charlie -12627 NR_036196 100422905 NR_036196 ENSG00000263512 MIR4311 - microRNA 4311 ncRNA 24735 chr6 56542889 56543013 + 0 NA intron (NM_015548, intron 42 of 83) CpG 99945 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 28757 chr8 139950884 139951057 + 0 NA intron (NM_031466, intron 19 of 22) intron (NM_031466, intron 19 of 22) 149565 NR_144431 359809 Hs.26814 NR_144431 PEG13 - paternally expressed 13 ncRNA 6796 chr12 27973727 27973831 + 0 NA Intergenic Intergenic -1796 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 16175 chr2 113583991 113584095 + 0 NA promoter-TSS (NR_031632) promoter-TSS (NR_031632) 390 NR_024077 375260 Hs.446466 NM_198943 ENSG00000146556 WASH2P FAM39B WAS protein family homolog 2 pseudogene pseudo 15292 chr2 30165208 30165312 + 0 NA Intergenic Intergenic 18376 NM_016061 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 22947 chr5 98929474 98929498 + 0 NA non-coding (NR_036530, exon 1 of 1) non-coding (NR_036530, exon 1 of 1) 352 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA 6730 chr12 22410649 22410784 + 0 NA Intergenic Intergenic -76002 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 681 chr1 39408825 39408828 + 0 NA promoter-TSS (NM_015038) promoter-TSS (NM_015038) -678 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 15022 chr2 11863836 11863873 + 0 NA Intergenic Intergenic -26868 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 8765 chr14 24429880 24430011 + 0 NA promoter-TSS (NM_001039771) promoter-TSS (NM_001039771) 10 NM_001290257 23351 Hs.713590 NM_015299 ENSG00000100441 KHNYN KIAA0323 KH and NYN domain containing protein-coding 18872 chr22 37691077 37691181 + 0 NA intron (NM_024313, intron 5 of 5) intron (NM_024313, intron 5 of 5) 4792 NM_024313 79159 Hs.632778 NM_024313 ENSG00000100101 NOL12 Nop25|dJ37E16.7 nucleolar protein 12 protein-coding 8222 chr13 45847810 45847914 + 0 NA intron (NM_198849, intron 1 of 1) intron (NM_198849, intron 1 of 1) 3849 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 10078 chr15 50424201 50424305 + 0 NA promoter-TSS (NM_001128610) promoter-TSS (NM_001128610) -124 NM_005154 9101 Hs.443731 NM_005154 ENSG00000138592 USP8 HumORF8|SPG59|UBPY ubiquitin specific peptidase 8 protein-coding 27501 chr8 22179038 22179142 + 0 NA intron (NR_033404, intron 6 of 15) intron (NR_033404, intron 6 of 15) 13950 NR_033403 649 Hs.1274 NM_001199 ENSG00000168487 BMP1 OI13|PCOLC|PCP|PCP2|TLD bone morphogenetic protein 1 protein-coding 17699 chr20 18276868 18276972 + 0 NA Intergenic Intergenic -11363 NM_001282996 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 1029 chr1 64898246 64898349 + 0 NA intron (NM_001321852, intron 1 of 24) intron (NM_001321852, intron 1 of 24) 68272 NM_001321855 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 11165 chr16 25257436 25257540 + 0 NA promoter-TSS (NM_001012981) promoter-TSS (NM_001012981) 46 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 2715 chr1 218706254 218706414 + 0 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 263708 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 24406 chr6 33205598 33205702 + 0 NA exon (NM_014234, exon 5 of 9) exon (NM_014234, exon 5 of 9) 1013 NM_014234 7923 Hs.415058 NM_014234 ENSG00000204228 HSD17B8 D6S2245E|FABG|FABGL|H2-KE6|HKE6|KE6|RING2|SDR30C1|dJ1033B10.9 hydroxysteroid 17-beta dehydrogenase 8 protein-coding 18888 chr22 38178134 38178238 + 0 NA intron (NM_001199562, intron 1 of 15) intron (NM_001199562, intron 1 of 15) 3568 NM_001004426 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 3292 chr10 12321727 12321874 + 0 NA Intergenic Intergenic -27743 NM_020397 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 2105 chr1 175888052 175888156 + 0 NA Intergenic Intergenic 10761 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 26894 chr7 117998282 117998386 + 0 NA Intergenic Intergenic -124827 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 1957 chr1 162905847 162905951 + 0 NA Intergenic L2a|LINE|L2 -37084 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 554 chr1 32612250 32612385 + 0 NA Intergenic Intergenic 38273 NM_001308135 339487 Hs.655921 NM_178547 ENSG00000176261 ZBTB8OS ARCH|ARCH2 zinc finger and BTB domain containing 8 opposite strand protein-coding 26594 chr7 92590417 92590418 + 0 NA promoter-TSS (NM_001288584) promoter-TSS (NM_001288584) -23 NR_109929 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 12076 chr17 8210613 8210742 + 0 NA promoter-TSS (NM_001313953) promoter-TSS (NM_001313953) -51 NM_001313950 9212 Hs.442658 NM_004217 ENSG00000178999 AURKB AIK2|AIM-1|AIM1|ARK2|AurB|IPL1|PPP1R48|STK12|STK5|aurkb-sv1|aurkb-sv2 aurora kinase B protein-coding 3766 chr10 62733064 62733168 + 0 NA Intergenic Intergenic -71640 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 18705 chr22 24768961 24769043 + 0 NA intron (NR_045649, intron 1 of 21) intron (NR_045649, intron 1 of 21) 4501 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - topoisomerase (DNA) I pseudogene 2 pseudo 9105 chr14 58898720 58898824 + 0 NA intron (NR_110547, intron 2 of 5) MIR|SINE|MIR 70484 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 74 chr1 6199563 6199713 + 0 NA promoter-TSS (NM_000983) promoter-TSS (NM_000983) -19 NM_000983 6146 Hs.515329 NM_000983 ENSG00000116251 RPL22 EAP|HBP15|HBP15/L22|L22 ribosomal protein L22 protein-coding 30433 chrX 318961 319091 + 0 NA promoter-TSS (NR_027232) promoter-TSS (NR_027232) -119 NR_027231 283981 Hs.575741 NR_027231 LINC00685 CXYorf10|NCRNA00107|PPP2R3B-AS1 long intergenic non-protein coding RNA 685 ncRNA 11161 chr16 25048753 25048857 + 0 NA Intergenic Intergenic 17064 NR_038379 554206 Hs.552959 NR_038379 ENSG00000262587 LOC554206 - leucine carboxyl methyltransferase 1 pseudogene pseudo 17963 chr20 37295044 37295192 + 0 NA intron (NM_001003897, intron 1 of 2) intron (NM_001003897, intron 1 of 2) 5470 NM_022077 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 2024 chr1 167796217 167796340 + 0 NA Intergenic Intergenic 74328 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 14669 chr19 48954653 48954795 + 0 NA promoter-TSS (NM_001291431) promoter-TSS (NM_001291431) -136 NM_138763 581 Hs.624291 NM_004324 ENSG00000087088 BAX BCL2L4 BCL2 associated X, apoptosis regulator protein-coding 12178 chr17 18039143 18039252 + 0 NA promoter-TSS (NM_145691) promoter-TSS (NM_145691) -31 NM_145691 91647 Hs.528889 NM_145691 ENSG00000171953 ATPAF2 ATP12|ATP12p|LP3663|MC5DN1 ATP synthase mitochondrial F1 complex assembly factor 2 protein-coding 28613 chr8 126506530 126506689 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 51857 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 14318 chr19 24087053 24087191 + 0 NA promoter-TSS (NM_001278665) promoter-TSS (NM_001278665) -38 NM_001278664 9534 Hs.434406 NM_004876 ENSG00000213096 ZNF254 BMZF-5|HD-ZNF1|ZNF539|ZNF91L zinc finger protein 254 protein-coding 15016 chr2 11697573 11697677 + 0 NA intron (NM_001261428, intron 1 of 21) intron (NM_001261428, intron 1 of 21) 20046 NM_001261428 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 7643 chr12 110124312 110124464 + 0 NA promoter-TSS (NM_001143779) promoter-TSS (NM_001143779) 53 NM_001347948 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1 intraflagellar transport 81 protein-coding 6580 chr12 9448194 9448310 + 0 NA promoter-TSS (NR_033399) promoter-TSS (NR_033399) -80 NR_033399 440081 Hs.447869 NM_004400 DDX12P CHLR2|DDX12 DEAD/H-box helicase 12, pseudogene pseudo 8819 chr14 33466477 33466550 + 0 NA intron (NM_001164749, intron 4 of 11) intron (NM_001164749, intron 4 of 11) -242424 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 21987 chr4 167897205 167897331 + 0 NA Intergenic MER61C|LTR|ERV1 -195269 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 16610 chr2 168097523 168097627 + 0 NA intron (NM_013233, intron 10 of 17) AluJr|SINE|Alu 150020 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 7333 chr12 82412410 82412514 + 0 NA intron (NR_144941, intron 6 of 11) MER63A|DNA|hAT-Blackjack -53657 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 22171 chr5 5105662 5105766 + 0 NA Intergenic Intergenic -27403 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 29306 chr9 77458130 77458234 + 0 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 10533 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 27507 chr8 22367127 22367219 + 0 NA promoter-TSS (NM_001128431) promoter-TSS (NM_001128431) -76 NM_001135154 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 22817 chr5 82975930 82976034 + 0 NA Intergenic LTR10F|LTR|ERV1 88355 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 29161 chr9 70130445 70130549 + 0 NA intron (NR_125850, intron 6 of 13) MamSINE1|SINE|tRNA-RTE 45391 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 2815 chr1 224503670 224503852 + 0 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 68866 NM_001322303 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 10749 chr15 93929497 93929564 + 0 NA intron (NR_120320, intron 8 of 8) intron (NR_120320, intron 8 of 8) 28829 NR_120323 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 25776 chr7 18667591 18667695 + 0 NA 3' UTR (NM_001321891, exon 11 of 11) 3' UTR (NM_001321891, exon 11 of 11) 158370 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 25731 chr7 16203255 16203359 + 0 NA intron (NM_001101426, intron 9 of 9) MLT1K|LTR|ERVL-MaLR -7179 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 ISPD-AS1 - ISPD antisense RNA 1 ncRNA 27999 chr8 70557288 70557367 + 0 NA Intergenic Intergenic 50364 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 20741 chr3 179563541 179563664 + 0 NA intron (NM_178042, intron 1 of 13) CpG 722 NM_178042 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 3355 chr10 17273549 17273653 + 0 NA Intergenic Intergenic -43616 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 1976 chr1 164701305 164701409 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 73284 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 25431 chr6 159762284 159762464 + 0 NA promoter-TSS (NR_037166) promoter-TSS (NR_037166) -42 NR_037166 100129518 Hs.712708 NR_037166 ENSG00000112096 LOC100129518 - uncharacterized LOC100129518 ncRNA 22124 chr4 187184653 187184719 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 320927 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 817 chr1 46223624 46223736 + 0 NA Intergenic Intergenic -3375 NM_001243766 55624 Hs.525134 NM_017739 ENSG00000085998 POMGNT1 GNTI.2|GnT I.2|LGMD2O|MEB|MGAT1.2|RP76|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 26998 chr7 129969965 129970063 + 0 NA Intergenic Intergenic -17054 NM_003344 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 25553 chr7 2353963 2354067 + 0 NA promoter-TSS (NM_001037283) promoter-TSS (NM_001037283) -824 NM_001037283 8662 Hs.371001 NM_003751 ENSG00000106263 EIF3B EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 eukaryotic translation initiation factor 3 subunit B protein-coding 2751 chr1 221462487 221462591 + 0 NA Intergenic Intergenic -126243 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 10913 chr16 3031705 3031790 + 0 NA promoter-TSS (NR_047572) promoter-TSS (NR_047572) -734 NR_047572 100128770 Hs.666223 NR_047572 ENSG00000205890 LOC100128770 - uncharacterized LOC100128770 ncRNA 17889 chr20 33993407 33993511 + 0 NA promoter-TSS (NM_016732) promoter-TSS (NM_016732) -193 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 12790 chr17 59837802 59837924 + 0 NA intron (NM_001329398, intron 10 of 11) intron (NM_001329398, intron 10 of 11) -3403 NR_029493 406991 Hs.444569 NR_029493 ENSG00000062716 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 10756 chr15 94524718 94524822 + 0 NA Intergenic LTR8B|LTR|ERV1 168835 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 28058 chr8 78516279 78516384 + 0 NA 5' UTR (NM_006823, exon 1 of 4) 5' UTR (NM_006823, exon 1 of 4) 230 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 22911 chr5 95858865 95859025 + 0 NA non-coding (NR_026936, exon 3 of 3) non-coding (NR_026936, exon 3 of 3) 6713 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 28636 chr8 127401201 127401352 + 0 NA non-coding (NR_109834, exon 1 of 1) non-coding (NR_109834, exon 1 of 1) 877 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 (non-protein coding) ncRNA 29623 chr9 96377392 96377496 + 0 NA intron (NM_007001, intron 1 of 11) MER65C|LTR|ERV1 6266 NR_104627 11046 Hs.494556 NM_007001 ENSG00000130958 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 member D2 protein-coding 16602 chr2 165953785 165953926 + 0 NA promoter-TSS (NM_024753) promoter-TSS (NM_024753) -17 NM_024753 79809 Hs.310672 NM_024753 ENSG00000123607 TTC21B ATD4|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1 tetratricopeptide repeat domain 21B protein-coding 13656 chr18 59502177 59502281 + 0 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) -142953 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 8779 chr14 28661499 28661603 + 0 NA Intergenic L1MCc|LINE|L1 103768 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 31161 chrX 152830825 152830936 + 0 NA promoter-TSS (NM_004344) promoter-TSS (NM_004344) -87 NM_015922 50814 Hs.57698 NM_015922 ENSG00000147383 NSDHL H105E3|SDR31E1|XAP104 NAD(P) dependent steroid dehydrogenase-like protein-coding 24287 chr6 28896279 28896434 + 0 NA promoter-TSS (NR_104117).5 promoter-TSS (NR_104117).5 -174 NR_104117 414760 Hs.211005 NR_104117 ENSG00000224157 HCG14 dJ111M5.4 HLA complex group 14 (non-protein coding) ncRNA 29428 chr9 85742025 85742182 + 0 NA promoter-TSS (NM_001286715) promoter-TSS (NM_001286715) -74 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 25143 chr6 129490610 129490714 + 0 NA intron (NM_001079823, intron 55 of 63) intron (NM_001079823, intron 55 of 63) 219563 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 18848 chr22 36410125 36410228 + 0 NA Intergenic CpG -22109 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 21296 chr4 38318880 38319010 + 0 NA Intergenic Intergenic 198991 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 13685 chr18 61950170 61950274 + 0 NA Intergenic Intergenic -57151 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 28201 chr8 93904357 93904479 + 0 NA Intergenic Intergenic 11701 NR_039602 100616169 NR_039602 ENSG00000264448 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 30746 chrX 53714631 53714735 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -27954 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding 26189 chr7 45347877 45348033 + 0 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 190187 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 20879 chr3 187165277 187165381 + 0 NA Intergenic Intergenic -25854 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L RPL39L1 ribosomal protein L39 like protein-coding 1947 chr1 162141790 162141894 + 0 NA intron (NM_014697, intron 1 of 9) intron (NM_014697, intron 1 of 9) -15265 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 1347 chr1 94739782 94739886 + 0 NA intron (NR_104131, intron 1 of 4) intron (NR_104131, intron 1 of 4) 6066 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 3971 chr10 79265041 79265145 + 0 NA intron (NM_020338, intron 7 of 24) intron (NM_020338, intron 7 of 24) -82371 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 3350 chr10 17105421 17105525 + 0 NA exon (NM_001081, exon 11 of 67) exon (NM_001081, exon 11 of 67) 24344 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 1504 chr1 111140138 111140176 + 0 NA promoter-TSS (NM_178454) promoter-TSS (NM_178454) -6 NR_138484 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 25 chr1 1615763 1615785 + 0 NA promoter-TSS (NM_001170689) promoter-TSS (NM_001170689) -91 NM_001170689 142678 Hs.135805 NM_080875 ENSG00000197530 MIB2 ZZANK1|ZZZ5 mindbomb E3 ubiquitin protein ligase 2 protein-coding 8812 chr14 32342333 32342417 + 0 NA intron (NM_004274, intron 1 of 13) L2|LINE|L2 13102 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 22826 chr5 84288163 84288267 + 0 NA intron (NM_005711, intron 1 of 10) L2-1_AMi|LINE|L2 96652 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 21637 chr4 102345489 102345593 + 0 NA promoter-TSS (NM_001135147) promoter-TSS (NM_001135147) -43 NM_001135146 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 12807 chr17 61568692 61568796 + 0 NA Intergenic Intergenic 22458 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex alpha subunit 2 protein-coding 16088 chr2 108449086 108449214 + 0 NA promoter-TSS (NM_181453) promoter-TSS (NM_181453) 29 NM_181453 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 1253 chr1 87806072 87806176 + 0 NA Intergenic Intergenic -434469 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 7850 chr12 124829479 124829564 + 0 NA intron (NM_005505, intron 1 of 12) L2a|LINE|L2 34452 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 12099 chr17 10150249 10150353 + 0 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) 48250 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 MLL/GAS7 growth arrest specific 7 protein-coding 13689 chr18 62325256 62325385 + 0 NA promoter-TSS (NM_001278268) promoter-TSS (NM_001278268) 33 NM_001270949 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 22233 chr5 13568077 13568163 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 376360 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 24479 chr6 37018243 37018397 + 0 NA intron (NM_173558, intron 9 of 15) intron (NM_173558, intron 9 of 15) 12673 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 18502 chr21 34888614 34888752 + 0 NA promoter-TSS (NM_001122607) promoter-TSS (NM_001122607) 7 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 20908 chr3 189309665 189309769 + 0 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -69123 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 17054 chr2 213284275 213284451 + 0 NA promoter-TSS (NM_001025436) promoter-TSS (NM_001025436) -16 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 11856 chr16 89702052 89702156 + 0 NA promoter-TSS (NM_152339) promoter-TSS (NM_152339) -391 NM_152339 124044 Hs.374556 NM_152339 ENSG00000158792 SPATA2L C16orf76|tamo spermatogenesis associated 2 like protein-coding 15998 chr2 98608417 98608566 + 0 NA promoter-TSS (NM_001008215) promoter-TSS (NM_001008215) 27 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 16057 chr2 102664522 102664669 + 0 NA intron (NM_003048, intron 2 of 11) intron (NM_003048, intron 2 of 11) 45061 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 21282 chr4 36006301 36006405 + 0 NA Intergenic Intergenic -237763 NR_122079 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 19119 chr3 8619656 8619760 + 0 NA non-coding (NR_046358, exon 13 of 13) non-coding (NR_046358, exon 13 of 13) 25090 NR_046358 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 16159 chr2 112794295 112794475 + 0 NA Intergenic Intergenic -8987 NM_000575 3552 Hs.1722 NM_000575 ENSG00000115008 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1 alpha protein-coding 10445 chr15 74546299 74546439 + 0 NA intron (NM_006465, intron 2 of 8) intron (NM_006465, intron 2 of 8) 5192 NM_006465 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 6654 chr12 13390611 13390668 + 0 NA Intergenic Intergenic -13894 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 9877 chr15 36632344 36632448 + 0 NA intron (NM_001290232, intron 1 of 10) LTR48|LTR|ERV1 37527 NM_032499 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 29440 chr9 86348620 86348724 + 0 NA intron (NM_001330718, intron 2 of 27) AluJo|SINE|Alu 5778 NM_001330718 79670 Hs.597057 NM_024617 ENSG00000083223 ZCCHC6 PAPD6|TUT7 zinc finger CCHC-type containing 6 protein-coding 20848 chr3 185586088 185586212 + 0 NA promoter-TSS (NM_021627) promoter-TSS (NM_021627) -93 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO1/sentrin/SMT3 specific peptidase 2 protein-coding 8024 chr13 27634485 27634563 + 0 NA intron (NM_152705, intron 1 of 2) intron (NM_152705, intron 1 of 2) 12745 NM_015972 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I subunit D protein-coding 11546 chr16 68843510 68843662 + 0 NA promoter-TSS (NM_024562) promoter-TSS (NM_024562) -20 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 11760 chr16 83953089 83953193 + 0 NA promoter-TSS (NM_182981) promoter-TSS (NM_182981) -81 NM_182981 29948 Hs.128055 NM_013370 ENSG00000140961 OSGIN1 BDGI|OKL38 oxidative stress induced growth inhibitor 1 protein-coding 28015 chr8 72890172 72890241 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -118656 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 15154 chr2 20466143 20466279 + 0 NA Intergenic Intergenic 19140 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 21504 chr4 81466951 81467055 + 0 NA intron (NM_152545, intron 1 of 13) intron (NM_152545, intron 1 of 13) 4925 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 17737 chr20 20360557 20360640 + 0 NA 3' UTR (NM_015585, exon 27 of 27) 3' UTR (NM_015585, exon 27 of 27) -7523 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 21489 chr4 78939393 78939471 + 0 NA promoter-TSS (NM_001040202) promoter-TSS (NM_001040202) -4 NM_001040202 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 46 chr1 2586449 2586597 + 0 NA promoter-TSS (NR_036637) promoter-TSS (NR_036637) 63 NR_036638 127281 Hs.462033 NM_152371 ENSG00000157870 FAM213B C1orf93 family with sequence similarity 213 member B protein-coding 21244 chr4 22969464 22969589 + 0 NA Intergenic Intergenic 255437 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 17985 chr20 38472591 38472770 + 0 NA promoter-TSS (NM_001282917) promoter-TSS (NM_001282917) -126 NM_001282918 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 29000 chr9 26260460 26260564 + 0 NA Intergenic MIRb|SINE|MIR 193837 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 22025 chr4 174283161 174283295 + 0 NA promoter-TSS (NM_001145314) promoter-TSS (NM_001145314) -449 NM_001040157 80817 Hs.555989 NM_030633 ENSG00000164118 CEP44 KIAA1712|PS1TP3 centrosomal protein 44 protein-coding 29195 chr9 71768600 71768725 + 0 NA 5' UTR (NM_001135820, exon 1 of 23) 5' UTR (NM_001135820, exon 1 of 23) 222 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 2630 chr1 212414858 212414918 + 0 NA promoter-TSS (NM_001198862) promoter-TSS (NM_001198862) 13 NM_001198862 55248 Hs.445386 NM_018252 ENSG00000065600 TMEM206 C1orf75 transmembrane protein 206 protein-coding 23502 chr5 149939137 149939210 + 0 NA intron (NM_000440, intron 1 of 21) intron (NM_000440, intron 1 of 21) 5620 NM_000440 5145 Hs.567314 NM_000440 ENSG00000132915 PDE6A CGPR-A|PDEA|RP43 phosphodiesterase 6A protein-coding 12223 chr17 21551157 21551287 + 0 NA exon (NM_001113434, exon 1 of 2) exon (NM_001113434, exon 1 of 2) 456 NM_001113434 339263 Hs.514016 NM_001113434 ENSG00000212719 C17orf51 - chromosome 17 open reading frame 51 protein-coding 18079 chr20 45041725 45041829 + 0 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 59335 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 2373 chr1 201461275 201461411 + 0 NA Intergenic L2c|LINE|L2 7828 NR_073080 23612 Hs.153944 NM_012396 ENSG00000174307 PHLDA3 TIH1 pleckstrin homology like domain family A member 3 protein-coding 10023 chr15 45402216 45402323 + 0 NA promoter-TSS (NM_001321015) promoter-TSS (NM_001321015) 48 NM_001321015 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 6259 chr11 123974013 123974117 + 0 NA Intergenic Intergenic 3626 NM_001004474 219873 Hs.553637 NM_001004474 ENSG00000196248 OR10S1 OR11-279 olfactory receptor family 10 subfamily S member 1 protein-coding 23668 chr5 167814941 167815045 + 0 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 60057 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 25748 chr7 16935435 16935573 + 0 NA Intergenic Intergenic -53515 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 6878 chr12 40697940 40698163 + 0 NA intron (NM_001843, intron 1 of 23) intron (NM_001843, intron 1 of 23) 5609 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 1254 chr1 87927856 87927960 + 0 NA Intergenic Intergenic -556253 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 11447 chr16 58734308 58734457 + 0 NA promoter-TSS (NM_001286220) promoter-TSS (NM_001286220) -25 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 1642 chr1 145979519 145979663 + 0 NA TTS (NM_032305) TTS (NM_032305) 14909 NM_032305 84265 Hs.591456 NM_032305 ENSG00000121851 POLR3GL RPC32HOM|flj32422 RNA polymerase III subunit G like protein-coding 6839 chr12 32399410 32399514 + 0 NA Intergenic CpG -86510 NM_001330374 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 23145 chr5 126736305 126736409 + 0 NA Intergenic Intergenic 40129 NR_134485 102723557 Hs.582207 NR_134485 ENSG00000251072 LOC102723557 - uncharacterized LOC102723557 ncRNA 27428 chr8 13497587 13497688 + 0 NA intron (NM_024767, intron 2 of 4) intron (NM_024767, intron 2 of 4) 17283 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 11535 chr16 68658600 68658762 + 0 NA intron (NM_001793, intron 2 of 15) intron (NM_001793, intron 2 of 15) 13845 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 23197 chr5 132094686 132094790 + 0 NA Intergenic Intergenic 20946 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 GMCSF colony stimulating factor 2 protein-coding 21748 chr4 119627197 119627301 + 0 NA promoter-TSS (NM_033430) promoter-TSS (NM_033430) 38 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 11099 chr16 20741771 20741924 + 0 NA 5' UTR (NM_001304550, exon 1 of 5) 5' UTR (NM_001304550, exon 1 of 5) 117 NM_017736 55623 Hs.700004 NM_017736 ENSG00000066654 THUMPD1 Tan1 THUMP domain containing 1 protein-coding 26860 chr7 115634619 115634769 + 0 NA Intergenic Intergenic 333619 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 537 chr1 31956161 31956253 + 0 NA Intergenic Intergenic -17820 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 6636 chr12 12927687 12927791 + 0 NA Intergenic MER50|LTR|ERV1 11910 NR_030345 693199 NR_030345 ENSG00000013588 MIR614 MIRN614|hsa-mir-614 microRNA 614 ncRNA 7794 chr12 122098057 122098106 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) 19353 NM_014938 22877 Hs.437153 NM_014938 ENSG00000175727 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 10761 chr15 95026201 95026305 + 0 NA Intergenic Intergenic 170890 NR_077061 440311 Hs.745156 NR_077061 ENSG00000260521 LOC440311 - glioma tumor suppressor candidate region gene 2 pseudogene pseudo 9801 chr15 29534681 29534785 + 0 NA intron (NM_015307, intron 1 of 10) intron (NM_015307, intron 1 of 10) 35990 NM_015307 23359 Hs.383564 NM_015307 ENSG00000104059 FAM189A1 TMEM228 family with sequence similarity 189 member A1 protein-coding 13282 chr18 12741488 12741592 + 0 NA intron (NR_110763, intron 1 of 1) L1MB7|LINE|L1 7882 NR_110763 100996324 Hs.333275 NR_110763 ENSG00000267654 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 25174 chr6 134057651 134057755 + 0 NA Intergenic Intergenic -5052 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 28159 chr8 88942282 88942386 + 0 NA Intergenic L1M8|LINE|L1 -614846 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 22084 chr4 183987597 183987828 + 0 NA intron (NM_020225, intron 1 of 3) intron (NM_020225, intron 1 of 3) 82356 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 3119 chr1 244740129 244740233 + 0 NA Intergenic LTR8|LTR|ERV1 87133 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 12728 chr17 55743170 55743274 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -7757 NM_001330377 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 9070 chr14 55794851 55794955 + 0 NA intron (NR_026796, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR 1771 NR_026796 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 3566 chr10 34582461 34582467 + 0 NA intron (NM_001184791, intron 2 of 20) intron (NM_001184791, intron 2 of 20) 232861 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 26465 chr7 77425811 77425912 + 0 NA TTS (NR_110073) TTS (NR_110073) -9461 NM_017439 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 529 chr1 31576338 31576508 + 0 NA promoter-TSS (NM_001204414) promoter-TSS (NM_001204414) -62 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 24196 chr6 24720867 24720994 + 0 NA Intergenic CpG -1755 NM_030939 81688 Hs.744857 NM_030939 ENSG00000112308 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 3556 chr10 33335140 33335244 + 0 NA promoter-TSS (NM_001244973) promoter-TSS (NM_001244973) -287 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 22295 chr5 17343804 17343908 + 0 NA Intergenic Intergenic 43454 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 12830 chr17 63478985 63479161 + 0 NA exon (NM_000789, exon 3 of 25) exon (NM_000789, exon 3 of 25) 2012 NM_000789 1636 Hs.298469 NM_000789 ENSG00000159640 ACE ACE1|CD143|DCP|DCP1 angiotensin I converting enzyme protein-coding 14332 chr19 29942131 29942235 + 0 NA promoter-TSS (NM_003796) promoter-TSS (NM_003796) -56 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1, prefoldin like chaperone protein-coding 17722 chr20 19802775 19802908 + 0 NA Intergenic Intergenic -83680 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 4309 chr10 104580938 104581062 + 0 NA Intergenic Intergenic -60101 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 14847 chr19 57487727 57487784 + 0 NA promoter-TSS (NM_001098491) promoter-TSS (NM_001098491) 44 NM_001098492 79744 Hs.744339 NM_024691 ENSG00000105136 ZNF419 ZAPHIR|ZNF419A zinc finger protein 419 protein-coding 14639 chr19 48321379 48321397 + 0 NA Intergenic CpG -1313 NM_144577 93233 Hs.112645 NM_144577 ENSG00000105479 CCDC114 CILD20 coiled-coil domain containing 114 protein-coding 21097 chr4 499120 499246 + 0 NA promoter-TSS (NM_001289055) promoter-TSS (NM_001289055) -12 NM_133474 170960 Hs.428360 NM_133474 ENSG00000182903 ZNF721 - zinc finger protein 721 protein-coding 20937 chr3 190265891 190265995 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB 56503 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 987 chr1 61496586 61496741 + 0 NA Intergenic Intergenic -157579 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 19439 chr3 45146375 45146493 + 0 NA promoter-TSS (NM_022842) promoter-TSS (NM_022842) -12 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 25870 chr7 24075009 24075190 + 0 NA Intergenic Intergenic -209089 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 31003 chrX 119399185 119399289 + 0 NA promoter-TSS (NM_145305) promoter-TSS (NM_145305) -58 NM_145305 203427 Hs.496658 NM_145305 ENSG00000077713 SLC25A43 - solute carrier family 25 member 43 protein-coding 1150 chr1 78070917 78071043 + 0 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 25075 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 5635 chr11 73142360 73142506 + 0 NA promoter-TSS (NM_014824) promoter-TSS (NM_014824) -335 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|SH3MD3 FCH and double SH3 domains 2 protein-coding 13162 chr17 82282044 82282148 + 0 NA Intergenic Intergenic -8354 NR_110578 1453 Hs.631725 NM_001893 ENSG00000141551 CSNK1D ASPS|CKIdelta|FASPS2|HCKID casein kinase 1 delta protein-coding 4122 chr10 95430486 95430631 + 0 NA intron (NM_001034954, intron 4 of 30) intron (NM_001034954, intron 4 of 30) 10622 NM_001034955 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 12168 chr17 17729003 17729107 + 0 NA intron (NM_030665, intron 2 of 5) intron (NM_030665, intron 2 of 5) 37247 NR_130894 100861516 Hs.624874 NR_130894 ENSG00000237328 RAI1-AS1 - RAI1 antisense RNA 1 ncRNA 24026 chr6 10694554 10694708 + 0 NA promoter-TSS (NM_001145020) promoter-TSS (NM_001145020) -25 NM_001145020 347744 Hs.61389 NM_001145020 ENSG00000137434 C6orf52 - chromosome 6 open reading frame 52 protein-coding 4314 chr10 105188888 105188992 + 0 NA intron (NM_014978, intron 14 of 26) intron (NM_014978, intron 14 of 26) -522724 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 8164 chr13 41137334 41137438 + 0 NA intron (NR_120423, intron 1 of 3) MER92C|LTR|ERV1 4458 NR_120423 101929140 Hs.663088 NR_120423 ENSG00000278390 LOC101929140 - uncharacterized LOC101929140 ncRNA 26211 chr7 46784856 46784929 + 0 NA Intergenic Intergenic -87770 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 10224 chr15 60414222 60414326 + 0 NA Intergenic Intergenic -16288 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 24882 chr6 85593899 85594018 + 0 NA 5' UTR (NM_001297614, exon 1 of 28) 5' UTR (NM_001297614, exon 1 of 28) 198 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 21396 chr4 56436287 56436391 + 0 NA promoter-TSS (NM_002703) promoter-TSS (NM_002703) 236 NM_001079525 10606 Hs.518774 NM_006452 ENSG00000128050 PAICS ADE2|ADE2H1|AIRC|PAIS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase protein-coding 23530 chr5 150904950 150904972 + 0 NA promoter-TSS (NM_001172831) promoter-TSS (NM_001172831) 22 NM_001172832 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 20485 chr3 156784307 156784454 + 0 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 27641 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 2390 chr1 202008275 202008400 + 0 NA Intergenic Intergenic -2225 NM_004433 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 20452 chr3 154152039 154152143 + 0 NA intron (NM_015595, intron 5 of 14) intron (NM_015595, intron 5 of 14) 30731 NM_015595 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 10795 chr15 99435296 99435448 + 0 NA Intergenic Intergenic -130556 NM_001130927 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 30619 chrX 39753438 39753542 + 0 NA Intergenic L2a|LINE|L2 -84071 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 7292 chr12 76878993 76879146 + 0 NA promoter-TSS (NM_001321) promoter-TSS (NM_001321) -29 NM_001300965 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 22343 chr5 32714012 32714166 + 0 NA intron (NM_001204375, intron 1 of 7) CpG 2757 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 16645 chr2 171272156 171272260 + 0 NA Intergenic Intergenic -40894 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 4900 chr11 15106700 15106804 + 0 NA Intergenic Intergenic -5672 NM_001031853 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - inscuteable homolog (Drosophila) protein-coding 30673 chrX 47582297 47582401 + 0 NA promoter-TSS (NM_003254) promoter-TSS (NM_003254) 58 NM_003254 7076 Hs.522632 NM_003254 ENSG00000102265 TIMP1 CLGI|EPA|EPO|HCI|TIMP|TIMP-1 TIMP metallopeptidase inhibitor 1 protein-coding 22599 chr5 60699951 60700055 + 0 NA intron (NM_018369, intron 1 of 10) CpG 163 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 1340 chr1 94621510 94621639 + 0 NA Intergenic Intergenic -79717 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 247 chr1 17054029 17054176 + 0 NA promoter-TSS (NM_003000) promoter-TSS (NM_003000) 68 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 8469 chr13 97273395 97273520 + 0 NA intron (NM_207304, intron 1 of 6) intron (NM_207304, intron 1 of 6) 51161 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 22296 chr5 17375566 17375719 + 0 NA Intergenic Intergenic 11668 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 21094 chr4 124329 124483 + 0 NA promoter-TSS (NM_001039127) promoter-TSS (NM_001039127) -70 NR_110528 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 4389 chr10 114151627 114151731 + 0 NA intron (NM_001321829, intron 4 of 16) MER44C|DNA|TcMar-Tigger 22500 NR_031747 100302224 NR_031747 ENSG00000165813 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 18941 chr22 40732884 40732988 + 0 NA Intergenic Intergenic 53758 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 26561 chr7 90154414 90154558 + 0 NA 5' UTR (NM_012449, exon 1 of 5) 5' UTR (NM_012449, exon 1 of 5) 111 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 19378 chr3 39141228 39141383 + 0 NA TTS (NM_033027) TTS (NM_033027) 3099 NR_106880 102466743 NR_106880 ENSG00000168026 MIR6822 hsa-mir-6822 microRNA 6822 ncRNA 4739 chr11 6251215 6251319 + 0 NA Intergenic Intergenic -8407 NM_001318029 887 Hs.203 NM_176875 ENSG00000110148 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 16218 chr2 119702990 119703094 + 0 NA Intergenic Intergenic 23875 NM_001105199 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 21615 chr4 99563687 99563813 + 0 NA promoter-TSS (NM_000253) promoter-TSS (NM_000253) -82 NM_152292 93587 Hs.380412 NM_152292 ENSG00000145331 TRMT10A HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10 tRNA methyltransferase 10A protein-coding 2119 chr1 177315452 177315556 + 0 NA Intergenic HAL1|LINE|L1 -36082 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 13313 chr18 22933284 22933388 + 0 NA promoter-TSS (NM_002894) promoter-TSS (NM_002894) 4 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 7592 chr12 106956742 106956818 + 0 NA promoter-TSS (NM_001319662) promoter-TSS (NM_001319662) -5 NM_001319662 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 9471 chr14 81324159 81324317 + 0 NA intron (NM_001256430, intron 5 of 7) intron (NM_001256430, intron 5 of 7) 102974 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 13433 chr18 35240956 35241097 + 0 NA promoter-TSS (NM_001135178) promoter-TSS (NM_001135178) -4 NM_032347 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 18379 chr20 62182909 62183055 + 0 NA promoter-TSS (NM_015666) promoter-TSS (NM_015666) -43 NM_015666 26164 Hs.340636 NM_015666 ENSG00000101181 MTG2 GTPBP5|ObgH1|dJ1005F21.2 mitochondrial ribosome associated GTPase 2 protein-coding 1249 chr1 87712408 87712512 + 0 NA Intergenic L2c|LINE|L2 -340805 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 147 chr1 10032702 10032845 + 0 NA promoter-TSS (NM_006048) promoter-TSS (NM_006048) -210 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 15941 chr2 88600142 88600310 + 0 NA intron (NM_004836, intron 2 of 16) intron (NM_004836, intron 2 of 16) 24703 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 17448 chr20 1719112 1719216 + 0 NA Intergenic LTR8|LTR|ERV1 60582 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 5211 chr11 44727860 44727964 + 0 NA Intergenic CpG -36514 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 6846 chr12 32755860 32756023 + 0 NA promoter-TSS (NM_001040436) promoter-TSS (NM_001040436) 12 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 27980 chr8 67343835 67344006 + 0 NA promoter-TSS (NM_006421) promoter-TSS (NM_006421) 86 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 18619 chr22 18024431 18024535 + 0 NA promoter-TSS (NM_015241) promoter-TSS (NM_015241) 76 NM_015241 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 27170 chr7 143902220 143902324 + 0 NA promoter-TSS (NM_014719) promoter-TSS (NM_014719) -87 NM_001206938 9747 Hs.735149 NM_014719 ENSG00000198420 TCAF1 FAM115A TRPM8 channel associated factor 1 protein-coding 22662 chr5 67161096 67161225 + 0 NA intron (NM_001164664, intron 27 of 28) intron (NM_001164664, intron 27 of 28) 35629 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 2601 chr1 211259271 211259375 + 0 NA promoter-TSS (NM_001136225) promoter-TSS (NM_001136225) -43 NM_001136224 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 2599 chr1 211037165 211037269 + 0 NA intron (NM_172362, intron 5 of 10) MIRc|SINE|MIR 96898 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 5584 chr11 68839380 68839484 + 0 NA intron (NM_001031847, intron 1 of 18) CpG 2499 NM_001876 1374 Hs.503043 NM_001876 ENSG00000110090 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A protein-coding 14045 chr19 9039793 9039937 + 0 NA Intergenic Intergenic -53380 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor family 1 subfamily M member 1 protein-coding 19995 chr3 120112080 120112204 + 0 NA Intergenic Intergenic -17725 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 25992 chr7 32336903 32337007 + 0 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) -37551 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1052 chr1 65812079 65812183 + 0 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) 18958 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 5346 chr11 61603291 61603484 + 0 NA intron (NR_110189, intron 3 of 3) intron (NR_110189, intron 3 of 3) -11649 NR_002775 113157 Hs.502733 NR_002775 ENSG00000243742 RPLP0P2 RPLP0L2|RPLP0_3_1146 ribosomal protein lateral stalk subunit P0 pseudogene 2 pseudo 23361 chr5 140718893 140719039 + 0 NA promoter-TSS (NR_026704) promoter-TSS (NR_026704) 40 NR_026704 56663 NR_026704 ENSG00000202111 VTRNA1-2 HVG2|VAULTRC2|VR2|hvg-2 vault RNA 1-2 ncRNA 26680 chr7 99438787 99438905 + 0 NA promoter-TSS (NM_001318162) promoter-TSS (NM_001318162) -7 NM_015545 26024 Hs.632313 NM_015545 ENSG00000106246 PTCD1 - pentatricopeptide repeat domain 1 protein-coding 10780 chr15 97904259 97904350 + 0 NA Intergenic Intergenic -29875 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 10906 chr16 2883176 2883276 + 0 NA promoter-TSS (NM_001142499) promoter-TSS (NM_001142499) 31 NM_001142500 114984 Hs.534525 NM_138439 ENSG00000162076 FLYWCH2 - FLYWCH family member 2 protein-coding 28878 chr9 2242007 2242153 + 0 NA Intergenic CpG 83624 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 13517 chr18 47176218 47176366 + 0 NA promoter-TSS (NM_016097) promoter-TSS (NM_016097) 82 NM_016097 51124 Hs.130917 NM_016097 ENSG00000134049 IER3IP1 HSPC039|MEDS|PRO2309 immediate early response 3 interacting protein 1 protein-coding 5661 chr11 74371723 74371893 + 0 NA exon (NM_173582, exon 3 of 14) exon (NM_173582, exon 3 of 14) 26657 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 974 chr1 60972911 60973015 + 0 NA Intergenic MIRc|SINE|MIR -2187 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 8016 chr13 27270760 27270805 + 0 NA promoter-TSS (NM_001331126) promoter-TSS (NM_001331126) -395 NM_001331126 387496 Hs.192131 NM_206827 ENSG00000122035 RASL11A - RAS like family 11 member A protein-coding 20543 chr3 159854933 159855037 + 0 NA intron (NM_001197109, intron 1 of 6) intron (NM_001197109, intron 1 of 6) 15124 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 19393 chr3 40524773 40524936 + 0 NA promoter-TSS (NM_001098414) promoter-TSS (NM_001098414) -24 NM_001287245 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 27992 chr8 69994730 69994834 + 0 NA Intergenic Intergenic 76545 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 13412 chr18 32470804 32470992 + 0 NA promoter-TSS (NM_001242409) promoter-TSS (NM_001242409) -414 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 22492 chr5 50655959 50656035 + 0 NA Intergenic Intergenic -9902 NM_001178055 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 18143 chr20 47990005 47990130 + 0 NA promoter-TSS (NR_110027) promoter-TSS (NR_110027) 50 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 25714 chr7 14021168 14021272 + 0 NA Intergenic L2|LINE|L2 -29795 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 12562 chr17 44345126 44345253 + 0 NA 5' UTR (NM_002087, exon 1 of 13) 5' UTR (NM_002087, exon 1 of 13) 103 NM_002087 2896 Hs.514220 NM_002087 ENSG00000030582 GRN CLN11|GEP|GP88|PCDGF|PEPI|PGRN granulin precursor protein-coding 20430 chr3 152964067 152964098 + 0 NA Intergenic MER21C|LTR|ERVL 129389 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1 purinergic receptor P2Y1 protein-coding 636 chr1 36397943 36398041 + 0 NA promoter-TSS (NM_032881) promoter-TSS (NM_032881) -33 NM_032881 84967 Hs.603131 NM_032881 ENSG00000181817 LSM10 MST074|MSTP074 LSM10, U7 small nuclear RNA associated protein-coding 6278 chr11 125070845 125070949 + 0 NA intron (NM_198277, intron 1 of 18) intron (NM_198277, intron 1 of 18) 7780 NM_198277 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 27397 chr8 11846720 11846824 + 0 NA intron (NM_147780, intron 10 of 11) intron (NM_147780, intron 10 of 11) 21378 NM_147783 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 24809 chr6 77293426 77293530 + 0 NA Intergenic Intergenic 170544 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 11247 chr16 30894149 30894180 + 0 NA TTS (NR_031576) TTS (NR_031576) 138 NM_001286526 9274 Hs.658547 NM_004765 ENSG00000099385 BCL7C - BCL tumor suppressor 7C protein-coding 14874 chr19 58408520 58408624 + 0 NA promoter-TSS (NM_001318002) promoter-TSS (NM_001318002) -102 NM_173548 201514 Hs.439551 NM_173548 ENSG00000171574 ZNF584 - zinc finger protein 584 protein-coding 27202 chr7 149145122 149145308 + 0 NA intron (NM_020781, intron 2 of 6) intron (NM_020781, intron 2 of 6) -2253 NM_170686 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 23916 chr6 3826146 3826226 + 0 NA Intergenic Intergenic -23180 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 21599 chr4 96649676 96649780 + 0 NA Intergenic Intergenic -717198 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 13013 chr17 75685031 75685185 + 0 NA intron (NM_013260, intron 3 of 10) intron (NM_013260, intron 3 of 10) -17919 NM_001003716 9400 Hs.632229 NM_004259 ENSG00000108469 RECQL5 RECQ5 RecQ like helicase 5 protein-coding 117 chr1 8525961 8526084 + 0 NA intron (NM_012102, intron 8 of 23) intron (NM_012102, intron 8 of 23) -31109 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 28780 chr8 141265360 141265429 + 0 NA Intergenic Intergenic -10765 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 29802 chr9 108543302 108543446 + 0 NA Intergenic Intergenic 312621 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 16254 chr2 122028493 122028597 + 0 NA Intergenic Intergenic 273000 NR_048557 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 20863 chr3 186259699 186259803 + 0 NA intron (NM_001080744, intron 15 of 23) intron (NM_001080744, intron 15 of 23) 102483 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 7215 chr12 63918050 63918142 + 0 NA intron (NM_020762, intron 1 of 21) MamGypsy2-I|LTR|Gypsy 73343 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 30339 chr9 134449737 134449841 + 0 NA Intergenic Intergenic 43207 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 29944 chr9 114981175 114981265 + 0 NA Intergenic LTR85a|LTR|Gypsy? -50625 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 28322 chr8 101027472 101027573 + 0 NA Intergenic Intergenic -24532 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 19295 chr3 29718685 29718789 + 0 NA intron (NM_001003793, intron 4 of 14) intron (NM_001003793, intron 4 of 14) 215419 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 8290 chr13 51815178 51815277 + 0 NA non-coding (NR_027047, exon 5 of 5) non-coding (NR_027047, exon 5 of 5) -11065 NM_001270424 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 27689 chr8 37780007 37780152 + 0 NA TTS (NM_007198) TTS (NM_007198) -16804 NM_032777 25960 Hs.274136 NM_032777 ENSG00000020181 ADGRA2 GPR124|TEM5 adhesion G protein-coupled receptor A2 protein-coding 8658 chr13 114314316 114314474 + 0 NA promoter-TSS (NM_001164144) promoter-TSS (NM_001164144) 60 NM_001164144 283489 Hs.7542 NM_032436 ENSG00000198824 CHAMP1 C13orf8|CAMP|CHAMP|MRD40|ZNF828 chromosome alignment maintaining phosphoprotein 1 protein-coding 16760 chr2 181120669 181120773 + 0 NA Intergenic Intergenic -3116 NR_130784 101927156 Hs.580074 NR_130784 ENSG00000234663 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 4586 chr10 126204450 126204514 + 0 NA intron (NM_001288973, intron 3 of 22) MLT1L|LTR|ERVL-MaLR 184076 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 13374 chr18 29154901 29154954 + 0 NA Intergenic L3|LINE|CR1 -977481 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 13396 chr18 31487783 31487887 + 0 NA Intergenic Intergenic -10169 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 19142 chr3 9843954 9844079 + 0 NA promoter-TSS (NM_001142547) promoter-TSS (NM_001142547) 2 NM_173659 285367 Hs.33719 NM_173659 ENSG00000156990 RPUSD3 - RNA pseudouridylate synthase domain containing 3 protein-coding 7572 chr12 105108132 105108282 + 0 NA promoter-TSS (NR_121211) promoter-TSS (NR_121211) 493 NM_001293640 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 19179 chr3 13161569 13161673 + 0 NA Intergenic Intergenic -88504 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 2179 chr1 181768293 181768452 + 0 NA intron (NM_001205294, intron 34 of 45) intron (NM_001205294, intron 34 of 45) 284822 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 2172 chr1 181142566 181142703 + 0 NA Intergenic Intergenic -31850 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 16127 chr2 111120773 111120965 + 0 NA promoter-TSS (NM_207002) promoter-TSS (NM_207002) -45 NM_138622 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 19411 chr3 42490385 42490490 + 0 NA intron (NM_001251882, intron 1 of 13) intron (NM_001251882, intron 1 of 13) 1138 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 20825 chr3 184600972 184601156 + 0 NA Intergenic Intergenic 39265 NM_004443 2049 Hs.2913 NM_004443 ENSG00000182580 EPHB3 EK2|ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 15637 chr2 62306962 62307108 + 0 NA Intergenic Intergenic 91514 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 19364 chr3 38496260 38496283 + 0 NA promoter-TSS (NR_134938) promoter-TSS (NR_134938) -1 NM_001318959 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 15688 chr2 65577052 65577189 + 0 NA Intergenic L2b|LINE|L2 -144598 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 15478 chr2 45946083 45946190 + 0 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 294232 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 25024 chr6 111873491 111873591 + 0 NA promoter-TSS (NM_002037) promoter-TSS (NM_002037) -89 NM_002037 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 17909 chr20 34825656 34825667 + 0 NA promoter-TSS (NM_014071) promoter-TSS (NM_014071) -12 NM_014071 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 7577 chr12 105445797 105445817 + 0 NA Intergenic Intergenic 115171 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 12819 chr17 62725990 62726032 + 0 NA intron (NM_001288780, intron 7 of 10) intron (NM_001288780, intron 7 of 10) 80642 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 29027 chr9 32552218 32552322 + 0 NA promoter-TSS (NR_102376) promoter-TSS (NR_102376) 36 NR_102377 100129250 Hs.664395 NR_033991 ENSG00000235453 TOPORS-AS1 C9orf133 TOPORS antisense RNA 1 ncRNA 30275 chr9 131501158 131501262 + 0 NA Intergenic MIR3|SINE|MIR -1692 NM_007171 10585 Hs.522449 NM_007171 ENSG00000130714 POMT1 LGMD2K|MDDGA1|MDDGB1|MDDGC1|RT protein O-mannosyltransferase 1 protein-coding 10205 chr15 59553975 59554079 + 0 NA Intergenic Intergenic -57756 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 30345 chr9 135927034 135927170 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR -19943 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 22360 chr5 34839310 34839336 + 0 NA promoter-TSS (NM_001317949) promoter-TSS (NM_001317949) 159 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 26652 chr7 98049201 98049305 + 0 NA Intergenic Intergenic -57632 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 13909 chr19 2819757 2819841 + 0 NA promoter-TSS (NM_001102651) promoter-TSS (NM_001102651) -75 NM_001102651 115196 Hs.307043 NM_152303 ENSG00000172006 ZNF554 - zinc finger protein 554 protein-coding 29856 chr9 110752968 110753072 + 0 NA intron (NM_001166280, intron 8 of 12) intron (NM_001166280, intron 8 of 12) 84249 NM_001166280 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS muscle associated receptor tyrosine kinase protein-coding 16811 chr2 189683585 189683666 + 0 NA intron (NM_144708, intron 2 of 22) intron (NM_144708, intron 2 of 22) 7640 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 2178 chr1 181647795 181647925 + 0 NA intron (NM_001205294, intron 6 of 45) intron (NM_001205294, intron 6 of 45) 164310 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 25180 chr6 134644899 134645050 + 0 NA Intergenic Intergenic -104969 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 18584 chr21 44339278 44339436 + 0 NA promoter-TSS (NM_001271440) promoter-TSS (NM_001271440) 45 NM_001271440 755 Hs.517331 NM_004928 ENSG00000160226 C21orf2 LRRC76|YF5/A2 chromosome 21 open reading frame 2 protein-coding 8050 chr13 30306766 30306870 + 0 NA intron (NM_032116, intron 1 of 10) CpG 236 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 290 chr1 19882291 19882384 + 0 NA promoter-TSS (NM_015207) promoter-TSS (NM_015207) -58 NM_015207 23252 Hs.374987 NM_015207 ENSG00000169914 OTUD3 DUBA4 OTU deubiquitinase 3 protein-coding 14426 chr19 38684485 38684589 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 36921 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 10312 chr15 66504766 66504867 + 0 NA promoter-TSS (NM_001287821) promoter-TSS (NM_001287821) 39 NM_000968 6124 Hs.186350 NM_000968 ENSG00000174444 RPL4 L4 ribosomal protein L4 protein-coding 16424 chr2 145693236 145693391 + 0 NA Intergenic Intergenic -893744 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 19151 chr3 10248293 10248426 + 0 NA promoter-TSS (NM_014760) promoter-TSS (NM_014760) -134 NM_014760 9797 Hs.475401 NM_014760 ENSG00000157014 TATDN2 - TatD DNase domain containing 2 protein-coding 23638 chr5 160065348 160065489 + 0 NA 3' UTR (NM_001282500, exon 8 of 8) 3' UTR (NM_001282500, exon 8 of 8) 54027 NM_001130864 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 6339 chr11 129440214 129440318 + 0 NA intron (NM_003658, intron 2 of 3) intron (NM_003658, intron 2 of 3) 64280 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 23877 chr6 1917757 1917903 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 258161 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 9861 chr15 34969743 34969897 + 0 NA promoter-TSS (NM_014691) promoter-TSS (NM_014691) -26 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 15866 chr2 78673187 78673291 + 0 NA Intergenic MER61-int|LTR|ERV1 127708 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 15991 chr2 97967040 97967144 + 0 NA intron (NM_015348, intron 1 of 40) intron (NM_015348, intron 1 of 40) 28799 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 25463 chr6 164370862 164370961 + 0 NA Intergenic LTR16A1|LTR|ERVL 451152 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 22983 chr5 107542590 107542742 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 128229 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 16397 chr2 142321866 142321970 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR -190217 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 11370 chr16 54027284 54027379 + 0 NA intron (NM_001080432, intron 8 of 8) intron (NM_001080432, intron 8 of 8) -12062 NR_103838 100505692 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 19217 chr3 16071353 16071435 + 0 NA Intergenic LTR16C|LTR|ERVL -102928 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 4529 chr10 122112675 122112779 + 0 NA promoter-TSS (NM_001291879) promoter-TSS (NM_001291879) -312 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 7948 chr13 21140461 21140517 + 0 NA promoter-TSS (NM_005870) promoter-TSS (NM_005870) -25 NM_005870 10284 Hs.524899 NM_005870 ENSG00000150459 SAP18 2HOR0202|SAP18P Sin3A associated protein 18 protein-coding 25646 chr7 7157313 7157417 + 0 NA Intergenic Intergenic -25250 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 17078 chr2 216057959 216058067 + 0 NA intron (NM_018441, intron 4 of 7) MLT1K|LTR|ERVL-MaLR 23803 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 6040 chr11 109946365 109946486 + 0 NA Intergenic Intergenic -146936 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 8131 chr13 38814528 38814632 + 0 NA intron (NM_207361, intron 6 of 23) L1M1|LINE|L1 127544 NM_207361 341640 Hs.253994 NM_207361 ENSG00000150893 FREM2 - FRAS1 related extracellular matrix protein 2 protein-coding 6070 chr11 111531782 111531886 + 0 NA intron (NM_207430, intron 4 of 6) intron (NM_207430, intron 4 of 6) -8446 NM_001318799 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 8943 chr14 45785361 45785528 + 0 NA Intergenic MER61E|LTR|ERV1 -278715 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 24552 chr6 42140111 42140151 + 0 NA intron (NM_001164446, intron 1 of 4) intron (NM_001164446, intron 1 of 4) 2846 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 25197 chr6 136792581 136792685 + 0 NA promoter-TSS (NM_005923) promoter-TSS (NM_005923) -115 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 23142 chr5 126539183 126539315 + 0 NA Intergenic Intergenic 56141 NM_001182 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 6305 chr11 126403096 126403264 + 0 NA promoter-TSS (NM_001254758) promoter-TSS (NM_001254758) -236 NM_001254758 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 2038 chr1 168710068 168710083 + 0 NA intron (NM_001937, intron 2 of 3) L2c|LINE|L2 19129 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 24391 chr6 32153454 32153612 + 0 NA promoter-TSS (NR_037861) promoter-TSS (NR_037861) 81 NM_138717 9374 Hs.332138 NM_005155 ENSG00000221988 PPT2 C6orf8|G14|PPT-2 palmitoyl-protein thioesterase 2 protein-coding 12217 chr17 21214222 21214302 + 0 NA non-coding (NR_024547, exon 1 of 3) non-coding (NR_024547, exon 1 of 3) 333 NR_024547 8834 Hs.592945 NM_003876 ENSG00000178307 TMEM11 C17orf35|PM1|PMI transmembrane protein 11 protein-coding 17006 chr2 208192767 208192871 + 0 NA Intergenic Intergenic -2770 NM_001099334 389073 Hs.198416 NM_001099334 ENSG00000188674 C2orf80 GONDA1 chromosome 2 open reading frame 80 protein-coding 18044 chr20 43507653 43507734 + 0 NA promoter-TSS (NM_032107) promoter-TSS (NM_032107) 13 NM_032107 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 l(3)mbt-like 1 (Drosophila) protein-coding 19753 chr3 99876088 99876168 + 0 NA promoter-TSS (NM_001282793) promoter-TSS (NM_001282793) 75 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 6238 chr11 122581121 122581225 + 0 NA Intergenic Intergenic -74517 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 25131 chr6 127582898 127583002 + 0 NA intron (NM_001010905, intron 4 of 5) intron (NM_001010905, intron 4 of 5) 5776 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 13680 chr18 61606899 61607060 + 0 NA Intergenic Intergenic -141197 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 28065 chr8 79767917 79768099 + 0 NA promoter-TSS (NR_125410) promoter-TSS (NR_125410) -134 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 18140 chr20 47844331 47844469 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -57784 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 21133 chr4 3955517 3955668 + 0 NA promoter-TSS (NR_130740) promoter-TSS (NR_130740) -164 NR_130740 348926 Hs.591720 NR_024253 ENSG00000251669 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 12059 chr17 7888392 7888496 + 0 NA promoter-TSS (NM_001005273) promoter-TSS (NM_001005273) -407 NM_005852 1107 Hs.25601 NM_005852 ENSG00000170004 CHD3 Mi-2a|Mi2-ALPHA|ZFH chromodomain helicase DNA binding protein 3 protein-coding 12210 chr17 20935947 20935960 + 0 NA Intergenic Intergenic -2567 NR_123730 339260 Hs.661076 NR_123730 ENSG00000233098 LOC339260 - uncharacterized LOC339260 ncRNA 29145 chr9 69760030 69760134 + 0 NA promoter-TSS (NM_001099666) promoter-TSS (NM_001099666) -122 NM_001099666 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 25857 chr7 23347768 23347872 + 0 NA intron (NM_006547, intron 6 of 14) intron (NM_006547, intron 6 of 14) 48499 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 4644 chr10 133226980 133227111 + 0 NA TTS (NM_152643) TTS (NM_152643) -3229 NM_003577 8433 Hs.458406 NM_003577 ENSG00000171794 UTF1 - undifferentiated embryonic cell transcription factor 1 protein-coding 18332 chr20 58624012 58624138 + 0 NA Intergenic Intergenic -10697 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 6354 chr11 130023320 130023424 + 0 NA Intergenic Intergenic -20537 NM_020228 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7 PR/SET domain 10 protein-coding 6973 chr12 49367221 49367301 + 0 NA non-coding (NR_120663, exon 1 of 15) non-coding (NR_120663, exon 1 of 15) 356 NM_001293285 65244 Hs.654826 NM_023071 ENSG00000123352 SPATS2 Nbla00526|P59SCR|SCR59|SPATA10 spermatogenesis associated serine rich 2 protein-coding 17772 chr20 23095140 23095244 + 0 NA Intergenic Intergenic -8852 NM_012072 22918 Hs.97199 NM_012072 ENSG00000125810 CD93 C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1 CD93 molecule protein-coding 24745 chr6 57046500 57046640 + 0 NA promoter-TSS (NM_001286274) promoter-TSS (NM_001286274) 38 NM_001286274 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 27633 chr8 29555515 29555619 + 0 NA Intergenic Intergenic 192542 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 28374 chr8 104184079 104184183 + 0 NA intron (NM_014677, intron 17 of 21) intron (NM_014677, intron 17 of 21) -39204 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 28307 chr8 100678829 100678969 + 0 NA Intergenic Intergenic 24125 NR_106992 102466854 NR_106992 ENSG00000070756 MIR7705 hsa-mir-7705 microRNA 7705 ncRNA 2871 chr1 227735253 227735357 + 0 NA promoter-TSS (NM_001323934) promoter-TSS (NM_001323934) 106 NM_023007 65094 Hs.555974 NM_023007 ENSG00000081692 JMJD4 - jumonji domain containing 4 protein-coding 12950 chr17 72580656 72580760 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 12096 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 28384 chr8 104835942 104836046 + 0 NA Intergenic L2a|LINE|L2 -246970 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 ST7 LDL receptor related protein 12 protein-coding 30531 chrX 16946584 16946688 + 0 NA promoter-TSS (NM_004726) promoter-TSS (NM_004726) -55 NM_004726 9185 Hs.186810 NM_004726 ENSG00000169891 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 3953 chr10 77943161 77943296 + 0 NA Intergenic Intergenic 16416 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 24543 chr6 41941873 41941971 + 0 NA promoter-TSS (NM_001287427) promoter-TSS (NM_001287427) -74 NM_001136125 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 11422 chr16 57367532 57367647 + 0 NA Intergenic L1MC5a|LINE|L1 -4872 NM_001304392 6376 Hs.531668 NM_002996 ENSG00000006210 CX3CL1 ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin C-X3-C motif chemokine ligand 1 protein-coding 13828 chr18 80180257 80180400 + 0 NA intron (NM_032510, intron 2 of 2) intron (NM_032510, intron 2 of 2) 32404 NR_028340 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 1514 chr1 111739350 111739552 + 0 NA promoter-TSS (NM_019099) promoter-TSS (NM_019099) -27 NM_019099 55924 Hs.193406 NM_019099 ENSG00000197852 FAM212B C1orf183 family with sequence similarity 212 member B protein-coding 7599 chr12 107214390 107214494 + 0 NA Intergenic HERV9-int|LTR|ERV1 -103978 NM_001018072 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 15684 chr2 65432660 65432663 + 0 NA promoter-TSS (NM_181784) promoter-TSS (NM_181784) -139 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 4906 chr11 15650202 15650352 + 0 NA intron (NM_001293172, intron 1 of 2) CpG 6392 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 1647 chr1 146387542 146387646 + 0 NA Intergenic Intergenic 10787 NR_004427 26870 NR_004427 ENSG00000207005 RNU1-2 RNU1C1|RNU1C2|U1C1|U1C21 RNA, U1 small nuclear 2 snRNA 24743 chr6 56955277 56955323 + 0 NA promoter-TSS (NM_001144769) promoter-TSS (NM_001144769) 325 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 9844 chr15 33278973 33279077 + 0 NA Intergenic LTR81|LTR|Gypsy 31220 NR_120326 101928134 Hs.133851 NR_120326 ENSG00000259446 LOC101928134 - uncharacterized LOC101928134 ncRNA 28664 chr8 129627225 129627329 + 0 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -52259 NR_130918 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 15797 chr2 72859863 72859999 + 0 NA Intergenic Intergenic -27452 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) protein-coding 27381 chr8 10711272 10711440 + 0 NA Intergenic Intergenic 19218 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box 7 protein-coding 6603 chr12 11634248 11634352 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -15554 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 8834 chr14 34081911 34082058 + 0 NA Intergenic Intergenic -130906 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 28714 chr8 133000242 133000348 + 0 NA intron (NM_003235, intron 35 of 47) Charlie17a|DNA|hAT-Charlie 46286 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 4867 chr11 13261675 13261801 + 0 NA Intergenic Intergenic -15989 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 7013 chr12 52025892 52026016 + 0 NA intron (NM_001202233, intron 1 of 7) intron (NM_001202233, intron 1 of 7) 3122 NM_001202233 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 15748 chr2 69742005 69742120 + 0 NA promoter-TSS (NM_001153) promoter-TSS (NM_001153) 88 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 28927 chr9 13083001 13083105 + 0 NA Intergenic Intergenic -110420 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 11116 chr16 21952983 21953113 + 0 NA promoter-TSS (NM_003366) promoter-TSS (NM_003366) -16 NM_003366 7385 Hs.528803 NM_003366 ENSG00000140740 UQCRC2 MC3DN5|QCR2|UQCR2 ubiquinol-cytochrome c reductase core protein II protein-coding 25612 chr7 5822961 5823110 + 0 NA promoter-TSS (NR_023382) promoter-TSS (NR_023382) -125 NR_023382 401303 Hs.372707 NR_023382 ZNF815P ZNF815 zinc finger protein 815, pseudogene pseudo 24879 chr6 85450063 85450167 + 0 NA 5' UTR (NM_001204813, exon 1 of 8) 5' UTR (NM_001204813, exon 1 of 8) 531 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 14463 chr19 40666565 40666669 + 0 NA 3' UTR (NM_001289979, exon 9 of 9) 3' UTR (NM_001289979, exon 9 of 9) 23547 NM_001289980 9253 Hs.326953 NM_004756 ENSG00000105245 NUMBL CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23 NUMB like, endocytic adaptor protein protein-coding 19889 chr3 112562344 112562470 + 0 NA promoter-TSS (NM_001278712) promoter-TSS (NM_001278712) 397 NM_017945 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 2234 chr1 184953809 184953920 + 0 NA intron (NM_052966, intron 1 of 13) intron (NM_052966, intron 1 of 13) 20722 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 FAM129A C1orf24|GIG39|NIBAN family with sequence similarity 129 member A protein-coding 21166 chr4 9152626 9152773 + 0 NA Intergenic CpG -57958 NM_001256852 100287144 Hs.741130 NM_001256852 ENSG00000231396 USP17L10 - ubiquitin specific peptidase 17-like family member 10 protein-coding 5252 chr11 47553219 47553269 + 0 NA promoter-TSS (NM_006560) promoter-TSS (NM_006560) -4 NM_006560 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding 7938 chr13 20359459 20359623 + 0 NA Intergenic L1MB7|LINE|L1 74305 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 28061 chr8 78793326 78793479 + 0 NA intron (NM_000880, intron 2 of 5) Tigger1|DNA|TcMar-Tigger 12121 NM_001199888 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 15983 chr2 96857987 96858179 + 0 NA promoter-TSS (NM_016466) promoter-TSS (NM_016466) -64 NM_016466 51239 Hs.709507 NM_016466 ENSG00000213337 ANKRD39 - ankyrin repeat domain 39 protein-coding 10040 chr15 47812644 47812748 + 0 NA intron (NR_120336, intron 3 of 4) intron (NR_120336, intron 3 of 4) 33540 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 11748 chr16 82654017 82654115 + 0 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 27272 NM_001257 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 23615 chr5 158385215 158385319 + 0 NA intron (NR_109888, intron 1 of 6) MLT1M|LTR|ERVL-MaLR 24506 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LOC101927697 - uncharacterized LOC101927697 ncRNA 10407 chr15 72117571 72117707 + 0 NA promoter-TSS (NM_001172111) promoter-TSS (NM_001172111) 460 NM_006901 4649 Hs.513000 NM_006901 ENSG00000066933 MYO9A - myosin IXA protein-coding 20066 chr3 125063273 125063314 + 0 NA Intergenic Intergenic -7335 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 6721 chr12 20212840 20212978 + 0 NA Intergenic Intergenic -156336 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 28053 chr8 77118859 77118963 + 0 NA Intergenic MIRb|SINE|MIR -117867 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 22590 chr5 59591304 59591408 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -4858 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 11111 chr16 21159753 21159812 + 0 NA promoter-TSS (NM_017539) promoter-TSS (NM_017539) -341 NM_017539 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 26811 chr7 109641627 109641708 + 0 NA Intergenic Intergenic 318546 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 17825 chr20 25750997 25751101 + 0 NA promoter-TSS (NR_135006) promoter-TSS (NR_135006) -159 NR_135006 105372582 Hs.516951 NR_135006 LOC105372582 - uncharacterized LOC105372582 ncRNA 4391 chr10 114245563 114245742 + 0 NA intron (NM_001320804, intron 1 of 13) intron (NM_001320804, intron 1 of 13) 6038 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|NET42 von Willebrand factor A domain containing 2 protein-coding 29096 chr9 37785021 37785134 + 0 NA promoter-TSS (NM_016042) promoter-TSS (NM_016042) 15 NM_001002269 51010 Hs.602571 NM_016042 ENSG00000107371 EXOSC3 CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 exosome component 3 protein-coding 17718 chr20 19757480 19757579 + 0 NA Intergenic CpG -128992 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 11295 chr16 48003573 48003677 + 0 NA Intergenic MLT1O|LTR|ERVL-MaLR -116495 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 12124 chr17 14776239 14776343 + 0 NA Intergenic Intergenic -238514 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 29589 chr9 94649168 94649297 + 0 NA Intergenic MIR|SINE|MIR -8983 NM_001127628 2203 Hs.494496 NM_000507 ENSG00000165140 FBP1 FBP fructose-bisphosphatase 1 protein-coding 28184 chr8 91319635 91319743 + 0 NA intron (NM_001282356, intron 6 of 19) MamRTE1|LINE|RTE-BovB 70401 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 26507 chr7 83162892 83163028 + 0 NA promoter-TSS (NM_033026) promoter-TSS (NM_033026) -79 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 18771 chr22 29907856 29907982 + 0 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) 24750 NM_153051 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 16239 chr2 121185964 121186068 + 0 NA Intergenic Intergenic 99186 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 16539 chr2 160214731 160214835 + 0 NA Intergenic Intergenic -14470 NM_001282388 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 22313 chr5 19853941 19854045 + 0 NA intron (NM_001291956, intron 4 of 14) intron (NM_001291956, intron 4 of 14) 32279 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 17592 chr20 10671609 10671713 + 0 NA intron (NM_000214, intron 2 of 25) intron (NM_000214, intron 2 of 25) 2385 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|HJ1|JAGL1 jagged 1 protein-coding 7080 chr12 53938556 53938660 + 0 NA promoter-TSS (NM_017410) promoter-TSS (NM_017410) -184 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 28779 chr8 141228549 141228650 + 0 NA promoter-TSS (NM_001080431) promoter-TSS (NM_001080431) -25 NM_001286648 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 7311 chr12 78863956 78863991 + 0 NA promoter-TSS (NM_001291901) promoter-TSS (NM_001291901) -20 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 26574 chr7 91264308 91264311 + 0 NA promoter-TSS (NM_003505) promoter-TSS (NM_003505) -159 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 16679 chr2 174059594 174059698 + 0 NA Intergenic MER74B|LTR|ERVL 34366 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 20428 chr3 152834948 152835052 + 0 NA 5' UTR (NM_002563, exon 1 of 1) 5' UTR (NM_002563, exon 1 of 1) 307 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1 purinergic receptor P2Y1 protein-coding 28157 chr8 88715770 88715858 + 0 NA Intergenic Intergenic -388326 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 17485 chr20 3470956 3471095 + 0 NA promoter-TSS (NM_001207047) promoter-TSS (NM_001207047) 7 NM_001207047 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 1296 chr1 91611525 91611684 + 0 NA Intergenic Intergenic 110496 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 7636 chr12 109864971 109865103 + 0 NA intron (NM_016433, intron 1 of 4) intron (NM_016433, intron 1 of 4) 15451 NM_016433 51228 Hs.381256 NM_016433 ENSG00000139433 GLTP - glycolipid transfer protein protein-coding 12459 chr17 40311843 40311947 + 0 NA intron (NM_000964, intron 1 of 8) intron (NM_000964, intron 1 of 8) 2724 NM_000964 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 18093 chr20 45436946 45437050 + 0 NA Intergenic CpG 11488 NR_106870 102465487 NR_106870 ENSG00000273555 MIR6812 hsa-mir-6812 microRNA 6812 ncRNA 15508 chr2 47340123 47340267 + 0 NA intron (NR_110208, intron 1 of 4) intron (NR_110208, intron 1 of 4) 4879 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 LOC101927043 - uncharacterized LOC101927043 ncRNA 25922 chr7 27200236 27200340 + 0 NA promoter-TSS (NM_000522) promoter-TSS (NM_000522) -133 NR_037843 100316868 Hs.199486 NR_037843 HOTTIP HOXA-AS6|HOXA13-AS1|NCRNA00213 HOXA distal transcript antisense RNA ncRNA 16813 chr2 189784325 189784448 + 0 NA promoter-TSS (NM_001128150) promoter-TSS (NM_001128150) -15 NM_001128150 94101 Hs.700632 NM_016467 ENSG00000128699 ORMDL1 - ORMDL sphingolipid biosynthesis regulator 1 protein-coding 6445 chr12 1691439 1691441 + 0 NA intron (NM_024551, intron 1 of 7) CpG 359 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 27873 chr8 56173825 56173929 + 0 NA intron (NM_001114635, intron 1 of 2) intron (NM_001114635, intron 1 of 2) 37423 NM_002655 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 7114 chr12 55997114 55997228 + 0 NA promoter-TSS (NM_000456) promoter-TSS (NM_000456) -88 NM_001032386 6821 Hs.558403 NM_000456 ENSG00000139531 SUOX - sulfite oxidase protein-coding 1303 chr1 91885944 91886087 + 0 NA non-coding (NR_036634, exon 1 of 18) non-coding (NR_036634, exon 1 of 18) 264 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 21156 chr4 7929676 7929787 + 0 NA intron (NM_198595, intron 1 of 16) intron (NM_198595, intron 1 of 16) -9270 NM_203423 389199 Hs.375210 NM_203423 LOC389199 - uncharacterized LOC389199 protein-coding 5950 chr11 100777242 100777389 + 0 NA intron (NM_152432, intron 2 of 23) intron (NM_152432, intron 2 of 23) -89360 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 15899 chr2 85354508 85354641 + 0 NA promoter-TSS (NM_001135021) promoter-TSS (NM_001135021) 124 NM_017750 54884 Hs.440401 NM_017750 ENSG00000042445 RETSAT - retinol saturase protein-coding 20309 chr3 142586902 142587061 + 0 NA Intergenic Intergenic -8155 NM_001184 545 Hs.271791 NM_001184 ENSG00000175054 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 3510 chr10 30183015 30183105 + 0 NA Intergenic Intergenic -28792 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 26874 chr7 116500715 116500819 + 0 NA intron (NM_001233, intron 2 of 2) intron (NM_001233, intron 2 of 2) 723 NM_001206748 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 15 chr1 1231992 1232152 + 0 NA promoter-TSS (NM_016176) promoter-TSS (NM_016176) -5 NM_016176 51150 Hs.42806 NM_016176 ENSG00000078808 SDF4 Cab45|SDF-4 stromal cell derived factor 4 protein-coding 29935 chr9 114721540 114721644 + 0 NA Intergenic Intergenic -39503 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 LOC100505478 - uncharacterized LOC100505478 protein-coding 10994 chr16 10080567 10080694 + 0 NA intron (NM_000833, intron 3 of 13) intron (NM_000833, intron 3 of 13) 101437 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 19570 chr3 56557076 56557224 + 0 NA promoter-TSS (NM_001012506) promoter-TSS (NM_001012506) -6 NR_024460 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 4624 chr10 131900544 131900697 + 0 NA promoter-TSS (NM_001291310) promoter-TSS (NM_001291310) -24 NM_001291310 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 7255 chr12 71663894 71663998 + 0 NA promoter-TSS (NM_144982) promoter-TSS (NM_144982) 23 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 24079 chr6 13814443 13814485 + 0 NA promoter-TSS (NM_001031713) promoter-TSS (NM_001031713) 96 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 12642 chr17 49523790 49523971 + 0 NA intron (NR_103773, intron 1 of 2) intron (NR_103773, intron 1 of 2) 13063 NR_106751 102465141 NR_106751 ENSG00000277478 MIR6165 hsa-mir-6165 microRNA 6165 ncRNA 19760 chr3 100269847 100270039 + 0 NA intron (NM_001199198, intron 1 of 18) intron (NM_001199198, intron 1 of 18) 9126 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1 TBC1 domain family member 23 protein-coding 8768 chr14 24442850 24442896 + 0 NA promoter-TSS (NR_110032) promoter-TSS (NR_110032) 32 NM_001290292 56948 Hs.643552 NM_020195 ENSG00000100445 SDR39U1 C14orf124|HCDI short chain dehydrogenase/reductase family 39U member 1 protein-coding 4026 chr10 86756341 86756484 + 0 NA promoter-TSS (NM_004329) promoter-TSS (NM_004329) -227 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 24398 chr6 32844636 32844767 + 0 NA promoter-TSS (NM_148919) promoter-TSS (NM_148919) 234 NM_004159 5696 Hs.180062 NM_004159 ENSG00000204264 PSMB8 ALDD|D6S216|D6S216E|JMP|LMP7|NKJO|PSMB5i|RING10 proteasome subunit beta 8 protein-coding 21622 chr4 99949159 99949211 + 0 NA intron (NM_002106, intron 3 of 4) intron (NM_002106, intron 3 of 4) 1170 NM_002106 3015 Hs.119192 NM_002106 ENSG00000164032 H2AFZ H2A.Z-1|H2A.z|H2A/z|H2AZ H2A histone family member Z protein-coding 7205 chr12 62935034 62935044 + 0 NA promoter-TSS (NM_020700) promoter-TSS (NM_020700) -154 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 14991 chr2 10302598 10302611 + 0 NA promoter-TSS (NM_002149) promoter-TSS (NM_002149) -300 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 19265 chr3 24510077 24510198 + 0 NA Intergenic L3|LINE|CR1 11298 NR_039955 100616448 NR_039955 ENSG00000265028 MIR4792 miR-4792 microRNA 4792 ncRNA 25341 chr6 151052341 151052487 + 0 NA intron (NM_001242768, intron 26 of 27) L2c|LINE|L2 176043 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 6312 chr11 128026757 128026861 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger 495501 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 14192 chr19 14574334 14574454 + 0 NA Intergenic MER91C|DNA|hAT-Tip100 -2317 NM_004146 4713 Hs.532853 NM_004146 ENSG00000099795 NDUFB7 B18|CI-B18 NADH:ubiquinone oxidoreductase subunit B7 protein-coding 26466 chr7 77481736 77481861 + 0 NA Intergenic Intergenic -55658 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase, non-receptor type 12 protein-coding 859 chr1 50968516 50968638 + 0 NA promoter-TSS (NM_001262) promoter-TSS (NM_001262) -118 NM_001262 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 4284 chr10 103772412 103772492 + 0 NA intron (NM_014631, intron 2 of 13) intron (NM_014631, intron 2 of 13) 25673 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 8578 chr13 108769602 108769706 + 0 NA intron (NM_001198950, intron 4 of 34) L2|LINE|L2 140431 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 10934 chr16 3871261 3871365 + 0 NA intron (NM_004380, intron 1 of 30) intron (NM_004380, intron 1 of 30) 8807 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|RSTS CREB binding protein protein-coding 29642 chr9 97062564 97062668 + 0 NA Intergenic Intergenic 19329 NR_002942 340508 Hs.680438 NR_002942 ENSG00000228376 GAS2L1P2 - growth arrest specific 2 like 1 pseudogene 2 pseudo 28087 chr8 80807928 80808032 + 0 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 66801 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 14706 chr19 49850624 49850764 + 0 NA promoter-TSS (NR_130963) promoter-TSS (NR_130963) -41 NR_130963 53635 Hs.587979 NM_017432 ENSG00000104960 PTOV1 ACID2|PTOV-1 prostate tumor overexpressed 1 protein-coding 19110 chr3 5442615 5442719 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR -192412 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 25825 chr7 21767418 21767531 + 0 NA intron (NM_001277115, intron 55 of 81) intron (NM_001277115, intron 55 of 81) 178450 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 3967 chr10 79151854 79151958 + 0 NA intron (NM_020338, intron 3 of 24) intron (NM_020338, intron 3 of 24) 82871 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger MIZ-type containing 1 protein-coding 23026 chr5 112737804 112737908 + 0 NA promoter-TSS (NM_000038) promoter-TSS (NM_000038) -3 NM_001127510 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC, WNT signaling pathway regulator protein-coding 13055 chr17 77140512 77140655 + 0 NA promoter-TSS (NM_001143999) promoter-TSS (NM_001143999) -340 NM_001039573 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 3344 chr10 16817442 16817626 + 0 NA promoter-TSS (NM_012425) promoter-TSS (NM_012425) -80 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 4687 chr11 1796369 1796506 + 0 NA Intergenic Intergenic -32445 NM_001909 1509 Hs.654447 NM_001909 ENSG00000117984 CTSD CLN10|CPSD|HEL-S-130P cathepsin D protein-coding 6489 chr12 5807186 5807290 + 0 NA intron (NM_001278596, intron 8 of 25) intron (NM_001278596, intron 8 of 25) 138021 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 14660 chr19 48752826 48752960 + 0 NA 5' UTR (NM_001329877, exon 3 of 5) 5' UTR (NM_001329877, exon 3 of 5) 767 NM_001329877 2523 Hs.69747 NM_000148 ENSG00000174951 FUT1 H|HH|HSC fucosyltransferase 1 (H blood group) protein-coding 1759 chr1 153493474 153493598 + 0 NA Intergenic Intergenic -32875 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 21510 chr4 82395058 82395162 + 0 NA Intergenic MER21C|LTR|ERVL -21114 NM_002138 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 26818 chr7 110923002 110923164 + 0 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -167923 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 7916 chr12 132762126 132762260 + 0 NA promoter-TSS (NM_015114) promoter-TSS (NM_015114) -305 NM_015114 23141 Hs.654628 NM_015114 ENSG00000176915 ANKLE2 KIAA0692|LEMD7|Lem4|MCPH16 ankyrin repeat and LEM domain containing 2 protein-coding 6952 chr12 48682274 48682454 + 0 NA promoter-TSS (NM_017822) promoter-TSS (NM_017822) -112 NM_017822 54934 Hs.505412 NM_017822 ENSG00000139620 KANSL2 C12orf41|NSL2 KAT8 regulatory NSL complex subunit 2 protein-coding 9489 chr14 85421642 85421743 + 0 NA Intergenic LTR16C|LTR|ERVL 27777 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 7315 chr12 79408039 79408168 + 0 NA intron (NM_001135806, intron 8 of 9) intron (NM_001135806, intron 8 of 9) -11154 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 8183 chr13 42720509 42720665 + 0 NA Intergenic Intergenic -60963 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 9226 chr14 65255079 65255182 + 0 NA Intergenic MamGypLTR1a|LTR|Gypsy -32783 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 27547 chr8 23963254 23963358 + 0 NA Intergenic Intergenic -108499 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 15011 chr2 11370872 11370969 + 0 NA Intergenic Intergenic -23061 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 6430 chr12 570533 570637 + 0 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 15901 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 3026 chr1 236282005 236282188 + 0 NA promoter-TSS (NM_019891) promoter-TSS (NM_019891) -57 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 13082 chr17 78899546 78899676 + 0 NA intron (NM_001243541, intron 2 of 2) intron (NM_001243541, intron 2 of 2) 3606 NM_001243540 100653515 Hs.734636 NM_001243540 ENSG00000178404 CEP295NL DDC8|KIAA1731NL CEP295 N-terminal like protein-coding 1528 chr1 112715470 112715513 + 0 NA promoter-TSS (NM_005167) promoter-TSS (NM_005167) -163 NM_005167 333926 Hs.655231 NM_005167 ENSG00000155367 PPM1J PP2CZ|PP2Czeta|PPP2CZ protein phosphatase, Mg2+/Mn2+ dependent 1J protein-coding 14740 chr19 51367633 51367740 + 0 NA intron (NM_152353, intron 2 of 3) CpG-15033 -1268 NM_001985 2109 Hs.348531 NM_001985 ENSG00000105379 ETFB FP585|MADD electron transfer flavoprotein beta subunit protein-coding 20704 chr3 177345704 177345891 + 0 NA Intergenic Intergenic 51355 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 7615 chr12 108691683 108691861 + 0 NA intron (NM_014325, intron 2 of 10) intron (NM_014325, intron 2 of 10) 11226 NM_001105237 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 3064 chr1 240765905 240766048 + 0 NA Intergenic Intergenic -153814 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 19113 chr3 7509050 7509154 + 0 NA intron (NM_181874, intron 7 of 10) MER44B|DNA|TcMar-Tigger 26182 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 16662 chr2 172427372 172427491 + 0 NA promoter-TSS (NM_001316306) promoter-TSS (NM_001316306) 77 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 28888 chr9 4315699 4315851 + 0 NA Intergenic Intergenic -15740 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 18764 chr22 29622156 29622280 + 0 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 18662 NM_181832 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 28458 chr8 116444988 116445055 + 0 NA Intergenic Intergenic -119962 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 13023 chr17 75844864 75844968 + 0 NA promoter-TSS (NM_199242) promoter-TSS (NM_199242) -199 NM_199242 201294 Hs.41045 NM_199242 ENSG00000092929 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D protein-coding 22939 chr5 97297218 97297322 + 0 NA Intergenic L1MA3|LINE|L1 -113969 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 3589 chr10 38010479 38010677 + 0 NA promoter-TSS (NM_001278174) promoter-TSS (NM_001278174) -72 NM_001278174 7581 Hs.435774 NM_006954 ENSG00000189180 ZNF33A KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK zinc finger protein 33A protein-coding 14486 chr19 42051633 42051774 + 0 NA intron (NM_001301030, intron 10 of 18) intron (NM_001301030, intron 10 of 18) 14102 NM_002088 2901 Hs.367799 NM_002088 ENSG00000105737 GRIK5 EAA2|GRIK2|GluK5|KA2 glutamate ionotropic receptor kainate type subunit 5 protein-coding 18463 chr21 30227759 30227790 + 0 NA Intergenic Intergenic -11623 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 2129 chr1 178238877 178239011 + 0 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -102527 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 12286 chr17 29294092 29294252 + 0 NA promoter-TSS (NM_020772) promoter-TSS (NM_020772) -24 NM_020772 57532 Hs.462598 NM_020772 ENSG00000108256 NUFIP2 182-FIP|82-FIP|FIP-82|PIG1 NUFIP2, FMR1 interacting protein 2 protein-coding 723 chr1 41672426 41672514 + 0 NA intron (NM_001127714, intron 1 of 7) intron (NM_001127714, intron 1 of 7) -187787 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 8524 chr13 102596244 102596367 + 0 NA promoter-TSS (NM_001330588) promoter-TSS (NM_001330588) -631 NM_003291 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 15178 chr2 24490915 24491069 + 0 NA Intergenic CpG -93485 NM_003743 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 19700 chr3 88149789 88150023 + 0 NA promoter-TSS (NM_001195308) promoter-TSS (NM_001195308) -40 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 6941 chr12 47835917 47836021 + 0 NA Intergenic Intergenic -15989 NM_001308090 51564 Hs.200063 NM_015401 ENSG00000061273 HDAC7 HD7|HD7A|HDAC7A histone deacetylase 7 protein-coding 14900 chr2 677450 677535 + 0 NA promoter-TSS (NM_152834) promoter-TSS (NM_152834) -53 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 20610 chr3 169390316 169390468 + 0 NA intron (NM_004991, intron 1 of 16) intron (NM_004991, intron 1 of 16) -57475 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 1040 chr1 65148695 65148890 + 0 NA promoter-TSS (NM_001330616) promoter-TSS (NM_001330616) -211 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 27715 chr8 38996552 38996683 + 0 NA promoter-TSS (NM_078473) promoter-TSS (NM_078473) -95 NM_001024381 83877 Hs.7471 NM_031940 ENSG00000169490 TM2D2 BLP1 TM2 domain containing 2 protein-coding 19490 chr3 49132674 49132770 + 0 NA intron (NM_002292, intron 1 of 31) intron (NM_002292, intron 1 of 31) 444 NM_002292 3913 Hs.439726 NM_002292 ENSG00000172037 LAMB2 LAMS|NPHS5 laminin subunit beta 2 protein-coding 24312 chr6 30100870 30100974 + 0 NA Intergenic CpG -4318 NR_126470 104533120 Hs.548919 NR_126470 ENSG00000231226 TRIM31-AS1 - TRIM31 antisense RNA 1 ncRNA 28581 chr8 124626840 124626994 + 0 NA intron (NM_001282974, intron 3 of 13) intron (NM_001282974, intron 3 of 13) 87815 NM_001278645 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 8232 chr13 46948579 46948683 + 0 NA Intergenic Intergenic -51555 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 12061 chr17 7932053 7932159 + 0 NA promoter-TSS (NR_030684) promoter-TSS (NR_030684) -18 NM_053051 116840 Hs.348012 NM_053051 ENSG00000170037 CNTROB LIP8|PP1221 centrobin, centriole duplication and spindle assembly protein protein-coding 30970 chrX 110142213 110142391 + 0 NA intron (NM_032227, intron 4 of 6) intron (NM_032227, intron 4 of 6) 60184 NR_039774 100616491 NR_039774 ENSG00000265584 MIR3978 - microRNA 3978 ncRNA 27648 chr8 30658204 30658342 + 0 NA promoter-TSS (NM_002095) promoter-TSS (NM_002095) -52 NM_002095 2961 Hs.77100 NM_002095 ENSG00000197265 GTF2E2 FE|TF2E2|TFIIE-B|TTD6 general transcription factor IIE subunit 2 protein-coding 5766 chr11 85182862 85182966 + 0 NA intron (NM_001142699, intron 4 of 27) MER135|DNA|DNA -259493 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 30833 chrX 74118640 74118773 + 0 NA intron (NR_028379, intron 5 of 6) L1P4b|LINE|L1 99755 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 28434 chr8 110457887 110457991 + 0 NA Intergenic L3|LINE|CR1 -482092 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 2182 chr1 182101452 182101591 + 0 NA Intergenic Intergenic -39809 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 23869 chr6 1609749 1609858 + 0 NA promoter-TSS (NM_001453) promoter-TSS (NM_001453) -643 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 15297 chr2 30447136 30447301 + 0 NA promoter-TSS (NM_001002257) promoter-TSS (NM_001002257) -8 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 30649 chrX 44950906 44950988 + 0 NA intron (NM_021140, intron 2 of 28) LTR10D|LTR|ERV1 77772 NM_021140 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 5988 chr11 103888629 103888763 + 0 NA Intergenic L2c|LINE|L2 38790 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 22875 chr5 91280551 91280681 + 0 NA Intergenic CpG 33786 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 152 chr1 10474805 10474923 + 0 NA promoter-TSS (NM_004565) promoter-TSS (NM_004565) -82 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 10939 chr16 4253837 4253861 + 0 NA promoter-TSS (NR_039999) promoter-TSS (NR_039999) -60 NR_039999 100507501 Hs.632979 NR_039999 ENSG00000262468 LINC01569 - long intergenic non-protein coding RNA 1569 ncRNA 16492 chr2 156334744 156334848 + 0 NA Intergenic CpG -2021 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 11465 chr16 66020748 66020852 + 0 NA Intergenic Intergenic -345807 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 1419 chr1 101293817 101293921 + 0 NA Intergenic Intergenic -29968 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 10617 chr15 85588210 85588314 + 0 NA intron (NM_007200, intron 8 of 36) intron (NM_007200, intron 8 of 36) -31688 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 20439 chr3 153160611 153160833 + 0 NA Intergenic CpG -1490 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 17450 chr20 1809295 1809399 + 0 NA Intergenic Intergenic -29601 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 341 chr1 23344408 23344570 + 0 NA promoter-TSS (NM_001102397) promoter-TSS (NM_001102397) -125 NM_001102397 10236 Hs.373763 NM_005826 ENSG00000125944 HNRNPR HNRPR|hnRNP-R heterogeneous nuclear ribonucleoprotein R protein-coding 22151 chr5 1601731 1601884 + 0 NA intron (NR_003713, intron 3 of 3) intron (NR_003713, intron 3 of 3) -7276 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex flavoprotein subunit A pseudogene 3 pseudo 3586 chr10 36539077 36539181 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -586728 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 27093 chr7 139133636 139133842 + 0 NA promoter-TSS (NM_001321742) promoter-TSS (NM_001321742) -5 NM_001144920 79989 Hs.133020 NM_024926 ENSG00000105948 TTC26 DYF13|IFT56|dyf-13 tetratricopeptide repeat domain 26 protein-coding 2189 chr1 182218055 182218159 + 0 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 95954 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 27023 chr7 131556638 131556667 + 0 NA promoter-TSS (NM_005397) promoter-TSS (NM_005397) -35 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 23331 chr5 139914481 139914626 + 0 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 118732 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 14590 chr19 46222091 46222195 + 0 NA Intergenic Intergenic -7609 NM_198541 374918 Hs.546554 NM_198541 ENSG00000188293 IGFL1 APRG644|UNQ644 IGF like family member 1 protein-coding 15107 chr2 17878597 17878688 + 0 NA promoter-TSS (NM_002252) promoter-TSS (NM_002252) -15 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 14799 chr19 55166633 55166780 + 0 NA promoter-TSS (NM_001256714) promoter-TSS (NM_001256714) 16 NM_178837 352909 Hs.351582 NM_178837 ENSG00000167646 DNAAF3 C19orf51|CILD2|DAB1|PCD|PF22 dynein axonemal assembly factor 3 protein-coding 8157 chr13 40771205 40771362 + 0 NA promoter-TSS (NM_005830) promoter-TSS (NM_005830) -72 NM_005830 10240 Hs.596607 NM_005830 ENSG00000102738 MRPS31 IMOGN38|MRP-S31|S31mt mitochondrial ribosomal protein S31 protein-coding 27824 chr8 52825380 52825484 + 0 NA Intergenic Intergenic -110966 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 22795 chr5 81195136 81195266 + 0 NA intron (NM_006909, intron 18 of 26) intron (NM_006909, intron 18 of 26) -38119 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 11391 chr16 56191310 56191414 + 0 NA promoter-TSS (NM_138736) promoter-TSS (NM_138736) 23 NM_020988 2775 Hs.644524 NM_020988 ENSG00000087258 GNAO1 EIEE17|G-ALPHA-o|GNAO|HLA-DQB1 G protein subunit alpha o1 protein-coding 23372 chr5 141604451 141604635 + 0 NA intron (NM_005219, intron 1 of 27) intron (NM_005219, intron 1 of 27) 14512 NM_001079812 1729 Hs.529451 NM_005219 ENSG00000131504 DIAPH1 DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1 diaphanous related formin 1 protein-coding 10479 chr15 76196658 76196762 + 0 NA intron (NM_152335, intron 9 of 10) intron (NM_152335, intron 9 of 10) -15224 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 30788 chrX 68307848 68307928 + 0 NA intron (NM_002547, intron 2 of 24) intron (NM_002547, intron 2 of 24) 125569 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 20565 chr3 161348987 161349072 + 0 NA intron (NM_001320679, intron 2 of 3) intron (NM_001320679, intron 2 of 3) 23054 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 17118 chr2 219253928 219253983 + 0 NA promoter-TSS (NM_006000) promoter-TSS (NM_006000) -9 NM_006000 7277 Hs.75318 NM_006000 ENSG00000127824 TUBA4A ALS22|H2-ALPHA|TUBA1 tubulin alpha 4a protein-coding 10028 chr15 45522682 45522832 + 0 NA promoter-TSS (NM_013309) promoter-TSS (NM_013309) 47 NM_013309 7782 Hs.162989 NM_013309 ENSG00000104154 SLC30A4 ZNT4|znT-4 solute carrier family 30 member 4 protein-coding 12856 chr17 64919426 64919578 + 0 NA promoter-TSS (NM_001303255) promoter-TSS (NM_001303255) -22 NM_001303255 374819 Hs.551962 NM_199340 ENSG00000176809 LRRC37A3 LRRC37|LRRC37A leucine rich repeat containing 37 member A3 protein-coding 28538 chr8 121669866 121669970 + 0 NA Intergenic Intergenic -28528 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 19848 chr3 109927289 109927439 + 0 NA Intergenic Intergenic 324536 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 19672 chr3 73255617 73255721 + 0 NA Intergenic Intergenic 178327 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 28654 chr8 128127958 128128111 + 0 NA Intergenic Intergenic -22082 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 30877 chrX 100820237 100820332 + 0 NA promoter-TSS (NM_001325) promoter-TSS (NM_001325) -75 NM_001325 1478 Hs.132370 NM_001325 ENSG00000101811 CSTF2 CstF-64 cleavage stimulation factor subunit 2 protein-coding 309 chr1 20613926 20614078 + 0 NA intron (NM_001785, intron 3 of 3) intron (NM_001785, intron 3 of 3) -19453 NM_032409 65018 Hs.389171 NM_032409 ENSG00000158828 PINK1 BRPK|PARK6 PTEN induced putative kinase 1 protein-coding 28396 chr8 106245795 106245933 + 0 NA Intergenic Charlie3|DNA|hAT-Charlie -24314 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 824 chr1 46517101 46517343 + 0 NA Intergenic Intergenic 10226 NM_172225 127343 Hs.375623 NM_147192 ENSG00000197587 DMBX1 MBX|OTX3|PAXB diencephalon/mesencephalon homeobox 1 protein-coding 6369 chr11 130738130 130738234 + 0 NA Intergenic Intergenic 65226 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 25576 chr7 3911778 3911818 + 0 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -217887 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 21176 chr4 10116805 10116927 + 0 NA promoter-TSS (NM_005112) promoter-TSS (NM_005112) 83 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 18208 chr20 51195667 51195771 + 0 NA Intergenic MSTB|LTR|ERVL-MaLR -172581 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 1148 chr1 77979135 77979243 + 0 NA promoter-TSS (NR_130152) promoter-TSS (NR_130152) 16 NR_130152 8880 Hs.567380 NM_003902 ENSG00000162613 FUBP1 FBP|FUBP|hDH V far upstream element binding protein 1 protein-coding 4747 chr11 6431941 6431980 + 0 NA exon (NM_000613, exon 8 of 10) exon (NM_000613, exon 8 of 10) 9064 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 19330 chr3 33940257 33940397 + 0 NA Intergenic Intergenic 141756 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 2386 chr1 201955332 201955515 + 0 NA promoter-TSS (NM_006335) promoter-TSS (NM_006335) -68 NM_006335 10440 Hs.20716 NM_006335 ENSG00000134375 TIMM17A TIM17|TIM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) protein-coding 25399 chr6 157106674 157106778 + 0 NA intron (NM_020732, intron 6 of 19) intron (NM_020732, intron 6 of 19) 217533 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 21581 chr4 90174815 90174857 + 0 NA intron (NM_001145065, intron 1 of 10) L1ME1|LINE|L1 47303 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 18889 chr22 38180951 38181018 + 0 NA intron (NM_001199562, intron 1 of 15) intron (NM_001199562, intron 1 of 15) 770 NM_001004426 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 11049 chr16 14632863 14632967 + 0 NA 5' UTR (NM_016561, exon 1 of 8) 5' UTR (NM_016561, exon 1 of 8) 104 NM_016561 51283 Hs.435556 NM_016561 ENSG00000103429 BFAR BAR|RNF47 bifunctional apoptosis regulator protein-coding 26513 chr7 84025508 84025612 + 0 NA intron (NM_006080, intron 6 of 16) intron (NM_006080, intron 6 of 16) 169341 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 24252 chr6 27147167 27147271 + 0 NA promoter-TSS (NM_001312653) promoter-TSS (NM_001312653) 137 NM_080596 85235 Hs.352225 NM_080596 ENSG00000274997 HIST1H2AH H2A/S|H2AFALii|H2AH|dJ86C11.1 histone cluster 1 H2A family member h protein-coding 25420 chr6 158848584 158848688 + 0 NA intron (NR_028496, intron 2 of 2) MIR|SINE|MIR 8996 NR_028496 202459 Hs.487035 NM_145303 ENSG00000243775 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 25226 chr6 139219366 139219506 + 0 NA Intergenic Intergenic 72635 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 7457 chr12 95473928 95474126 + 0 NA promoter-TSS (NM_006838) promoter-TSS (NM_006838) -19 NR_133673 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 21458 chr4 75630557 75630692 + 0 NA promoter-TSS (NM_001330724) promoter-TSS (NM_001330724) -84 NM_001330724 8999 Hs.591698 NM_003948 ENSG00000138769 CDKL2 KKIAMRE|P56 cyclin dependent kinase like 2 protein-coding 19765 chr3 100525868 100525972 + 0 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 33301 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 26849 chr7 114889756 114889860 + 0 NA Intergenic Intergenic -32346 NM_001166346 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC MyoD family inhibitor domain containing protein-coding 23101 chr5 121969362 121969509 + 0 NA intron (NM_152546, intron 1 of 7) MamRep605|LTR?|LTR? 7474 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 16978 chr2 206614917 206615021 + 0 NA intron (NM_003812, intron 25 of 25) intron (NM_003812, intron 25 of 25) -29258 NM_001102659 200726 NM_001102659 ENSG00000235118 LOC200726 - hCG1657980 protein-coding 30322 chr9 133459543 133459647 + 0 NA promoter-TSS (NM_001242370) promoter-TSS (NM_001242370) -370 NM_001242370 11094 Hs.62003 NM_017586 ENSG00000160325 CACFD1 C9orf7|D9S2135|FLOWER calcium channel flower domain containing 1 protein-coding 15577 chr2 55779830 55779973 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -85991 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 17801 chr20 24406894 24406998 + 0 NA Intergenic Intergenic -62253 NM_024893 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 8179 chr13 42271772 42271876 + 0 NA promoter-TSS (NM_016248) promoter-TSS (NM_016248) -329 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 3570 chr10 34815345 34815449 + 0 NA promoter-TSS (NR_108043) promoter-TSS (NR_108043) -72 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 29041 chr9 33418212 33418329 + 0 NA Intergenic Intergenic -15588 NM_001318158 364 Hs.455323 NM_001170 ENSG00000165269 AQP7 AQP7L|AQPap|GLYCQTL aquaporin 7 protein-coding 28700 chr8 131366588 131366638 + 0 NA Intergenic MIR3|SINE|MIR -326024 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 19665 chr3 72628143 72628287 + 0 NA Intergenic Intergenic 36034 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 9083 chr14 57268796 57268983 + 0 NA promoter-TSS (NM_018229) promoter-TSS (NM_018229) 1 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 mu 1 subunit protein-coding 20896 chr3 188348796 188348935 + 0 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 123460 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 24814 chr6 79078174 79078276 + 0 NA promoter-TSS (NM_017934) promoter-TSS (NM_017934) 73 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 22307 chr5 19126179 19126230 + 0 NA Intergenic Intergenic 760068 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 19506 chr3 49903961 49904016 + 0 NA promoter-TSS (NM_001318913) promoter-TSS (NM_001318913) -351 NM_002447 4486 Hs.517973 NM_002447 ENSG00000164078 MST1R CD136|CDw136|NPCA3|PTK8|RON macrophage stimulating 1 receptor protein-coding 18057 chr20 44177290 44177402 + 0 NA 3' UTR (NM_175913, exon 2 of 2) 3' UTR (NM_175913, exon 2 of 2) 10232 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 24306 chr6 29942330 29942494 + 0 NA promoter-TSS (NM_001242758) promoter-TSS (NM_001242758) -58 NM_001242758 3105 Hs.181244 NM_002116 ENSG00000206503 HLA-A HLAA major histocompatibility complex, class I, A protein-coding 1811 chr1 155227538 155227664 + 0 NA promoter-TSS (NR_002188).2 promoter-TSS (NR_002188).2 -67 NR_002188 2630 Hs.719930 NR_002188 ENSG00000160766 GBAP1 GBAP glucosylceramidase beta pseudogene 1 pseudo 4964 chr11 18588819 18588923 + 0 NA promoter-TSS (NM_001040697) promoter-TSS (NM_001040697) -125 NM_001261382 55293 Hs.407991 NM_018314 ENSG00000151116 UEVLD ATTP|UEV3 UEV and lactate/malate dehyrogenase domains protein-coding 30927 chrX 107000147 107000333 + 0 NA promoter-TSS (NM_001085354) promoter-TSS (NM_001085354) 4 NM_024657 79710 Hs.496544 NM_024657 ENSG00000133131 MORC4 ZCW4|ZCWCC2|dJ75H8.2 MORC family CW-type zinc finger 4 protein-coding 24424 chr6 33781532 33781636 + 0 NA intron (NM_181336, intron 3 of 8) intron (NM_181336, intron 3 of 8) 5358 NM_001143944 221496 Hs.444845 NM_181336 ENSG00000161904 LEMD2 CTRCT42|NET25|dJ482C21.1 LEM domain containing 2 protein-coding 22461 chr5 43040377 43040481 + 0 NA promoter-TSS (NM_001014279) promoter-TSS (NM_001014279) -84 NM_001014279 389289 Hs.529385 NM_001014279 ENSG00000177721 ANXA2R AX2R|AXIIR|C5orf39 annexin A2 receptor protein-coding 4412 chr10 114821779 114821807 + 0 NA promoter-TSS (NM_020940) promoter-TSS (NM_020940) 49 NM_020940 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 5427 chr11 64240479 64240583 + 0 NA promoter-TSS (NM_001135208) promoter-TSS (NM_001135208) -410 NM_004470 2286 Hs.227729 NM_004470 ENSG00000173486 FKBP2 FKBP-13|PPIase FK506 binding protein 2 protein-coding 30390 chr9 137423235 137423273 + 0 NA promoter-TSS (NM_001256068) promoter-TSS (NM_001256068) 8 NR_104599 54932 Hs.495553 NM_017820 ENSG00000187609 EXD3 mut-7 exonuclease 3'-5' domain containing 3 protein-coding 24778 chr6 71288660 71288830 + 0 NA 5' UTR (NM_001324266, exon 1 of 7) 5' UTR (NM_001324266, exon 1 of 7) 303 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 24799 chr6 75206005 75206206 + 0 NA promoter-TSS (NM_080645) promoter-TSS (NM_080645) -198 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|UCMD2 collagen type XII alpha 1 chain protein-coding 19205 chr3 15011283 15011379 + 0 NA intron (NM_003298, intron 3 of 14) AluJb|SINE|Alu 54006 NR_135246 64432 Hs.657764 NM_022497 ENSG00000131368 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 2863 chr1 226815183 226815287 + 0 NA Intergenic Intergenic -55337 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 568 chr1 32981371 32981427 + 0 NA Intergenic Intergenic -16586 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 22761 chr5 77620499 77620603 + 0 NA Intergenic Intergenic 18146 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 8404 chr13 79079553 79079657 + 0 NA Intergenic L1PBa1|LINE|L1 -239555 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 29576 chr9 93884981 93885089 + 0 NA Intergenic L1MB4|LINE|L1 65678 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 10197 chr15 59294719 59294812 + 0 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 78107 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 29711 chr9 100749058 100749204 + 0 NA Intergenic L1PA5|LINE|L1 171052 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 MURC CAVIN4|cavin-4 muscle related coiled-coil protein protein-coding 28442 chr8 115056401 115056505 + 0 NA Intergenic Intergenic 611559 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 5086 chr11 30911422 30911526 + 0 NA intron (NM_020869, intron 8 of 19) intron (NM_020869, intron 8 of 19) 81212 NM_020869 100506627 Hs.530438 NM_020869 ENSG00000170959 DCDC5 - doublecortin domain containing 5 protein-coding 11124 chr16 22297173 22297302 + 0 NA promoter-TSS (NM_001258033) promoter-TSS (NM_001258033) -138 NM_001258034 55718 Hs.460298 NM_018119 ENSG00000058600 POLR3E RPC5|SIN RNA polymerase III subunit E protein-coding 14485 chr19 41957919 41958056 + 0 NA intron (NM_006423, intron 3 of 4) GA-rich|Low_complexity|Low_complexity 1389 NM_006423 10567 Hs.11417 NM_006423 ENSG00000105404 RABAC1 PRA1|PRAF1|YIP3 Rab acceptor 1 protein-coding 17490 chr20 3796238 3796273 + 0 NA 5' UTR (NM_004358, exon 1 of 16) 5' UTR (NM_004358, exon 1 of 16) 516 NM_021872 994 Hs.153752 NM_004358 ENSG00000101224 CDC25B - cell division cycle 25B protein-coding 10527 chr15 80033396 80033459 + 0 NA Intergenic Intergenic -26141 NM_001242917 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 15422 chr2 42361447 42361596 + 0 NA promoter-TSS (NM_001319038) promoter-TSS (NM_001319038) -278 NR_134947 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 12200 chr17 19753158 19753290 + 0 NA Intergenic Intergenic -4791 NM_000691 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 13638 chr18 57909686 57909812 + 0 NA Intergenic Tigger15a|DNA|TcMar-Tigger -106654 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 14519 chr19 44164885 44165052 + 0 NA promoter-TSS (NM_001146220) promoter-TSS (NM_001146220) -94 NM_001319090 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 15513 chr2 47768025 47768129 + 0 NA Intergenic Intergenic -15005 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 19962 chr3 118478865 118478969 + 0 NA Intergenic MER41B|LTR|ERV1 -162851 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 1352 chr1 94925748 94925852 + 0 NA promoter-TSS (NM_001286056) promoter-TSS (NM_001286056) 8 NM_001286056 1266 Hs.483454 NM_001839 ENSG00000117519 CNN3 - calponin 3 protein-coding 15530 chr2 50659069 50659173 + 0 NA intron (NM_001135659, intron 5 of 23) intron (NM_001135659, intron 5 of 23) 37141 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 26773 chr7 105532124 105532235 + 0 NA promoter-TSS (NM_001346599) promoter-TSS (NM_001346599) 98 NR_144478 60561 Hs.531388 NM_021930 ENSG00000135249 RINT1 RINT-1 RAD50 interactor 1 protein-coding 18591 chr21 45427784 45427983 + 0 NA intron (NM_130445, intron 2 of 42) intron (NM_130445, intron 2 of 42) -2813 NR_027498 378832 Hs.517353 NM_199175 ENSG00000183535 COL18A1-AS1 C21orf123|NCRNA00175|PRED80 COL18A1 antisense RNA 1 ncRNA 1621 chr1 143238057 143238211 + 0 NA Intergenic Intergenic 184458 NR_027354 645166 Hs.744183 NR_027354 LOC645166 - lymphocyte-specific protein 1 pseudogene pseudo 14117 chr19 11435213 11435317 + 0 NA promoter-TSS (NM_001302454) promoter-TSS (NM_001302454) 8 NM_001289103 5589 Hs.610830 NM_002743 ENSG00000130175 PRKCSH AGE-R2|G19P1|GIIB|PCLD|PCLD1|PKCSH|PLD1|VASAP-60 protein kinase C substrate 80K-H protein-coding 18350 chr20 59751254 59751358 + 0 NA intron (NM_183244, intron 3 of 12) intron (NM_183244, intron 3 of 12) 30096 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 7681 chr12 113245911 113246068 + 0 NA intron (NM_001301214, intron 1 of 26) intron (NM_001301214, intron 1 of 26) 1728 NM_001301214 53373 Hs.524763 NM_017901 ENSG00000186815 TPCN1 TPC1 two pore segment channel 1 protein-coding 22625 chr5 64457997 64458086 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -47906 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G-protein signaling 7 binding protein protein-coding 7516 chr12 100200654 100200808 + 0 NA promoter-TSS (NR_048568) promoter-TSS (NR_048568) -46 NR_048568 64431 Hs.115088 NM_022496 ENSG00000075089 ACTR6 ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX ARP6 actin-related protein 6 homolog protein-coding 15906 chr2 85505051 85505247 + 0 NA Intergenic Intergenic 33737 NR_038942 100630918 Hs.66049 NR_038942 PARTICL PARTICLE promoter of MAT2A antisense radiation-induced circulating long non-coding RNA ncRNA 28633 chr8 127265659 127265763 + 0 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 21074 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 12159 chr17 17281182 17281349 + 0 NA promoter-TSS (NM_001199125) promoter-TSS (NM_001199125) 38 NM_001316358 8533 Hs.6076 NM_003653 ENSG00000141030 COPS3 CSN3|SGN3 COP9 signalosome subunit 3 protein-coding 109 chr1 8004806 8004941 + 0 NA Intergenic Intergenic 21460 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 21783 chr4 127709047 127709217 + 0 NA intron (NM_015693, intron 13 of 15) LTR16|LTR|ERVL -21246 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 5232 chr11 46183914 46184018 + 0 NA Intergenic MIRb|SINE|MIR 12011 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 13747 chr18 68715108 68715247 + 0 NA promoter-TSS (NM_019022) promoter-TSS (NM_019022) -61 NM_019022 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 13874 chr19 1812752 1812893 + 0 NA promoter-TSS (NM_001178002) promoter-TSS (NM_001178002) -546 NM_138813 148229 Hs.306212 NM_138813 ENSG00000130270 ATP8B3 ATPIK ATPase phospholipid transporting 8B3 protein-coding 27234 chr7 151491967 151492094 + 0 NA intron (NM_005614, intron 1 of 7) intron (NM_005614, intron 1 of 7) 27894 NM_005614 6009 Hs.283521 NM_005614 ENSG00000106615 RHEB RHEB2 Ras homolog enriched in brain protein-coding 26913 chr7 121313589 121313705 + 0 NA Intergenic Intergenic -11720 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 11661 chr16 75565157 75565304 + 0 NA Intergenic Intergenic -1121 NM_007285 11345 Hs.461379 NM_007285 ENSG00000034713 GABARAPL2 ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2 GABA type A receptor associated protein like 2 protein-coding 21677 chr4 107720329 107720453 + 0 NA promoter-TSS (NM_005443) promoter-TSS (NM_005443) -128 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 9214 chr14 64942805 64942925 + 0 NA promoter-TSS (NM_002083) promoter-TSS (NM_002083) 40 NR_046321 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 2651 chr1 213123663 213123767 + 0 NA intron (NM_012424, intron 5 of 14) intron (NM_012424, intron 5 of 14) 72482 NM_001287219 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 14931 chr2 3738616 3738720 + 0 NA intron (NM_001287444, intron 3 of 10) intron (NM_001287444, intron 3 of 10) 35076 NM_001287444 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 29057 chr9 34612167 34612328 + 0 NA promoter-TSS (NM_148178) promoter-TSS (NM_148178) -134 NM_148178 138716 Hs.15961 NM_148178 ENSG00000164967 RPP25L C9orf23|bA296L22.5 ribonuclease P/MRP subunit p25 like protein-coding 31056 chrX 130165775 130165880 + 0 NA promoter-TSS (NM_001130847) promoter-TSS (NM_001130847) 60 NR_132647 9131 Hs.424932 NM_004208 ENSG00000156709 AIFM1 AIF|CMT2D|CMTX4|COWCK|COXPD6|DFNX5|NADMR|NAMSD|PDCD8 apoptosis inducing factor, mitochondria associated 1 protein-coding 25306 chr6 148858007 148858111 + 0 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 106625 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 16242 chr2 121530799 121530941 + 0 NA promoter-TSS (NR_023343) promoter-TSS (NR_023343) -10 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 2797 chr1 223738992 223739086 + 0 NA intron (NM_001146068, intron 2 of 20) LTR33|LTR|ERVL 26622 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 6437 chr12 1014177 1014331 + 0 NA intron (NR_027946, intron 1 of 18) AluSx|SINE|Alu -13494 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 5869 chr11 94028483 94028587 + 0 NA intron (NM_001098672, intron 1 of 19) intron (NM_001098672, intron 1 of 19) 7323 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin like 1 protein-coding 10184 chr15 58771179 58771264 + 0 NA promoter-TSS (NM_001040453) promoter-TSS (NM_001040453) 29 NM_001040450 54629 Hs.591122 NM_019092 ENSG00000128923 FAM63B - family with sequence similarity 63 member B protein-coding 17601 chr20 11001966 11002122 + 0 NA Intergenic Intergenic -92772 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 3682 chr10 51879364 51879468 + 0 NA intron (NM_001098512, intron 4 of 17) L2c|LINE|L2 -179821 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 8595 chr13 109795129 109795233 + 0 NA Intergenic L1ME4b|LINE|L1 -8614 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 18435 chr21 17925105 17925209 + 0 NA intron (NM_001204177, intron 1 of 4) intron (NM_001204177, intron 1 of 4) 7817 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 14265 chr19 18365149 18365263 + 0 NA non-coding (NR_138029, exon 6 of 6) non-coding (NR_138029, exon 6 of 6) -20754 NM_004864 9518 Hs.616962 NM_004864 ENSG00000130513 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 17325 chr2 235779585 235779689 + 0 NA intron (NM_001037131, intron 6 of 17) intron (NM_001037131, intron 6 of 17) 273886 NR_131900 100506749 Hs.684184 NR_131900 ENSG00000235529 AGAP1-IT1 - AGAP1 intronic transcript 1 ncRNA 13912 chr19 2900821 2900903 + 0 NA promoter-TSS (NM_173480) promoter-TSS (NM_173480) -36 NM_173480 126295 Hs.591378 NM_173480 ENSG00000171970 ZNF57 ZNF424 zinc finger protein 57 protein-coding 7160 chr12 57430998 57431147 + 0 NA promoter-TSS (NM_001330121) promoter-TSS (NM_001330121) -67 NM_014925 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 30597 chrX 30889388 30889556 + 0 NA promoter-TSS (NM_152787) promoter-TSS (NM_152787) -78 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding 23713 chr5 172102965 172103069 + 0 NA intron (NM_005990, intron 7 of 18) intron (NM_005990, intron 7 of 18) 85325 NM_005990 6793 Hs.744005 NM_005990 ENSG00000072786 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 27254 chr7 154928364 154928498 + 0 NA promoter-TSS (NR_024477) promoter-TSS (NR_024477) -86 NR_024477 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 18951 chr22 41367295 41367313 + 0 NA promoter-TSS (NM_001145398) promoter-TSS (NM_001145398) -29 NM_001145398 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF, PAR bZIP transcription factor protein-coding 7806 chr12 122526957 122527048 + 0 NA promoter-TSS (NM_023012) promoter-TSS (NM_023012) 11 NR_036434 65117 Hs.432996 NM_023012 ENSG00000111011 RSRC2 - arginine and serine rich coiled-coil 2 protein-coding 24402 chr6 32953216 32953320 + 0 NA promoter-TSS (NM_006120).6 promoter-TSS (NM_006120).6 -146 NM_006120 3108 Hs.728759 NM_006120 ENSG00000204257 HLA-DMA D6S222E|DMA|HLADM|RING6 major histocompatibility complex, class II, DM alpha protein-coding 7840 chr12 123995344 123995448 + 0 NA intron (NM_152437, intron 3 of 4) MER5A1|DNA|hAT-Charlie 22181 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 11025 chr16 11742947 11743005 + 0 NA promoter-TSS (NM_001324022) promoter-TSS (NM_001324022) -98 NM_001324024 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 3982 chr10 80204348 80204384 + 0 NA 5' UTR (NM_001278408, exon 1 of 17) 5' UTR (NM_001278408, exon 1 of 17) 125 NM_001278408 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ANX11|CAP50 annexin A11 protein-coding 30816 chrX 71283537 71283613 + 0 NA 5' UTR (NM_001145408, exon 1 of 13) 5' UTR (NM_001145408, exon 1 of 13) 383 NM_001145408 4841 Hs.533282 NM_007363 ENSG00000147140 NONO MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114 non-POU domain containing, octamer-binding protein-coding 8639 chr13 113187394 113187544 + 0 NA intron (NM_018386, intron 7 of 14) L1M4|LINE|L1 -20724 NM_001278513 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 29256 chr9 74952284 74952430 + 0 NA promoter-TSS (NR_121183) promoter-TSS (NR_121183) 529 NM_017998 55071 Hs.532296 NM_017998 ENSG00000135045 C9orf40 - chromosome 9 open reading frame 40 protein-coding 24230 chr6 26272840 26273014 + 0 NA promoter-TSS (NM_003525) promoter-TSS (NM_003525) -49 NM_003525 8346 Hs.553506 NM_003525 ENSG00000278588 HIST1H2BI H2B/k|H2BFK histone cluster 1 H2B family member i protein-coding 22653 chr5 66850493 66850581 + 0 NA intron (NM_015183, intron 1 of 27) Tigger4b|DNA|TcMar-Tigger 21761 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 13260 chr18 9914967 9915071 + 0 NA intron (NM_194434, intron 1 of 5) CpG 1061 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 14162 chr19 13731614 13731718 + 0 NA promoter-TSS (NM_001320561) promoter-TSS (NM_001320561) -94 NM_001320565 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 30729 chrX 51893513 51893634 + 0 NA promoter-TSS (NM_006986) promoter-TSS (NM_006986) -29 NM_001005333 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 28604 chr8 125644485 125644664 + 0 NA Intergenic Intergenic 212365 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 26118 chr7 41224557 41224696 + 0 NA Intergenic Intergenic 123022 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 13175 chr17 82528968 82529072 + 0 NA intron (NM_004514, intron 1 of 8) MER20|DNA|hAT-Charlie 9302 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 22942 chr5 98307893 98307997 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -461350 NM_001012761 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule family member b protein-coding 25120 chr6 126040936 126041085 + 0 NA Intergenic Intergenic 54580 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 30134 chr9 127224437 127224541 + 0 NA Intergenic CpG -39173 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 21875 chr4 146175659 146175798 + 0 NA promoter-TSS (NM_007080) promoter-TSS (NM_007080) 45 NM_007080 11157 Hs.190520 NM_007080 ENSG00000164167 LSM6 YDR378C LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 13491 chr18 45565734 45565838 + 0 NA intron (NM_001242692, intron 2 of 20) intron (NM_001242692, intron 2 of 20) -49015 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 3507 chr10 29951890 29951978 + 0 NA Intergenic Intergenic 107625 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 22842 chr5 87746992 87747096 + 0 NA Intergenic Intergenic -334011 NM_001239 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 23366 chr5 141514443 141514556 + 0 NA TTS (NM_001314007) TTS (NM_001314007) 25258 NM_018929 56097 Hs.368160 NM_018929 ENSG00000240764 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 20462 chr3 155323190 155323294 + 0 NA Intergenic Intergenic -29542 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 5733 chr11 80722603 80722707 + 0 NA Intergenic Intergenic 40148 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 17670 chr20 16021229 16021333 + 0 NA intron (NM_001033087, intron 11 of 13) intron (NM_001033087, intron 11 of 13) -35399 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 10846 chr16 695905 696023 + 0 NA intron (NM_153350, intron 2 of 5) intron (NM_153350, intron 2 of 5) -5540 NM_032259 84219 Hs.459632 NM_032259 ENSG00000127580 WDR24 C16orf21|JFP7 WD repeat domain 24 protein-coding 7553 chr12 103841932 103842036 + 0 NA promoter-TSS (NM_001031701) promoter-TSS (NM_001031701) -787 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 1157 chr1 78831769 78831873 + 0 NA Intergenic Intergenic 174989 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 1470 chr1 109240258 109240429 + 0 NA Intergenic Intergenic -9676 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 25414 chr6 158452339 158452443 + 0 NA intron (NM_001007466, intron 5 of 12) intron (NM_001007466, intron 5 of 12) -84045 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 24639 chr6 47107044 47107127 + 0 NA Intergenic L2c|LINE|L2 -64722 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 15589 chr2 56372196 56372284 + 0 NA intron (NM_001080433, intron 3 of 5) intron (NM_001080433, intron 3 of 5) -186470 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 15377 chr2 38377471 38377575 + 0 NA promoter-TSS (NM_022374) promoter-TSS (NM_022374) -100 NM_001330458 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 16763 chr2 181546127 181546231 + 0 NA intron (NR_027690, intron 9 of 11) intron (NR_027690, intron 9 of 11) 89287 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 14204 chr19 15672911 15673006 + 0 NA promoter-TSS (NR_117085) promoter-TSS (NR_117085) -60 NR_117085 66002 Hs.131459 NM_023944 ENSG00000186204 CYP4F12 CYPIVF12|F22329_1 cytochrome P450 family 4 subfamily F member 12 protein-coding 23121 chr5 124596941 124597033 + 0 NA Intergenic Intergenic 148125 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 7464 chr12 96073487 96073687 + 0 NA Intergenic Intergenic -30067 NM_001256644 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 25259 chr6 143450642 143450735 + 0 NA promoter-TSS (NM_182503) promoter-TSS (NM_182503) 16 NM_182503 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase, tRNA specific 2 protein-coding 23977 chr6 7618521 7618604 + 0 NA Intergenic MamGypLTR3a|LTR|Gypsy 28363 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 17291 chr2 232902077 232902171 + 0 NA intron (NM_001114090, intron 3 of 12) intron (NM_001114090, intron 3 of 12) 26027 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 22720 chr5 73820430 73820534 + 0 NA intron (NM_001244364, intron 1 of 27) LTR81B|LTR|Gypsy 6964 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 22730 chr5 74624611 74624764 + 0 NA Intergenic Intergenic -15336 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 22158 chr5 1973780 1973905 + 0 NA Intergenic Intergenic 86511 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 15602 chr2 58614388 58614492 + 0 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 93687 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 30984 chrX 115030793 115030924 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -13214 NM_000640 3598 Hs.336046 NM_000640 ENSG00000123496 IL13RA2 CD213A2|CT19|IL-13R|IL13BP interleukin 13 receptor subunit alpha 2 protein-coding 1006 chr1 63662200 63662288 + 0 NA Intergenic Intergenic 39028 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 7025 chr12 52215657 52215817 + 0 NA intron (NR_027358, intron 3 of 4) intron (NR_027358, intron 3 of 4) 4807 NR_027358 283404 Hs.662443 NR_027358 ENSG00000258279 LINC00592 - long intergenic non-protein coding RNA 592 ncRNA 5773 chr11 85743039 85743142 + 0 NA intron (NM_001289608, intron 3 of 18) intron (NM_001289608, intron 3 of 18) 14979 NM_001162951 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 27294 chr7 158595212 158595316 + 0 NA Intergenic (GGTGGT)n|Simple_repeat|Simple_repeat 3648 NR_049893 100847032 NR_049893 ENSG00000265598 MIR5707 - microRNA 5707 ncRNA 17686 chr20 17682302 17682435 + 0 NA promoter-TSS (NM_004587) promoter-TSS (NM_004587) -85 NM_001042576 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 14948 chr2 8678784 8678936 + 0 NA TTS (NR_110153) TTS (NR_110153) 3001 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 (head to head) ncRNA 19128 chr3 8963401 8963546 + 0 NA promoter-TSS (NM_020165) promoter-TSS (NM_020165) 2 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18, E3 ubiquitin protein ligase protein-coding 29387 chr9 83649302 83649406 + 0 NA Intergenic Intergenic 26305 NR_046421 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK, gluconokinase protein-coding 996 chr1 62436345 62436413 + 0 NA promoter-TSS (NM_001017415) promoter-TSS (NM_001017415) 75 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 15033 chr2 12318418 12318503 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 119330 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 12504 chr17 41801659 41801748 + 0 NA TTS (NM_006455) TTS (NM_006455) 10496 NM_006455 10609 Hs.446459 NM_006455 ENSG00000141696 P3H4 LEPREL4|NO55|NOL55|SC65 prolyl 3-hydroxylase family member 4 (non-enzymatic) protein-coding 14753 chr19 52189704 52189851 + 0 NA promoter-TSS (NM_014225) promoter-TSS (NM_014225) -25 NR_033500 5518 Hs.467192 NM_014225 ENSG00000105568 PPP2R1A MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A protein phosphatase 2 scaffold subunit Aalpha protein-coding 30455 chrX 4476951 4477055 + 0 NA Intergenic Intergenic 156569 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 4596 chr10 127738614 127738786 + 0 NA exon (NM_207426, exon 2 of 2) exon (NM_207426, exon 2 of 2) 1426 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 8632 chr13 112588132 112588236 + 0 NA promoter-TSS (NM_001286277) promoter-TSS (NM_001286277) 1 NM_006322 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 2069 chr1 171485384 171485532 + 0 NA promoter-TSS (NM_015172) promoter-TSS (NM_015172) -69 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 28747 chr8 134905797 134905901 + 0 NA Intergenic Intergenic 55914 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 14236 chr19 17267109 17267263 + 0 NA promoter-TSS (NM_001033549) promoter-TSS (NM_001033549) -190 NM_001288756 29086 Hs.190722 NM_014173 ENSG00000105393 BABAM1 C19orf62|HSPC142|MERIT40|NBA1 BRISC and BRCA1 A complex member 1 protein-coding 15224 chr2 27081311 27081466 + 0 NA intron (NM_007046, intron 3 of 7) intron (NM_007046, intron 3 of 7) 2821 NM_007046 11117 Hs.63348 NM_007046 ENSG00000138080 EMILIN1 EMI|EMILIN|gp115 elastin microfibril interfacer 1 protein-coding 1661 chr1 148038645 148038799 + 0 NA TTS (NR_004426) TTS (NR_004426) 194 NR_004426 26864 NR_004426 ENSG00000206585 RNVU1-7 RNU1-26P|RNU1-6|RNU1-6P|RNU1-9|RNU1-9P|RNVU1-9|vU1.7|vU1.9 RNA, variant U1 small nuclear 7 snRNA 12847 chr17 64496980 64497111 + 0 NA promoter-TSS (NM_007215) promoter-TSS (NM_007215) 21 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 7351 chr12 85036292 85036396 + 0 NA promoter-TSS (NM_001100917) promoter-TSS (NM_001100917) 23 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 11316 chr16 49281954 49282115 + 0 NA promoter-TSS (NM_004352) promoter-TSS (NM_004352) -203 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 28848 chr8 144767540 144767587 + 0 NA Intergenic Intergenic -11978 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 5137 chr11 34438757 34438879 + 0 NA promoter-TSS (NM_001752) promoter-TSS (NM_001752) -107 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 26156 chr7 43674762 43674816 + 0 NA intron (NR_047701, intron 1 of 7) intron (NR_047701, intron 1 of 7) 54752 NR_135581 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 23744 chr5 173328482 173328586 + 0 NA 5' UTR (NM_003714, exon 1 of 4) 5' UTR (NM_003714, exon 1 of 4) 969 NM_003714 8614 Hs.233160 NM_003714 ENSG00000113739 STC2 STC-2|STCRP stanniocalcin 2 protein-coding 1160 chr1 79198950 79199054 + 0 NA Intergenic Intergenic -192192 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 19355 chr3 37987053 37987177 + 0 NA Intergenic Intergenic -6472 NM_015873 50853 Hs.103665 NM_015873 ENSG00000136059 VILL - villin like protein-coding 30397 chr9 137618761 137618876 + 0 NA promoter-TSS (NR_122036) promoter-TSS (NR_122036) 77 NR_122035 85026 Hs.522520 NM_032937 ENSG00000203993 ARRDC1-AS1 C9orf37 ARRDC1 antisense RNA 1 ncRNA 9453 chr14 80389184 80389288 + 0 NA intron (NR_038355, intron 5 of 8) intron (NR_038355, intron 5 of 8) -158182 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 869 chr1 51878817 51878921 + 0 NA promoter-TSS (NM_001242361) promoter-TSS (NM_001242361) 68 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 21705 chr4 112083294 112083398 + 0 NA Intergenic Intergenic -62051 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 C4orf32 - chromosome 4 open reading frame 32 protein-coding 5886 chr11 94749510 94749669 + 0 NA Intergenic LTR33|LTR|ERVL -9234 NR_135096 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 15072 chr2 15561307 15561411 + 0 NA promoter-TSS (NR_052013) promoter-TSS (NR_052013) -11 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 18439 chr21 26390316 26390461 + 0 NA Intergenic Intergenic -3247 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 15009 chr2 11344696 11344845 + 0 NA promoter-TSS (NM_004850) promoter-TSS (NM_004850) -185 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 24596 chr6 43516978 43517132 + 0 NA promoter-TSS (NM_015388) promoter-TSS (NM_015388) 31 NM_203290 9533 Hs.743509 NM_004875 ENSG00000171453 POLR1C AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3 RNA polymerase I subunit C protein-coding 17423 chr20 365079 365177 + 0 NA Intergenic Intergenic -15501 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 16441 chr2 148645365 148645393 + 0 NA intron (NM_015630, intron 1 of 13) CpG 388 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 30639 chrX 42085982 42086086 + 0 NA Intergenic Intergenic -163000 NM_001126054 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8 calcium/calmodulin dependent serine protein kinase protein-coding 4114 chr10 95273691 95273696 + 0 NA intron (NM_020992, intron 1 of 6) L4_C_Mam|LINE|RTE-X 17455 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 26862 chr7 116097527 116097677 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -66789 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 25005 chr6 109893170 109893215 + 0 NA Intergenic HERV3-int|LTR|ERV1 -85064 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 5134 chr11 34379274 34379378 + 0 NA Intergenic L1M2|LINE|L1 -21318 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 3828 chr10 69630135 69630284 + 0 NA promoter-TSS (NM_145306) promoter-TSS (NM_145306) -38 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 C10orf35 - chromosome 10 open reading frame 35 protein-coding 15348 chr2 36650171 36650282 + 0 NA Intergenic Intergenic -46464 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT - vitrin protein-coding 7542 chr12 102564161 102564314 + 0 NA Intergenic MER39B|LTR|ERV1 -83592 NM_001111283 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 24439 chr6 35024682 35024831 + 0 NA intron (NM_015245, intron 11 of 23) intron (NM_015245, intron 11 of 23) 116654 NM_001261818 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 6159 chr11 118415840 118415944 + 0 NA intron (NR_046369, intron 3 of 3) intron (NR_046369, intron 3 of 3) 2923 NR_046369 100131626 Hs.721614 NR_046369 LOC100131626 - uncharacterized LOC100131626 ncRNA 16366 chr2 135531315 135531461 + 0 NA promoter-TSS (NM_001286568) promoter-TSS (NM_001286568) -67 NM_015361 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 17279 chr2 232286016 232286168 + 0 NA intron (NR_046477, intron 12 of 18) intron (NR_046477, intron 12 of 18) -92442 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 31097 chrX 135985323 135985427 + 0 NA promoter-TSS (NM_001177651) promoter-TSS (NM_001177651) -49 NM_001177651 10479 Hs.62185 NM_006359 ENSG00000198689 SLC9A6 MRSA|NHE6 solute carrier family 9 member A6 protein-coding 7390 chr12 89352451 89352598 + 0 NA 5' UTR (NM_001946, exon 1 of 3) 5' UTR (NM_001946, exon 1 of 3) 335 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 28972 chr9 20319698 20319802 + 0 NA Intergenic Intergenic 91488 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 991 chr1 61742421 61742586 + 0 NA promoter-TSS (NM_176877) promoter-TSS (NM_176877) 26 NM_176877 10207 Hs.478125 NM_005799 ENSG00000132849 PATJ Cipp|INADL|InaD-like|hINADL PATJ, crumbs cell polarity complex component protein-coding 30154 chr9 127721604 127721708 + 0 NA intron (NM_144965, intron 6 of 13) intron (NM_144965, intron 6 of 13) 5592 NM_144965 158248 Hs.642748 NM_144965 ENSG00000167094 TTC16 - tetratricopeptide repeat domain 16 protein-coding 25547 chr7 2170071 2170175 + 0 NA intron (NM_001013836, intron 10 of 18) intron (NM_001013836, intron 10 of 18) 62825 NM_003550 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 4773 chr11 7987140 7987329 + 0 NA promoter-TSS (NM_003754) promoter-TSS (NM_003754) -86 NM_003754 8665 Hs.516023 NM_003754 ENSG00000175390 EIF3F EIF3S5|eIF3-p47 eukaryotic translation initiation factor 3 subunit F protein-coding 9446 chr14 78203111 78203215 + 0 NA intron (NM_001330195, intron 1 of 20) intron (NM_001330195, intron 1 of 20) 32790 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 13095 chr17 79850690 79850841 + 0 NA Intergenic Intergenic -11351 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 21802 chr4 130563676 130563752 + 0 NA Intergenic Intergenic -792236 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LOC101927282 - uncharacterized LOC101927282 ncRNA 3535 chr10 32143442 32143546 + 0 NA Intergenic L2b|LINE|L2 -87051 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 2348 chr1 200542416 200542455 + 0 NA Intergenic Intergenic 76403 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MKS12 kinesin family member 14 protein-coding 12048 chr17 7579400 7579562 + 0 NA promoter-TSS (NM_001251) promoter-TSS (NM_001251) -6 NM_001251 968 Hs.647419 NM_001251 ENSG00000129226 CD68 GP110|LAMP4|SCARD1 CD68 molecule protein-coding 23211 chr5 132415159 132415263 + 0 NA intron (NR_045116, intron 1 of 3) intron (NR_045116, intron 1 of 3) 4438 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 30848 chrX 78092419 78092523 + 0 NA Intergenic L1M1|LINE|L1 -11698 NM_000291 5230 Hs.78771 NM_000291 ENSG00000102144 PGK1 HEL-S-68p|MIG10|PGKA phosphoglycerate kinase 1 protein-coding 25754 chr7 17207359 17207499 + 0 NA Intergenic Intergenic -91223 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 615 chr1 35769433 35769558 + 0 NA intron (NM_022111, intron 1 of 24) CpG 455 NM_001330490 63967 Hs.175613 NM_022111 ENSG00000092853 CLSPN - claspin protein-coding 13078 chr17 78736824 78736973 + 0 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) -13148 NM_001292018 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 14456 chr19 40444701 40444866 + 0 NA promoter-TSS (NM_203344) promoter-TSS (NM_203344) -408 NM_203344 29946 Hs.515412 NM_013368 ENSG00000167565 SERTAD3 RBT1 SERTA domain containing 3 protein-coding 24317 chr6 30326393 30326506 + 0 NA promoter-TSS (NM_021253) promoter-TSS (NM_021253) -315 NR_052012 414778 Hs.485041 NR_052012 ENSG00000270604 HCG17 HCG18|LINC00046|NCRNA00046 HLA complex group 17 (non-protein coding) ncRNA 476 chr1 28369610 28369764 + 0 NA 5' UTR (NM_001048183, exon 1 of 14) 5' UTR (NM_001048183, exon 1 of 14) 105 NM_001048183 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 26957 chr7 126574367 126574471 + 0 NA intron (NR_028041, intron 8 of 10) intron (NR_028041, intron 8 of 10) 483765 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 1198 chr1 84847330 84847475 + 0 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 45811 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 24825 chr6 79570573 79570723 + 0 NA Intergenic Intergenic -33218 NM_001122769 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 LCA5, lebercilin protein-coding 17468 chr20 2509121 2509254 + 0 NA promoter-TSS (NM_001321800) promoter-TSS (NM_001321800) -55 NM_024325 79175 Hs.516846 NM_024325 ENSG00000088876 ZNF343 dJ734P14.5 zinc finger protein 343 protein-coding 1626 chr1 144412599 144412708 + 0 NA promoter-TSS (NR_104076) promoter-TSS (NR_104076) 77 NR_104076 101954267 NR_104076 ENSG00000207205 RNVU1-15 RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16 RNA, variant U1 small nuclear 15 snRNA 29925 chr9 114398574 114398678 + 0 NA Intergenic CpG -4221 NM_030767 80709 Hs.494895 NM_030767 ENSG00000106948 AKNA - AT-hook transcription factor protein-coding 22960 chr5 103120150 103120315 + 0 NA promoter-TSS (NM_001281471) promoter-TSS (NM_001281471) -16 NM_001345877 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 25445 chr6 160991398 160991559 + 0 NA promoter-TSS (NM_001291958) promoter-TSS (NM_001291958) -249 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 23114 chr5 123430237 123430268 + 0 NA Intergenic Intergenic -6660 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|SRTD13 centrosomal protein 120 protein-coding 2141 chr1 179143029 179143133 + 0 NA promoter-TSS (NM_005158) promoter-TSS (NM_005158) 8 NM_005158 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 7566 chr12 104588770 104588874 + 0 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) -2811 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 8648 chr13 113490800 113490917 + 0 NA promoter-TSS (NM_001014283) promoter-TSS (NM_001014283) -135 NM_017905 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 11349 chr16 53055169 53055273 + 0 NA intron (NM_025134, intron 1 of 38) CpG 188 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 20831 chr3 184740548 184740652 + 0 NA Intergenic Intergenic -28552 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 - MAGE family member F1 protein-coding 13595 chr18 52312423 52312527 + 0 NA Intergenic Intergenic -27697 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 20682 chr3 175150939 175151015 + 0 NA intron (NM_207015, intron 2 of 13) MER102c|DNA|hAT-Charlie -35735 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 13797 chr18 76565366 76565470 + 0 NA Intergenic Intergenic 36763 NR_015417 284276 Hs.390287 NR_015417 ENSG00000263812 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 12474 chr17 40922442 40922571 + 0 NA TTS (NM_001282433) TTS (NM_001282433) 15137 NM_001282433 25984 Hs.9029 NM_015515 ENSG00000108244 KRT23 CK23|HAIK1|K23 keratin 23 protein-coding 14599 chr19 46731160 46731264 + 0 NA intron (NM_001039877, intron 5 of 17) MamRTE1|LINE|RTE-BovB -14085 NM_001079881 25865 Hs.466987 NM_016457 ENSG00000105287 PRKD2 HSPC187|PKD2|nPKC-D2 protein kinase D2 protein-coding 18716 chr22 25405317 25405421 + 0 NA Intergenic CpG -23792 NM_001135772 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 2854 chr1 226309256 226309360 + 0 NA 5' UTR (NM_173083, exon 1 of 15) 5' UTR (NM_173083, exon 1 of 15) 195 NM_001270409 286826 Hs.120817 NM_173083 ENSG00000183814 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 7140 chr12 56635030 56635134 + 0 NA intron (NM_013449, intron 1 of 28) CpG 1297 NM_013449 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 27665 chr8 33513045 33513262 + 0 NA promoter-TSS (NM_001102401) promoter-TSS (NM_001102401) 32 NM_001265581 80185 Hs.77135 NM_025115 ENSG00000129696 TTI2 C8orf41|MRT39 TELO2 interacting protein 2 protein-coding 26689 chr7 100015513 100015668 + 0 NA promoter-TSS (NM_001287055) promoter-TSS (NM_001287055) 38 NM_001287054 7586 Hs.615360 NM_003439 ENSG00000106261 ZKSCAN1 KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33 zinc finger with KRAB and SCAN domains 1 protein-coding 7506 chr12 99445117 99445221 + 0 NA intron (NM_152788, intron 10 of 25) intron (NM_152788, intron 10 of 25) -202581 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 18644 chr22 20268379 20268528 + 0 NA promoter-TSS (NM_023004) promoter-TSS (NM_023004) -160 NM_023004 65078 Hs.30868 NM_023004 ENSG00000040608 RTN4R NGR|NOGOR reticulon 4 receptor protein-coding 25289 chr6 146790814 146790918 + 0 NA intron (NM_024694, intron 33 of 35) L1MA7|LINE|L1 12958 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 17768 chr20 22922067 22922142 + 0 NA Intergenic Intergenic -113316 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 3046 chr1 237879369 237879473 + 0 NA intron (NR_027247, intron 3 of 11) intron (NR_027247, intron 3 of 11) 11501 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 7085 chr12 54201439 54201579 + 0 NA Intergenic Intergenic -12515 NR_045039 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 15712 chr2 67601027 67601131 + 0 NA Intergenic L2c|LINE|L2 203769 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 Ewing tumor associated antigen 1 protein-coding 22727 chr5 74316340 74316477 + 0 NA Intergenic Intergenic -6078 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 575 chr1 33060873 33061065 + 0 NA Intergenic Intergenic -20144 NM_052998 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 6761 chr12 26239624 26239728 + 0 NA Intergenic Intergenic 44103 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 8186 chr13 43058346 43058492 + 0 NA intron (NM_013238, intron 1 of 5) L1PB1|LINE|L1 35193 NM_013238 29103 Hs.438830 NM_013238 ENSG00000120675 DNAJC15 DNAJD1|HSD18|MCJ DnaJ heat shock protein family (Hsp40) member C15 protein-coding 1835 chr1 156096759 156096881 + 0 NA intron (NM_001282625, intron 3 of 12) intron (NM_001282625, intron 3 of 12) 14274 NM_001282625 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 28969 chr9 19994386 19994490 + 0 NA Intergenic Intergenic -207419 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 5523 chr11 66568589 66568693 + 0 NA promoter-TSS (NM_003793) promoter-TSS (NM_003793) -65 NM_003793 8722 Hs.11590 NM_003793 ENSG00000174080 CTSF CATSF|CLN13 cathepsin F protein-coding 6549 chr12 6970628 6970804 + 0 NA promoter-TSS (NM_001267700) promoter-TSS (NM_001267700) 37 NM_001267700 11331 Hs.504620 NM_001144831 ENSG00000215021 PHB2 BAP|BCAP37|Bap37|PNAS-141|REA|hBAP|p22 prohibitin 2 protein-coding 9912 chr15 40039129 40039298 + 0 NA promoter-TSS (NM_001309434) promoter-TSS (NM_001309434) -11 NM_001309434 6727 Hs.533732 NM_003134 ENSG00000140319 SRP14 ALURBP signal recognition particle 14 protein-coding 10809 chr15 100350183 100350355 + 0 NA promoter-TSS (NR_028140) promoter-TSS (NR_028140) -36 NR_028140 388182 Hs.136982 NM_207383 ENSG00000189419 SPATA41 HSD47 spermatogenesis associated 41 (non-protein coding) ncRNA 18866 chr22 37541971 37542075 + 0 NA Intergenic Intergenic -18441 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 23822 chr5 179698643 179698877 + 0 NA promoter-TSS (NM_001746) promoter-TSS (NM_001746) -169 NM_001024649 821 Hs.567968 NM_001746 ENSG00000127022 CANX CNX|IP90|P90 calnexin protein-coding 16438 chr2 148594351 148594499 + 0 NA Intergenic Intergenic -50566 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 6848 chr12 32897117 32897271 + 0 NA promoter-TSS (NM_004572) promoter-TSS (NM_004572) -348 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 11769 chr16 84504666 84504826 + 0 NA promoter-TSS (NM_020947) promoter-TSS (NM_020947) -64 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 TLDC1 KIAA1609 TBC/LysM-associated domain containing 1 protein-coding 24794 chr6 73654028 73654172 + 0 NA promoter-TSS (NM_012434) promoter-TSS (NM_012434) -86 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 7062 chr12 53372699 53372803 + 0 NA Intergenic Intergenic -7444 NM_138473 6667 Hs.620754 NM_003109 ENSG00000185591 SP1 - Sp1 transcription factor protein-coding 25947 chr7 28854294 28854436 + 0 NA Intergenic CpG 104048 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 12383 chr17 35880169 35880187 + 0 NA intron (NM_002985, intron 1 of 2) intron (NM_002985, intron 1 of 2) 195 NM_001278736 6352 Hs.514821 NM_002985 ENSG00000271503 CCL5 D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP C-C motif chemokine ligand 5 protein-coding 14325 chr19 29665315 29665507 + 0 NA promoter-TSS (NM_024310) promoter-TSS (NM_024310) -9 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 12582 chr17 45247579 45247662 + 0 NA promoter-TSS (NR_024434) promoter-TSS (NR_024434) -305 NR_110325 100133991 Hs.668927 NR_024434 ENSG00000267278 MAP3K14-AS1 - MAP3K14 antisense RNA 1 ncRNA 10741 chr15 93321876 93321980 + 0 NA Intergenic Intergenic -232714 NM_020211 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 27776 chr8 48008358 48008473 + 0 NA promoter-TSS (NM_003350) promoter-TSS (NM_003350) -20 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 23629 chr5 159773447 159773551 + 0 NA Intergenic CpG 97885 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 1038 chr1 65141546 65141643 + 0 NA Intergenic Intergenic -5955 NM_203464 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 22395 chr5 38382923 38383068 + 0 NA intron (NM_152403, intron 6 of 21) intron (NM_152403, intron 6 of 21) 20476 NR_102750 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 19936 chr3 115615080 115615146 + 0 NA Intergenic Intergenic -8191 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 14402 chr19 37371037 37371130 + 0 NA promoter-TSS (NM_032453) promoter-TSS (NM_032453) -74 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 1777 chr1 153977656 153977736 + 0 NA 5' UTR (NM_006694, exon 1 of 5) 5' UTR (NM_006694, exon 1 of 5) 279 NM_006694 10899 Hs.6396 NM_006694 ENSG00000143543 JTB HJTB|HSPC222|PAR|hJT jumping translocation breakpoint protein-coding 20922 chr3 189834143 189834255 + 0 NA intron (NM_001329964, intron 4 of 13) intron (NM_001329964, intron 4 of 13) 4277 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 10566 chr15 82198076 82198180 + 0 NA intron (NR_136410, intron 15 of 19) intron (NR_136410, intron 15 of 19) 64400 NM_001322845 79631 Hs.459114 NM_024580 ENSG00000140598 EFL1 EFTUD1|FAM42A|HsT19294|RIA1 elongation factor like GTPase 1 protein-coding 15361 chr2 37324799 37324830 + 0 NA Intergenic CpG -7735 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 25488 chr6 168677344 168677448 + 0 NA Intergenic LTR7C|LTR|ERV1 236245 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 20385 chr3 150345230 150345334 + 0 NA Intergenic Intergenic -21535 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 30861 chrX 82816694 82816798 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR -691515 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 10622 chr15 85858920 85858976 + 0 NA Intergenic Intergenic 33313 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 11208 chr16 30053125 30053139 + 0 NA promoter-TSS (NM_000034) promoter-TSS (NM_000034) 42 NM_000034 226 Hs.513490 NM_000034 ENSG00000149925 ALDOA ALDA|GSD12|HEL-S-87p aldolase, fructose-bisphosphate A protein-coding 13678 chr18 61322419 61322438 + 0 NA Intergenic Intergenic -11154 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 17376 chr2 239275380 239275420 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -30062 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 7165 chr12 57583444 57583541 + 0 NA intron (NM_004984, intron 28 of 28) intron (NM_004984, intron 28 of 28) -7667 NM_001146259 79837 Hs.745011 NM_024779 ENSG00000166908 PIP4K2C PIP5K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma protein-coding 12080 chr17 8295397 8295532 + 0 NA promoter-TSS (NM_001320871) promoter-TSS (NM_001320871) -121 NM_001320871 399512 Hs.118918 NM_201520 ENSG00000125434 SLC25A35 - solute carrier family 25 member 35 protein-coding 18986 chr22 43126923 43127074 + 0 NA intron (NM_001197, intron 2 of 4) intron (NM_001197, intron 2 of 4) 16250 NM_001197 638 Hs.475055 NM_001197 ENSG00000100290 BIK BIP1|BP4|NBK BCL2 interacting killer protein-coding 4225 chr10 101012985 101013099 + 0 NA intron (NM_001195263, intron 11 of 16) intron (NM_001195263, intron 11 of 16) 10545 NM_001318101 84445 Hs.523221 NM_032429 ENSG00000107816 LZTS2 LAPSER1 leucine zipper tumor suppressor 2 protein-coding 2734 chr1 220094439 220094527 + 0 NA exon (NM_018060, exon 1 of 23) exon (NM_018060, exon 1 of 23) 370 NM_018060 55699 Hs.262823 NM_018060 ENSG00000067704 IARS2 CAGSSS|ILERS isoleucyl-tRNA synthetase 2, mitochondrial protein-coding 10857 chr16 1379057 1379161 + 0 NA intron (NM_001193388, intron 10 of 14) CpG 574 NM_001276414 64718 Hs.643536 NM_023076 ENSG00000059145 UNKL C16orf28|ZC3H5L|ZC3HDC5L unkempt family like zinc finger protein-coding 3240 chr10 5889974 5889981 + 0 NA promoter-TSS (NM_001009941) promoter-TSS (NM_001009941) -80 NM_019046 54522 Hs.289828 NM_019046 ENSG00000134461 ANKRD16 - ankyrin repeat domain 16 protein-coding 29048 chr9 34049138 34049287 + 0 NA promoter-TSS (NM_001282529) promoter-TSS (NM_001282529) -263 NM_018449 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 25208 chr6 137978786 137978860 + 0 NA Intergenic Intergenic -110590 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 LOC100130476 - uncharacterized LOC100130476 ncRNA 22407 chr5 39100999 39101149 + 0 NA Intergenic LTR33|LTR|ERVL -26666 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 20481 chr3 156676045 156676149 + 0 NA promoter-TSS (NR_027954) promoter-TSS (NR_027954) -384 NR_027954 100287227 Hs.12813 NR_027954 TIPARP-AS1 - TIPARP antisense RNA 1 ncRNA 15614 chr2 60586221 60586325 + 0 NA Intergenic Intergenic -32775 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 26750 chr7 103113340 103113444 + 0 NA intron (NM_198990, intron 4 of 5) intron (NM_198990, intron 4 of 5) 29011 NR_026660 100129424 Hs.720729 NR_026660 RPL19P12 RPL19_4_829 ribosomal protein L19 pseudogene 12 pseudo 18224 chr20 51803347 51803432 + 0 NA promoter-TSS (NM_020436) promoter-TSS (NM_020436) -866 NM_001318031 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 27781 chr8 48407908 48408012 + 0 NA Intergenic Intergenic -143607 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 23355 chr5 140647613 140647800 + 0 NA promoter-TSS (NM_001185012) promoter-TSS (NM_001185012) 79 NM_001185012 4695 Hs.75914 NM_002488 ENSG00000131495 NDUFA2 B8|CD14|CIB8 NADH:ubiquinone oxidoreductase subunit A2 protein-coding 13821 chr18 79951661 79951814 + 0 NA promoter-TSS (NM_025078) promoter-TSS (NM_025078) -84 NM_001146343 80148 Hs.288284 NM_025078 ENSG00000122490 PQLC1 - PQ loop repeat containing 1 protein-coding 17864 chr20 32325949 32326103 + 0 NA intron (NM_004798, intron 5 of 8) intron (NM_004798, intron 5 of 8) -32318 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS additional sex combs like 1, transcriptional regulator protein-coding 22694 chr5 71455849 71455872 + 0 NA 5' UTR (NM_018429, exon 1 of 39) 5' UTR (NM_018429, exon 1 of 39) 245 NM_018429 55814 Hs.258272 NM_018429 ENSG00000145734 BDP1 HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein-coding 1850 chr1 156445900 156446004 + 0 NA Intergenic Intergenic -16404 NM_001320453 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 9588 chr14 93937594 93937755 + 0 NA intron (NM_001202429, intron 9 of 9) intron (NM_001202429, intron 9 of 9) 10289 NM_001207072 90050 Hs.525550 NM_138344 ENSG00000140067 FAM181A C14orf152 family with sequence similarity 181 member A protein-coding 10396 chr15 71337284 71337377 + 0 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -148271 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 1964 chr1 164184467 164184549 + 0 NA Intergenic LTR16C|LTR|ERVL -374852 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 27839 chr8 53732487 53732591 + 0 NA intron (NM_015941, intron 13 of 13) HERVE_a-int|LTR|ERV1 110503 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 24620 chr6 45477424 45477528 + 0 NA intron (NM_001015051, intron 5 of 7) L2c|LINE|L2 54899 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 3396 chr10 21533704 21533831 + 0 NA promoter-TSS (NR_136736) promoter-TSS (NR_136736) -405 NM_001195627 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 protein-coding 11756 chr16 83826232 83826382 + 0 NA Intergenic Intergenic 18404 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 4768 chr11 7657453 7657557 + 0 NA Intergenic Intergenic 15386 NM_001302827 51700 Hs.414362 NM_016229 ENSG00000166394 CYB5R2 B5R.2 cytochrome b5 reductase 2 protein-coding 8898 chr14 37081369 37081473 + 0 NA intron (NM_030631, intron 1 of 9) intron (NM_030631, intron 1 of 9) -90605 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 25864 chr7 23697076 23697205 + 0 NA intron (NM_001127365, intron 3 of 4) intron (NM_001127365, intron 3 of 4) -13027 NR_048542 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 19290 chr3 28348974 28349178 + 0 NA promoter-TSS (NM_001324169) promoter-TSS (NM_001324169) 51 NM_001134433 64343 Hs.706676 NM_022461 ENSG00000163512 AZI2 AZ2|NAP1|TILP 5-azacytidine induced 2 protein-coding 1013 chr1 63893241 63893345 + 0 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 119274 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 16223 chr2 120223055 120223193 + 0 NA 5' UTR (NM_024121, exon 1 of 1) 5' UTR (NM_024121, exon 1 of 1) 284 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 26730 chr7 101308267 101308390 + 0 NA promoter-TSS (NR_110115) promoter-TSS (NR_110115) 21 NR_110115 101927746 Hs.698373 NR_110115 LOC101927746 - uncharacterized LOC101927746 ncRNA 316 chr1 21149966 21150070 + 0 NA intron (NM_001198803, intron 1 of 12) intron (NM_001198803, intron 1 of 12) 18021 NM_001198803 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 16359 chr2 134918372 134918387 + 0 NA promoter-TSS (NM_001320748) promoter-TSS (NM_001320748) 227 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 4549 chr10 123994809 123994859 + 0 NA Intergenic Intergenic 97590 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 9392 chr14 75294093 75294272 + 0 NA promoter-TSS (NR_038421) promoter-TSS (NR_038421) -222 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 15817 chr2 74120217 74120370 + 0 NA Intergenic CpG 27619 NM_212552 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 21860 chr4 145098189 145098310 + 0 NA promoter-TSS (NM_014885) promoter-TSS (NM_014885) -30 NM_001256710 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 20187 chr3 134008697 134008777 + 0 NA intron (NM_005630, intron 1 of 13) intron (NM_005630, intron 1 of 13) 21339 NM_005630 6578 Hs.518270 NM_005630 ENSG00000174640 SLCO2A1 MATR1|OATP2A1|PGT|PHOAR2|SLC21A2 solute carrier organic anion transporter family member 2A1 protein-coding 17575 chr20 10415368 10415472 + 0 NA intron (NM_170784, intron 2 of 5) intron (NM_170784, intron 2 of 5) 16505 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 21062 chr3 196867813 196867941 + 0 NA promoter-TSS (NM_001308045) promoter-TSS (NM_001308045) 21 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO1/sentrin specific peptidase 5 protein-coding 14174 chr19 13952278 13952393 + 0 NA promoter-TSS (NM_138353) promoter-TSS (NM_138353) -139 NM_138353 90379 Hs.443636 NM_138353 ENSG00000132017 DCAF15 C19orf72 DDB1 and CUL4 associated factor 15 protein-coding 7256 chr12 71686381 71686385 + 0 NA 5' UTR (NM_018279, exon 1 of 6) 5' UTR (NM_018279, exon 1 of 6) 285 NM_018279 55266 Hs.644802 NM_018279 ENSG00000139291 TMEM19 - transmembrane protein 19 protein-coding 2649 chr1 213015781 213015895 + 0 NA promoter-TSS (NM_001300755) promoter-TSS (NM_001300755) 37 NM_144567 90806 Hs.157078 NM_144567 ENSG00000174606 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 protein-coding 12396 chr17 36921626 36921821 + 0 NA intron (NR_135670, intron 1 of 1).2 MIRb|SINE|MIR 14938 NR_135671 102723471 Hs.567930 NR_135668 ENSG00000277268 LOC102723471 - uncharacterized LOC102723471 ncRNA 31072 chrX 132940817 132940888 + 0 NA intron (NM_001077188, intron 3 of 5) intron (NM_001077188, intron 3 of 5) 20543 NM_001077188 90161 Hs.385956 NM_147175 ENSG00000171004 HS6ST2 - heparan sulfate 6-O-sulfotransferase 2 protein-coding 12376 chr17 35578601 35578726 + 0 NA promoter-TSS (NM_000286) promoter-TSS (NM_000286) -26 NM_000286 5193 Hs.591190 NM_000286 ENSG00000108733 PEX12 PAF-3|PBD3A peroxisomal biogenesis factor 12 protein-coding 20729 chr3 178942399 178942503 + 0 NA Intergenic L1MA7|LINE|L1 -82046 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 9829 chr15 32615477 32615581 + 0 NA promoter-TSS (NM_001039841).2 promoter-TSS (NM_001039841).2 53 NM_199357 9824 Hs.591130 NM_014783 ENSG00000198826 ARHGAP11A GAP (1-12) Rho GTPase activating protein 11A protein-coding 22231 chr5 13566968 13567132 + 0 NA Intergenic Intergenic 377430 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 19087 chr3 4826038 4826117 + 0 NA intron (NM_002222, intron 56 of 57) intron (NM_002222, intron 56 of 57) -74487 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 15221 chr2 27050872 27050945 + 0 NA promoter-TSS (NR_046730) promoter-TSS (NR_046730) -515 NR_138023 60509 Hs.138207 NM_021831 ENSG00000084693 AGBL5 CCP5|RP75 ATP/GTP binding protein like 5 protein-coding 29032 chr9 33161115 33161201 + 0 NA intron (NM_001497, intron 1 of 5) intron (NM_001497, intron 1 of 5) -5790 NR_108110 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 23553 chr5 151771522 151771550 + 0 NA promoter-TSS (NR_132346) promoter-TSS (NR_132346) -28 NR_132346 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 3443 chr10 24552422 24552573 + 0 NA Intergenic Intergenic 85992 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 3259 chr10 6737245 6737349 + 0 NA promoter-TSS (NR_138480) promoter-TSS (NR_138480) -85 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in nonhomologous end joining pathway 1 ncRNA 3573 chr10 34973896 34974008 + 0 NA Intergenic HERVE-int|LTR|ERV1 100378 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 2437 chr1 203650455 203650608 + 0 NA intron (NM_001684, intron 1 of 20) intron (NM_001684, intron 1 of 20) 23744 NM_001684 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 17702 chr20 18467022 18467182 + 0 NA promoter-TSS (NM_001099407) promoter-TSS (NM_001099407) 83 NM_001099407 55184 Hs.472225 NM_018152 ENSG00000089091 DZANK1 ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2 double zinc ribbon and ankyrin repeat domains 1 protein-coding 18126 chr20 47191249 47191353 + 0 NA Intergenic L2b|LINE|L2 24334 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 10731 chr15 92906828 92906958 + 0 NA intron (NM_001042572, intron 2 of 12) intron (NM_001042572, intron 2 of 12) 2494 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA 3131 chr1 246139835 246139940 + 0 NA intron (NM_001167740, intron 5 of 11) Tigger19a|DNA|TcMar-Tigger 277525 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 20523 chr3 159164216 159164347 + 0 NA intron (NM_001197100, intron 1 of 3) intron (NM_001197100, intron 1 of 3) 95029 NM_001197100 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 24680 chr6 51679264 51679368 + 0 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 57446 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 13081 chr17 78883481 78883585 + 0 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 19684 NM_001243540 100653515 Hs.734636 NM_001243540 ENSG00000178404 CEP295NL DDC8|KIAA1731NL CEP295 N-terminal like protein-coding 6899 chr12 43339033 43339142 + 0 NA Intergenic Intergenic 212834 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 28525 chr8 120347032 120347136 + 0 NA intron (NM_021110, intron 45 of 47) intron (NM_021110, intron 45 of 47) -98314 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 6263 chr11 124644482 124644568 + 0 NA intron (NM_170601, intron 7 of 9) intron (NM_170601, intron 7 of 9) 8027 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 23864 chr6 1325694 1325859 + 0 NA Intergenic MamTip2|DNA|hAT-Tip100 13336 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 16745 chr2 179460677 179460781 + 0 NA intron (NM_001113397, intron 4 of 7) LTR8B|LTR|ERV1 101859 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 5437 chr11 64335184 64335338 + 0 NA Intergenic Intergenic -4957 NM_032251 283234 Hs.98564 NM_032251 ENSG00000168071 CCDC88B BRLZ|CCDC88|HKRP3|gipie coiled-coil domain containing 88B protein-coding 28012 chr8 71831421 71831525 + 0 NA Intergenic Intergenic -11650 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 26115 chr7 41148612 41148716 + 0 NA Intergenic Intergenic 47060 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 7188 chr12 59067175 59067279 + 0 NA Intergenic Intergenic -146689 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 22192 chr5 8906729 8906834 + 0 NA Intergenic Intergenic 67049 NR_109932 101929284 Hs.403715 NR_109932 LOC101929284 - uncharacterized LOC101929284 ncRNA 30350 chr9 136108476 136108630 + 0 NA Intergenic Intergenic 9878 NM_001256526 90120 Hs.287411 NM_152833 ENSG00000238227 C9orf69 - chromosome 9 open reading frame 69 protein-coding 13362 chr18 27789541 27789707 + 0 NA Intergenic Intergenic 246961 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 26129 chr7 42070118 42070274 + 0 NA intron (NM_000168, intron 4 of 14) intron (NM_000168, intron 4 of 14) 166823 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 19724 chr3 98376749 98376890 + 0 NA Intergenic LTR16|LTR|ERVL -13847 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 795 chr1 45303545 45303667 + 0 NA promoter-TSS (NR_024270) promoter-TSS (NR_024270) -304 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 15969 chr2 96305506 96305606 + 0 NA promoter-TSS (NM_014014) promoter-TSS (NM_014014) 13 NM_014014 23020 Hs.246112 NM_014014 ENSG00000144028 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein U5 subunit 200 protein-coding 19906 chr3 113515134 113515276 + 0 NA promoter-TSS (NM_144718) promoter-TSS (NM_144718) -18 NM_144718 152185 Hs.477144 NM_144718 ENSG00000163611 SPICE1 CCDC52|SPICE spindle and centriole associated protein 1 protein-coding 15838 chr2 74712827 74712931 + 0 NA Intergenic Intergenic 58651 NR_073398 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 944 chr1 58727481 58727622 + 0 NA Intergenic Intergenic -27476 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB Myb like, SWIRM and MPN domains 1 protein-coding 1113 chr1 70411052 70411156 + 0 NA promoter-TSS (NM_001190463) promoter-TSS (NM_001190463) -114 NM_001190463 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 27934 chr8 62435290 62435357 + 0 NA intron (NR_130764, intron 1 of 6) intron (NR_130764, intron 1 of 6) 186381 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D Sodium/potassium transporting ATPase interacting 3 protein-coding 21390 chr4 55948160 55948264 + 0 NA promoter-TSS (NM_025009) promoter-TSS (NM_025009) -596 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 3405 chr10 22316639 22316677 + 0 NA intron (NM_012071, intron 1 of 7) CpG 275 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 - COMMD3-BMI1 readthrough protein-coding 17322 chr2 235493924 235493946 + 0 NA promoter-TSS (NM_014914) promoter-TSS (NM_014914) -154 NM_001037131 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 15399 chr2 39492252 39492334 + 0 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 54877 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 LOC728730 - uncharacterized LOC728730 ncRNA 26301 chr7 54996063 54996197 + 0 NA Intergenic L2|LINE|L2 -22891 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 16506 chr2 157327644 157327774 + 0 NA promoter-TSS (NM_001304344) promoter-TSS (NM_001304344) 4 NM_001009959 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 957 chr1 59143183 59143282 + 0 NA intron (NR_027120, intron 1 of 2) intron (NR_027120, intron 1 of 2) 3575 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 30872 chrX 97617244 97617358 + 0 NA Intergenic Intergenic -52766 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 11476 chr16 66522254 66522377 + 0 NA intron (NM_001172643, intron 6 of 9) intron (NM_001172643, intron 6 of 9) 27510 NM_001272050 7084 Hs.512619 NM_004614 ENSG00000166548 TK2 MTDPS2|MTTK|PEOB3|SCA31 thymidine kinase 2, mitochondrial protein-coding 13502 chr18 46098135 46098277 + 0 NA exon (NM_001257334, exon 1 of 12) exon (NM_001257334, exon 1 of 12) 147 NM_001257335 498 Hs.298280 NM_004046 ENSG00000152234 ATP5A1 ATP5A|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MOM2|OMR|ORM|hATP1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle protein-coding 3996 chr10 80699654 80699781 + 0 NA Intergenic Intergenic 158898 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 23610 chr5 157995016 157995151 + 0 NA Intergenic Intergenic -135908 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 17637 chr20 13221697 13221847 + 0 NA promoter-TSS (NM_080826) promoter-TSS (NM_080826) 1 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 30171 chr9 128128391 128128467 + 0 NA promoter-TSS (NM_001256335) promoter-TSS (NM_001256335) 33 NM_025072 80142 Hs.495219 NM_025072 ENSG00000148334 PTGES2 C9orf15|GBF-1|GBF1|PGES2|mPGES-2 prostaglandin E synthase 2 protein-coding 5185 chr11 37504205 37504309 + 0 NA Intergenic Intergenic -434344 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 20266 chr3 139435008 139435164 + 0 NA intron (NR_121609, intron 3 of 4) intron (NR_121609, intron 3 of 4) 41424 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 18041 chr20 43192084 43192188 + 0 NA Intergenic L2c|LINE|L2 -2219 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase, receptor type T protein-coding 13473 chr18 44090627 44090731 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 441018 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 10216 chr15 60091306 60091465 + 0 NA Intergenic Intergenic 87163 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 25118 chr6 125956793 125956814 + 0 NA promoter-TSS (NM_138571) promoter-TSS (NM_138571) 88 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 27804 chr8 50183689 50183793 + 0 NA intron (NM_001321778, intron 2 of 16) L2|LINE|L2 19610 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 13121 chr17 81239046 81239265 + 0 NA promoter-TSS (NM_144679) promoter-TSS (NM_144679) -64 NM_144679 146705 Hs.631761 NM_144679 ENSG00000167302 TEPSIN C17orf56|ENTHD2 TEPSIN, adaptor related protein complex 4 accessory protein protein-coding 8465 chr13 97194519 97194671 + 0 NA Intergenic MER41B|LTR|ERV1 -14973 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 20109 chr3 128725960 128726184 + 0 NA promoter-TSS (NM_004637) promoter-TSS (NM_004637) -64 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 314 chr1 20786689 20786856 + 0 NA promoter-TSS (NM_016287) promoter-TSS (NM_016287) -84 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 3385 chr10 21366109 21366213 + 0 NA Intergenic AluJo|SINE|Alu 130480 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 2998 chr1 234925897 234926080 + 0 NA Intergenic Intergenic 38011 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 6248 chr11 122861762 122861915 + 0 NA promoter-TSS (NM_001304782) promoter-TSS (NM_001304782) -473 NM_001304782 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T-cell molecule protein-coding 30023 chr9 120868660 120868771 + 0 NA TTS (NM_001009936) TTS (NM_001009936) 196 NR_104601 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding 13151 chr17 82023080 82023184 + 0 NA promoter-TSS (NM_001271006) promoter-TSS (NM_001271006) -170 NM_144999 201255 Hs.143774 NM_144999 ENSG00000169683 LRRC45 - leucine rich repeat containing 45 protein-coding 14922 chr2 3379604 3379777 + 0 NA promoter-TSS (NM_016030) promoter-TSS (NM_016030) 15 NM_016030 51112 Hs.252713 NM_016030 ENSG00000171853 TRAPPC12 CGI-87|TTC-15|TTC15 trafficking protein particle complex 12 protein-coding 20499 chr3 157175120 157175150 + 0 NA Intergenic CpG -14375 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 19642 chr3 69052310 69052456 + 0 NA promoter-TSS (NM_007114) promoter-TSS (NM_007114) -50 NM_007114 7110 Hs.267632 NM_007114 ENSG00000144747 TMF1 ARA160|TMF TATA element modulatory factor 1 protein-coding 24767 chr6 70398997 70399151 + 0 NA intron (NR_125857, intron 3 of 3) intron (NR_125857, intron 3 of 3) 4872 NR_125857 101928353 NR_125857 EVADR - uncharacterized LOC101928353 ncRNA 2058 chr1 169894239 169894257 + 0 NA promoter-TSS (NM_020423) promoter-TSS (NM_020423) -289 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 25076 chr6 120212187 120212200 + 0 NA Intergenic LTR16C|LTR|ERVL 197014 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 18736 chr22 27475041 27475210 + 0 NA Intergenic Intergenic 164474 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LOC100507657 - uncharacterized LOC100507657 ncRNA 26444 chr7 76087448 76087589 + 0 NA Intergenic U6|snRNA|snRNA 21244 NR_135079 101927126 Hs.632320 NR_135079 GTF2IP7 - general transcription factor IIi pseudogene 7 pseudo 5859 chr11 93784147 93784300 + 0 NA promoter-TSS (NM_004268) promoter-TSS (NM_004268) -16 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|TRAP80 mediator complex subunit 17 protein-coding 11457 chr16 62225908 62226012 + 0 NA Intergenic MER66C|LTR|ERV1 -189125 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 16056 chr2 102615968 102616092 + 0 NA Intergenic Intergenic -3504 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 5534 chr11 66768035 66768144 + 0 NA intron (NM_001302084, intron 2 of 14) AluJb|SINE|Alu 23353 NM_024650 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 24151 chr6 19415699 19415827 + 0 NA Intergenic L1MB7|LINE|L1 -34058 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 7372 chr12 87704559 87704663 + 0 NA Intergenic LTR22C2|LTR|ERVK 80100 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 5317 chr11 59680686 59680787 + 0 NA Intergenic L1MA6|LINE|L1 -11698 NM_152716 219988 Hs.591960 NM_152716 ENSG00000166889 PATL1 Pat1b|hPat1b PAT1 homolog 1, processing body mRNA decay factor protein-coding 28992 chr9 22238055 22238159 + 0 NA Intergenic Intergenic -208734 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 25700 chr7 12941665 12941808 + 0 NA Intergenic Intergenic 254450 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 21777 chr4 125389886 125389931 + 0 NA intron (NM_024582, intron 1 of 16) intron (NM_024582, intron 1 of 16) 73496 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 22866 chr5 90474838 90474853 + 0 NA promoter-TSS (NM_203406) promoter-TSS (NM_203406) -19 NM_006467 10622 Hs.282387 NM_006467 ENSG00000113356 POLR3G RPC32|RPC7 RNA polymerase III subunit G protein-coding 19020 chr22 46085852 46085912 + 0 NA promoter-TSS (NR_027033) promoter-TSS (NR_027033) -115 NR_027033 400931 Hs.235838 NM_207477 ENSG00000197182 MIRLET7BHG linc-Ppara MIRLET7B host gene ncRNA 11830 chr16 88315831 88315906 + 0 NA Intergenic Intergenic -111603 NM_001127464 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 2828 chr1 225475201 225475305 + 0 NA Intergenic CpG -46398 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 19773 chr3 101676329 101676439 + 0 NA promoter-TSS (NR_024407) promoter-TSS (NR_024407) -46 NR_024407 100009676 Hs.743292 NR_024407 ENSG00000256628 ZBTB11-AS1 - ZBTB11 antisense RNA 1 ncRNA 24939 chr6 99178327 99178431 + 0 NA Intergenic MER4D1|LTR|ERV1 53770 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 31150 chrX 151082532 151082620 + 0 NA Intergenic CpG -85646 NR_036256 100422930 NR_036256 ENSG00000265789 MIR4330 - microRNA 4330 ncRNA 28964 chr9 19408938 19408996 + 0 NA promoter-TSS (NM_001010887) promoter-TSS (NM_001010887) 40 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 1960 chr1 162913465 162913697 + 0 NA Intergenic L1M4|LINE|L1 -44766 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 22753 chr5 76806328 76806357 + 0 NA Intergenic Intergenic -12635 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 20104 chr3 128487937 128488041 + 0 NA promoter-TSS (NM_001145662) promoter-TSS (NM_001145662) -68 NM_001145662 2624 Hs.367725 NM_032638 ENSG00000179348 GATA2 DCML|IMD21|MONOMAC|NFE1B GATA binding protein 2 protein-coding 28536 chr8 121261051 121261155 + 0 NA Intergenic Intergenic -378243 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 16906 chr2 200509966 200510168 + 0 NA promoter-TSS (NM_001321547) promoter-TSS (NM_001321547) 27 NM_001321548 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 1206 chr1 85276606 85276733 + 0 NA non-coding (NR_045484, exon 1 of 2) non-coding (NR_045484, exon 1 of 2) 235 NM_003921 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 4753 chr11 6619400 6619553 + 0 NA promoter-TSS (NM_000391) promoter-TSS (NM_000391) -15 NM_000391 1200 Hs.523454 NM_000391 ENSG00000166340 TPP1 CLN2|GIG1|LPIC|SCAR7|TPP-1 tripeptidyl peptidase 1 protein-coding 11432 chr16 57735580 57735684 + 0 NA promoter-TSS (NM_005886) promoter-TSS (NM_005886) -116 NM_005886 10300 Hs.275675 NM_005886 ENSG00000140854 KATNB1 KAT|LIS6 katanin regulatory subunit B1 protein-coding 11009 chr16 10877211 10877315 + 0 NA promoter-TSS (NM_001286403) promoter-TSS (NM_001286403) 65 NM_001286403 4261 Hs.592051 NM_000246 ENSG00000179583 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II major histocompatibility complex transactivator protein-coding 27975 chr8 66870645 66870749 + 0 NA promoter-TSS (NM_001136161) promoter-TSS (NM_001136161) -52 NM_173518 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 30385 chr9 137302232 137302380 + 0 NA promoter-TSS (NM_001004354) promoter-TSS (NM_001004354) -55 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 26812 chr7 109964889 109964993 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -4728 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 19080 chr3 4438427 4438531 + 0 NA intron (NM_001164674, intron 2 of 7) MER31B|LTR|ERV1 28803 NM_001164674 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 12589 chr17 45425727 45425881 + 0 NA promoter-TSS (NM_199282) promoter-TSS (NM_199282) -158 NM_199282 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 26823 chr7 111562000 111562109 + 0 NA 5' UTR (NM_032549, exon 1 of 6) 5' UTR (NM_032549, exon 1 of 6) 237 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 1953 chr1 162539248 162539352 + 0 NA Intergenic Intergenic -22140 NM_001324116 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 23174 chr5 129767996 129768100 + 0 NA Intergenic Intergenic 19857 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 KIAA1024L - KIAA1024 like protein-coding 13096 chr17 79916201 79916303 + 0 NA non-coding (NR_110850, exon 5 of 6) non-coding (NR_110850, exon 5 of 6) -3105 NR_110851 101928738 Hs.399280 NR_110851 ENSG00000262188 LINC01978 - long intergenic non-protein coding RNA 1978 ncRNA 4823 chr11 10858090 10858285 + 0 NA promoter-TSS (NM_001143667) promoter-TSS (NM_001143667) -30 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 1222 chr1 85708517 85708541 + 0 NA promoter-TSS (NM_001170670) promoter-TSS (NM_001170670) -96 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 24524 chr6 40962361 40962489 + 0 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 60855 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 21762 chr4 121870427 121870531 + 0 NA promoter-TSS (NM_018190) promoter-TSS (NM_018190) 18 NM_176824 55212 Hs.591694 NM_018190 ENSG00000138686 BBS7 BBS2L1 Bardet-Biedl syndrome 7 protein-coding 11954 chr17 4366514 4366655 + 0 NA promoter-TSS (NM_003342) promoter-TSS (NM_003342) 90 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 9854 chr15 34338051 34338193 + 0 NA promoter-TSS (NM_001042496) promoter-TSS (NM_001042496) -58 NM_001042495 9990 Hs.510939 NM_005135 ENSG00000140199 SLC12A6 ACCPN|KCC3|KCC3A|KCC3B solute carrier family 12 member 6 protein-coding 13336 chr18 23994696 23994800 + 0 NA intron (NR_110796, intron 5 of 5) (AGC)n|Simple_repeat|Simple_repeat 1975 NM_153211 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 30682 chrX 48521633 48521796 + 0 NA promoter-TSS (NM_006579) promoter-TSS (NM_006579) -62 NM_006579 10682 Hs.30619 NM_006579 ENSG00000147155 EBP CDPX2|CHO2|CPX|CPXD|MEND emopamil binding protein (sterol isomerase) protein-coding 24378 chr6 31806879 31807033 + 0 NA promoter-TSS (NM_021177) promoter-TSS (NM_021177) 28 NM_021177 57819 Hs.103106 NM_021177 ENSG00000204392 LSM2 C6orf28|G7B|YBL026W|snRNP LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 9740 chr14 104752944 104753093 + 0 NA promoter-TSS (NM_006427) promoter-TSS (NM_006427) -115 NM_006427 10572 Hs.112058 NM_006427 ENSG00000184990 SIVA1 CD27BP|SIVA|Siva-1|Siva-2 SIVA1 apoptosis inducing factor protein-coding 13923 chr19 3155120 3155237 + 0 NA promoter-TSS (NR_110670) promoter-TSS (NR_110670) -3 NR_110670 100996351 NR_110670 ENSG00000267551 LOC100996351 - uncharacterized LOC100996351 ncRNA 422 chr1 26500289 26500375 + 0 NA Intergenic CpG 27921 NM_005517 3151 Hs.181163 NM_005517 ENSG00000198830 HMGN2 HMG17 high mobility group nucleosomal binding domain 2 protein-coding 12936 chr17 71976085 71976189 + 0 NA Intergenic Intergenic 49842 NR_110876 102723505 Hs.547482 NR_110876 ENSG00000228639 LINC02095 - long intergenic non-protein coding RNA 2095 ncRNA 16759 chr2 181106977 181107081 + 0 NA Intergenic Intergenic -16808 NR_130784 101927156 Hs.580074 NR_130784 ENSG00000234663 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 905 chr1 54542495 54542621 + 0 NA Intergenic CpG -5576 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 3308 chr10 13866292 13866396 + 0 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 106025 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 20793 chr3 183266112 183266255 + 0 NA intron (NM_032047, intron 1 of 1) intron (NM_032047, intron 1 of 1) 12939 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 12573 chr17 45093027 45093167 + 0 NA intron (NM_021079, intron 3 of 11) intron (NM_021079, intron 3 of 11) 21336 NR_106842 102465470 NR_106842 ENSG00000277249 MIR6784 hsa-mir-6784 microRNA 6784 ncRNA 13968 chr19 4912005 4912162 + 0 NA intron (NM_013282, intron 1 of 15) intron (NM_013282, intron 1 of 15) 1716 NM_001290052 29128 Hs.108106 NM_013282 ENSG00000276043 UHRF1 ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95 ubiquitin like with PHD and ring finger domains 1 protein-coding 9093 chr14 58171230 58171352 + 0 NA Intergenic Intergenic -19052 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 C14orf37 UT2|c14_5376 chromosome 14 open reading frame 37 protein-coding 23608 chr5 157948883 157949006 + 0 NA Intergenic Intergenic -89769 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 28999 chr9 26172407 26172511 + 0 NA Intergenic Intergenic 105784 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 27037 chr7 133633188 133633292 + 0 NA intron (NM_021807, intron 10 of 17) L1M5|LINE|L1 191648 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 1451 chr1 108561116 108561251 + 0 NA intron (NM_001010883, intron 1 of 10) intron (NM_001010883, intron 1 of 10) 834 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 13963 chr19 4813085 4813124 + 0 NA Intergenic Intergenic 18638 NM_182919 148022 Hs.29344 NM_014261 ENSG00000127666 TICAM1 IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF toll like receptor adaptor molecule 1 protein-coding 26334 chr7 64903089 64903236 + 0 NA promoter-TSS (NM_021148) promoter-TSS (NM_021148) -80 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 23427 chr5 145835335 145835519 + 0 NA promoter-TSS (NM_138492) promoter-TSS (NM_138492) -58 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 2452 chr1 204162583 204162801 + 0 NA intron (NM_000537, intron 1 of 9) intron (NM_000537, intron 1 of 9) 3645 NM_000537 5972 Hs.3210 NM_000537 ENSG00000143839 REN HNFJ2 renin protein-coding 9839 chr15 33132746 33132900 + 0 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 61910 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 24652 chr6 47478105 47478139 + 0 NA 5' UTR (NM_012120, exon 1 of 18) 5' UTR (NM_012120, exon 1 of 18) 333 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 11935 chr17 2975503 2975654 + 0 NA intron (NM_001330058, intron 8 of 24) LTR79|LTR|ERVL -9683 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 22504 chr5 52725486 52725656 + 0 NA Intergenic Intergenic -62369 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 10067 chr15 50145465 50145569 + 0 NA Intergenic Intergenic -26295 NM_024837 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 17362 chr2 238267435 238267551 + 0 NA intron (NM_022817, intron 8 of 22) intron (NM_022817, intron 8 of 22) 21073 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 21018 chr3 194578255 194578322 + 0 NA Intergenic Intergenic -5980 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 29452 chr9 86947859 86947963 + 0 NA promoter-TSS (NR_049794) promoter-TSS (NR_049794) -722 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 21713 chr4 113355804 113355908 + 0 NA exon (NM_001148, exon 38 of 46) exon (NM_001148, exon 38 of 46) 203574 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 3152 chr1 247390232 247390405 + 0 NA Intergenic Intergenic -25838 NM_001127461 114548 Hs.159483 NM_004895 ENSG00000162711 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|FCAS|FCAS1|FCU|MWS|NALP3|PYPAF1 NLR family pyrin domain containing 3 protein-coding 6000 chr11 105936020 105936124 + 0 NA intron (NM_000829, intron 14 of 16) intron (NM_000829, intron 14 of 16) 86215 NM_001318750 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 3366 chr10 18610636 18610693 + 0 NA intron (NM_182543, intron 5 of 10) intron (NM_182543, intron 5 of 10) 40973 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase family member 6 protein-coding 21167 chr4 9152991 9153134 + 0 NA Intergenic CpG -57595 NM_001256852 100287144 Hs.741130 NM_001256852 ENSG00000231396 USP17L10 - ubiquitin specific peptidase 17-like family member 10 protein-coding 17383 chr2 240205517 240205621 + 0 NA Intergenic Intergenic -64913 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 15359 chr2 37231588 37231630 + 0 NA promoter-TSS (NM_144736) promoter-TSS (NM_144736) -12 NM_005760 10153 Hs.135406 NM_005760 ENSG00000115816 CEBPZ CBF|CBF2|HSP-CBF|NOC1 CCAAT/enhancer binding protein zeta protein-coding 26655 chr7 98086316 98086443 + 0 NA Intergenic Intergenic -20506 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 13251 chr18 9102645 9102736 + 0 NA promoter-TSS (NM_021074) promoter-TSS (NM_021074) 60 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 15350 chr2 36707125 36707229 + 0 NA intron (NM_053276, intron 1 of 15) intron (NM_053276, intron 1 of 15) 10487 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT - vitrin protein-coding 3184 chr10 2985831 2985994 + 0 NA Intergenic MIRb|SINE|MIR -81608 NM_002627 5214 Hs.26010 NM_002627 ENSG00000067057 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 24302 chr6 29753154 29753175 + 0 NA Intergenic CpG -2016 NR_001590 340198 Hs.450189 NR_001590 ENSG00000235821 IFITM4P dJ377H14.5 interferon induced transmembrane protein 4 pseudogene pseudo 1726 chr1 151973050 151973195 + 0 NA Intergenic Intergenic 21116 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 10695 chr15 90352155 90352256 + 0 NA promoter-TSS (NM_001004309) promoter-TSS (NM_001004309) -40 NM_001004309 342132 Hs.55307 NM_001004309 ENSG00000196391 ZNF774 - zinc finger protein 774 protein-coding 14789 chr19 55006188 55006342 + 0 NA Intergenic Intergenic 31999 NM_016363 51206 Hs.661752 NM_016363 ENSG00000088053 GP6 BDPLT11|GPIV|GPVI glycoprotein VI platelet protein-coding 16408 chr2 142974504 142974655 + 0 NA intron (NM_001199241, intron 9 of 14) intron (NM_001199241, intron 9 of 14) 96953 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 7061 chr12 53371308 53371412 + 0 NA Intergenic Intergenic -8835 NM_138473 6667 Hs.620754 NM_003109 ENSG00000185591 SP1 - Sp1 transcription factor protein-coding 13989 chr19 5968207 5968282 + 0 NA intron (NM_007322, intron 1 of 16) intron (NM_007322, intron 1 of 16) 10065 NM_001300865 8498 Hs.531752 NM_003624 ENSG00000031823 RANBP3 - RAN binding protein 3 protein-coding 25389 chr6 156687330 156687434 + 0 NA Intergenic CpG -90473 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 8573 chr13 107020570 107020603 + 0 NA Intergenic LTR54|LTR|ERV1 366706 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 23832 chr5 179914171 179914323 + 0 NA Intergenic Intergenic -6391 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 21128 chr4 3292726 3292875 + 0 NA Intergenic CpG -21347 NM_198229 6002 Hs.527061 NM_002926 ENSG00000159788 RGS12 - regulator of G-protein signaling 12 protein-coding 9328 chr14 71803644 71803748 + 0 NA Intergenic Intergenic -128404 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G-protein signaling 6 protein-coding 7008 chr12 51238720 51238872 + 0 NA promoter-TSS (NM_001136266) promoter-TSS (NM_001136266) 72 NM_001136267 9802 Hs.369761 NM_014764 ENSG00000183283 DAZAP2 PRTB DAZ associated protein 2 protein-coding 21071 chr3 197376159 197376299 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -76957 NM_001290983 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs large MAGUK scaffold protein 1 protein-coding 6132 chr11 116853680 116853784 + 0 NA intron (NM_025164, intron 20 of 23) intron (NM_025164, intron 20 of 23) -15782 NM_001318021 335 Hs.93194 NM_000039 ENSG00000118137 APOA1 apo(a) apolipoprotein A1 protein-coding 12533 chr17 43125451 43125590 + 0 NA promoter-TSS (NR_027676) promoter-TSS (NR_027676) -37 NM_007294 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1, DNA repair associated protein-coding 21078 chr3 197516586 197516724 + 0 NA intron (NM_203315, intron 5 of 6) intron (NM_203315, intron 5 of 6) 39332 NM_004051 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 16065 chr2 105398986 105399102 + 0 NA promoter-TSS (NM_001318896) promoter-TSS (NM_001318896) 74 NM_001039492 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 28605 chr8 125664511 125664640 + 0 NA Intergenic Intergenic 232366 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 5052 chr11 27699123 27699183 + 0 NA TTS (NR_033312) TTS (NR_033312) 514 NM_170734 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 5430 chr11 64276763 64276901 + 0 NA intron (NM_004322, intron 1 of 2) intron (NM_004322, intron 1 of 2) -7507 NM_001170726 56834 Hs.523763 NM_020155 ENSG00000173264 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding 16135 chr2 111887928 111888059 + 0 NA Intergenic Intergenic -3829 NM_022662 64682 Hs.436527 NM_022662 ENSG00000153107 ANAPC1 APC1|MCPR|TSG24 anaphase promoting complex subunit 1 protein-coding 20875 chr3 186827490 186827639 + 0 NA Intergenic CpG -2043 NR_125409 102724699 Hs.518476 NR_125409 ENSG00000232233 LINC02043 - long intergenic non-protein coding RNA 2043 ncRNA 22068 chr4 182238475 182238529 + 0 NA Intergenic L2b|LINE|L2 -4929 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 29615 chr9 95426819 95426970 + 0 NA Intergenic Intergenic -36715 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 23646 chr5 160399981 160400131 + 0 NA promoter-TSS (NM_001303251) promoter-TSS (NM_001303251) 41 NM_001303251 63920 Hs.529464 NM_022090 ENSG00000221886 ZBED8 Buster3|C5orf54 zinc finger BED-type containing 8 protein-coding 10932 chr16 3611547 3611641 + 0 NA promoter-TSS (NM_032444) promoter-TSS (NM_032444) 12 NM_032444 84464 Hs.143681 NM_032444 ENSG00000188827 SLX4 BTBD12|FANCP|MUS312 SLX4 structure-specific endonuclease subunit protein-coding 3569 chr10 34758496 34758643 + 0 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 56756 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 3189 chr10 3467561 3467628 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 148899 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 3179 chr10 1364740 1364784 + 0 NA intron (NM_018702, intron 2 of 9) Tigger1|DNA|TcMar-Tigger -161868 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 6384 chr11 132024687 132024818 + 0 NA intron (NM_001144058, intron 1 of 7) intron (NM_001144058, intron 1 of 7) 113934 NM_016522 50863 Hs.504352 NM_016522 ENSG00000182667 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 30261 chr9 130690079 130690206 + 0 NA Intergenic MER51A|LTR|ERV1 -3618 NR_104230 23404 Hs.654643 NM_014285 ENSG00000130713 EXOSC2 RRP4|Rrp4p|hRrp4p|p7 exosome component 2 protein-coding 17755 chr20 22617198 22617361 + 0 NA Intergenic Intergenic -9762 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 17679 chr20 17531207 17531224 + 0 NA exon (NM_001195, exon 1 of 8) exon (NM_001195, exon 1 of 8) 154 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 30249 chr9 129885808 129885985 + 0 NA Intergenic CpG 16291 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 1593 chr1 117821852 117821956 + 0 NA Intergenic LTR18C|LTR|ERVL 107775 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3 ganglioside induced differentiation associated protein 2 protein-coding 10534 chr15 80202816 80202967 + 0 NA intron (NR_120317, intron 2 of 2) intron (NR_120317, intron 2 of 2) 49370 NR_120317 100996492 Hs.20034 NR_120317 ENSG00000259417 LINC01314 - long intergenic non-protein coding RNA 1314 ncRNA 6291 chr11 125887519 125887662 + 0 NA 5' UTR (NM_001134793, exon 1 of 3) 5' UTR (NM_001134793, exon 1 of 3) 530 NM_001134793 219844 Hs.98133 NM_145014 ENSG00000198331 HYLS1 HLS HYLS1, centriolar and ciliogenesis associated protein-coding 29511 chr9 90642894 90642939 + 0 NA 5' UTR (NM_017594, exon 1 of 2) 5' UTR (NM_017594, exon 1 of 2) 189 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 27841 chr8 53760193 53760333 + 0 NA intron (NM_015941, intron 11 of 13) MER50|LTR|ERV1 82779 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 5786 chr11 86134846 86134950 + 0 NA Intergenic L2c|LINE|L2 -65017 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 20086 chr3 126753404 126753550 + 0 NA intron (NM_032343, intron 4 of 7) intron (NM_032343, intron 4 of 7) 49257 NM_001320610 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 24060 chr6 13328532 13328710 + 0 NA promoter-TSS (NM_001318809) promoter-TSS (NM_001318809) -38 NM_001258457 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 14833 chr19 56404245 56404349 + 0 NA promoter-TSS (NM_152478) promoter-TSS (NM_152478) -28 NM_152478 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 912 chr1 54887263 54887290 + 0 NA promoter-TSS (NM_014762) promoter-TSS (NM_014762) -28 NM_014762 1718 Hs.498727 NM_014762 ENSG00000116133 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 14695 chr19 49640153 49640285 + 0 NA promoter-TSS (NM_006270) promoter-TSS (NM_006270) -76 NM_006270 6237 Hs.515536 NM_006270 ENSG00000126458 RRAS - related RAS viral (r-ras) oncogene homolog protein-coding 20079 chr3 126208646 126208807 + 0 NA non-coding (NR_046383, exon 2 of 2) non-coding (NR_046383, exon 2 of 2) -27540 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 12319 chr17 31655078 31655223 + 0 NA Intergenic Intergenic 79739 NR_029856 100126356 NR_029856 ENSG00000228768 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 12554 chr17 44138152 44138233 + 0 NA Intergenic Intergenic -3710 NM_024032 78995 Hs.437059 NM_024032 ENSG00000125319 C17orf53 - chromosome 17 open reading frame 53 protein-coding 25580 chr7 4520267 4520418 + 0 NA Intergenic Intergenic -161957 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 29535 chr9 91727454 91727558 + 0 NA intron (NM_001318204, intron 7 of 7) intron (NM_001318204, intron 7 of 7) -91161 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 9465 chr14 80954852 80955040 + 0 NA promoter-TSS (NM_000369) promoter-TSS (NM_000369) -579 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 13237 chr18 5296060 5296156 + 0 NA promoter-TSS (NM_001243702) promoter-TSS (NM_001243702) 87 NM_003409 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 923 chr1 56064905 56065009 + 0 NA Intergenic Intergenic 514627 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 12898 chr17 68292113 68292217 + 0 NA promoter-TSS (NM_001174166) promoter-TSS (NM_001174166) 670 NM_001267727 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG - arylsulfatase G protein-coding 14095 chr19 10899551 10899647 + 0 NA intron (NM_199141, intron 1 of 15) intron (NM_199141, intron 1 of 15) 28022 NM_199141 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 17554 chr20 6829006 6829115 + 0 NA Intergenic Intergenic 60962 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 26640 chr7 96486866 96486970 + 0 NA intron (NM_001201451, intron 2 of 3) intron (NM_001201451, intron 2 of 3) 16605 NM_001201450 401388 Hs.734935 NM_207503 ENSG00000127922 C7orf76 - chromosome 7 open reading frame 76 protein-coding 14221 chr19 16572469 16572615 + 0 NA promoter-TSS (NM_024881) promoter-TSS (NM_024881) -160 NM_024881 79939 Hs.620596 NM_024881 ENSG00000127526 SLC35E1 - solute carrier family 35 member E1 protein-coding 28572 chr8 123528283 123528387 + 0 NA intron (NM_058229, intron 4 of 8) intron (NM_058229, intron 4 of 8) 3808 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 24666 chr6 48757765 48757837 + 0 NA Intergenic L1PA16|LINE|L1 -689112 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 12278 chr17 28903133 28903260 + 0 NA promoter-TSS (NM_144683) promoter-TSS (NM_144683) -125 NM_144683 147015 Hs.631760 NM_144683 ENSG00000167536 DHRS13 SDR7C5 dehydrogenase/reductase 13 protein-coding 21826 chr4 139243544 139243697 + 0 NA Intergenic Intergenic 36718 NM_032623 84709 Hs.710036 NM_032623 ENSG00000137463 MGARP C4orf49|CESP-1|HUMMR|OSAP mitochondria localized glutamic acid rich protein protein-coding 27498 chr8 22109416 22109520 + 0 NA promoter-TSS (NM_024815) promoter-TSS (NM_024815) -49 NM_024815 79873 Hs.527101 NM_024815 ENSG00000275074 NUDT18 MTH3 nudix hydrolase 18 protein-coding 15264 chr2 28565984 28566141 + 0 NA promoter-TSS (NR_138141) promoter-TSS (NR_138141) -295 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 30572 chrX 23901126 23901243 + 0 NA intron (NR_026545, intron 1 of 7) intron (NR_026545, intron 1 of 7) 6756 NR_026545 79135 Hs.495851 NM_024122 ENSG00000184831 APOO FAM121B|MIC26|Mic23|My025 apolipoprotein O protein-coding 11568 chr16 69762214 69762328 + 0 NA promoter-TSS (NM_001270455) promoter-TSS (NM_001270455) -13 NM_001270455 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 30724 chrX 50799627 50799706 + 0 NA intron (NR_027121, intron 1 of 9) intron (NR_027121, intron 1 of 9) 14378 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP shroom family member 4 protein-coding 24447 chr6 35401057 35401156 + 0 NA intron (NM_001171818, intron 3 of 8) MIR3|SINE|MIR -51255 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE Fanconi anemia complementation group E protein-coding 9080 chr14 56666367 56666471 + 0 NA Intergenic MER61E|LTR|ERV1 86626 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101 transmembrane protein 260 protein-coding 2404 chr1 202143407 202143491 + 0 NA intron (NM_138795, intron 1 of 6) intron (NM_138795, intron 1 of 6) 1294 NM_138795 127829 Hs.497399 NM_138795 ENSG00000143862 ARL8A ARL10B|GIE2 ADP ribosylation factor like GTPase 8A protein-coding 23673 chr5 168288418 168288526 + 0 NA Intergenic Intergenic -3588 NM_001161661 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 14841 chr19 57351141 57351248 + 0 NA promoter-TSS (NM_001329456) promoter-TSS (NM_001329456) -80 NM_001329456 57343 Hs.287374 NM_020657 ENSG00000131845 ZNF304 - zinc finger protein 304 protein-coding 2611 chr1 211643600 211643748 + 0 NA intron (NR_131925, intron 2 of 2) intron (NR_131925, intron 2 of 2) 3866 NR_131925 105748977 Hs.553186 NR_131925 LINC01693 - long intergenic non-protein coding RNA 1693 ncRNA 65 chr1 3901356 3901505 + 0 NA intron (NR_024455, intron 1 of 3) CpG 1026 NR_024455 100133612 Hs.307652 NR_024455 ENSG00000236423 LINC01134 - long intergenic non-protein coding RNA 1134 ncRNA 21796 chr4 128529264 128529276 + 0 NA Intergenic Intergenic 101254 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 6887 chr12 42144944 42144947 + 0 NA promoter-TSS (NM_001099650) promoter-TSS (NM_001099650) -74 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 7343 chr12 84508703 84508719 + 0 NA Intergenic MER50-int|LTR|ERV1 404118 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 20904 chr3 189167157 189167311 + 0 NA Intergenic Intergenic -4740 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 23942 chr6 5542220 5542253 + 0 NA intron (NM_006567, intron 4 of 6) MER41B|LTR|ERV1 -84161 NR_125846 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 20697 chr3 176916998 176917102 + 0 NA Intergenic MER31B|LTR|ERV1 -100049 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 30952 chrX 108270409 108270568 + 0 NA intron (NM_033641, intron 3 of 44) MLT1H|LTR|ERVL-MaLR 167942 NM_001287760 1288 Hs.145586 NM_001847 ENSG00000197565 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen type IV alpha 6 chain protein-coding 9358 chr14 73760170 73760318 + 0 NA promoter-TSS (NM_194278) promoter-TSS (NM_194278) 54 NM_194278 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 15115 chr2 18560047 18560151 + 0 NA intron (NM_001199103, intron 8 of 8) intron (NM_001199103, intron 8 of 8) 594 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding 15273 chr2 28751598 28751606 + 0 NA promoter-TSS (NM_206876) promoter-TSS (NM_206876) -146 NM_206876 5500 Hs.702907 NM_002709 ENSG00000213639 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1 catalytic subunit beta protein-coding 30590 chrX 28498858 28498962 + 0 NA Intergenic Intergenic -3247 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 12255 chr17 28357468 28357646 + 0 NA promoter-TSS (NM_001290145) promoter-TSS (NM_001290145) -24 NM_152464 147007 Hs.594696 NM_152464 ENSG00000244045 TMEM199 C17orf32|CDG2P|VMA12|VPH2 transmembrane protein 199 protein-coding 20960 chr3 190862749 190862868 + 0 NA promoter-TSS (NM_001146686) promoter-TSS (NM_001146686) -132 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 23267 chr5 135399262 135399332 + 0 NA promoter-TSS (NM_001040158) promoter-TSS (NM_001040158) -59 NM_001040158 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 26649 chr7 97872417 97872501 + 0 NA promoter-TSS (NM_133436) promoter-TSS (NM_133436) 83 NM_183356 440 Hs.489207 NM_001673 ENSG00000070669 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 6093 chr11 112318428 112318456 + 0 NA intron (NR_126004, intron 2 of 3) MER89|LTR|ERV1 47693 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LOC283140 - uncharacterized LOC283140 ncRNA 1199 chr1 84854486 84854532 + 0 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 38704 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 5528 chr11 66677820 66677985 + 0 NA promoter-TSS (NM_031492) promoter-TSS (NM_031492) 19 NM_031492 83759 Hs.618713 NM_031492 ENSG00000173914 RBM4B RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B RNA binding motif protein 4B protein-coding 10017 chr15 45158079 45158183 + 0 NA intron (NM_017434, intron 29 of 34) intron (NM_017434, intron 29 of 34) 23076 NM_001301171 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 26424 chr7 74575503 74575572 + 0 NA intron (NM_016328, intron 22 of 26) L2b|LINE|L2 -82128 NM_032999 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 25734 chr7 16293770 16293894 + 0 NA intron (NM_001101426, intron 5 of 9) intron (NM_001101426, intron 5 of 9) 83346 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 ISPD-AS1 - ISPD antisense RNA 1 ncRNA 23769 chr5 175729994 175730098 + 0 NA Intergenic Intergenic 48585 NM_022304 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R histamine receptor H2 protein-coding 656 chr1 38012583 38012687 + 0 NA promoter-TSS (NM_016037) promoter-TSS (NM_016037) -77 NM_016037 51118 Hs.472038 NM_016037 ENSG00000183520 UTP11 CGI-94|CGI94|UTP11L UTP11, small subunit processome component homolog (S. cerevisiae) protein-coding 24018 chr6 10404476 10404617 + 0 NA exon (NM_003220, exon 4 of 7) exon (NM_003220, exon 4 of 7) -7772 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 30195 chr9 128702436 128702563 + 0 NA promoter-TSS (NM_001317926) promoter-TSS (NM_001317926) -5 NM_001317926 29941 Hs.300485 NM_013355 ENSG00000160447 PKN3 UTDP4-1 protein kinase N3 protein-coding 30298 chr9 132631551 132631673 + 0 NA intron (NM_022779, intron 15 of 19) intron (NM_022779, intron 15 of 19) 31714 NM_001322343 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding 13128 chr17 81365905 81366063 + 0 NA Intergenic Intergenic 19141 NM_001347841 100130370 Hs.646594 NM_001272086 LOC100130370 - uncharacterized LOC100130370 protein-coding 26063 chr7 36605438 36605549 + 0 NA intron (NM_001637, intron 11 of 20) intron (NM_001637, intron 11 of 20) -5373 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 15552 chr2 54115806 54115999 + 0 NA intron (NM_001320590, intron 1 of 3) CpG 629 NM_001320590 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 21868 chr4 145732987 145733147 + 0 NA TTS (NM_001080531) TTS (NM_001080531) 52863 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 3468 chr10 26860205 26860309 + 0 NA intron (NM_001178116, intron 1 of 11) CpG 830 NM_001012750 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 18802 chr22 31254107 31254215 + 0 NA intron (NM_016733, intron 1 of 14) intron (NM_016733, intron 1 of 14) 5799 NM_016733 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 10519 chr15 79381164 79381315 + 0 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) -51277 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 KIAA1024 - KIAA1024 protein-coding 23399 chr5 142356995 142357128 + 0 NA intron (NR_120664, intron 3 of 3) CpG 31768 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 LOC101926941 - uncharacterized LOC101926941 ncRNA 25167 chr6 133341729 133341833 + 0 NA intron (NM_001301012, intron 2 of 17) intron (NM_001301012, intron 2 of 17) 100282 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 3195 chr10 3763339 3763443 + 0 NA Intergenic Intergenic 21890 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 9321 chr14 71320233 71320410 + 0 NA Intergenic CpG -78016 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 20344 chr3 146544629 146544809 + 0 NA 5' UTR (NM_021105, exon 1 of 9) 5' UTR (NM_021105, exon 1 of 9) 122 NM_021105 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 18113 chr20 46089988 46090057 + 0 NA promoter-TSS (NM_020967) promoter-TSS (NM_020967) -81 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 1482 chr1 109783407 109783605 + 0 NA Intergenic Intergenic -19484 NM_024526 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 885 chr1 53326276 53326380 + 0 NA intron (NM_001018054, intron 2 of 17) CpG 1821 NM_004631 7804 Hs.280387 NM_004631 ENSG00000157193 LRP8 APOER2|HSZ75190|LRP-8|MCI1 LDL receptor related protein 8 protein-coding 30778 chrX 65667535 65667639 + 0 NA promoter-TSS (NM_002444) promoter-TSS (NM_002444) -57 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 31101 chrX 136353863 136354016 + 0 NA intron (NM_153834, intron 8 of 25) intron (NM_153834, intron 8 of 25) 52976 NM_153834 139378 Hs.381354 NM_153834 ENSG00000156920 ADGRG4 GPR112|PGR17|RP1-299I16 adhesion G protein-coupled receptor G4 protein-coding 24011 chr6 10310827 10311006 + 0 NA Intergenic Intergenic -101402 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 5075 chr11 29809232 29809336 + 0 NA Intergenic L2|LINE|L2 173109 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 228 chr1 16206608 16206762 + 0 NA intron (NM_153213, intron 6 of 15) CpG 5986 NM_153213 128272 Hs.591532 NM_153213 ENSG00000142632 ARHGEF19 WGEF Rho guanine nucleotide exchange factor 19 protein-coding 10684 chr15 90184169 90184315 + 0 NA promoter-TSS (NM_001324030) promoter-TSS (NM_001324030) -678 NM_001324030 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 22431 chr5 40551830 40551878 + 0 NA Intergenic MLT2A2|LTR|ERVL -128076 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 18253 chr20 53753331 53753429 + 0 NA Intergenic Intergenic 122329 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 3783 chr10 63700247 63700351 + 0 NA Intergenic Intergenic -178224 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 10824 chr15 101295263 101295320 + 0 NA promoter-TSS (NM_003090) promoter-TSS (NM_003090) -9 NR_135508 6627 Hs.528763 NM_003090 ENSG00000131876 SNRPA1 Lea1 small nuclear ribonucleoprotein polypeptide A' protein-coding 20465 chr3 155498067 155498171 + 0 NA intron (NM_014996, intron 13 of 21) Tigger7|DNA|TcMar-Tigger 178197 NM_001130961 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 12869 chr17 65561577 65561681 + 0 NA promoter-TSS (NM_004655) promoter-TSS (NM_004655) -7 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 25160 chr6 132513055 132513206 + 0 NA promoter-TSS (NM_003569) promoter-TSS (NM_003569) 68 NM_001326580 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 29529 chr9 91361831 91361982 + 0 NA promoter-TSS (NM_001698) promoter-TSS (NM_001698) 18 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 20001 chr3 120244348 120244499 + 0 NA promoter-TSS (NM_001168271) promoter-TSS (NM_001168271) -128 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 17258 chr2 230794138 230794200 + 0 NA intron (NM_001130850, intron 4 of 8) intron (NM_001130850, intron 4 of 8) -70429 NM_001287241 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 1521 chr1 112394268 112394388 + 0 NA Intergenic Intergenic -1850 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 5029 chr11 26234604 26234708 + 0 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 45533 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 26622 chr7 94657923 94658083 + 0 NA intron (NM_001172437, intron 1 of 1) intron (NM_001172437, intron 1 of 1) 1678 NM_001184962 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3 paternally expressed 10 protein-coding 2352 chr1 200669770 200669874 + 0 NA 5' UTR (NM_001320181, exon 1 of 8) 5' UTR (NM_001320181, exon 1 of 8) 176 NM_001031725 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 21278 chr4 34046779 34046883 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR -6938 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 21139 chr4 5712627 5712663 + 0 NA intron (NM_001306092, intron 1 of 11) intron (NM_001306092, intron 1 of 11) 1448 NM_001306090 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 5420 chr11 63986218 63986389 + 0 NA non-coding (NR_003089, exon 1 of 6) non-coding (NR_003089, exon 1 of 6) 450 NM_017670 55611 Hs.473788 NM_017670 ENSG00000167770 OTUB1 HSPC263|OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 1066 chr1 67430449 67430566 + 0 NA promoter-TSS (NM_015640) promoter-TSS (NM_015640) -67 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 26269 chr7 50812989 50813093 + 0 NA Intergenic Intergenic -19579 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 25666 chr7 7795853 7795974 + 0 NA intron (NM_001302350, intron 3 of 4) MER41B|LTR|ERV1 -77306 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 23969 chr6 7480080 7480209 + 0 NA Intergenic Intergenic -61431 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 487 chr1 28736776 28736891 + 0 NA promoter-TSS (NM_001172828) promoter-TSS (NM_001172828) -107 NM_001172828 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 16253 chr2 121975167 121975361 + 0 NA Intergenic Intergenic 219719 NR_048557 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 27852 chr8 54153526 54153559 + 0 NA Intergenic A-rich|Low_complexity|Low_complexity 18321 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 18997 chr22 44685615 44685719 + 0 NA intron (NM_001198721, intron 2 of 9) intron (NM_001198721, intron 2 of 9) 8859 NM_001017530 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 3604 chr10 42638593 42638742 + 0 NA non-coding (NR_130950, exon 1 of 5) non-coding (NR_130950, exon 1 of 5) 170 NM_001305038 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 4819 chr11 10751120 10751224 + 0 NA 5' UTR (NM_001346279, exon 1 of 24) 5' UTR (NM_001346279, exon 1 of 24) 185 NM_001346279 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 11039 chr16 13957879 13958036 + 0 NA Intergenic Intergenic 37800 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 22476 chr5 43771633 43771737 + 0 NA Intergenic Intergenic -168455 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 23933 chr6 4734296 4734400 + 0 NA intron (NR_026590, intron 2 of 8) LTR78B|LTR|ERV1 28189 NR_026590 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y-like protein-coding 11406 chr16 56682275 56682440 + 0 NA promoter-TSS (NM_005952) promoter-TSS (NM_005952) -113 NM_005952 4501 Hs.374950 NM_005952 ENSG00000187193 MT1X MT-1l|MT1 metallothionein 1X protein-coding 30578 chrX 24398935 24399039 + 0 NA Intergenic Intergenic 36226 NM_001136234 100130302 Hs.717243 NM_001136234 SUPT20HL1 FAM48B1|SPT20L SPT20 homolog, SAGA complex component-like 1 protein-coding 27482 chr8 19438559 19438688 + 0 NA intron (NR_024040, intron 6 of 9) MER58A|DNA|hAT-Charlie 124647 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 3634 chr10 45001083 45001187 + 0 NA promoter-TSS (NR_126421) promoter-TSS (NR_126421) -225 NM_001039380 220979 Hs.707791 NM_001039380 C10orf25 - chromosome 10 open reading frame 25 protein-coding 6751 chr12 25495702 25495806 + 0 NA TTS (NM_001145727) TTS (NM_001145727) 57529 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 18819 chr22 32695648 32695752 + 0 NA intron (NM_001135774, intron 6 of 13) intron (NM_001135774, intron 6 of 13) -105116 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 20118 chr3 129183876 129184026 + 0 NA promoter-TSS (NM_001127192) promoter-TSS (NM_001127192) 16 NM_001127196 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 9539 chr14 90332044 90332145 + 0 NA promoter-TSS (NM_017970) promoter-TSS (NM_017970) 43 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 30044 chr9 121398428 121398581 + 0 NA Intergenic Intergenic -28200 NM_198194 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 25974 chr7 30551186 30551359 + 0 NA intron (NR_038889, intron 6 of 6) intron (NR_038889, intron 6 of 6) 26507 NR_038889 401320 Hs.561708 NR_038889 LOC401320 - uncharacterized LOC401320 ncRNA 11586 chr16 71289438 71289561 + 0 NA promoter-TSS (NM_001324379) promoter-TSS (NM_001324379) 40 NM_001324379 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 22142 chr5 759203 759307 + 0 NA Intergenic Intergenic -65860 NM_007030 11076 Hs.481466 NM_007030 ENSG00000171368 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 14550 chr19 45405162 45405221 + 0 NA promoter-TSS (NM_006663) promoter-TSS (NM_006663) -137 NM_006663 10848 Hs.466937 NM_006663 ENSG00000104881 PPP1R13L IASPP|NKIP1|RAI|RAI4 protein phosphatase 1 regulatory subunit 13 like protein-coding 7912 chr12 132524518 132524683 + 0 NA intron (NM_001142641, intron 2 of 16) intron (NM_001142641, intron 2 of 16) 34029 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin like 1 protein-coding 11939 chr17 3636313 3636470 + 0 NA promoter-TSS (NM_013276) promoter-TSS (NM_013276) -69 NM_013276 23729 Hs.579217 NM_013276 ENSG00000197417 SHPK CARKL|SHK sedoheptulokinase protein-coding 16707 chr2 176612814 176612918 + 0 NA Intergenic Intergenic -11814 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 19835 chr3 108406718 108406852 + 0 NA intron (NM_014981, intron 33 of 41) intron (NM_014981, intron 33 of 41) 95000 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 1532 chr1 112905043 112905147 + 0 NA Intergenic Intergenic -18255 NR_002796 246182 Hs.647691 NR_002796 AKR7A2P1 AFARP1 aldo-keto reductase family 7 member A2 pseudogene 1 pseudo 17656 chr20 14712405 14712571 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) 158104 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 16735 chr2 178414714 178414867 + 0 NA intron (NR_110206, intron 1 of 2) intron (NR_110206, intron 1 of 2) 1131 NR_110205 101927027 Hs.715694 NR_110204 ENSG00000223960 LOC101927027 - uncharacterized LOC101927027 ncRNA 17522 chr20 5126832 5126969 + 0 NA promoter-TSS (NM_002592) promoter-TSS (NM_002592) 139 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 10148 chr15 56042133 56042237 + 0 NA Intergenic Intergenic -48439 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding 26963 chr7 127392174 127392291 + 0 NA 5' UTR (NM_176814, exon 1 of 6) 5' UTR (NM_176814, exon 1 of 6) 492 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 5518 chr11 66466697 66466845 + 0 NA promoter-TSS (NM_001098510) promoter-TSS (NM_001098510) -94 NM_001098510 246330 Hs.656875 NM_145065 ENSG00000174516 PELI3 - pellino E3 ubiquitin protein ligase family member 3 protein-coding 14071 chr19 10333504 10333624 + 0 NA promoter-TSS (NM_133452) promoter-TSS (NM_133452) 74 NM_133452 125950 Hs.744952 NM_133452 ENSG00000161847 RAVER1 - ribonucleoprotein, PTB binding 1 protein-coding 24436 chr6 34757365 34757484 + 0 NA non-coding (NR_029472, exon 1 of 5) non-coding (NR_029472, exon 1 of 5) 330 NM_003093 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 21952 chr4 158810288 158810328 + 0 NA intron (NM_001323916, intron 1 of 16) intron (NM_001323916, intron 1 of 16) 4214 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 10270 chr15 64187529 64187670 + 0 NA intron (NM_022048, intron 10 of 11) intron (NM_022048, intron 10 of 11) -24444 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 25925 chr7 27347002 27347186 + 0 NA Intergenic Intergenic -99865 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 6608 chr12 11801797 11801871 + 0 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 151980 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 16290 chr2 127932628 127932732 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -46740 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 29431 chr9 85805723 85805827 + 0 NA promoter-TSS (NR_029410) promoter-TSS (NR_029410) -227 NR_029410 389765 Hs.715986 NR_029410 LOC389765 - kinesin family member 27 pseudogene pseudo 25838 chr7 22573020 22573039 + 0 NA non-coding (NR_038393, exon 4 of 4) non-coding (NR_038393, exon 4 of 4) 9692 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 24689 chr6 52454667 52454833 + 0 NA intron (NR_033327, intron 4 of 9) intron (NR_033327, intron 4 of 9) 33743 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 4233 chr10 101353887 101353896 + 0 NA promoter-TSS (NM_001256856) promoter-TSS (NM_001256856) -142 NM_001256856 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 29754 chr9 106432803 106432807 + 0 NA Intergenic Intergenic -168123 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 4238 chr10 101588321 101588425 + 0 NA promoter-TSS (NM_001174084) promoter-TSS (NM_001174084) 85 NM_001329743 25911 Hs.658128 NM_015448 ENSG00000166171 DPCD - deleted in primary ciliary dyskinesia homolog (mouse) protein-coding 25621 chr7 6306512 6306557 + 0 NA Intergenic L1MB3|LINE|L1 -33923 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 9529 chr14 89416191 89416321 + 0 NA intron (NM_001085471, intron 1 of 6) CpG 854 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 12450 chr17 40099230 40099299 + 0 NA intron (NM_021724, intron 1 of 7) CpG 1461 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 21011 chr3 194135988 194136130 + 0 NA promoter-TSS (NM_005524) promoter-TSS (NM_005524) -83 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 19636 chr3 66998195 66998299 + 0 NA promoter-TSS (NM_032505) promoter-TSS (NM_032505) -56 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 5022 chr11 25065767 25065871 + 0 NA intron (NM_001252010, intron 8 of 9) intron (NM_001252010, intron 8 of 9) 568849 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 5259 chr11 55658138 55658245 + 0 NA Intergenic MER73|LTR|ERVL -6976 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 23687 chr5 169164610 169164714 + 0 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 99032 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 1925 chr1 161083604 161083749 + 0 NA intron (NM_030916, intron 1 of 8) intron (NM_030916, intron 1 of 8) 5919 NM_030916 81607 Hs.492490 NM_030916 ENSG00000143217 NECTIN4 EDSS1|LNIR|PRR4|PVRL4|nectin-4 nectin cell adhesion molecule 4 protein-coding 25121 chr6 126180643 126180807 + 0 NA Intergenic Intergenic -159064 NM_001012507 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 19635 chr3 66998058 66998166 + 0 NA promoter-TSS (NM_032505) promoter-TSS (NM_032505) -191 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 18052 chr20 43939487 43939595 + 0 NA intron (NM_001098796, intron 1 of 8) intron (NM_001098796, intron 1 of 8) -6355 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 9421 chr14 77033418 77033548 + 0 NA Intergenic CpG -4784 NM_024496 64207 Hs.179260 NM_024496 ENSG00000119669 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein like protein-coding 17261 chr2 231056880 231056984 + 0 NA promoter-TSS (NM_001191037) promoter-TSS (NM_001191037) 68 NR_034059 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 28071 chr8 79873488 79873602 + 0 NA Intergenic Intergenic -1808 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 24627 chr6 45697804 45697908 + 0 NA Intergenic Intergenic 239741 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 7749 chr12 120292109 120292244 + 0 NA promoter-TSS (NR_003137) promoter-TSS (NR_003137) -273 NR_003137 26834 NR_003137 ENSG00000202538 RNU4-2 RNU4-1B|RNU4B1|RNU4C|U4A|U4b|U4c RNA, U4 small nuclear 2 snRNA 8962 chr14 49961655 49961759 + 0 NA Intergenic Intergenic -4692 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 13216 chr18 3129454 3129558 + 0 NA exon (NM_003803, exon 18 of 38) exon (NM_003803, exon 18 of 38) 90602 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 13010 chr17 75525666 75525770 + 0 NA promoter-TSS (NM_001015002) promoter-TSS (NM_001015002) 16 NM_001031803 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL2, scribble cell polarity complex component protein-coding 30766 chrX 56813523 56813713 + 0 NA intron (NR_015367, intron 2 of 2) intron (NR_015367, intron 2 of 2) -76034 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 26309 chr7 55186355 55186437 + 0 NA intron (NR_047551, intron 1 of 1) intron (NR_047551, intron 1 of 1) 2553 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 482 chr1 28581870 28582007 + 0 NA promoter-TSS (NR_024127) promoter-TSS (NR_024127) -84 NR_024127 85028 Hs.632377 NM_053040 ENSG00000197989 SNHG12 ASLNC04080|C1orf79|LINC00100|NCRNA00100 small nucleolar RNA host gene 12 ncRNA 7865 chr12 125186542 125186646 + 0 NA Intergenic CpG 121227 NM_001319839 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 3432 chr10 24255218 24255374 + 0 NA intron (NM_001098500, intron 3 of 18) intron (NM_001098500, intron 3 of 18) -20389 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 7429 chr12 92973792 92973938 + 0 NA Intergenic L1ME4a|LINE|L1 -44534 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 8237 chr13 47289692 47289796 + 0 NA Intergenic Intergenic -392668 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 10454 chr15 74938029 74938138 + 0 NA promoter-TSS (NM_004255) promoter-TSS (NM_004255) 71 NM_004255 9377 Hs.401903 NM_004255 ENSG00000178741 COX5A COX|COX-VA|VA cytochrome c oxidase subunit 5A protein-coding 22010 chr4 170259692 170259796 + 0 NA intron (NR_125889, intron 1 of 2) LTR33C|LTR|ERVL 33153 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 23043 chr5 113749552 113749571 + 0 NA Intergenic LTR8|LTR|ERV1 235899 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL YTH domain containing 2 protein-coding 28986 chr9 22037358 22037474 + 0 NA intron (NR_047539, intron 3 of 12) intron (NR_047539, intron 3 of 12) -28103 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 28977 chr9 21335311 21335467 + 0 NA promoter-TSS (NM_018847) promoter-TSS (NM_018847) 43 NM_018847 55958 Hs.701778 NM_018847 ENSG00000198642 KLHL9 - kelch like family member 9 protein-coding 26393 chr7 73624546 73624643 + 0 NA promoter-TSS (NM_032951) promoter-TSS (NM_032951) -51 NR_134541 51085 Hs.647055 NM_032951 ENSG00000009950 MLXIPL CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein like protein-coding 3856 chr10 71742487 71742510 + 0 NA intron (NM_022124, intron 36 of 67) intron (NM_022124, intron 36 of 67) -4674 NM_001168390 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 14981 chr2 9895836 9895979 + 0 NA intron (NM_005680, intron 8 of 14) intron (NM_005680, intron 8 of 14) 52465 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 19403 chr3 41933462 41933600 + 0 NA intron (NR_136342, intron 4 of 34) intron (NR_136342, intron 4 of 34) 28909 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 10263 chr15 63945846 63945990 + 0 NA intron (NM_014326, intron 4 of 11) intron (NM_014326, intron 4 of 11) 17644 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 8877 chr14 36057709 36057754 + 0 NA Intergenic Intergenic -12696 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 10482 chr15 76313947 76314051 + 0 NA Intergenic Intergenic -2530 NM_001127716 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein alpha subunit protein-coding 12477 chr17 41301525 41301626 + 0 NA TTS (NM_001257309) TTS (NM_001257309) 1276 NM_001257309 100533177 Hs.744833 NM_001257309 ENSG00000212658 KRTAP29-1 KAP29.2 keratin associated protein 29-1 protein-coding 24130 chr6 17993623 17993753 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -6065 NM_001243423 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 30178 chr9 128275975 128276138 + 0 NA promoter-TSS (NM_004486) promoter-TSS (NM_004486) -67 NM_004486 2801 Hs.155827 NM_004486 ENSG00000167110 GOLGA2 GM130 golgin A2 protein-coding 3228 chr10 5583723 5583862 + 0 NA Intergenic Intergenic 12326 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 12433 chr17 39461324 39461487 + 0 NA promoter-TSS (NM_015083) promoter-TSS (NM_015083) -106 NM_016507 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding 13990 chr19 5978146 5978255 + 0 NA promoter-TSS (NR_046376) promoter-TSS (NR_046376) 109 NM_001300865 8498 Hs.531752 NM_003624 ENSG00000031823 RANBP3 - RAN binding protein 3 protein-coding 9708 chr14 102568288 102568299 + 0 NA Intergenic L1M4c|LINE|L1 -24366 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 13837 chr19 639682 639786 + 0 NA promoter-TSS (NM_001300812) promoter-TSS (NM_001300812) -161 NM_001300812 27006 Hs.248087 NM_020637 ENSG00000070388 FGF22 - fibroblast growth factor 22 protein-coding 2981 chr1 234206975 234207129 + 0 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -7159 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 29459 chr9 87427918 87428022 + 0 NA Intergenic Intergenic -69258 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 4266 chr10 102743668 102743816 + 0 NA promoter-TSS (NM_001083913) promoter-TSS (NM_001083913) -228 NM_001083913 54838 Hs.500897 NM_017787 ENSG00000166272 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1-like protein-coding 8317 chr13 60397796 60397900 + 0 NA intron (NM_001146070, intron 1 of 13) CpG 555 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 14628 chr19 47713373 47713421 + 0 NA promoter-TSS (NM_014601) promoter-TSS (NM_014601) 53 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 19073 chr22_KI270735v1_random 39752 39903 + 0 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 28833 chr8 144147771 144147968 + 0 NA promoter-TSS (NM_001099280) promoter-TSS (NM_001099280) -147 NM_001099281 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 19957 chr3 117854037 117854064 + 0 NA Intergenic MamSINE1|SINE|tRNA-RTE -787718 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 7496 chr12 98504147 98504296 + 0 NA promoter-TSS (NR_038383) promoter-TSS (NR_038383) -366 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LOC643770 - uncharacterized LOC643770 ncRNA 14544 chr19 45178359 45178453 + 0 NA promoter-TSS (NM_001270891) promoter-TSS (NM_001270891) -163 NM_001270892 79090 Hs.466929 NM_024108 ENSG00000007255 TRAPPC6A TRS33 trafficking protein particle complex 6A protein-coding 7196 chr12 62260245 62260349 + 0 NA promoter-TSS (NM_006313) promoter-TSS (NM_006313) -43 NM_001252079 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 14373 chr19 35643492 35643596 + 0 NA exon (NM_001300974, exon 4 of 6) exon (NM_001300974, exon 4 of 6) 1807 NM_001300974 2116 Hs.194061 NM_014209 ENSG00000105672 ETV2 ER71|ETSRP71 ETS variant 2 protein-coding 24986 chr6 108558435 108558611 + 0 NA Intergenic CpG -1300 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 20917 chr3 189710750 189710854 + 0 NA intron (NM_001329148, intron 1 of 13) intron (NM_001329148, intron 1 of 13) -78858 NM_001114980 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 8652 chr13 113897336 113897440 + 0 NA intron (NM_001278674, intron 1 of 7) intron (NM_001278674, intron 1 of 7) 2285 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 9507 chr14 88385603 88385709 + 0 NA promoter-TSS (NM_001040428) promoter-TSS (NM_001040428) 12 NM_001040428 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 5161 chr11 35662749 35662848 + 0 NA promoter-TSS (NM_017583) promoter-TSS (NM_017583) 46 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 7328 chr12 80553440 80553544 + 0 NA intron (NM_001145026, intron 25 of 44) intron (NM_001145026, intron 25 of 44) 109146 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase, receptor type Q protein-coding 20455 chr3 154464851 154464980 + 0 NA Intergenic Intergenic -35200 NM_001038705 344758 Hs.688231 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10 G protein-coupled receptor 149 protein-coding 1729 chr1 151992585 151992722 + 0 NA intron (NM_002966, intron 1 of 2) intron (NM_002966, intron 1 of 2) 1585 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 6674 chr12 14932266 14932400 + 0 NA intron (NM_152321, intron 3 of 6) L2c|LINE|L2 -3208 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 20534 chr3 159763273 159763360 + 0 NA intron (NM_001197108, intron 1 of 6) CpG 5296 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 18298 chr20 56711205 56711351 + 0 NA Intergenic Intergenic 81976 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 21850 chr4 143184920 143184945 + 0 NA promoter-TSS (NM_032557) promoter-TSS (NM_032557) 15 NM_032557 84640 Hs.480848 NM_032557 ENSG00000170185 USP38 HP43.8KD ubiquitin specific peptidase 38 protein-coding 24215 chr6 26056413 26056561 + 0 NA promoter-TSS (NM_005319) promoter-TSS (NM_005319) -16 NM_005319 3006 Hs.7644 NM_005319 ENSG00000187837 HIST1H1C H1.2|H1C|H1F2|H1s-1 histone cluster 1 H1 family member c protein-coding 15372 chr2 38076490 38076497 + 0 NA promoter-TSS (NM_000104) promoter-TSS (NM_000104) -312 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 21082 chr3 197712350 197712511 + 0 NA intron (NM_001346873, intron 2 of 21) intron (NM_001346873, intron 2 of 21) 24496 NM_001346873 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 RUN and cysteine rich domain containing beclin 1 interacting protein protein-coding 14155 chr19 13143272 13143308 + 0 NA TTS (NM_001271609) TTS (NM_001271609) 7084 NM_001271610 8677 Hs.43812 NM_003765 ENSG00000104915 STX10 SYN10|hsyn10 syntaxin 10 protein-coding 29039 chr9 33290388 33290512 + 0 NA promoter-TSS (NM_147134) promoter-TSS (NM_147134) 33 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 27792 chr8 48864977 48865174 + 0 NA Intergenic Intergenic 56365 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 27723 chr8 40099991 40100017 + 0 NA Intergenic Intergenic -53464 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 29651 chr9 97802388 97802492 + 0 NA Intergenic Intergenic -50815 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 3897 chr10 73744252 73744402 + 0 NA promoter-TSS (NM_004922) promoter-TSS (NM_004922) -46 NM_198597 9632 Hs.81964 NM_004922 ENSG00000176986 SEC24C - SEC24 homolog C, COPII coat complex component protein-coding 4325 chr10 109676835 109676939 + 0 NA Intergenic Intergenic 246359 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 2040 chr1 168719520 168719624 + 0 NA intron (NM_001937, intron 1 of 3) intron (NM_001937, intron 1 of 3) 9632 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 9751 chr14 105119108 105119304 + 0 NA Intergenic Intergenic 25059 NR_110546 102723354 Hs.569410 NR_110546 LOC102723354 - uncharacterized LOC102723354 ncRNA 30410 chrUn_GL000216v2 146090 146243 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 27299 chr7 158829100 158829233 + 0 NA exon (NM_020728, exon 1 of 22) exon (NM_020728, exon 1 of 22) 462 NM_020728 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 17188 chr2 224817061 224817165 + 0 NA intron (NM_014689, intron 29 of 55) intron (NM_014689, intron 29 of 55) 129952 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 27186 chr7 148334951 148335055 + 0 NA intron (NM_014141, intron 21 of 23) intron (NM_014141, intron 21 of 23) -255562 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 16873 chr2 196799665 196799777 + 0 NA promoter-TSS (NM_012086) promoter-TSS (NM_012086) 47 NM_001206774 9330 Hs.470996 NM_012086 ENSG00000119041 GTF3C3 TFIIIC102|TFIIICgamma|TFiiiC2-102 general transcription factor IIIC subunit 3 protein-coding 5560 chr11 67421239 67421388 + 0 NA intron (NM_020811, intron 8 of 8) CpG-4560 5635 NM_001166222 57571 Hs.502982 NM_020811 ENSG00000172508 CARNS1 ATPGD1 carnosine synthase 1 protein-coding 5979 chr11 102975034 102975172 + 0 NA Intergenic Intergenic -19369 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 28841 chr8 144477949 144478082 + 0 NA promoter-TSS (NM_001329442) promoter-TSS (NM_001329442) 33 NM_032902 84988 Hs.521937 NM_032902 ENSG00000160972 PPP1R16A MYPT3 protein phosphatase 1 regulatory subunit 16A protein-coding 10624 chr15 86336127 86336280 + 0 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -19235 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 13184 chr17 82858498 82858631 + 0 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -18509 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 8350 chr13 73449455 73449554 + 0 NA Intergenic Intergenic -114740 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 9712 chr14 102993675 102993742 + 0 NA intron (NM_006035, intron 5 of 36) intron (NM_006035, intron 5 of 36) 63697 NM_006035 9578 Hs.654634 NM_006035 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta protein-coding 14030 chr19 8308029 8308121 + 0 NA TTS (NR_135539) TTS (NR_135539) 281 NM_016579 51293 Hs.558499 NM_016579 ENSG00000167775 CD320 8D6|8D6A|TCBLR CD320 molecule protein-coding 16035 chr2 101355800 101355955 + 0 NA intron (NM_153836, intron 2 of 3) LTR1F2|LTR|ERV1 31626 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 9937 chr15 40787617 40787762 + 0 NA intron (NM_018163, intron 1 of 10) intron (NM_018163, intron 1 of 10) 17728 NM_001130448 643338 Hs.631715 NM_001130448 ENSG00000188277 C15orf62 - chromosome 15 open reading frame 62 protein-coding 10838 chr16 235264 235331 + 0 NA intron (NR_104317, intron 1 of 13) CpG 751 NM_001284497 83986 Hs.513225 NM_032039 ENSG00000167930 FAM234A C16orf9|ITFG3|gs19 family with sequence similarity 234 member A protein-coding 7587 chr12 106309849 106309953 + 0 NA intron (NM_152772, intron 1 of 9) intron (NM_152772, intron 1 of 9) 7110 NM_152772 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 30447 chrX 2710336 2710375 + 0 NA intron (NM_001122898, intron 1 of 8) intron (NM_001122898, intron 1 of 8) 19222 NM_001321370 4267 Hs.653349 NM_002414 ENSG00000002586 CD99 HBA71|MIC2|MIC2X|MIC2Y|MSK5X CD99 molecule protein-coding 22392 chr5 37738229 37738376 + 0 NA intron (NM_001345998, intron 17 of 17) intron (NM_001345998, intron 17 of 17) 96520 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 1031 chr1 64965940 64966077 + 0 NA intron (NM_001321853, intron 2 of 26) CpG 561 NM_001321855 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 22887 chr5 93078739 93078837 + 0 NA Intergenic Intergenic 492555 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 25723 chr7 15016853 15016957 + 0 NA Intergenic Intergenic -175455 NM_004080 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 24269 chr6 28080107 28080235 + 0 NA promoter-TSS (NM_003447) promoter-TSS (NM_003447) -533 NM_003447 7718 Hs.55481 NM_003447 ENSG00000197279 ZNF165 CT53|LD65|ZSCAN7 zinc finger protein 165 protein-coding 21600 chr4 97507993 97508097 + 0 NA Intergenic MER21C|LTR|ERVL 141119 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 8882 chr14 36238760 36238864 + 0 NA Intergenic Intergenic -62161 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) ncRNA 28934 chr9 14251393 14251595 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) 62552 NM_005596 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 18219 chr20 51661693 51661797 + 0 NA intron (NM_006045, intron 13 of 27) intron (NM_006045, intron 13 of 27) -98914 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells 2 protein-coding 13297 chr18 21704813 21704948 + 0 NA promoter-TSS (NM_001308256) promoter-TSS (NM_001308256) -75 NM_001308256 171586 Hs.397978 NM_138340 ENSG00000158201 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 14937 chr2 6372703 6372723 + 0 NA non-coding (NR_110251, exon 1 of 3) non-coding (NR_110251, exon 1 of 3) 2709 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 17879 chr20 33555036 33555187 + 0 NA intron (NM_001032999, intron 1 of 10) MER57E1|LTR|ERV1 -7254 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 26922 chr7 122006777 122006881 + 0 NA intron (NM_001206839, intron 11 of 28) LTR33|LTR|ERVL 133724 NM_002851 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase, receptor type Z1 protein-coding 19240 chr3 20057359 20057463 + 0 NA intron (NM_003884, intron 1 of 17) L2|LINE|L2 17379 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 10411 chr15 72222568 72222676 + 0 NA intron (NM_001206798, intron 1 of 10) intron (NM_001206798, intron 1 of 10) 7100 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 25686 chr7 12458661 12458765 + 0 NA Intergenic Intergenic -37716 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 5455 chr11 65041011 65041115 + 0 NA TTS (NR_037650) TTS (NR_037650) 159 NM_013299 29901 Hs.23642 NM_013299 ENSG00000168061 SAC3D1 HSU79266|SHD1 SAC3 domain containing 1 protein-coding 15611 chr2 60479671 60479775 + 0 NA intron (NM_022893, intron 2 of 3) intron (NM_022893, intron 2 of 3) 73775 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 26668 chr7 99111808 99111834 + 0 NA intron (NM_001199847, intron 1 of 17) L1M4|LINE|L1 32299 NM_020429 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 30564 chrX 23276034 23276146 + 0 NA intron (NR_073010, intron 1 of 11) intron (NR_073010, intron 1 of 11) 17056 NR_073010 100873065 Hs.628459 NR_046436 PTCHD1-AS DDX53-AS1|PTCHD1AS1|PTCHD1AS2 PTCHD1 antisense RNA (head to head) ncRNA 27332 chr8 6708192 6708324 + 0 NA promoter-TSS (NR_125386) promoter-TSS (NR_125386) -49 NR_125386 100507530 Hs.490892 NR_125386 MCPH1-AS1 - MCPH1 antisense RNA 1 ncRNA 23293 chr5 137235426 137235542 + 0 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 107287 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 22586 chr5 59127628 59127816 + 0 NA intron (NM_001165899, intron 7 of 16) intron (NM_001165899, intron 7 of 16) -88210 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 11752 chr16 83689440 83689544 + 0 NA intron (NM_001257, intron 10 of 13) intron (NM_001257, intron 10 of 13) 114484 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 22369 chr5 35859519 35859623 + 0 NA intron (NM_002185, intron 1 of 7) intron (NM_002185, intron 1 of 7) 2696 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 17648 chr20 13820360 13820401 + 0 NA Intergenic Intergenic 35354 NR_029377 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 3741 chr10 60733433 60733618 + 0 NA promoter-TSS (NM_001204403) promoter-TSS (NM_001204403) 1 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 3324 chr10 14653917 14653931 + 0 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -49506 NM_001282696 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 31069 chrX 132402077 132402181 + 0 NA intron (NM_001170704, intron 3 of 8) intron (NM_001170704, intron 3 of 8) 11446 NM_001170702 55796 Hs.105134 NM_018388 ENSG00000076770 MBNL3 CHCR|MBLX|MBLX39|MBXL muscleblind like splicing regulator 3 protein-coding 29394 chr9 83979579 83979683 + 0 NA intron (NM_031262, intron 1 of 16) CpG 640 NM_001318186 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 4813 chr11 10451185 10451339 + 0 NA intron (NM_000480, intron 1 of 14) intron (NM_000480, intron 1 of 14) 585 NM_000480 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 8822 chr14 33668195 33668299 + 0 NA intron (NM_001164749, intron 5 of 11) intron (NM_001164749, intron 5 of 11) -40690 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 325 chr1 21638868 21638872 + 0 NA intron (NM_001145658, intron 2 of 24) MIRb|SINE|MIR 12985 NM_001145658 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 6657 chr12 13741303 13741407 + 0 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 238733 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 15165 chr2 22536309 22536392 + 0 NA promoter-TSS (NR_110577) promoter-TSS (NR_110577) -129 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 7263 chr12 72271667 72271690 + 0 NA intron (NR_026836, intron 2 of 2) intron (NR_026836, intron 2 of 2) -1071 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 13243 chr18 7301261 7301389 + 0 NA Intergenic Intergenic 70186 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 18652 chr22 20531385 20531580 + 0 NA intron (NM_001293237, intron 1 of 16) MIRb|SINE|MIR 23434 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 15079 chr2 15912330 15912434 + 0 NA Intergenic Intergenic -8017 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 12104 chr17 10622739 10622895 + 0 NA non-coding (NR_125367, exon 11 of 11) non-coding (NR_125367, exon 11 of 11) 34492 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 DA2A|DA2B|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 7563 chr12 104280852 104280956 + 0 NA intron (NM_001093771, intron 3 of 16) MLT2D|LTR|ERVL -5778 NM_182742 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 6188 chr11 119102140 119102290 + 0 NA promoter-TSS (NM_001382) promoter-TSS (NM_001382) -140 NM_001382 1798 Hs.524081 NM_001382 ENSG00000172269 DPAGT1 ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 protein-coding 27682 chr8 37421182 37421286 + 0 NA intron (NR_121620, intron 6 of 6) intron (NR_121620, intron 6 of 6) 72679 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 4946 chr11 17352994 17353098 + 0 NA intron (NM_001202439, intron 1 of 4) intron (NM_001202439, intron 1 of 4) 1284 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 30995 chrX 118067095 118067182 + 0 NA intron (NM_001168301, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 49727 NM_001168302 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 25449 chr6 161375262 161375356 + 0 NA intron (NM_004562, intron 10 of 11) intron (NM_004562, intron 10 of 11) -95668 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 23703 chr5 170534260 170534364 + 0 NA intron (NM_014592, intron 1 of 7) MER57E1|LTR|ERV1 30276 NM_001278340 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 30865 chrX 85992965 85993027 + 0 NA intron (NM_001145414, intron 2 of 4) intron (NM_001145414, intron 2 of 4) 54329 NM_001320959 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM, Rab escort protein 1 protein-coding 30888 chrX 101799508 101799612 + 0 NA Intergenic Intergenic 58017 NR_028089 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 14808 chr19 55259080 55259289 + 0 NA promoter-TSS (NM_014931) promoter-TSS (NM_014931) -514 NM_014931 22870 Hs.515610 NM_014931 ENSG00000105063 PPP6R1 KIAA1115|PP6R1|SAP190|SAPS1 protein phosphatase 6 regulatory subunit 1 protein-coding 30940 chrX 107711158 107711281 + 0 NA Intergenic Intergenic 5262 NM_001015881 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 25758 chr7 17372302 17372480 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -2526 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 389 chr1 25240028 25240132 + 0 NA Intergenic CpG 7439 NR_135785 57035 Hs.259412 NM_020317 ENSG00000117616 RSRP1 C1orf63|NPD014 arginine and serine rich protein 1 protein-coding 21446 chr4 74283746 74283850 + 0 NA intron (NM_001004346, intron 8 of 8) intron (NM_001004346, intron 8 of 8) -24672 NR_073117 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 17580 chr20 10524794 10524898 + 0 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 89543 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 3525 chr10 31353750 31353874 + 0 NA intron (NM_001323677, intron 1 of 8) MamSINE1|SINE|tRNA-RTE 32191 NM_001323675 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 16948 chr2 203684140 203684244 + 0 NA Intergenic Intergenic -22283 NM_006139 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 10081 chr15 50765667 50765772 + 0 NA promoter-TSS (NM_032802) promoter-TSS (NM_032802) -6 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 6649 chr12 13196740 13196844 + 0 NA 5' UTR (NM_001423, exon 1 of 5) 5' UTR (NM_001423, exon 1 of 5) 124 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 12400 chr17 37361645 37361797 + 0 NA intron (NM_198839, intron 4 of 59).2 intron (NM_198839, intron 4 of 59).2 -2605 NM_198836 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 21730 chr4 117137370 117137474 + 0 NA Intergenic AluJr|SINE|Alu -51842 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1-like 1 protein-coding 21141 chr4 5773248 5773444 + 0 NA intron (NM_001306090, intron 11 of 20) intron (NM_001306090, intron 11 of 20) 62149 NM_001306090 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 2314 chr1 198156881 198157082 + 0 NA promoter-TSS (NM_133494) promoter-TSS (NM_133494) 3 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 2216 chr1 183515105 183515209 + 0 NA intron (NM_201569, intron 2 of 22) MamRTE1|LINE|RTE-BovB 42786 NM_173156 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7, nonsense mediated mRNA decay factor protein-coding 15244 chr2 27720215 27720358 + 0 NA Intergenic Intergenic -4554 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 3124 chr1 244970317 244970471 + 0 NA promoter-TSS (NM_001290327) promoter-TSS (NM_001290327) 65 NM_001143943 84288 Hs.134857 NM_032328 ENSG00000203666 EFCAB2 CFAP200|DRC8 EF-hand calcium binding domain 2 protein-coding 12113 chr17 12523065 12523169 + 0 NA Intergenic Intergenic -26851 NR_034145 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 5473 chr11 65371287 65371345 + 0 NA Intergenic Intergenic 11070 NM_001300820 283130 Hs.661604 NM_182556 ENSG00000162241 SLC25A45 - solute carrier family 25 member 45 protein-coding 29916 chr9 113602234 113602338 + 0 NA Intergenic Intergenic 8132 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 10274 chr15 64387647 64387869 + 0 NA promoter-TSS (NM_016213) promoter-TSS (NM_016213) -46 NR_135855 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 6052 chr11 110565855 110565937 + 0 NA Intergenic Intergenic 135959 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 16629 chr2 169694413 169694567 + 0 NA promoter-TSS (NM_001085447) promoter-TSS (NM_001085447) 36 NM_001199286 493911 Hs.745233 NM_001008489 ENSG00000144362 PHOSPHO2 - phosphatase, orphan 2 protein-coding 21678 chr4 107824730 107824894 + 0 NA intron (NM_001136258, intron 1 of 6) intron (NM_001136258, intron 1 of 6) 247 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 28135 chr8 86002840 86002976 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 66789 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 24968 chr6 106325696 106325780 + 0 NA promoter-TSS (NM_001286107) promoter-TSS (NM_001286107) 82 NM_004849 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|hAPG5 autophagy related 5 protein-coding 8487 chr13 98583138 98583263 + 0 NA Intergenic Intergenic -6049 NM_001032296 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 2188 chr1 182186465 182186652 + 0 NA Intergenic Intergenic -124846 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 13221 chr18 3262281 3262290 + 0 NA promoter-TSS (NR_130145) promoter-TSS (NR_130145) 74 NR_130145 104968399 Hs.464472 NR_130143 ENSG00000264235 LOC104968399 - uncharacterized LOC104968399 ncRNA 22113 chr4 185471349 185471425 + 0 NA promoter-TSS (NR_133944) promoter-TSS (NR_133944) -44 NR_133944 105377590 Hs.563183 NR_133944 ENSG00000249679 LOC105377590 - uncharacterized LOC105377590 ncRNA 1778 chr1 153986317 153986437 + 0 NA promoter-TSS (NR_073553) promoter-TSS (NR_073553) 0 NR_073553 5872 Hs.151536 NM_002870 ENSG00000143545 RAB13 GIG4 RAB13, member RAS oncogene family protein-coding 15965 chr2 96208898 96208993 + 0 NA promoter-TSS (NM_020151) promoter-TSS (NM_020151) -110 NM_020151 56910 Hs.469331 NM_020151 ENSG00000084090 STARD7 GTT1 StAR related lipid transfer domain containing 7 protein-coding 30105 chr9 125233848 125233900 + 0 NA TTS (NM_005347) TTS (NM_005347) 7513 NM_005347 3309 Hs.743241 NM_005347 ENSG00000044574 HSPA5 BIP|GRP78|HEL-S-89n|MIF2 heat shock protein family A (Hsp70) member 5 protein-coding 18973 chr22 42300921 42301059 + 0 NA Intergenic Intergenic -17063 NM_005650 6942 Hs.475018 NM_005650 ENSG00000100207 TCF20 AR1|SPBP|TCF-20 transcription factor 20 protein-coding 18001 chr20 40279531 40279666 + 0 NA Intergenic Intergenic 275137 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 2339 chr1 200115701 200115822 + 0 NA intron (NM_001276464, intron 5 of 6) intron (NM_001276464, intron 5 of 6) 72936 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 8422 chr13 80086389 80086500 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 75367 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 6865 chr12 38392687 38392851 + 0 NA Intergenic Intergenic 76014 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 22734 chr5 74767103 74767249 + 0 NA non-coding (NR_104006, exon 1 of 20) non-coding (NR_104006, exon 1 of 20) 185 NM_001271665 10412 Hs.482526 NM_014886 ENSG00000164346 NSA2 CDK105|HCL-G1|HCLG1|HUSSY-29|HUSSY29|TINP1 NSA2, ribosome biogenesis homolog protein-coding 8385 chr13 76976748 76976756 + 0 NA Intergenic Intergenic -15172 NM_006493 1203 Hs.30213 NM_006493 ENSG00000102805 CLN5 NCL ceroid-lipofuscinosis, neuronal 5 protein-coding 10254 chr15 63121708 63121900 + 0 NA promoter-TSS (NM_171846) promoter-TSS (NM_171846) 4 NM_001288585 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 10603 chr15 84930061 84930171 + 0 NA intron (NM_001287761, intron 11 of 14) intron (NM_001287761, intron 11 of 14) 45455 NM_001287761 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 20287 chr3 141441535 141441639 + 0 NA intron (NM_001080412, intron 7 of 7) intron (NM_001080412, intron 7 of 7) -45460 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 30218 chr9 129111198 129111240 + 0 NA promoter-TSS (NM_001271832) promoter-TSS (NM_001271832) -95 NM_178003 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 19616 chr3 63625413 63625517 + 0 NA Intergenic Intergenic -27203 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 15197 chr2 25719686 25719790 + 0 NA Intergenic Intergenic -46091 NM_033148 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 22374 chr5 35925044 35925148 + 0 NA intron (NM_144647, intron 1 of 4) intron (NM_144647, intron 1 of 4) 13539 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 19839 chr3 108953364 108953468 + 0 NA intron (NM_005459, intron 1 of 3) intron (NM_005459, intron 1 of 3) 414 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 7177 chr12 58310948 58311052 + 0 NA Intergenic Intergenic 223108 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LOC105369785 - uncharacterized LOC105369785 ncRNA 2901 chr1 228809679 228809783 + 0 NA Intergenic MER74A|LTR|ERVL 74654 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 27150 chr7 142808860 142808964 + 0 NA Intergenic Intergenic 37969 NR_130149 5645 Hs.449281 NM_002770 ENSG00000275896 PRSS2 TRY2|TRY8|TRYP2 protease, serine 2 protein-coding 24106 chr6 16277458 16277562 + 0 NA intron (NM_006877, intron 5 of 8) intron (NM_006877, intron 5 of 8) 38930 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 13718 chr18 63736995 63737124 + 0 NA Intergenic Intergenic -15988 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 1381 chr1 98324078 98324151 + 0 NA Intergenic MLT2F|LTR|ERVL 113403 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 15597 chr2 58289189 58289293 + 0 NA Intergenic MSTB|LTR|ERVL-MaLR -47861 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG Fanconi anemia complementation group L protein-coding 30518 chrX 15565276 15565380 + 0 NA intron (NM_021804, intron 17 of 18) intron (NM_021804, intron 17 of 18) 36741 NM_021804 59272 Hs.178098 NM_021804 ENSG00000130234 ACE2 ACEH angiotensin I converting enzyme 2 protein-coding 3735 chr10 60123327 60123466 + 0 NA intron (NM_020987, intron 25 of 43) intron (NM_020987, intron 25 of 43) 17620 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 17043 chr2 212539258 212539362 + 0 NA promoter-TSS (NM_005235) promoter-TSS (NM_005235) -682 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 17947 chr20 36236354 36236458 + 0 NA promoter-TSS (NM_001271874) promoter-TSS (NM_001271874) -11 NM_015511 25980 Hs.11314 NM_015511 ENSG00000131043 AAR2 C20orf4|CGI-23 AAR2 splicing factor homolog protein-coding 14825 chr19 55654372 55654485 + 0 NA 5' UTR (NM_001012478, exon 1 of 12) 5' UTR (NM_001012478, exon 1 of 12) 378 NM_001012478 11338 Hs.528007 NM_007279 ENSG00000063244 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 15492 chr2 46909890 46909897 + 0 NA intron (NM_001171508, intron 1 of 3) intron (NM_001171508, intron 1 of 3) 5975 NM_139279 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 17922 chr20 35318582 35318748 + 0 NA intron (NM_018244, intron 7 of 9) intron (NM_018244, intron 7 of 9) -26243 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 7828 chr12 123365277 123365394 + 0 NA promoter-TSS (NR_107039) promoter-TSS (NR_107039) -126 NM_001167856 55206 Hs.7012 NM_018183 ENSG00000139697 SBNO1 MOP3|Sno strawberry notch homolog 1 protein-coding 28132 chr8 85854566 85854670 + 0 NA Intergenic MLT2B3|LTR|ERVL -26676 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 17809 chr20 25136854 25136958 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR 11087 NR_027093 284798 Hs.334934 NR_027091 ENSG00000230725 LOC284798 - uncharacterized LOC284798 ncRNA 410 chr1 26177351 26177484 + 0 NA promoter-TSS (NM_001297647) promoter-TSS (NM_001297647) -73 NM_006314 10256 Hs.16232 NM_006314 ENSG00000142675 CNKSR1 CNK|CNK1 connector enhancer of kinase suppressor of Ras 1 protein-coding 7920 chr12 132908657 132908761 + 0 NA Intergenic CpG 20867 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 18480 chr21 33079225 33079271 + 0 NA Intergenic Intergenic 9104 NM_138983 116448 Hs.56663 NM_138983 ENSG00000184221 OLIG1 BHLHB6|BHLHE21 oligodendrocyte transcription factor 1 protein-coding 3019 chr1 235908902 235909077 + 0 NA Intergenic Intergenic -25281 NM_001301365 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 12719 chr17 55238430 55238555 + 0 NA Intergenic CpG -26468 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF, PAR bZIP transcription factor protein-coding 28319 chr8 101004144 101004307 + 0 NA Intergenic MIRb|SINE|MIR -47829 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 6286 chr11 125514621 125514725 + 0 NA Intergenic L1MB7|LINE|L1 -18363 NM_022549 9638 Hs.224008 NM_005103 ENSG00000149557 FEZ1 UNC-76 fasciculation and elongation protein zeta 1 protein-coding 19830 chr3 108091119 108091223 + 0 NA promoter-TSS (NM_001777) promoter-TSS (NM_001777) -83 NM_001777 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 4637 chr10 132532871 132533020 + 0 NA Intergenic Intergenic -4834 NM_005539 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 12823 chr17 62824872 62824976 + 0 NA intron (NR_135634, intron 1 of 1) MIR3|SINE|MIR 16422 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 LOC101927877 - uncharacterized LOC101927877 ncRNA 22801 chr5 81769213 81769317 + 0 NA Intergenic Intergenic -18012 NM_001345886 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 11521 chr16 68142461 68142565 + 0 NA intron (NM_004555, intron 3 of 10) AluSx1|SINE|Alu 57147 NM_004555 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NFAT4|NFATX nuclear factor of activated T-cells 3 protein-coding 11683 chr16 78099368 78099534 + 0 NA promoter-TSS (NR_120436) promoter-TSS (NR_120436) 38 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 16013 chr2 99559247 99559351 + 0 NA intron (NM_001025108, intron 20 of 23) intron (NM_001025108, intron 20 of 23) -69243 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 9565 chr14 92121654 92121758 + 0 NA promoter-TSS (NM_001322270) promoter-TSS (NM_001322270) 103 NM_004545 4707 Hs.183435 NM_004545 ENSG00000183648 NDUFB1 CI-MNLL|CI-SGDH|MNLL NADH:ubiquinone oxidoreductase subunit B1 protein-coding 9009 chr14 52695551 52695686 + 0 NA 5' UTR (NM_014584, exon 1 of 16) 5' UTR (NM_014584, exon 1 of 16) 313 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 19574 chr3 56924026 56924123 + 0 NA intron (NM_001128615, intron 3 of 12) intron (NM_001128615, intron 3 of 12) -7603 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 1130 chr1 75672905 75673009 + 0 NA Intergenic L1M1|LINE|L1 -51390 NM_000016 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase, C-4 to C-12 straight chain protein-coding 30902 chrX 104166301 104166508 + 0 NA promoter-TSS (NM_207318) promoter-TSS (NM_207318) -71 NM_207318 139231 Hs.496535 NM_207318 ENSG00000123575 FAM199X CXorf39 family with sequence similarity 199, X-linked protein-coding 27400 chr8 11889411 11889560 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR -21335 NM_147782 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB cathepsin B protein-coding 13321 chr18 23453108 23453264 + 0 NA 5' UTR (NM_003831, exon 1 of 13) 5' UTR (NM_003831, exon 1 of 13) 363 NM_003831 8780 Hs.445511 NM_003831 ENSG00000101782 RIOK3 SUDD RIO kinase 3 protein-coding 189 chr1 12619184 12619254 + 0 NA Intergenic Intergenic -1488 NM_004753 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 4918 chr11 16604966 16605053 + 0 NA Intergenic CpG -128621 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box 6 protein-coding 6216 chr11 120952898 120953002 + 0 NA exon (NM_014619, exon 15 of 21) exon (NM_014619, exon 15 of 21) 5089 NR_133004 101929208 Hs.662310 NR_133004 LOC101929208 - uncharacterized LOC101929208 ncRNA 20598 chr3 168985052 168985156 + 0 NA Intergenic L1MA4|LINE|L1 83159 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 2330 chr1 199613308 199613412 + 0 NA Intergenic MER45A|DNA|hAT-Tip100 -414242 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 19043 chr22 49853447 49853515 + 0 NA promoter-TSS (NM_014838) promoter-TSS (NM_014838) -368 NM_014838 9889 Hs.475208 NM_014838 ENSG00000100426 ZBED4 - zinc finger BED-type containing 4 protein-coding 19549 chr3 52670854 52670896 + 0 NA intron (NM_181042, intron 4 of 29) FAM|SINE|Alu 14905 NM_181042 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 17544 chr20 6590891 6591010 + 0 NA Intergenic Intergenic 164218 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility candidate 20 (non-protein coding) ncRNA 7548 chr12 103575469 103575573 + 0 NA Intergenic Intergenic -11770 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 6169 chr11 118791150 118791191 + 0 NA promoter-TSS (NM_001257191) promoter-TSS (NM_001257191) 93 NM_004397 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 87 chr1 6579909 6580013 + 0 NA promoter-TSS (NM_001278648) promoter-TSS (NM_001278648) -30 NM_001278648 3104 Hs.502330 NM_005341 ENSG00000204859 ZBTB48 HKR3|ZNF855|pp9964 zinc finger and BTB domain containing 48 protein-coding 16888 chr2 197813288 197813392 + 0 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 8638 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 protein-coding 4339 chr10 110364616 110364720 + 0 NA Intergenic Intergenic -59719 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 28858 chr8 144902089 144902173 + 0 NA promoter-TSS (NM_001109689) promoter-TSS (NM_001109689) -670 NM_021061 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 21787 chr4 127881377 127881569 + 0 NA intron (NM_001190801, intron 1 of 15) CpG 229 NM_001190801 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 31076 chrX 133297357 133297461 + 0 NA Intergenic Intergenic -79061 NM_016521 51270 Hs.142908 NM_016521 ENSG00000183434 TFDP3 CT30|DP4|HCA661 transcription factor Dp family member 3 protein-coding 23516 chr5 150473069 150473199 + 0 NA Intergenic Intergenic 12858 NR_105061 102546298 Hs.570892 NR_105061 ENSG00000254333 NDST1-AS1 - NDST1 antisense RNA 1 ncRNA 3796 chr10 67818406 67818510 + 0 NA intron (NM_201262, intron 2 of 2) intron (NM_201262, intron 2 of 2) 19721 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 30783 chrX 65932772 65932917 + 0 NA Intergenic LTR10F|LTR|ERV1 -86026 NR_029637 407008 NR_029637 ENSG00000274536 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 22001 chr4 169345490 169345594 + 0 NA Intergenic Intergenic -74444 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 21576 chr4 89661611 89661715 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -174738 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 221 chr1 16143907 16144056 + 0 NA intron (NM_001329090, intron 2 of 15) intron (NM_001329090, intron 2 of 15) 12128 NM_001329090 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 26351 chr7 66602301 66602428 + 0 NA Intergenic Intergenic -9957 NR_111973 493754 Hs.732409 NR_002933 GS1-124K5.11 - RAB guanine nucleotide exchange factor 1 pseudogene pseudo 25578 chr7 3980376 3980480 + 0 NA intron (NM_152744, intron 13 of 44) intron (NM_152744, intron 13 of 44) -149257 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 21741 chr4 119113338 119113442 + 0 NA Intergenic Intergenic -22394 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 19608 chr3 58998621 58998799 + 0 NA intron (NR_110820, intron 2 of 2) intron (NR_110820, intron 2 of 2) 51279 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 4486 chr10 119686874 119686978 + 0 NA Intergenic Intergenic 35556 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 24949 chr6 100297386 100297472 + 0 NA Intergenic Intergenic 166246 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 23245 chr5 134370994 134371132 + 0 NA promoter-TSS (NM_001300853) promoter-TSS (NM_001300853) -16 NM_001300853 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 14442 chr19 39445497 39445629 + 0 NA promoter-TSS (NM_001111020) promoter-TSS (NM_001111020) 17 NM_001111020 6829 Hs.631604 NM_003169 ENSG00000196235 SUPT5H SPT5|SPT5H|Tat-CT1 SPT5 homolog, DSIF elongation factor subunit protein-coding 24031 chr6 10838430 10838590 + 0 NA promoter-TSS (NR_134936) promoter-TSS (NR_134936) -27 NR_134936 4117 Hs.446125 NM_005906 ENSG00000111837 MAK RP62 male germ cell associated kinase protein-coding 30308 chr9 133133807 133133975 + 0 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) -2734 NM_001271774 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 22615 chr5 61805162 61805266 + 0 NA Intergenic Intergenic -69516 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 7172 chr12 57899118 57899231 + 0 NA Intergenic Intergenic 36990 NR_038269 100506844 Hs.90286 NR_038269 LOC100506844 - uncharacterized LOC100506844 ncRNA 30557 chrX 22134841 22134945 + 0 NA intron (NM_001282754, intron 12 of 20) MER5A|DNA|hAT-Charlie 38090 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 29064 chr9 35071974 35072078 + 0 NA intron (NM_007126, intron 1 of 16) CpG 716 NM_007126 7415 Hs.529782 NM_007126 ENSG00000165280 VCP ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 valosin containing protein protein-coding 5246 chr11 47248789 47248931 + 0 NA promoter-TSS (NM_001302489) promoter-TSS (NM_001302489) -13 NM_001302490 53 Hs.532492 NM_001610 ENSG00000134575 ACP2 LAP acid phosphatase 2, lysosomal protein-coding 20816 chr3 184261596 184261700 + 0 NA promoter-TSS (NM_033259) promoter-TSS (NM_033259) -185 NM_033259 94032 Hs.585003 NM_033259 ENSG00000163888 CAMK2N2 CAM-KIIN|CAMKIIN calcium/calmodulin dependent protein kinase II inhibitor 2 protein-coding 14632 chr19 47743687 47743791 + 0 NA TTS (NM_014601) TTS (NM_014601) -1797 NM_015710 29997 Hs.421907 NM_015710 ENSG00000105373 GLTSCR2 PICT-1|PICT1 glioma tumor suppressor candidate region gene 2 protein-coding 22541 chr5 55176519 55176623 + 0 NA Intergenic CpG -3394 NM_001170402 166979 Hs.669184 NM_152623 ENSG00000164287 CDC20B G6VTS76519 cell division cycle 20B protein-coding 17980 chr20 38201468 38201540 + 0 NA Intergenic Intergenic -34926 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 5912 chr11 95924047 95924176 + 0 NA promoter-TSS (NM_001243571) promoter-TSS (NM_001243571) 96 NM_001243571 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 2952 chr1 232335006 232335015 + 0 NA Intergenic Intergenic 180598 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 10267 chr15 64093884 64094010 + 0 NA promoter-TSS (NM_032231) promoter-TSS (NM_032231) 61 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 FAM96A CIA2A family with sequence similarity 96 member A protein-coding 28242 chr8 95773151 95773259 + 0 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 175143 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 25688 chr7 12544714 12544865 + 0 NA Intergenic LTR37B|LTR|ERV1 -25788 NM_001112706 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 25456 chr6 163312083 163312083 + 0 NA intron (NR_028390, intron 5 of 5) intron (NR_028390, intron 5 of 5) 12390 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 1440 chr1 107677801 107677905 + 0 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 10651 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 21629 chr4 101347450 101347554 + 0 NA promoter-TSS (NM_000944) promoter-TSS (NM_000944) -31 NM_000944 5530 Hs.435512 NM_000944 ENSG00000138814 PPP3CA CALN|CALNA|CALNA1|CCN1|CNA1|PPP2B protein phosphatase 3 catalytic subunit alpha protein-coding 15696 chr2 66435027 66435165 + 0 NA promoter-TSS (NM_002398) promoter-TSS (NM_002398) -304 NM_002398 4211 Hs.526754 NM_002398 ENSG00000143995 MEIS1 - Meis homeobox 1 protein-coding 14187 chr19 14525891 14525995 + 0 NA intron (NM_001313964, intron 2 of 3) intron (NM_001313964, intron 2 of 3) 3379 NM_001313964 3337 Hs.515210 NM_006145 ENSG00000132002 DNAJB1 HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 DnaJ heat shock protein family (Hsp40) member B1 protein-coding 22386 chr5 36876675 36876828 + 0 NA promoter-TSS (NR_046262) promoter-TSS (NR_046262) -8 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL, cohesin loading factor protein-coding 19185 chr3 13850402 13850506 + 0 NA intron (NM_004625, intron 3 of 3) intron (NM_004625, intron 3 of 3) 29667 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A - Wnt family member 7A protein-coding 1814 chr1 155262263 155262379 + 0 NA promoter-TSS (NM_052837) promoter-TSS (NM_052837) 64 NM_052837 10067 Hs.200600 NM_005698 ENSG00000116521 SCAMP3 C1orf3 secretory carrier membrane protein 3 protein-coding 11495 chr16 67247519 67247676 + 0 NA promoter-TSS (NM_001318202) promoter-TSS (NM_001318202) -75 NM_001318202 29109 Hs.95231 NM_013241 ENSG00000135723 FHOD1 FHOS formin homology 2 domain containing 1 protein-coding 25290 chr6 146905441 146905651 + 0 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -101722 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 10737 chr15 93073095 93073199 + 0 NA promoter-TSS (NM_001166286) promoter-TSS (NM_001166286) 13 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 26260 chr7 50450310 50450414 + 0 NA promoter-TSS (NM_001042762) promoter-TSS (NM_001042762) 44 NM_001287496 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 5896 chr11 95119630 95119661 + 0 NA intron (NM_015036, intron 1 of 1) L1MA2|LINE|L1 29835 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 28674 chr8 130000083 130000187 + 0 NA intron (NR_046361, intron 1 of 13) intron (NR_046361, intron 1 of 13) 8318 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 25524 chr7 813315 813440 + 0 NA Intergenic CpG -2180 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 15286 chr2 29921684 29921822 + 0 NA promoter-TSS (NM_004304) promoter-TSS (NM_004304) -142 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 30382 chr9 137240981 137241231 + 0 NA promoter-TSS (NM_006088) promoter-TSS (NM_006088) -153 NM_006088 10383 Hs.433615 NM_006088 ENSG00000188229 TUBB4B Beta2|TUBB2|TUBB2C tubulin beta 4B class IVb protein-coding 5385 chr11 62771292 62771427 + 0 NA promoter-TSS (NM_006473) promoter-TSS (NM_006473) 56 NM_006473 10629 Hs.714400 NM_006473 ENSG00000162227 TAF6L PAF65A TATA-box binding protein associated factor 6 like protein-coding 22263 chr5 15008630 15008792 + 0 NA Intergenic Intergenic -136933 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 10893 chr16 2603295 2603444 + 0 NA promoter-TSS (NR_015441) promoter-TSS (NR_015441) -15 NR_015441 652276 Hs.720448 NR_015441 ENSG00000215154 LOC652276 - potassium channel tetramerization domain containing 5 pseudogene pseudo 21574 chr4 89111457 89111582 + 0 NA Intergenic CpG -1298 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 15429 chr2 43010773 43010877 + 0 NA Intergenic Intergenic 28718 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 28082 chr8 80367046 80367173 + 0 NA Intergenic Intergenic -118510 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 16902 chr2 200306453 200306623 + 0 NA promoter-TSS (NM_001100423) promoter-TSS (NM_001100423) -95 NM_001100423 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 11966 chr17 4721665 4721769 + 0 NA TTS (NM_001257329) TTS (NM_001257329) -9691 NM_001001683 400569 Hs.513885 NM_001001683 ENSG00000161920 MED11 HSPC296 mediator complex subunit 11 protein-coding 13285 chr18 12884189 12884316 + 0 NA promoter-TSS (NM_002828) promoter-TSS (NM_002828) 83 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase, non-receptor type 2 protein-coding 16336 chr2 132416505 132416587 + 0 NA promoter-TSS (NM_001508) promoter-TSS (NM_001508) -28 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 31042 chrX 124555202 124555306 + 0 NA intron (NM_014253, intron 14 of 30) L2c|LINE|L2 208972 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 29558 chr9 92764922 92765092 + 0 NA promoter-TSS (NM_001003800) promoter-TSS (NM_001003800) -206 NM_001003800 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|bA526D8.1 BICD cargo adaptor 2 protein-coding 14967 chr2 9474694 9474857 + 0 NA promoter-TSS (NM_001320858) promoter-TSS (NM_001320858) -224 NM_001320858 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate-hydrolyzing esterase 1 homolog protein-coding 16790 chr2 186693920 186694024 + 0 NA promoter-TSS (NM_177454) promoter-TSS (NM_177454) -90 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 3448 chr10 24815088 24815192 + 0 NA Intergenic Intergenic -91472 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 17277 chr2 231877951 231878055 + 0 NA Intergenic Intergenic 14295 NR_031717 100302126 NR_031717 ENSG00000222246 MIR1471 MIRN1471|hsa-mir-1471 microRNA 1471 ncRNA 25653 chr7 7354817 7354981 + 0 NA Intergenic Intergenic 99745 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 16923 chr2 201257605 201257651 + 0 NA promoter-TSS (NR_111983) promoter-TSS (NR_111983) -403 NM_001080125 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 6136 chr11 117098530 117098634 + 0 NA promoter-TSS (NM_001281748) promoter-TSS (NM_001281748) -167 NM_001281748 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SIK-3 SIK family kinase 3 protein-coding 8842 chr14 34462273 34462377 + 0 NA promoter-TSS (NM_138288) promoter-TSS (NM_138288) -63 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 17860 chr20 32040665 32040815 + 0 NA Intergenic Intergenic -11448 NM_001172131 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 27122 chr7 140924170 140924376 + 0 NA intron (NM_004333, intron 1 of 17) CpG 491 NM_004333 673 Hs.550061 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 25419 chr6 158720591 158720695 + 0 NA intron (NM_001318745, intron 7 of 14) intron (NM_001318745, intron 7 of 14) 44110 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 18214 chr20 51366253 51366357 + 0 NA Intergenic Intergenic 86672 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 22757 chr5 76867831 76867977 + 0 NA intron (NM_130772, intron 1 of 4) intron (NM_130772, intron 1 of 4) 17903 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 26742 chr7 102393522 102393674 + 0 NA intron (NR_038967, intron 4 of 8) LTR35|LTR|ERV1 -2759 NM_024653 79706 Hs.722104 NM_024653 ENSG00000128563 PRKRIP1 C114|KRBOX3 PRKR interacting protein 1 (IL11 inducible) protein-coding 6255 chr11 123580686 123580858 + 0 NA intron (NM_001286563, intron 3 of 20) intron (NM_001286563, intron 3 of 20) 20510 NM_001286564 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 26705 chr7 100539057 100539167 + 0 NA promoter-TSS (NM_006076) promoter-TSS (NM_006076) -99 NM_006076 3268 Hs.521083 NM_006076 ENSG00000106351 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 12870 chr17 65750701 65750805 + 0 NA intron (NM_001199165, intron 21 of 26) intron (NM_001199165, intron 21 of 26) 75790 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 15065 chr2 14751701 14751805 + 0 NA Intergenic MIR3|SINE|MIR 116662 NM_001291410 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 21925 chr4 153677220 153677238 + 0 NA intron (NR_134873, intron 2 of 2) intron (NR_134873, intron 2 of 2) -7023 NM_001318789 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 25363 chr6 152983087 152983252 + 0 NA promoter-TSS (NM_012177) promoter-TSS (NM_012177) -87 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 1911 chr1 160285093 160285249 + 0 NA promoter-TSS (NM_002857) promoter-TSS (NM_002857) -20 NR_036493 5824 Hs.517232 NM_002857 ENSG00000162735 PEX19 D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1 peroxisomal biogenesis factor 19 protein-coding 17994 chr20 38926264 38926383 + 0 NA promoter-TSS (NM_030919) promoter-TSS (NM_030919) 11 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 18836 chr22 35629961 35630097 + 0 NA Intergenic Intergenic -6675 NM_203377 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 11354 chr16 53130709 53130794 + 0 NA intron (NM_025134, intron 1 of 38) CpG -25175 NM_001308319 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 30152 chr9 127699415 127699519 + 0 NA Intergenic CpG -7525 NM_001012502 286207 Hs.652519 NM_001012502 ENSG00000160401 CFAP157 C9orf117 cilia and flagella associated protein 157 protein-coding 21639 chr4 102501252 102501368 + 0 NA promoter-TSS (NM_001165412) promoter-TSS (NM_001165412) -19 NM_003998 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 29983 chr9 116549456 116549562 + 0 NA intron (NR_033973, intron 8 of 11) intron (NR_033973, intron 8 of 11) 45226 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 9256 chr14 67694859 67694981 + 0 NA intron (NM_016026, intron 1 of 6) intron (NM_016026, intron 1 of 6) 873 NM_016026 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) protein-coding 5004 chr11 20387351 20387514 + 0 NA promoter-TSS (NM_001145166) promoter-TSS (NM_001145166) -98 NM_001145166 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 21206 chr4 15906254 15906262 + 0 NA Intergenic Intergenic 32482 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 24781 chr6 71420872 71420976 + 0 NA promoter-TSS (NR_026807) promoter-TSS (NR_026807) -103 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 8692 chr14 21916047 21916151 + 0 NA Intergenic Intergenic -245082 NM_001317107 26687 NM_001317107 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 19370 chr3 39000171 39000369 + 0 NA Intergenic Intergenic -46619 NM_001287223 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 28902 chr9 5628791 5628852 + 0 NA promoter-TSS (NM_001135920) promoter-TSS (NM_001135920) -298 NM_001135920 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 3010 chr1 235253301 235253405 + 0 NA intron (NR_135074, intron 5 of 24) MER20|DNA|hAT-Charlie -63237 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 9161 chr14 61668343 61668447 + 0 NA Intergenic L2a|LINE|L2 -27006 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 11417 chr16 57245010 57245119 + 0 NA promoter-TSS (NM_012106) promoter-TSS (NM_012106) -62 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 23446 chr5 146878747 146878851 + 0 NA promoter-TSS (NM_001271948) promoter-TSS (NM_001271948) -14 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 28430 chr8 109974469 109974573 + 0 NA 5' UTR (NM_014379, exon 2 of 4) 5' UTR (NM_014379, exon 2 of 4) 1326 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 10449 chr15 74799858 74800015 + 0 NA intron (NM_004383, intron 5 of 12) intron (NM_004383, intron 5 of 12) -11179 NR_039738 100616183 NR_039738 ENSG00000264386 MIR4513 - microRNA 4513 ncRNA 28765 chr8 140597165 140597277 + 0 NA intron (NM_001164623, intron 1 of 17) intron (NM_001164623, intron 1 of 17) 38326 NM_012154 27161 Hs.743313 NM_012154 ENSG00000123908 AGO2 EIF2C2|Q10 argonaute 2, RISC catalytic component protein-coding 26559 chr7 88291874 88291996 + 0 NA intron (NM_001205315, intron 1 of 5) X7C_LINE|LINE|CR1 14978 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 22750 chr5 76785609 76785735 + 0 NA Intergenic Intergenic -33305 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 17940 chr20 35884120 35884168 + 0 NA intron (NM_016436, intron 9 of 17) intron (NM_016436, intron 9 of 17) 70482 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 15187 chr2 25129327 25129333 + 0 NA intron (NM_014971, intron 6 of 22) (CGGGGG)n|Simple_repeat|Simple_repeat 39521 NM_000939 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|POC proopiomelanocortin protein-coding 27357 chr8 8625882 8626014 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -76208 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 26552 chr7 88141189 88141314 + 0 NA intron (NM_001324418, intron 14 of 31) LTR72|LTR|ERV1 -75409 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 7810 chr12 122887705 122887791 + 0 NA intron (NM_024667, intron 1 of 3) L2b|LINE|L2 8417 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B, ESCRT-I subunit protein-coding 30126 chr9 126794105 126794254 + 0 NA Intergenic Intergenic -10827 NM_014007 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 20330 chr3 143971811 143971829 + 0 NA promoter-TSS (NM_173552) promoter-TSS (NM_173552) 22 NM_173552 205428 Hs.288954 NM_173552 ENSG00000181744 C3orf58 DIA1|GoPro49|HASF chromosome 3 open reading frame 58 protein-coding 7068 chr12 53493108 53493241 + 0 NA intron (NM_006301, intron 1 of 14) CpG 6486 NM_006301 7786 Hs.713539 NM_006301 ENSG00000139625 MAP3K12 DLK|MEKK12|MUK|ZPK|ZPKP1 mitogen-activated protein kinase kinase kinase 12 protein-coding 5485 chr11 65570344 65570448 + 0 NA promoter-TSS (NR_038923) promoter-TSS (NR_038923) 17 NR_038923 254100 Hs.595927 NR_038923 SSSCA1-AS1 - SSSCA1 antisense RNA 1 (head to head) ncRNA 18902 chr22 38755922 38756026 + 0 NA promoter-TSS (NM_001199580) promoter-TSS (NM_001199580) 45 NM_001199579 25777 Hs.517622 NM_015374 ENSG00000100242 SUN2 UNC84B Sad1 and UNC84 domain containing 2 protein-coding 13057 chr17 77286187 77286340 + 0 NA intron (NM_001293695, intron 1 of 10) intron (NM_001293695, intron 1 of 10) -1628 NM_001113492 10801 Hs.440932 NM_006640 ENSG00000184640 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 22589 chr5 59563099 59563231 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 23333 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 26588 chr7 92246470 92246591 + 0 NA promoter-TSS (NM_004912) promoter-TSS (NM_004912) 296 NM_019004 54467 Hs.83293 NM_019004 ENSG00000001629 ANKIB1 - ankyrin repeat and IBR domain containing 1 protein-coding 18968 chr22 42070830 42070955 + 0 NA promoter-TSS (NM_000262) promoter-TSS (NM_000262) -50 NM_000262 4668 Hs.75372 NM_000262 ENSG00000198951 NAGA D22S674|GALB alpha-N-acetylgalactosaminidase protein-coding 12773 chr17 58352320 58352347 + 0 NA promoter-TSS (NM_003168) promoter-TSS (NM_003168) -95 NR_073470 6827 Hs.439481 NM_003168 ENSG00000213246 SUPT4H1 SPT4|SPT4H|SUPT4H|Supt4a SPT4 homolog, DSIF elongation factor subunit protein-coding 3908 chr10 73956792 73956927 + 0 NA Intergenic Intergenic -34082 NM_001001791 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 bA417O11.3 chromosome 10 open reading frame 55 protein-coding 2595 chr1 210439497 210439509 + 0 NA intron (NM_001122834, intron 7 of 11) ERVL-B4-int|LTR|ERVL 110207 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 932 chr1 57831852 57831956 + 0 NA intron (NM_021080, intron 2 of 16) L2b|LINE|L2 -28639 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 12131 chr17 15963829 15963993 + 0 NA intron (NM_000676, intron 1 of 1) intron (NM_000676, intron 1 of 1) 18994 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 23222 chr5 132830058 132830206 + 0 NA intron (NM_001172700, intron 1 of 9) CpG 766 NM_001172700 134549 Hs.519574 NM_133456 ENSG00000164403 SHROOM1 APXL2 shroom family member 1 protein-coding 26795 chr7 107168632 107168736 + 0 NA promoter-TSS (NM_001244262) promoter-TSS (NM_001244262) -277 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 29834 chr9 109369464 109369568 + 0 NA Intergenic Intergenic 48267 NR_026918 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 14727 chr19 50836050 50836232 + 0 NA intron (NR_131203, intron 2 of 2) CpG -4618 NM_001277081 55554 Hs.567535 NM_017509 ENSG00000174562 KLK15 ACO|HSRNASPH kallikrein related peptidase 15 protein-coding 18473 chr21 32278960 32279064 + 0 NA promoter-TSS (NM_018944) promoter-TSS (NM_018944) 53 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 28784 chr8 141874259 141874405 + 0 NA Intergenic Intergenic -88019 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 10555 chr15 81266497 81266601 + 0 NA intron (NM_172217, intron 3 of 17) intron (NM_172217, intron 3 of 17) -30364 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 15582 chr2 55862842 55862946 + 0 NA Intergenic Intergenic 61269 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin like extracellular matrix protein 1 protein-coding 27897 chr8 58850346 58850497 + 0 NA intron (NM_014729, intron 4 of 8) MER74B|LTR|ERVL -190576 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 24911 chr6 89829750 89829899 + 0 NA promoter-TSS (NM_001137667) promoter-TSS (NM_001137667) -76 NM_012115 9994 Hs.558218 NM_012115 ENSG00000118412 CASP8AP2 CED-4|FLASH|RIP25 caspase 8 associated protein 2 protein-coding 21511 chr4 82429565 82429647 + 0 NA promoter-TSS (NM_001292017) promoter-TSS (NM_001292017) 619 NM_031372 9987 Hs.527105 NM_005463 ENSG00000152795 HNRNPDL HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|laAUF1 heterogeneous nuclear ribonucleoprotein D like protein-coding 16655 chr2 172172698 172172722 + 0 NA Intergenic CpG 69704 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 4871 chr11 13462415 13462519 + 0 NA intron (NM_032320, intron 1 of 8) intron (NM_032320, intron 1 of 8) 830 NM_032320 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 20663 chr3 172520490 172520594 + 0 NA intron (NM_001190943, intron 1 of 1) intron (NM_001190943, intron 1 of 1) 2933 NM_001190943 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 10124 chr15 52652026 52652130 + 0 NA promoter-TSS (NM_001286495) promoter-TSS (NM_001286495) -28 NM_001286495 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 26944 chr7 123929389 123929464 + 0 NA intron (NM_001174046, intron 1 of 4) MER34-int|LTR|ERV1 3571 NM_001174046 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 22483 chr5 44875707 44875864 + 0 NA Intergenic LTR78|LTR|ERV1 66860 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 19918 chr3 113867581 113867685 + 0 NA intron (NM_017577, intron 2 of 17) L1M4a2|LINE|L1 28799 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 3499 chr10 29668867 29668963 + 0 NA intron (NM_003174, intron 2 of 35) intron (NM_003174, intron 2 of 35) -33943 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 12171 chr17 17840406 17840479 + 0 NA Intergenic CpG -3431 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 3838 chr10 70387667 70387811 + 0 NA Intergenic MER113|DNA|hAT-Charlie -5089 NM_001278211 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 31201 chrX 155026835 155026921 + 0 NA promoter-TSS (NM_023934) promoter-TSS (NM_023934) 89 NM_023934 65991 Hs.356050 NM_023934 ENSG00000165775 FUNDC2 DC44|HCBP6|HCC3|PD03104 FUN14 domain containing 2 protein-coding 29761 chr9 106794316 106794440 + 0 NA Intergenic L2c|LINE|L2 -68719 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 5370 chr11 62573990 62574120 + 0 NA promoter-TSS (NM_001404) promoter-TSS (NM_001404) -67 NM_001404 1937 Hs.144835 NM_001404 ENSG00000254772 EEF1G EF1G|GIG35 eukaryotic translation elongation factor 1 gamma protein-coding 8052 chr13 30346533 30346637 + 0 NA intron (NR_024464, intron 4 of 4) intron (NR_024464, intron 4 of 4) 27329 NR_024464 100188949 Hs.439791 NR_024464 ENSG00000238121 LINC00426 - long intergenic non-protein coding RNA 426 ncRNA 30417 chrUn_GL000224v1 3862 3954 + 0 NA Intergenic Intergenic -98595 NR_135481 100505874 Hs.559790 NR_135481 LOC100505874 - uncharacterized LOC100505874 ncRNA 5652 chr11 73761278 73761436 + 0 NA promoter-TSS (NM_002869) promoter-TSS (NM_002869) -201 NM_002869 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 17769 chr20 22922311 22922313 + 0 NA Intergenic Intergenic -113108 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 27374 chr8 10087246 10087350 + 0 NA intron (NM_012331, intron 1 of 5) L2c|LINE|L2 -8254 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 11331 chr16 50548221 50548276 + 0 NA promoter-TSS (NM_033119) promoter-TSS (NM_033119) -82 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 naked cuticle homolog 1 protein-coding 30473 chrX 9327937 9328041 + 0 NA Intergenic Intergenic -135306 NM_001139468 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1X-linked protein-coding 26265 chr7 50664711 50664815 + 0 NA intron (NM_001001549, intron 4 of 14) intron (NM_001001549, intron 4 of 14) 40538 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 8311 chr13 59533717 59533821 + 0 NA Intergenic Intergenic -478949 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 3831 chr10 70170555 70170631 + 0 NA promoter-TSS (NM_001142648) promoter-TSS (NM_001142648) -64 NM_001142648 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 11490 chr16 67174260 67174454 + 0 NA exon (NM_001276307, exon 4 of 6) exon (NM_001276307, exon 4 of 6) 504 NM_003946 8996 Hs.513667 NM_003946 ENSG00000140939 NOL3 ARC|FCM|MYP|NOP|NOP30 nucleolar protein 3 protein-coding 22093 chr4 184537499 184537650 + 0 NA Intergenic L1M6|LINE|L1 -63002 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 15707 chr2 67290830 67290879 + 0 NA Intergenic Intergenic -75535 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 30313 chr9 133180058 133180209 + 0 NA Intergenic Intergenic -16188 NM_001288573 26301 Hs.495419 NM_021996 ENSG00000148288 GBGT1 A3GALNT|FS|UNQ2513 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 protein-coding 27277 chr7 156640593 156640606 + 0 NA promoter-TSS (NM_030936) promoter-TSS (NM_030936) 55 NR_026865 129790 Hs.647014 NM_032625 ENSG00000182648 C7orf13 MY040 chromosome 7 open reading frame 13 ncRNA 22128 chr4 189881336 189881407 + 0 NA promoter-TSS (NR_132380).2 promoter-TSS (NR_132380).2 -144 NR_132380 105377617 Hs.662618 NR_132380 ENSG00000250666 LINC01596 - long intergenic non-protein coding RNA 1596 ncRNA 20312 chr3 142723903 142723982 + 0 NA promoter-TSS (NM_001251845) promoter-TSS (NM_001251845) -482 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 12142 chr17 16438797 16438849 + 0 NA promoter-TSS (NR_027179) promoter-TSS (NR_027179) -164 NR_045028 125144 Hs.368934 NM_152350 ENSG00000175061 LRRC75A-AS1 C17orf45|C17orf76-AS1|FAM211A-AS1|NCRNA00188|TSAP19 LRRC75A antisense RNA 1 ncRNA 4655 chr11 364495 364643 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -5226 NM_178537 338707 Hs.148074 NM_178537 ENSG00000182272 B4GALNT4 - beta-1,4-N-acetyl-galactosaminyltransferase 4 protein-coding 14435 chr19 39031686 39031696 + 0 NA intron (NM_178820, intron 2 of 5) CpG 905 NM_178820 126433 Hs.187461 NM_178820 ENSG00000161243 FBXO27 FBG5|Fbx27 F-box protein 27 protein-coding 24885 chr6 85866026 85866130 + 0 NA Intergenic HERV3-int|LTR|ERV1 -187345 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2 small nucleolar RNA host gene 5 ncRNA 1995 chr1 165768879 165768990 + 0 NA promoter-TSS (NM_019026) promoter-TSS (NM_019026) 5 NR_125374 100147773 Hs.633824 NR_125374 LOC100147773 - uncharacterized LOC100147773 ncRNA 6686 chr12 15788463 15788567 + 0 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 1061 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 5972 chr11 102317286 102317430 + 0 NA promoter-TSS (NM_182962) promoter-TSS (NM_182962) -92 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 18876 chr22 37817732 37817822 + 0 NA TTS (NM_014291) TTS (NM_014291) -5605 NM_003614 8484 Hs.158353 NM_003614 ENSG00000128310 GALR3 - galanin receptor 3 protein-coding 18321 chr20 57718516 57718687 + 0 NA Intergenic CpG -7065 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 7778 chr12 121672516 121672620 + 0 NA Intergenic Intergenic -2914 NM_173855 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 30734 chrX 53071648 53071807 + 0 NA intron (NM_018969, intron 1 of 1) MER20B|DNA|hAT-Charlie -10633 NM_022117 64061 Hs.136164 NM_022117 ENSG00000184205 TSPYL2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX TSPY like 2 protein-coding 29799 chr9 108444731 108444869 + 0 NA Intergenic Intergenic 411195 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 4427 chr10 116888675 116888829 + 0 NA intron (NM_018330, intron 14 of 14) MLT2F|LTR|ERVL -38975 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 15674 chr2 64859420 64859500 + 0 NA intron (NR_110224, intron 1 of 4) intron (NR_110224, intron 1 of 4) 4171 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 10650 chr15 88897454 88897601 + 0 NA Intergenic Intergenic -1901 NM_001307952 145864 Hs.447530 NM_178232 ENSG00000140511 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 27486 chr8 19665459 19665668 + 0 NA intron (NR_024040, intron 1 of 9) intron (NR_024040, intron 1 of 9) 17020 NM_018371 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 17899 chr20 34363168 34363319 + 0 NA promoter-TSS (NM_001257138) promoter-TSS (NM_001257138) 8 NM_001324198 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 3901 chr10 73811889 73811986 + 0 NA promoter-TSS (NM_003635) promoter-TSS (NM_003635) -88 NM_001330107 8509 Hs.654758 NM_003635 ENSG00000166507 NDST2 HSST2|NST2 N-deacetylase and N-sulfotransferase 2 protein-coding 29072 chr9 35116919 35117053 + 0 NA Intergenic Intergenic -1014 NR_134455 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 22706 chr5 73031108 73031218 + 0 NA intron (NM_138782, intron 8 of 25) intron (NM_138782, intron 8 of 25) 75182 NM_001146032 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 11035 chr16 13307411 13307434 + 0 NA Intergenic Intergenic 405802 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 11282 chr16 46884181 46884335 + 0 NA promoter-TSS (NM_133443) promoter-TSS (NM_133443) -122 NM_133443 84706 Hs.460693 NM_133443 ENSG00000166123 GPT2 ALT2|GPT 2|MRT49 glutamic--pyruvic transaminase 2 protein-coding 26086 chr7 38858676 38858787 + 0 NA intron (NM_014396, intron 4 of 28) Tigger3b|DNA|TcMar-Tigger 50469 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41, HOPS complex subunit protein-coding 18579 chr21 43728513 43728631 + 0 NA intron (NM_003681, intron 1 of 10) intron (NM_003681, intron 1 of 10) 9475 NM_003681 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 14905 chr2 1140494 1140598 + 0 NA intron (NM_018968, intron 6 of 16) intron (NM_018968, intron 6 of 16) -189154 NR_136151 101060391 Hs.120377 NR_136151 LOC101060391 - uncharacterized LOC101060391 ncRNA 22971 chr5 106171298 106171402 + 0 NA Intergenic Intergenic 839664 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 9496 chr14 86683734 86683803 + 0 NA Intergenic L1MD1|LINE|L1 -222010 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 25852 chr7 23236057 23236169 + 0 NA Intergenic Intergenic -10584 NM_002510 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB glycoprotein nmb protein-coding 24417 chr6 33454394 33454529 + 0 NA promoter-TSS (NM_152735) promoter-TSS (NM_152735) -118 NM_152735 221504 Hs.591805 NM_152735 ENSG00000213588 ZBTB9 ZNF919 zinc finger and BTB domain containing 9 protein-coding 16756 chr2 180742971 180743075 + 0 NA intron (NR_104325, intron 3 of 5) intron (NR_104325, intron 3 of 5) 50919 NR_104320 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 2842 chr1 225922526 225922703 + 0 NA promoter-TSS (NR_106799) promoter-TSS (NR_106799) -472 NR_106799 102466270 NR_106799 ENSG00000143811 MIR6741 hsa-mir-6741 microRNA 6741 ncRNA 9284 chr14 69005929 69006033 + 0 NA Intergenic Intergenic 26299 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 14013 chr19 7099114 7099218 + 0 NA Intergenic CpG 29706 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 19077 chr3 4303319 4303384 + 0 NA promoter-TSS (NM_001276325) promoter-TSS (NM_001276325) 47 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 13036 chr17 76353905 76353906 + 0 NA 5' UTR (NM_001330503, exon 1 of 9) 5' UTR (NM_001330503, exon 1 of 9) 244 NM_002766 5635 Hs.77498 NM_002766 ENSG00000161542 PRPSAP1 PAP39 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding 2900 chr1 228648021 228648110 + 0 NA intron (NR_037962, intron 1 of 2) CpG -1907 NR_023367 100169756 NR_023367 ENSG00000199396 RNA5S5 RN5S5 RNA, 5S ribosomal 5 rRNA 21173 chr4 10032818 10032886 + 0 NA intron (NM_001001290, intron 1 of 12) MIRb|SINE|MIR 7396 NM_001001290 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 7981 chr13 24511634 24511738 + 0 NA intron (NM_006437, intron 1 of 33) intron (NM_006437, intron 1 of 33) 1124 NM_006437 143 Hs.744855 NM_006437 ENSG00000102699 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly(ADP-ribose) polymerase family member 4 protein-coding 22530 chr5 54330120 54330224 + 0 NA intron (NR_126379, intron 1 of 4) ERVL-E-int|LTR|ERVL 9228 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 19622 chr3 63912338 63912442 + 0 NA intron (NM_000333, intron 2 of 12) CpG 13991 NM_001177387 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7 ataxin 7 protein-coding 2695 chr1 217029378 217029482 + 0 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 47540 NM_001243509 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 4955 chr11 18313212 18313325 + 0 NA intron (NM_181508, intron 1 of 21) LTR23|LTR|ERV1 8906 NM_181508 11234 Hs.437599 NM_007216 ENSG00000110756 HPS5 AIBP63|BLOC2S2 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 protein-coding 12191 chr17 19000831 19000873 + 0 NA intron (NM_001039999, intron 2 of 5) intron (NM_001039999, intron 2 of 5) 3895 NM_001039999 644815 Hs.710727 NM_001039999 ENSG00000188522 FAM83G PAWS1 family with sequence similarity 83 member G protein-coding 11563 chr16 69529666 69529806 + 0 NA Intergenic Intergenic 36132 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 15555 chr2 54524317 54524421 + 0 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) -4853 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 17212 chr2 226799705 226799809 + 0 NA promoter-TSS (NM_005544) promoter-TSS (NM_005544) -967 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 30829 chrX 73577487 73577647 + 0 NA intron (NM_001300884, intron 2 of 4) intron (NM_001300884, intron 2 of 4) 14419 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 11846 chr16 89476492 89476643 + 0 NA intron (NM_001256182, intron 1 of 13) intron (NM_001256182, intron 1 of 13) 13994 NR_045839 29123 Hs.335003 NM_013275 ENSG00000167522 ANKRD11 ANCO-1|ANCO1|LZ16|T13 ankyrin repeat domain 11 protein-coding 10661 chr15 89243828 89243994 + 0 NA promoter-TSS (NM_001113378) promoter-TSS (NM_001113378) -52 NM_018193 55215 Hs.513126 NM_018193 ENSG00000140525 FANCI KIAA1794 Fanconi anemia complementation group I protein-coding 7 chr1 1024798 1024912 + 0 NA intron (NM_198576, intron 2 of 35) intron (NM_198576, intron 2 of 35) 4732 NM_001305275 375790 Hs.273330 NM_198576 ENSG00000188157 AGRN CMS8|CMSPPD agrin protein-coding 1793 chr1 154730386 154730552 + 0 NA intron (NM_002249, intron 4 of 7) intron (NM_002249, intron 4 of 7) -102489 NM_001025107 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding 1701 chr1 151146663 151146817 + 0 NA promoter-TSS (NM_001178061) promoter-TSS (NM_001178061) -76 NM_030913 10500 Hs.516316 NM_030913 ENSG00000143434 SEMA6C SEMAY|m-SemaY|m-SemaY2 semaphorin 6C protein-coding 26223 chr7 47576111 47576261 + 0 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 5958 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 18774 chr22 30027244 30027441 + 0 NA 3' UTR (NM_021090, exon 20 of 20) 3' UTR (NM_021090, exon 20 of 20) 20293 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 26729 chr7 101252352 101252512 + 0 NA Intergenic CpG -7342 NM_016068 51024 Hs.423968 NM_016068 ENSG00000214253 FIS1 CGI-135|TTC11 fission, mitochondrial 1 protein-coding 22716 chr5 73565601 73565705 + 0 NA promoter-TSS (NM_001284430) promoter-TSS (NM_001284430) 33 NM_023039 57763 Hs.239154 NM_023039 ENSG00000164331 ANKRA2 ANKRA ankyrin repeat family A member 2 protein-coding 23635 chr5 159981827 159981923 + 0 NA Intergenic Intergenic -27225 NM_001282500 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 15339 chr2 36277275 36277412 + 0 NA Intergenic MLT2B4|LTR|ERVL 78227 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 27571 chr8 26151442 26151602 + 0 NA Intergenic Intergenic -106398 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 early B-cell factor 2 protein-coding 27217 chr7 150368023 150368127 + 0 NA promoter-TSS (NM_001099695) promoter-TSS (NM_001099695) -715 NM_001099696 29803 Hs.647086 NM_013400 ENSG00000214022 REPIN1 AP4|RIP60|ZNF464|Zfp464 replication initiator 1 protein-coding 25279 chr6 145756379 145756383 + 0 NA intron (NR_038246, intron 1 of 2) ERVL-E-int|LTR|ERVL -20526 NM_001018041 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A, laforin glucan phosphatase protein-coding 5542 chr11 67062542 67062646 + 0 NA intron (NM_001300886, intron 1 of 2) intron (NM_001300886, intron 1 of 2) 5776 NM_001300886 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 13409 chr18 32308903 32309007 + 0 NA intron (NM_022751, intron 3 of 5) intron (NM_022751, intron 3 of 5) 118931 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 4274 chr10 103273179 103273283 + 0 NA Intergenic Intergenic -3932 NM_032727 9118 Hs.500916 NM_032727 ENSG00000148798 INA NEF5|NF-66|TXBP-1 internexin neuronal intermediate filament protein alpha protein-coding 21495 chr4 80454132 80454236 + 0 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 118464 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 C4orf22 - chromosome 4 open reading frame 22 protein-coding 21385 chr4 55636192 55636372 + 0 NA promoter-TSS (NM_006681) promoter-TSS (NM_006681) 16 NM_001292045 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 5154 chr11 35139667 35139771 + 0 NA intron (NM_001202556, intron 1 of 7) intron (NM_001202556, intron 1 of 7) 849 NM_001202556 960 Hs.502328 NM_000610 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 13735 chr18 67265817 67265835 + 0 NA Intergenic Intergenic 184242 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 182 chr1 12480932 12480983 + 0 NA intron (NM_018156, intron 66 of 68) intron (NM_018156, intron 66 of 68) -26289 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 14293 chr19 19385635 19385764 + 0 NA promoter-TSS (NM_017660) promoter-TSS (NM_017660) -134 NM_017660 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 25740 chr7 16653020 16653045 + 0 NA intron (NR_027624, intron 1 of 10) intron (NR_027624, intron 1 of 10) 6898 NM_001159767 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 6681 chr12 15274690 15274887 + 0 NA Intergenic Intergenic -47469 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase, receptor type O protein-coding 29806 chr9 108552782 108552953 + 0 NA Intergenic Intergenic 303128 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 28476 chr8 117910122 117910226 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 201645 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 19327 chr3 33799023 33799147 + 0 NA intron (NM_013374, intron 1 of 17) CpG 514 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 17142 chr2 220812355 220812369 + 0 NA Intergenic Intergenic 759996 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 6380 chr11 131691723 131691827 + 0 NA intron (NM_001048209, intron 1 of 7) G-rich|Low_complexity|Low_complexity -28219 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 15119 chr2 19140946 19141113 + 0 NA Intergenic Intergenic -114058 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 6371 chr11 130775536 130775640 + 0 NA Intergenic Intergenic 86522 NR_125383 100507431 Hs.375101 NR_125383 LOC100507431 - uncharacterized LOC100507431 ncRNA 10056 chr15 48975834 48975951 + 0 NA Intergenic CpG -12448 NM_203349 399694 Hs.642615 NM_203349 ENSG00000185634 SHC4 RaLP|SHCD SHC adaptor protein 4 protein-coding 22416 chr5 39283428 39283520 + 0 NA TTS (NM_001737) TTS (NM_001737) -12817 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 10768 chr15 95684980 95685084 + 0 NA Intergenic Intergenic 251939 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 30058 chr9 122367972 122368076 + 0 NA Intergenic Intergenic -2506 NM_001271368 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 24862 chr6 83859573 83859719 + 0 NA promoter-TSS (NM_016230) promoter-TSS (NM_016230) -5 NM_016230 51167 Hs.5741 NM_016230 ENSG00000065615 CYB5R4 NCB5OR|cb5/cb5R|dJ676J13.1 cytochrome b5 reductase 4 protein-coding 11263 chr16 31180033 31180165 + 0 NA promoter-TSS (NR_028388) promoter-TSS (NR_028388) -11 NR_028388 2521 Hs.46894 NM_004960 ENSG00000089280 FUS ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS FUS RNA binding protein protein-coding 3486 chr10 28375804 28375976 + 0 NA Intergenic Intergenic -72824 NR_134518 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 30403 chrM 16318 16422 + 0 NA Intergenic Intergenic 14699 NR_137295 19254 chr3 23685839 23686063 + 0 NA Intergenic Intergenic -119942 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 19661 chr3 71982683 71982810 + 0 NA Intergenic HERVL-int|LTR|ERVL 117709 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 11605 chr16 72241956 72242060 + 0 NA Intergenic Intergenic -69558 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 - polyamine modulated factor 1 binding protein 1 protein-coding 29525 chr9 91192995 91193207 + 0 NA Intergenic Intergenic 74039 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 24730 chr6 55869003 55869133 + 0 NA intron (NM_021073, intron 1 of 6) intron (NM_021073, intron 1 of 6) 6522 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 9631 chr14 96741452 96741556 + 0 NA Intergenic CpG -55843 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A vaccinia related kinase 1 protein-coding 8126 chr13 38349465 38349546 + 0 NA promoter-TSS (NM_001286703) promoter-TSS (NM_001286703) -266 NM_016617 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20 ubiquitin fold modifier 1 protein-coding 11271 chr16 31700490 31700652 + 0 NA promoter-TSS (NR_024034) promoter-TSS (NR_024034) -42 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 26284 chr7 51350204 51350353 + 0 NA Intergenic Intergenic -33417 NM_001287436 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 11238 chr16 30740492 30740643 + 0 NA TTS (NM_006662) TTS (NM_006662) 376 NM_001256829 100862671 Hs.667372 NM_001256829 ENSG00000281991 TMEM265 IFITMD8 transmembrane protein 265 protein-coding 22567 chr5 57173609 57173729 + 0 NA promoter-TSS (NM_001203246) promoter-TSS (NM_001203246) -279 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 16721 chr2 177397525 177397629 + 0 NA intron (NM_003659, intron 1 of 19) intron (NM_003659, intron 1 of 19) 4834 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 9118 chr14 59484027 59484099 + 0 NA promoter-TSS (NM_001098625) promoter-TSS (NM_001098625) 292 NR_138575 112849 Hs.729061 NM_144581 ENSG00000126790 L3HYPDH C14orf149 trans-L-3-hydroxyproline dehydratase protein-coding 28866 chr9 470216 470229 + 0 NA promoter-TSS (NM_001256876) promoter-TSS (NM_001256876) -72 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 24822 chr6 79537375 79537479 + 0 NA promoter-TSS (NM_001122769) promoter-TSS (NM_001122769) 3 NM_181714 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 LCA5, lebercilin protein-coding 5743 chr11 82771900 82772022 + 0 NA Intergenic AluJb|SINE|Alu -38097 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 6442 chr12 1605822 1605938 + 0 NA Intergenic Intergenic -11176 NM_030775 81029 Hs.306051 NM_030775 ENSG00000111186 WNT5B - Wnt family member 5B protein-coding 31168 chrX 153470603 153470683 + 0 NA promoter-TSS (NM_017518) promoter-TSS (NM_017518) -12 NM_017518 55559 Hs.170835 NM_017518 ENSG00000213397 HAUS7 UCHL5IP|UIP1 HAUS augmin like complex subunit 7 protein-coding 11341 chr16 51762203 51762307 + 0 NA promoter-TSS (NR_110916) promoter-TSS (NR_110916) -264 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 16805 chr2 188693276 188693380 + 0 NA Intergenic L1PA13|LINE|L1 96776 NM_052952 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 protein-coding 27350 chr8 8334010 8334135 + 0 NA intron (NM_001080826, intron 3 of 4) intron (NM_001080826, intron 3 of 4) 47762 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related kinase activating pseudokinase 1 protein-coding 11329 chr16 50397231 50397461 + 0 NA Intergenic L2c|LINE|L2 -28412 NM_001173984 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 18345 chr20 59083111 59083215 + 0 NA Intergenic L2a|LINE|L2 -40317 NM_016045 51012 Hs.656865 NM_016045 ENSG00000101166 PRELID3B C20orf45|SLMO2|dJ543J19.5 PRELI domain containing 3B protein-coding 1174 chr1 83055479 83055622 + 0 NA Intergenic Intergenic -69342 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 24369 chr6 31665715 31665819 + 0 NA promoter-TSS (NM_001199238) promoter-TSS (NM_001199238) 95 NM_001199239 7918 Hs.247478 NM_033177 ENSG00000204438 GPANK1 ANKRD59|BAT4|D6S54E|G5|GPATCH10 G-patch domain and ankyrin repeats 1 protein-coding 15544 chr2 53767771 53767904 + 0 NA promoter-TSS (NM_001346127) promoter-TSS (NM_001346127) 54 NM_001008708 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 510 chr1 30824006 30824195 + 0 NA Intergenic Intergenic -66264 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 10965 chr16 4918795 4918899 + 0 NA intron (NM_002705, intron 1 of 21) intron (NM_002705, intron 1 of 21) 18288 NM_002705 5493 Hs.192233 NM_002705 ENSG00000118898 PPL - periplakin protein-coding 13332 chr18 23835163 23835267 + 0 NA intron (NM_001127717, intron 24 of 73) intron (NM_001127717, intron 24 of 73) -37805 NM_001127718 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 6482 chr12 5319027 5319154 + 0 NA Intergenic MLT1O|LTR|ERVL-MaLR -75939 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13385 chr18 31207010 31207029 + 0 NA Intergenic Intergenic -44163 NM_004948 1823 Hs.567260 NM_004948 ENSG00000134765 DSC1 CDHF1|DG2/DG3 desmocollin 1 protein-coding 21919 chr4 153344572 153344660 + 0 NA promoter-TSS (NM_001253861) promoter-TSS (NM_001253861) -33 NM_001253861 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 5892 chr11 95067093 95067223 + 0 NA non-coding (NR_103726, exon 1 of 2) non-coding (NR_103726, exon 1 of 2) 281 NR_103726 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 9051 chr14 55107912 55108058 + 0 NA Intergenic Intergenic -21232 NM_001177388 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 3262 chr10 6912610 6912686 + 0 NA Intergenic Intergenic 133050 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 8586 chr13 109243456 109243586 + 0 NA Intergenic Intergenic -76218 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 877 chr1 52698339 52698443 + 0 NA promoter-TSS (NM_023077) promoter-TSS (NM_023077) -25 NM_023077 65260 Hs.349905 NM_023077 ENSG00000162377 COA7 C1orf163|RESA1|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 13803 chr18 76822869 76822973 + 0 NA promoter-TSS (NR_040024) promoter-TSS (NR_040024) 314 NM_001306089 7776 Hs.719137 NM_007345 ENSG00000130856 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding 24721 chr6 54491627 54491731 + 0 NA Intergenic L1MA3|LINE|L1 183274 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 1508 chr1 111222968 111223072 + 0 NA Intergenic Intergenic -4639 NM_004000 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 18557 chr21 42009913 42010037 + 0 NA intron (NR_119384, intron 1 of 1) CpG 412 NM_001098402 49854 Hs.434947 NM_020727 ENSG00000173276 ZBTB21 ZNF295 zinc finger and BTB domain containing 21 protein-coding 16986 chr2 207240185 207240289 + 0 NA intron (NR_110283, intron 2 of 3) intron (NR_110283, intron 2 of 3) 14079 NR_110283 101927865 Hs.574609 NR_110283 LOC101927865 - uncharacterized LOC101927865 ncRNA 1771 chr1 153670994 153671138 + 0 NA promoter-TSS (NM_001267809) promoter-TSS (NM_001267809) -38 NM_004515 3608 Hs.75117 NM_004515 ENSG00000143621 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding 10551 chr15 81111148 81111252 + 0 NA Intergenic L2b|LINE|L2 -23103 NM_173528 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 30943 chrX 107766874 107766978 + 0 NA intron (NM_198057, intron 1 of 2) intron (NM_198057, intron 1 of 2) 8861 NM_198057 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 25270 chr6 144330739 144330843 + 0 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) 39054 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 24806 chr6 75749146 75749295 + 0 NA promoter-TSS (NM_001300899) promoter-TSS (NM_001300899) 28 NM_004999 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 21326 chr4 47463593 47463621 + 0 NA exon (NM_001329668, exon 1 of 5) exon (NM_001329668, exon 1 of 5) 123 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 5297 chr11 58658690 58658794 + 0 NA Intergenic Intergenic 36069 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 13035 chr17 76265110 76265263 + 0 NA promoter-TSS (NM_182565) promoter-TSS (NM_182565) -19 NM_182565 283991 Hs.744981 NM_182565 ENSG00000185262 UBALD2 FAM100B UBA like domain containing 2 protein-coding 29416 chr9 85013882 85013986 + 0 NA intron (NM_001018064, intron 15 of 16) intron (NM_001018064, intron 15 of 16) 343557 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 20040 chr3 123201759 123201875 + 0 NA promoter-TSS (NM_012430) promoter-TSS (NM_012430) -110 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 8718 chr14 23035250 23035354 + 0 NA promoter-TSS (NM_001144932) promoter-TSS (NM_001144932) -82 NM_001130725 5693 Hs.422990 NM_002797 ENSG00000100804 PSMB5 LMPX|MB1|X proteasome subunit beta 5 protein-coding 19808 chr3 105869011 105869080 + 0 NA promoter-TSS (NM_001321788) promoter-TSS (NM_001321788) -2 NR_135808 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 15702 chr2 66925274 66925378 + 0 NA intron (NR_110169, intron 1 of 4) intron (NR_110169, intron 1 of 4) -2836 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 26361 chr7 66995632 66995771 + 0 NA promoter-TSS (NM_016038) promoter-TSS (NM_016038) -100 NM_016038 51119 Hs.110445 NM_016038 ENSG00000126524 SBDS CGI-97|SDS|SWDS SBDS ribosome assembly guanine nucleotide exchange factor protein-coding 20703 chr3 177295308 177295404 + 0 NA intron (NR_047465, intron 1 of 1) intron (NR_047465, intron 1 of 1) 914 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 4074 chr10 92291042 92291196 + 0 NA promoter-TSS (NM_014912) promoter-TSS (NM_014912) -1 NM_014912 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 22607 chr5 61301900 61302004 + 0 NA Intergenic Intergenic -30321 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND zinc finger SWIM-type containing 6 protein-coding 21042 chr3 196082104 196082225 + 0 NA promoter-TSS (NM_001313965) promoter-TSS (NM_001313965) -3 NM_001313965 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 24354 chr6 31169550 31169676 + 0 NA intron (NM_002701, intron 1 of 4).6 intron (NM_002701, intron 1 of 4).6 1080 NM_002701 5460 Hs.249184 NM_002701 ENSG00000204531 POU5F1 OCT3|OCT4|OTF-3|OTF3|OTF4|Oct-3|Oct-4 POU class 5 homeobox 1 protein-coding 4056 chr10 90227269 90227373 + 0 NA Intergenic Intergenic -269948 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 7452 chr12 94595316 94595420 + 0 NA intron (NM_020698, intron 1 of 3) intron (NM_020698, intron 1 of 3) 20783 NM_001301036 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 8849 chr14 34843246 34843363 + 0 NA intron (NM_182648, intron 3 of 25) MLT1H2|LTR|ERVL-MaLR 32343 NM_182648 11177 Hs.509140 NM_013448 ENSG00000198604 BAZ1A ACF1|WALp1|WCRF180|hACF1 bromodomain adjacent to zinc finger domain 1A protein-coding 26375 chr7 70599128 70599209 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -533369 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 250 chr1 17208179 17208331 + 0 NA intron (NM_013358, intron 1 of 15) intron (NM_013358, intron 1 of 15) 3129 NM_013358 29943 Hs.412941 NM_013358 ENSG00000142623 PADI1 HPAD10|PAD1|PDI|PDI1 peptidyl arginine deiminase 1 protein-coding 5127 chr11 34193145 34193254 + 0 NA intron (NM_145804, intron 3 of 16) intron (NM_145804, intron 3 of 16) 87635 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|NET43 N-acetyltransferase 10 protein-coding 24890 chr6 87155346 87155538 + 0 NA promoter-TSS (NM_015021) promoter-TSS (NM_015021) -109 NM_015021 23036 Hs.485892 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 22021 chr4 173334478 173334653 + 0 NA promoter-TSS (NM_002129) promoter-TSS (NM_002129) -121 NM_002129 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 2959 chr1 232682412 232682516 + 0 NA Intergenic Intergenic 60251 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 19860 chr3 111585367 111585471 + 0 NA intron (NR_134917, intron 5 of 14) intron (NR_134917, intron 5 of 14) 9916 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 9923 chr15 40258149 40258253 + 0 NA intron (NM_001276717, intron 1 of 9) intron (NM_001276717, intron 1 of 9) 5023 NM_001276717 56924 Hs.732375 NM_020168 ENSG00000137843 PAK6 PAK5 p21 (RAC1) activated kinase 6 protein-coding 16541 chr2 160220797 160220901 + 0 NA Intergenic LTR50|LTR|ERVL -20536 NM_001282388 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 22560 chr5 56534204 56534308 + 0 NA intron (NM_001287053, intron 3 of 5) intron (NM_001287053, intron 3 of 5) -52487 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 18726 chr22 26590096 26590200 + 0 NA promoter-TSS (NM_003595) promoter-TSS (NM_003595) -23 NM_003595 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B tyrosylprotein sulfotransferase 2 protein-coding 13272 chr18 11947369 11947514 + 0 NA Intergenic Intergenic -33987 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 18780 chr22 30298463 30298606 + 0 NA intron (NM_031937, intron 3 of 8) intron (NM_031937, intron 3 of 8) -8907 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 GATSL3 CASTOR1 GATS protein like 3 protein-coding 22566 chr5 57051031 57051112 + 0 NA Intergenic Intergenic -98941 NM_152622 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 130 chr1 9303314 9303391 + 0 NA intron (NM_025106, intron 1 of 2) ERVL-int|LTR|ERVL 10470 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 1373 chr1 97193005 97193109 + 0 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 97134 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 8893 chr14 36773211 36773315 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 115695 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 20278 chr3 141094081 141094185 + 0 NA intron (NM_080862, intron 2 of 2) intron (NM_080862, intron 2 of 2) 42731 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 11154 chr16 24669596 24669717 + 0 NA intron (NR_122072, intron 1 of 2) intron (NR_122072, intron 1 of 2) 1406 NR_122072 400511 Hs.592028 NR_122072 ENSG00000224310 LINC01567 - long intergenic non-protein coding RNA 1567 ncRNA 5329 chr11 60915467 60915571 + 0 NA intron (NM_024092, intron 1 of 3) MER5B|DNA|hAT-Charlie 1620 NM_024092 79073 Hs.13662 NM_024092 ENSG00000110108 TMEM109 - transmembrane protein 109 protein-coding 4966 chr11 18634430 18634518 + 0 NA promoter-TSS (NM_194285) promoter-TSS (NM_194285) -1 NM_194285 144108 Hs.738650 NM_194285 ENSG00000179119 SPTY2D1 Spt2 SPT2 chromatin protein domain containing 1 protein-coding 7284 chr12 76031657 76031761 + 0 NA promoter-TSS (NM_007350) promoter-TSS (NM_007350) 67 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 24240 chr6 26537421 26537565 + 0 NA promoter-TSS (NM_006353) promoter-TSS (NM_006353) -851 NM_006353 10473 Hs.236774 NM_006353 ENSG00000182952 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 4517 chr10 121598477 121598655 + 0 NA promoter-TSS (NM_001144917) promoter-TSS (NM_001144917) -108 NR_073009 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 7581 chr12 106138891 106138995 + 0 NA 5' UTR (NM_014840, exon 1 of 7) 5' UTR (NM_014840, exon 1 of 7) 1090 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 25980 chr7 30938857 30939017 + 0 NA Intergenic Intergenic -25084 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B growth hormone releasing hormone receptor protein-coding 12712 chr17 54900668 54900760 + 0 NA promoter-TSS (NM_001321174) promoter-TSS (NM_001321174) 23 NM_001321173 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 24228 chr6 26224052 26224152 + 0 NA Intergenic Intergenic -1053 NM_003532 8353 Hs.443021 NM_003532 ENSG00000274750 HIST1H3E H3.1|H3/d|H3FD histone cluster 1 H3 family member e protein-coding 21531 chr4 83618582 83618686 + 0 NA Intergenic Intergenic 82317 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 30199 chr9 128787102 128787253 + 0 NA promoter-TSS (NM_001286772) promoter-TSS (NM_001286772) -30 NM_018201 54662 Hs.3376 NM_018201 ENSG00000107021 TBC1D13 - TBC1 domain family member 13 protein-coding 22147 chr5 1345152 1345256 + 0 NA promoter-TSS (NM_030782) promoter-TSS (NM_030782) -134 NM_030782 81037 Hs.444673 NM_030782 ENSG00000049656 CLPTM1L CRR9 CLPTM1 like protein-coding 1824 chr1 155763547 155763654 + 0 NA TTS (NM_001282861) TTS (NM_001282861) 17832 NR_024117 100129405 Hs.656361 NR_024117 MSTO2P MSTO2 misato family member 2, pseudogene pseudo 19225 chr3 17039654 17039834 + 0 NA intron (NM_015184, intron 3 of 5) intron (NM_015184, intron 3 of 5) 106548 NR_037465 100500913 NR_037465 ENSG00000154822 MIR3714 - microRNA 3714 ncRNA 19283 chr3 27484527 27484631 + 0 NA promoter-TSS (NM_001258379) promoter-TSS (NM_001258379) -159 NM_001321103 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 12437 chr17 39730209 39730313 + 0 NA exon (NM_032339, exon 2 of 4) exon (NM_032339, exon 2 of 4) 302 NM_001330206 84299 Hs.333526 NM_032339 ENSG00000141741 MIEN1 C17orf37|C35|ORB3|RDX12|XTP4 migration and invasion enhancer 1 protein-coding 23229 chr5 133292439 133292543 + 0 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 135215 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 9986 chr15 43185257 43185434 + 0 NA promoter-TSS (NR_027513) promoter-TSS (NR_027513) 77 NM_012142 23582 Hs.36794 NM_012142 ENSG00000166946 CCNDBP1 DIP1|GCIP|HHM cyclin D1 binding protein 1 protein-coding 16419 chr2 144659856 144659979 + 0 NA Intergenic Intergenic -8050 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 18914 chr22 39214575 39214729 + 0 NA Intergenic Intergenic 26257 NM_033016 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 6514 chr12 6376140 6376237 + 0 NA promoter-TSS (NM_001159576) promoter-TSS (NM_001159576) -449 NM_001038 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 23053 chr5 115379711 115379815 + 0 NA Intergenic Intergenic -83002 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 19422 chr3 43622218 43622344 + 0 NA promoter-TSS (NM_001346464) promoter-TSS (NM_001346464) -204 NM_001346464 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 19719 chr3 97883244 97883257 + 0 NA intron (NM_153605, intron 7 of 21) intron (NM_153605, intron 7 of 21) 61210 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 20980 chr3 192850494 192850632 + 0 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 67598 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 18455 chr21 29196447 29196551 + 0 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 3005 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 3868 chr10 72273784 72273896 + 0 NA promoter-TSS (NM_019058) promoter-TSS (NM_019058) -79 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 10638 chr15 87527554 87527658 + 0 NA Intergenic MLT2F|LTR|ERVL -49323 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 16105 chr2 109125718 109125797 + 0 NA Intergenic L3|LINE|CR1 -3784 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 16275 chr2 127388196 127388277 + 0 NA Intergenic CpG -30184 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 13902 chr19 2543687 2543798 + 0 NA intron (NM_052847, intron 3 of 4) CpG 67617 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 26704 chr7 100436525 100436687 + 0 NA promoter-TSS (NM_001346938) promoter-TSS (NM_001346938) -133 NM_001346938 221908 Hs.413359 NM_145030 ENSG00000160813 PPP1R35 C7orf47 protein phosphatase 1 regulatory subunit 35 protein-coding 25148 chr6 130001206 130001297 + 0 NA Intergenic Intergenic -17118 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 l(3)mbt-like 3 (Drosophila) protein-coding 9272 chr14 68577998 68578089 + 0 NA intron (NM_001321818, intron 10 of 10) MamRTE1|LINE|RTE-BovB 50744 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 4936 chr11 16946035 16946161 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 68318 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 23275 chr5 136020569 136020626 + 0 NA Intergenic Intergenic -8298 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 10818 chr15 100968431 100968468 + 0 NA intron (NM_024652, intron 2 of 33) L1ME2z|LINE|L1 -49166 NR_135828 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 25815 chr7 20998409 20998580 + 0 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 163063 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 17730 chr20 19976937 19977097 + 0 NA intron (NM_018993, intron 7 of 10) intron (NM_018993, intron 7 of 10) -40273 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 15456 chr2 44100535 44100639 + 0 NA Intergenic Intergenic -68216 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 13220 chr18 3261746 3261879 + 0 NA promoter-TSS (NR_130143) promoter-TSS (NR_130143) 18 NR_130143 104968399 Hs.464472 NR_130143 ENSG00000264235 LOC104968399 - uncharacterized LOC104968399 ncRNA 26938 chr7 123798066 123798239 + 0 NA Intergenic Intergenic -7441 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 18394 chr20 62937911 62938055 + 0 NA promoter-TSS (NM_033081) promoter-TSS (NM_033081) -31 NM_022105 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 29646 chr9 97633433 97633595 + 0 NA promoter-TSS (NM_002486) promoter-TSS (NM_002486) 91 NM_002486 4686 Hs.595669 NM_002486 ENSG00000136937 NCBP1 CBP80|NCBP|Sto1 nuclear cap binding protein subunit 1 protein-coding 18572 chr21 42974521 42974625 + 0 NA promoter-TSS (NM_001320694) promoter-TSS (NM_001320694) 63 NM_004571 5316 Hs.431043 NM_004571 ENSG00000160199 PKNOX1 PREP1|pkonx1c PBX/knotted 1 homeobox 1 protein-coding 9425 chr14 77097924 77098028 + 0 NA promoter-TSS (NM_033426) promoter-TSS (NM_033426) -259 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 2586 chr1 210233855 210233959 + 0 NA non-coding (NR_024337, exon 1 of 2) non-coding (NR_024337, exon 1 of 2) 214 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 16475 chr2 152336552 152336656 + 0 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 1367 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 11971 chr17 4807031 4807132 + 0 NA promoter-TSS (NM_002663) promoter-TSS (NM_002663) -20 NM_001243108 5338 Hs.104519 NM_002663 ENSG00000129219 PLD2 PLD1C phospholipase D2 protein-coding 9079 chr14 56660145 56660276 + 0 NA Intergenic Intergenic 80417 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101 transmembrane protein 260 protein-coding 14357 chr19 34172306 34172401 + 0 NA promoter-TSS (NM_001114093) promoter-TSS (NM_001114093) -94 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, mRNA processing body assembly factor protein-coding 14701 chr19 49676923 49677008 + 0 NA promoter-TSS (NM_198318) promoter-TSS (NM_198318) -187 NM_001207042 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 22280 chr5 16913600 16913704 + 0 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 22624 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 8295 chr13 52349126 52349183 + 0 NA Intergenic Intergenic 14859 NR_120400 103191607 NR_120400 ENSG00000271564 LOC103191607 - uncharacterized LOC103191607 ncRNA 26438 chr7 75915086 75915190 + 0 NA promoter-TSS (NM_000941) promoter-TSS (NM_000941) 36 NM_000941 5447 Hs.354056 NM_000941 ENSG00000127948 POR CPR|CYPOR|P450R cytochrome p450 oxidoreductase protein-coding 7944 chr13 20773972 20773988 + 0 NA promoter-TSS (NM_174928) promoter-TSS (NM_174928) -22 NM_001318939 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1 protein-coding 24155 chr6 19795350 19795454 + 0 NA intron (NR_134651, intron 2 of 3) intron (NR_134651, intron 2 of 3) 9357 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 14774 chr19 54109774 54109878 + 0 NA intron (NM_001321792, intron 3 of 5).4 intron (NM_001321792, intron 3 of 5).4 5248 NM_001321792 29844 Hs.590939 NM_013342 ENSG00000105619 TFPT FB1|INO80F|amida TCF3 fusion partner protein-coding 5603 chr11 70048827 70048960 + 0 NA Intergenic Intergenic 15031 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LOC101928443 - uncharacterized LOC101928443 ncRNA 17242 chr2 229922125 229922260 + 0 NA promoter-TSS (NM_001284214) promoter-TSS (NM_001284214) -183 NM_001284214 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 8618 chr13 110706166 110706319 + 0 NA promoter-TSS (NM_024537) promoter-TSS (NM_024537) -62 NM_024537 79587 Hs.508725 NM_024537 ENSG00000134905 CARS2 COXPD27|cysRS cysteinyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 8829 chr14 34035812 34035963 + 0 NA Intergenic Intergenic -84809 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 12052 chr17 7717521 7717590 + 0 NA promoter-TSS (NM_001303270) promoter-TSS (NM_001303270) 201 NM_020877 146754 Hs.367649 NM_020877 ENSG00000183914 DNAH2 DNAHC2|DNHD3 dynein axonemal heavy chain 2 protein-coding 8756 chr14 24213393 24213542 + 0 NA TTS (NM_001199821) TTS (NM_001199821) 363 NM_014169 29082 Hs.279761 NM_014169 ENSG00000254505 CHMP4A C14orf123|CHMP4|CHMP4B|HSPC134|SHAX2|SNF7|SNF7-1|VPS32-1|VPS32A charged multivesicular body protein 4A protein-coding 29022 chr9 31598075 31598179 + 0 NA Intergenic Intergenic -216637 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 18159 chr20 49484215 49484319 + 0 NA Intergenic CpG -1623 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 9243 chr14 67241200 67241223 + 0 NA promoter-TSS (NM_001256550) promoter-TSS (NM_001256550) -84 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 11703 chr16 80540812 80541036 + 0 NA promoter-TSS (NM_130897) promoter-TSS (NM_130897) -28 NM_130897 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 20435 chr3 153052160 153052291 + 0 NA Intergenic Intergenic -109987 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 8994 chr14 51539579 51539683 + 0 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 50510 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 18521 chr21 37267518 37267624 + 0 NA promoter-TSS (NM_006052) promoter-TSS (NM_006052) -39 NM_006052 10311 Hs.369488 NM_006052 ENSG00000157538 DSCR3 DCRA|DSCRA DSCR3 arrestin fold containing protein-coding 2869 chr1 227563823 227563927 + 0 NA intron (NR_033184, intron 1 of 3) CpG 356 NR_033184 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 5047 chr11 27447677 27447822 + 0 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) -23982 NR_131169 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 9902 chr15 39177636 39177786 + 0 NA Intergenic Intergenic -72958 NR_144507 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 10050 chr15 48760041 48760145 + 0 NA intron (NM_014985, intron 19 of 25) intron (NM_014985, intron 19 of 25) 51053 NM_014985 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 10435 chr15 74196368 74196572 + 0 NA intron (NM_001199041, intron 4 of 18) intron (NM_001199041, intron 4 of 18) 6409 NM_022369 64220 Hs.24553 NM_022369 ENSG00000137868 STRA6 MCOPCB8|MCOPS9|PP14296 stimulated by retinoic acid 6 protein-coding 23395 chr5 142239504 142239655 + 0 NA Intergenic L1M5|LINE|L1 78743 NR_131221 100642175 Hs.684549 NR_131221 ENSG00000281881 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 27625 chr8 29086003 29086144 + 0 NA intron (NM_015254, intron 37 of 39) L3b|LINE|CR1 177020 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 13818 chr18 79245682 79245786 + 0 NA intron (NM_198531, intron 11 of 29) intron (NM_198531, intron 11 of 29) -150038 NM_001278669 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding 23708 chr5 171521436 171521539 + 0 NA Intergenic L2b|LINE|L2 101824 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 15725 chr2 68829335 68829439 + 0 NA Intergenic Intergenic 42130 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 19685 chr3 85161654 85161774 + 0 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -99450 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 20753 chr3 180602070 180602237 + 0 NA promoter-TSS (NM_001042601) promoter-TSS (NM_001042601) 23 NM_001288582 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 4220 chr10 100373341 100373496 + 0 NA promoter-TSS (NR_026762) promoter-TSS (NR_026762) -158 NR_026762 90271 Hs.628088 NR_026762 OLMALINC C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS oligodendrocyte maturation-associated long intergenic non-coding RNA ncRNA 10488 chr15 77083887 77083983 + 0 NA Intergenic Intergenic -12707 NM_198902 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 10543 chr15 80778218 80778322 + 0 NA Intergenic Intergenic -1073 NM_001293298 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronan binding protein protein-coding 26833 chr7 112449452 112449556 + 0 NA promoter-TSS (NM_001550) promoter-TSS (NM_001550) -924 NM_001550 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 939 chr1 58584722 58584830 + 0 NA Intergenic Intergenic -7282 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 6511 chr12 6363514 6363550 + 0 NA exon (NM_001159576, exon 2 of 12) exon (NM_001159576, exon 2 of 12) 11692 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 30037 chr9 121234374 121234428 + 0 NA Intergenic ERVL-int|LTR|ERVL -32314 NM_016322 51552 Hs.371563 NM_016322 ENSG00000119396 RAB14 FBP|RAB-14 RAB14, member RAS oncogene family protein-coding 5222 chr11 45805013 45805168 + 0 NA promoter-TSS (NM_018389) promoter-TSS (NM_018389) 0 NM_018389 55343 Hs.12211 NM_018389 ENSG00000181830 SLC35C1 CDG2C|FUCT1 solute carrier family 35 member C1 protein-coding 4095 chr10 93476068 93476216 + 0 NA intron (NM_133337, intron 1 of 52) intron (NM_133337, intron 1 of 52) 6175 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 20623 chr3 170181639 170181814 + 0 NA promoter-TSS (NM_001308116) promoter-TSS (NM_001308116) 23 NM_001308116 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 25438 chr6 160348557 160348630 + 0 NA exon (NM_021977, exon 1 of 11) exon (NM_021977, exon 1 of 11) 220 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 19438 chr3 45125826 45125859 + 0 NA intron (NM_178181, intron 1 of 3) MER96|DNA|hAT-Tip100 20580 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 25233 chr6 140174634 140174738 + 0 NA Intergenic Intergenic -30566 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 1670 chr1 150010716 150010829 + 0 NA promoter-TSS (NM_020205) promoter-TSS (NM_020205) -35 NM_020205 56957 Hs.98322 NM_020205 ENSG00000264522 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 23657 chr5 163505467 163505631 + 0 NA promoter-TSS (NM_013283) promoter-TSS (NM_013283) 21 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 2010 chr1 167161385 167161429 + 0 NA Intergenic Intergenic 34398 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 24580 chr6 43059423 43059589 + 0 NA promoter-TSS (NM_015950) promoter-TSS (NM_015950) 39 NM_015950 51069 Hs.55041 NM_015950 ENSG00000112651 MRPL2 CGI-22|MRP-L14|RPML14 mitochondrial ribosomal protein L2 protein-coding 9767 chr14_GL000225v1_random 25531 25679 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 27946 chr8 64630497 64630601 + 0 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 50311 NM_152414 27319 Hs.388788 NM_152414 ENSG00000180828 BHLHE22 BHLHB5|Beta3|Beta3a|CAGL85|TNRC20 basic helix-loop-helix family member e22 protein-coding 1537 chr1 113390246 113390369 + 0 NA promoter-TSS (NM_001142782) promoter-TSS (NM_001142782) -546 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 894 chr1 54053392 54053496 + 0 NA promoter-TSS (NM_001305043) promoter-TSS (NM_001305043) -6 NM_001305043 9528 Hs.118947 NM_004872 ENSG00000116209 TMEM59 C1orf8|DCF1|HSPC001|PRO195|UNQ169 transmembrane protein 59 protein-coding 13849 chr19 1039962 1040108 + 0 NA promoter-TSS (NM_019112) promoter-TSS (NM_019112) -68 NM_019112 10347 Hs.134514 NM_019112 ENSG00000064687 ABCA7 ABCA-SSN|ABCX|AD9 ATP binding cassette subfamily A member 7 protein-coding 20085 chr3 126704019 126704137 + 0 NA promoter-TSS (NM_001320610) promoter-TSS (NM_001320610) -142 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 3425 chr10 23514589 23514693 + 0 NA Intergenic L2c|LINE|L2 75372 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 140 chr1 9836477 9836581 + 0 NA Intergenic Intergenic -12003 NM_014944 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 25315 chr6 149717696 149717848 + 0 NA non-coding (NR_134652, exon 1 of 1) non-coding (NR_134652, exon 1 of 1) 151 NR_134652 645967 Hs.604079 NR_134652 ENSG00000278899 LOC645967 - uncharacterized LOC645967 ncRNA 19070 chr22_KI270733v1_random 168790 168944 + 0 NA Intergenic CpG -1348 NR_128714 103504728 NR_128714 ENSG00000264063 MIR3687-2 hsa-mir-3687-2 microRNA 3687-2 ncRNA 13973 chr19 5293459 5293562 + 0 NA intron (NM_130855, intron 1 of 29) CpG 47293 NM_002850 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase, receptor type S protein-coding 27185 chr7 148327515 148327619 + 0 NA intron (NM_014141, intron 21 of 23) intron (NM_014141, intron 21 of 23) -262998 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 20629 chr3 170357090 170357193 + 0 NA promoter-TSS (NM_001145098) promoter-TSS (NM_001145098) -544 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 12545 chr17 43483982 43483990 + 0 NA promoter-TSS (NM_004941) promoter-TSS (NM_004941) 69 NM_004941 1659 Hs.463105 NM_004941 ENSG00000067596 DHX8 DDX8|HRH1|PRP22|PRPF22 DEAH-box helicase 8 protein-coding 13647 chr18 58768761 58768896 + 0 NA Intergenic Intergenic -93772 NM_001318726 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 27719 chr8 39233537 39233584 + 0 NA intron (NM_145004, intron 15 of 24) MER41B|LTR|ERV1 -81103 NR_001448 255926 Hs.369765 NM_001040073 ENSG00000196115 ADAM5 ADAM5P|TMDCII ADAM metallopeptidase domain 5 (pseudogene) pseudo 4950 chr11 17973090 17973194 + 0 NA intron (NR_104040, intron 8 of 11) intron (NR_104040, intron 8 of 11) 40020 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 29344 chr9 79639515 79639619 + 0 NA intron (NM_007005, intron 6 of 19) Tigger3c|DNA|TcMar-Tigger 67794 NR_104239 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 23338 chr5 140113942 140114096 + 0 NA promoter-TSS (NM_005859) promoter-TSS (NM_005859) -104 NM_005859 5813 Hs.443121 NM_005859 ENSG00000185129 PURA MRD31|PUR-ALPHA|PUR1|PURALPHA purine rich element binding protein A protein-coding 10793 chr15 99251221 99251325 + 0 NA promoter-TSS (NM_001288616) promoter-TSS (NM_001288616) -47 NM_001288616 64927 Hs.513195 NM_022905 ENSG00000103852 TTC23 HCC-8 tetratricopeptide repeat domain 23 protein-coding 23996 chr6 8435494 8435652 + 0 NA promoter-TSS (NR_038979) promoter-TSS (NR_038979) -6 NR_109914 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 30207 chr9 128902492 128902642 + 0 NA intron (NM_001127244, intron 2 of 3) intron (NM_001127244, intron 2 of 3) -18328 NM_174933 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 17583 chr20 10558814 10558953 + 0 NA intron (NM_001009608, intron 3 of 7) intron (NM_001009608, intron 3 of 7) 90812 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 29274 chr9 75906668 75906757 + 0 NA intron (NM_001190482, intron 1 of 36) L2|LINE|L2 16068 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 21642 chr4 102684780 102684884 + 0 NA intron (NM_005908, intron 7 of 16) MER44B|DNA|TcMar-Tigger 76162 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 4147 chr10 96843114 96843232 + 0 NA intron (NM_032440, intron 2 of 7) AluJr4|SINE|Alu 10218 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 4355 chr10 110865512 110865600 + 0 NA Intergenic Intergenic 5348 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 6223 chr11 121466736 121466792 + 0 NA intron (NM_003105, intron 1 of 47) intron (NM_003105, intron 1 of 47) 14561 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 26144 chr7 43261440 43261544 + 0 NA intron (NM_015052, intron 3 of 29) intron (NM_015052, intron 3 of 29) 110597 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 6713 chr12 19299927 19300031 + 0 NA intron (NM_001143821, intron 14 of 27) intron (NM_001143821, intron 14 of 27) 94654 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 30770 chrX 63351275 63351424 + 0 NA promoter-TSS (NM_001012968) promoter-TSS (NM_001012968) -10 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 23523 chr5 150700973 150700987 + 0 NA exon (NM_018047, exon 1 of 11) exon (NM_018047, exon 1 of 11) 127 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 8953 chr14 49635193 49635297 + 0 NA promoter-TSS (NM_001083908) promoter-TSS (NM_001083908) -15 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 17249 chr2 230416127 230416231 + 0 NA promoter-TSS (NM_001206702) promoter-TSS (NM_001206702) 23 NM_001206702 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 6365 chr11 130631255 130631359 + 0 NA Intergenic Intergenic -35428 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 8150 chr13 40453693 40453857 + 0 NA intron (NR_024507, intron 5 of 6) intron (NR_024507, intron 5 of 6) 27231 NR_024505 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 - long intergenic non-protein coding RNA 598 ncRNA 698 chr1 40258118 40258256 + 0 NA 5' UTR (NM_005857, exon 1 of 10) 5' UTR (NM_005857, exon 1 of 10) 137 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 6226 chr11 121478395 121478499 + 0 NA intron (NM_003105, intron 3 of 47) intron (NM_003105, intron 3 of 47) 26244 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 23872 chr6 1671214 1671351 + 0 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 60836 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 21853 chr4 143352198 143352281 + 0 NA intron (NM_207123, intron 1 of 10) intron (NM_207123, intron 1 of 10) 8779 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 2714 chr1 218660894 218660998 + 0 NA intron (NR_031644, intron 3 of 6) MamSINE1|SINE|tRNA-RTE 218320 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 24410 chr6 33298195 33298267 + 0 NA intron (NM_001243738, intron 1 of 16).5 intron (NM_001243738, intron 1 of 16).5 1157 NM_004761 5863 Hs.509622 NM_004761 ENSG00000237441 RGL2 HKE1.5|KE1.5|RAB2L ral guanine nucleotide dissociation stimulator like 2 protein-coding 4380 chr10 113126664 113126768 + 0 NA intron (NM_001146283, intron 5 of 12) CpG 81361 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 598 chr1 34762949 34762973 + 0 NA 3' UTR (NM_153212, exon 2 of 2) 3' UTR (NM_153212, exon 2 of 2) 3220 NM_153212 127534 Hs.351203 NM_153212 ENSG00000189433 GJB4 CX30.3|EKV gap junction protein beta 4 protein-coding 27768 chr8 47353755 47353906 + 0 NA intron (NR_104581, intron 5 of 16) intron (NR_104581, intron 5 of 16) 92952 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 780 chr1 44355224 44355351 + 0 NA promoter-TSS (NM_001301699) promoter-TSS (NM_001301699) -8 NM_001301699 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 13236 chr18 5238072 5238130 + 0 NA promoter-TSS (NR_026849) promoter-TSS (NR_026849) 1 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 27551 chr8 24229304 24229400 + 0 NA Intergenic MIR1_Amn|SINE|MIR -64688 NM_014265 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 3547 chr10 32980522 32980720 + 0 NA Intergenic CpG -22256 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 3490 chr10 28668783 28668878 + 0 NA Intergenic CpG -8665 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 5331 chr11 60986296 60986371 + 0 NA intron (NM_001254750, intron 1 of 10) intron (NM_001254750, intron 1 of 10) 14692 NM_001254750 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 29486 chr9 88388677 88388781 + 0 NA intron (NM_006717, intron 1 of 5) CpG 347 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 240 chr1 16896503 16896644 + 0 NA TTS (NR_004400).2 TTS (NR_004400).2 593 NR_004408 26869 NR_004408 ENSG00000207513 RNU1-3 HSD4|RNU1G3 RNA, U1 small nuclear 3 snRNA 25882 chr7 24980309 24980438 + 0 NA promoter-TSS (NM_015550) promoter-TSS (NM_015550) -161 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 2209 chr1 183186075 183186244 + 0 NA 5' UTR (NM_018891, exon 1 of 22) 5' UTR (NM_018891, exon 1 of 22) 120 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 5462 chr11 65134516 65134670 + 0 NA promoter-TSS (NM_172230) promoter-TSS (NM_172230) -61 NM_172230 84447 Hs.75859 NM_032431 ENSG00000162298 SYVN1 DER3|HRD1 synoviolin 1 protein-coding 29008 chr9 27371649 27371753 + 0 NA intron (NM_024761, intron 2 of 3) MER102c|DNA|hAT-Charlie -74562 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 12609 chr17 47841318 47841343 + 0 NA promoter-TSS (NM_001145023) promoter-TSS (NM_001145023) 3 NM_138355 90507 Hs.239718 NM_138355 ENSG00000141295 SCRN2 Ses2 secernin 2 protein-coding 23107 chr5 122845350 122845454 + 0 NA promoter-TSS (NM_014035) promoter-TSS (NM_014035) -63 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 22450 chr5 42423368 42423518 + 0 NA promoter-TSS (NM_000163) promoter-TSS (NM_000163) -332 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 20240 chr3 138282209 138282351 + 0 NA intron (NM_015396, intron 19 of 22) intron (NM_015396, intron 19 of 22) 47606 NM_178130 347736 Hs.660992 NM_178130 ENSG00000181322 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 19886 chr3 112391469 112391532 + 0 NA Intergenic Intergenic 58553 NM_001318830 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 2374 chr1 201461929 201462060 + 0 NA Intergenic Intergenic 7177 NR_073080 23612 Hs.153944 NM_012396 ENSG00000174307 PHLDA3 TIH1 pleckstrin homology like domain family A member 3 protein-coding 5882 chr11 94706335 94706486 + 0 NA intron (NR_135096, intron 1 of 6) intron (NR_135096, intron 1 of 6) 33945 NR_135093 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 7606 chr12 107405105 107405209 + 0 NA intron (NM_001347944, intron 1 of 14) MER91C|DNA|hAT-Tip100 84569 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 24603 chr6 43702956 43703075 + 0 NA Intergenic Intergenic -15203 NM_018135 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRPS18-3|S18bmt mitochondrial ribosomal protein S18A protein-coding 9994 chr15 43746211 43746374 + 0 NA promoter-TSS (NR_002318) promoter-TSS (NR_002318) 6 NR_002318 440278 Hs.253260 NR_002318 ENSG00000205771 CATSPER2P1 - cation channel sperm associated 2 pseudogene 1 pseudo 6035 chr11 108698916 108699177 + 0 NA intron (NM_004398, intron 9 of 17) L2a|LINE|L2 34021 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 HRH-J8 DEAD-box helicase 10 protein-coding 25931 chr7 27611214 27611258 + 0 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -4738 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 2772 chr1 222617708 222617840 + 0 NA promoter-TSS (NM_001324062) promoter-TSS (NM_001324062) -328 NM_001324064 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA family member 3, ER export factor protein-coding 25518 chr7 391545 391682 + 0 NA Intergenic Intergenic 12188 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 8872 chr14 35669952 35669959 + 0 NA intron (NM_194301, intron 25 of 39) L2c|LINE|L2 92970 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 15236 chr2 27429073 27429177 + 0 NA intron (NM_013392, intron 1 of 17) CpG 573 NM_001321358 29959 Hs.515876 NM_013392 ENSG00000115216 NRBP1 BCON3|MADM|MUDPNP|NRBP nuclear receptor binding protein 1 protein-coding 15451 chr2 43759383 43759385 + 0 NA intron (NM_172069, intron 27 of 29) L2a|LINE|L2 -14655 NM_016008 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3|SRTD15 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 19515 chr3 50316778 50316785 + 0 NA Intergenic Intergenic -4400 NM_153281 3373 Hs.75619 NM_033159 ENSG00000114378 HYAL1 HYAL-1|LUCA1|MPS9|NAT6 hyaluronoglucosaminidase 1 protein-coding 1277 chr1 89820882 89820986 + 0 NA promoter-TSS (NM_001134479) promoter-TSS (NM_001134479) -80 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family member D protein-coding 4878 chr11 13942990 13943094 + 0 NA Intergenic Intergenic -18179 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LOC101928132 - uncharacterized LOC101928132 ncRNA 20300 chr3 141876557 141876728 + 0 NA promoter-TSS (NM_001679) promoter-TSS (NM_001679) 50 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 17035 chr2 211408530 211408701 + 0 NA intron (NM_005235, intron 25 of 27) intron (NM_005235, intron 25 of 27) 791044 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 11217 chr16 30407394 30407395 + 0 NA promoter-TSS (NM_001142305) promoter-TSS (NM_001142305) -20 NM_001142305 51333 Hs.148584 NM_016643 ENSG00000179965 ZNF771 DSC43 zinc finger protein 771 protein-coding 29840 chr9 109556234 109556386 + 0 NA Intergenic L2c|LINE|L2 -44765 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 23314 chr5 139198316 139198480 + 0 NA promoter-TSS (NM_022464) promoter-TSS (NM_022464) -22 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 10786 chr15 98154927 98155107 + 0 NA Intergenic L2a|LINE|L2 -66264 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 20315 chr3 142850441 142850545 + 0 NA intron (NM_013363, intron 2 of 8) L2|LINE|L2 38710 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 28293 chr8 100309939 100310036 + 0 NA 5' UTR (NM_183419, exon 1 of 10) 5' UTR (NM_183419, exon 1 of 10) 179 NM_183419 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 27585 chr8 26577338 26577420 + 0 NA promoter-TSS (NM_001386) promoter-TSS (NM_001386) -445 NM_001386 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 27436 chr8 16518227 16518255 + 0 NA Intergenic LTR43B|LTR|ERV1 -325450 NM_138715 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 15731 chr2 68971722 68971922 + 0 NA Intergenic Intergenic -2751 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 29979 chr9 116280615 116280726 + 0 NA intron (NM_002581, intron 9 of 21) intron (NM_002581, intron 9 of 21) 119936 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 2562 chr1 209416190 209416285 + 0 NA Intergenic Intergenic -12586 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene protein-coding 18467 chr21 31351647 31351751 + 0 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 207278 NM_003253 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 3094 chr1 243255224 243255339 + 0 NA promoter-TSS (NM_006642).2 promoter-TSS (NM_006642).2 125 NM_001042405 9859 Hs.533635 NM_014812 ENSG00000143702 CEP170 FAM68A|KAB|KIAA0470 centrosomal protein 170 protein-coding 23805 chr5 178289004 178289115 + 0 NA intron (NM_173465, intron 3 of 28) intron (NM_173465, intron 3 of 28) -56237 NR_103509 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 20768 chr3 182058710 182058784 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR 106383 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 14110 chr19 11324520 11324670 + 0 NA 3' UTR (NM_004283, exon 5 of 5) 3' UTR (NM_004283, exon 5 of 5) 15073 NM_004283 9545 Hs.744916 NM_004283 ENSG00000105514 RAB3D D2-2|GOV|RAB16|RAD3D RAB3D, member RAS oncogene family protein-coding 27127 chr7 141551335 141551456 + 0 NA 5' UTR (NM_018238, exon 1 of 16) 5' UTR (NM_018238, exon 1 of 16) 117 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 9742 chr14 104826328 104826432 + 0 NA Intergenic CpG 5179 NR_024396 196872 Hs.352220 NR_024396 ENSG00000258701 LINC00638 - long intergenic non-protein coding RNA 638 ncRNA 9813 chr15 30903742 30903892 + 0 NA promoter-TSS (NM_001146094) promoter-TSS (NM_001146094) -35 NM_001146095 22909 Hs.584863 NM_014967 ENSG00000198690 FAN1 KIAA1018|KMIN|MTMR15|hFAN1 FANCD2 and FANCI associated nuclease 1 protein-coding 19710 chr3 96813236 96813417 + 0 NA Intergenic CpG -1255 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 14302 chr19 19663741 19663878 + 0 NA promoter-TSS (NM_020410) promoter-TSS (NM_020410) -115 NM_020410 57130 Hs.501794 NM_020410 ENSG00000105726 ATP13A1 ATP13A|CGI-152 ATPase 13A1 protein-coding 20657 chr3 172097310 172097367 + 0 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 56784 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 1865 chr1 156896756 156896860 + 0 NA intron (NM_001080471, intron 1 of 22) intron (NM_001080471, intron 1 of 22) 3077 NM_001080471 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 30739 chrX 53281563 53281717 + 0 NA promoter-TSS (NM_015075) promoter-TSS (NM_015075) -26 NM_015075 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 1783 chr1 154220621 154220747 + 0 NA promoter-TSS (NM_001287815) promoter-TSS (NM_001287815) 113 NM_001297723 25912 Hs.287471 NM_015449 ENSG00000143612 C1orf43 HSPC012|NICE-3|NS5ATP4|S863-3 chromosome 1 open reading frame 43 protein-coding 18960 chr22 41621152 41621284 + 0 NA promoter-TSS (NM_015704) promoter-TSS (NM_015704) 55 NM_001288978 2547 Hs.292493 NM_001469 ENSG00000196419 XRCC6 CTC75|CTCBF|G22P1|KU70|ML8|TLAA X-ray repair cross complementing 6 protein-coding 30452 chrX 3713599 3713703 + 0 NA promoter-TSS (NM_005044) promoter-TSS (NM_005044) -17 NM_005044 5613 Hs.390788 NM_005044 ENSG00000183943 PRKX PKX1 protein kinase, X-linked protein-coding 12690 chr17 50919752 50919856 + 0 NA Intergenic Intergenic -51826 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 19533 chr3 51983238 51983347 + 0 NA promoter-TSS (NM_001198896) promoter-TSS (NM_001198896) 8 NM_000666 95 Hs.334707 NM_000666 ENSG00000243989 ACY1 ACY-1|ACY1D|HEL-S-5 aminoacylase 1 protein-coding 26538 chr7 87220528 87220672 + 0 NA promoter-TSS (NM_001329473) promoter-TSS (NM_001329473) -13 NM_001329472 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 11120 chr16 22199678 22199819 + 0 NA Intergenic Intergenic -6523 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 8616 chr13 110616407 110616511 + 0 NA intron (NM_018210, intron 1 of 9) intron (NM_018210, intron 1 of 9) 875 NM_001242881 55739 Hs.408324 NM_018210 ENSG00000213995 NAXD CARKD|LP3298 NAD(P)HX dehydratase protein-coding 8988 chr14 51382642 51382805 + 0 NA Intergenic Intergenic 49330 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 23289 chr5 137146446 137146595 + 0 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 18323 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 25699 chr7 12851254 12851358 + 0 NA Intergenic Intergenic 164020 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 13605 chr18 54269396 54269541 + 0 NA promoter-TSS (NM_007195) promoter-TSS (NM_007195) -11 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding 21697 chr4 110198478 110198582 + 0 NA promoter-TSS (NM_001130721) promoter-TSS (NM_001130721) 85 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 17796 chr20 24095793 24095905 + 0 NA Intergenic Intergenic -103918 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 10116 chr15 52337333 52337437 + 0 NA intron (NM_000259, intron 32 of 40) intron (NM_000259, intron 32 of 40) -41587 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 30799 chrX 69032695 69032799 + 0 NA Intergenic Intergenic 132775 NM_145119 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 3492 chr10 28735154 28735207 + 0 NA Intergenic Intergenic -8470 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 16635 chr2 170375287 170375435 + 0 NA intron (NM_001083615, intron 9 of 33) intron (NM_001083615, intron 9 of 33) -24418 NR_110576 101929753 Hs.534101 NR_110576 LOC101929753 - uncharacterized LOC101929753 ncRNA 544 chr1 32179667 32179719 + 0 NA promoter-TSS (NM_175852) promoter-TSS (NM_175852) -51 NM_175852 200081 Hs.17987 NM_175852 ENSG00000084652 TXLNA IL14|TXLN taxilin alpha protein-coding 4150 chr10 97292663 97292674 + 0 NA promoter-TSS (NM_001204300) promoter-TSS (NM_001204300) 5 NM_032900 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 4696 chr11 2420772 2420876 + 0 NA intron (NM_014555, intron 3 of 23) intron (NM_014555, intron 3 of 23) 2221 NM_014555 29850 Hs.272287 NM_014555 ENSG00000070985 TRPM5 LTRPC5|MTR1 transient receptor potential cation channel subfamily M member 5 protein-coding 4370 chr10 112742091 112742195 + 0 NA intron (NM_001318205, intron 7 of 7) intron (NM_001318205, intron 7 of 7) -81353 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 27370 chr8 9555772 9556000 + 0 NA promoter-TSS (NM_003747) promoter-TSS (NM_003747) -49 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 14602 chr19 46793205 46793265 + 0 NA Intergenic Intergenic -4650 NM_005628 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 9331 chr14 72643417 72643521 + 0 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 126649 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 8259 chr13 49444168 49444178 + 0 NA promoter-TSS (NM_001320699) promoter-TSS (NM_001320699) -47 NM_001079670 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 11978 chr17 4858951 4859129 + 0 NA intron (NM_170663, intron 1 of 31) intron (NM_170663, intron 1 of 31) 25700 NM_153827 50488 Hs.443417 NM_015716 ENSG00000141503 MINK1 B55|MAP4K6|MINK|YSK2|ZC3 misshapen like kinase 1 protein-coding 7050 chr12 53079314 53079441 + 0 NA promoter-TSS (NM_032840) promoter-TSS (NM_032840) 43 NM_032840 84926 Hs.343334 NM_032840 ENSG00000167778 SPRYD3 - SPRY domain containing 3 protein-coding 19308 chr3 31981609 31981713 + 0 NA promoter-TSS (NM_001137674) promoter-TSS (NM_001137674) -113 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 20343 chr3 146506722 146506843 + 0 NA Intergenic LTR54|LTR|ERV1 -10791 NM_001199979 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 2635 chr1 212486066 212486229 + 0 NA Intergenic Intergenic 53260 NM_013349 29937 Hs.461787 NM_013349 ENSG00000117691 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 25302 chr6 148746875 148747039 + 0 NA promoter-TSS (NM_005715) promoter-TSS (NM_005715) -178 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 10349 chr15 68586378 68586482 + 0 NA intron (NM_006091, intron 1 of 11) L2c|LINE|L2 7461 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 25085 chr6 122789691 122789707 + 0 NA intron (NM_001286138, intron 1 of 6) CpG 650 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 14585 chr19 46016831 46016860 + 0 NA intron (NM_001267723, intron 10 of 13) intron (NM_001267723, intron 10 of 13) -2087 NR_030412 768217 NR_030412 ENSG00000211580 MIR769 MIRN769|hsa-mir-769|mir-769 microRNA 769 ncRNA 22812 chr5 82396975 82397079 + 0 NA Intergenic Intergenic 117565 NM_001017971 92270 Hs.729805 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 12208 chr17 20698983 20699087 + 0 NA Intergenic Intergenic -13411 NR_073509 100287072 Hs.676308 NR_073509 LOC100287072 - ribosomal protein S6 kinase B1 pseudogene pseudo 13527 chr18 48324772 48324876 + 0 NA intron (NM_001318841, intron 2 of 4) L2b|LINE|L2 84598 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 29190 chr9 71691148 71691288 + 0 NA intron (NM_013390, intron 21 of 23) AluSx|SINE|Alu 77666 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 12466 chr17 40521637 40521739 + 0 NA Intergenic Intergenic -20086 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 10281 chr15 64728321 64728432 + 0 NA Intergenic Intergenic -25095 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 25806 chr7 20353021 20353188 + 0 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -21342 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 20292 chr3 141486154 141486168 + 0 NA promoter-TSS (NM_001303246) promoter-TSS (NM_001303246) -886 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 18841 chr22 36329653 36329680 + 0 NA intron (NM_002473, intron 3 of 40) intron (NM_002473, intron 3 of 40) -42759 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 4876 chr11 13873389 13873538 + 0 NA Intergenic Intergenic 51400 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LOC101928132 - uncharacterized LOC101928132 ncRNA 30341 chr9 135023567 135023671 + 0 NA Intergenic Intergenic -51624 NM_014279 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 21404 chr4 60611872 60612093 + 0 NA Intergenic Tigger3|DNA|TcMar-Tigger -310637 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 30965 chrX 109793334 109793438 + 0 NA Intergenic Intergenic -59983 NM_001318509 2182 Hs.268785 NM_004458 ENSG00000068366 ACSL4 ACS4|FACL4|LACS4|MRX63|MRX68 acyl-CoA synthetase long-chain family member 4 protein-coding 12244 chr17 27497849 27497953 + 0 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 25891 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 7847 chr12 124633371 124633475 + 0 NA Intergenic Intergenic -65959 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 28331 chr8 101205737 101205890 + 0 NA promoter-TSS (NM_001042510) promoter-TSS (NM_001042510) -81 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 6757 chr12 25997688 25997792 + 0 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) 23985 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 26713 chr7 100802232 100802425 + 0 NA TTS (NM_004444) TTS (NM_004444) 25193 NM_004444 2050 Hs.437008 NM_004444 ENSG00000196411 EPHB4 HTK|MYK1|TYRO11 EPH receptor B4 protein-coding 20202 chr3 134427461 134427565 + 0 NA Intergenic Intergenic -10314 NR_039951 100616281 NR_039951 MIR4788 - microRNA 4788 ncRNA 19899 chr3 112781760 112781828 + 0 NA Intergenic Intergenic -32475 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 1314 chr1 92961889 92961906 + 0 NA promoter-TSS (NM_001252273) promoter-TSS (NM_001252273) -375 NM_001252270 388650 Hs.180946 NM_001006605 ENSG00000154511 FAM69A - family with sequence similarity 69 member A protein-coding 8663 chr14 20413122 20413273 + 0 NA intron (NM_001319035, intron 1 of 52) intron (NM_001319035, intron 1 of 52) 223 NM_007110 7011 Hs.508835 NM_007110 ENSG00000129566 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase associated protein 1 protein-coding 20141 chr3 130111509 130111613 + 0 NA promoter-TSS (NR_024252) promoter-TSS (NR_024252) -128 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 2748 chr1 221440150 221440186 + 0 NA Intergenic Intergenic -103872 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 18602 chr22 17084812 17084916 + 0 NA promoter-TSS (NM_014339) promoter-TSS (NM_014339) -95 NM_001289905 23765 Hs.48353 NM_014339 ENSG00000177663 IL17RA CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R interleukin 17 receptor A protein-coding 5102 chr11 32838666 32838770 + 0 NA intron (NM_024081, intron 3 of 5) intron (NM_024081, intron 3 of 5) 8783 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 28338 chr8 101459900 101460004 + 0 NA Intergenic Intergenic -32487 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 22338 chr5 32313067 32313171 + 0 NA promoter-TSS (NM_001040446) promoter-TSS (NM_001040446) -111 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 522 chr1 31397034 31397138 + 0 NA Intergenic L2b|LINE|L2 -12479 NM_001199038 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 11793 chr16 85688978 85689132 + 0 NA promoter-TSS (NM_016095) promoter-TSS (NM_016095) -73 NM_016095 51659 Hs.433180 NM_016095 ENSG00000131153 GINS2 HSPC037|PSF2|Pfs2 GINS complex subunit 2 protein-coding 7817 chr12 122974646 122974793 + 0 NA promoter-TSS (NM_001304834) promoter-TSS (NM_001304834) 16 NM_001304835 79676 Hs.524817 NM_024623 ENSG00000111325 OGFOD2 - 2-oxoglutarate and iron dependent oxygenase domain containing 2 protein-coding 17743 chr20 20603546 20603667 + 0 NA intron (NM_020343, intron 15 of 39) MLT1H|LTR|ERVL-MaLR 109017 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 1423 chr1 101357572 101357676 + 0 NA intron (NR_126402, intron 4 of 4) intron (NR_126402, intron 4 of 4) 33787 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 19164 chr3 11720617 11720688 + 0 NA 5' UTR (NM_014667, exon 1 of 6) 5' UTR (NM_014667, exon 1 of 6) 116 NM_001284390 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 18149 chr20 48538602 48538698 + 0 NA Intergenic LTR23|LTR|ERV1 178739 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 24296 chr6 29465385 29465489 + 0 NA Intergenic MER41B|LTR|ERV1 8282 NM_001318022 26716 Hs.434715 NM_030883 ENSG00000204688 OR2H1 6M1-16|HS6M1-16|OLFR42A-9004-14|OLFR42A-9004.14/9026.2|OR2H6|OR2H8|OR6-2|dJ994E9.4 olfactory receptor family 2 subfamily H member 1 protein-coding 16620 chr2 168964593 168964697 + 0 NA intron (NM_003742, intron 17 of 27) intron (NM_003742, intron 17 of 27) 63405 NM_001081686 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 6917 chr12 45415421 45415584 + 0 NA intron (NM_001142678, intron 16 of 19) intron (NM_001142678, intron 16 of 19) 122819 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 24682 chr6 52089928 52090028 + 0 NA Intergenic LTR16B2|LTR|ERVL -2353 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|TIGM1 polycystic kidney and hepatic disease 1 (autosomal recessive) protein-coding 22154 chr5 1799918 1800022 + 0 NA promoter-TSS (NM_032479) promoter-TSS (NM_032479) -128 NM_032479 64979 Hs.719465 NM_032479 ENSG00000171421 MRPL36 BRIP1|L36mt|MRP-L36|PRPL36|RPMJ mitochondrial ribosomal protein L36 protein-coding 8565 chr13 106393945 106394026 + 0 NA Intergenic Intergenic 17422 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 29956 chr9 115291848 115291979 + 0 NA 5' UTR (NM_017418, exon 3 of 8) 5' UTR (NM_017418, exon 3 of 8) 150095 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 27495 chr8 20303977 20304123 + 0 NA Intergenic CpG 28277 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 2884 chr1 228059932 228060039 + 0 NA 3' UTR (NM_033131, exon 4 of 4) 3' UTR (NM_033131, exon 4 of 4) -22675 NM_001658 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 2661 chr1 214213297 214213451 + 0 NA Intergenic L2c|LINE|L2 -67848 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 25513 chr7 149306 149315 + 0 NA promoter-TSS (NR_108064).2 promoter-TSS (NR_108064).2 128 NR_134325 102723672 Hs.605204 NR_134325 LOC102723672 - uncharacterized LOC102723672 ncRNA 18634 chr22 19806574 19806734 + 0 NA intron (NM_053004, intron 6 of 7) intron (NM_053004, intron 6 of 7) 48194 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 C22orf29 BOP chromosome 22 open reading frame 29 protein-coding 28825 chr8 143948595 143948682 + 0 NA intron (NM_000445, intron 2 of 32) intron (NM_000445, intron 2 of 32) 2238 NM_201380 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 27002 chr7 130026050 130026247 + 0 NA intron (NM_016478, intron 6 of 9) intron (NM_016478, intron 6 of 9) 25303 NM_001282190 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 HSPC216|NIPA zinc finger C3HC-type containing 1 protein-coding 16312 chr2 130229257 130229375 + 0 NA Intergenic CpG -30855 NM_207312 112714 Hs.433336 NM_207312 ENSG00000152086 TUBA3E - tubulin alpha 3e protein-coding 27041 chr7 134174887 134175022 + 0 NA intron (NM_144648, intron 8 of 19) L3|LINE|CR1 47602 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 24492 chr6 37353900 37354002 + 0 NA promoter-TSS (NR_046399) promoter-TSS (NR_046399) -21 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 18326 chr20 58112273 58112287 + 0 NA Intergenic MER81|DNA|hAT-Blackjack -38647 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 1324 chr1 93847196 93847300 + 0 NA promoter-TSS (NM_001261408) promoter-TSS (NM_001261408) -98 NM_001261408 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 23774 chr5 176416653 176416806 + 0 NA promoter-TSS (NM_001834) promoter-TSS (NM_001834) -160 NM_007097 1212 Hs.484241 NM_001834 ENSG00000175416 CLTB LCB clathrin light chain B protein-coding 11483 chr16 66873293 66873412 + 0 NA Intergenic CpG -7009 NM_001329929 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 21560 chr4 87422781 87422885 + 0 NA 5' UTR (NM_001248011, exon 1 of 7) 5' UTR (NM_001248011, exon 1 of 7) 236 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 18933 chr22 40541433 40541584 + 0 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -7628 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MKL1 BSAC|MAL|MRTF-A megakaryoblastic leukemia (translocation) 1 protein-coding 20985 chr3 192917142 192917224 + 0 NA intron (NM_178496, intron 1 of 1) CpG 978 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 26535 chr7 87059578 87059728 + 0 NA promoter-TSS (NM_001142749) promoter-TSS (NM_001142749) 45 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 15641 chr2 62654631 62654735 + 0 NA Intergenic Intergenic -19168 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 30389 chr9 137423082 137423186 + 0 NA promoter-TSS (NM_001256068) promoter-TSS (NM_001256068) 128 NR_104599 54932 Hs.495553 NM_017820 ENSG00000187609 EXD3 mut-7 exonuclease 3'-5' domain containing 3 protein-coding 12603 chr17 47649545 47649700 + 0 NA promoter-TSS (NM_002265) promoter-TSS (NM_002265) -216 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 10711 chr15 90665576 90665735 + 0 NA TTS (NR_120371) TTS (NR_120371) 5421 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 11988 chr17 5439276 5439427 + 0 NA promoter-TSS (NM_001212) promoter-TSS (NM_001212) -200 NM_001212 708 Hs.555866 NM_001212 ENSG00000108561 C1QBP GC1QBP|HABP1|SF2p32|gC1Q-R|gC1qR|p32 complement C1q binding protein protein-coding 30329 chr9 133944836 133944993 + 0 NA intron (NM_003371, intron 1 of 26) intron (NM_003371, intron 1 of 26) 47410 NM_003371 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 8371 chr13 75762678 75762769 + 0 NA intron (NM_001306080, intron 4 of 30) intron (NM_001306080, intron 4 of 30) 2062 NM_015842 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 20144 chr3 130112568 130112640 + 0 NA Intergenic Intergenic -1171 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 4202 chr10 99779918 99780078 + 0 NA Intergenic L1MCa|LINE|L1 -2600 NM_000392 1244 Hs.368243 NM_000392 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP binding cassette subfamily C member 2 protein-coding 13255 chr18 9475240 9475379 + 0 NA promoter-TSS (NM_006788) promoter-TSS (NM_006788) -223 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 13600 chr18 54134267 54134371 + 0 NA Intergenic Intergenic 88093 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 29313 chr9 77977531 77977592 + 0 NA intron (NM_002072, intron 1 of 6) intron (NM_002072, intron 1 of 6) 53888 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 21113 chr4 1871104 1871208 + 0 NA promoter-TSS (NM_001042424) promoter-TSS (NM_001042424) -240 NM_001042424 7468 Hs.113876 NM_007331 ENSG00000109685 NSD2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 nuclear receptor binding SET domain protein 2 protein-coding 3477 chr10 27252537 27252619 + 0 NA promoter-TSS (NR_003525) promoter-TSS (NR_003525) -272 NR_003525 387646 Hs.631829 NM_001006604 ENSG00000230445 LRRC37A6P LRRC37E leucine rich repeat containing 37 member A6, pseudogene pseudo 459 chr1 27557284 27557388 + 0 NA intron (NM_001029882, intron 3 of 6) intron (NM_001029882, intron 3 of 6) 46158 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 14801 chr19 55189488 55189648 + 0 NA intron (NM_001161440, intron 10 of 17) L2a|LINE|L2 -9216 NM_003180 6861 Hs.631566 NM_003180 ENSG00000129990 SYT5 - synaptotagmin 5 protein-coding 10321 chr15 66883604 66883703 + 0 NA Intergenic Intergenic 72862 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 18281 chr20 55540155 55540198 + 0 NA Intergenic Intergenic -112979 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 29863 chr9 111356761 111356865 + 0 NA Intergenic L1MEb|LINE|L1 -28380 NM_205859 26248 Hs.381312 NM_205859 ENSG00000171133 OR2K2 HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P olfactory receptor family 2 subfamily K member 2 protein-coding 18413 chr21 5154797 5154941 + 0 NA promoter-TSS (NM_005049) promoter-TSS (NM_005049) -139 NM_005049 5822 Hs.449076 NM_005049 ENSG00000241945 PWP2 EHOC-17|PWP2H|UTP1 PWP2 periodic tryptophan protein homolog (yeast) protein-coding 22539 chr5 55152343 55152447 + 0 NA intron (NM_152623, intron 2 of 11) MIR|SINE|MIR -7723 NM_001008397 493869 Hs.289044 NM_001008397 ENSG00000164294 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 1753 chr1 152954473 152954623 + 0 NA Intergenic MIR3|SINE|MIR -16105 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 18302 chr20 56788410 56788542 + 0 NA Intergenic Intergenic 159174 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 9967 chr15 42057535 42057639 + 0 NA Intergenic Intergenic -6884 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 29016 chr9 28213103 28213207 + 0 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 506150 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 8302 chr13 52850797 52850890 + 0 NA Intergenic CpG -2203 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 2688 chr1 215583505 215583641 + 0 NA intron (NM_016121, intron 8 of 17) MER41B|LTR|ERV1 16194 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 17161 chr2 222939407 222939511 + 0 NA intron (NM_203372, intron 15 of 15) intron (NM_203372, intron 15 of 15) 78445 NM_203372 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|PRO2194 acyl-CoA synthetase long-chain family member 3 protein-coding 4367 chr10 112389515 112389652 + 0 NA intron (NM_016234, intron 1 of 20) intron (NM_016234, intron 1 of 20) 13385 NM_016234 51703 Hs.11638 NM_016234 ENSG00000197142 ACSL5 ACS2|ACS5|FACL5 acyl-CoA synthetase long-chain family member 5 protein-coding 26287 chr7 54180924 54181028 + 0 NA Intergenic Intergenic 21445 NR_004422 3262 Hs.742598 NR_004422 HPVC1 HPV18E5L|PE5L human papillomavirus (type 18) E5 central sequence-like 1 ncRNA 23165 chr5 128349303 128349472 + 0 NA exon (NM_001999, exon 23 of 65) exon (NM_001999, exon 23 of 65) 188655 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 8559 chr13 106151449 106151542 + 0 NA Intergenic Intergenic -225068 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 15876 chr2 84223298 84223328 + 0 NA Intergenic L1M4b|LINE|L1 -67369 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 15393 chr2 38875870 38876014 + 0 NA promoter-TSS (NM_001145450) promoter-TSS (NM_001145450) -8 NM_001329963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 28451 chr8 115716794 115716898 + 0 NA Intergenic Intergenic -47818 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 4244 chr10 102132872 102133004 + 0 NA promoter-TSS (NM_001288727) promoter-TSS (NM_001288727) -56 NM_015062 23082 Hs.533551 NM_015062 ENSG00000148840 PPRC1 PRC peroxisome proliferator-activated receptor gamma, coactivator-related 1 protein-coding 12968 chr17 74282877 74282925 + 0 NA intron (NM_023036, intron 2 of 13) intron (NM_023036, intron 2 of 13) 8654 NM_001172810 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 27197 chr7 149065272 149065395 + 0 NA Intergenic Intergenic 25444 NM_152411 136051 Hs.729572 NM_152411 ENSG00000197362 ZNF786 - zinc finger protein 786 protein-coding 24273 chr6 28136800 28136900 + 0 NA non-coding (NR_103455, exon 1 of 3) non-coding (NR_103455, exon 1 of 3) 466 NR_103455 100129195 Hs.659413 NR_103455 ENSG00000269293 ZSCAN16-AS1 - ZSCAN16 antisense RNA 1 ncRNA 18935 chr22 40651845 40651866 + 0 NA Intergenic Intergenic -15136 NM_001282661 57591 Hs.654688 NM_020831 ENSG00000196588 MKL1 BSAC|MAL|MRTF-A megakaryoblastic leukemia (translocation) 1 protein-coding 3441 chr10 24483864 24484013 + 0 NA intron (NM_001282768, intron 6 of 17) intron (NM_001282768, intron 6 of 17) 17433 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 15210 chr2 26503586 26503690 + 0 NA intron (NM_194248, intron 6 of 46) CpG -25596 NM_004802 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 16696 chr2 175414977 175415081 + 0 NA Intergenic Intergenic -233267 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5G3 P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) protein-coding 21451 chr4 74624907 74625011 + 0 NA Intergenic Intergenic 169727 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 16353 chr2 134391794 134391898 + 0 NA intron (NM_002410, intron 10 of 15) MIRc|SINE|MIR 137587 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 17471 chr20 2664190 2664232 + 0 NA promoter-TSS (NM_006899) promoter-TSS (NM_006899) 12 NM_001258384 3420 Hs.436405 NM_006899 ENSG00000101365 IDH3B RP46 isocitrate dehydrogenase 3 (NAD(+)) beta protein-coding 16467 chr2 151828426 151828560 + 0 NA promoter-TSS (NM_001037174) promoter-TSS (NM_001037174) 2 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 27937 chr8 63038798 63038950 + 0 NA 5' UTR (NM_003878, exon 1 of 9) 5' UTR (NM_003878, exon 1 of 9) 177 NM_003878 8836 Hs.78619 NM_003878 ENSG00000137563 GGH GH gamma-glutamyl hydrolase protein-coding 18597 chr21 46458625 46458778 + 0 NA promoter-TSS (NM_206891) promoter-TSS (NM_206891) -248 NM_206890 23181 Hs.189585 NM_015151 ENSG00000160305 DIP2A C21orf106|DIP2 disco interacting protein 2 homolog A protein-coding 14759 chr19 52962872 52963018 + 0 NA promoter-TSS (NM_001031665) promoter-TSS (NM_001031665) -34 NM_001202457 125893 Hs.655592 NM_001031665 ENSG00000180257 ZNF816 ZNF816A zinc finger protein 816 protein-coding 2163 chr1 181073754 181073858 + 0 NA Intergenic MIR3|SINE|MIR -14696 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 11623 chr16 74480247 74480389 + 0 NA non-coding (NR_027264, exon 11 of 27) non-coding (NR_027264, exon 11 of 27) -58848 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 26615 chr7 94301128 94301282 + 0 NA Intergenic Intergenic -93356 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 OI4 collagen type I alpha 2 chain protein-coding 20718 chr3 177776662 177776766 + 0 NA Intergenic Intergenic -40151 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 13591 chr18 51531635 51531739 + 0 NA intron (NR_040074, intron 1 of 2) intron (NR_040074, intron 1 of 2) 139645 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 12843 chr17 64130055 64130208 + 0 NA promoter-TSS (NM_001433) promoter-TSS (NM_001433) 11 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 11127 chr16 22789607 22789711 + 0 NA Intergenic MER5B|DNA|hAT-Charlie -24880 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 26840 chr7 112939937 112939975 + 0 NA promoter-TSS (NM_152556) promoter-TSS (NM_152556) -79 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60 base methyltransferase of 25S rRNA 2 homolog protein-coding 21304 chr4 39540333 39540423 + 0 NA intron (NR_047679, intron 2 of 4) HERVK3-int|LTR|ERVK 12539 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 20957 chr3 190585914 190586055 + 0 NA intron (NM_001167931, intron 3 of 11) intron (NM_001167931, intron 3 of 11) 71933 NM_001167931 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 6625 chr12 12804684 12804814 + 0 NA Intergenic Intergenic -8597 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 12335 chr17 32960988 32961092 + 0 NA Intergenic Intergenic -30824 NM_001317226 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 26885 chr7 116730698 116730802 + 0 NA intron (NM_001127500, intron 2 of 20) L2c|LINE|L2 58360 NM_001324401 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 21554 chr4 87007136 87007240 + 0 NA 5' UTR (NM_001313959, exon 1 of 20) 5' UTR (NM_001313959, exon 1 of 20) 187 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 14218 chr19 16472109 16472213 + 0 NA promoter-TSS (NM_001258374) promoter-TSS (NM_001258374) -149 NR_047665 58513 Hs.654639 NM_021235 ENSG00000127527 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15 like 1 protein-coding 25074 chr6 119830700 119830849 + 0 NA intron (NR_134600, intron 2 of 3) L1PBa|LINE|L1 -184405 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 4008 chr10 84527551 84527703 + 0 NA Intergenic HERV17-int|LTR|ERV1 102445 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 9134 chr14 60760777 60760881 + 0 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 26088 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1, CDK activating kinase assembly factor protein-coding 2826 chr1 225449404 225449508 + 0 NA Intergenic Intergenic -20601 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 10288 chr15 65029510 65029614 + 0 NA promoter-TSS (NM_139242) promoter-TSS (NM_139242) 77 NM_139242 123263 Hs.531615 NM_139242 ENSG00000103707 MTFMT COXPD15|FMT1 mitochondrial methionyl-tRNA formyltransferase protein-coding 9637 chr14 97978530 97978634 + 0 NA promoter-TSS (NR_015430) promoter-TSS (NR_015430) -458 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 17338 chr2 236777124 236777140 + 0 NA Intergenic Intergenic 207395 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 15257 chr2 28392738 28392892 + 0 NA promoter-TSS (NM_005253) promoter-TSS (NM_005253) -97 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 9281 chr14 68951143 68951287 + 0 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 28151 NM_001130004 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 25660 chr7 7566808 7566994 + 0 NA promoter-TSS (NM_019005) promoter-TSS (NM_019005) -84 NM_019005 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4 meiosis regulator for oocyte development protein-coding 4895 chr11 14530082 14530186 + 0 NA intron (NM_148976, intron 2 of 10) LTR78|LTR|ERV1 -9689 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 6648 chr12 13196446 13196532 + 0 NA promoter-TSS (NM_001423) promoter-TSS (NM_001423) -179 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 30164 chr9 128035192 128035336 + 0 NA Intergenic Intergenic 32056 NM_197956 203245 Hs.373606 NM_197956 ENSG00000171169 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 2132 chr1 178530097 178530233 + 0 NA Intergenic Intergenic -12631 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 ncRNA 13587 chr18 51236349 51236501 + 0 NA Intergenic Intergenic -38744 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 23091 chr5 119452420 119452526 + 0 NA promoter-TSS (NM_001199292) promoter-TSS (NM_001199292) -24 NM_001292028 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 31014 chrX 119943658 119943748 + 0 NA promoter-TSS (NM_024528) promoter-TSS (NM_024528) 69 NM_024528 79576 Hs.522771 NM_024528 ENSG00000101882 NKAP - NFKB activating protein protein-coding 27016 chr7 130996927 130997053 + 0 NA intron (NR_109855, intron 2 of 4) Charlie15b|DNA|hAT-Charlie 83526 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 14083 chr19 10625384 10625537 + 0 NA promoter-TSS (NM_020428) promoter-TSS (NM_020428) -35 NM_020428 57153 Hs.534560 NM_020428 ENSG00000129353 SLC44A2 CTL2|PP1292 solute carrier family 44 member 2 protein-coding 6994 chr12 50283438 50283559 + 0 NA promoter-TSS (NM_001113546) promoter-TSS (NM_001113546) 72 NM_001113546 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|SREBP3 LIM domain and actin binding 1 protein-coding 19083 chr3 4493213 4493337 + 0 NA promoter-TSS (NR_108075) promoter-TSS (NR_108075) -73 NM_001099952 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 3751 chr10 61782132 61782236 + 0 NA Intergenic Intergenic -119070 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 6115 chr11 114354259 114354363 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR 25728 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 30368 chr9 136849267 136849413 + 0 NA non-coding (NR_109808, exon 1 of 3) non-coding (NR_109808, exon 1 of 3) 524 NM_001287343 29085 Hs.409834 NM_014172 ENSG00000054148 PHPT1 CGI-202|HEL-S-132P|HSPC141|PHP|PHP14 phosphohistidine phosphatase 1 protein-coding 13811 chr18 77132082 77132186 + 0 NA intron (NM_001025100, intron 1 of 3) CpG 684 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 24841 chr6 81451958 81452064 + 0 NA Intergenic Intergenic 300700 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 FAM46A C6orf37|XTP11 family with sequence similarity 46 member A protein-coding 17605 chr20 11207880 11208046 + 0 NA Intergenic Intergenic 65420 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 5674 chr11 74943123 74943287 + 0 NA intron (NM_182969, intron 2 of 18) intron (NM_182969, intron 2 of 18) 5982 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 550 chr1 32291917 32292062 + 0 NA promoter-TSS (NM_004964) promoter-TSS (NM_004964) -118 NM_004964 3065 Hs.88556 NM_004964 ENSG00000116478 HDAC1 GON-10|HD1|RPD3|RPD3L1 histone deacetylase 1 protein-coding 10500 chr15 78375161 78375282 + 0 NA Intergenic L2c|LINE|L2 34897 NM_004378 1381 Hs.346950 NM_004378 ENSG00000166426 CRABP1 CRABP|CRABP-I|CRABPI|RBP5 cellular retinoic acid binding protein 1 protein-coding 2083 chr1 174022451 174022452 + 0 NA Intergenic CpG -29379 NM_001300850 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 23729 chr5 172733673 172733777 + 0 NA Intergenic Intergenic -21778 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 17295 chr2 233251527 233251673 + 0 NA promoter-TSS (NM_001190266) promoter-TSS (NM_001190266) 29 NM_030803 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 9916 chr15 40108939 40109098 + 0 NA promoter-TSS (NM_001003943) promoter-TSS (NM_001003943) -134 NM_001003943 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 16558 chr2 162027859 162027963 + 0 NA intron (NM_001935, intron 10 of 25) intron (NM_001935, intron 10 of 25) 46631 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 21214 chr4 17577336 17577452 + 0 NA promoter-TSS (NM_015907) promoter-TSS (NM_015907) 90 NM_015907 51056 Hs.570791 NM_015907 ENSG00000002549 LAP3 HEL-S-106|LAP|LAPEP|PEPS leucine aminopeptidase 3 protein-coding 27469 chr8 19013619 19013773 + 0 NA promoter-TSS (NM_015310) promoter-TSS (NM_015310) -10 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 18381 chr20 62302747 62302814 + 0 NA promoter-TSS (NM_001281437) promoter-TSS (NM_001281437) -116 NM_175573 11047 Hs.90107 NM_007002 ENSG00000130706 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 12092 chr17 9646026 9646068 + 0 NA exon (NM_001267576, exon 1 of 15) exon (NM_001267576, exon 1 of 15) 510 NM_001267576 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 25152 chr6 130482837 130482941 + 0 NA Intergenic MLT2F|LTR|ERVL 45772 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 18011 chr20 40631502 40631565 + 0 NA Intergenic Intergenic 57707 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 19735 chr3 98593637 98593808 + 0 NA promoter-TSS (NM_000097) promoter-TSS (NM_000097) -111 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 12633 chr17 48908345 48908402 + 0 NA promoter-TSS (NM_023079) promoter-TSS (NM_023079) 4 NM_023079 65264 Hs.514297 NM_023079 ENSG00000159202 UBE2Z HOYS7|USE1 ubiquitin conjugating enzyme E2 Z protein-coding 958 chr1 59151157 59151261 + 0 NA Intergenic Intergenic -4402 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 1736 chr1 152051402 152051550 + 0 NA Intergenic Intergenic -14441 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 16710 chr2 177172334 177172430 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR -40312 NM_001330247 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 24113 chr6 16761908 16762012 + 0 NA promoter-TSS (NM_000332) promoter-TSS (NM_000332) -470 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 12271 chr17 28728951 28729087 + 0 NA intron (NM_178170, intron 1 of 14) CpG 205 NM_178170 284086 Hs.448468 NM_178170 ENSG00000160602 NEK8 JCK|NEK12A|NPHP9|RHPD2 NIMA related kinase 8 protein-coding 3299 chr10 13302346 13302470 + 0 NA Intergenic CpG -2278 NM_001323082 5264 Hs.498732 NM_006214 ENSG00000107537 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 592 chr1 34200066 34200170 + 0 NA intron (NM_001134734, intron 2 of 6) L2b|LINE|L2 23166 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 12026 chr17 7252008 7252112 + 0 NA promoter-TSS (NM_203415) promoter-TSS (NM_203415) 7 NM_203415 23587 Hs.417029 NM_015362 ENSG00000170291 ELP5 C17orf81|DERP6|HSPC002|MST071|MSTP071 elongator acetyltransferase complex subunit 5 protein-coding 10236 chr15 62066894 62066998 + 0 NA promoter-TSS (NM_207322) promoter-TSS (NM_207322) -31 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 7362 chr12 86669090 86669194 + 0 NA intron (NM_013244, intron 1 of 6) L1PA15-16|LINE|L1 169762 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 10153 chr15 56327866 56327943 + 0 NA Intergenic L1PA2|LINE|L1 -37520 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 10231 chr15 61556172 61556257 + 0 NA Intergenic L2c|LINE|L2 -326911 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 20405 chr3 151219208 151219312 + 0 NA intron (NM_001081455, intron 2 of 2) intron (NM_001081455, intron 2 of 2) -16059 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 11765 chr16 84186979 84187114 + 0 NA promoter-TSS (NM_139353) promoter-TSS (NM_139353) 24 NM_139353 9013 Hs.153022 NM_005679 ENSG00000103168 TAF1C MGC:39976|SL1|TAFI110|TAFI95 TATA-box binding protein associated factor, RNA polymerase I subunit C protein-coding 13785 chr18 74806825 74806929 + 0 NA intron (NM_001146189, intron 3 of 6) intron (NM_001146189, intron 3 of 6) 175914 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 8512 chr13 100875921 100876025 + 0 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 68391 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 15365 chr2 37671346 37671485 + 0 NA intron (NM_001270436, intron 1 of 1) CpG 784 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 17158 chr2 222837890 222837994 + 0 NA Intergenic L2c|LINE|L2 -23072 NM_004457 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|PRO2194 acyl-CoA synthetase long-chain family member 3 protein-coding 7280 chr12 75954104 75954251 + 0 NA Intergenic Intergenic 77599 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 21904 chr4 151540858 151540879 + 0 NA intron (NM_001109977, intron 3 of 13) LTR101_Mam|LTR|ERVL 131622 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 23782 chr5 177022616 177022791 + 0 NA promoter-TSS (NM_001308218) promoter-TSS (NM_001308218) 23 NR_131773 23567 Hs.484259 NM_012279 ENSG00000113761 ZNF346 JAZ|Zfp346 zinc finger protein 346 protein-coding 8536 chr13 103287949 103287949 + 0 NA Intergenic MIRc|SINE|MIR -137251 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 8887 chr14 36570237 36570351 + 0 NA Intergenic Intergenic 12320 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 1205 chr1 85259678 85259844 + 0 NA promoter-TSS (NM_198077) promoter-TSS (NM_198077) -89 NR_024113 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 25709 chr7 13850276 13850403 + 0 NA Intergenic Intergenic 136175 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 22680 chr5 69189739 69189795 + 0 NA exon (NM_022909, exon 1 of 9) exon (NM_022909, exon 1 of 9) 219 NM_022909 64946 Hs.631967 NM_022909 ENSG00000153044 CENPH - centromere protein H protein-coding 24993 chr6 108746544 108746648 + 0 NA Intergenic Intergenic -5058 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 23190 chr5 131219540 131219644 + 0 NA Intergenic Intergenic -44417 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 18028 chr20 41182375 41182479 + 0 NA 3' UTR (NM_015035, exon 4 of 4) 3' UTR (NM_015035, exon 4 of 4) 13404 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 31081 chrX 134512643 134512747 + 0 NA Intergenic Intergenic 27567 NR_030587 100126302 NR_030587 ENSG00000216001 MIR450B MIRN450B|mir-450b microRNA 450b ncRNA 18851 chr22 36462274 36462370 + 0 NA Intergenic Intergenic 19318 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 3625 chr10 43854303 43854407 + 0 NA Intergenic Intergenic -5056 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 22034 chr4 175872184 175872288 + 0 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) -59122 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 18858 chr22 36860158 36860262 + 0 NA promoter-TSS (NM_013416) promoter-TSS (NM_013416) -778 NM_013416 4689 Hs.474781 NM_000631 ENSG00000100365 NCF4 CGD3|NCF|P40PHOX|SH3PXD4 neutrophil cytosolic factor 4 protein-coding 10164 chr15 57485989 57486146 + 0 NA intron (NM_032866, intron 8 of 18) (AGTCAGG)n|Simple_repeat|Simple_repeat -105837 NR_104368 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 25959 chr7 30028290 30028292 + 0 NA promoter-TSS (NM_001197026) promoter-TSS (NM_001197026) -70 NM_032639 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 25792 chr7 19958323 19958427 + 0 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) 182051 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 4728 chr11 5280685 5280822 + 0 NA Intergenic Intergenic -10610 NM_005330 3046 Hs.655195 NM_005330 ENSG00000213931 HBE1 HBE hemoglobin subunit epsilon 1 protein-coding 31060 chrX 130903179 130903336 + 0 NA promoter-TSS (NM_001281736) promoter-TSS (NM_001281736) 60 NM_001281736 10495 Hs.171458 NM_006375 ENSG00000165675 ENOX2 APK1|COVA1|tNOX ecto-NOX disulfide-thiol exchanger 2 protein-coding 3329 chr10 14878759 14878870 + 0 NA promoter-TSS (NM_001193424) promoter-TSS (NM_001193424) 31 NR_034181 79723 Hs.554883 NM_024670 ENSG00000152455 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 protein-coding 2091 chr1 174964604 174964752 + 0 NA promoter-TSS (NM_001243764) promoter-TSS (NM_001243764) -90 NM_001243764 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 22783 chr5 80247304 80247494 + 0 NA intron (NM_001174071, intron 1 of 12) intron (NM_001174071, intron 1 of 12) 8683 NR_126061 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 1971 chr1 164648802 164648899 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 89490 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 4161 chr10 97542337 97542355 + 0 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) -30095 NM_001291218 26287 Hs.73708 NM_020349 ENSG00000165887 ANKRD2 ARPP ankyrin repeat domain 2 protein-coding 29847 chr9 110255498 110255640 + 0 NA intron (NM_001244938, intron 1 of 3) CpG 1071 NM_003329 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 24655 chr6 47670166 47670270 + 0 NA intron (NM_153839, intron 2 of 10) intron (NM_153839, intron 2 of 10) 13628 NM_153839 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 24178 chr6 21738936 21739065 + 0 NA intron (NR_015410, intron 2 of 11) intron (NR_015410, intron 2 of 11) 72556 NR_015410 401237 Hs.712707 NR_015410 ENSG00000272168 CASC15 LINC00340 cancer susceptibility candidate 15 (non-protein coding) ncRNA 16563 chr2 162245884 162245988 + 0 NA Intergenic MER117|DNA|hAT-Charlie -2379 NM_001291807 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 9626 chr14 96363338 96363527 + 0 NA promoter-TSS (NM_001271905) promoter-TSS (NM_001271905) -20 NM_001271906 51527 Hs.4104 NM_016472 ENSG00000100744 GSKIP C14orf129|HSPC210 GSK3B interacting protein protein-coding 21256 chr4 25160420 25160427 + 0 NA promoter-TSS (NR_037934) promoter-TSS (NR_037934) 159 NM_016955 51091 Hs.253305 NM_016955 ENSG00000109618 SEPSECS LP|PCH2D|SLA|SLA/LP Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein-coding 16412 chr2 143901339 143901504 + 0 NA Intergenic MER39|LTR|ERV1 -35646 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 27412 chr8 12754033 12754137 + 0 NA intron (NR_138256, intron 1 of 10) CpG 1357 NM_001329976 91694 Hs.180178 NM_152271 ENSG00000154359 LONRF1 RNF191 LON peptidase N-terminal domain and ring finger 1 protein-coding 28724 chr8 133297328 133297458 + 0 NA promoter-TSS (NM_001135242) promoter-TSS (NM_001135242) -89 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 9616 chr14 95561079 95561203 + 0 NA Intergenic Intergenic 26155 NM_016417 51218 Hs.744943 NM_016417 ENSG00000182512 GLRX5 C14orf87|FLB4739|GRX5|PR01238|PRO1238|PRSA|SIDBA3|SPAHGC glutaredoxin 5 protein-coding 30086 chr9 124652755 124652791 + 0 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) -5663 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 17599 chr20 10924776 10924867 + 0 NA Intergenic Intergenic -15549 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 21369 chr4 53476754 53476858 + 0 NA exon (NM_032622, exon 8 of 10) exon (NM_032622, exon 8 of 10) -23271 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 9270 chr14 68549113 68549217 + 0 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 79622 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 16454 chr2 150126525 150126629 + 0 NA Intergenic Intergenic 361118 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 30703 chrX 49059956 49060060 + 0 NA intron (NM_001163323, intron 1 of 9) intron (NM_001163323, intron 1 of 9) 1042 NM_001163322 90060 Hs.522643 NM_033626 ENSG00000147144 CCDC120 JM11 coiled-coil domain containing 120 protein-coding 16079 chr2 105977374 105977474 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -88233 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 C2orf40 ECRG4 chromosome 2 open reading frame 40 protein-coding 11635 chr16 74998987 74999008 + 0 NA promoter-TSS (NM_032268) promoter-TSS (NM_032268) -20 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 27167 chr7 143415907 143416107 + 0 NA intron (NR_033897, intron 2 of 4) intron (NR_033897, intron 2 of 4) -7115 NM_005232 2041 Hs.89839 NM_005232 ENSG00000146904 EPHA1 EPH|EPHT|EPHT1 EPH receptor A1 protein-coding 31033 chrX 123803565 123803682 + 0 NA Intergenic Intergenic -56189 NM_001204401 331 Hs.356076 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 5657 chr11 73983254 73983350 + 0 NA promoter-TSS (NM_003355) promoter-TSS (NM_003355) -458 NM_003355 7351 Hs.80658 NM_003355 ENSG00000175567 UCP2 BMIQ4|SLC25A8|UCPH uncoupling protein 2 protein-coding 29496 chr9 89435679 89435783 + 0 NA intron (NM_006378, intron 2 of 17) intron (NM_006378, intron 2 of 17) 43965 NM_006378 10507 Hs.494406 NM_006378 ENSG00000187764 SEMA4D C9orf164|CD100|M-sema-G|SEMAJ|coll-4 semaphorin 4D protein-coding 20234 chr3 138068677 138068778 + 0 NA TTS (NM_001170538) TTS (NM_001170538) 44753 NM_001170538 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2 DAZ interacting zinc finger protein 1 like protein-coding 2368 chr1 201346478 201346582 + 0 NA Intergenic Intergenic 31170 NM_001276346 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 14307 chr19 19865723 19865849 + 0 NA promoter-TSS (NM_021047) promoter-TSS (NM_021047) -44 NM_001331134 56242 Hs.301059 NM_021047 ENSG00000256771 ZNF253 BMZF-1|BMZF1|ZNF411 zinc finger protein 253 protein-coding 29358 chr9 81410341 81410445 + 0 NA Intergenic Intergenic 279142 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 8985 chr14 51095048 51095160 + 0 NA 5' UTR (NM_015163, exon 1 of 10) 5' UTR (NM_015163, exon 1 of 10) 600 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 9977 chr15 42737181 42737216 + 0 NA promoter-TSS (NM_138477) promoter-TSS (NM_138477) 21 NM_138477 146059 Hs.599232 NM_138477 ENSG00000140326 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 24469 chr6 36667119 36667239 + 0 NA Intergenic Intergenic 7947 NR_109836 101154753 Hs.741557 NR_109836 ENSG00000281450 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 6633 chr12 12883535 12883554 + 0 NA Intergenic Intergenic -7478 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 17654 chr20 14289046 14289181 + 0 NA intron (NM_080676, intron 3 of 16) intron (NM_080676, intron 3 of 16) 48554 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 16430 chr2 146634297 146634387 + 0 NA Intergenic Intergenic 47285 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 22427 chr5 40437557 40437708 + 0 NA Intergenic Intergenic -242298 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 7871 chr12 126667478 126667582 + 0 NA intron (NR_110034, intron 1 of 2) intron (NR_110034, intron 1 of 2) 22788 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 15144 chr2 20231779 20231907 + 0 NA Intergenic Intergenic -6410 NM_001006946 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 20035 chr3 122890307 122890409 + 0 NA non-coding (NR_024618, exon 1 of 1) non-coding (NR_024618, exon 1 of 1) 3845 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 206 chr1 15400801 15400873 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -9058 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 19146 chr3 9933659 9933763 + 0 NA promoter-TSS (NM_015513) promoter-TSS (NM_015513) -129 NM_015513 78987 Hs.9383 NM_015513 ENSG00000163703 CRELD1 AVSD2|CIRRIN cysteine rich with EGF like domains 1 protein-coding 24059 chr6 13328129 13328280 + 0 NA intron (NM_001318805, intron 1 of 7) intron (NM_001318805, intron 1 of 7) 379 NM_001143966 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 358 chr1 23691656 23691823 + 0 NA promoter-TSS (NM_001199802) promoter-TSS (NM_001199802) -40 NM_000975 6135 Hs.719951 NM_000975 ENSG00000142676 RPL11 DBA7|GIG34|L11 ribosomal protein L11 protein-coding 5516 chr11 66388993 66389033 + 0 NA Intergenic LTR41|LTR|ERVL -16537 NM_001300868 3177 Hs.569017 NM_001532 ENSG00000174669 SLC29A2 DER12|ENT2|HNP36 solute carrier family 29 member 2 protein-coding 29138 chr9 69325110 69325249 + 0 NA promoter-TSS (NM_001347995) promoter-TSS (NM_001347995) -131 NM_001347995 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 18678 chr22 22298080 22298214 + 0 NA promoter-TSS (NR_027293) promoter-TSS (NR_027293) 49 NR_027293 96610 Hs.449601 NM_080926 ENSG00000236850 BMS1P20 IGL|IGLV|IGLV1 BMS1, ribosome biogenesis factor pseudogene 20 pseudo 6596 chr12 10613535 10613707 + 0 NA promoter-TSS (NM_001300739) promoter-TSS (NM_001300739) -12 NM_018048 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex core component protein-coding 6984 chr12 50075296 50075449 + 0 NA intron (NM_001256830, intron 1 of 9) intron (NM_001256830, intron 1 of 9) 1787 NM_001256830 41 Hs.274361 NM_001095 ENSG00000110881 ASIC1 ACCN2|ASIC|BNaC2 acid sensing ion channel subunit 1 protein-coding 6965 chr12 49110866 49110980 + 0 NA promoter-TSS (NM_001300750) promoter-TSS (NM_001300750) -23 NM_001300751 55716 Hs.272838 NM_018113 ENSG00000139636 LMBR1L LIMR limb development membrane protein 1 like protein-coding 22256 chr5 14676513 14676617 + 0 NA intron (NM_138348, intron 2 of 6) intron (NM_138348, intron 2 of 6) 11920 NM_138348 90268 Hs.406335 NM_138348 ENSG00000154124 OTULIN AIPDS|FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 21669 chr4 106062586 106062690 + 0 NA intron (NM_001163436, intron 25 of 25) intron (NM_001163436, intron 25 of 25) -40160 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 2228 chr1 184754924 184755042 + 0 NA promoter-TSS (NM_001319960) promoter-TSS (NM_001319960) -76 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 5645 chr11 73289084 73289232 + 0 NA intron (NM_001277208, intron 1 of 1) intron (NM_001277208, intron 1 of 1) 17016 NM_001277208 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 12095 chr17 9880731 9880799 + 0 NA intron (NM_004246, intron 11 of 12) intron (NM_004246, intron 11 of 12) 24602 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 17135 chr2 220219551 220219698 + 0 NA Intergenic Intergenic -313059 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 2070 chr1 171781283 171781466 + 0 NA promoter-TSS (NM_014955) promoter-TSS (NM_014955) -247 NM_015935 51603 Hs.494705 NM_014955 ENSG00000010165 METTL13 5630401D24Rik|CGI-01|KIAA0859|feat methyltransferase like 13 protein-coding 13743 chr18 67783717 67783839 + 0 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -267048 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4 dermatan sulfate epimerase-like protein-coding 11515 chr16 67961797 67961953 + 0 NA intron (NM_001145962, intron 1 of 22) intron (NM_001145962, intron 1 of 22) 2190 NM_001145963 6560 Hs.10094 NM_005072 ENSG00000124067 SLC12A4 CTC-479C5.17|KCC1|hKCC1 solute carrier family 12 member 4 protein-coding 24454 chr6 35728107 35728312 + 0 NA non-coding (NR_027117, exon 9 of 10) non-coding (NR_027117, exon 9 of 10) 374 NM_001145775 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FK506 binding protein 5 protein-coding 22187 chr5 7816444 7816548 + 0 NA intron (NM_020546, intron 22 of 24) LTR33|LTR|ERVL 34994 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 20572 chr3 161890263 161890416 + 0 NA Intergenic LTR28B|LTR|ERV1 393531 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15 otolin 1 protein-coding 7413 chr12 91413632 91413792 + 0 NA Intergenic MER58A|DNA|hAT-Charlie -230588 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 10841 chr16 425562 425710 + 0 NA promoter-TSS (NM_014700) promoter-TSS (NM_014700) -32 NM_014700 9727 Hs.531642 NM_014700 ENSG00000090565 RAB11FIP3 CART1|Rab11-FIP3 RAB11 family interacting protein 3 protein-coding 28553 chr8 122601807 122601911 + 0 NA Intergenic L1ME4c|LINE|L1 -33215 NR_131202 105375734 Hs.628341 NR_131202 LOC105375734 - uncharacterized LOC105375734 ncRNA 4336 chr10 110225783 110225939 + 0 NA promoter-TSS (NM_005962) promoter-TSS (NM_005962) -143 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 27179 chr7 145644114 145644213 + 0 NA Intergenic L1M2|LINE|L1 -472198 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein-like 2 protein-coding 25527 chr7 876737 876841 + 0 NA exon (NM_015949, exon 1 of 9) exon (NM_015949, exon 1 of 9) 235 NM_015949 51608 Hs.107387 NM_015949 ENSG00000239857 GET4 C7orf20|CEE|CGI-20|TRC35 golgi to ER traffic protein 4 protein-coding 7707 chr12 117155386 117155490 + 0 NA intron (NM_015002, intron 11 of 11) intron (NM_015002, intron 11 of 11) 35057 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 30794 chrX 68844124 68844228 + 0 NA Intergenic Intergenic 15179 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 14779 chr19 54159814 54159973 + 0 NA promoter-TSS (NM_024316).7 promoter-TSS (NM_024316).7 -150 NM_024316 79165 Hs.590974 NM_024316 ENSG00000105617 LENG1 - leukocyte receptor cluster member 1 protein-coding 19343 chr3 36970037 36970117 + 0 NA Intergenic Intergenic 23227 NM_014805 9852 Hs.28020 NM_014805 ENSG00000178567 EPM2AIP1 - EPM2A interacting protein 1 protein-coding 4473 chr10 119271532 119271636 + 0 NA intron (NM_005308, intron 1 of 15) intron (NM_005308, intron 1 of 15) 63899 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 GPRK5 G protein-coupled receptor kinase 5 protein-coding 25531 chr7 993252 993430 + 0 NA Intergenic Intergenic 10142 NM_017781 54905 Hs.272795 NM_017781 ENSG00000073067 CYP2W1 - cytochrome P450 family 2 subfamily W member 1 protein-coding 2365 chr1 201289694 201289798 + 0 NA intron (NM_001005337, intron 1 of 13) intron (NM_001005337, intron 1 of 13) 6294 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 7100 chr12 55619814 55619968 + 0 NA Intergenic Intergenic -17001 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 22331 chr5 31532132 31532267 + 0 NA promoter-TSS (NM_013235) promoter-TSS (NM_013235) -24 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 18264 chr20 53949429 53949573 + 0 NA intron (NM_001316361, intron 9 of 9) intron (NM_001316361, intron 9 of 9) -73792 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1263 chr1 88684214 88684323 + 0 NA 5' UTR (NM_001320708, exon 1 of 21) 5' UTR (NM_001320708, exon 1 of 21) 124 NM_006256 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 21388 chr4 55852067 55852145 + 0 NA Intergenic LTR16E2|LTR|ERVL -1544 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 14603 chr19 46829316 46829470 + 0 NA Intergenic L1MB7|LINE|L1 1311 NR_024258 100170220 Hs.541243 NR_024258 SNAR-E - small ILF3/NF90-associated RNA E snRNA 22788 chr5 80488072 80488223 + 0 NA exon (NM_205548, exon 1 of 6) exon (NM_205548, exon 1 of 6) 166 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 3811 chr10 68901136 68901292 + 0 NA promoter-TSS (NM_024045) promoter-TSS (NM_024045) -64 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 24199 chr6 24743738 24743842 + 0 NA Intergenic Intergenic -24615 NM_030939 81688 Hs.744857 NM_030939 ENSG00000112308 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 7107 chr12 55926981 55927085 + 0 NA promoter-TSS (NM_001143853) promoter-TSS (NM_001143853) 92 NM_001143853 84305 Hs.505687 NM_032345 ENSG00000170473 PYM1 PYM|WIBG PYM homolog 1, exon junction complex associated factor protein-coding 18687 chr22 23521912 23522058 + 0 NA Intergenic CpG -16117 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 (non-protein coding) ncRNA 17979 chr20 38186820 38186924 + 0 NA Intergenic Intergenic -20294 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 572 chr1 33007383 33007548 + 0 NA TTS (NM_001319142) TTS (NM_001319142) 29446 NM_001319139 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 28555 chr8 122780220 122780252 + 0 NA Intergenic CpG -1426 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 3762 chr10 62426268 62426372 + 0 NA intron (NM_199451, intron 3 of 7) L2|LINE|L2 -51193 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 15628 chr2 61538714 61538757 + 0 NA promoter-TSS (NM_003400) promoter-TSS (NM_003400) -452 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM1|emb|exp1 exportin 1 protein-coding 8108 chr13 34863810 34863914 + 0 NA Intergenic Intergenic -78425 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 19821 chr3 107429971 107430075 + 0 NA promoter-TSS (NR_110039) promoter-TSS (NR_110039) -907 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 5415 chr11 63938574 63938662 + 0 NA promoter-TSS (NM_024771) promoter-TSS (NM_024771) -352 NM_024771 79829 Hs.523753 NM_024771 ENSG00000110583 NAA40 NAT11|PATT1 N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding 18686 chr22 23402790 23402894 + 0 NA promoter-TSS (NR_003950) promoter-TSS (NR_003950) -230 NR_003950 150244 Hs.386693 NM_152509 ZDHHC8P1 ZDHHC8P zinc finger DHHC-type containing 8 pseudogene 1 pseudo 23417 chr5 143596441 143596545 + 0 NA Intergenic Intergenic -83367 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 19527 chr3 51499360 51499471 + 0 NA intron (NM_014703, intron 1 of 25) CpG 587 NM_014703 9730 Hs.716623 NM_014703 ENSG00000145041 DCAF1 RIP|VPRBP DDB1 and CUL4 associated factor 1 protein-coding 4159 chr10 97498808 97498912 + 0 NA promoter-TSS (NM_001289403) promoter-TSS (NM_001289403) -22 NM_024954 80019 Hs.500724 NM_024954 ENSG00000165886 UBTD1 - ubiquitin domain containing 1 protein-coding 15208 chr2 26345860 26346023 + 0 NA promoter-TSS (NM_033505) promoter-TSS (NM_033505) -99 NM_001321975 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 28957 chr9 19102893 19103018 + 0 NA promoter-TSS (NM_001270890) promoter-TSS (NM_001270890) -13 NM_001270890 54801 Hs.533468 NM_017645 ENSG00000147874 HAUS6 Dgt6|FAM29A HAUS augmin like complex subunit 6 protein-coding 16851 chr2 191759023 191759160 + 0 NA Intergenic Intergenic 68910 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 7029 chr12 52244233 52244300 + 0 NA intron (NM_005556, intron 6 of 8) intron (NM_005556, intron 6 of 8) 11096 NM_005556 3855 Hs.411501 NM_005556 ENSG00000135480 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 27616 chr8 28490229 28490367 + 0 NA promoter-TSS (NM_001258211) promoter-TSS (NM_001258211) 20 NM_001258211 157574 Hs.741522 NM_172366 ENSG00000214050 FBXO16 FBX16 F-box protein 16 protein-coding 2549 chr1 209096281 209096385 + 0 NA Intergenic Intergenic -229123 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 5947 chr11 100753248 100753352 + 0 NA intron (NM_152432, intron 1 of 23) L1PBa|LINE|L1 -65345 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 10005 chr15 44288613 44288751 + 0 NA promoter-TSS (NM_138423) promoter-TSS (NM_138423) -29 NM_177974 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility candidate 4 protein-coding 27622 chr8 28625137 28625241 + 0 NA Intergenic Intergenic 76275 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 31159 chrX 152245398 152245502 + 0 NA intron (NM_000808, intron 5 of 9) intron (NM_000808, intron 5 of 9) -106872 NM_001204811 100533997 Hs.18048 NM_001204811 MAGEA10-MAGEA5 CT1.5 MAGEA10-MAGEA5 readthrough protein-coding 29351 chr9 80377299 80377403 + 0 NA Intergenic LTR32|LTR|ERVL 402328 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 6564 chr12 8082267 8082324 + 0 NA promoter-TSS (NR_024260) promoter-TSS (NR_024260) 84 NM_015509 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 11723 chr16 81526934 81527068 + 0 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -6901 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 7275 chr12 75781657 75781761 + 0 NA Intergenic LTR85a|LTR|Gypsy? 250067 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 26982 chr7 129055047 129055173 + 0 NA promoter-TSS (NM_001191028) promoter-TSS (NM_001191028) 63 NM_012470 23534 Hs.193613 NM_012470 ENSG00000064419 TNPO3 IPO12|LGMD1F|MTR10A|TRN-SR|TRN-SR2|TRNSR transportin 3 protein-coding 24047 chr6 12011373 12011477 + 0 NA Intergenic CpG -1066 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 21104 chr4 1082436 1082561 + 0 NA intron (NM_194439, intron 5 of 9) intron (NM_194439, intron 5 of 9) 31066 NM_001131034 285498 Hs.248290 NM_194439 ENSG00000178222 RNF212 ZHP3 ring finger protein 212 protein-coding 20322 chr3 143000647 143000676 + 0 NA promoter-TSS (NM_001080415) promoter-TSS (NM_001080415) 806 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 23423 chr5 145483339 145483443 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 351978 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 22045 chr4 176769643 176769747 + 0 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 23050 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|VRP vascular endothelial growth factor C protein-coding 27969 chr8 66522563 66522667 + 0 NA Intergenic Intergenic 29359 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 C8orf46 - chromosome 8 open reading frame 46 protein-coding 16448 chr2 149330414 149330497 + 0 NA promoter-TSS (NM_194317) promoter-TSS (NM_194317) -60 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 11290 chr16 47461262 47461307 + 0 NA promoter-TSS (NM_000293) promoter-TSS (NM_000293) -10 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 8401 chr13 78137832 78137936 + 0 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 83029 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 RNF219-AS1 POU4F1-AS1 RNF219 antisense RNA 1 ncRNA 28820 chr8 143829372 143829572 + 0 NA promoter-TSS (NM_001136033) promoter-TSS (NM_001136033) -86 NM_001271096 22827 Hs.521924 NM_014281 ENSG00000179950 PUF60 FIR|RoBPI|SIAHBP1|VRJS poly(U) binding splicing factor 60 protein-coding 2622 chr1 212035104 212035222 + 0 NA promoter-TSS (NM_001286230) promoter-TSS (NM_001286230) -390 NM_016448 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 8092 chr13 33494967 33495021 + 0 NA intron (NM_001243476, intron 4 of 17) intron (NM_001243476, intron 4 of 17) 181841 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 16670 chr2 172985690 172985844 + 0 NA intron (NM_001100397, intron 9 of 27) intron (NM_001100397, intron 9 of 27) 57562 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 8101 chr13 34066043 34066188 + 0 NA Intergenic L2a|LINE|L2 248046 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 16511 chr2 157876431 157876446 + 0 NA promoter-TSS (NM_001111067) promoter-TSS (NM_001111067) -576 NM_001347664 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 15733 chr2 69082676 69082885 + 0 NA intron (NM_032208, intron 8 of 17) intron (NM_032208, intron 8 of 17) -20902 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 24133 chr6 18122630 18122863 + 0 NA promoter-TSS (NM_198586) promoter-TSS (NM_198586) -126 NM_198586 378884 Hs.348351 NM_198586 ENSG00000187566 NHLRC1 EPM2A|EPM2B|MALIN|bA204B7.2 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding 4466 chr10 119091065 119091196 + 0 NA Intergenic Intergenic -10308 NM_003750 8661 Hs.523299 NM_003750 ENSG00000107581 EIF3A EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185 eukaryotic translation initiation factor 3 subunit A protein-coding 29964 chr9 115672676 115672780 + 0 NA Intergenic MIRc|SINE|MIR 71511 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 24050 chr6 12290145 12290268 + 0 NA promoter-TSS (NM_001168319) promoter-TSS (NM_001168319) -90 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 24283 chr6 28747816 28747851 + 0 NA Intergenic Intergenic -93358 NR_135285 387055 Hs.369401 NR_135285 ENSG00000235570 LINC00533 C6orf38|C6orf39 long intergenic non-protein coding RNA 533 ncRNA 13344 chr18 24426577 24426787 + 0 NA promoter-TSS (NM_018439) promoter-TSS (NM_018439) 37 NM_018439 55364 Hs.515317 NM_018439 ENSG00000154059 IMPACT RWDD5 impact RWD domain protein protein-coding 6735 chr12 22625008 22625200 + 0 NA promoter-TSS (NR_135030) promoter-TSS (NR_135030) -38 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 10953 chr16 4495239 4495343 + 0 NA promoter-TSS (NM_001286270) promoter-TSS (NM_001286270) -528 NM_001286270 3163 Hs.284279 NM_002134 ENSG00000103415 HMOX2 HO-2 heme oxygenase 2 protein-coding 30705 chrX 49101208 49101330 + 0 NA promoter-TSS (NM_007075) promoter-TSS (NM_007075) -148 NM_007075 11152 Hs.632807 NM_007075 ENSG00000196998 WDR45 JM5|NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4 WD repeat domain 45 protein-coding 21437 chr4 72971645 72971749 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 98062 NM_173827 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS COX18, cytochrome c oxidase assembly factor protein-coding 29876 chr9 111851742 111851846 + 0 NA Intergenic Intergenic -44972 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 627 chr1 36224279 36224424 + 0 NA promoter-TSS (NM_005119) promoter-TSS (NM_005119) -61 NM_001321471 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 4496 chr10 120508561 120508665 + 0 NA intron (NM_001318169, intron 2 of 2) intron (NM_001318169, intron 2 of 2) 51659 NM_001318169 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 1308 chr1 92485907 92486011 + 0 NA intron (NM_005263, intron 1 of 6) CpG-1333 112 NM_001127216 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 27799 chr8 49172024 49172173 + 0 NA Intergenic L1M4|LINE|L1 99757 NM_001256597 492307 Hs.49890 NM_001007176 ENSG00000168333 C8orf22 - chromosome 8 open reading frame 22 protein-coding 30464 chrX 7445116 7445220 + 0 NA Intergenic LTR52|LTR|ERVL 192695 NM_001320754 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase (microsomal), isozyme S protein-coding 28911 chr9 6015656 6015760 + 0 NA promoter-TSS (NM_001243202) promoter-TSS (NM_001243202) -68 NM_012416 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 6204 chr11 120128895 120129027 + 0 NA promoter-TSS (NM_001330382) promoter-TSS (NM_001330382) -48 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 28676 chr8 130062142 130062246 + 0 NA intron (NM_001247996, intron 28 of 30) L2a|LINE|L2 22574 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 27705 chr8 38269243 38269347 + 0 NA promoter-TSS (NM_001102559) promoter-TSS (NM_001102559) -75 NM_001102560 84513 Hs.567619 NM_032483 ENSG00000147535 PLPP5 DPPL1|HTPAP|PPAPDC1B phospholipid phosphatase 5 protein-coding 12914 chr17 69762163 69762267 + 0 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 168228 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 13953 chr19 4495700 4495755 + 0 NA intron (NM_032631, intron 9 of 15) L2a|LINE|L2 21977 NM_001080400 729359 Hs.591387 NM_001080400 ENSG00000167676 PLIN4 KIAA1881|S3-12 perilipin 4 protein-coding 5792 chr11 86193619 86193776 + 0 NA Intergenic Intergenic -50687 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 12483 chr17 41521958 41522062 + 0 NA Intergenic Intergenic -2992 NM_002275 3866 Hs.654570 NM_002275 ENSG00000171346 KRT15 CK15|K15|K1CO keratin 15 protein-coding 13796 chr18 76564225 76564329 + 0 NA Intergenic MIRc|SINE|MIR 35622 NR_015417 284276 Hs.390287 NR_015417 ENSG00000263812 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 4826 chr11 10933904 10934033 + 0 NA Intergenic Intergenic 75751 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 9970 chr15 42208319 42208449 + 0 NA promoter-TSS (NM_001301138) promoter-TSS (NM_001301138) -58 NM_015289 23339 Hs.88025 NM_015289 ENSG00000166887 VPS39 TLP|VAM6|hVam6p VPS39, HOPS complex subunit protein-coding 13294 chr18 21600732 21600908 + 0 NA promoter-TSS (NM_052911) promoter-TSS (NM_052911) -88 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 3083 chr1 241807133 241807202 + 0 NA Intergenic L1ME3B|LINE|L1 -41024 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 12743 chr17 56978052 56978156 + 0 NA promoter-TSS (NM_021626) promoter-TSS (NM_021626) -3 NM_021626 59342 Hs.514950 NM_021626 ENSG00000121064 SCPEP1 HSCP1|RISC serine carboxypeptidase 1 protein-coding 13723 chr18 63882942 63883083 + 0 NA Intergenic Intergenic -4693 NM_002575 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 19137 chr3 9731253 9731357 + 0 NA promoter-TSS (NM_001319050) promoter-TSS (NM_001319050) -424 NM_001319049 7862 Hs.1004 NM_004634 ENSG00000156983 BRPF1 BR140 bromodomain and PHD finger containing 1 protein-coding 1842 chr1 156126360 156126499 + 0 NA intron (NM_001257374, intron 1 of 12) intron (NM_001257374, intron 1 of 12) 312 NM_001257374 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 19443 chr3 45183283 45183387 + 0 NA Intergenic Intergenic -36913 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 24484 chr6 37102579 37102687 + 0 NA Intergenic Intergenic -67513 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 30936 chrX 107655416 107655570 + 0 NA Intergenic Intergenic 27069 NM_002764 5631 Hs.56 NM_002764 ENSG00000147224 PRPS1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI phosphoribosyl pyrophosphate synthetase 1 protein-coding 29731 chr9 104961322 104961475 + 0 NA Intergenic Intergenic -33152 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 11067 chr16 17304704 17304808 + 0 NA intron (NM_022166, intron 2 of 11) intron (NM_022166, intron 2 of 11) 166125 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 20693 chr3 176174202 176174306 + 0 NA Intergenic MamRep38|DNA|hAT -340849 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 3881 chr10 73096107 73096258 + 0 NA intron (NM_001142595, intron 1 of 15) CpG 792 NM_001142595 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 23038 chr5 113426206 113426272 + 0 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 8792 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 12012 chr17 6651551 6651715 + 0 NA promoter-TSS (NM_016060) promoter-TSS (NM_016060) 1 NM_016060 51003 Hs.567493 NM_016060 ENSG00000108590 MED31 3110004H13Rik|CGI-125|Soh1 mediator complex subunit 31 protein-coding 24126 chr6 17865408 17865558 + 0 NA intron (NM_001105568, intron 4 of 37) intron (NM_001105568, intron 4 of 37) 122140 NM_001105568 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 26415 chr7 74174090 74174238 + 0 NA promoter-TSS (NM_022170) promoter-TSS (NM_022170) -212 NM_031992 7458 Hs.520943 NM_022170 ENSG00000106682 EIF4H WBSCR1|WSCR1|eIF-4H eukaryotic translation initiation factor 4H protein-coding 28408 chr8 107509055 107509159 + 0 NA Intergenic L1MB5|LINE|L1 -11052 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 27451 chr8 18084036 18084177 + 0 NA promoter-TSS (NR_125430) promoter-TSS (NR_125430) 264 NM_177924 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 17885 chr20 33778634 33778751 + 0 NA intron (NR_104259, intron 10 of 13) intron (NR_104259, intron 10 of 13) 32407 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 9362 chr14 73886692 73886796 + 0 NA non-coding (NR_040251, exon 1 of 12) non-coding (NR_040251, exon 1 of 12) 129 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 10584 chr15 83288655 83288685 + 0 NA Intergenic Intergenic -3954 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 26572 chr7 90607352 90607456 + 0 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) 11042 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 10984 chr16 8963899 8964028 + 0 NA promoter-TSS (NM_003470) promoter-TSS (NM_003470) -479 NM_003470 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 22699 chr5 72067799 72067903 + 0 NA Intergenic Intergenic -39417 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 23011 chr5 111266637 111266695 + 0 NA intron (NM_001323374, intron 2 of 11) intron (NM_001323374, intron 2 of 11) 42124 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|caMK calcium/calmodulin dependent protein kinase IV protein-coding 5147 chr11 34850508 34850651 + 0 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -65551 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 22224 chr5 10720199 10720303 + 0 NA intron (NM_004394, intron 2 of 3) HERVL-int|LTR|ERVL 41024 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 14654 chr19 48624147 48624251 + 0 NA promoter-TSS (NM_001204160) promoter-TSS (NM_001204160) -753 NM_001204160 56848 Hs.528006 NM_020126 ENSG00000063176 SPHK2 SK 2|SK-2|SPK 2|SPK-2 sphingosine kinase 2 protein-coding 752 chr1 43206891 43207100 + 0 NA intron (NM_001195831, intron 10 of 23) intron (NM_001195831, intron 10 of 23) -34425 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 12520 chr17 42519055 42519142 + 0 NA intron (NM_001130021, intron 21 of 21) intron (NM_001130021, intron 21 of 21) 4910 NR_049808 100847046 NR_049808 ENSG00000033627 MIR5010 mir-5010 microRNA 5010 ncRNA 16346 chr2 133505346 133505431 + 0 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 63072 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 16731 chr2 178112314 178112472 + 0 NA promoter-TSS (NM_152945) promoter-TSS (NM_152945) -31 NM_152945 129831 Hs.377257 NM_152945 ENSG00000155636 RBM45 DRB1|RB-1 RNA binding motif protein 45 protein-coding 14411 chr19 38305010 38305189 + 0 NA TTS (NM_001317801) TTS (NM_001317801) 938 NM_033520 64073 Hs.631544 NM_022125 ENSG00000167644 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 379 chr1 24415592 24415733 + 0 NA promoter-TSS (NM_001199012) promoter-TSS (NM_001199012) -88 NM_001322864 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 24950 chr6 100300569 100300673 + 0 NA Intergenic MER21C|LTR|ERVL 163054 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 9572 chr14 92726252 92726392 + 0 NA intron (NM_001008530, intron 3 of 14) intron (NM_001008530, intron 3 of 14) 22380 NM_001008530 5641 Hs.18069 NM_005606 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 28205 chr8 93961050 93961158 + 0 NA Intergenic Intergenic 44053 NM_001161781 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 24933 chr6 96924592 96924696 + 0 NA promoter-TSS (NM_001286252) promoter-TSS (NM_001286252) 24 NM_001323256 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 19006 chr22 45549249 45549400 + 0 NA intron (NM_006486, intron 13 of 16) intron (NM_006486, intron 13 of 16) 46485 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 14867 chr19 58327247 58327351 + 0 NA promoter-TSS (NR_144444) promoter-TSS (NR_144444) -51 NR_144444 105372480 Hs.659382 NR_144444 LOC105372480 - uncharacterized LOC105372480 ncRNA 18367 chr20 60512665 60512769 + 0 NA Intergenic Intergenic 34606 NR_039758 100616362 NR_039758 ENSG00000266140 MIR4533 - microRNA 4533 ncRNA 14635 chr19 48053974 48054059 + 0 NA intron (NM_003706, intron 15 of 16) intron (NM_003706, intron 15 of 16) -7355 NR_132363 106144526 Hs.622570 NR_132363 ENSG00000269420 PLA2G4C-AS1 - PLA2G4C antisense RNA 1 ncRNA 11896 chr17 1590105 1590285 + 0 NA intron (NM_001321365, intron 9 of 14).2 intron (NM_001321365, intron 9 of 14).2 14839 NM_001284499 124935 Hs.160550 NM_152346 ENSG00000167703 SLC43A2 LAT4 solute carrier family 43 member 2 protein-coding 19950 chr3 116929767 116929780 + 0 NA intron (NR_121607, intron 1 of 1) A-rich|Low_complexity|Low_complexity 8342 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 30244 chr9 129777223 129777371 + 0 NA Intergenic Intergenic -24232 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 10360 chr15 69468570 69468722 + 0 NA Intergenic Intergenic 15826 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 1894 chr1 159780830 159780859 + 0 NA promoter-TSS (NM_001319658) promoter-TSS (NM_001319658) -102 NM_017823 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 11923 chr17 2563235 2563357 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -30333 NM_000430 5048 Hs.77318 NM_000430 ENSG00000007168 PAFAH1B1 LIS1|LIS2|MDCR|MDS|NudF|PAFAH platelet activating factor acetylhydrolase 1b regulatory subunit 1 protein-coding 17240 chr2 229714536 229714542 + 0 NA promoter-TSS (NM_139072) promoter-TSS (NM_139072) 31 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 14277 chr19 18636699 18636802 + 0 NA promoter-TSS (NM_001345985) promoter-TSS (NM_001345985) -215 NM_001345985 55295 Hs.250632 NM_018316 ENSG00000167487 KLHL26 - kelch like family member 26 protein-coding 2260 chr1 190169538 190169611 + 0 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 306436 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 15599 chr2 58570002 58570106 + 0 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 49301 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 1215 chr1 85465144 85465248 + 0 NA promoter-TSS (NM_012137) promoter-TSS (NM_012137) 10 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 12377 chr17 35587294 35587398 + 0 NA promoter-TSS (NM_001030006) promoter-TSS (NM_001030006) 83 NM_001030006 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 beta 1 subunit protein-coding 27968 chr8 66428825 66428930 + 0 NA promoter-TSS (NR_040434) promoter-TSS (NR_040434) 100 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 30881 chrX 101051944 101051977 + 0 NA 5' UTR (NM_001167970, exon 1 of 14) 5' UTR (NM_001167970, exon 1 of 14) 156 NM_001167971 79979 Hs.496501 NM_024917 ENSG00000188917 TRMT2B CXorf34|dJ341D10.3 tRNA methyltransferase 2 homolog B protein-coding 18922 chr22 39502233 39502373 + 0 NA promoter-TSS (NM_019008) promoter-TSS (NM_019008) 73 NR_130790 54471 Hs.728085 NM_013298 ENSG00000100335 MIEF1 HSU79252|MID51|SMCR7L|dJ1104E15.3 mitochondrial elongation factor 1 protein-coding 6176 chr11 118956688 118956826 + 0 NA intron (NM_006760, intron 1 of 4) intron (NM_006760, intron 1 of 4) 459 NM_006760 7379 Hs.379613 NM_006760 ENSG00000110375 UPK2 UP2|UPII uroplakin 2 protein-coding 30988 chrX 115561166 115561326 + 0 NA 5' UTR (NM_001282337, exon 1 of 18) 5' UTR (NM_001282337, exon 1 of 18) 396 NM_005032 5358 Hs.496622 NM_005032 ENSG00000102024 PLS3 BMND18|T-plastin plastin 3 protein-coding 765 chr1 43649898 43650013 + 0 NA promoter-TSS (NM_014663) promoter-TSS (NM_014663) -171 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 5033 chr11 26584992 26585096 + 0 NA intron (NM_001313726, intron 15 of 27) L2|LINE|L2 -12776 NM_001135091 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 5937 chr11 97683839 97683943 + 0 NA Intergenic L1MA2|LINE|L1 1175466 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LOC105369443 - uncharacterized LOC105369443 ncRNA 2521 chr1 207240782 207240931 + 0 NA Intergenic Intergenic -80616 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 29903 chr9 113150895 113151036 + 0 NA promoter-TSS (NM_001860) promoter-TSS (NM_001860) 7 NM_001860 1318 Hs.24030 NM_001860 ENSG00000136867 SLC31A2 COPT2|CTR2|hCTR2 solute carrier family 31 member 2 protein-coding 19747 chr3 99246408 99246512 + 0 NA Intergenic LTR50|LTR|ERVL -344771 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 29100 chr9 38008419 38008523 + 0 NA intron (NM_003028, intron 2 of 5) intron (NM_003028, intron 2 of 5) 60742 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 28772 chr8 141026874 141027058 + 0 NA Intergenic Intergenic -25653 NM_001316342 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 19804 chr3 105598221 105598325 + 0 NA Intergenic LTR8B|LTR|ERV1 231560 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 1002 chr1 63327650 63327754 + 0 NA promoter-TSS (NR_106716) promoter-TSS (NR_106716) -718 NR_106716 102464823 NR_106716 ENSG00000275836 MIR6068 hsa-mir-6068 microRNA 6068 ncRNA 27899 chr8 58858524 58858628 + 0 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -198731 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 4837 chr11 12066311 12066336 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 35448 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LOC105376554 - uncharacterized LOC105376554 ncRNA 6187 chr11 119095465 119095596 + 0 NA promoter-TSS (NM_002105) promoter-TSS (NM_002105) -63 NM_002105 3014 Hs.477879 NM_002105 ENSG00000188486 H2AFX H2A.X|H2A/X|H2AX H2A histone family member X protein-coding 25034 chr6 113643116 113643250 + 0 NA intron (NR_125844, intron 1 of 2) intron (NR_125844, intron 1 of 2) 6892 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 6391 chr11 132863028 132863151 + 0 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 80548 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 10873 chr16 1964866 1965015 + 0 NA promoter-TSS (NR_003142) promoter-TSS (NR_003142) -56 NR_003142 735301 Hs.115329 NR_003142 ENSG00000255198 SNHG9 NCRNA00062 small nucleolar RNA host gene 9 ncRNA 11775 chr16 84699766 84699870 + 0 NA promoter-TSS (NM_005153) promoter-TSS (NM_005153) -131 NR_073577 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 18020 chr20 41008438 41008523 + 0 NA intron (NM_001318196, intron 2 of 2) L2b|LINE|L2 -20338 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 29562 chr9 92808830 92808984 + 0 NA promoter-TSS (NR_136301) promoter-TSS (NR_136301) -704 NR_026868 138649 Hs.643597 NM_001010925 ENSG00000187984 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 26992 chr7 129780326 129780331 + 0 NA Intergenic CpG -5314 NR_029615 406959 NR_029615 ENSG00000207691 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 23827 chr5 179806894 179806932 + 0 NA promoter-TSS (NM_014275) promoter-TSS (NM_014275) 39 NM_014275 11282 Hs.567419 NM_014275 ENSG00000161013 MGAT4B GNT-IV|GNT-IVB mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B protein-coding 20971 chr3 192207522 192207626 + 0 NA intron (NM_021032, intron 3 of 4) L2c|LINE|L2 -31056 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 20447 chr3 153614673 153614777 + 0 NA Intergenic Intergenic 130230 NM_001101337 152118 Hs.58586 NM_001101337 C3orf79 - chromosome 3 open reading frame 79 protein-coding 4925 chr11 16788231 16788350 + 0 NA 3' UTR (NM_175058, exon 23 of 23) 3' UTR (NM_175058, exon 23 of 23) 49689 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 6120 chr11 115736264 115736265 + 0 NA Intergenic Intergenic -1502 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 17646 chr20 13784854 13784999 + 0 NA promoter-TSS (NR_029377) promoter-TSS (NR_029377) 7 NM_001276380 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 9883 chr15 37101409 37101557 + 0 NA promoter-TSS (NM_001220482) promoter-TSS (NM_001220482) -184 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 16325 chr2 130864929 130865051 + 0 NA Intergenic Intergenic -51661 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 10474 chr15 75738625 75738814 + 0 NA intron (NR_024595, intron 2 of 4) CpG-8450 1358 NR_024595 100128285 Hs.604066 NR_024595 DNM1P35 DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88 dynamin 1 pseudogene 35 pseudo 2079 chr1 173714922 173714990 + 0 NA promoter-TSS (NM_014458) promoter-TSS (NM_014458) 15 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 30644 chrX 44306409 44306523 + 0 NA intron (NM_025184, intron 2 of 14) MLT1L|LTR|ERVL-MaLR 37211 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 27987 chr8 69147945 69148049 + 0 NA Intergenic Intergenic -43807 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 14792 chr19 55069671 55069794 + 0 NA promoter-TSS (NM_138412) promoter-TSS (NM_138412) -186 NM_138412 112724 Hs.327631 NM_138412 ENSG00000160439 RDH13 SDR7C3 retinol dehydrogenase 13 protein-coding 29747 chr9 105694906 105695059 + 0 NA intron (NM_018112, intron 1 of 5) CpG 457 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 800 chr1 45491268 45491399 + 0 NA promoter-TSS (NM_007170) promoter-TSS (NM_007170) -165 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis-specific kinase 2 protein-coding 5511 chr11 66289172 66289344 + 0 NA promoter-TSS (NM_001300861) promoter-TSS (NM_001300861) -91 NM_001300861 10897 Hs.446445 NM_020470 ENSG00000174851 YIF1A 54TM|FinGER7|YIF1|YIF1P Yip1 interacting factor homolog A, membrane trafficking protein protein-coding 13267 chr18 11850155 11850259 + 0 NA intron (NM_001142339, intron 6 of 12) intron (NM_001142339, intron 6 of 12) -1183 NM_020412 57132 Hs.656244 NM_020412 ENSG00000255112 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 9338 chr14 72961695 72961835 + 0 NA Intergenic Intergenic 25191 NM_178441 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 18620 chr22 18031806 18031960 + 0 NA intron (NR_024417, intron 1 of 1) intron (NR_024417, intron 1 of 1) 2498 NR_024417 100192420 Hs.589947 NR_024417 ENSG00000235295 LINC01634 - long intergenic non-protein coding RNA 1634 ncRNA 23467 chr5 148826346 148826450 + 0 NA promoter-TSS (NM_000024) promoter-TSS (NM_000024) -195 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 13133 chr17 81637079 81637127 + 0 NA promoter-TSS (NM_001290212) promoter-TSS (NM_001290212) 50 NM_017921 55666 Hs.464333 NM_017921 ENSG00000182446 NPLOC4 NPL4 NPL4 homolog, ubiquitin recognition factor protein-coding 20632 chr3 170689347 170689450 + 0 NA intron (NR_135556, intron 2 of 5) AluJb|SINE|Alu -103324 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 3613 chr10 43287378 43287514 + 0 NA Intergenic Intergenic -20527 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 31126 chrX 147958483 147958587 + 0 NA Intergenic Intergenic -22794 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 fragile X mental retardation 1 neighbor protein-coding 10726 chr15 92809291 92809383 + 0 NA Intergenic CpG 13853 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 25843 chr7 22731460 22731564 + 0 NA exon (NM_000600, exon 5 of 5) exon (NM_000600, exon 5 of 5) -3892 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 12418 chr17 38559556 38559590 + 0 NA intron (NM_025248, intron 10 of 18) CpG 46357 NM_025248 80725 Hs.448872 NM_025248 ENSG00000277363 SRCIN1 P140|SNIP SRC kinase signaling inhibitor 1 protein-coding 15482 chr2 46165008 46165149 + 0 NA intron (NM_005400, intron 14 of 14) intron (NM_005400, intron 14 of 14) -132324 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 29449 chr9 86767027 86767131 + 0 NA Intergenic Intergenic 180110 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 7128 chr12 56224160 56224317 + 0 NA promoter-TSS (NM_024068) promoter-TSS (NM_024068) -103 NM_024068 79035 Hs.240170 NM_024068 ENSG00000139579 NABP2 OBFC2B|SOSS-B1|SSB1|hSSB1 nucleic acid binding protein 2 protein-coding 8727 chr14 23154413 23154517 + 0 NA promoter-TSS (NM_001267037) promoter-TSS (NM_001267037) -15 NM_001267037 23428 Hs.596643 NM_012244 ENSG00000092068 SLC7A8 LAT2|LPI-PC1 solute carrier family 7 member 8 protein-coding 13919 chr19 3094054 3094158 + 0 NA promoter-TSS (NM_002067) promoter-TSS (NM_002067) -304 NM_002067 2767 Hs.650575 NM_002067 ENSG00000088256 GNA11 FBH|FBH2|FHH2|GNA-11|HHC2|HYPOC2 G protein subunit alpha 11 protein-coding 19628 chr3 65483601 65483705 + 0 NA intron (NM_001033057, intron 3 of 22) intron (NM_001033057, intron 3 of 22) -410163 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 18274 chr20 54619321 54619475 + 0 NA intron (NM_177959, intron 6 of 7) intron (NM_177959, intron 6 of 7) 143680 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 24755 chr6 63573543 63573674 + 0 NA intron (NM_003463, intron 1 of 5) CpG 1596 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 14493 chr19 42255133 42255211 + 0 NA promoter-TSS (NM_006494) promoter-TSS (NM_006494) -8 NM_006494 2077 Hs.655969 NM_006494 ENSG00000105722 ERF CHYTS|CRS4|PE-2|PE2 ETS2 repressor factor protein-coding 20927 chr3 189937765 189937895 + 0 NA Intergenic Intergenic 107908 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 16749 chr2 180360034 180360138 + 0 NA Intergenic L1PBa|LINE|L1 -332018 NR_104322 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 13259 chr18 9913858 9913994 + 0 NA promoter-TSS (NM_003574) promoter-TSS (NM_003574) -32 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 22245 chr5 14143006 14143170 + 0 NA promoter-TSS (NM_007118) promoter-TSS (NM_007118) -614 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 5040 chr11 27174180 27174291 + 0 NA intron (NR_125766, intron 2 of 4) intron (NR_125766, intron 2 of 4) 44533 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 12163 chr17 17496323 17496477 + 0 NA promoter-TSS (NM_001199989) promoter-TSS (NM_001199989) -5 NM_001199989 51655 Hs.25829 NM_016084 ENSG00000108551 RASD1 AGS1|DEXRAS1|MGC:26290 ras related dexamethasone induced 1 protein-coding 6804 chr12 28130814 28130945 + 0 NA Intergenic OldhAT1|DNA|hAT-Ac -59548 NM_018318 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 22835 chr5 87120623 87120800 + 0 NA intron (NR_105018, intron 1 of 3) MIRb|SINE|MIR 563 NR_105018 101929380 NR_105018 LOC101929380 - uncharacterized LOC101929380 ncRNA 11882 chr17 952693 952835 + 0 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 26994 NM_022463 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 26377 chr7 70600046 70600115 + 0 NA intron (NM_015570, intron 5 of 18) MER5A|DNA|hAT-Charlie -532457 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13106 chr17 80605747 80605851 + 0 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 60974 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 21882 chr4 147582558 147582703 + 0 NA Intergenic Intergenic -34758 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 1062 chr1 67053137 67053242 + 0 NA intron (NM_015139, intron 1 of 11) intron (NM_015139, intron 1 of 11) 1208 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 UGTREL7 solute carrier family 35 member D1 protein-coding 7767 chr12 121124570 121124723 + 0 NA Intergenic Intergenic -8173 NR_033953 5027 Hs.729169 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 22445 chr5 41414741 41414894 + 0 NA intron (NM_001005473, intron 1 of 2) MER44B|DNA|TcMar-Tigger 95811 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 14716 chr19 50215343 50215448 + 0 NA intron (NM_024729, intron 2 of 40) intron (NM_024729, intron 2 of 40) 11767 NM_001145809 79784 Hs.467142 NM_024729 ENSG00000105357 MYH14 DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin myosin heavy chain 14 protein-coding 16160 chr2 112814404 112814546 + 0 NA Intergenic Intergenic 22304 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 3112 chr1 244341838 244341957 + 0 NA Intergenic Intergenic -10738 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 7836 chr12 123633701 123633808 + 0 NA promoter-TSS (NM_001414) promoter-TSS (NM_001414) 15 NM_001516 2967 Hs.355348 NM_001516 ENSG00000111358 GTF2H3 BTF2|P34|TFB4|TFIIH general transcription factor IIH subunit 3 protein-coding 22631 chr5 65481895 65481999 + 0 NA promoter-TSS (NM_197941) promoter-TSS (NM_197941) -27 NR_135689 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 19526 chr3 51391059 51391270 + 0 NA promoter-TSS (NM_013286) promoter-TSS (NM_013286) -104 NM_013286 29890 Hs.118738 NM_013286 ENSG00000259956 RBM15B HUMAGCGB|OTT3 RNA binding motif protein 15B protein-coding 12996 chr17 75131725 75131894 + 0 NA promoter-TSS (NM_001252377) promoter-TSS (NM_001252377) -14 NM_014595 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 27757 chr8 42896463 42896645 + 0 NA promoter-TSS (NM_032410) promoter-TSS (NM_032410) 169 NM_001160225 81790 Hs.491626 NM_030954 ENSG00000120925 RNF170 ADSA|SNAX1 ring finger protein 170 protein-coding 27239 chr7 151687723 151687836 + 0 NA intron (NM_016203, intron 3 of 15) intron (NM_016203, intron 3 of 15) 48535 NM_001304527 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 23124 chr5 124741138 124741247 + 0 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 3920 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 30449 chrX 3371289 3371422 + 0 NA Intergenic Intergenic -24712 NM_015419 25878 Hs.369422 NM_015419 ENSG00000101825 MXRA5 - matrix remodeling associated 5 protein-coding 22356 chr5 34608957 34609061 + 0 NA Intergenic Intergenic -47319 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 6476 chr12 4649046 4649150 + 0 NA promoter-TSS (NM_006422) promoter-TSS (NM_006422) 0 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 10403 chr15 71790199 71790353 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR -20272 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 18106 chr20 45910895 45910960 + 0 NA promoter-TSS (NM_001242921) promoter-TSS (NM_001242921) 67 NM_001242921 5360 Hs.439312 NM_006227 ENSG00000100979 PLTP BPIFE|HDLCQ9 phospholipid transfer protein protein-coding 445 chr1 27142603 27142743 + 0 NA intron (NM_003047, intron 1 of 11) intron (NM_003047, intron 1 of 11) 12457 NR_046474 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 12733 chr17 56780397 56780536 + 0 NA Intergenic CpG 53429 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 21932 chr4 154602807 154602911 + 0 NA Intergenic Intergenic 9891 NM_021870 2266 Hs.727584 NM_000509 ENSG00000171557 FGG - fibrinogen gamma chain protein-coding 9675 chr14 100439337 100439487 + 0 NA intron (NM_024515, intron 2 of 6) intron (NM_024515, intron 2 of 6) 62916 NM_024515 79446 Hs.497600 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 28851 chr8 144786775 144786929 + 0 NA intron (NM_030580, intron 1 of 5) CpG 493 NM_030580 80778 Hs.631854 NM_030580 ENSG00000196378 ZNF34 KOX32 zinc finger protein 34 protein-coding 9919 chr15 40155364 40155484 + 0 NA Intergenic Intergenic -5585 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 21338 chr4 48698620 48698659 + 0 NA intron (NM_015030, intron 2 of 63) intron (NM_015030, intron 2 of 63) 81660 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 22892 chr5 93597290 93597394 + 0 NA Intergenic Intergenic 14005 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding 19926 chr3 114498834 114498984 + 0 NA intron (NR_121661, intron 1 of 2) intron (NR_121661, intron 1 of 2) 45316 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 12360 chr17 35142268 35142405 + 0 NA promoter-TSS (NM_001014445) promoter-TSS (NM_001014445) -21 NM_018096 54475 Hs.85570 NM_018096 ENSG00000073536 NLE1 Nle notchless homolog 1 protein-coding 4002 chr10 84179336 84179459 + 0 NA intron (NM_207373, intron 2 of 2) intron (NM_207373, intron 2 of 2) 5599 NM_207373 387695 Hs.298713 NM_207373 ENSG00000188373 C10orf99 AP-57|CSBF|UNQ1833 chromosome 10 open reading frame 99 protein-coding 11172 chr16 27264259 27264363 + 0 NA intron (NM_145080, intron 1 of 7) AluJb|SINE|Alu -3894 NR_037184 400512 Hs.434412 NR_037184 ENSG00000245888 FLJ21408 - uncharacterized LOC400512 ncRNA 20164 chr3 132136156 132136310 + 0 NA Intergenic Intergenic -96627 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 26093 chr7 39589800 39590004 + 0 NA intron (NM_001282446, intron 2 of 2) intron (NM_001282446, intron 2 of 2) 23526 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1D1 C7orf36|GK003 Yae1 domain containing 1 protein-coding 24175 chr6 21022496 21022664 + 0 NA intron (NM_017774, intron 11 of 15) intron (NM_017774, intron 11 of 15) 488123 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 29592 chr9 94805738 94805892 + 0 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) -4147 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 6763 chr12 26274831 26274937 + 0 NA Intergenic Intergenic 79311 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 24875 chr6 85127017 85127121 + 0 NA Intergenic Intergenic 263117 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LOC101928820 - uncharacterized LOC101928820 ncRNA 31186 chrX 154478967 154479045 + 0 NA 5' UTR (NM_006014, exon 1 of 3) 5' UTR (NM_006014, exon 1 of 3) 251 NM_006014 8270 Hs.444619 NM_006014 ENSG00000196976 LAGE3 CVG5|DXS9879E|DXS9951E|ESO3|ITBA2|Pcc1 L antigen family member 3 protein-coding 4603 chr10 128047447 128047605 + 0 NA promoter-TSS (NM_130435) promoter-TSS (NM_130435) -23 NM_130435 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase, receptor type E protein-coding 15442 chr2 43226579 43226683 + 0 NA promoter-TSS (NM_006887) promoter-TSS (NM_006887) -25 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 1858 chr1 156725901 156725906 + 0 NA intron (NM_001303095, intron 2 of 3) intron (NM_001303095, intron 2 of 3) 2536 NM_001303095 81875 Hs.301904 NM_030980 ENSG00000143319 ISG20L2 HSD38 interferon stimulated exonuclease gene 20 like 2 protein-coding 718 chr1 41382265 41382369 + 0 NA exon (NM_001291281, exon 3 of 3) exon (NM_001291281, exon 3 of 3) -6648 NR_135817 101929901 NR_135817 ENSG00000229901 LOC101929901 - uncharacterized LOC101929901 ncRNA 6486 chr12 5503975 5503994 + 0 NA Intergenic Intergenic 9852 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 21536 chr4 84691530 84691634 + 0 NA intron (NM_014991, intron 60 of 67) intron (NM_014991, intron 60 of 67) 108678 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS CDP-diacylglycerol synthase 1 protein-coding 18505 chr21 35217714 35217818 + 0 NA Intergenic Intergenic -168468 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 6520 chr12 6471048 6471055 + 0 NA promoter-TSS (NM_014231) promoter-TSS (NM_014231) -152 NM_001297438 6843 Hs.20021 NM_014231 ENSG00000139190 VAMP1 SPAX1|SYB1|VAMP-1 vesicle associated membrane protein 1 protein-coding 7678 chr12 113184985 113185135 + 0 NA promoter-TSS (NM_001286215) promoter-TSS (NM_001286215) 419 NM_001111322 79039 Hs.506861 NM_024072 ENSG00000123064 DDX54 DP97 DEAD-box helicase 54 protein-coding 11176 chr16 27550040 27550144 + 0 NA promoter-TSS (NM_001286242) promoter-TSS (NM_001286242) -55 NM_015202 23247 Hs.460459 NM_015202 ENSG00000047578 KIAA0556 JBTS26 KIAA0556 protein-coding 15302 chr2 30872231 30872335 + 0 NA Intergenic MSTB1|LTR|ERVL-MaLR -64838 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 868 chr1 51661191 51661241 + 0 NA intron (NR_036662, intron 2 of 22) intron (NR_036662, intron 2 of 22) 44342 NM_148906 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 13448 chr18 36309541 36309701 + 0 NA intron (NM_025135, intron 1 of 24) intron (NM_025135, intron 1 of 24) 11925 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 10538 chr15 80662860 80662991 + 0 NA Intergenic L3|LINE|CR1 -32386 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 20501 chr3 157263135 157263253 + 0 NA intron (NM_001167911, intron 12 of 12) intron (NM_001167911, intron 12 of 12) -102434 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 15322 chr2 32189837 32189941 + 0 NA intron (NM_001193514, intron 5 of 12) AluJr4|SINE|Alu 24048 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 5189 chr11 38019389 38019493 + 0 NA Intergenic L1PA13|LINE|L1 80840 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 29378 chr9 83062924 83063093 + 0 NA 5' UTR (NM_152573, exon 1 of 17) 5' UTR (NM_152573, exon 1 of 17) 120 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 27526 chr8 23069030 23069179 + 0 NA promoter-TSS (NM_147187) promoter-TSS (NM_147187) 83 NM_147187 8795 Hs.521456 NM_003842 ENSG00000120889 TNFRSF10B CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9 TNF receptor superfamily member 10b protein-coding 18896 chr22 38656236 38656340 + 0 NA promoter-TSS (NM_015373) promoter-TSS (NM_015373) 341 NM_001013647 646851 Hs.542707 NM_001013647 ENSG00000184949 FAM227A - family with sequence similarity 227 member A protein-coding 6073 chr11 111735773 111735847 + 0 NA intron (NM_181699, intron 15 of 15) intron (NM_181699, intron 15 of 15) 30635 NM_001177562 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 8719 chr14 23058160 23058214 + 0 NA promoter-TSS (NM_022478) promoter-TSS (NM_022478) -649 NM_022478 64403 Hs.155912 NM_022478 ENSG00000139880 CDH24 CDH11L cadherin 24 protein-coding 853 chr1 48876334 48876438 + 0 NA intron (NM_001323573, intron 5 of 12) intron (NM_001323573, intron 5 of 12) -99417 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 7487 chr12 97944704 97944808 + 0 NA Intergenic Intergenic -5635 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 18697 chr22 24402604 24402760 + 0 NA intron (NM_001254732, intron 13 of 14) intron (NM_001254732, intron 13 of 14) -20915 NM_001278500 135 Hs.197029 NM_000675 ENSG00000128271 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 18975 chr22 42614895 42615048 + 0 NA promoter-TSS (NM_001278657) promoter-TSS (NM_001278657) -9 NM_032311 84271 Hs.505802 NM_032311 ENSG00000100227 POLDIP3 PDIP46|SKAR DNA polymerase delta interacting protein 3 protein-coding 11550 chr16 69073433 69073581 + 0 NA intron (NM_024562, intron 17 of 17) L2c|LINE|L2 -32057 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 28705 chr8 131916595 131916699 + 0 NA promoter-TSS (NM_001323557) promoter-TSS (NM_001323557) -107 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 3517 chr10 30583786 30583910 + 0 NA Intergenic Intergenic 45870 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 25016 chr6 110982002 110982106 + 0 NA promoter-TSS (NM_001289111) promoter-TSS (NM_001289111) 37 NM_032194 84154 Hs.372265 NM_032194 ENSG00000197498 RPF2 BXDC1|bA397G5.4 ribosome production factor 2 homolog protein-coding 11717 chr16 81405893 81405905 + 0 NA Intergenic Intergenic 20881 NR_039871 100616150 NR_039871 ENSG00000261609 MIR4720 - microRNA 4720 ncRNA 26040 chr7 35037741 35037833 + 0 NA intron (NM_015283, intron 1 of 21) CpG 254 NM_015283 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like 1 protein-coding 30992 chrX 116272380 116272484 + 0 NA Intergenic L2c|LINE|L2 101727 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 28655 chr8 128167894 128167905 + 0 NA Intergenic Intergenic 17783 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 25098 chr6 124743086 124743190 + 0 NA intron (NM_001040214, intron 4 of 6) MIR|SINE|MIR -219407 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 22666 chr5 67880983 67881087 + 0 NA Intergenic MIRc|SINE|MIR 87822 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 29279 chr9 76180651 76180770 + 0 NA intron (NM_001190482, intron 15 of 36) intron (NM_001190482, intron 15 of 36) 213818 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 20838 chr3 185299131 185299174 + 0 NA intron (NM_001242317, intron 2 of 12) L1MCc|LINE|L1 16211 NR_038322 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 20840 chr3 185332567 185332717 + 0 NA intron (NM_001242317, intron 2 of 12) L1MB2|LINE|L1 -30406 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 14159 chr19 13169902 13170112 + 0 NA Intergenic Intergenic 19539 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 3249 chr10 6239339 6239464 + 0 NA Intergenic Intergenic 36524 NM_001323017 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 4608 chr10 129467077 129467157 + 0 NA promoter-TSS (NM_002412) promoter-TSS (NM_002412) -67 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 22702 chr5 72471024 72471128 + 0 NA intron (NM_152625, intron 1 of 4) intron (NM_152625, intron 1 of 4) 36346 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DCSCRIPT zinc finger protein 366 protein-coding 2238 chr1 185157050 185157160 + 0 NA promoter-TSS (NM_001202423) promoter-TSS (NM_001202423) -7 NM_001202423 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 29885 chr9 112113185 112113289 + 0 NA intron (NM_022486, intron 6 of 16) intron (NM_022486, intron 6 of 16) 62060 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 6853 chr12 33587370 33587474 + 0 NA Intergenic Intergenic -147603 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 28069 chr8 79828433 79828563 + 0 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 43239 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 18257 chr20 53829480 53829584 + 0 NA Intergenic Intergenic 46177 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 23927 chr6 4459240 4459393 + 0 NA Intergenic Intergenic 31314 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 1878 chr1 158146342 158146426 + 0 NA Intergenic MER70-int|LTR|ERVL -5744 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 9728 chr14 103625014 103625118 + 0 NA Intergenic Intergenic -4122 NM_001130107 3831 Hs.20107 NM_005552 ENSG00000126214 KLC1 KLC|KNS2|KNS2A kinesin light chain 1 protein-coding 15805 chr2 73244183 73244287 + 0 NA intron (NR_029403, intron 4 of 10) intron (NR_029403, intron 4 of 10) 9999 NM_006429 10574 Hs.368149 NM_006429 ENSG00000135624 CCT7 CCTETA|CCTH|NIP7-1|TCP1ETA chaperonin containing TCP1 subunit 7 protein-coding 14473 chr19 41176297 41176415 + 0 NA Intergenic Intergenic -16851 NM_030622 29785 Hs.98370 NM_030622 ENSG00000167600 CYP2S1 CYPIIS1 cytochrome P450 family 2 subfamily S member 1 protein-coding 5686 chr11 76381220 76381374 + 0 NA promoter-TSS (NM_004705) promoter-TSS (NM_004705) -6 NM_001347884 100506127 Hs.503319 NM_001013634 ENSG00000179240 LOC100506127 - putative uncharacterized protein FLJ37770-like protein-coding 12784 chr17 59220375 59220539 + 0 NA promoter-TSS (NM_001165994) promoter-TSS (NM_001165994) -10 NM_182569 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 23985 chr6 7975224 7975376 + 0 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) -10802 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 19175 chr3 12763385 12763520 + 0 NA intron (NM_001284406, intron 1 of 11) intron (NM_001284406, intron 1 of 11) -4143 NM_018306 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 8144 chr13 40190738 40190842 + 0 NA Intergenic Intergenic 8981 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 11043 chr16 14378387 14378491 + 0 NA Intergenic Intergenic -8173 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 2964 chr1 233113081 233113163 + 0 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 162280 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 1690 chr1 150629205 150629353 + 0 NA promoter-TSS (NM_207045) promoter-TSS (NM_207045) -146 NM_207047 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding 8940 chr14 45551459 45551613 + 0 NA Intergenic L1PA3|LINE|L1 -298134 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 10645 chr15 88546669 88546753 + 0 NA promoter-TSS (NR_135740) promoter-TSS (NR_135740) -8 NR_135739 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - de-etiolated homolog 1 (Arabidopsis) protein-coding 10878 chr16 2047860 2047979 + 0 NA promoter-TSS (NM_002528) promoter-TSS (NM_002528) 24 NM_001318827 7249 Hs.90303 NM_000548 ENSG00000103197 TSC2 LAM|PPP1R160|TSC4 tuberous sclerosis 2 protein-coding 25694 chr7 12687359 12687586 + 0 NA 5' UTR (NM_001195396, exon 1 of 2) 5' UTR (NM_001195396, exon 1 of 2) 186 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 7090 chr12 54307159 54307287 + 0 NA Intergenic Intergenic -6186 NM_001261461 4778 Hs.75643 NM_006163 ENSG00000123405 NFE2 NF-E2|p45 nuclear factor, erythroid 2 protein-coding 3943 chr10 77505014 77505118 + 0 NA intron (NM_001322832, intron 1 of 27) intron (NM_001322832, intron 1 of 27) 132753 NM_001322837 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 28881 chr9 3525979 3526112 + 0 NA promoter-TSS (NM_001282116) promoter-TSS (NM_001282116) -44 NM_134428 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 5244 chr11 47214296 47214441 + 0 NA promoter-TSS (NM_000107) promoter-TSS (NM_000107) -574 NM_000107 1643 Hs.700338 NM_000107 ENSG00000134574 DDB2 DDBB|UV-DDB2|XPE damage specific DNA binding protein 2 protein-coding 4061 chr10 90930548 90930698 + 0 NA Intergenic Intergenic -9348 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 8470 chr13 97295843 97295963 + 0 NA intron (NM_207304, intron 2 of 6) intron (NM_207304, intron 2 of 6) 73607 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 2918 chr1 229558959 229559144 + 0 NA promoter-TSS (NM_012089) promoter-TSS (NM_012089) -356 NM_012089 23456 Hs.17614 NM_012089 ENSG00000135776 ABCB10 EST20237|M-ABC2|MTABC2 ATP binding cassette subfamily B member 10 protein-coding 7515 chr12 100200000 100200104 + 0 NA promoter-TSS (NM_022496) promoter-TSS (NM_022496) -35 NM_022496 64431 Hs.115088 NM_022496 ENSG00000075089 ACTR6 ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX ARP6 actin-related protein 6 homolog protein-coding 7727 chr12 118543540 118543644 + 0 NA Intergenic Intergenic 167039 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 8206 chr13 44815821 44815944 + 0 NA Intergenic Intergenic -6252 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 19852 chr3 110881205 110881360 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR 188677 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 5704 chr11 77637708 77637866 + 0 NA promoter-TSS (NM_001311201) promoter-TSS (NM_001311201) 19 NM_001311201 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 14029 chr19 8005664 8005768 + 0 NA promoter-TSS (NM_001419) promoter-TSS (NM_001419) -71 NM_001419 1994 Hs.184492 NM_001419 ENSG00000066044 ELAVL1 ELAV1|HUR|Hua|MelG ELAV like RNA binding protein 1 protein-coding 15270 chr2 28649678 28649782 + 0 NA Intergenic Intergenic 83373 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 27890 chr8 58079106 58079210 + 0 NA intron (NM_147189, intron 4 of 4) intron (NM_147189, intron 4 of 4) 84604 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 17481 chr20 3318332 3318436 + 0 NA exon (NM_001009984, exon 17 of 37) exon (NM_001009984, exon 17 of 37) -79143 NM_001174089 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 22463 chr5 43064995 43065083 + 0 NA TTS (NR_034127) TTS (NR_034127) 1932 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 19314 chr3 32420508 32420612 + 0 NA intron (NM_181472, intron 1 of 3) intron (NM_181472, intron 1 of 3) 28889 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 9823 chr15 31457710 31457814 + 0 NA Intergenic Intergenic 130907 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 14390 chr19 36139896 36140013 + 0 NA promoter-TSS (NM_001003962) promoter-TSS (NM_001003962) 28 NM_001749 826 Hs.515371 NM_001749 ENSG00000126247 CAPNS1 CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain small subunit 1 protein-coding 15436 chr2 43159022 43159139 + 0 NA Intergenic Intergenic 67526 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 8775 chr14 28494402 28494505 + 0 NA Intergenic MLT2B2|LTR|ERVL 270866 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 2537 chr1 208179494 208179679 + 0 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 64734 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 2267 chr1 192531167 192531272 + 0 NA Intergenic L2a|LINE|L2 -44508 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 23594 chr5 157328503 157328710 + 0 NA intron (NM_014376, intron 19 of 30) intron (NM_014376, intron 19 of 30) 17115 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 19192 chr3 14144603 14144756 + 0 NA TTS (NM_024334) TTS (NM_024334) 19739 NM_024334 79188 Hs.517817 NM_024334 ENSG00000170876 TMEM43 ARVC5|ARVD5|EDMD7|LUMA transmembrane protein 43 protein-coding 24497 chr6 37576518 37576622 + 0 NA Intergenic Intergenic -21148 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 29318 chr9 78288627 78288731 + 0 NA Intergenic Intergenic -8396 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 27203 chr7 149195461 149195594 + 0 NA promoter-TSS (NM_001303481) promoter-TSS (NM_001303481) 65 NM_003575 8427 Hs.729056 NM_003575 ENSG00000170265 ZNF282 HUB1 zinc finger protein 282 protein-coding 18607 chr22 17329209 17329327 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -30681 NM_001290046 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2, histone acetyl-lysine reader protein-coding 12087 chr17 9017389 9017492 + 0 NA Intergenic L2|LINE|L2 -4102 NM_004822 9423 Hs.660885 NM_004822 ENSG00000065320 NTN1 NTN1L netrin 1 protein-coding 12767 chr17 58083284 58083391 + 0 NA promoter-TSS (NR_110809) promoter-TSS (NR_110809) -82 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 20139 chr3 129893823 129893959 + 0 NA promoter-TSS (NM_001128224) promoter-TSS (NM_001128224) 20 NR_037893 100507032 Hs.529562 NR_037893 ENSG00000271270 TMCC1-AS1 - TMCC1 antisense RNA 1 (head to head) ncRNA 18541 chr21 39048199 39048392 + 0 NA Intergenic Intergenic -70521 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 1682 chr1 150515602 150515778 + 0 NA promoter-TSS (NR_051960) promoter-TSS (NR_051960) -67 NR_051960 100874054 Hs.576460 NR_051960 ENSG00000228126 FALEC FAL1|LINC00568|ncRNA-a1 focally amplified long non-coding RNA in epithelial cancer ncRNA 13930 chr19 3520845 3520989 + 0 NA intron (NM_016263, intron 1 of 13) intron (NM_016263, intron 1 of 13) -2039 NM_001136198 51343 Hs.413133 NM_016263 ENSG00000105325 FZR1 CDC20C|CDH1|FZR|FZR2|HCDH|HCDH1 fizzy/cell division cycle 20 related 1 protein-coding 16167 chr2 113117790 113117898 + 0 NA promoter-TSS (NM_000577) promoter-TSS (NM_000577) -49 NM_173841 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 20030 chr3 122514822 122514993 + 0 NA promoter-TSS (NR_026698) promoter-TSS (NR_026698) 32 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 2781 chr1 223133886 223133990 + 0 NA intron (NM_003268, intron 4 of 5) intron (NM_003268, intron 4 of 5) 9344 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 26791 chr7 106460910 106461056 + 0 NA Intergenic MER41B|LTR|ERV1 -175791 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 15960 chr2 95334092 95334259 + 0 NA intron (NM_013434, intron 2 of 8) intron (NM_013434, intron 2 of 8) -12845 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 27365 chr8 9150650 9150779 + 0 NA promoter-TSS (NM_024607) promoter-TSS (NM_024607) -4 NM_024607 79660 Hs.458513 NM_024607 ENSG00000173281 PPP1R3B GL|PPP1R4|PTG protein phosphatase 1 regulatory subunit 3B protein-coding 24611 chr6 44237565 44237715 + 0 NA Intergenic Intergenic -8526 NM_001271970 3326 Hs.509736 NM_007355 ENSG00000096384 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90 alpha family class B member 1 protein-coding 16858 chr2 195623062 195623166 + 0 NA Intergenic Intergenic -33694 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 8479 chr13 98476669 98476773 + 0 NA intron (NM_001286649, intron 2 of 9) intron (NM_001286649, intron 2 of 9) 45404 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 20132 chr3 129626797 129626925 + 0 NA Intergenic CpG -20122 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 9376 chr14 74763163 74763329 + 0 NA promoter-TSS (NM_019589) promoter-TSS (NM_019589) -120 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 30634 chrX 41391725 41391773 + 0 NA Intergenic Intergenic -55711 NM_022567 60506 Hs.302019 NM_022567 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 10196 chr15 59284039 59284178 + 0 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 77292 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 16532 chr2 159286718 159286737 + 0 NA promoter-TSS (NM_152528) promoter-TSS (NM_152528) 72 NM_001330274 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 21475 chr4 77579542 77579646 + 0 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 67841 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 24064 chr6 13370855 13370878 + 0 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) 37271 NM_001242630 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 29670 chr9 98251746 98251850 + 0 NA exon (NM_001267571, exon 2 of 13) exon (NM_001267571, exon 2 of 13) 3923 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 22639 chr5 65811185 65811248 + 0 NA intron (NM_020726, intron 11 of 12) intron (NM_020726, intron 11 of 12) 89020 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 13357 chr18 26656190 26656294 + 0 NA intron (NM_001258222, intron 1 of 4) CpG 1159 NM_001258222 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 13197 chr18 108053 108204 + 0 NA promoter-TSS (NR_033770) promoter-TSS (NR_033770) -937 NR_033770 727758 Hs.585843 NR_033770 ENSG00000263006 ROCK1P1 - Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudo 6454 chr12 2890792 2890913 + 0 NA promoter-TSS (NM_001160408) promoter-TSS (NM_001160408) -15 NM_001160408 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 tubby like protein 3 protein-coding 8623 chr13 110715612 110715716 + 0 NA exon (NM_005537, exon 1 of 2) intron (NM_001267728, intron 1 of 1) 227 NM_001267728 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 13203 chr18 658263 658367 + 0 NA promoter-TSS (NM_001012716) promoter-TSS (NM_001012716) 25 NM_001012716 494514 Hs.274959 NM_001012716 TYMSOS C18orf56 TYMS opposite strand protein-coding 17507 chr20 4513025 4513101 + 0 NA Intergenic Intergenic -173088 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 3921 chr10 75208252 75208402 + 0 NA Intergenic Intergenic -1827 NM_001184783 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 23571 chr5 154198268 154198460 + 0 NA intron (NM_198321, intron 1 of 11) MIR|SINE|MIR 7629 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 27117 chr7 140518025 140518193 + 0 NA TTS (NM_001318052) TTS (NM_001318052) -38540 NM_001291663 23608 Hs.744883 NM_013446 ENSG00000133606 MKRN1 RNF61 makorin ring finger protein 1 protein-coding 16382 chr2 137975534 137975729 + 0 NA intron (NM_006895, intron 2 of 5) intron (NM_006895, intron 2 of 5) 11393 NM_001024075 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 27700 chr8 38105811 38105836 + 0 NA promoter-TSS (NM_001105214) promoter-TSS (NM_001105214) 30 NM_001261832 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like histone lysine methyltransferase complex subunit protein-coding 26670 chr7 99162471 99162511 + 0 NA Intergenic Intergenic -18371 NM_001199847 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 4290 chr10 103890406 103890558 + 0 NA intron (NM_024928, intron 8 of 9) intron (NM_024928, intron 8 of 9) 27805 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1, CST complex subunit protein-coding 12301 chr17 30600290 30600394 + 0 NA intron (NR_015341, intron 2 of 8) CpG 23877 NR_015341 107133515 Hs.568209 NR_015341 LOC107133515 - SMURF2P1-LRRC37BP1 readthrough transcribed pseudogene pseudo 5754 chr11 83156737 83156841 + 0 NA promoter-TSS (NM_001346415) promoter-TSS (NM_001346415) -306 NM_001346415 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 10720 chr15 91561821 91561925 + 0 NA Intergenic MIRc|SINE|MIR 98534 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 12815 chr17 62423772 62423926 + 0 NA promoter-TSS (NM_181725) promoter-TSS (NM_181725) -36 NM_181725 339175 Hs.381204 NM_181725 ENSG00000087995 METTL2A METTL2 methyltransferase like 2A protein-coding 13026 chr17 75904979 75905108 + 0 NA promoter-TSS (NM_032478) promoter-TSS (NM_032478) 57 NM_032478 64978 Hs.442609 NM_032478 ENSG00000204316 MRPL38 HSPC262|L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 24257 chr6 27472931 27473159 + 0 NA promoter-TSS (NM_001318893) promoter-TSS (NM_001318893) 73 NR_144688 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 17149 chr2 221573508 221573652 + 0 NA intron (NM_001304536, intron 1 of 18) CpG-17047 622 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 4183 chr10 98269563 98269704 + 0 NA Intergenic Intergenic -1383 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 17618 chr20 11890767 11890917 + 0 NA exon (NM_181443, exon 1 of 5) exon (NM_181443, exon 1 of 5) 119 NM_181443 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 12638 chr17 49362377 49362509 + 0 NA promoter-TSS (NM_014897) promoter-TSS (NM_014897) 30 NM_014897 22834 Hs.463375 NM_014897 ENSG00000198740 ZNF652 - zinc finger protein 652 protein-coding 11440 chr16 58249962 58250066 + 0 NA promoter-TSS (NM_001142302) promoter-TSS (NM_001142302) 78 NM_014157 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 16915 chr2 200812548 200812652 + 0 NA promoter-TSS (NR_110275) promoter-TSS (NR_110275) 267 NM_001207068 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 9170 chr14 62957708 62957812 + 0 NA intron (NM_172375, intron 6 of 9) MLT1H|LTR|ERVL-MaLR 87478 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 25471 chr6 166383025 166383091 + 0 NA promoter-TSS (NM_001270879) promoter-TSS (NM_001270879) -45 NM_001270879 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|dJ68L15.3 mitochondrial pyruvate carrier 1 protein-coding 4011 chr10 84632952 84633056 + 0 NA Intergenic MER41C|LTR|ERV1 207822 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 29698 chr9 100028237 100028368 + 0 NA intron (NM_015051, intron 4 of 11) intron (NM_015051, intron 4 of 11) 70750 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 27455 chr8 18232281 18232385 + 0 NA Intergenic L1MA9|LINE|L1 10665 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 6402 chr11 133956949 133957105 + 0 NA promoter-TSS (NM_001277285) promoter-TSS (NM_001277285) -273 NM_001277285 22997 Hs.204121 NM_014987 ENSG00000080854 IGSF9B - immunoglobulin superfamily member 9B protein-coding 25028 chr6 112204177 112204281 + 0 NA intron (NM_002290, intron 4 of 38) L2a|LINE|L2 -32367 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 23265 chr5 135140924 135141038 + 0 NA intron (NM_001277348, intron 2 of 5) intron (NM_001277348, intron 2 of 5) -100934 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 CTC-276P9.1|Epist C5orf66 antisense RNA 1 ncRNA 3714 chr10 58334899 58335005 + 0 NA promoter-TSS (NM_001204880) promoter-TSS (NM_001204880) -27 NM_003338 7321 Hs.129683 NM_003338 ENSG00000072401 UBE2D1 E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A ubiquitin conjugating enzyme E2 D1 protein-coding 13985 chr19 5790670 5790847 + 0 NA intron (NM_020175, intron 1 of 12) CpG 480 NM_020175 56931 Hs.284297 NM_020175 ENSG00000141994 DUS3L DUS3 dihydrouridine synthase 3 like protein-coding 24940 chr6 99219872 99219976 + 0 NA Intergenic Intergenic 95315 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 21023 chr3 194682732 194682858 + 0 NA Intergenic Intergenic -3098 NM_153690 131583 Hs.435080 NM_153690 ENSG00000185112 FAM43A - family with sequence similarity 43 member A protein-coding 28191 chr8 93068497 93068534 + 0 NA Intergenic Intergenic 38764 NR_107051 102467005 NR_107051 ENSG00000277063 MIR8084 hsa-mir-8084 microRNA 8084 ncRNA 11901 chr17 1770289 1770449 + 0 NA intron (NM_002615, intron 3 of 7) intron (NM_002615, intron 3 of 7) -1302 NM_001329905 5176 Hs.532768 NM_002615 ENSG00000132386 SERPINF1 EPC-1|OI12|OI6|PEDF|PIG35 serpin family F member 1 protein-coding 27059 chr7 135291986 135292090 + 0 NA Intergenic Intergenic 60059 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 21744 chr4 119212644 119212644 + 0 NA promoter-TSS (NM_019050) promoter-TSS (NM_019050) 0 NR_125931 101929762 Hs.570735 NR_125931 LOC101929762 - uncharacterized LOC101929762 ncRNA 8670 chr14 20707754 20707844 + 0 NA Intergenic MER21C|LTR|ERVL 19022 NM_194431 6038 Hs.283749 NM_002937 ENSG00000258818 RNASE4 RAB1|RNS4 ribonuclease A family member 4 protein-coding 11851 chr16 89565769 89565873 + 0 NA 3' UTR (NM_000977, exon 6 of 6) 3' UTR (NM_000977, exon 6 of 6) 4391 NR_002450 606500 NR_002450 SNORD68 HBII-202 small nucleolar RNA, C/D box 68 snoRNA 28276 chr8 98826009 98826159 + 0 NA promoter-TSS (NM_001256313) promoter-TSS (NM_001256313) -403 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 20154 chr3 131110210 131110392 + 0 NA intron (NM_001321220, intron 4 of 16) intron (NM_001321220, intron 4 of 16) 82573 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 6234 chr11 122197053 122197152 + 0 NA intron (NR_137179, intron 2 of 4) intron (NR_137179, intron 2 of 4) 6007 NR_024430 399959 Hs.44098 NR_024430 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2 cluster host gene ncRNA 18696 chr22 24303521 24303652 + 0 NA intron (NR_103546, intron 3 of 19) intron (NR_103546, intron 3 of 19) 32769 NM_015330 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1 sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 18763 chr22 29617998 29618153 + 0 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 14519 NM_181832 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 12152 chr17 17018786 17018796 + 0 NA Intergenic Intergenic -23969 NM_201274 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 19621 chr3 63911966 63912039 + 0 NA intron (NM_000333, intron 2 of 12) CpG 13603 NM_001177387 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7 ataxin 7 protein-coding 29122 chr9 66900583 66900736 + 0 NA promoter-TSS (NM_001317916) promoter-TSS (NM_001317916) -66 NM_001317916 26149 Hs.522147 NM_033160 ENSG00000274349 ZNF658 - zinc finger protein 658 protein-coding 19036 chr22 46774024 46774100 + 0 NA 5' UTR (NM_001284305, exon 1 of 13) 5' UTR (NM_001284305, exon 1 of 13) 135 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 25211 chr6 138035210 138035289 + 0 NA Intergenic Intergenic 72274 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 7900 chr12 131894548 131894701 + 0 NA promoter-TSS (NM_003565) promoter-TSS (NM_003565) -110 NM_003565 8408 Hs.47061 NM_003565 ENSG00000177169 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 18824 chr22 32991896 32991993 + 0 NA intron (NM_001135774, intron 2 of 13) intron (NM_001135774, intron 2 of 13) 14877 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 20329 chr3 143443847 143444026 + 0 NA intron (NM_173653, intron 12 of 15) intron (NM_173653, intron 12 of 15) 101690 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 13662 chr18 59718258 59718432 + 0 NA Intergenic Intergenic -20933 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 27883 chr8 57052347 57052500 + 0 NA Intergenic Intergenic -58552 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 13552 chr18 49492490 49492594 + 0 NA promoter-TSS (NM_001199340) promoter-TSS (NM_001199340) 23 NM_001199356 100526842 Hs.374588 NM_001199355 ENSG00000215472 RPL17-C18orf32 - RPL17-C18orf32 readthrough protein-coding 27913 chr8 60516825 60516964 + 0 NA promoter-TSS (NM_002865) promoter-TSS (NM_002865) -16 NM_002865 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 23087 chr5 119335103 119335207 + 0 NA intron (NM_001286814, intron 1 of 1) intron (NM_001286814, intron 1 of 1) 1980 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 22855 chr5 89556318 89556422 + 0 NA Intergenic Intergenic 460350 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 2546 chr1 209039451 209039568 + 0 NA Intergenic Intergenic -285947 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 5943 chr11 100562215 100562319 + 0 NA Intergenic Intergenic -125409 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 11918 chr17 2399659 2399702 + 0 NA intron (NM_020310, intron 1 of 5) CpG 1284 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 30115 chr9 125663266 125663370 + 0 NA intron (NM_001006621, intron 1 of 9) L2a|LINE|L2 43916 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 8423 chr13 80086587 80086588 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 75510 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 5498 chr11 65873662 65873783 + 0 NA promoter-TSS (NM_016938) promoter-TSS (NM_016938) -788 NM_016938 30008 Hs.731454 NM_016938 ENSG00000172638 EFEMP2 ARCL1B|FBLN4|MBP1|UPH1 EGF containing fibulin like extracellular matrix protein 2 protein-coding 16317 chr2 130355973 130356089 + 0 NA promoter-TSS (NM_001142370) promoter-TSS (NM_001142370) 24 NM_001142370 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase, non-receptor type 18 protein-coding 16214 chr2 119431757 119431861 + 0 NA promoter-TSS (NM_183240) promoter-TSS (NM_183240) -61 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 22570 chr5 57383328 57383451 + 0 NA Intergenic Intergenic 99420 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding 6946 chr12 48001025 48001136 + 0 NA intron (NM_001844, intron 1 of 53) intron (NM_001844, intron 1 of 53) 3422 NM_001844 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 9308 chr14 70600610 70600764 + 0 NA promoter-TSS (NM_001284209) promoter-TSS (NM_001284209) 3 NM_001284211 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 22019 chr4 173209589 173209738 + 0 NA intron (NM_017423, intron 1 of 11) intron (NM_017423, intron 1 of 11) -40011 NR_134241 101930370 Hs.563191 NR_134241 ENSG00000245213 LOC101930370 - uncharacterized LOC101930370 ncRNA 29060 chr9 34646630 34646634 + 0 NA promoter-TSS (NM_000155) promoter-TSS (NM_000155) 43 NM_000155 2592 Hs.522090 NM_000155 ENSG00000213930 GALT - galactose-1-phosphate uridylyltransferase protein-coding 2666 chr1 214427972 214428076 + 0 NA intron (NM_005401, intron 3 of 18) L2a|LINE|L2 123657 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 9342 chr14 73136860 73136999 + 0 NA intron (NM_007318, intron 1 of 11) CpG 494 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 3599 chr10 41896133 41896287 + 0 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 471835 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 9111 chr14 59275892 59275976 + 0 NA intron (NM_014992, intron 1 of 24) intron (NM_014992, intron 1 of 24) 12493 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 21357 chr4 51844626 51844819 + 0 NA intron (NM_001287755, intron 1 of 10) CpG 1143 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 18317 chr20 57693120 57693340 + 0 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -2606 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 34 chr1 2050291 2050348 + 0 NA promoter-TSS (NM_002744) promoter-TSS (NM_002744) -151 NM_002744 5590 Hs.496255 NM_002744 ENSG00000067606 PRKCZ PKC-ZETA|PKC2 protein kinase C zeta protein-coding 12198 chr17 19648713 19648862 + 0 NA promoter-TSS (NM_001031806) promoter-TSS (NM_001031806) 36 NM_001031806 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 14565 chr19 45528361 45528465 + 0 NA 3' UTR (NM_001017989, exon 2 of 2) 3' UTR (NM_001017989, exon 2 of 2) 20983 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator-stimulated phosphoprotein protein-coding 10141 chr15 55627862 55627991 + 0 NA intron (NM_173814, intron 16 of 19) MER5A1|DNA|hAT-Charlie -39074 NM_015617 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 31195 chrX 154600445 154600558 + 0 NA Intergenic Intergenic 15347 NM_139250 246100 Hs.534310 NM_139250 ENSG00000268651 CTAG1A CT6.1|ESO1|LAGE-2|LAGE2A|NY-ESO-1 cancer/testis antigen 1A protein-coding 1410 chr1 100785919 100786023 + 0 NA Intergenic MER72|LTR|ERV1 66331 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 26201 chr7 46258144 46258289 + 0 NA Intergenic L2a|LINE|L2 -336944 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 29860 chr9 110970011 110970061 + 0 NA intron (NM_001401, intron 2 of 3) L1ME3G|LINE|L1 68049 NM_001401 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 23260 chr5 134845886 134846048 + 0 NA promoter-TSS (NM_001135586) promoter-TSS (NM_001135586) -1 NM_001300894 134553 Hs.708536 NM_152409 ENSG00000181904 C5orf24 - chromosome 5 open reading frame 24 protein-coding 1434 chr1 107056585 107056714 + 0 NA promoter-TSS (NM_018137) promoter-TSS (NM_018137) 4 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 17957 chr20 37071548 37071613 + 0 NA intron (NM_183404, intron 2 of 20) AluJb|SINE|Alu 24635 NM_001323282 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 11512 chr16 67857913 67858047 + 0 NA intron (NM_001322041, intron 1 of 4) intron (NM_001322041, intron 1 of 4) -10522 NM_025082 80152 Hs.288382 NM_025082 ENSG00000102901 CENPT C16orf56|CENP-T centromere protein T protein-coding 17822 chr20 25623994 25624092 + 0 NA promoter-TSS (NR_126467) promoter-TSS (NR_126467) -2 NR_126465 102724826 Hs.633621 NR_126465 ENSG00000213742 ZNF337-AS1 - ZNF337 antisense RNA 1 ncRNA 21249 chr4 23373385 23373500 + 0 NA Intergenic Intergenic 507850 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 3457 chr10 25060079 25060287 + 0 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 2096 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 2471 chr1 204915989 204916065 + 0 NA intron (NM_001160332, intron 1 of 27) intron (NM_001160332, intron 1 of 27) -28199 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NF|NRCAML neurofascin protein-coding 1547 chr1 114511146 114511303 + 0 NA promoter-TSS (NM_015906) promoter-TSS (NM_015906) -64 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 25189 chr6 135722842 135722904 + 0 NA Intergenic Intergenic -128823 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 24001 chr6 9511295 9511441 + 0 NA Intergenic Intergenic 859159 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 1045 chr1 65254499 65254575 + 0 NA Intergenic CpG -10157 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 11145 chr16 23699240 23699349 + 0 NA intron (NM_001308220, intron 12 of 20) intron (NM_001308220, intron 12 of 20) 14206 NM_033266 10595 Hs.592041 NM_033266 ENSG00000134398 ERN2 IRE1-BETA|IRE1b|IRE2p|hIRE2p endoplasmic reticulum to nucleus signaling 2 protein-coding 23856 chr6 693097 693187 + 0 NA promoter-TSS (NM_018303) promoter-TSS (NM_018303) -1 NM_018303 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 15122 chr2 19488441 19488545 + 0 NA Intergenic Intergenic -129882 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transciption factor 1 protein-coding 19594 chr3 58237489 58237524 + 0 NA promoter-TSS (NM_020676) promoter-TSS (NM_020676) 4 NM_001320126 57406 Hs.476454 NM_020676 ENSG00000163686 ABHD6 - abhydrolase domain containing 6 protein-coding 11577 chr16 70439240 70439329 + 0 NA promoter-TSS (NM_006927) promoter-TSS (NM_006927) -196 NM_006927 6483 Hs.368611 NM_006927 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 22053 chr4 177596202 177596282 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR -132515 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 18422 chr21 15065052 15065066 + 0 NA promoter-TSS (NM_003489) promoter-TSS (NM_003489) -254 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 10259 chr15 63497109 63497213 + 0 NA Intergenic Intergenic -7350 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 5998 chr11 105368824 105368982 + 0 NA Intergenic Intergenic -229169 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 30538 chrX 18984524 18984628 + 0 NA promoter-TSS (NM_000292) promoter-TSS (NM_000292) -214 NM_000292 5256 Hs.54941 NM_000292 ENSG00000044446 PHKA2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 phosphorylase kinase regulatory subunit alpha 2 protein-coding 20374 chr3 149576203 149576373 + 0 NA intron (NM_001168278, intron 3 of 7) intron (NM_001168278, intron 3 of 7) 81737 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 17559 chr20 6993132 6993262 + 0 NA Intergenic Intergenic 225099 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 17624 chr20 12409667 12409771 + 0 NA Intergenic Intergenic 491854 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 26033 chr7 34464005 34464139 + 0 NA intron (NR_033665, intron 2 of 3) L1MC3|LINE|L1 -194167 NM_001300934 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 23139 chr5 126423137 126423163 + 0 NA promoter-TSS (NM_001146320) promoter-TSS (NM_001146320) -27 NM_001146321 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 26238 chr7 48168302 48168406 + 0 NA Intergenic MLT2B4|LTR|ERVL -3106 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 12653 chr17 49952636 49952673 + 0 NA Intergenic Intergenic -16544 NM_138281 1748 Hs.591167 NM_001934 ENSG00000108813 DLX4 BP1|DLX7|DLX8|DLX9|OFC15 distal-less homeobox 4 protein-coding 1849 chr1 156421724 156421855 + 0 NA promoter-TSS (NM_001320454) promoter-TSS (NM_001320454) -23 NR_135265 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 12981 chr17 74776280 74776434 + 0 NA promoter-TSS (NM_001305077) promoter-TSS (NM_001305077) 68 NM_001305086 26151 Hs.144058 NM_015654 ENSG00000109065 NAT9 EBSP, hNATL N-acetyltransferase 9 (putative) protein-coding 492 chr1 28914361 28914465 + 0 NA promoter-TSS (NM_001166006) promoter-TSS (NM_001166006) -163 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 14839 chr19 57302234 57302286 + 0 NA Intergenic L1M2a|LINE|L1 -18237 NM_213598 125919 Hs.202544 NM_213598 ENSG00000178229 ZNF543 - zinc finger protein 543 protein-coding 23477 chr5 149011143 149011297 + 0 NA intron (NM_024577, intron 13 of 16) intron (NM_024577, intron 13 of 16) 51189 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 20638 chr3 170908600 170908704 + 0 NA promoter-TSS (NM_020390) promoter-TSS (NM_020390) -15 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 24082 chr6 14060217 14060303 + 0 NA Intergenic Intergenic -56996 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 24330 chr6 30617715 30617869 + 0 NA promoter-TSS (NM_014046).5 promoter-TSS (NM_014046).5 83 NM_014046 28973 Hs.655329 NM_014046 ENSG00000204568 MRPS18B C6orf14|HSPC183|HumanS18a|MRP-S18-2|MRPS18-2|PTD017|S18amt mitochondrial ribosomal protein S18B protein-coding 2271 chr1 192700916 192701020 + 0 NA Intergenic Intergenic -15360 NR_039624 100616345 NR_039624 MIR4426 - microRNA 4426 ncRNA 9385 chr14 75126993 75127128 + 0 NA promoter-TSS (NM_001329237) promoter-TSS (NM_001329237) 20 NM_001329238 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 25403 chr6 157380032 157380136 + 0 NA Intergenic CpG -1441 NM_153746 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 15315 chr2 31467522 31467610 + 0 NA Intergenic Intergenic -52821 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 29115 chr9 62838423 62838575 + 0 NA promoter-TSS (NR_135128) promoter-TSS (NR_135128) 54 NR_024496 442421 Hs.585349 NR_024496 PTGER4P2-CDK2AP2P2 - PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene pseudo 9177 chr14 63179038 63179207 + 0 NA Intergenic MER91A|DNA|hAT-Tip100 -25262 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 8032 chr13 28753640 28753744 + 0 NA Intergenic Intergenic -34679 NM_001135919 283537 Hs.117167 NM_181785 ENSG00000139508 SLC46A3 FKSG16 solute carrier family 46 member 3 protein-coding 28405 chr8 106900977 106901081 + 0 NA Intergenic L1PA17|LINE|L1 -130785 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 29955 chr9 115275786 115275890 + 0 NA intron (NM_017418, intron 2 of 7) L1MA3|LINE|L1 134020 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 25783 chr7 18974893 18974997 + 0 NA intron (NM_178425, intron 23 of 24) intron (NM_178425, intron 23 of 24) 142727 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 25136 chr6 128519339 128519384 + 0 NA intron (NM_001135648, intron 1 of 30) CpG 1313 NM_001291983 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type K protein-coding 1939 chr1 161531123 161531182 + 0 NA Intergenic tRNA-Gly-GGA|tRNA|tRNA 6612 NM_002155 3310 Hs.654614 NM_002155 ENSG00000173110 HSPA6 HSP70B' heat shock protein family A (Hsp70) member 6 protein-coding 5384 chr11 62761523 62761654 + 0 NA promoter-TSS (NM_002696) promoter-TSS (NM_002696) 49 NM_002696 5436 Hs.14839 NM_002696 ENSG00000168002 POLR2G RPB19|RPB7|hRPB19|hsRPB7 RNA polymerase II subunit G protein-coding 8287 chr13 51644057 51644161 + 0 NA intron (NM_052950, intron 1 of 11) intron (NM_052950, intron 1 of 11) 59761 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 11090 chr16 19595587 19595699 + 0 NA intron (NM_020314, intron 8 of 30) intron (NM_020314, intron 8 of 30) 40228 NM_020314 57020 Hs.654964 NM_020314 ENSG00000103544 C16orf62 - chromosome 16 open reading frame 62 protein-coding 30015 chr9 120580191 120580303 + 0 NA promoter-TSS (NM_018249) promoter-TSS (NM_018249) -77 NR_073555 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 10512 chr15 78952034 78952138 + 0 NA Intergenic Intergenic -6988 NM_001319137 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 5853 chr11 93234738 93234884 + 0 NA Intergenic Intergenic -36836 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 26433 chr7 75528149 75528305 + 0 NA promoter-TSS (NR_028059) promoter-TSS (NR_028059) -104 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 17851 chr20 31710868 31711008 + 0 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -10569 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 10750 chr15 94029606 94029714 + 0 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 78278 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 29776 chr9 107351739 107351843 + 0 NA Intergenic Intergenic 67022 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 19556 chr3 53130357 53130419 + 0 NA promoter-TSS (NM_052859) promoter-TSS (NM_052859) 66 NM_052859 91869 Hs.631910 NM_052859 ENSG00000163933 RFT1 CDG1N RFT1 homolog protein-coding 23051 chr5 115355931 115356066 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -59237 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 17622 chr20 12053506 12053610 + 0 NA Intergenic Intergenic 135693 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 7394 chr12 89524742 89524846 + 0 NA promoter-TSS (NM_003774) promoter-TSS (NM_003774) 12 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 28948 chr9 16335971 16336095 + 0 NA Intergenic Intergenic -59720 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 27832 chr8 53317191 53317265 + 0 NA Intergenic Intergenic -65531 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 6112 chr11 114160123 114160247 + 0 NA intron (NM_001018011, intron 3 of 6) intron (NM_001018011, intron 3 of 6) 99619 NM_001018011 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 17536 chr20 5919370 5919474 + 0 NA intron (NM_001819, intron 3 of 4) intron (NM_001819, intron 3 of 4) 8094 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 22645 chr5 66144196 66144300 + 0 NA promoter-TSS (NM_001077199) promoter-TSS (NM_001077199) 30 NM_001270492 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 19015 chr22 45934685 45934789 + 0 NA intron (NM_058238, intron 2 of 3) intron (NM_058238, intron 2 of 3) 42391 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 24959 chr6 105374134 105374280 + 0 NA intron (NM_002726, intron 4 of 14) intron (NM_002726, intron 4 of 14) 28917 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 24673 chr6 49556606 49556735 + 0 NA Intergenic Intergenic 6270 NM_001145652 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 10666 chr15 89472878 89473012 + 0 NA intron (NR_110261, intron 9 of 10) intron (NR_110261, intron 9 of 10) 23638 NM_001321041 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 14684 chr19 49391988 49392134 + 0 NA intron (NM_144688, intron 2 of 19) intron (NM_144688, intron 2 of 19) 3843 NM_144688 147872 Hs.662085 NM_144688 ENSG00000161609 CCDC155 KASH5 coiled-coil domain containing 155 protein-coding 4554 chr10 124152308 124152412 + 0 NA Intergenic Intergenic -58753 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 12913 chr17 69733806 69733957 + 0 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 139894 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 17181 chr2 224086707 224086811 + 0 NA Intergenic Intergenic -47440 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 1603 chr1 119279642 119279673 + 0 NA Intergenic Intergenic -89119 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 16931 chr2 202032962 202033066 + 0 NA Intergenic CpG -1573 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 4403 chr10 114526820 114526959 + 0 NA promoter-TSS (NM_001322900) promoter-TSS (NM_001322900) 37 NM_006720 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 22678 chr5 69093837 69094033 + 0 NA promoter-TSS (NM_001251969) promoter-TSS (NM_001251969) -14 NM_001251969 64924 Hs.631975 NM_022902 ENSG00000145740 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 member 5 protein-coding 28120 chr8 85177812 85177932 + 0 NA promoter-TSS (NR_134311) promoter-TSS (NR_134311) 488 NM_001951 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 13476 chr18 44409645 44409749 + 0 NA intron (NR_110792, intron 2 of 4) MLT2B4|LTR|ERVL 122000 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 2049 chr1 169485916 169486072 + 0 NA promoter-TSS (NM_001319667) promoter-TSS (NM_001319667) -24 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 8336 chr13 71713129 71713233 + 0 NA intron (NM_004392, intron 1 of 6) intron (NM_004392, intron 1 of 6) 154011 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 11398 chr16 56519965 56520121 + 0 NA promoter-TSS (NM_031885) promoter-TSS (NM_031885) 53 NM_031885 583 Hs.333738 NM_031885 ENSG00000125124 BBS2 BBS|RP74 Bardet-Biedl syndrome 2 protein-coding 1558 chr1 115062828 115062976 + 0 NA intron (NM_001308315, intron 2 of 6) intron (NM_001308315, intron 2 of 6) 26598 NM_001308316 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 4241 chr10 102056001 102056033 + 0 NA intron (NM_024541, intron 1 of 25) CpG 158 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 C10orf76 - chromosome 10 open reading frame 76 protein-coding 16147 chr2 112542401 112542529 + 0 NA promoter-TSS (NR_136321) promoter-TSS (NR_136321) -253 NR_136321 105373562 Hs.599548 NR_136321 LOC105373562 - uncharacterized LOC105373562 ncRNA 5794 chr11 86245170 86245306 + 0 NA exon (NM_001308007, exon 1 of 13) exon (NM_001308007, exon 1 of 13) 854 NM_003797 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 4881 chr11 14036588 14036772 + 0 NA intron (NM_006108, intron 2 of 15) L2|LINE|L2 74043 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 22436 chr5 40679789 40679933 + 0 NA promoter-TSS (NM_000958) promoter-TSS (NM_000958) -69 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 22514 chr5 53008895 53008999 + 0 NA intron (NR_073107, intron 1 of 28) LTR40c|LTR|ERVL 19621 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 10387 chr15 70863636 70863740 + 0 NA intron (NM_001284357, intron 1 of 16) LTR88b|LTR|Gypsy? -9423 NM_197958 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 11983 chr17 5111906 5112069 + 0 NA promoter-TSS (NR_135657) promoter-TSS (NR_135657) 52 NR_135657 101928000 Hs.660048 NR_135657 ENSG00000234327 LOC101928000 - uncharacterized LOC101928000 ncRNA 21413 chr4 67712192 67712296 + 0 NA intron (NR_015439, intron 1 of 1) intron (NR_015439, intron 1 of 1) 10966 NR_015439 550112 Hs.479879 NR_015439 ENSG00000248049 UBA6-AS1 - UBA6 antisense RNA 1 (head to head) ncRNA 14782 chr19 54200687 54200804 + 0 NA promoter-TSS (NM_001321705) promoter-TSS (NM_001321705) -113 NM_001321701 6203 Hs.467284 NM_001013 ENSG00000170889 RPS9 S9 ribosomal protein S9 protein-coding 20098 chr3 127768466 127768570 + 0 NA intron (NM_001003794, intron 3 of 7) intron (NM_001003794, intron 3 of 7) 54364 NM_007283 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 8117 chr13 36819149 36819287 + 0 NA promoter-TSS (NM_000538) promoter-TSS (NM_000538) 16 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 747 chr1 42967167 42967312 + 0 NA intron (NR_033967, intron 1 of 3) intron (NR_033967, intron 1 of 3) -8063 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 159 chr1 10890918 10891027 + 0 NA Intergenic Intergenic 91065 NM_001170754 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 10677 chr15 89893965 89894101 + 0 NA non-coding (NR_023361, exon 1 of 7) non-coding (NR_023361, exon 1 of 7) 352 NR_023361 10239 Hs.632161 NM_005829 ENSG00000157823 AP3S2 AP3S3|sigma3b adaptor related protein complex 3 sigma 2 subunit protein-coding 17270 chr2 231611844 231611915 + 0 NA Intergenic Intergenic 19015 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 10367 chr15 70023305 70023360 + 0 NA Intergenic MER66B|LTR|ERV1 56136 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 14522 chr19 44356604 44356698 + 0 NA promoter-TSS (NM_013380) promoter-TSS (NM_013380) 53 NM_013380 7771 Hs.48589 NM_013380 ENSG00000062370 ZNF112 ZFP112|ZNF228 zinc finger protein 112 protein-coding 25642 chr7 6842731 6842879 + 0 NA Intergenic HERVE-int|LTR|ERV1 -16510 NM_198097 221960 Hs.567779 NM_198097 ENSG00000146574 CCZ1B C7orf28B|H_NH0577018.2 CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated protein-coding 21845 chr4 142405476 142405652 + 0 NA intron (NM_003866, intron 6 of 26) intron (NM_003866, intron 6 of 26) 440971 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 13934 chr19 3700535 3700665 + 0 NA promoter-TSS (NM_001195733) promoter-TSS (NM_001195733) -108 NM_001300849 23396 Hs.282177 NM_012398 ENSG00000186111 PIP5K1C LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma phosphatidylinositol-4-phosphate 5-kinase type 1 gamma protein-coding 4540 chr10 122879677 122879739 + 0 NA promoter-TSS (NM_001204364) promoter-TSS (NM_001204364) -67 NR_037915 100533195 Hs.647182 NR_037915 FAM24B-CUZD1 - FAM24B-CUZD1 readthrough ncRNA 30498 chrX 12947313 12947465 + 0 NA Intergenic Intergenic -4089 NR_030727 349408 Hs.685035 NR_030727 ENSG00000233338 TLR8-AS1 GS1-324M7.6 TLR8 antisense RNA 1 ncRNA 1427 chr1 103525430 103525534 + 0 NA promoter-TSS (NM_017619) promoter-TSS (NM_017619) 29 NM_001347930 101928436 Hs.558999 NM_001286997 ENSG00000224613 LOC101928436 - uncharacterized LOC101928436 protein-coding 1017 chr1 64006863 64006967 + 0 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 105290 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 14377 chr19 35702386 35702492 + 0 NA Intergenic CpG -2048 NM_014383 27033 Hs.99430 NM_014383 ENSG00000011590 ZBTB32 FAXF|FAZF|Rog|TZFP|ZNF538 zinc finger and BTB domain containing 32 protein-coding 1057 chr1 66575898 66576014 + 0 NA intron (NM_032291, intron 1 of 24) intron (NM_032291, intron 1 of 24) 42000 NM_032291 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 5375 chr11 62646592 62646748 + 0 NA promoter-TSS (NM_001278192) promoter-TSS (NM_001278192) 56 NM_198334 23193 Hs.595071 NM_014610 ENSG00000089597 GANAB G2AN|GIIA|GLUII|PKD3 glucosidase II alpha subunit protein-coding 27344 chr8 8268840 8268990 + 0 NA Intergenic Intergenic 40345 NR_024363 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 27198 chr7 149065891 149066020 + 0 NA Intergenic CpG 24822 NM_152411 136051 Hs.729572 NM_152411 ENSG00000197362 ZNF786 - zinc finger protein 786 protein-coding 6785 chr12 27591778 27591910 + 0 NA intron (NM_001198915, intron 2 of 26) intron (NM_001198915, intron 2 of 26) 67732 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 9816 chr15 31024441 31024545 + 0 NA intron (NM_001252020, intron 26 of 26) intron (NM_001252020, intron 26 of 26) -32889 NM_017762 54893 Hs.30141 NM_017762 ENSG00000166912 MTMR10 - myotubularin related protein 10 protein-coding 9500 chr14 87433695 87433799 + 0 NA Intergenic Intergenic 527969 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 15383 chr2 38462221 38462317 + 0 NA intron (NR_110259, intron 4 of 4) intron (NR_110259, intron 4 of 4) 53471 NR_110259 101929596 Hs.537341 NR_110259 LOC101929596 - uncharacterized LOC101929596 ncRNA 27710 chr8 38660165 38660269 + 0 NA Intergenic Intergenic -58960 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 15231 chr2 27356870 27356988 + 0 NA promoter-TSS (NM_001318909) promoter-TSS (NM_001318909) 105 NM_001035521 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 162 chr1 10980192 10980335 + 0 NA intron (NM_001170754, intron 1 of 12) intron (NM_001170754, intron 1 of 12) 1774 NM_001170754 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 25323 chr6 149941898 149942002 + 0 NA promoter-TSS (NM_025217) promoter-TSS (NM_025217) 12 NM_025217 80328 Hs.656778 NM_025217 ENSG00000131015 ULBP2 ALCAN-alpha|N2DL2|NKG2DL2|RAET1H UL16 binding protein 2 protein-coding 880 chr1 52921594 52921698 + 0 NA exon (NM_001198961, exon 1 of 10) exon (NM_001198961, exon 1 of 10) 128 NM_018281 55268 Hs.476319 NM_018281 ENSG00000121310 ECHDC2 - enoyl-CoA hydratase domain containing 2 protein-coding 433 chr1 26849398 26849502 + 0 NA intron (NM_032283, intron 3 of 7) intron (NM_032283, intron 3 of 7) -13692 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 27857 chr8 54744188 54744287 + 0 NA Intergenic LTR55|LTR|ERVL? 128170 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1, axonemal microtubule associated protein-coding 13958 chr19 4713682 4713766 + 0 NA intron (NM_139159, intron 4 of 21) intron (NM_139159, intron 4 of 21) 10119 NM_139159 91039 Hs.515081 NM_139159 ENSG00000142002 DPP9 DP9|DPLP9|DPRP-2|DPRP2 dipeptidyl peptidase 9 protein-coding 5396 chr11 62881602 62881749 + 0 NA promoter-TSS (NR_037193) promoter-TSS (NR_037193) -24 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 19985 chr3 119323017 119323168 + 0 NA promoter-TSS (NR_046748) promoter-TSS (NR_046748) -332 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 4530 chr10 122127429 122127533 + 0 NA intron (NM_001291879, intron 1 of 16) intron (NM_001291879, intron 1 of 16) 14442 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 24753 chr6 63537779 63537888 + 0 NA Intergenic Intergenic -34179 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 9805 chr15 29822383 29822517 + 0 NA promoter-TSS (NM_001301026).2 promoter-TSS (NM_001301026).2 53 NM_003257 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 3022 chr1 235920259 235920361 + 0 NA Intergenic Intergenic -36602 NM_001301365 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 27337 chr8 6903358 6903462 + 0 NA Intergenic Intergenic 22666 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin alpha 6 protein-coding 4297 chr10 104121716 104121792 + 0 NA promoter-TSS (NM_145247) promoter-TSS (NM_145247) -304 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 7221 chr12 64404248 64404365 + 0 NA promoter-TSS (NM_007235) promoter-TSS (NM_007235) -67 NM_007235 11260 Hs.85951 NM_007235 ENSG00000184575 XPOT XPO3 exportin for tRNA protein-coding 28897 chr9 4984758 4984862 + 0 NA promoter-TSS (NM_004972) promoter-TSS (NM_004972) -276 NM_001322194 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 4305 chr10 104329227 104329369 + 0 NA promoter-TSS (NM_001272012) promoter-TSS (NM_001272012) -306 NM_001272012 85450 Hs.523252 NM_033397 ENSG00000148841 ITPRIP DANGER|KIAA1754|bA127L20|bA127L20.2 inositol 1,4,5-trisphosphate receptor interacting protein protein-coding 26383 chr7 70833847 70833951 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -298638 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 14026 chr19 7894981 7895085 + 0 NA intron (NM_001268284, intron 2 of 3) intron (NM_001268284, intron 2 of 3) 6528 NM_025061 80131 Hs.501511 NM_025061 ENSG00000171017 LRRC8E - leucine rich repeat containing 8 family member E protein-coding 3128 chr1 245118875 245118979 + 0 NA intron (NR_026587, intron 5 of 5) intron (NR_026587, intron 5 of 5) -36058 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 7770 chr12 121210145 121210185 + 0 NA exon (NM_002560, exon 1 of 12) exon (NM_002560, exon 1 of 12) 304 NM_002560 5025 Hs.321709 NM_002560 ENSG00000135124 P2RX4 P2X4|P2X4R purinergic receptor P2X 4 protein-coding 19816 chr3 107208247 107208308 + 0 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 32361 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 6979 chr12 49828552 49828692 + 0 NA promoter-TSS (NR_027499) promoter-TSS (NR_027499) 79 NR_027500 100286844 Hs.656019 NR_027499 ENSG00000258057 BCDIN3D-AS1 - BCDIN3D antisense RNA 1 ncRNA 8697 chr14 22537044 22537188 + 0 NA Intergenic Intergenic 52121 NM_001344 1603 Hs.82890 NM_001344 ENSG00000129562 DAD1 OST2 defender against cell death 1 protein-coding 23431 chr5 145946537 145946641 + 0 NA intron (NM_152550, intron 2 of 9) intron (NM_152550, intron 2 of 9) 10026 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 2892 chr1 228165979 228166123 + 0 NA promoter-TSS (NR_103540) promoter-TSS (NR_103540) 243 NM_001010867 200205 Hs.237017 NM_001010867 ENSG00000181873 IBA57 C1orf69|MMDS3|SPG74 IBA57 homolog, iron-sulfur cluster assembly protein-coding 4440 chr10 117609219 117609259 + 0 NA Intergenic L2a|LINE|L2 -64171 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 7911 chr12 132490067 132490171 + 0 NA promoter-TSS (NM_001142641) promoter-TSS (NM_001142641) -452 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin like 1 protein-coding 15578 chr2 55839369 55839416 + 0 NA Intergenic Intergenic 84771 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin like extracellular matrix protein 1 protein-coding 19579 chr3 57068659 57068763 + 0 NA intron (NM_181727, intron 1 of 1) intron (NM_181727, intron 1 of 1) 8270 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 1695 chr1 150922743 150922847 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -3544 NM_012432 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated 1 protein-coding 30800 chrX 69109825 69109929 + 0 NA Intergenic Intergenic 55645 NM_145119 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 17217 chr2 227325126 227325265 + 0 NA promoter-TSS (NR_102371) promoter-TSS (NR_102371) -31 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 27068 chr7 135877952 135878074 + 0 NA Intergenic Intergenic 99443 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 668 chr1 38941834 38941938 + 0 NA promoter-TSS (NM_017821) promoter-TSS (NM_017821) -56 NM_017821 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 6086 chr11 112128623 112128701 + 0 NA Intergenic Intergenic 35455 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 21759 chr4 121729023 121729086 + 0 NA Intergenic L2c|LINE|L2 -32062 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 9947 chr15 40894310 40894464 + 0 NA promoter-TSS (NM_020857) promoter-TSS (NM_020857) -43 NM_020857 57617 Hs.23876 NM_020857 ENSG00000104142 VPS18 PEP3 VPS18, CORVET/HOPS core subunit protein-coding 20926 chr3 189937689 189937725 + 0 NA Intergenic Intergenic 107785 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 16279 chr2 127416210 127416269 + 0 NA Intergenic Intergenic -2181 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 27653 chr8 30812763 30812852 + 0 NA promoter-TSS (NM_001009552) promoter-TSS (NM_001009552) 29 NM_001009552 5516 Hs.491440 NM_004156 ENSG00000104695 PPP2CB PP2Abeta|PP2CB protein phosphatase 2 catalytic subunit beta protein-coding 19134 chr3 9396680 9396855 + 0 NA promoter-TSS (NR_132781) promoter-TSS (NR_132781) -144 NR_132781 440944 Hs.598958 NM_001013713 ENSG00000206573 THUMPD3-AS1 SETD5-AS1 THUMPD3 antisense RNA 1 ncRNA 22548 chr5 55535131 55535235 + 0 NA promoter-TSS (NM_176895) promoter-TSS (NM_176895) -105 NM_176895 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 2701 chr1 218025506 218025610 + 0 NA Intergenic Intergenic -17947 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 4601 chr10 127945517 127945663 + 0 NA intron (NM_001323356, intron 1 of 19) intron (NM_001323356, intron 1 of 19) 38529 NM_001316676 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase, receptor type E protein-coding 15504 chr2 47176788 47176950 + 0 NA promoter-TSS (NM_001305624) promoter-TSS (NM_001305624) 67 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 19442 chr3 45178505 45178609 + 0 NA Intergenic Intergenic -32135 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 26722 chr7 101109131 101109292 + 0 NA Intergenic Intergenic -17878 NM_000602 5054 Hs.414795 NM_000602 ENSG00000106366 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin family E member 1 protein-coding 17844 chr20 31604280 31604416 + 0 NA promoter-TSS (NM_181353) promoter-TSS (NM_181353) -935 NM_181353 3397 Hs.504609 NM_002165 ENSG00000125968 ID1 ID|bHLHb24 inhibitor of DNA binding 1, HLH protein protein-coding 8305 chr13 52968181 52968307 + 0 NA Intergenic Intergenic -60497 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 27981 chr8 67381068 67381230 + 0 NA intron (NR_136224, intron 1 of 4) LTR85a|LTR|Gypsy? 37315 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 2309 chr1 197902852 197902952 + 0 NA exon (NM_001024594, exon 1 of 3) exon (NM_001024594, exon 1 of 3) 350 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 4348 chr10 110629913 110630067 + 0 NA Intergenic Intergenic -14407 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 28110 chr8 82206915 82207065 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -364704 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 22681 chr5 69206744 69206848 + 0 NA intron (NM_022909, intron 7 of 8) intron (NM_022909, intron 7 of 8) -10950 NM_033281 92259 Hs.631971 NM_033281 ENSG00000134056 MRPS36 DC47|MRP-S36 mitochondrial ribosomal protein S36 protein-coding 6823 chr12 31206154 31206258 + 0 NA Intergenic Intergenic -118110 NR_026806 79857 Hs.534485 NM_024799 ENSG00000177340 FLJ13224 - uncharacterized LOC79857 ncRNA 25622 chr7 6306596 6306731 + 0 NA Intergenic L1MB3|LINE|L1 -34052 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 4859 chr11 13111016 13111120 + 0 NA Intergenic Intergenic 101645 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 2558 chr1 209383985 209384089 + 0 NA Intergenic Intergenic -44786 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene protein-coding 18560 chr21 42228166 42228324 + 0 NA intron (NM_207174, intron 2 of 14) intron (NM_207174, intron 2 of 14) 8347 NM_207174 9619 Hs.124649 NM_004915 ENSG00000160179 ABCG1 ABC8|WHITE1 ATP binding cassette subfamily G member 1 protein-coding 11998 chr17 5884437 5884585 + 0 NA intron (NR_040000, intron 2 of 3) intron (NR_040000, intron 2 of 3) 112277 NR_040000 339166 Hs.736088 NR_040000 ENSG00000179314 LOC339166 - uncharacterized LOC339166 ncRNA 10253 chr15 63048278 63048308 + 0 NA promoter-TSS (NM_001330344) promoter-TSS (NM_001330344) -26 NM_001330351 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 (alpha) protein-coding 10499 chr15 78299602 78299749 + 0 NA promoter-TSS (NM_001303247) promoter-TSS (NM_001303247) 51 NM_025234 80349 Hs.513055 NM_025234 ENSG00000140395 WDR61 REC14|SKI8 WD repeat domain 61 protein-coding 4851 chr11 12693792 12693896 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 19422 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 5923 chr11 96243333 96243452 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -98046 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 24831 chr6 80004497 80004501 + 0 NA promoter-TSS (NM_003318) promoter-TSS (NM_003318) -106 NM_003318 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 16878 chr2 197435008 197435146 + 0 NA promoter-TSS (NM_001308824) promoter-TSS (NM_001308824) 16 NM_001005526 23451 Hs.632554 NM_012433 ENSG00000115524 SF3B1 Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 splicing factor 3b subunit 1 protein-coding 19235 chr3 19947030 19947104 + 0 NA promoter-TSS (NM_001292048) promoter-TSS (NM_001292048) -13 NM_001292048 5868 Hs.475663 NM_004162 ENSG00000144566 RAB5A RAB5 RAB5A, member RAS oncogene family protein-coding 1085 chr1 67880326 67880375 + 0 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -46878 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 11617 chr16 73735125 73735236 + 0 NA Intergenic L1MB3|LINE|L1 348375 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 13456 chr18 36850677 36850781 + 0 NA intron (NM_020776, intron 4 of 9) MER44B|DNA|TcMar-Tigger -21513 NM_015476 25941 Hs.436636 NM_015476 ENSG00000134779 TPGS2 C18orf10|HMFN0601|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 8168 chr13 41284895 41285026 + 0 NA Intergenic LTR44|LTR|ERV1 -21383 NM_004294 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 26737 chr7 101882973 101883126 + 0 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 65447 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 19587 chr3 57756151 57756346 + 0 NA Intergenic CpG -1008 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 26630 chr7 95608816 95608990 + 0 NA Intergenic Intergenic -12290 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 1403 chr1 100038840 100038872 + 0 NA intron (NM_033055, intron 1 of 11) intron (NM_033055, intron 1 of 11) 623 NM_033055 64645 Hs.124156 NM_033055 ENSG00000156875 MFSD14A HIAT1 major facilitator superfamily domain containing 14A protein-coding 24517 chr6 39229481 39229633 + 0 NA promoter-TSS (NM_003740) promoter-TSS (NM_003740) -82 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 21524 chr4 83284494 83284589 + 0 NA exon (NM_015697, exon 1 of 7) exon (NM_015697, exon 1 of 7) 373 NM_015697 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 21770 chr4 123547280 123547334 + 0 NA Intergenic Intergenic -105478 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 20959 chr3 190709602 190709706 + 0 NA Intergenic Intergenic 153022 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 17224 chr2 227466344 227466517 + 0 NA Intergenic Intergenic -5702 NR_049888 100847081 NR_049888 MIR5703 mir-5703 microRNA 5703 ncRNA 27322 chr8 3199617 3199721 + 0 NA intron (NM_033225, intron 33 of 69) intron (NM_033225, intron 33 of 69) -471218 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 18048 chr20 43657512 43657642 + 0 NA Intergenic CpG -9442 NM_002466 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 1497 chr1 110477205 110477347 + 0 NA Intergenic MIRb|SINE|MIR -3490 NR_003599 643160 Hs.532720 NR_003599 ENSG00000240194 CYMP - chymosin pseudogene pseudo 28128 chr8 85636043 85636071 + 0 NA Intergenic Intergenic 19619 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 497 chr1 29230868 29230999 + 0 NA promoter-TSS (NM_001024732) promoter-TSS (NM_001024732) 25 NM_001024732 51102 Hs.183646 NM_016011 ENSG00000116353 MECR CGI-63|FASN2B|NRBF1 mitochondrial trans-2-enoyl-CoA reductase protein-coding 13399 chr18 31512602 31512750 + 0 NA intron (NM_001943, intron 1 of 14) intron (NM_001943, intron 1 of 14) 14672 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 31144 chrX 150693850 150693990 + 0 NA intron (NM_001306144, intron 1 of 15) CpG 556 NM_001306145 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 29602 chr9 95038387 95038418 + 0 NA intron (NM_001193329, intron 12 of 15) intron (NM_001193329, intron 12 of 15) -26948 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 18555 chr21 41783611 41783615 + 0 NA Intergenic LTR3B|LTR|ERVK -16524 NM_020639 54101 Hs.517310 NM_020639 ENSG00000183421 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor interacting serine/threonine kinase 4 protein-coding 12449 chr17 40054348 40054521 + 0 NA non-coding (NR_052017, exon 1 of 25) non-coding (NR_052017, exon 1 of 25) 202 NR_052017 9862 Hs.462983 NM_014815 ENSG00000008838 MED24 ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100 mediator complex subunit 24 protein-coding 10465 chr15 75451929 75451946 + 0 NA promoter-TSS (NM_015477) promoter-TSS (NM_015477) -191 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 4615 chr10 130025489 130025593 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR -61714 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|O/E-2|OE-2 early B-cell factor 3 protein-coding 22779 chr5 79956444 79956641 + 0 NA intron (NR_131226, intron 2 of 2) intron (NR_131226, intron 2 of 2) 19963 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 169 chr1 11805856 11805960 + 0 NA promoter-TSS (NR_046428) promoter-TSS (NR_046428) -188 NM_001256959 1185 Hs.193043 NM_001286 ENSG00000011021 CLCN6 CLC-6 chloride voltage-gated channel 6 protein-coding 398 chr1 25819897 25820017 + 0 NA promoter-TSS (NM_001099625) promoter-TSS (NM_001099625) 51 NM_001099627 56181 Hs.149305 NM_019557 ENSG00000117640 MTFR1L FAM54B|HYST1888|MST116|MSTP116 mitochondrial fission regulator 1 like protein-coding 29738 chr9 105245181 105245318 + 0 NA intron (NM_001286730, intron 1 of 15) CpG 636 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 17195 chr2 225737775 225737879 + 0 NA Intergenic Intergenic 336941 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 7325 chr12 80269078 80269201 + 0 NA intron (NM_173591, intron 21 of 57) MamRep137|DNA|TcMar-Tigger 59686 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 16775 chr2 183038477 183038520 + 0 NA 5' UTR (NM_205842, exon 1 of 32) 5' UTR (NM_205842, exon 1 of 32) 360 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 3934 chr10 75410610 75410714 + 0 NA non-coding (NR_110304, exon 3 of 3) non-coding (NR_110304, exon 3 of 3) 1505 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 14418 chr19 38559548 38559652 + 0 NA intron (NM_001042723, intron 88 of 104) intron (NM_001042723, intron 88 of 104) -36747 NR_134907 105372397 Hs.570011 NR_134907 ENSG00000267291 LOC105372397 - uncharacterized LOC105372397 ncRNA 7358 chr12 85821743 85821847 + 0 NA intron (NM_005447, intron 1 of 1) intron (NM_005447, intron 1 of 1) 14745 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 16752 chr2 180644869 180644973 + 0 NA Intergenic LTR52|LTR|ERVL -47183 NR_104322 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 28160 chr8 88959852 88959956 + 0 NA Intergenic Intergenic -632416 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 17542 chr20 6141103 6141207 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -17611 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 14956 chr2 9142725 9142875 + 0 NA Intergenic Intergenic -63965 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 27317 chr8 1763777 1763911 + 0 NA promoter-TSS (NR_134302).2 promoter-TSS (NR_134302).2 140 NM_018941 2055 Hs.127675 NM_018941 ENSG00000182372 CLN8 C8orf61|EPMR ceroid-lipofuscinosis, neuronal 8 protein-coding 19947 chr3 116059849 116059958 + 0 NA intron (NM_002338, intron 2 of 6) intron (NM_002338, intron 2 of 6) -300121 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 19740 chr3 98732699 98732803 + 0 NA promoter-TSS (NM_001323365) promoter-TSS (NM_001323365) 47 NM_001323364 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 17267 chr2 231482829 231482976 + 0 NA Intergenic Intergenic -18408 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23 nucleolin protein-coding 30020 chr9 120776003 120776147 + 0 NA intron (NM_012164, intron 5 of 7) intron (NM_012164, intron 5 of 7) 17387 NM_012164 26190 Hs.494985 NM_012164 ENSG00000119402 FBXW2 FBW2|Fwd2|Md6 F-box and WD repeat domain containing 2 protein-coding 4119 chr10 95308791 95308914 + 0 NA Intergenic Intergenic -17704 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 28549 chr8 122489726 122489905 + 0 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 78829 NR_131202 105375734 Hs.628341 NR_131202 LOC105375734 - uncharacterized LOC105375734 ncRNA 25744 chr7 16804940 16805068 + 0 NA 5' UTR (NM_006408, exon 1 of 8) 5' UTR (NM_006408, exon 1 of 8) 110 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 9775 chr14_GL000225v1_random 120572 120724 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 22028 chr4 174522441 174522467 + 0 NA 5' UTR (NM_001256306, exon 1 of 5) 5' UTR (NM_001256306, exon 1 of 5) 439 NM_001256301 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 hydroxyprostaglandin dehydrogenase 15-(NAD) protein-coding 1808 chr1 155193732 155193836 + 0 NA promoter-TSS (NM_001204286) promoter-TSS (NM_001204286) -869 NM_001204292 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 24420 chr6 33590239 33590278 + 0 NA intron (NR_027908, intron 1 of 1) intron (NR_027908, intron 1 of 1) 3080 NR_027908 401253 Hs.520075 NM_207497 ENSG00000197251 LINC00336 C6orf227|NCRNA00336 long intergenic non-protein coding RNA 336 ncRNA 8918 chr14 39170394 39170498 + 0 NA promoter-TSS (NM_001079537) promoter-TSS (NM_001079537) -16 NM_001079537 122553 Hs.13303 NM_177452 ENSG00000182400 TRAPPC6B TPC6 trafficking protein particle complex 6B protein-coding 12721 chr17 55421924 55422078 + 0 NA promoter-TSS (NM_012329) promoter-TSS (NM_012329) -21 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 17856 chr20 31880108 31880251 + 0 NA intron (NM_001008409, intron 2 of 14) intron (NM_001008409, intron 2 of 14) -9435 NM_080611 128853 Hs.434108 NM_080611 ENSG00000149599 DUSP15 C20orf57|VHY dual specificity phosphatase 15 protein-coding 16599 chr2 165793149 165793288 + 0 NA intron (NM_004482, intron 1 of 10) intron (NM_004482, intron 1 of 10) 1075 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 601 chr1 34783733 34783837 + 0 NA intron (NM_001005752, intron 1 of 1) intron (NM_001005752, intron 1 of 1) 1475 NM_001005752 2707 Hs.522561 NM_024009 ENSG00000188910 GJB3 CX31|DFNA2|DFNA2B|EKV gap junction protein beta 3 protein-coding 1739 chr1 152182972 152183042 + 0 NA Intergenic Intergenic -23779 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 22080 chr4 183506313 183506417 + 0 NA intron (NM_001291959, intron 1 of 1) CpG 283 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 9929 chr15 40440846 40440947 + 0 NA promoter-TSS (NM_014952) promoter-TSS (NM_014952) -255 NM_014952 22893 Hs.22109 NM_014952 ENSG00000140320 BAHD1 - bromo adjacent homology domain containing 1 protein-coding 10545 chr15 80849430 80849534 + 0 NA intron (NM_018689, intron 1 of 28) L2|LINE|L2 -7409 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 9524 chr14 89040777 89040881 + 0 NA Intergenic Intergenic 216676 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 19879 chr3 111978892 111979059 + 0 NA promoter-TSS (NM_001272069) promoter-TSS (NM_001272069) 99 NR_073570 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 24382 chr6 31827433 31827537 + 0 NA promoter-TSS (NM_005346).5 promoter-TSS (NM_005346).5 -250 NM_005346 3304 Hs.274402 NM_005346 ENSG00000204388 HSPA1B HSP70-1B|HSP70-2|HSP70.2 heat shock protein family A (Hsp70) member 1B protein-coding 10587 chr15 83559446 83559550 + 0 NA intron (NM_001324186, intron 3 of 9) intron (NM_001324186, intron 3 of 9) 68884 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 504 chr1 29974518 29974606 + 0 NA Intergenic MIRb|SINE|MIR 63050 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 22031 chr4 174829266 174829360 + 0 NA promoter-TSS (NM_001042543) promoter-TSS (NM_001042543) 2 NM_001042543 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 18751 chr22 28883507 28883611 + 0 NA promoter-TSS (NM_001206998) promoter-TSS (NM_001206998) -208 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 3177 chr10 1289807 1289953 + 0 NA intron (NM_018702, intron 3 of 9) intron (NM_018702, intron 3 of 9) 130112 NR_015376 399706 Hs.721191 NM_001010910 ENSG00000229205 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 7190 chr12 59973034 59973134 + 0 NA Intergenic LTR16|LTR|ERVL 283747 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 26370 chr7 69871649 69871753 + 0 NA intron (NM_015570, intron 1 of 18) MER44B|DNA|TcMar-Tigger 272782 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 16883 chr2 197515863 197516018 + 0 NA promoter-TSS (NM_001100819) promoter-TSS (NM_001100819) -103 NM_001100819 25843 Hs.633165 NM_015387 ENSG00000115540 MOB4 2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 17782 chr20 23361959 23362110 + 0 NA promoter-TSS (NM_022482) promoter-TSS (NM_022482) -98 NM_001317012 64412 Hs.709462 NM_022482 ENSG00000125812 GZF1 ZBTB23|ZNF336 GDNF inducible zinc finger protein 1 protein-coding 18494 chr21 33801739 33801946 + 0 NA intron (NM_001331010, intron 19 of 38) intron (NM_001331010, intron 19 of 38) 114012 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5O ATPO|HMC08D05|OSCP ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding 15406 chr2 39996901 39996949 + 0 NA intron (NR_038441, intron 2 of 4) MER44B|DNA|TcMar-Tigger 79291 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 30371 chr9 136886312 136886468 + 0 NA promoter-TSS (NR_039697) promoter-TSS (NR_039697) -123 NM_021138 7186 Hs.522506 NM_021138 ENSG00000127191 TRAF2 MGC:45012|TRAP|TRAP3 TNF receptor associated factor 2 protein-coding 11017 chr16 11303428 11303572 + 0 NA Intergenic MER50|LTR|ERV1 3027 NR_031678 100313773 NR_031678 ENSG00000221801 MIR548H2 MIR548H-2|MIRN548H2 microRNA 548h-2 ncRNA 28261 chr8 97835389 97835549 + 0 NA intron (NM_018407, intron 6 of 6) MER119|DNA|hAT-Charlie -33552 NM_030583 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 26341 chr7 65982223 65982286 + 0 NA promoter-TSS (NM_001284290) promoter-TSS (NM_001284290) 60 NM_001284290 2990 Hs.255230 NM_000181 ENSG00000169919 GUSB BG|MPS7 glucuronidase beta protein-coding 23541 chr5 151447490 151447692 + 0 NA promoter-TSS (NM_001308150) promoter-TSS (NM_001308150) -5 NM_001308150 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 18291 chr20 56468479 56468597 + 0 NA promoter-TSS (NM_001283035) promoter-TSS (NM_001283035) -47 NM_001283036 51507 Hs.517134 NM_016407 ENSG00000022277 RTFDC1 C20orf43|CDAO5|HSPC164|SHUJUN-3 replication termination factor 2 domain containing 1 protein-coding 8212 chr13 45220093 45220281 + 0 NA intron (NM_004128, intron 5 of 7) MamRTE1|LINE|RTE-BovB -19147 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 28264 chr8 97869469 97869680 + 0 NA intron (NM_002380, intron 1 of 18) CpG 553 NM_001317748 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 21816 chr4 138276117 138276221 + 0 NA Intergenic Intergenic -33542 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 8005 chr13 26616246 26616350 + 0 NA intron (NM_001291965, intron 2 of 9) L1ME1|LINE|L1 58595 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WAS protein family member 3 protein-coding 13464 chr18 40868215 40868366 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 652307 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 23065 chr5 115841534 115841638 + 0 NA promoter-TSS (NM_001318093) promoter-TSS (NM_001318093) -20 NM_001318093 1176 Hs.406191 NM_001284 ENSG00000177879 AP3S1 CLAPS3|Sigma3A adaptor related protein complex 3 sigma 1 subunit protein-coding 2506 chr1 206590145 206590277 + 0 NA TTS (NM_182663) TTS (NM_182663) 22340 NM_006893 1939 Hs.497581 NM_006893 ENSG00000143486 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 19472 chr3 48557082 48557200 + 0 NA promoter-TSS (NM_001317138) promoter-TSS (NM_001317138) -218 NM_001317135 5210 Hs.476217 NM_004567 ENSG00000114268 PFKFB4 - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 protein-coding 12626 chr17 48585501 48585612 + 0 NA Intergenic Intergenic -2934 NM_001330322 3213 Hs.654560 NM_002146 ENSG00000120093 HOXB3 HOX2|HOX2G|Hox-2.7 homeobox B3 protein-coding 6461 chr12 3311093 3311197 + 0 NA Intergenic Intergenic -70204 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 11801 chr16 86566748 86566763 + 0 NA promoter-TSS (NM_005251) promoter-TSS (NM_005251) -496 NM_005251 2303 Hs.436448 NM_005251 ENSG00000176692 FOXC2 FKHL14|LD|MFH-1|MFH1 forkhead box C2 protein-coding 15354 chr2 36966602 36966794 + 0 NA promoter-TSS (NM_003162) promoter-TSS (NM_003162) -226 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 16994 chr2 207505855 207505895 + 0 NA Intergenic Intergenic -24017 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 13881 chr19 2028747 2028912 + 0 NA Intergenic Intergenic -13126 NM_017797 55643 Hs.465543 NM_017797 ENSG00000133243 BTBD2 - BTB domain containing 2 protein-coding 13541 chr18 48976097 48976148 + 0 NA Intergenic CpG -25411 NM_001190821 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 17573 chr20 10307103 10307233 + 0 NA 3' UTR (NM_001322903, exon 9 of 9) 3' UTR (NM_001322903, exon 9 of 9) -87662 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 2401 chr1 202058261 202058409 + 0 NA Intergenic AluJb|SINE|Alu 47773 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 10861 chr16 1610610 1610727 + 0 NA TTS (NR_135176) TTS (NR_135176) 1440 NM_014714 9742 Hs.389438 NM_014714 ENSG00000187535 IFT140 MZSDS|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114 intraflagellar transport 140 protein-coding 22601 chr5 60844225 60844393 + 0 NA promoter-TSS (NM_001104558) promoter-TSS (NM_001104558) -35 NM_001297618 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 2053 chr1 169676093 169676106 + 0 NA Intergenic Intergenic 32757 NR_029467 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 6779 chr12 27331450 27331547 + 0 NA Intergenic Intergenic -1356 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 9756 chr14 105490912 105490930 + 0 NA promoter-TSS (NM_001134875) promoter-TSS (NM_001134875) -328 NM_001134875 283643 Hs.720306 NM_173608 ENSG00000185347 C14orf80 - chromosome 14 open reading frame 80 protein-coding 11032 chr16 12613761 12613865 + 0 NA Intergenic LTR10A|LTR|ERV1 -106508 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 28253 chr8 96645194 96645309 + 0 NA promoter-TSS (NM_016134) promoter-TSS (NM_016134) 24 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 26102 chr7 40299283 40299387 + 0 NA intron (NM_024728, intron 8 of 14) MER102c|DNA|hAT-Charlie 164359 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 25240 chr6 141552718 141552822 + 0 NA Intergenic L1MB7|LINE|L1 536029 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 23094 chr5 120413855 120413959 + 0 NA Intergenic L1PA15|LINE|L1 -50371 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 9599 chr14 94342415 94342567 + 0 NA Intergenic Intergenic -19140 NM_001756 866 Hs.532635 NM_001756 ENSG00000170099 SERPINA6 CBG serpin family A member 6 protein-coding 30204 chr9 128874567 128874723 + 0 NA intron (NM_001287390, intron 1 of 14) Tigger6a|DNA|TcMar-Tigger 7430 NM_001287390 883 Hs.495250 NM_004059 ENSG00000171097 KYAT1 CCBL1|GTK|KAT1|KATI kynurenine aminotransferase 1 protein-coding 17975 chr20 38033390 38033543 + 0 NA promoter-TSS (NM_001303457) promoter-TSS (NM_001303457) 2 NM_014657 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 27061 chr7 135335793 135335924 + 0 NA Intergenic Intergenic 103879 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 21683 chr4 108467248 108467352 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -89933 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 19106 chr3 5194856 5194978 + 0 NA intron (NM_014674, intron 1 of 11) intron (NM_014674, intron 1 of 11) 7243 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 7043 chr12 52926419 52926483 + 0 NA promoter-TSS (NM_001256282) promoter-TSS (NM_001256282) 18 NM_001256282 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 15804 chr2 73234205 73234309 + 0 NA promoter-TSS (NM_001009570) promoter-TSS (NM_001009570) 21 NM_006429 10574 Hs.368149 NM_006429 ENSG00000135624 CCT7 CCTETA|CCTH|NIP7-1|TCP1ETA chaperonin containing TCP1 subunit 7 protein-coding 15096 chr2 17518415 17518544 + 0 NA promoter-TSS (NM_001099218) promoter-TSS (NM_001099218) -40 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 23730 chr5 172765287 172765428 + 0 NA Intergenic Intergenic 5843 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 172 chr1 11934501 11934637 + 0 NA promoter-TSS (NM_000302) promoter-TSS (NM_000302) -98 NM_000302 5351 Hs.75093 NM_000302 ENSG00000083444 PLOD1 EDS6|LH|LH1|LLH|PLOD procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 protein-coding 29920 chr9 114017008 114017040 + 0 NA intron (NM_133374, intron 10 of 13) intron (NM_133374, intron 10 of 13) 61448 NM_001633 259 Hs.436911 NM_001633 ENSG00000106927 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 9735 chr14 103921625 103921729 + 0 NA promoter-TSS (NM_001127393) promoter-TSS (NM_001127393) -111 NM_004894 9556 Hs.109052 NM_004894 ENSG00000156411 C14orf2 MP68|PLPM chromosome 14 open reading frame 2 protein-coding 9690 chr14 101964463 101964600 + 0 NA promoter-TSS (NM_001376) promoter-TSS (NM_001376) 3 NM_001376 1778 Hs.614080 NM_001376 ENSG00000197102 DYNC1H1 CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein cytoplasmic 1 heavy chain 1 protein-coding 25587 chr7 4753955 4754107 + 0 NA intron (NM_001037165, intron 2 of 8) intron (NM_001037165, intron 2 of 8) -21600 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 zeta 1 subunit protein-coding 25101 chr6 125046129 125046243 + 0 NA intron (NR_104440, intron 3 of 6) L2c|LINE|L2 62822 NR_104440 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 4252 chr10 102422771 102422875 + 0 NA TTS (NM_024040) TTS (NM_024040) -2889 NM_001270965 5662 Hs.154658 NM_002779 ENSG00000059915 PSD EFA6|EFA6A|PSD1|TYL pleckstrin and Sec7 domain containing protein-coding 10945 chr16 4351305 4351422 + 0 NA promoter-TSS (NM_016069) promoter-TSS (NM_016069) 9 NM_016069 51025 Hs.730693 NM_016069 ENSG00000217930 PAM16 CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16 presequence translocase associated motor 16 homolog protein-coding 27478 chr8 19291616 19291766 + 0 NA Intergenic Intergenic -21879 NM_022071 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 21811 chr4 137510990 137511156 + 0 NA Intergenic Intergenic 21425 NM_019035 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 26953 chr7 124992897 124993048 + 0 NA intron (NR_125719, intron 2 of 7) intron (NR_125719, intron 2 of 7) -62989 NR_003102 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 10152 chr15 56246173 56246326 + 0 NA Intergenic Intergenic -2964 NM_022841 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 4999 chr11 20111381 20111485 + 0 NA intron (NM_001111019, intron 26 of 27) intron (NM_001111019, intron 26 of 27) 48891 NM_001029865 120237 Hs.558604 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 26858 chr7 115341098 115341202 + 0 NA Intergenic L2|LINE|L2 -109795 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 28952 chr9 18238367 18238471 + 0 NA Intergenic MIRb|SINE|MIR -235662 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 23152 chr5 127517590 127517748 + 0 NA promoter-TSS (NM_001286808) promoter-TSS (NM_001286808) 60 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 24023 chr6 10463668 10463822 + 0 NA Intergenic L2a|LINE|L2 24028 NR_049872 100846998 NR_049872 ENSG00000263705 MIR5689 - microRNA 5689 ncRNA 4571 chr10 125123820 125123947 + 0 NA intron (NM_001083914, intron 1 of 10) intron (NM_001083914, intron 1 of 10) 35235 NM_001290215 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 12708 chr17 52145739 52145759 + 0 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 13023 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 26026 chr7 33987400 33987552 + 0 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 82565 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 7737 chr12 119940956 119941060 + 0 NA Intergenic Intergenic -48836 NM_207311 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 12885 chr17 67366510 67366534 + 0 NA 5' UTR (NM_001316341, exon 1 of 13) 5' UTR (NM_001316341, exon 1 of 13) 105 NM_174871 5718 Hs.4295 NM_002816 ENSG00000197170 PSMD12 Rpn5|p55 proteasome 26S subunit, non-ATPase 12 protein-coding 25377 chr6 154733337 154733465 + 0 NA promoter-TSS (NM_014892) promoter-TSS (NM_014892) 23 NM_014892 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 25039 chr6 116011727 116011831 + 0 NA intron (NM_002031, intron 1 of 7) intron (NM_002031, intron 1 of 7) -26952 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 7956 chr13 21657680 21657784 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -13344 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 18074 chr20 44729008 44729157 + 0 NA intron (NR_132377, intron 3 of 4) LTR33A|LTR|ERVL 14238 NM_001323369 8839 Hs.592145 NM_003881 ENSG00000064205 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding 17660 chr20 14879047 14879071 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) 50459 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 2248 chr1 186928132 186928134 + 0 NA intron (NM_024420, intron 7 of 17) intron (NM_024420, intron 7 of 17) 99233 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 12523 chr17 42577770 42577879 + 0 NA promoter-TSS (NM_001256014) promoter-TSS (NM_001256014) 7 NM_013290 29893 Hs.383019 NM_013290 ENSG00000131470 PSMC3IP GT198|HOP2|HUMGT198A|ODG3|TBPIP PSMC3 interacting protein protein-coding 22831 chr5 84688710 84688810 + 0 NA Intergenic LOR1b|LTR|ERV1 -303893 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 10242 chr15 62444550 62444654 + 0 NA Intergenic Intergenic 101573 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 20356 chr3 148943653 148943796 + 0 NA Intergenic Intergenic -47684 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 21465 chr4 76148384 76148547 + 0 NA promoter-TSS (NM_001278603) promoter-TSS (NM_001278603) 50 NR_103780 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 21944 chr4 158171231 158171414 + 0 NA exon (NM_016613, exon 2 of 5) exon (NM_016613, exon 2 of 5) 1244 NM_016613 51313 Hs.567498 NM_016613 ENSG00000164125 FAM198B AD021|AD036|C4orf18|ENED family with sequence similarity 198 member B protein-coding 9642 chr14 98501493 98501597 + 0 NA Intergenic Intergenic -210068 NM_182560 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 11024 chr16 11668347 11668361 + 0 NA promoter-TSS (NM_003498) promoter-TSS (NM_003498) -79 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 15763 chr2 70258024 70258057 + 0 NA promoter-TSS (NM_016297) promoter-TSS (NM_016297) -59 NM_016297 51449 Hs.567502 NM_016297 ENSG00000116005 PCYOX1 PCL1 prenylcysteine oxidase 1 protein-coding 5306 chr11 59171592 59171697 + 0 NA promoter-TSS (NM_015177) promoter-TSS (NM_015177) 214 NM_001300727 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 16111 chr2 109699048 109699112 + 0 NA Intergenic L1MEc|LINE|L1 84746 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 30235 chr9 129626418 129626440 + 0 NA promoter-TSS (NM_001286799) promoter-TSS (NM_001286799) -15 NM_001286799 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 23501 chr5 149828619 149828770 + 0 NA intron (NM_001172699, intron 3 of 10) L2a|LINE|L2 56754 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 21839 chr4 140595105 140595209 + 0 NA Intergenic L1PA15-16|LINE|L1 -26352 NM_021833 7350 Hs.249211 NM_021833 ENSG00000109424 UCP1 SLC25A7|UCP uncoupling protein 1 protein-coding 216 chr1 15800271 15800284 + 0 NA Intergenic Intergenic 7422 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 17337 chr2 236770497 236770577 + 0 NA Intergenic Intergenic 200800 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 22434 chr5 40679211 40679229 + 0 NA promoter-TSS (NM_000958) promoter-TSS (NM_000958) -710 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 24320 chr6 30489386 30489522 + 0 NA promoter-TSS (NM_005516).2 promoter-TSS (NM_005516).2 48 NM_005516 3133 Hs.650174 NM_005516 ENSG00000204592 HLA-E HLA-6.2|QA1 major histocompatibility complex, class I, E protein-coding 7660 chr12 111397202 111397242 + 0 NA Intergenic CpG -8726 NM_005475 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 3600 chr10 41896838 41896989 + 0 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 471132 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 10523 chr15 79874379 79874450 + 0 NA intron (NR_037654, intron 2 of 2) L1M4|LINE|L1 22583 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268 methenyltetrahydrofolate synthetase protein-coding 11889 chr17 1115193 1115342 + 0 NA intron (NM_001322840, intron 2 of 22).2 intron (NM_001322840, intron 2 of 22).2 -6167 NM_001092 29 Hs.159306 NM_001092 ENSG00000159842 ABR MDB active BCR-related protein-coding 21428 chr4 70688220 70688418 + 0 NA promoter-TSS (NM_020368) promoter-TSS (NM_020368) -160 NM_020368 57050 Hs.322901 NM_020368 ENSG00000132467 UTP3 CRL1|CRLZ1|SAS10 UTP3, small subunit processome component homolog (S. cerevisiae) protein-coding 12990 chr17 75035159 75035263 + 0 NA intron (NR_110835, intron 2 of 7) intron (NR_110835, intron 2 of 7) 2644 NR_110835 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 18410 chr20 63980955 63981059 + 0 NA promoter-TSS (NM_012469) promoter-TSS (NM_012469) -71 NM_012469 24148 Hs.31334 NM_012469 ENSG00000101161 PRPF6 ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6 pre-mRNA processing factor 6 protein-coding 2766 chr1 222167307 222167400 + 0 NA Intergenic Intergenic -326687 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 5326 chr11 60193807 60193911 + 0 NA Intergenic Intergenic -9193 NM_152852 64231 Hs.523702 NM_022349 ENSG00000110077 MS4A6A 4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090 membrane spanning 4-domains A6A protein-coding 3661 chr10 48655568 48655672 + 0 NA non-coding (NR_045675, exon 1 of 11) non-coding (NR_045675, exon 1 of 11) 645 NM_001347738 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 7135 chr12 56338668 56338772 + 0 NA promoter-TSS (NM_016584) promoter-TSS (NM_016584) -159 NM_016584 51561 Hs.98309 NM_016584 ENSG00000110944 IL23A IL-23|IL-23A|IL23P19|P19|SGRF interleukin 23 subunit alpha protein-coding 28145 chr8 86514373 86514564 + 0 NA promoter-TSS (NM_001317807) promoter-TSS (NM_001317807) 41 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 1794 chr1 154813592 154813746 + 0 NA intron (NM_002249, intron 2 of 7) intron (NM_002249, intron 2 of 7) 46193 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 24327 chr6 30591184 30591297 + 0 NA 3' UTR (NM_001025091, exon 25 of 25) 3' UTR (NM_001025091, exon 25 of 25) 6908 NR_030615 100126314 NR_030615 ENSG00000216101 MIR877 MIRN877|hsa-mir-877|miRNA877|mir-877 microRNA 877 ncRNA 29189 chr9 71685494 71685598 + 0 NA intron (NM_013390, intron 23 of 23) intron (NM_013390, intron 23 of 23) 83338 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 20783 chr3 182644844 182644959 + 0 NA Intergenic Intergenic -137777 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 11641 chr16 75148342 75148482 + 0 NA promoter-TSS (NM_153688) promoter-TSS (NM_153688) -29 NM_001318474 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 7653 chr12 110578377 110578508 + 0 NA intron (NR_138550, intron 1 of 4) intron (NR_138550, intron 1 of 4) 4817 NM_139283 160760 Hs.13854 NM_139283 ENSG00000196850 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog protein-coding 17641 chr20 13336366 13336470 + 0 NA Intergenic MER45C|DNA|hAT-Tip100 -96731 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 3191 chr10 3486479 3486597 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 167843 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 11834 chr16 88686459 88686563 + 0 NA promoter-TSS (NM_178310) promoter-TSS (NM_178310) -37 NM_178310 333929 Hs.673548 NM_178310 ENSG00000185669 SNAI3 SMUC|SNAIL3|ZNF293|Zfp293 snail family transcriptional repressor 3 protein-coding 26780 chr7 106058605 106058732 + 0 NA Intergenic Intergenic 53677 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 9530 chr14 89417122 89417256 + 0 NA promoter-TSS (NR_036500) promoter-TSS (NR_036500) -79 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 7034 chr12 52672386 52672528 + 0 NA Intergenic Intergenic 7950 NM_006121 3848 Hs.80828 NM_006121 ENSG00000167768 KRT1 CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK keratin 1 protein-coding 27089 chr7 139036039 139036089 + 0 NA promoter-TSS (NM_080660) promoter-TSS (NM_080660) -35 NM_080660 92092 Hs.512833 NM_080660 ENSG00000146858 ZC3HAV1L C7orf39 zinc finger CCCH-type containing, antiviral 1 like protein-coding 29176 chr9 71249890 71249994 + 0 NA Intergenic Intergenic -128344 NM_001007471 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 17061 chr2 214411012 214411116 + 0 NA promoter-TSS (NM_001345929) promoter-TSS (NM_001345929) -504 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing protein 2-like protein-coding 9202 chr14 64569211 64569315 + 0 NA intron (NM_172365, intron 7 of 11) intron (NM_172365, intron 7 of 11) 19361 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 13770 chr18 73680105 73680207 + 0 NA Intergenic Intergenic 355215 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LOC100505817 - uncharacterized LOC100505817 ncRNA 27010 chr7 130868235 130868339 + 0 NA Intergenic Intergenic 8523 NR_029503 407021 NR_029503 ENSG00000226380 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 123 chr1 8878776 8878880 + 0 NA promoter-TSS (NR_038351) promoter-TSS (NR_038351) -7 NR_038351 100505975 Hs.429843 NR_038351 ENSG00000230679 ENO1-AS1 - ENO1 antisense RNA 1 ncRNA 304 chr1 20476470 20476523 + 0 NA Intergenic Intergenic 9739 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 25904 chr7 26156540 26156644 + 0 NA intron (NM_004289, intron 1 of 3) intron (NM_004289, intron 1 of 3) 4365 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 17764 chr20 22792034 22792122 + 0 NA Intergenic Intergenic -184561 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 13853 chr19 1103975 1104046 + 0 NA promoter-TSS (NM_002085) promoter-TSS (NM_002085) 84 NM_002085 2879 Hs.433951 NM_002085 ENSG00000167468 GPX4 GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx glutathione peroxidase 4 protein-coding 5828 chr11 88709663 88709805 + 0 NA intron (NM_000842, intron 3 of 8) intron (NM_000842, intron 3 of 8) 205158 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 1631 chr1 145859008 145859112 + 0 NA promoter-TSS (NM_006099) promoter-TSS (NM_006099) 21 NM_006099 10401 Hs.435761 NM_006099 ENSG00000131788 PIAS3 ZMIZ5 protein inhibitor of activated STAT 3 protein-coding 25370 chr6 154382780 154382884 + 0 NA Intergenic Intergenic -26066 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 2294 chr1 196400918 196401055 + 0 NA intron (NM_198503, intron 12 of 27) L1MC2|LINE|L1 181495 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 21059 chr3 196712321 196712351 + 0 NA promoter-TSS (NM_032898) promoter-TSS (NM_032898) -38 NM_017861 54965 Hs.223296 NM_017861 ENSG00000163964 PIGX PIG-X phosphatidylinositol glycan anchor biosynthesis class X protein-coding 7679 chr12 113215179 113215192 + 0 NA intron (NM_001330452, intron 1 of 4) MIRb|SINE|MIR 5909 NM_001330452 115811 Hs.568276 NM_138451 ENSG00000166578 IQCD 4933433C09Rik|CFAP84|DRC10 IQ motif containing D protein-coding 27048 chr7 134515941 134516042 + 0 NA Intergenic Intergenic -11601 NM_020299 57016 Hs.116724 NM_020299 ENSG00000198074 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1 member B10 protein-coding 11906 chr17 2011671 2011824 + 0 NA intron (NM_178568, intron 1 of 1) intron (NM_178568, intron 1 of 1) -5969 NR_135642 105371485 Hs.655867 NR_135642 ENSG00000228133 LOC105371485 - uncharacterized LOC105371485 ncRNA 19568 chr3 54891638 54891742 + 0 NA intron (NM_018398, intron 25 of 37) intron (NM_018398, intron 25 of 37) 9565 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 30253 chr9 130053620 130053712 + 0 NA promoter-TSS (NM_001287346) promoter-TSS (NM_001287346) -40 NM_001287346 57720 Hs.512461 NM_020960 ENSG00000148358 GPR107 GCDRP|LUSTR1|bA138E2.2 G protein-coupled receptor 107 protein-coding 25069 chr6 118893957 118894122 + 0 NA promoter-TSS (NM_014034) promoter-TSS (NM_014034) -38 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 839 chr1 47437861 47437991 + 0 NA promoter-TSS (NR_126355) promoter-TSS (NR_126355) -609 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 17151 chr2 221794345 221794449 + 0 NA Intergenic L3|LINE|CR1 -220195 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 14537 chr19 44955233 44955337 + 0 NA promoter-TSS (NM_001294) promoter-TSS (NM_001294) 61 NM_001294 1209 Hs.444441 NM_001294 ENSG00000104853 CLPTM1 - CLPTM1, transmembrane protein protein-coding 19279 chr3 27219158 27219262 + 0 NA intron (NM_199347, intron 24 of 24) MER67C|LTR|ERV1 -2687 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 12442 chr17 39927602 39927706 + 0 NA promoter-TSS (NM_001320801) promoter-TSS (NM_001320801) 150 NM_139280 94103 Hs.514151 NM_016471 ENSG00000172057 ORMDL3 - ORMDL sphingolipid biosynthesis regulator 3 protein-coding 5175 chr11 36431965 36432062 + 0 NA intron (NM_001160168, intron 3 of 5) intron (NM_001160168, intron 3 of 5) 31016 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 24836 chr6 80454343 80454357 + 0 NA Intergenic Intergenic 347740 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 30184 chr9 128371275 128371446 + 0 NA promoter-TSS (NM_001135947) promoter-TSS (NM_001135947) 41 NR_049743 81605 Hs.495229 NM_030914 ENSG00000167118 URM1 C9orf74 ubiquitin related modifier 1 protein-coding 29162 chr9 70131493 70131597 + 0 NA exon (NM_153267, exon 7 of 14) exon (NM_153267, exon 7 of 14) 44343 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 28168 chr8 89889595 89889699 + 0 NA Intergenic Intergenic -12221 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 20601 chr3 169030038 169030098 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 116237 NM_001105077 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 24210 chr6 26021469 26021612 + 0 NA promoter-TSS (NM_003538) promoter-TSS (NM_003538) -139 NM_003538 8359 Hs.248178 NM_003538 ENSG00000278637 HIST1H4A H4FA histone cluster 1 H4 family member a protein-coding 30658 chrX 46333747 46333851 + 0 NA Intergenic L1PB1|LINE|L1 -6125 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 29999 chr9 117763443 117763547 + 0 NA Intergenic Intergenic 59320 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 16784 chr2 186326263 186326367 + 0 NA Intergenic MER39|LTR|ERV1 -159843 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 28505 chr8 119112325 119112429 + 0 NA Intergenic Intergenic -43595 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 5278 chr11 57711875 57711972 + 0 NA promoter-TSS (NR_037645) promoter-TSS (NR_037645) 400 NM_001317078 219541 Hs.43619 NM_153450 ENSG00000156603 MED19 DT2P1G7|LCMR1|MED19AS mediator complex subunit 19 protein-coding 22217 chr5 10590724 10590828 + 0 NA intron (NM_001164440, intron 1 of 3) L1MEg|LINE|L1 26453 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 3698 chr10 53894260 53894436 + 0 NA intron (NM_033056, intron 26 of 32) intron (NM_033056, intron 26 of 32) -591882 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 5803 chr11 86719978 86720008 + 0 NA Intergenic Intergenic -47357 NM_001161586 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 8039 chr13 29595774 29595966 + 0 NA promoter-TSS (NM_003045) promoter-TSS (NM_003045) -182 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 5876 chr11 94544223 94544350 + 0 NA exon (NM_002033, exon 1 of 1) exon (NM_002033, exon 1 of 1) 435 NM_002033 2526 Hs.390420 NM_002033 ENSG00000196371 FUT4 CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1 fucosyltransferase 4 protein-coding 26830 chr7 112392067 112392171 + 0 NA Intergenic CpG -31025 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 24238 chr6 26521725 26521829 + 0 NA promoter-TSS (NR_026790) promoter-TSS (NR_026790) 71 NR_026790 493812 Hs.272939 NR_026790 HCG11 CTA-14H9.3|bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 23907 chr6 3418760 3418866 + 0 NA intron (NM_001286456, intron 1 of 3) intron (NM_001286456, intron 1 of 3) 26200 NR_104448 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 18476 chr21 32727903 32727995 + 0 NA promoter-TSS (NM_203446) promoter-TSS (NM_203446) -10 NM_001160306 8867 Hs.473632 NM_003895 ENSG00000159082 SYNJ1 INPP5G|PARK20 synaptojanin 1 protein-coding 14515 chr19 44002884 44002988 + 0 NA promoter-TSS (NR_110727) promoter-TSS (NR_110727) 11 NM_006300 7773 Hs.193583 NM_006300 ENSG00000159882 ZNF230 FDZF2 zinc finger protein 230 protein-coding 2755 chr1 221605688 221605837 + 0 NA Intergenic Intergenic 131138 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 1918 chr1 160813330 160813460 + 0 NA intron (NM_002348, intron 2 of 9) L2c|LINE|L2 17321 NM_001033667 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 14348 chr19 33047529 33047675 + 0 NA intron (NM_033103, intron 1 of 14) intron (NM_033103, intron 1 of 14) 17316 NM_033103 85415 Hs.466435 NM_033103 ENSG00000131941 RHPN2 P76RBE|RHOBP rhophilin Rho GTPase binding protein 2 protein-coding 3237 chr10 5813448 5813584 + 0 NA promoter-TSS (NM_001494) promoter-TSS (NM_001494) 33 NM_001115156 2665 Hs.299055 NM_001494 ENSG00000057608 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 16724 chr2 177553012 177553116 + 0 NA promoter-TSS (NM_152517) promoter-TSS (NM_152517) -268 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 28860 chr8 145002850 145002954 + 0 NA promoter-TSS (NR_023392) promoter-TSS (NR_023392) -3 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 26318 chr7 55887440 55887610 + 0 NA 5' UTR (NM_182633, exon 1 of 7) 5' UTR (NM_182633, exon 1 of 7) 248 NM_182633 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 3164 chr1 248858943 248859097 + 0 NA promoter-TSS (NM_001136036) promoter-TSS (NM_001136036) -94 NM_001136036 55657 Hs.377705 NM_017865 ENSG00000171163 ZNF692 AREBP|Zfp692 zinc finger protein 692 protein-coding 703 chr1 40711529 40711633 + 0 NA intron (NM_001308115, intron 1 of 9) intron (NM_001308115, intron 1 of 9) 2258 NM_001308115 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 5575 chr11 68030528 68030718 + 0 NA promoter-TSS (NM_002496) promoter-TSS (NM_002496) 6 NM_002496 4728 Hs.90443 NM_002496 ENSG00000110717 NDUFS8 CI-23k|CI23KD|TYKY NADH:ubiquinone oxidoreductase core subunit S8 protein-coding 20609 chr3 169349409 169349567 + 0 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -98379 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 9749 chr14 105021009 105021113 + 0 NA promoter-TSS (NM_017955) promoter-TSS (NM_017955) 27 NM_145701 55038 Hs.34045 NM_017955 ENSG00000170779 CDCA4 HEPP|SEI-3/HEPP cell division cycle associated 4 protein-coding 29155 chr9 70044867 70044965 + 0 NA intron (NR_125850, intron 2 of 13) intron (NR_125850, intron 2 of 13) 1335 NM_153267 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 27565 chr8 25195515 25195635 + 0 NA intron (NM_024940, intron 1 of 51) L2b|LINE|L2 10852 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 9551 chr14 90758537 90758641 + 0 NA intron (NM_001320421, intron 3 of 20) CpG 57828 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 25674 chr7 10973649 10973817 + 0 NA promoter-TSS (NM_014660) promoter-TSS (NM_014660) -139 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 11212 chr16 30335145 30335257 + 0 NA non-coding (NR_002453, exon 1 of 13) non-coding (NR_002453, exon 1 of 13) 173 NR_002453 595101 Hs.654650 NR_002453 ENSG00000183604 SMG1P5 - SMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5 pseudo 7228 chr12 64759372 64759569 + 0 NA promoter-TSS (NM_002076) promoter-TSS (NM_002076) -24 NM_002076 2799 Hs.334534 NM_002076 ENSG00000135677 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 29231 chr9 73109328 73109475 + 0 NA Intergenic Intergenic -42330 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 2487 chr1 205579274 205579463 + 0 NA intron (NM_181644, intron 1 of 9) intron (NM_181644, intron 1 of 9) 10384 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 7322 chr12 80001743 80001839 + 0 NA Intergenic Intergenic -66336 NM_001244990 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 15249 chr2 27771619 27771773 + 0 NA promoter-TSS (NM_145330) promoter-TSS (NM_145330) -21 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 16003 chr2 98869506 98869610 + 0 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 66663 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 28516 chr8 119832745 119832870 + 0 NA promoter-TSS (NM_003184) promoter-TSS (NM_003184) 27 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 30469 chrX 8273627 8273737 + 0 NA Intergenic Intergenic -102415 NM_016378 51480 Hs.279737 NM_016378 ENSG00000177504 VCX2 VCX-2r|VCX2R|VCXB variable charge, X-linked 2 protein-coding 1691 chr1 150629618 150629790 + 0 NA promoter-TSS (NM_207045) promoter-TSS (NM_207045) -82 NM_207042 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding 3666 chr10 49550658 49550762 + 0 NA Intergenic LTR8|LTR|ERV1 -11172 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 2003 chr1 166876239 166876389 + 0 NA 5' UTR (NM_053053, exon 1 of 8) 5' UTR (NM_053053, exon 1 of 8) 103 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 5505 chr11 66002268 66002411 + 0 NA promoter-TSS (NM_001242481) promoter-TSS (NM_001242481) -173 NM_001242484 84285 Hs.425178 NM_032325 ENSG00000175376 EIF1AD haponin eukaryotic translation initiation factor 1A domain containing protein-coding 18189 chr20 50510119 50510277 + 0 NA promoter-TSS (NM_002827) promoter-TSS (NM_002827) -123 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 7661 chr12 111599587 111599691 + 0 NA promoter-TSS (NR_132311) promoter-TSS (NR_132311) 34 NM_001310123 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 11002 chr16 10616690 10616779 + 0 NA Intergenic Intergenic -36018 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 11412 chr16 56989461 56989615 + 0 NA promoter-TSS (NM_001330552) promoter-TSS (NM_001330552) 53 NM_001330552 84166 Hs.528836 NM_032206 ENSG00000140853 NLRC5 CLR16.1|NOD27|NOD4 NLR family CARD domain containing 5 protein-coding 1801 chr1 155002116 155002268 + 0 NA promoter-TSS (NM_001252406) promoter-TSS (NM_001252406) -438 NR_049765 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding 13499 chr18 45802862 45803012 + 0 NA Intergenic Intergenic -22643 NM_213602 284266 Hs.287692 NM_213602 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig like lectin 15 protein-coding 24247 chr6 27020237 27020388 + 0 NA promoter-TSS (NR_026776) promoter-TSS (NR_026776) -6 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 25785 chr7 19405157 19405261 + 0 NA Intergenic Intergenic -259788 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 3074 chr1 241591455 241591559 + 0 NA intron (NM_003679, intron 14 of 14) intron (NM_003679, intron 14 of 14) 44423 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like, Rab escort protein 2 protein-coding 29618 chr9 95875441 95875622 + 0 NA promoter-TSS (NM_001010895) promoter-TSS (NM_001010895) -87 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 18512 chr21 36320052 36320215 + 0 NA promoter-TSS (NM_015358) promoter-TSS (NM_015358) -56 NM_001320445 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 12317 chr17 31550014 31550046 + 0 NA Intergenic CpG -9966 NR_029710 406968 NR_029710 ENSG00000207614 MIR193A MIRN193|MIRN193A|mir-193a microRNA 193a ncRNA 15752 chr2 69829507 69829612 + 0 NA promoter-TSS (NM_178439) promoter-TSS (NM_178439) -47 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less, spermatogenesis associated 1 protein-coding 3163 chr1 248858107 248858211 + 0 NA exon (NM_001136036, exon 2 of 12) exon (NM_001136036, exon 2 of 12) 767 NM_001136036 55657 Hs.377705 NM_017865 ENSG00000171163 ZNF692 AREBP|Zfp692 zinc finger protein 692 protein-coding 27025 chr7 131769339 131769468 + 0 NA Intergenic MIRc|SINE|MIR -140817 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 20712 chr3 177590048 177590164 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 148185 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 26787 chr7 106313487 106313640 + 0 NA Intergenic Intergenic -28371 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 20006 chr3 120558913 120559078 + 0 NA Intergenic Intergenic -37286 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 14132 chr19 12140361 12140515 + 0 NA promoter-TSS (NM_001203250) promoter-TSS (NM_001203250) -31 NM_021143 7568 Hs.512823 NM_021143 ENSG00000132010 ZNF20 KOX13 zinc finger protein 20 protein-coding 28019 chr8 73174493 73174597 + 0 NA Intergenic Intergenic -81273 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 7004 chr12 51026310 51026440 + 0 NA promoter-TSS (NR_033422) promoter-TSS (NR_033422) 41 NM_001174128 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 15042 chr2 12697760 12697907 + 0 NA Intergenic Intergenic -19039 NR_027303 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 19756 chr3 100002998 100003132 + 0 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -38667 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 5521 chr11 66480309 66480340 + 0 NA promoter-TSS (NR_120586) promoter-TSS (NR_120586) -75 NR_120586 101928069 Hs.523816 NR_120586 ENSG00000255517 LOC101928069 - uncharacterized LOC101928069 ncRNA 10097 chr15 51864517 51864621 + 0 NA intron (NM_014547, intron 2 of 9) MER74B|LTR|ERVL 34941 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 29611 chr9 95316957 95317009 + 0 NA intron (NM_000136, intron 1 of 14) CpG 271 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC Fanconi anemia complementation group C protein-coding 23684 chr5 168579705 168579845 + 0 NA promoter-TSS (NM_024594) promoter-TSS (NM_024594) -166 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 29106 chr9 38392582 38392727 + 0 NA promoter-TSS (NM_000692) promoter-TSS (NM_000692) -10 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 15159 chr2 20651107 20651150 + 0 NA promoter-TSS (NM_022460) promoter-TSS (NM_022460) -24 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 19272 chr3 25455564 25455668 + 0 NA intron (NR_110893, intron 1 of 6) intron (NR_110893, intron 1 of 6) -2694 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 19938 chr3 115692994 115693188 + 0 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 69787 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 11859 chr16 89917922 89918026 + 0 NA promoter-TSS (NM_002386) promoter-TSS (NM_002386) 95 NM_002386 4157 Hs.513829 NM_002386 ENSG00000258839 MC1R CMM5|MSH-R|SHEP2 melanocortin 1 receptor protein-coding 14614 chr19 47256473 47256602 + 0 NA promoter-TSS (NM_015603) promoter-TSS (NM_015603) 63 NM_015603 26093 Hs.227782 NM_015603 ENSG00000105321 CCDC9 - coiled-coil domain containing 9 protein-coding 7862 chr12 125065371 125065382 + 0 NA promoter-TSS (NM_001319839) promoter-TSS (NM_001319839) 9 NM_001319839 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 23795 chr5 177546508 177546612 + 0 NA intron (NM_001190946, intron 1 of 8) intron (NM_001190946, intron 1 of 8) 8025 NR_024019 54540 Hs.484289 NM_019057 ENSG00000146067 FAM193B IRIZIO family with sequence similarity 193 member B protein-coding 18122 chr20 46959164 46959266 + 0 NA intron (NM_005244, intron 1 of 15) intron (NM_005244, intron 1 of 15) 64591 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 1630 chr1 145824056 145824124 + 0 NA promoter-TSS (NM_014455) promoter-TSS (NM_014455) 21 NM_006468 10623 Hs.515768 NM_006468 ENSG00000186141 POLR3C RPC3|RPC62 RNA polymerase III subunit C protein-coding 15835 chr2 74529777 74529885 + 0 NA promoter-TSS (NR_126510) promoter-TSS (NR_126510) 66 NR_126510 550 Hs.411480 NM_181575 ENSG00000115307 AUP1 - ancient ubiquitous protein 1 protein-coding 30993 chrX 117992045 117992149 + 0 NA intron (NM_001168303, intron 1 of 6) MamTip2|DNA|hAT-Tip100 -6684 NM_001168299 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 3185 chr10 3091608 3091743 + 0 NA intron (NM_001242339, intron 3 of 23) AluSz|SINE|Alu -12934 NM_001323070 5214 Hs.26010 NM_002627 ENSG00000067057 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 3109 chr1 244301839 244301943 + 0 NA Intergenic Intergenic -50744 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 11015 chr16 11212949 11212977 + 0 NA Intergenic Intergenic 43219 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 5060 chr11 28384503 28384607 + 0 NA Intergenic AluSx|SINE|Alu 92993 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 14157 chr19 13151818 13151971 + 0 NA intron (NM_004907, intron 1 of 1) CpG 1426 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 14820 chr19 55587298 55587416 + 0 NA Intergenic CpG -6512 NM_152600 163033 Hs.112529 NM_152600 ENSG00000218891 ZNF579 - zinc finger protein 579 protein-coding 28508 chr8 119145006 119145166 + 0 NA Intergenic MER81|DNA|hAT-Blackjack -63285 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding 10376 chr15 70410673 70410796 + 0 NA Intergenic Intergenic 175872 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LOC101929151 - uncharacterized LOC101929151 ncRNA 6541 chr12 6904672 6904775 + 0 NA promoter-TSS (NM_006992) promoter-TSS (NM_006992) -10 NM_001135217 10233 Hs.155586 NM_006992 ENSG00000010626 LRRC23 LRPB7 leucine rich repeat containing 23 protein-coding 22198 chr5 9544631 9544772 + 0 NA intron (NM_003966, intron 1 of 22) CpG 1420 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 17633 chr20 13009783 13009887 + 0 NA intron (NM_018327, intron 1 of 11) intron (NM_018327, intron 1 of 11) 856 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 25936 chr7 27917915 27917928 + 0 NA intron (NM_175061, intron 2 of 4) MLT1I|LTR|ERVL-MaLR 177826 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 12007 chr17 6523493 6523529 + 0 NA intron (NM_001165966, intron 2 of 18) intron (NM_001165966, intron 2 of 18) 33046 NM_001165966 83394 Hs.183983 NM_031220 ENSG00000091622 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 26763 chr7 104923007 104923160 + 0 NA intron (NR_027374, intron 1 of 3) MLT1F|LTR|ERVL-MaLR 3562 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 18129 chr20 47319890 47319994 + 0 NA non-coding (NR_024594, exon 1 of 1) non-coding (NR_024594, exon 1 of 1) 1440 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 15666 chr2 64751054 64751204 + 0 NA Intergenic CpG -97217 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2 SERTA domain containing 2 protein-coding 7627 chr12 109154608 109154712 + 0 NA intron (NM_001093, intron 1 of 51) CpG 15263 NM_001093 32 Hs.234898 NM_001093 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 10633 chr15 87154901 87155005 + 0 NA Intergenic Intergenic -166527 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 3256 chr10 6722250 6722319 + 0 NA Intergenic CR1-16_AMi|LINE|CR1 -15098 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in nonhomologous end joining pathway 1 ncRNA 311 chr1 20661406 20661579 + 0 NA promoter-TSS (NM_005216) promoter-TSS (NM_005216) 52 NM_005216 1650 Hs.523145 NM_005216 ENSG00000244038 DDOST AGER1|CDG1R|OKSWcl45|OST|OST48|WBP1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit protein-coding 4537 chr10 122476364 122476468 + 0 NA intron (NM_002775, intron 1 of 8) intron (NM_002775, intron 1 of 8) 14891 NM_002775 5654 Hs.501280 NM_002775 ENSG00000166033 HTRA1 ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11 HtrA serine peptidase 1 protein-coding 12439 chr17 39740717 39740821 + 0 NA intron (NM_001242443, intron 1 of 14) intron (NM_001242443, intron 1 of 14) 802 NM_001242443 2886 Hs.86859 NM_005310 ENSG00000141738 GRB7 - growth factor receptor bound protein 7 protein-coding 28651 chr8 127907943 127908047 + 0 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 40728 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 8850 chr14 34873629 34873733 + 0 NA intron (NM_182648, intron 2 of 25) CpG 1966 NM_182648 11177 Hs.509140 NM_013448 ENSG00000198604 BAZ1A ACF1|WALp1|WCRF180|hACF1 bromodomain adjacent to zinc finger domain 1A protein-coding 23487 chr5 149486062 149486166 + 0 NA Intergenic Intergenic 55468 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 26214 chr7 46908949 46908997 + 0 NA Intergenic Intergenic -211851 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 18709 chr22 24994156 24994267 + 0 NA Intergenic Intergenic -33763 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 3431 chr10 24239002 24239090 + 0 NA intron (NM_001098500, intron 3 of 18) intron (NM_001098500, intron 3 of 18) 30255 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 21208 chr4 15921424 15921600 + 0 NA Intergenic Intergenic 17228 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 4501 chr10 121002771 121002875 + 0 NA Intergenic L2a|LINE|L2 -151644 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 14736 chr19 51108387 51108530 + 0 NA promoter-TSS (NM_145232) promoter-TSS (NM_145232) -68 NM_145232 90353 Hs.148425 NM_145232 ENSG00000142544 CTU1 ATPBD3|NCS6 cytosolic thiouridylase subunit 1 protein-coding 26916 chr7 121442919 121443098 + 0 NA Intergenic Intergenic -46640 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 24667 chr6 48827416 48827588 + 0 NA Intergenic MER54B|LTR|ERVL 635826 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MUT MCM methylmalonyl-CoA mutase protein-coding 3302 chr10 13586877 13587038 + 0 NA promoter-TSS (NM_003675) promoter-TSS (NM_003675) 18 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 22095 chr4 184649533 184649562 + 0 NA promoter-TSS (NM_001345901) promoter-TSS (NM_001345901) -66 NM_152683 201973 Hs.481307 NM_152683 ENSG00000164306 PRIMPOL CCDC111|MYP22|Primpol1 primase and DNA directed polymerase protein-coding 12428 chr17 39027209 39027349 + 0 NA promoter-TSS (NR_135645) promoter-TSS (NR_135645) -169 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 29156 chr9 70046509 70046613 + 0 NA intron (NR_125850, intron 2 of 13) intron (NR_125850, intron 2 of 13) 2980 NM_153267 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 26070 chr7 37198961 37199065 + 0 NA intron (NM_001206482, intron 13 of 21) intron (NM_001206482, intron 13 of 21) 154655 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 20217 chr3 136196473 136196539 + 0 NA promoter-TSS (NM_018133) promoter-TSS (NM_018133) -660 NM_018133 55167 Hs.18631 NM_018133 ENSG00000174579 MSL2 MSL-2|MSL2L1|RNF184 male-specific lethal 2 homolog (Drosophila) protein-coding 1816 chr1 155277234 155277378 + 0 NA promoter-TSS (NR_073074) promoter-TSS (NR_073074) -121 NR_073074 57657 Hs.706960 NM_020897 ENSG00000143630 HCN3 - hyperpolarization activated cyclic nucleotide gated potassium channel 3 protein-coding 9126 chr14 60248999 60249158 + 0 NA promoter-TSS (NM_177951) promoter-TSS (NM_177951) -170 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 5174 chr11 36420925 36421009 + 0 NA intron (NM_001160168, intron 2 of 5) intron (NM_001160168, intron 2 of 5) 19970 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 9399 chr14 75660912 75661074 + 0 NA promoter-TSS (NM_015072) promoter-TSS (NM_015072) 202 NM_007176 11161 Hs.15106 NM_007176 ENSG00000133935 C14orf1 ERG28|NET51 chromosome 14 open reading frame 1 protein-coding 18675 chr22 22111024 22111154 + 0 NA Intergenic Intergenic -67155 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal-like, pseudogene pseudo 5067 chr11 28808902 28809032 + 0 NA Intergenic MLT1E1|LTR|ERVL-MaLR -331419 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 11667 chr16 75939054 75939158 + 0 NA Intergenic LTR18B|LTR|ERVL 291369 NR_144545 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 28629 chr8 127222937 127222967 + 0 NA Intergenic Intergenic -3684 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 (non-protein coding) ncRNA 27685 chr8 37695652 37695736 + 0 NA promoter-TSS (NM_025069) promoter-TSS (NM_025069) -57 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 26306 chr7 55132856 55132960 + 0 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 23091 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 23282 chr5 136620180 136620252 + 0 NA Intergenic Intergenic -254740 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 3824 chr10 69446676 69446754 + 0 NA Intergenic Intergenic -4755 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 3574 chr10 34994662 34994796 + 0 NA Intergenic Intergenic 79601 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 21254 chr4 24658087 24658221 + 0 NA Intergenic Intergenic -73593 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 24441 chr6 35181960 35182020 + 0 NA Intergenic Intergenic -32072 NM_001303136 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 16051 chr2 102355669 102355800 + 0 NA promoter-TSS (NM_003855) promoter-TSS (NM_003855) -549 NM_001282399 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 17869 chr20 32681525 32681629 + 0 NA Intergenic Intergenic -29596 NM_182584 284805 Hs.353262 NM_182584 C20orf203 - chromosome 20 open reading frame 203 protein-coding 22152 chr5 1633857 1633999 + 0 NA promoter-TSS (NR_003713) promoter-TSS (NR_003713) 77 NR_003713 728613 Hs.720393 NR_003713 LOC728613 - programmed cell death 6 pseudogene pseudo 16764 chr2 181552923 181553070 + 0 NA intron (NM_001030312, intron 2 of 9) intron (NM_001030312, intron 2 of 9) 96104 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 15388 chr2 38720788 38720934 + 0 NA intron (NM_138801, intron 4 of 6) MLT1G3|LTR|ERVL-MaLR 30633 NM_001031684 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 20075 chr3 125915861 125916111 + 0 NA promoter-TSS (NR_024250) promoter-TSS (NR_024250) -615 NR_024250 100125556 Hs.553949 NR_024250 ENSG00000171084 FAM86JP - family with sequence similarity 86, member A pseudogene pseudo 8173 chr13 41974695 41974765 + 0 NA intron (NR_039974, intron 2 of 3) intron (NR_039974, intron 2 of 3) 13561 NR_039974 100507240 Hs.147766 NR_039974 ENSG00000278338 VWA8-AS1 - VWA8 antisense RNA 1 (head to head) ncRNA 17538 chr20 6005949 6006120 + 0 NA promoter-TSS (NR_136617) promoter-TSS (NR_136617) -39 NR_136617 54675 Hs.743956 NM_019095 ENSG00000088766 CRLS1 C20orf155|CLS|CLS1|GCD10|dJ967N21.6 cardiolipin synthase 1 protein-coding 5938 chr11 97966237 97966341 + 0 NA Intergenic HUERS-P3-int|LTR|ERV1 -1054687 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 27072 chr7 137539487 137539565 + 0 NA intron (NM_001321710, intron 20 of 32) L1ME1|LINE|L1 -195536 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 16130 chr2 111641258 111641395 + 0 NA Intergenic Intergenic 129808 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 4591 chr10 126598165 126598269 + 0 NA Intergenic Intergenic -76776 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 5508 chr11 66222759 66222886 + 0 NA intron (NM_018026, intron 10 of 23) intron (NM_018026, intron 10 of 23) -34472 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 14208 chr19 15836849 15836996 + 0 NA TTS (NR_015379) TTS (NR_015379) 7975 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36 urothelial cancer associated 1 (non-protein coding) ncRNA 29751 chr9 106076142 106076253 + 0 NA Intergenic Intergenic 381672 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 8344 chr13 73262012 73262142 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger 203285 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 14529 chr19 44741946 44742144 + 0 NA Intergenic Intergenic -6676 NM_005178 602 Hs.31210 NM_005178 ENSG00000069399 BCL3 BCL4|D19S37 B-cell CLL/lymphoma 3 protein-coding 17426 chr20 408264 408359 + 0 NA non-coding (NR_136659, exon 1 of 12) non-coding (NR_136659, exon 1 of 12) 261 NM_001323960 10616 Hs.29546 NM_006462 ENSG00000125826 RBCK1 C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 RANBP2-type and C3HC4-type zinc finger containing 1 protein-coding 486 chr1 28648886 28648990 + 0 NA TTS (NR_004407) TTS (NR_004407) 338 NR_004407 26824 Hs.640266 NR_004407 ENSG00000270103 RNU11 RNU11-1|U11 RNA, U11 small nuclear snRNA 17371 chr2 238847921 238848075 + 0 NA promoter-TSS (NM_057179) promoter-TSS (NM_057179) -34 NM_057179 117581 Hs.422585 NM_057179 ENSG00000233608 TWIST2 AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39 twist family bHLH transcription factor 2 protein-coding 22623 chr5 62403914 62404071 + 0 NA promoter-TSS (NM_014473) promoter-TSS (NM_014473) -91 NM_014473 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIM1 dimethyladenosine transferase 1 homolog protein-coding 21689 chr4 109472469 109472573 + 0 NA intron (NM_006323, intron 2 of 23) intron (NM_006323, intron 2 of 23) -16177 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 4213 chr10 100267661 100267765 + 0 NA promoter-TSS (NM_001303404) promoter-TSS (NM_001303404) -32 NM_001303404 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19-like 1, cell cycle control (S. pombe) protein-coding 29200 chr9 71929328 71929473 + 0 NA intron (NM_182505, intron 1 of 3) intron (NM_182505, intron 1 of 3) 17893 NM_182505 138241 Hs.534190 NM_182505 ENSG00000155621 C9orf85 - chromosome 9 open reading frame 85 protein-coding 26100 chr7 39949565 39949658 + 0 NA promoter-TSS (NM_031267) promoter-TSS (NM_031267) -749 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 19645 chr3 69086499 69086635 + 0 NA intron (NM_006407, intron 1 of 2) intron (NM_006407, intron 1 of 2) 1628 NM_006407 10550 Hs.518060 NM_006407 ENSG00000144746 ARL6IP5 DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx ADP ribosylation factor like GTPase 6 interacting protein 5 protein-coding 10380 chr15 70508047 70508151 + 0 NA Intergenic MIRb|SINE|MIR 78507 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LOC101929151 - uncharacterized LOC101929151 ncRNA 10611 chr15 85380320 85380490 + 0 NA promoter-TSS (NR_106993) promoter-TSS (NR_106993) -191 NR_106993 102465803 NR_106993 ENSG00000170776 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 24677 chr6 51514537 51514641 + 0 NA Intergenic Intergenic -107281 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 20872 chr3 186760496 186760600 + 0 NA Intergenic MER21A|LTR|ERVL -23024 NM_001967 1974 Hs.518475 NM_001967 ENSG00000156976 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 686 chr1 39883431 39883611 + 0 NA promoter-TSS (NM_017646) promoter-TSS (NM_017646) -10 NR_132409 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 27728 chr8 40600479 40600552 + 0 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) 297309 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 5310 chr11 59266621 59266807 + 0 NA Intergenic Intergenic -53693 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1 macrophage expressed 1 protein-coding 3149 chr1 247331248 247331352 + 0 NA intron (NM_001329733, intron 2 of 9) CpG 640 NM_001329733 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 17675 chr20 17024601 17024688 + 0 NA Intergenic Intergenic -201463 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 22442 chr5 40835244 40835386 + 0 NA promoter-TSS (NM_000997) promoter-TSS (NM_000997) -30 NM_000997 6167 Hs.447582 NM_000997 ENSG00000145592 RPL37 L37 ribosomal protein L37 protein-coding 8735 chr14 23469462 23469618 + 0 NA promoter-TSS (NM_001042635) promoter-TSS (NM_001042635) -149 NM_015514 25983 Hs.9043 NM_015514 ENSG00000129460 NGDN C14orf120|CANu1|LCP5|NGD|lpd-2 neuroguidin protein-coding 12469 chr17 40582443 40582547 + 0 NA Intergenic Intergenic -17011 NM_001301714 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 23048 chr5 115306125 115306278 + 0 NA Intergenic Intergenic -9440 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 18610 chr22 17628796 17628900 + 0 NA promoter-TSS (NM_001696) promoter-TSS (NM_001696) -26 NM_001039366 529 Hs.517338 NM_001696 ENSG00000131100 ATP6V1E1 ATP6E|ATP6E2|ATP6V1E|P31|Vma4 ATPase H+ transporting V1 subunit E1 protein-coding 14694 chr19 49590200 49590350 + 0 NA intron (NM_001316335, intron 6 of 6) intron (NM_001316335, intron 6 of 6) -1368 NM_020719 57479 Hs.590971 NM_020719 ENSG00000126464 PRR12 KIAA1205 proline rich 12 protein-coding 943 chr1 58700062 58700166 + 0 NA promoter-TSS (NM_001085487) promoter-TSS (NM_001085487) -39 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB Myb like, SWIRM and MPN domains 1 protein-coding 8493 chr13 98998097 98998171 + 0 NA intron (NM_001130049, intron 1 of 32) intron (NM_001130049, intron 1 of 32) -20050 NM_001130050 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 1887 chr1 159015616 159015720 + 0 NA intron (NM_001206567, intron 2 of 10) intron (NM_001206567, intron 2 of 10) 5776 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 30586 chrX 27675652 27675756 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL -71105 NM_001136533 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 30087 chr9 124658260 124658413 + 0 NA promoter-TSS (NR_038975) promoter-TSS (NR_038975) -100 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 12568 chr17 44899624 44899730 + 0 NA promoter-TSS (NM_001258353) promoter-TSS (NM_001258353) -35 NM_001258398 388389 Hs.743398 NM_213607 ENSG00000167131 CCDC103 CILD17|PR46b|SMH coiled-coil domain containing 103 protein-coding 27807 chr8 51395090 51395194 + 0 NA intron (NM_144651, intron 17 of 22) Arthur1|DNA|hAT-Tip100 414303 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 1585 chr1 116919143 116919226 + 0 NA intron (NM_020440, intron 1 of 8) intron (NM_020440, intron 1 of 8) 9261 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 4709 chr11 3797733 3797869 + 0 NA promoter-TSS (NM_001283038) promoter-TSS (NM_001283038) -9 NM_005387 4928 Hs.524750 NM_005387 ENSG00000110713 NUP98 ADIR2|NUP196|NUP96 nucleoporin 98 protein-coding 11931 chr17 2926139 2926243 + 0 NA intron (NM_001330058, intron 3 of 24) intron (NM_001330058, intron 3 of 24) 39704 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 4474 chr10 119461493 119461656 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 74959 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G-protein signaling 10 protein-coding 2705 chr1 218377295 218377483 + 0 NA intron (NM_001135599, intron 2 of 7) intron (NM_001135599, intron 2 of 7) -31711 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 690 chr1 39980670 39980815 + 0 NA Intergenic Intergenic 25630 NM_032793 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 19948 chr3 116770976 116771080 + 0 NA Intergenic Intergenic 61240 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 (non-protein coding) ncRNA 18995 chr22 44498256 44498360 + 0 NA promoter-TSS (NM_032287) promoter-TSS (NM_032287) -183 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 LDOC1L Mar6|Mart6|dJ1033E15.2 leucine zipper down-regulated in cancer 1 like protein-coding 61 chr1 3717554 3717658 + 0 NA intron (NM_001204186, intron 4 of 10) intron (NM_001204186, intron 4 of 10) 19560 NM_001204192 7161 Hs.192132 NM_005427 ENSG00000078900 TP73 P73 tumor protein p73 protein-coding 13369 chr18 28019871 28019975 + 0 NA intron (NM_001792, intron 2 of 15) intron (NM_001792, intron 2 of 15) 16662 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 10691 chr15 90293465 90293566 + 0 NA Intergenic Intergenic -27756 NR_102428 10519 Hs.715556 NM_006384 ENSG00000185043 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 protein-coding 15937 chr2 88074869 88074973 + 0 NA intron (NM_001330364, intron 1 of 8) intron (NM_001330364, intron 1 of 8) 7141 NM_198274 150572 Hs.516176 NM_198274 ENSG00000115593 SMYD1 BOP|KMT3D|ZMYND18|ZMYND22 SET and MYND domain containing 1 protein-coding 23939 chr6 5260435 5260539 + 0 NA promoter-TSS (NM_001318872) promoter-TSS (NM_001318872) 463 NM_001164840 57128 Hs.387755 NM_020408 ENSG00000214113 LYRM4 C6orf149|CGI-203|COXPD19|ISD11 LYR motif containing 4 protein-coding 13995 chr19 6103413 6103550 + 0 NA intron (NM_134433, intron 1 of 16) intron (NM_134433, intron 1 of 16) 7172 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 28018 chr8 73136130 73136184 + 0 NA Intergenic LTR40A1|LTR|ERVL -42885 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 20083 chr3 126508813 126508917 + 0 NA intron (NM_144639, intron 3 of 19) intron (NM_144639, intron 3 of 19) 8908 NM_001165974 131669 Hs.331148 NM_144639 ENSG00000159650 UROC1 HMFN0320|UROCD urocanate hydratase 1 protein-coding 16179 chr2 113756520 113756674 + 0 NA promoter-TSS (NR_104470) promoter-TSS (NR_104470) 96 NM_001330314 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 18018 chr20 41003431 41003535 + 0 NA intron (NM_001318197, intron 1 of 3) MIR3|SINE|MIR 22722 NM_001318196 100128988 Hs.636443 NM_001318196 LOC100128988 - uncharacterized LOC100128988 protein-coding 8321 chr13 62642998 62643140 + 0 NA Intergenic LTR10F|LTR|ERV1 153623 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 24800 chr6 75243805 75243927 + 0 NA promoter-TSS (NR_029466) promoter-TSS (NR_029466) 62 NM_001865 1347 Hs.70312 NM_001865 ENSG00000112695 COX7A2 COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL cytochrome c oxidase subunit 7A2 protein-coding 28256 chr8 97519887 97519904 + 0 NA Intergenic Tigger14a|DNA|TcMar-Tigger -73398 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 5780 chr11 85855045 85855194 + 0 NA promoter-TSS (NM_173556) promoter-TSS (NM_173556) 18 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9 coiled-coil domain containing 83 protein-coding 25386 chr6 155493662 155493780 + 0 NA Intergenic Intergenic -21123 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 2654 chr1 213465351 213465383 + 0 NA Intergenic L1ME3Cz|LINE|L1 414134 NM_001287219 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 24475 chr6 36885763 36885917 + 0 NA promoter-TSS (NM_001286635) promoter-TSS (NM_001286635) -24 NM_001286637 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP chromosome 6 open reading frame 89 protein-coding 25342 chr6 151060092 151060196 + 0 NA intron (NM_001242768, intron 26 of 27) intron (NM_001242768, intron 26 of 27) 168313 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 25012 chr6 110874681 110874839 + 0 NA promoter-TSS (NR_109768) promoter-TSS (NR_109768) -24 NM_001287214 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 24463 chr6 36547485 36547637 + 0 NA promoter-TSS (NM_007271) promoter-TSS (NM_007271) -45 NM_007271 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 4144 chr10 96832091 96832195 + 0 NA promoter-TSS (NM_001170766) promoter-TSS (NM_001170766) -117 NM_001346516 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 17367 chr2 238426824 238426951 + 0 NA promoter-TSS (NM_001330196) promoter-TSS (NM_001330196) -41 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 3627 chr10 44752958 44753096 + 0 NA Intergenic Intergenic -158289 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 13949 chr19 4400637 4400756 + 0 NA promoter-TSS (NM_001199944) promoter-TSS (NM_001199944) -128 NM_001199943 6455 Hs.97616 NM_003025 ENSG00000141985 SH3GL1 CNSA1|EEN|SH3D2B|SH3P8 SH3 domain containing GRB2 like 1, endophilin A2 protein-coding 30576 chrX 24054589 24054591 + 0 NA promoter-TSS (NM_001415) promoter-TSS (NM_001415) -358 NM_001415 1968 Hs.539684 NM_001415 ENSG00000130741 EIF2S3 EIF2|EIF2G|EIF2gamma|MRXSBRK|eIF-2gA eukaryotic translation initiation factor 2 subunit gamma protein-coding 22234 chr5 13591736 13591840 + 0 NA Intergenic Intergenic 352692 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 5907 chr11 95705733 95705826 + 0 NA Intergenic Intergenic 84011 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 23603 chr5 157743590 157743685 + 0 NA promoter-TSS (NM_173491) promoter-TSS (NM_173491) -58 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 20110 chr3 128879470 128879597 + 0 NA promoter-TSS (NM_014049) promoter-TSS (NM_014049) 43 NM_014049 28976 Hs.567482 NM_014049 ENSG00000177646 ACAD9 NPD002 acyl-CoA dehydrogenase family member 9 protein-coding 19436 chr3 44993277 44993381 + 0 NA intron (NM_015004, intron 3 of 7) intron (NM_015004, intron 3 of 7) 17080 NR_023353 23016 Hs.719958 NM_015004 ENSG00000075914 EXOSC7 EAP1|RRP42|Rrp42p|hRrp42p|p8 exosome component 7 protein-coding 7466 chr12 96194438 96194542 + 0 NA 5' UTR (NM_005230, exon 1 of 5) 5' UTR (NM_005230, exon 1 of 5) 108 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ELK3, ETS transcription factor protein-coding 29554 chr9 92716022 92716159 + 0 NA intron (NM_015250, intron 6 of 7) intron (NM_015250, intron 6 of 7) -45825 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 28649 chr8 127859956 127860108 + 0 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 64070 NR_031609 100302185 NR_031609 ENSG00000249859 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 5503 chr11 65961576 65961665 + 0 NA promoter-TSS (NM_005146) promoter-TSS (NM_005146) -69 NM_005146 9092 Hs.502883 NM_005146 ENSG00000175467 SART1 Ara1|HOMS1|SART1259|SNRNP110|Snu66 squamous cell carcinoma antigen recognized by T-cells 1 protein-coding 573 chr1 33036904 33037069 + 0 NA promoter-TSS (NM_001625) promoter-TSS (NM_001625) -75 NM_001319140 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 19019 chr22 46035962 46035968 + 0 NA Intergenic CpG 8903 NR_027036 100271722 Hs.528519 NR_027036 LINC00899 - long intergenic non-protein coding RNA 899 ncRNA 14074 chr19 10380702 10380806 + 0 NA promoter-TSS (NM_003331) promoter-TSS (NM_003331) -182 NM_003331 7297 Hs.75516 NM_003331 ENSG00000105397 TYK2 IMD35|JTK1 tyrosine kinase 2 protein-coding 27147 chr7 142583562 142583666 + 0 NA Intergenic L1MEc|LINE|L1 -82685 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 12353 chr17 34980431 34980538 + 0 NA promoter-TSS (NM_002311) promoter-TSS (NM_002311) -14 NM_002311 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2 DNA ligase 3 protein-coding 12311 chr17 31274452 31274584 + 0 NA intron (NM_001042492, intron 36 of 57) intron (NM_001042492, intron 36 of 57) 22844 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 18732 chr22 27107975 27108111 + 0 NA Intergenic Intergenic -47525 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 3446 chr10 24732041 24732211 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR -8458 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 638 chr1 36450433 36450582 + 0 NA promoter-TSS (NM_145047) promoter-TSS (NM_145047) -22 NM_001330493 127700 Hs.202207 NM_145047 ENSG00000116885 OSCP1 C1orf102|NOR1 organic solute carrier partner 1 protein-coding 24711 chr6 53615816 53615920 + 0 NA Intergenic Intergenic -12512 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 23952 chr6 6803692 6803843 + 0 NA Intergenic Intergenic -180941 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13506 chr18 46173888 46174008 + 0 NA promoter-TSS (NM_001008239) promoter-TSS (NM_001008239) -74 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 26644 chr7 96902111 96902247 + 0 NA Intergenic MIRb|SINE|MIR -103799 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 3218 chr10 5446479 5446583 + 0 NA promoter-TSS (NM_005863) promoter-TSS (NM_005863) -20 NM_005863 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 15355 chr2 37084383 37084487 + 0 NA promoter-TSS (NM_019024) promoter-TSS (NM_019024) -16 NM_001322249 253635 Hs.595250 NM_174931 ENSG00000152133 GPATCH11 CCDC75|CENP-Y|CENPY G-patch domain containing 11 protein-coding 18133 chr20 47453273 47453308 + 0 NA Intergenic FRAM|SINE|Alu -48567 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 20946 chr3 190386436 190386601 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -1354 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 661 chr1 38126236 38126366 + 0 NA Intergenic Intergenic 37070 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 3157 chr1 247937022 247937208 + 0 NA promoter-TSS (NM_001304535) promoter-TSS (NM_001304535) 86 NM_175911 284521 Hs.372936 NM_175911 ENSG00000196071 OR2L13 OR2L14 olfactory receptor family 2 subfamily L member 13 protein-coding 14929 chr2 3651111 3651228 + 0 NA Intergenic CpG -7027 NM_018436 55821 Hs.97899 NM_018436 ENSG00000151360 ALLC ALC allantoicase protein-coding 2719 chr1 219279563 219279587 + 0 NA Intergenic Intergenic 104606 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 2690 chr1 216456793 216456926 + 0 NA Intergenic Intergenic -33463 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 29627 chr9 96449984 96450181 + 0 NA promoter-TSS (NM_014282) promoter-TSS (NM_014282) -73 NM_014282 22927 Hs.494567 NM_014282 ENSG00000130956 HABP4 IHABP-4|IHABP4|Ki-1/57|SERBP1L hyaluronan binding protein 4 protein-coding 23105 chr5 122751626 122751790 + 0 NA Intergenic LTR33|LTR|ERVL -21148 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LOC101927379 - uncharacterized LOC101927379 ncRNA 17652 chr20 14220324 14220428 + 0 NA intron (NM_080676, intron 3 of 16) L1PBa1|LINE|L1 117291 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 2727 chr1 219798834 219798938 + 0 NA Intergenic AluSz6|SINE|Alu 129765 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 29036 chr9 33229532 33229686 + 0 NA Intergenic Intergenic -10555 NM_014471 27290 Hs.555934 NM_014471 ENSG00000122711 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 26658 chr7 98131788 98131929 + 0 NA intron (NM_014916, intron 1 of 13) intron (NM_014916, intron 1 of 13) 24973 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 6837 chr12 32106797 32106951 + 0 NA promoter-TSS (NM_001714) promoter-TSS (NM_001714) -377 NM_001003398 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD BICD cargo adaptor 1 protein-coding 6676 chr12 14952379 14952524 + 0 NA intron (NM_001175, intron 1 of 5) intron (NM_001175, intron 1 of 5) -1300 NM_001321422 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 4328 chr10 109915110 109915214 + 0 NA intron (NM_001167604, intron 1 of 19) intron (NM_001167604, intron 1 of 19) 8084 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 6709 chr12 19097038 19097192 + 0 NA Intergenic Intergenic -32577 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 20466 chr3 155745128 155745232 + 0 NA Intergenic Intergenic -40972 NM_014996 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 6097 chr11 112620714 112620785 + 0 NA Intergenic Intergenic -64947 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LOC387810 - uncharacterized LOC387810 ncRNA 6780 chr12 27336471 27336547 + 0 NA intron (NM_001248005, intron 1 of 13) intron (NM_001248005, intron 1 of 13) 3655 NM_001248002 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 9762 chr14 105622735 105622839 + 0 NA Intergenic Intergenic 1671 NR_107059 102466889 NR_107059 ENSG00000277030 MIR8071-2 hsa-mir-8071-2 microRNA 8071-2 ncRNA 27533 chr8 23288012 23288126 + 0 NA promoter-TSS (NM_001136108) promoter-TSS (NM_001136108) -23 NM_001136108 203069 Hs.458644 NM_001136108 ENSG00000104679 R3HCC1 - R3H domain and coiled-coil containing 1 protein-coding 3025 chr1 236089556 236089660 + 0 NA Intergenic Intergenic -24427 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 8913 chr14 38187586 38187738 + 0 NA Intergenic L2c|LINE|L2 -20337 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 21289 chr4 38157741 38157752 + 0 NA Intergenic Intergenic 37792 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 26893 chr7 117445334 117445438 + 0 NA Intergenic LTR16A1|LTR|ERVL -17863 NM_001301821 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 26126 chr7 41943100 41943204 + 0 NA Intergenic Intergenic -240044 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin beta A subunit protein-coding 27364 chr8 9075046 9075179 + 0 NA Intergenic Intergenic 26667 NR_039804 100616350 NR_039804 ENSG00000263407 MIR4660 - microRNA 4660 ncRNA 927 chr1 56578299 56578371 + 0 NA intron (NM_003713, intron 1 of 5) intron (NM_003713, intron 1 of 5) 1249 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 8369 chr13 75760296 75760400 + 0 NA promoter-TSS (NM_015842) promoter-TSS (NM_015842) -73 NM_001330583 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 5475 chr11 65452901 65452994 + 0 NA Intergenic Intergenic 8489 NR_030343 693197 NR_030343 ENSG00000245532 MIR612 MIRN612|hsa-mir-612 microRNA 612 ncRNA 9467 chr14 81170378 81170532 + 0 NA Intergenic L1P4a|LINE|L1 32379 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 18120 chr20 46739615 46739712 + 0 NA Intergenic L2|LINE|L2 30023 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATS|GLUT10 solute carrier family 2 member 10 protein-coding 3180 chr10 1420932 1421092 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -105618 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 11743 chr16 82263609 82263713 + 0 NA Intergenic Intergenic -93437 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 15471 chr2 45651180 45651226 + 0 NA promoter-TSS (NM_005400) promoter-TSS (NM_005400) -701 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 29498 chr9 89549235 89549339 + 0 NA Intergenic L1ME3B|LINE|L1 -55725 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 19027 chr22 46515662 46515679 + 0 NA intron (NM_014246, intron 1 of 34) intron (NM_014246, intron 1 of 34) 21500 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 11387 chr16 55663920 55664024 + 0 NA intron (NM_001172504, intron 1 of 13) MER21A|LTR|ERVL 7328 NM_001172504 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 13040 chr17 76501307 76501461 + 0 NA promoter-TSS (NM_024599) promoter-TSS (NM_024599) 43 NM_024599 79651 Hs.464157 NM_024599 ENSG00000129667 RHBDF2 RHBDL5|RHBDL6|TEC|TOC|TOCG|iRhom2 rhomboid 5 homolog 2 protein-coding 24075 chr6 13725607 13725711 + 0 NA Intergenic Intergenic -14095 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 10447 chr15 74615718 74615733 + 0 NA exon (NM_001130028, exon 1 of 13) exon (NM_001130028, exon 1 of 13) 731 NM_001130028 1198 Hs.511790 NM_001292 ENSG00000179335 CLK3 PHCLK3|PHCLK3/152 CDC like kinase 3 protein-coding 27861 chr8 55215159 55215263 + 0 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 112754 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 652 chr1 37859647 37859757 + 0 NA promoter-TSS (NM_005955) promoter-TSS (NM_005955) -82 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 21438 chr4 73069795 73069935 + 0 NA promoter-TSS (NM_001297732) promoter-TSS (NM_001297732) -106 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS COX18, cytochrome c oxidase assembly factor protein-coding 9598 chr14 94334956 94334982 + 0 NA Intergenic MIR|SINE|MIR -11618 NM_001756 866 Hs.532635 NM_001756 ENSG00000170099 SERPINA6 CBG serpin family A member 6 protein-coding 30615 chrX 38803949 38804093 + 0 NA promoter-TSS (NR_046706) promoter-TSS (NR_046706) -138 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 28568 chr8 123396516 123396656 + 0 NA promoter-TSS (NM_014109) promoter-TSS (NM_014109) -121 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family, AAA domain containing 2 protein-coding 18568 chr21 42893119 42893198 + 0 NA promoter-TSS (NM_001001503) promoter-TSS (NM_001001503) -110 NM_001001503 4731 Hs.473937 NM_021075 ENSG00000160194 NDUFV3 CI-10k|CI-9KD NADH:ubiquinone oxidoreductase subunit V3 protein-coding 7745 chr12 120229919 120230115 + 0 NA intron (NM_001080855, intron 1 of 11) intron (NM_001080855, intron 1 of 11) 20144 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 4445 chr10 118062870 118062917 + 0 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -16009 NM_001330167 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 14233 chr19 17226412 17226533 + 0 NA intron (NM_024578, intron 1 of 5) CpG 268 NM_024578 79629 Hs.422676 NM_024578 ENSG00000099330 OCEL1 FWP009|S863-9 occludin/ELL domain containing 1 protein-coding 3851 chr10 71377482 71377493 + 0 NA Intergenic CpG -19447 NM_001171931 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|USH1D cadherin related 23 protein-coding 25164 chr6 133099689 133099793 + 0 NA intron (NR_026969, intron 2 of 3) intron (NR_026969, intron 2 of 3) 11661 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 10144 chr15 55918112 55918216 + 0 NA intron (NM_001329212, intron 5 of 28) intron (NM_001329212, intron 5 of 28) -1033 NM_001284338 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding 15130 chr2 19901641 19901788 + 0 NA exon (NM_001008237, exon 1 of 3) exon (NM_001008237, exon 1 of 3) 272 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 844 chr1 47650361 47650465 + 0 NA Intergenic Intergenic -213096 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 27130 chr7 141738209 141738378 + 0 NA promoter-TSS (NR_015392) promoter-TSS (NR_015392) -28 NM_001256513 6742 Hs.490394 NM_003143 ENSG00000106028 SSBP1 Mt-SSB|SOSS-B1|SSBP|mtSSB single stranded DNA binding protein 1 protein-coding 12155 chr17 17110019 17110123 + 0 NA intron (NM_201274, intron 3 of 23) MSTB1|LTR|ERVL-MaLR 67311 NM_015134 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 18844 chr22 36374777 36374838 + 0 NA intron (NM_002473, intron 1 of 40) intron (NM_002473, intron 1 of 40) 13260 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 272 chr1 18956622 18956697 + 0 NA promoter-TSS (NM_001136265) promoter-TSS (NM_001136265) -327 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 9583 chr14 93207007 93207158 + 0 NA promoter-TSS (NM_175748) promoter-TSS (NM_175748) 26 NM_175748 55148 Hs.648806 NM_175748 ENSG00000012963 UBR7 C14orf130 ubiquitin protein ligase E3 component n-recognin 7 (putative) protein-coding 14458 chr19 40466117 40466221 + 0 NA promoter-TSS (NM_000713) promoter-TSS (NM_000713) -351 NM_000713 645 Hs.515785 NM_000713 ENSG00000090013 BLVRB BVRB|FLR|HEL-S-10|SDR43U1 biliverdin reductase B protein-coding 23910 chr6 3518393 3518518 + 0 NA Intergenic Intergenic -61896 NM_015482 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 16684 chr2 174264145 174264249 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger -15527 NM_013341 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 2518 chr1 207027410 207027514 + 0 NA intron (NM_001083924, intron 1 of 2) intron (NM_001083924, intron 1 of 2) 5294 NM_023938 79098 Hs.32417 NM_023938 ENSG00000182795 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 16181 chr2 113858887 113858991 + 0 NA intron (NR_110174, intron 2 of 4) intron (NR_110174, intron 2 of 4) -30995 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 ARP3 actin related protein 3 homolog protein-coding 30820 chrX 72018539 72018710 + 0 NA intron (NM_001013627, intron 1 of 7) CpG -25785 NR_002309 441502 Hs.449523 NR_002309 RPS26P11 RPS26L1|RPS26_22_1784|bA366E13.1 ribosomal protein S26 pseudogene 11 pseudo 8244 chr13 48155894 48156049 + 0 NA Intergenic Intergenic -60830 NM_001270629 29079 Hs.181112 NM_014166 ENSG00000136146 MED4 ARC36|DRIP36|HSPC126|TRAP36|VDRIP mediator complex subunit 4 protein-coding 20108 chr3 128680696 128680867 + 0 NA Intergenic CpG -29905 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 6010 chr11 106950108 106950248 + 0 NA intron (NM_001256424, intron 3 of 8) intron (NM_001256424, intron 3 of 8) 68267 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 2376 chr1 201482212 201482329 + 0 NA Intergenic Intergenic -13099 NM_012396 23612 Hs.153944 NM_012396 ENSG00000174307 PHLDA3 TIH1 pleckstrin homology like domain family A member 3 protein-coding 9705 chr14 102524736 102524866 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -14843 NR_036192 100422954 NR_036192 ENSG00000266015 MIR4309 - microRNA 4309 ncRNA 6172 chr11 118912384 118912431 + 0 NA Intergenic Intergenic -1503 NM_182557 283149 Hs.414740 NM_182557 ENSG00000186174 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 13416 chr18 32921588 32921692 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -148629 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 11705 chr16 80614110 80614214 + 0 NA intron (NM_152342, intron 4 of 6) intron (NM_152342, intron 4 of 6) -41354 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 3562 chr10 34280654 34280758 + 0 NA intron (NM_001184791, intron 17 of 20) intron (NM_001184791, intron 17 of 20) -508026 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 26950 chr7 124765860 124765911 + 0 NA 5' UTR (NM_005302, exon 1 of 2) 5' UTR (NM_005302, exon 1 of 2) 140 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 16837 chr2 191020413 191020531 + 0 NA Intergenic CpG -1054 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 21448 chr4 74374717 74374879 + 0 NA intron (NM_001432, intron 1 of 4) AmnSINE1|SINE|5S-Deu-L2 9655 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 11540 chr16 68737204 68737348 + 0 NA promoter-TSS (NM_001317184) promoter-TSS (NM_001317184) -14 NM_001317186 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 19885 chr3 112149368 112149483 + 0 NA intron (NR_135297, intron 22 of 22) L1PA16|LINE|L1 -16120 NM_001190259 257144 Hs.49614 NM_152785 ENSG00000174500 GCSAM GCAT2|GCET2|HGAL germinal center associated signaling and motility protein-coding 13468 chr18 41955083 41955198 + 0 NA promoter-TSS (NM_001308020) promoter-TSS (NM_001308020) -58 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 7614 chr12 108562458 108562534 + 0 NA non-coding (NR_135127, exon 1 of 7) non-coding (NR_135127, exon 1 of 7) 1033 NM_001320042 23479 Hs.615131 NM_014301 ENSG00000136003 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 5342 chr11 61385698 61385845 + 0 NA Intergenic LTR41B|LTR|ERVL -6589 NM_001173991 51259 Hs.26745 NM_016499 ENSG00000187049 TMEM216 HSPC244 transmembrane protein 216 protein-coding 4953 chr11 18105987 18106115 + 0 NA promoter-TSS (NM_138421) promoter-TSS (NM_138421) 40 NM_138421 113174 Hs.591998 NM_138421 ENSG00000166788 SAAL1 SPACIA1 serum amyloid A like 1 protein-coding 12430 chr17 39244878 39244980 + 0 NA Intergenic Intergenic -19142 NM_198993 342667 Hs.145068 NM_198993 ENSG00000141750 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 29730 chr9 104869067 104869171 + 0 NA intron (NM_005502, intron 5 of 49) intron (NM_005502, intron 5 of 49) 59127 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 24547 chr6 42088265 42088457 + 0 NA Intergenic Intergenic 37848 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 21272 chr4 27100817 27100921 + 0 NA Intergenic Intergenic -116610 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LOC101929199 - uncharacterized LOC101929199 ncRNA 29684 chr9 99104788 99104835 + 0 NA promoter-TSS (NM_004612) promoter-TSS (NM_004612) -278 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 24522 chr6 39725360 39725512 + 0 NA promoter-TSS (NM_001289020) promoter-TSS (NM_001289020) -31 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 16727 chr2 177618927 177618975 + 0 NA promoter-TSS (NM_152275) promoter-TSS (NM_152275) 15 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A tetratricopeptide repeat domain 30A protein-coding 6044 chr11 110092698 110092864 + 0 NA promoter-TSS (NM_033390) promoter-TSS (NM_033390) -580 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 8028 chr13 28139192 28139301 + 0 NA promoter-TSS (NR_029383) promoter-TSS (NR_029383) -72 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 20923 chr3 189841645 189841759 + 0 NA intron (NM_001329964, intron 4 of 13) intron (NM_001329964, intron 4 of 13) 11780 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 9149 chr14 61439184 61439292 + 0 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 117795 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 14376 chr19 35693936 35694040 + 0 NA Intergenic Intergenic -10499 NM_014383 27033 Hs.99430 NM_014383 ENSG00000011590 ZBTB32 FAXF|FAZF|Rog|TZFP|ZNF538 zinc finger and BTB domain containing 32 protein-coding 27345 chr8 8270516 8270749 + 0 NA Intergenic Intergenic 42062 NR_024363 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 24640 chr6 47134866 47135026 + 0 NA Intergenic Intergenic -92583 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 21613 chr4 99404644 99404748 + 0 NA Intergenic Intergenic 30438 NM_001166504 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 3638 chr10 45594820 45594979 + 0 NA promoter-TSS (NM_145021) promoter-TSS (NM_145021) 7 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 10656 chr15 89088166 89088333 + 0 NA promoter-TSS (NM_007011) promoter-TSS (NM_007011) 99 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 2081 chr1 173868043 173868147 + 0 NA promoter-TSS (NR_002578) promoter-TSS (NR_002578) 13 NM_001346115 84614 Hs.668497 NM_032522 ENSG00000185278 ZBTB37 D430004I08Rik|ZNF908 zinc finger and BTB domain containing 37 protein-coding 22519 chr5 53173155 53173259 + 0 NA Intergenic Intergenic 63365 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 15654 chr2 64210947 64211054 + 0 NA Intergenic L2a|LINE|L2 -5515 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 4416 chr10 114938101 114938248 + 0 NA promoter-TSS (NM_139169) promoter-TSS (NM_139169) -19 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 8462 chr13 97122592 97122696 + 0 NA Intergenic Intergenic 56978 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 26435 chr7 75739097 75739251 + 0 NA promoter-TSS (NM_001243198) promoter-TSS (NM_001243198) -202 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 1855 chr1 156624495 156624553 + 0 NA intron (NM_021817, intron 5 of 6) CpG-1843 -2596 NR_135113 101928177 Hs.571810 NR_135113 LOC101928177 - uncharacterized LOC101928177 ncRNA 11109 chr16 21150858 21150962 + 0 NA promoter-TSS (NM_001347886) promoter-TSS (NM_001347886) -103 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 9223 chr14 65179936 65180040 + 0 NA Intergenic Intergenic 42359 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 22474 chr5 43603112 43603243 + 0 NA promoter-TSS (NM_182977) promoter-TSS (NM_182977) 50 NM_001331026 23530 Hs.482043 NM_012343 ENSG00000112992 NNT GCCD4 nicotinamide nucleotide transhydrogenase protein-coding 16383 chr2 138060503 138060607 + 0 NA Intergenic Intergenic -41329 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 13392 chr18 31303094 31303198 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB -14943 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 26462 chr7 77331977 77332094 + 0 NA intron (NM_017439, intron 19 of 30) intron (NM_017439, intron 19 of 30) -83163 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 27725 chr8 40201829 40201966 + 0 NA Intergenic Intergenic 48429 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 19033 chr22 46742920 46743058 + 0 NA Intergenic Intergenic -4734 NM_022766 64781 Hs.200668 NM_022766 ENSG00000100422 CERK LK4|dA59H18.2|dA59H18.3|hCERK ceramide kinase protein-coding 4235 chr10 101354017 101354121 + 0 NA promoter-TSS (NM_001256856) promoter-TSS (NM_001256856) 36 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 12471 chr17 40903739 40903846 + 0 NA Intergenic L2a|LINE|L2 -18549 NM_019010 54474 Hs.84905 NM_019010 ENSG00000171431 KRT20 CD20|CK-20|CK20|K20|KRT21 keratin 20 protein-coding 28532 chr8 121097519 121097662 + 0 NA Intergenic MLT2F|LTR|ERVL -285521 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 19875 chr3 111860547 111860629 + 0 NA intron (NM_001134439, intron 1 of 17) intron (NM_001134439, intron 1 of 17) 867 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 5713 chr11 78574807 78574929 + 0 NA promoter-TSS (NM_001243251) promoter-TSS (NM_001243251) -4 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 9520 chr14 88983904 88984008 + 0 NA Intergenic Intergenic 159803 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 25247 chr6 142377344 142377493 + 0 NA intron (NM_001032394, intron 4 of 24) MER61C|LTR|ERV1 75499 NM_001032395 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 13539 chr18 48942677 48942781 + 0 NA promoter-TSS (NM_001190823) promoter-TSS (NM_001190823) 78 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 21823 chr4 139168145 139168239 + 0 NA intron (NM_001331036, intron 1 of 9) MER65-int|LTR|ERV1 9026 NM_001331036 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 5217 chr11 45265104 45265158 + 0 NA intron (NM_001247987, intron 2 of 7) L1ME2z|LINE|L1 21202 NM_020826 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 30779 chrX 65668547 65668651 + 0 NA intron (NM_002444, intron 1 of 12) intron (NM_002444, intron 1 of 12) 955 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 2415 chr1 202591103 202591216 + 0 NA 3' UTR (NM_001136504, exon 9 of 9) 3' UTR (NM_001136504, exon 9 of 9) 51045 NM_001197131 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 26479 chr7 79283448 79283494 + 0 NA intron (NM_012301, intron 1 of 21) MLT1L|LTR|ERVL-MaLR -169486 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 25395 chr6 156948999 156949103 + 0 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -169320 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 3286 chr10 11882166 11882310 + 0 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 12472 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 4764 chr11 7600428 7600557 + 0 NA intron (NM_001256568, intron 2 of 20) intron (NM_001256568, intron 2 of 20) 3306 NM_001256568 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 16636 chr2 170525634 170525660 + 0 NA intron (NR_045682, intron 31 of 35) intron (NR_045682, intron 31 of 35) -174704 NR_110576 101929753 Hs.534101 NR_110576 LOC101929753 - uncharacterized LOC101929753 ncRNA 12585 chr17 45310843 45310939 + 0 NA intron (NM_003954, intron 1 of 15) intron (NM_003954, intron 1 of 15) 6173 NM_003954 9020 Hs.404183 NM_003954 ENSG00000006062 MAP3K14 FTDCR1B|HS|HSNIK|NIK mitogen-activated protein kinase kinase kinase 14 protein-coding 23648 chr5 160421723 160421883 + 0 NA promoter-TSS (NM_001282383) promoter-TSS (NM_001282383) -4 NM_004219 9232 Hs.350966 NM_004219 ENSG00000164611 PTTG1 EAP1|HPTTG|PTTG|TUTR1 pituitary tumor-transforming 1 protein-coding 15269 chr2 28640078 28640156 + 0 NA intron (NR_138141, intron 34 of 35) intron (NR_138141, intron 34 of 35) 73760 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 15360 chr2 37231690 37231794 + 0 NA promoter-TSS (NM_005760) promoter-TSS (NM_005760) 111 NM_001083946 55471 Hs.433466 NM_018607 ENSG00000003509 NDUFAF7 C2orf56|MidA|PRO1853 NADH:ubiquinone oxidoreductase complex assembly factor 7 protein-coding 856 chr1 50474957 50475061 + 0 NA intron (NM_007051, intron 18 of 18) L3|LINE|CR1 -51562 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 1664 chr1 148951999 148952153 + 0 NA promoter-TSS (NM_001002811) promoter-TSS (NM_001002811) -48 NM_001002811 9659 Hs.584841 NM_014644 ENSG00000178104 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 9217 chr14 64987070 64987209 + 0 NA intron (NM_002028, intron 1 of 11) CpG 350 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 13512 chr18 46387838 46388060 + 0 NA intron (NM_001256758, intron 1 of 5) MER117|DNA|hAT-Charlie 53725 NM_001256758 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 3211 chr10 4726038 4726060 + 0 NA Intergenic Intergenic -47979 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 LINC00704 - long intergenic non-protein coding RNA 704 ncRNA 191 chr1 13749316 13749466 + 0 NA promoter-TSS (NM_001007257) promoter-TSS (NM_001007257) 10 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 29653 chr9 97876867 97876992 + 0 NA Intergenic Intergenic 23674 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 24448 chr6 35452283 35452337 + 0 NA promoter-TSS (NM_021922) promoter-TSS (NM_021922) -51 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE Fanconi anemia complementation group E protein-coding 20765 chr3 181915793 181915944 + 0 NA Intergenic Intergenic -36496 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 11191 chr16 29290962 29291114 + 0 NA Intergenic Intergenic -11249 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RUNDC2C sorting nexin 29 pseudogene 2 pseudo 24304 chr6 29887345 29887462 + 0 NA promoter-TSS (NR_001434) promoter-TSS (NR_001434) -170 NR_001434 3136 Hs.728808 NR_001434 HLA-H HLAHP major histocompatibility complex, class I, H (pseudogene) pseudo 3612 chr10 43138484 43138588 + 0 NA promoter-TSS (NM_018590) promoter-TSS (NM_018590) 91 NM_018590 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 11524 chr16 68245264 68245272 + 0 NA promoter-TSS (NM_012320) promoter-TSS (NM_012320) -76 NM_012320 23659 Hs.632199 NM_012320 ENSG00000103066 PLA2G15 ACS|GXVPLA2|LLPL|LPLA2|LYPLA3 phospholipase A2 group XV protein-coding 21013 chr3 194141758 194141847 + 0 NA Intergenic CpG 5660 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 262 chr1 17475844 17476007 + 0 NA Intergenic Intergenic -36171 NM_018715 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 13553 chr18 49561815 49561919 + 0 NA promoter-TSS (NM_001308006) promoter-TSS (NM_001308006) -164 NM_006033 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 1944 chr1 162069623 162069772 + 0 NA promoter-TSS (NM_001164757) promoter-TSS (NM_001164757) -94 NM_001164757 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 9694 chr14 102065737 102065841 + 0 NA Intergenic Intergenic 21386 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 29184 chr9 71626648 71626752 + 0 NA Intergenic L2b|LINE|L2 142184 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 6959 chr12 48957478 48957653 + 0 NA promoter-TSS (NM_001659) promoter-TSS (NM_001659) -96 NM_001659 377 Hs.119177 NM_001659 ENSG00000134287 ARF3 - ADP ribosylation factor 3 protein-coding 26879 chr7 116631061 116631161 + 0 NA Intergenic Intergenic -16291 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 13077 chr17 78735940 78736044 + 0 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) -12242 NM_001292018 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 10458 chr15 75036410 75036427 + 0 NA intron (NM_001301103, intron 2 of 3) intron (NM_001301103, intron 2 of 3) -6851 NM_001301104 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 26753 chr7 103344737 103344841 + 0 NA promoter-TSS (NM_001129887) promoter-TSS (NM_001129887) 84 NM_014377 27000 Hs.558476 NM_014377 ENSG00000105821 DNAJC2 MPHOSPH11|MPP11|ZRF1|ZUO1 DnaJ heat shock protein family (Hsp40) member C2 protein-coding 11562 chr16 69513627 69513662 + 0 NA Intergenic Intergenic 52224 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 27474 chr8 19096036 19096140 + 0 NA Intergenic Intergenic -82402 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 6109 chr11 113859717 113859851 + 0 NA intron (NM_001346258, intron 1 of 23) intron (NM_001346258, intron 1 of 23) 15786 NM_001346259 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 25948 chr7 29113845 29113918 + 0 NA intron (NM_019029, intron 2 of 12) intron (NM_019029, intron 2 of 12) -11152 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000106069 LOC101928168 - uncharacterized LOC101928168 ncRNA 12197 chr17 19508086 19508201 + 0 NA Intergenic Intergenic -25711 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 21852 chr4 143346364 143346468 + 0 NA intron (NM_207123, intron 1 of 10) intron (NM_207123, intron 1 of 10) 2956 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 23613 chr5 158084509 158084613 + 0 NA Intergenic Intergenic -225386 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 22732 chr5 74643349 74643513 + 0 NA intron (NM_001292004, intron 1 of 13) intron (NM_001292004, intron 1 of 13) -2007 NM_003633 8507 Hs.104925 NM_003633 ENSG00000171617 ENC1 CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10 ectodermal-neural cortex 1 protein-coding 2476 chr1 205227834 205227938 + 0 NA promoter-TSS (NM_014858) promoter-TSS (NM_014858) -24 NM_014858 9911 Hs.6360 NM_014858 ENSG00000133069 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 26821 chr7 111364464 111364619 + 0 NA intron (NM_032549, intron 3 of 5) AluSx4|SINE|Alu 197750 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 16974 chr2 206559478 206559568 + 0 NA intron (NM_003812, intron 10 of 25) intron (NM_003812, intron 10 of 25) -84704 NM_001102659 200726 NM_001102659 ENSG00000235118 LOC200726 - hCG1657980 protein-coding 1921 chr1 161021192 161021360 + 0 NA promoter-TSS (NM_016946) promoter-TSS (NM_016946) 67 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 27312 chr8 802040 802186 + 0 NA intron (NM_001346810, intron 1 of 14) intron (NM_001346810, intron 1 of 14) 63565 NR_134292 401442 Hs.678992 NR_134292 ENSG00000282375 LOC401442 - uncharacterized LOC401442 ncRNA 3217 chr10 5412440 5412606 + 0 NA promoter-TSS (NM_001047160) promoter-TSS (NM_001047160) -28 NM_001047160 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 29172 chr9 70902810 70902914 + 0 NA intron (NM_001007471, intron 1 of 24) intron (NM_001007471, intron 1 of 24) -33804 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 25921 chr7 27169169 27169273 + 0 NA TTS (NR_029911) TTS (NR_029911) 322 NR_046609 100874323 Hs.716765 NR_046609 ENSG00000253187 HOXA10-AS HOXA-AS4 HOXA10 antisense RNA ncRNA 14001 chr19 6373515 6373577 + 0 NA intron (NM_032306, intron 1 of 3) CpG 1113 NM_032306 84266 Hs.111099 NM_032306 ENSG00000125652 ALKBH7 ABH7|SPATA11|UNQ6002 alkB homolog 7 protein-coding 17385 chr2 240320491 240320542 + 0 NA Intergenic Intergenic -115182 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 10134 chr15 55217704 55217851 + 0 NA intron (NM_183235, intron 6 of 6) intron (NM_183235, intron 6 of 6) -20744 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 15744 chr2 69601251 69601394 + 0 NA intron (NM_014911, intron 2 of 21) intron (NM_014911, intron 2 of 21) -42483 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 18402 chr20 63682610 63682763 + 0 NA intron (NM_001283010, intron 13 of 33) intron (NM_001283010, intron 13 of 33) -13965 NM_003823 8771 Hs.434878 NM_003823 ENSG00000243509 TNFRSF6B DCR3|DJ583P15.1.1|M68|M68E|TR6 TNF receptor superfamily member 6b protein-coding 7409 chr12 91009365 91009469 + 0 NA Intergenic Intergenic -4391 NM_004950 1833 Hs.435680 NM_004950 ENSG00000083782 EPYC DSPG3|PGLB|Pg-Lb|SLRR3B epiphycan protein-coding 21723 chr4 114563550 114563613 + 0 NA Intergenic Intergenic -34821 NM_001128174 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 7502 chr12 98645133 98645283 + 0 NA promoter-TSS (NM_201612) promoter-TSS (NM_201612) -92 NM_181868 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 9460 chr14 80638655 80638741 + 0 NA intron (NM_152446, intron 18 of 23) L2a|LINE|L2 300842 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 1229 chr1 86546934 86546981 + 0 NA promoter-TSS (NM_012128) promoter-TSS (NM_012128) -119 NR_024602 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 24271 chr6 28104725 28104859 + 0 NA Intergenic CpG 13985 NR_024063 221584 Hs.634723 NR_024063 ZSCAN12P1 ZNF187p1|ZNF305P1|ZNF96L1|ZNF96P1|ZSCAN12L1|dJ313I6.7 zinc finger and SCAN domain containing 12 pseudogene 1 pseudo 25020 chr6 111573202 111573306 + 0 NA intron (NM_147200, intron 5 of 9) intron (NM_147200, intron 5 of 9) -5894 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 22081 chr4 183659164 183659299 + 0 NA promoter-TSS (NM_001307922) promoter-TSS (NM_001307922) -12 NM_001307922 201965 Hs.133337 NM_152682 ENSG00000182552 RWDD4 FAM28A|RWDD4A RWD domain containing 4 protein-coding 1001 chr1 63317067 63317209 + 0 NA non-coding (NR_038252, exon 1 of 12) non-coding (NR_038252, exon 1 of 12) 119 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 24961 chr6 105403193 105403255 + 0 NA promoter-TSS (NM_002726) promoter-TSS (NM_002726) -100 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 30858 chrX 80809948 80810074 + 0 NA promoter-TSS (NM_153252) promoter-TSS (NM_153252) -277 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 27339 chr8 6909874 6909903 + 0 NA Intergenic Intergenic 16188 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin alpha 6 protein-coding 25990 chr7 32204502 32204606 + 0 NA intron (NM_001322059, intron 2 of 17) intron (NM_001322059, intron 2 of 17) 94850 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 225 chr1 16164383 16164511 + 0 NA Intergenic MIR|SINE|MIR -8338 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 28126 chr8 85589725 85589829 + 0 NA Intergenic MER50|LTR|ERV1 65899 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 16949 chr2 203687266 203687370 + 0 NA Intergenic Intergenic -19157 NM_006139 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 10450 chr15 74818759 74818863 + 0 NA exon (NM_021819, exon 5 of 14) exon (NM_021819, exon 5 of 14) 5958 NM_021819 79748 Hs.620644 NM_021819 ENSG00000140506 LMAN1L ERGIC-53L|ERGL lectin, mannose binding 1 like protein-coding 12949 chr17 72540284 72540388 + 0 NA intron (NR_137281, intron 1 of 4) intron (NR_137281, intron 1 of 4) 52468 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 16069 chr2 105455681 105455737 + 0 NA Intergenic Intergenic -16936 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 14226 chr19 16734069 16734181 + 0 NA intron (NM_001007525, intron 3 of 18) intron (NM_001007525, intron 3 of 18) 2933 NM_001347994 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 25978 chr7 30799720 30799822 + 0 NA intron (NR_037598, intron 7 of 19) LTR16A1|LTR|ERVL 28354 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 FAM188B C7orf67 family with sequence similarity 188 member B protein-coding 24333 chr6 30687395 30687499 + 0 NA promoter-TSS (NM_001134870).4 promoter-TSS (NM_001134870).4 -131 NM_001134870 170954 Hs.101150 NM_133471 ENSG00000146112 PPP1R18 HKMT1098|KIAA1949 protein phosphatase 1 regulatory subunit 18 protein-coding 13172 chr17 82494606 82494710 + 0 NA Intergenic Intergenic -25060 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 8190 chr13 43879510 43879664 + 0 NA promoter-TSS (NM_153218) promoter-TSS (NM_153218) 103 NM_144974 160857 Hs.170849 NM_144974 ENSG00000151773 CCDC122 - coiled-coil domain containing 122 protein-coding 7202 chr12 62732092 62732247 + 0 NA intron (NM_020700, intron 5 of 9) intron (NM_020700, intron 5 of 9) 128483 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 8667 chr14 20477716 20477793 + 0 NA 3' UTR (NM_000270, exon 6 of 6) 3' UTR (NM_000270, exon 6 of 6) 8375 NM_000270 4860 Hs.75514 NM_000270 ENSG00000198805 PNP NP|PRO1837|PUNP purine nucleoside phosphorylase protein-coding 24344 chr6 30810977 30811078 + 0 NA Intergenic MER74A|LTR|ERVL 19632 NR_130726 401247 NR_130726 ENSG00000214894 LINC00243 C6orf214|NCRNA00243 long intergenic non-protein coding RNA 243 ncRNA 18702 chr22 24593102 24593185 + 0 NA promoter-TSS (NM_207644) promoter-TSS (NM_207644) -75 NM_207644 388886 Hs.113314 NM_207644 ENSG00000178026 LRRC75B C22orf36|FAM211B leucine rich repeat containing 75B protein-coding 28981 chr9 21711674 21711778 + 0 NA Intergenic Intergenic -90910 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 25126 chr6 127266733 127266819 + 0 NA promoter-TSS (NM_001242848) promoter-TSS (NM_001242848) 38 NM_001242849 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 26329 chr7 64307315 64307459 + 0 NA Intergenic CpG -6486 NM_001294255 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 3170 chr10 931751 931881 + 0 NA promoter-TSS (NM_015155) promoter-TSS (NM_015155) -111 NM_015155 23185 Hs.159069 NM_015155 ENSG00000107929 LARP4B KIAA0217|LARP5 La ribonucleoprotein domain family member 4B protein-coding 10537 chr15 80580210 80580264 + 0 NA promoter-TSS (NR_049837) promoter-TSS (NR_049837) -866 NR_049837 100847042 NR_049837 ENSG00000172379 MIR5572 - microRNA 5572 ncRNA 20119 chr3 129211950 129212127 + 0 NA Intergenic Intergenic -28071 NM_003418 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 5288 chr11 57901802 57901906 + 0 NA Intergenic Intergenic -122027 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 21111 chr4 1856192 1856296 + 0 NA promoter-TSS (NM_012318) promoter-TSS (NM_012318) 3 NM_012318 3954 Hs.120165 NM_012318 ENSG00000168924 LETM1 - leucine zipper and EF-hand containing transmembrane protein 1 protein-coding 14780 chr19 54173118 54173262 + 0 NA promoter-TSS (NM_144686).3 promoter-TSS (NM_144686).3 60 NM_001145303 147798 Hs.355126 NM_144686 ENSG00000167608 TMC4 - transmembrane channel like 4 protein-coding 19654 chr3 70982919 70983144 + 0 NA intron (NM_032682, intron 14 of 20) intron (NM_032682, intron 14 of 20) 81892 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 3923 chr10 75210756 75210860 + 0 NA 5' UTR (NM_001324087, exon 2 of 12) 5' UTR (NM_001324087, exon 2 of 12) 654 NM_001324087 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 3730 chr10 59965503 59965654 + 0 NA Intergenic LTR81C|LTR|Gypsy -4665 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 3135 chr1 246507186 246507290 + 0 NA 5' UTR (NM_001167740, exon 1 of 12) 5' UTR (NM_001167740, exon 1 of 12) 104 NM_001167740 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 19772 chr3 101573945 101574084 + 0 NA promoter-TSS (NM_001320401) promoter-TSS (NM_001320401) -80 NR_135226 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 4356 chr10 110865651 110865672 + 0 NA Intergenic Intergenic 5243 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 8891 chr14 36767723 36767781 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 110184 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 26882 chr7 116679557 116679747 + 0 NA intron (NM_001324402, intron 1 of 19) intron (NM_001324402, intron 1 of 19) 7262 NM_001324401 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 14369 chr19 35319207 35319368 + 0 NA Intergenic Intergenic -9879 NM_001278417 933 Hs.579691 NM_001771 ENSG00000012124 CD22 SIGLEC-2|SIGLEC2 CD22 molecule protein-coding 19963 chr3 118479007 118479074 + 0 NA Intergenic MER41B|LTR|ERV1 -162728 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 28974 chr9 20618556 20618709 + 0 NA intron (NM_001286691, intron 2 of 10) intron (NM_001286691, intron 2 of 10) 3355 NM_001286691 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3, super elongation complex subunit protein-coding 26486 chr7 80134570 80134674 + 0 NA promoter-TSS (NM_002069) promoter-TSS (NM_002069) -202 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 23834 chr5 180313811 180313945 + 0 NA exon (NM_005110, exon 14 of 19) exon (NM_005110, exon 14 of 19) -21807 NM_139068 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 2774 chr1 222712129 222712233 + 0 NA promoter-TSS (NR_109927) promoter-TSS (NR_109927) 341 NM_022831 64853 Hs.156625 NM_022831 ENSG00000186063 AIDA C1orf80 axin interactor, dorsalization associated protein-coding 25496 chr6 169452168 169452272 + 0 NA Intergenic CpG -198106 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 18659 chr22 20885678 20885768 + 0 NA intron (NM_004782, intron 4 of 4) intron (NM_004782, intron 4 of 4) 26719 NM_004782 9342 Hs.108002 NM_004782 ENSG00000099940 SNAP29 CEDNIK|SNAP-29 synaptosome associated protein 29 protein-coding 6017 chr11 107561864 107561968 + 0 NA intron (NM_001301010, intron 1 of 11) intron (NM_001301010, intron 1 of 11) 3819 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9 alkB homolog 8, tRNA methyltransferase protein-coding 6716 chr12 19428396 19428500 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -11226 NM_001114176 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 14475 chr19 41364100 41364203 + 0 NA promoter-TSS (NM_030578) promoter-TSS (NM_030578) 22 NM_030578 80776 Hs.567596 NM_030578 ENSG00000123810 B9D2 ICIS-1|MKS10|MKSR2 B9 protein domain 2 protein-coding 22071 chr4 182925414 182925518 + 0 NA Intergenic Intergenic -7989 NM_001012732 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 6815 chr12 30795210 30795322 + 0 NA promoter-TSS (NR_040245) promoter-TSS (NR_040245) -415 NR_040245 100287314 Hs.355210 NR_040245 ENSG00000235884 LINC00941 - long intergenic non-protein coding RNA 941 ncRNA 15759 chr2 70142396 70142584 + 0 NA Intergenic CpG -17174 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 30659 chrX 46759395 46759514 + 0 NA promoter-TSS (NM_001257291) promoter-TSS (NM_001257291) -282 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 24153 chr6 19472259 19472483 + 0 NA Intergenic Intergenic 22550 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 19999 chr3 120170321 120170425 + 0 NA intron (NM_153002, intron 8 of 8) intron (NM_153002, intron 8 of 8) 73922 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 1485 chr1 110004016 110004093 + 0 NA 5' UTR (NM_001242676, exon 1 of 17) 5' UTR (NM_001242676, exon 1 of 17) 106 NM_001242675 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 12068 chr17 8173463 8173600 + 0 NA promoter-TSS (NR_033294) promoter-TSS (NR_033294) 57 NR_033294 727676 NR_033294 ENSG00000200463 SNORD118 LCC|U8 small nucleolar RNA, C/D box 118 snoRNA 18881 chr22 37905183 37905342 + 0 NA promoter-TSS (NM_033386) promoter-TSS (NM_033386) -886 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 27878 chr8 56322925 56323029 + 0 NA Intergenic HAL1ME|LINE|L1 -2201 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 16816 chr2 190343515 190343653 + 0 NA 5' UTR (NM_001128928, exon 1 of 7) 5' UTR (NM_001128928, exon 1 of 7) 114 NM_002194 3628 Hs.32309 NM_002194 ENSG00000151689 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 6592 chr12 10212804 10212952 + 0 NA promoter-TSS (NM_031412) promoter-TSS (NM_031412) -12 NM_031412 23710 Hs.524250 NM_031412 ENSG00000139112 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA type A receptor associated protein like 1 protein-coding 21828 chr4 139453662 139453825 + 0 NA promoter-TSS (NM_031296) promoter-TSS (NM_031296) -64 NM_031296 83452 Hs.591679 NM_031296 ENSG00000172007 RAB33B SMC2 RAB33B, member RAS oncogene family protein-coding 278 chr1 19210288 19210420 + 0 NA promoter-TSS (NM_020765) promoter-TSS (NM_020765) -32 NR_135114 101927895 Hs.660534 NR_135114 ENSG00000230424 LOC101927895 - uncharacterized LOC101927895 ncRNA 12687 chr17 50866578 50866716 + 0 NA promoter-TSS (NR_038458) promoter-TSS (NR_038458) -32 NR_038458 400604 Hs.641441 NR_038458 ENSG00000229980 TOB1-AS1 - TOB1 antisense RNA 1 ncRNA 13179 chr17 82698739 82698877 + 0 NA promoter-TSS (NM_006822) promoter-TSS (NM_006822) -86 NM_006822 10966 Hs.484068 NM_006822 ENSG00000141542 RAB40B RAR|SEC4L RAB40B, member RAS oncogene family protein-coding 22414 chr5 39255548 39255652 + 0 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) 15057 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB ADAP|PRO0823|SLAP-130|SLAP130 FYN binding protein protein-coding 15806 chr2 73385764 73385791 + 0 NA promoter-TSS (NM_015120) promoter-TSS (NM_015120) 19 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1, centrosome and basal body associated protein protein-coding 5760 chr11 83286306 83286489 + 0 NA promoter-TSS (NM_001286116) promoter-TSS (NM_001286116) 10 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 2626 chr1 212234753 212234857 + 0 NA promoter-TSS (NR_125982) promoter-TSS (NR_125982) -69 NR_125983 101929541 Hs.632493 NR_125982 ENSG00000226251 LOC101929541 - uncharacterized LOC101929541 ncRNA 9044 chr14 54902790 54902906 + 0 NA promoter-TSS (NM_000161) promoter-TSS (NM_000161) -24 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 22274 chr5 16690336 16690510 + 0 NA intron (NM_012334, intron 27 of 40) intron (NM_012334, intron 27 of 40) -73365 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 FAM134B JK-1|JK1 family with sequence similarity 134 member B protein-coding 7361 chr12 86660906 86661010 + 0 NA intron (NM_013244, intron 1 of 6) L4_A_Mam|LINE|RTE-X 177946 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 30190 chr9 128558712 128558811 + 0 NA intron (NM_003127, intron 1 of 55) intron (NM_003127, intron 1 of 55) 6203 NM_001195532 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 24207 chr6 25962697 25962794 + 0 NA promoter-TSS (NM_006355) promoter-TSS (NM_006355) 56 NM_006355 10475 Hs.584851 NM_006355 ENSG00000112343 TRIM38 RNF15|RORET tripartite motif containing 38 protein-coding 21086 chr3 197749672 197749815 + 0 NA promoter-TSS (NM_001145642) promoter-TSS (NM_001145642) -10 NM_032288 84248 Hs.277533 NM_032288 ENSG00000122068 FYTTD1 UIF forty-two-three domain containing 1 protein-coding 9081 chr14 56666807 56666951 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 87086 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101 transmembrane protein 260 protein-coding 27747 chr8 42290307 42290460 + 0 NA intron (NM_001190720, intron 3 of 20) intron (NM_001190720, intron 3 of 20) 19081 NR_033818 3551 Hs.597664 NM_001556 ENSG00000104365 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of nuclear factor kappa B kinase subunit beta protein-coding 1562 chr1 115497316 115497420 + 0 NA Intergenic MER77B|LTR|ERVL -144585 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 13781 chr18 74597811 74597931 + 0 NA promoter-TSS (NR_024484) promoter-TSS (NR_024484) -36 NR_024484 400657 Hs.61508 NM_001008234 ENSG00000264247 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 22931 chr5 96808373 96808508 + 0 NA promoter-TSS (NM_016442) promoter-TSS (NM_016442) -251 NM_016442 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 10016 chr15 45129864 45129895 + 0 NA promoter-TSS (NM_175940) promoter-TSS (NM_175940) -2 NM_001276268 90527 Hs.356664 NM_144565 ENSG00000140254 DUOXA1 NIP|NUMBIP|mol dual oxidase maturation factor 1 protein-coding 3647 chr10 47396396 47396513 + 0 NA Intergenic L1MB4|LINE|L1 -10711 NR_134500 107001062 Hs.576719 NR_134500 LOC107001062 - uncharacterized LOC107001062 ncRNA 14437 chr19 39167667 39167749 + 0 NA intron (NM_001014834, intron 1 of 7) intron (NM_001014834, intron 1 of 7) -29256 NM_001001414 342897 Hs.726934 NM_001001414 ENSG00000188505 NCCRP1 FBXO50|NCCRP-1 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) protein-coding 16139 chr2 112033211 112033314 + 0 NA Intergenic Intergenic -21961 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 17862 chr20 32207697 32207860 + 0 NA promoter-TSS (NM_172236) promoter-TSS (NM_172236) -35 NM_002657 5326 Hs.154104 NM_002657 ENSG00000126003 PLAGL2 ZNF900 PLAG1 like zinc finger 2 protein-coding 2281 chr1 193437926 193438076 + 0 NA Intergenic L1M1|LINE|L1 133256 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 6874 chr12 39505098 39505202 + 0 NA Intergenic Intergenic -61760 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 1486 chr1 110004174 110004212 + 0 NA 5' UTR (NM_001242676, exon 1 of 17) 5' UTR (NM_001242676, exon 1 of 17) 245 NM_001242675 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 425 chr1 26531237 26531398 + 0 NA intron (NM_002953, intron 1 of 21) intron (NM_002953, intron 1 of 21) 1559 NM_002953 6195 Hs.149957 NM_002953 ENSG00000117676 RPS6KA1 HU-1|MAPKAPK1A|RSK|RSK1|p90Rsk ribosomal protein S6 kinase A1 protein-coding 10889 chr16 2459933 2460126 + 0 NA promoter-TSS (NM_025108) promoter-TSS (NM_025108) -85 NM_025108 80178 Hs.534491 NM_025108 ENSG00000162062 C16orf59 - chromosome 16 open reading frame 59 protein-coding 24435 chr6 34745386 34745540 + 0 NA Intergenic Intergenic -11631 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 5223 chr11 45843269 45843298 + 0 NA Intergenic Intergenic -3835 NM_001127457 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian clock 2 protein-coding 2876 chr1 227885880 227885984 + 0 NA Intergenic Intergenic 55751 NR_049806 100847072 NR_049806 ENSG00000264483 MIR5008 - microRNA 5008 ncRNA 10114 chr15 52252910 52253014 + 0 NA intron (NM_018728, intron 12 of 40) MamGypsy2-I|LTR|Gypsy 24238 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 21922 chr4 153466337 153466441 + 0 NA promoter-TSS (NM_001131007) promoter-TSS (NM_001131007) 43 NM_001131007 23240 Hs.732450 NM_015196 ENSG00000121210 KIAA0922 TMEM131L KIAA0922 protein-coding 6889 chr12 42238294 42238438 + 0 NA promoter-TSS (NM_001320080) promoter-TSS (NM_001320080) 2 NM_001320080 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 5589 chr11 69122845 69122993 + 0 NA Intergenic Intergenic 39743 NR_036122 100422846 NR_036122 ENSG00000265539 MIR3164 - microRNA 3164 ncRNA 26815 chr7 110387054 110387178 + 0 NA Intergenic Intergenic -426903 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 2782 chr1 223143097 223143182 + 0 NA intron (NM_003268, intron 1 of 5) CpG 143 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 11023 chr16 11659297 11659401 + 0 NA Intergenic Intergenic -9084 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 11580 chr16 70694065 70694169 + 0 NA intron (NM_018052, intron 17 of 18) intron (NM_018052, intron 17 of 18) -8066 NM_138383 92154 Hs.432387 NM_138383 ENSG00000132613 MTSS1L ABBA|ABBA-1|ABBA1 MTSS1L, I-BAR domain containing protein-coding 19606 chr3 58874462 58874566 + 0 NA intron (NM_198463, intron 7 of 15) L2b|LINE|L2 50043 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 22846 chr5 88268875 88269025 + 0 NA promoter-TSS (NM_001289007) promoter-TSS (NM_001289007) -66 NR_105019 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 8297 chr13 52415108 52415212 + 0 NA 3' UTR (NM_001282169, exon 14 of 14) 3' UTR (NM_001282169, exon 14 of 14) -8666 NM_199263 55901 Hs.325667 NM_018676 ENSG00000136114 THSD1 TMTSP|UNQ3010 thrombospondin type 1 domain containing 1 protein-coding 14005 chr19 6516947 6517106 + 0 NA Intergenic Intergenic -13973 NM_003811 8744 Hs.1524 NM_003811 ENSG00000125657 TNFSF9 4-1BB-L|CD137L|TNLG5A tumor necrosis factor superfamily member 9 protein-coding 532 chr1 31788609 31788742 + 0 NA Intergenic CpG -24612 NM_001294335 576 Hs.524138 NM_001703 ENSG00000121753 ADGRB2 BAI2 adhesion G protein-coupled receptor B2 protein-coding 1193 chr1 84690573 84690677 + 0 NA promoter-TSS (NM_001166417) promoter-TSS (NM_001166417) -68 NM_014021 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 28915 chr9 6413046 6413190 + 0 NA promoter-TSS (NM_152896) promoter-TSS (NM_152896) -33 NM_152896 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 3963 chr10 78973710 78973720 + 0 NA intron (NR_015429, intron 3 of 7) CpG 93733 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 2455 chr1 204226038 204226102 + 0 NA intron (NM_014935, intron 21 of 22) intron (NM_014935, intron 21 of 22) -11978 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 55 chr1 3501948 3502052 + 0 NA intron (NM_001409, intron 17 of 36) intron (NM_001409, intron 17 of 36) 47417 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 13763 chr18 70433988 70434092 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR -49449 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 26977 chr7 128476623 128476768 + 0 NA promoter-TSS (NM_018396) promoter-TSS (NM_018396) -34 NM_018396 55798 Hs.433213 NM_018396 ENSG00000165055 METTL2B METL|METTL2|METTL2A|PSENIP1 methyltransferase like 2B protein-coding 16027 chr2 101185767 101185871 + 0 NA Intergenic Intergenic 34159 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 6134 chr11 117089894 117089947 + 0 NA intron (NM_025164, intron 1 of 23) intron (NM_025164, intron 1 of 23) 8495 NM_025164 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SIK-3 SIK family kinase 3 protein-coding 12845 chr17 64263346 64263531 + 0 NA promoter-TSS (NM_001288732) promoter-TSS (NM_001288732) -115 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 11291 chr16 47462054 47462158 + 0 NA promoter-TSS (NM_001305002) promoter-TSS (NM_001305002) 807 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 6434 chr12 752358 752510 + 0 NA promoter-TSS (NM_001184985) promoter-TSS (NM_001184985) -489 NM_001184985 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 20558 chr3 160869894 160870039 + 0 NA promoter-TSS (NR_134243) promoter-TSS (NR_134243) -632 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 18056 chr20 44177163 44177267 + 0 NA 3' UTR (NM_175913, exon 2 of 2) 3' UTR (NM_175913, exon 2 of 2) 10363 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 30263 chr9 130712698 130712822 + 0 NA Intergenic CpG -1121 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 3584 chr10 36469725 36469829 + 0 NA Intergenic Intergenic -656080 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 24356 chr6 31203428 31203504 + 0 NA non-coding (NR_026791, exon 2 of 2) non-coding (NR_026791, exon 2 of 2) 5706 NR_026791 253018 Hs.659818 NR_026791 ENSG00000206344 HCG27 bCX101P6.9|bPG299F13.9|bQB115I13.2 HLA complex group 27 (non-protein coding) ncRNA 20305 chr3 142149459 142149586 + 0 NA promoter-TSS (NM_001178138) promoter-TSS (NM_001178138) 22 NM_001178139 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 16984 chr2 207220137 207220228 + 0 NA intron (NR_110283, intron 3 of 3) intron (NR_110283, intron 3 of 3) 34134 NR_110283 101927865 Hs.574609 NR_110283 LOC101927865 - uncharacterized LOC101927865 ncRNA 28094 chr8 81048008 81048112 + 0 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 64008 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 17103 chr2 218406354 218406458 + 0 NA TTS (NM_001206878) TTS (NM_001206878) 3760 NR_029500 407017 NR_029500 ENSG00000199121 MIR26B MIRN26B|hsa-mir-26b|miR-26b microRNA 26b ncRNA 21162 chr4 8428439 8428579 + 0 NA intron (NM_001101667, intron 1 of 16) CpG 12216 NM_001101667 8310 Hs.479122 NM_003501 ENSG00000087008 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 23420 chr5 144170673 144170810 + 0 NA promoter-TSS (NM_001024947) promoter-TSS (NM_001024947) -27 NM_001024947 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 11621 chr16 74368203 74368352 + 0 NA promoter-TSS (NR_026950) promoter-TSS (NR_026950) -22 NR_026950 283922 Hs.558726 NR_026950 ENSG00000214331 LOC283922 - pyruvate dehydrogenase phosphatase regulatory subunit pseudogene pseudo 9954 chr15 41276973 41277092 + 0 NA intron (NM_007236, intron 5 of 6) MLT1J|LTR|ERVL-MaLR -6971 NR_026757 729082 Hs.380164 NR_026757 OIP5-AS1 cyrano OIP5 antisense RNA 1 ncRNA 25706 chr7 13779128 13779202 + 0 NA Intergenic LTR16A|LTR|ERVL 207349 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 7982 chr13 24512724 24512828 + 0 NA promoter-TSS (NM_006437) promoter-TSS (NM_006437) 34 NM_006437 143 Hs.744855 NM_006437 ENSG00000102699 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly(ADP-ribose) polymerase family member 4 protein-coding 15719 chr2 68252599 68252750 + 0 NA promoter-TSS (NM_000945) promoter-TSS (NM_000945) -155 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 30395 chr9 137605210 137605343 + 0 NA promoter-TSS (NM_001317968) promoter-TSS (NM_001317968) -364 NM_001317968 92714 Hs.12999 NM_152285 ENSG00000197070 ARRDC1 - arrestin domain containing 1 protein-coding 19500 chr3 49723958 49724101 + 0 NA promoter-TSS (NM_013334) promoter-TSS (NM_013334) -55 NM_021971 29925 Hs.567488 NM_013334 ENSG00000173540 GMPPB MDDGA14|MDDGB14|MDDGC14 GDP-mannose pyrophosphorylase B protein-coding 12973 chr17 74430670 74430774 + 0 NA promoter-TSS (NM_022036) promoter-TSS (NM_022036) -806 NM_022036 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 23564 chr5 153619827 153619991 + 0 NA intron (NM_001258020, intron 3 of 16) MIR3|SINE|MIR 127737 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 7454 chr12 94660614 94660743 + 0 NA Intergenic L1MD2|LINE|L1 -10116 NM_020698 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 9187 chr14 63728031 63728063 + 0 NA promoter-TSS (NM_030791) promoter-TSS (NM_030791) 48 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 26065 chr7 36661661 36661739 + 0 NA intron (NM_001637, intron 3 of 20) intron (NM_001637, intron 3 of 20) -61580 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 14828 chr19 56121381 56121568 + 0 NA promoter-TSS (NM_001002836) promoter-TSS (NM_001002836) -101 NM_001002836 126208 Hs.397153 NM_001002836 ENSG00000142409 ZNF787 TIP20 zinc finger protein 787 protein-coding 18712 chr22 25120354 25120458 + 0 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -7714 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 28238 chr8 95268759 95268863 + 0 NA promoter-TSS (NR_038203) promoter-TSS (NR_038203) -25 NR_038206 100616530 Hs.554328 NR_038201 ENSG00000253773 C8orf37-AS1 - C8orf37 antisense RNA 1 ncRNA 26455 chr7 76393141 76393245 + 0 NA intron (NM_080744, intron 9 of 10) CpG -4331 NM_007155 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 21564 chr4 88178397 88178501 + 0 NA intron (NM_001257386, intron 1 of 15) L1MA4|LINE|L1 -19590 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 31043 chrX 128020892 128021037 + 0 NA Intergenic Intergenic 31439 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 13099 chr17 80147173 80147277 + 0 NA promoter-TSS (NM_014740) promoter-TSS (NM_014740) -42 NM_014740 9775 Hs.389649 NM_014740 ENSG00000141543 EIF4A3 DDX48|MUK34|NMP265|NUK34|RCPS|eIF4AIII eukaryotic translation initiation factor 4A3 protein-coding 24428 chr6 34319707 34319723 + 0 NA intron (NM_006703, intron 2 of 4) MER21A|LTR|ERVL -70607 NM_001287398 221491 Hs.381300 NM_178508 ENSG00000186577 C6orf1 LBH chromosome 6 open reading frame 1 protein-coding 26176 chr7 44735599 44735703 + 0 NA Intergenic L1MB8|LINE|L1 -12915 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 12910 chr17 69598569 69598673 + 0 NA intron (NR_109972, intron 2 of 4) intron (NR_109972, intron 2 of 4) 4634 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 15902 chr2 85468762 85468866 + 0 NA Intergenic Intergenic 49883 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 13703 chr18 63366454 63366481 + 0 NA intron (NM_002035, intron 1 of 9) intron (NM_002035, intron 1 of 9) 806 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 22763 chr5 77880072 77880237 + 0 NA Intergenic MIRb|SINE|MIR -4502 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 13545 chr18 49006935 49006960 + 0 NA Intergenic Intergenic 42821 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 22403 chr5 38845697 38845844 + 0 NA promoter-TSS (NM_001323504) promoter-TSS (NM_001323504) 59 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 5965 chr11 102226881 102227021 + 0 NA intron (NM_001130145, intron 7 of 8) intron (NM_001130145, intron 7 of 8) -90499 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 24508 chr6 38703105 38703241 + 0 NA promoter-TSS (NM_006708) promoter-TSS (NM_006708) 3 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 3348 chr10 17075630 17075734 + 0 NA intron (NM_001081, intron 17 of 66) L1ME4b|LINE|L1 54135 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 11439 chr16 58198081 58198229 + 0 NA promoter-TSS (NM_001896) promoter-TSS (NM_001896) -277 NM_001896 1459 Hs.82201 NM_001896 ENSG00000070770 CSNK2A2 CK2A2|CK2alpha'|CSNK2A1 casein kinase 2 alpha 2 protein-coding 1718 chr1 151548978 151549069 + 0 NA intron (NM_001126337, intron 1 of 11) intron (NM_001126337, intron 1 of 11) 3227 NR_030280 693139 NR_030280 ENSG00000207606 MIR554 MIRN554|hsa-mir-554 microRNA 554 ncRNA 1098 chr1 68975507 68975543 + 0 NA Intergenic Intergenic -478304 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 13447 chr18 36297569 36297673 + 0 NA promoter-TSS (NM_001281739) promoter-TSS (NM_001281739) -75 NM_025135 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 15398 chr2 39438039 39438143 + 0 NA promoter-TSS (NM_001270425) promoter-TSS (NM_001270425) 675 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 LOC728730 - uncharacterized LOC728730 ncRNA 26601 chr7 93043519 93043634 + 0 NA Intergenic CpG 74447 NM_001193307 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 28522 chr8 119919906 119919982 + 0 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 46289 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 13056 chr17 77255577 77255681 + 0 NA Intergenic Intergenic -25781 NM_001113491 10801 Hs.440932 NM_006640 ENSG00000184640 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 26850 chr7 114901878 114901982 + 0 NA Intergenic MLT2A2|LTR|ERVL -20224 NM_001166346 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC MyoD family inhibitor domain containing protein-coding 22428 chr5 40437749 40437853 + 0 NA Intergenic Intergenic -242129 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 3003 chr1 235012046 235012123 + 0 NA Intergenic Intergenic -48085 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 9849 chr15 34209811 34209915 + 0 NA intron (NM_024713, intron 1 of 9) CpG 233 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 11187 chr16 28925316 28925352 + 0 NA promoter-TSS (NM_024816) promoter-TSS (NM_024816) -123 NM_024816 79874 Hs.555978 NM_024816 ENSG00000177548 RABEP2 FRA rabaptin, RAB GTPase binding effector protein 2 protein-coding 14757 chr19 52923356 52923437 + 0 NA Intergenic CpG -5465 NM_001310127 388559 NM_001310127 ZNF888 - zinc finger protein 888 protein-coding 15052 chr2 13578731 13578835 + 0 NA Intergenic MIRb|SINE|MIR -571770 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 13116 chr17 81057180 81057337 + 0 NA intron (NM_006340, intron 2 of 14) intron (NM_006340, intron 2 of 14) 22111 NM_006340 10458 Hs.128316 NM_006340 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1 associated protein 2 protein-coding 23160 chr5 128083003 128083107 + 0 NA promoter-TSS (NM_001046) promoter-TSS (NM_001046) 19 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 14262 chr19 18292036 18292076 + 0 NA Intergenic CpG 9979 NR_036155 100422833 NR_036155 ENSG00000267959 MIR3188 mir-3188 microRNA 3188 ncRNA 15565 chr2 54904165 54904284 + 0 NA intron (NM_001039753, intron 23 of 40) intron (NM_001039753, intron 23 of 40) 106110 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 20685 chr3 175342367 175342471 + 0 NA intron (NM_207015, intron 5 of 13) intron (NM_207015, intron 5 of 13) -27121 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 30842 chrX 76427843 76427859 + 0 NA 5' UTR (NM_020932, exon 1 of 1) 5' UTR (NM_020932, exon 1 of 1) 198 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 23021 chr5 112228807 112228936 + 0 NA intron (NR_110559, intron 1 of 3) intron (NR_110559, intron 1 of 3) 588 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 28227 chr8 95024887 95025037 + 0 NA promoter-TSS (NM_152416) promoter-TSS (NM_152416) -13 NM_001330582 137682 Hs.729144 NM_152416 ENSG00000156170 NDUFAF6 C8orf38 NADH:ubiquinone oxidoreductase complex assembly factor 6 protein-coding 27579 chr8 26382907 26383032 + 0 NA promoter-TSS (NM_004331) promoter-TSS (NM_004331) -16 NR_144550 157489 Hs.586388 NR_144550 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 20535 chr3 159763614 159763768 + 0 NA intron (NM_001197108, intron 1 of 6) CpG 4921 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 11069 chr16 17552458 17552562 + 0 NA Intergenic Intergenic -81629 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 13001 chr17 75261596 75261621 + 0 NA promoter-TSS (NM_015971) promoter-TSS (NM_015971) 53 NM_014001 23163 Hs.87726 NM_014001 ENSG00000125447 GGA3 - golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding 27908 chr8 59786844 59786948 + 0 NA Intergenic MER34-int|LTR|ERV1 494527 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 14209 chr19 16070570 16070709 + 0 NA intron (NM_001145160, intron 1 of 8) MIRb|SINE|MIR 3132 NM_001145160 7171 Hs.631618 NM_003290 ENSG00000167460 TPM4 HEL-S-108 tropomyosin 4 protein-coding 28438 chr8 110894778 110894853 + 0 NA Intergenic LTR18B|LTR|ERVL 132618 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 7501 chr12 98636100 98636204 + 0 NA intron (NM_153687, intron 1 of 2) Tigger10|DNA|TcMar-Tigger 8899 NM_153687 121457 Hs.252543 NM_153687 ENSG00000166130 IKBIP IKIP IKBKB interacting protein protein-coding 14790 chr19 55063123 55063201 + 0 NA promoter-TSS (NM_001145971) promoter-TSS (NM_001145971) 55 NM_001145971 112724 Hs.327631 NM_138412 ENSG00000160439 RDH13 SDR7C3 retinol dehydrogenase 13 protein-coding 21727 chr4 115279395 115279499 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger -165571 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 10694 chr15 90336841 90336945 + 0 NA Intergenic LTR16D|LTR|ERVL 12554 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 31074 chrX 133085923 133086027 + 0 NA Intergenic MER6|DNA|TcMar-Tigger -57703 NM_031907 83844 Hs.333137 NM_031907 ENSG00000134588 USP26 - ubiquitin specific peptidase 26 protein-coding 1101 chr1 69110115 69110219 + 0 NA Intergenic Intergenic -457018 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 29482 chr9 88355277 88355394 + 0 NA Intergenic AluJo|SINE|Alu -33047 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 21500 chr4 81021565 81021669 + 0 NA Intergenic Intergenic -9348 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 16409 chr2 143034454 143034558 + 0 NA intron (NM_001199241, intron 13 of 14) intron (NM_001199241, intron 13 of 14) -94824 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 30893 chrX 103255200 103255304 + 0 NA promoter-TSS (NM_001006684) promoter-TSS (NM_001006684) -59 NM_001006684 90843 Hs.389734 NM_153333 ENSG00000180964 TCEAL8 WEX3 transcription elongation factor A like 8 protein-coding 11927 chr17 2786453 2786557 + 0 NA intron (NM_001330058, intron 1 of 24) intron (NM_001330058, intron 1 of 24) 9584 NM_001330058 23108 Hs.499659 NM_015085 ENSG00000132359 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 14481 chr19 41860023 41860160 + 0 NA promoter-TSS (NM_001321484) promoter-TSS (NM_001321484) 173 NM_001321485 6223 Hs.438429 NM_001022 ENSG00000105372 RPS19 DBA|DBA1|S19 ribosomal protein S19 protein-coding 6471 chr12 4148517 4148660 + 0 NA Intergenic Intergenic -125148 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 1165 chr1 81179385 81179544 + 0 NA Intergenic Intergenic 378238 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 9063 chr14 55454649 55454720 + 0 NA Intergenic Intergenic -14139 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 335 chr1 22172354 22172514 + 0 NA Intergenic Intergenic -29408 NM_030761 54361 Hs.25766 NM_030761 ENSG00000162552 WNT4 SERKAL|WNT-4 Wnt family member 4 protein-coding 23962 chr6 7236295 7236440 + 0 NA intron (NM_001003698, intron 10 of 11) intron (NM_001003698, intron 10 of 11) 76947 NM_001292008 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 17506 chr20 4502921 4502980 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR -183201 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 21302 chr4 39458951 39459064 + 0 NA promoter-TSS (NM_000661) promoter-TSS (NM_000661) -17 NM_194451 11019 Hs.550502 NM_006859 ENSG00000121897 LIAS HGCLAS|HUSSY-01|LAS|LIP1|LS|PDHLD lipoic acid synthetase protein-coding 3531 chr10 31940921 31941078 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -12123 NM_001270698 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 10938 chr16 4183906 4184026 + 0 NA Intergenic CpG 58114 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL - sarcalumenin protein-coding 22980 chr5 107456360 107456473 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 214479 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 18981 chr22 42922087 42922191 + 0 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) 24902 NM_007229 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 14091 chr19 10836147 10836287 + 0 NA promoter-TSS (NR_104015) promoter-TSS (NR_104015) 90 NM_006858 11018 Hs.211463 NM_006858 ENSG00000099203 TMED1 IL1RL1LG|Il1rl1l|Tp24|p24g1 transmembrane p24 trafficking protein 1 protein-coding 16384 chr2 138072417 138072539 + 0 NA Intergenic Intergenic -29406 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 28922 chr9 7799740 7799885 + 0 NA promoter-TSS (NM_001318059) promoter-TSS (NM_001318059) -6 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 TMEM261 C9orf123 transmembrane protein 261 protein-coding 9914 chr15 40098842 40098923 + 0 NA intron (NM_001003943, intron 3 of 3) intron (NM_001003943, intron 3 of 3) 7204 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 7685 chr12 113422229 113422363 + 0 NA promoter-TSS (NM_001304993) promoter-TSS (NM_001304993) -94 NM_001304993 113675 Hs.337594 NM_138432 ENSG00000139410 SDSL SDH 2|SDS-RS1|TDH|cSDH serine dehydratase like protein-coding 16658 chr2 172197003 172197149 + 0 NA Intergenic Intergenic 94070 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 21912 chr4 152536262 152536341 + 0 NA promoter-TSS (NR_039658) promoter-TSS (NR_039658) 37 NR_033797 54553 Hs.142307 NR_033797 ENSG00000268471 DKFZP434I0714 - uncharacterized protein DKFZP434I0714 ncRNA 30725 chrX 50828079 50828150 + 0 NA Intergenic L2c|LINE|L2 -14070 NM_020717 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP shroom family member 4 protein-coding 11999 chr17 6366439 6366486 + 0 NA Intergenic Intergenic 68670 NM_001285402 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 17480 chr20 3236021 3236125 + 0 NA intron (NM_001174089, intron 2 of 19) intron (NM_001174089, intron 2 of 19) 1654 NM_032034 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 19907 chr3 113536813 113536966 + 0 NA intron (NM_001322297, intron 1 of 24) intron (NM_001322297, intron 1 of 24) 4518 NM_001322299 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 18776 chr22 30207029 30207133 + 0 NA Intergenic Intergenic 39770 NM_001257135 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 16641 chr2 170816890 170816994 + 0 NA 5' UTR (NM_013445, exon 1 of 7) 5' UTR (NM_013445, exon 1 of 7) 252 NM_013445 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 16746 chr2 180003709 180003813 + 0 NA intron (NM_020943, intron 1 of 19) intron (NM_020943, intron 1 of 19) 3292 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 5756 chr11 83193654 83193787 + 0 NA promoter-TSS (NM_001300976) promoter-TSS (NM_001300976) -19 NM_001300973 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 30335 chr9 134357144 134357248 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) -22099 NM_001291920 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 15633 chr2 61854538 61854642 + 0 NA promoter-TSS (NM_001201543) promoter-TSS (NM_001201543) -447 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161 member A protein-coding 28153 chr8 88270070 88270074 + 0 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 57416 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 13028 chr17 75979474 75979634 + 0 NA promoter-TSS (NM_001185039) promoter-TSS (NM_001185039) -120 NM_001185039 51 Hs.464137 NM_004035 ENSG00000161533 ACOX1 ACOX|PALMCOX|SCOX acyl-CoA oxidase 1 protein-coding 2525 chr1 207316701 207316839 + 0 NA Intergenic Intergenic -4702 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 14177 chr19 14073727 14073850 + 0 NA TTS (NR_106715) TTS (NR_106715) 427 NR_106715 102466515 NR_106715 ENSG00000141854 MIR1199 hsa-mir-1199 microRNA 1199 ncRNA 14970 chr2 9631149 9631253 + 0 NA promoter-TSS (NM_006826) promoter-TSS (NM_006826) -146 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 26200 chr7 46253789 46253845 + 0 NA Intergenic MER4B|LTR|ERV1 -332545 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 18300 chr20 56765298 56765402 + 0 NA Intergenic Intergenic 136048 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 3513 chr10 30431605 30431674 + 0 NA Intergenic Intergenic -2382 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 14066 chr19 10194974 10195121 + 0 NA promoter-TSS (NM_001318730) promoter-TSS (NM_001318730) 7 NM_001318731 1786 Hs.202672 NM_001379 ENSG00000130816 DNMT1 ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI DNA methyltransferase 1 protein-coding 21335 chr4 48094008 48094112 + 0 NA intron (NM_003328, intron 8 of 14) intron (NM_003328, intron 8 of 14) 40196 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 12423 chr17 38752514 38752642 + 0 NA promoter-TSS (NM_002795) promoter-TSS (NM_002795) -135 NR_104194 5691 Hs.82793 NM_002795 ENSG00000277791 PSMB3 HC10-II proteasome subunit beta 3 protein-coding 17631 chr20 13008906 13009010 + 0 NA promoter-TSS (NM_018327) promoter-TSS (NM_018327) -21 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 5737 chr11 82533702 82533806 + 0 NA Intergenic MIRb|SINE|MIR -129841 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 25157 chr6 131951386 131951513 + 0 NA promoter-TSS (NM_001901) promoter-TSS (NM_001901) -71 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CTGF CCN2|HCS24|IGFBP8|NOV2 connective tissue growth factor protein-coding 23597 chr5 157575697 157575801 + 0 NA promoter-TSS (NM_033274) promoter-TSS (NM_033274) 74 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 4029 chr10 86959150 86959174 + 0 NA intron (NM_001330120, intron 3 of 6) intron (NM_001330120, intron 3 of 6) 631 NM_003087 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 91 chr1 6613493 6613658 + 0 NA promoter-TSS (NM_153812) promoter-TSS (NM_153812) -121 NM_153812 148479 Hs.516079 NM_153812 ENSG00000116273 PHF13 PHF5|SPOC1 PHD finger protein 13 protein-coding 7933 chr13 19863712 19863748 + 0 NA promoter-TSS (NM_001142684) promoter-TSS (NM_001142684) -94 NM_001039649 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 2137 chr1 179017166 179017296 + 0 NA Intergenic Intergenic -8573 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B, glycosaminoglycan xylosylkinase protein-coding 26502 chr7 82050384 82050488 + 0 NA TTS (NM_001302890) TTS (NM_001302890) 41259 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 4116 chr10 95290898 95291095 + 0 NA 5' UTR (NM_020992, exon 1 of 7) 5' UTR (NM_020992, exon 1 of 7) 152 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 26085 chr7 38561282 38561386 + 0 NA intron (NM_139316, intron 1 of 19) intron (NM_139316, intron 1 of 19) 70233 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 9088 chr14 57987716 57987792 + 0 NA Intergenic LTR33|LTR|ERVL -121880 NM_001206920 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 19268 chr3 24591731 24591813 + 0 NA Intergenic Intergenic -70337 NR_039955 100616448 NR_039955 ENSG00000265028 MIR4792 miR-4792 microRNA 4792 ncRNA 18279 chr20 55515867 55516061 + 0 NA Intergenic Intergenic -88767 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 22748 chr5 76759578 76759799 + 0 NA Intergenic Intergenic 43645 NM_001992 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 7146 chr12 56725393 56725551 + 0 NA promoter-TSS (NM_001113203) promoter-TSS (NM_001113203) 70 NM_001113202 4666 Hs.505735 NM_005594 ENSG00000196531 NACA HSD48|NAC-alpha|NACA1|skNAC nascent polypeptide-associated complex alpha subunit protein-coding 27230 chr7 151233238 151233342 + 0 NA 5' UTR (NM_019015, exon 1 of 4) 5' UTR (NM_019015, exon 1 of 4) 801 NM_001284295 54480 Hs.647084 NM_019015 ENSG00000033100 CHPF2 CSGLCA-T|CSGlcAT|ChSy-3|chPF-2 chondroitin polymerizing factor 2 protein-coding 27863 chr8 55764619 55764717 + 0 NA promoter-TSS (NM_001286657) promoter-TSS (NM_001286657) -688 NM_001286657 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 11198 chr16 29815953 29816040 + 0 NA promoter-TSS (NM_024516) promoter-TSS (NM_024516) -211 NM_024516 79447 Hs.702841 NM_024516 ENSG00000280789 PAGR1 C16orf53|GAS|PA1 PAXIP1 associated glutamate rich protein 1 protein-coding 14282 chr19 18951861 18951965 + 0 NA Intergenic L2c|LINE|L2 -10681 NM_004838 9454 Hs.720208 NM_004838 ENSG00000051128 HOMER3 HOMER-3|VESL3 homer scaffolding protein 3 protein-coding 19115 chr3 7788970 7789074 + 0 NA Intergenic Intergenic 227285 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 563 chr1 32801207 32801311 + 0 NA intron (NM_003680, intron 4 of 12) Tigger1|DNA|TcMar-Tigger -16183 NM_001256121 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 27018 chr7 131188444 131188548 + 0 NA intron (NM_001145354, intron 2 of 18) MLT1H|LTR|ERVL-MaLR 78400 NM_001145354 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 18719 chr22 26364558 26364660 + 0 NA intron (NM_001184777, intron 12 of 14) intron (NM_001184777, intron 12 of 14) -64705 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 28391 chr8 105849564 105849668 + 0 NA intron (NR_125796, intron 2 of 7) L1PB1|LINE|L1 210887 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 - ZFPM2 antisense RNA 1 ncRNA 11078 chr16 19005897 19006077 + 0 NA intron (NM_001160364, intron 1 of 15) intron (NM_001160364, intron 1 of 15) 21700 NM_001160364 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 30289 chr9 132008511 132008593 + 0 NA intron (NM_004269, intron 3 of 7) intron (NM_004269, intron 3 of 7) 71335 NM_001253882 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 22926 chr5 96701260 96701364 + 0 NA intron (NM_001330629, intron 3 of 30) intron (NM_001330629, intron 3 of 30) -1348 NM_001330632 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 20676 chr3 174441338 174441488 + 0 NA Intergenic CpG -417908 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 26310 chr7 55254946 55255039 + 0 NA intron (NR_110426, intron 2 of 3) CpG 643 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 15367 chr2 37711588 37711692 + 0 NA Intergenic Intergenic -39105 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 12346 chr17 33888555 33888659 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 268199 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 7334 chr12 82650710 82650863 + 0 NA Intergenic LTR104_Mam|LTR|Gypsy -36369 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 12280 chr17 28952420 28952552 + 0 NA promoter-TSS (NM_001033561) promoter-TSS (NM_001033561) -996 NM_001290131 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 25094 chr6 123925496 123925600 + 0 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 121702 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 20948 chr3 190435741 190435845 + 0 NA intron (NM_207316, intron 4 of 4) intron (NM_207316, intron 4 of 4) 14083 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 16975 chr2 206584501 206584605 + 0 NA intron (NM_003812, intron 18 of 25) L1PB1|LINE|L1 -59674 NM_001102659 200726 NM_001102659 ENSG00000235118 LOC200726 - hCG1657980 protein-coding 14494 chr19 42268899 42269085 + 0 NA intron (NM_001304815, intron 1 of 20) CpG 455 NM_001304815 23152 Hs.388236 NM_015125 ENSG00000079432 CIC - capicua transcriptional repressor protein-coding 68 chr1 5652336 5652440 + 0 NA Intergenic Intergenic 88317 NR_039612 100616489 NR_039612 ENSG00000264341 MIR4417 mir-4417 microRNA 4417 ncRNA 30033 chr9 121156557 121156570 + 0 NA intron (NM_001330762, intron 16 of 32) intron (NM_001330762, intron 16 of 32) 34793 NM_001330762 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 17564 chr20 7347531 7347702 + 0 NA non-coding (NR_110610, exon 1 of 3) non-coding (NR_110610, exon 1 of 3) 183 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 18229 chr20 52128596 52128674 + 0 NA intron (NM_199427, intron 5 of 8) intron (NM_199427, intron 5 of 8) -23151 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 5338 chr11 61333091 61333264 + 0 NA promoter-TSS (NM_001923) promoter-TSS (NM_001923) -5 NM_015533 26007 Hs.6278 NM_015533 ENSG00000149476 TKFC DAK|NET45 triokinase and FMN cyclase protein-coding 26270 chr7 50826918 50827054 + 0 NA Intergenic L1MD3|LINE|L1 -33524 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 16674 chr2 173080062 173080256 + 0 NA intron (NM_133646, intron 1 of 11) Tigger3b|DNA|TcMar-Tigger 4322 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 24395 chr6 32609992 32610096 + 0 NA Intergenic Intergenic -20208 NM_002124 3123 Hs.534322 NM_002124 ENSG00000196126 HLA-DRB1 DRB1|HLA-DR1B|HLA-DRB|SS1 major histocompatibility complex, class II, DR beta 1 protein-coding 5081 chr11 30422604 30422657 + 0 NA intron (NM_001145399, intron 4 of 6) intron (NM_001145399, intron 4 of 6) 99531 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 7164 chr12 57547142 57547349 + 0 NA promoter-TSS (NM_006400) promoter-TSS (NM_006400) 86 NM_001261413 10540 Hs.289123 NM_006400 ENSG00000175203 DCTN2 DCTN50|DYNAMITIN|HEL-S-77|RBP50 dynactin subunit 2 protein-coding 5961 chr11 102110174 102110354 + 0 NA promoter-TSS (NM_001195044) promoter-TSS (NM_001195044) -197 NM_001282098 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 10363 chr15 69623911 69623931 + 0 NA intron (NR_126437, intron 2 of 5) intron (NR_126437, intron 2 of 5) 31721 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000259641 PCAT29 - prostate cancer associated transcript 29 (non-protein coding) ncRNA 15710 chr2 67451719 67451759 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 54429 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 Ewing tumor associated antigen 1 protein-coding 10568 chr15 82373829 82373980 + 0 NA intron (NR_004847, intron 1 of 4) LTR10G|LTR|ERV1 18768 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin conjugating enzyme E2 Q2 pseudogene 2 pseudo 3995 chr10 80662842 80662946 + 0 NA Intergenic Intergenic 122075 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 222 chr1 16156093 16156226 + 0 NA promoter-TSS (NM_004431) promoter-TSS (NM_004431) -50 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 12646 chr17 49677456 49677597 + 0 NA intron (NM_003563, intron 1 of 10) CpG 637 NM_001007229 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 15220 chr2 27050688 27050819 + 0 NA promoter-TSS (NR_046730) promoter-TSS (NR_046730) -489 NR_046730 100874031 Hs.132725 NR_046730 ENSG00000231636 AGBL5-AS1 - AGBL5 antisense RNA 1 ncRNA 24877 chr6 85364520 85364677 + 0 NA Intergenic Intergenic 25588 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LOC101928820 - uncharacterized LOC101928820 ncRNA 10265 chr15 64010910 64011056 + 0 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 35339 NM_014326 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 24796 chr6 73704275 73704401 + 0 NA intron (NM_001159588, intron 2 of 31) intron (NM_001159588, intron 2 of 31) -8207 NR_110889 101928489 Hs.660059 NR_110889 ENSG00000231652 LOC101928489 - uncharacterized LOC101928489 ncRNA 3132 chr1 246142491 246142657 + 0 NA intron (NM_001167740, intron 5 of 11) MER44C|DNA|TcMar-Tigger 274838 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 31108 chrX 138856865 138856969 + 0 NA intron (NM_001139498, intron 2 of 5) intron (NM_001139498, intron 2 of 5) 10638 NM_001139502 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2 fibroblast growth factor 13 protein-coding 24234 chr6 26351571 26351675 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger -13536 NM_001197249 11118 Hs.376046 NM_007047 ENSG00000186470 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin subfamily 3 member A2 protein-coding 8313 chr13 60163937 60164101 + 0 NA promoter-TSS (NM_001042517) promoter-TSS (NM_001042517) -34 NM_001258369 81624 Hs.283127 NM_030932 ENSG00000139734 DIAPH3 AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2 diaphanous related formin 3 protein-coding 29509 chr9 90433510 90433614 + 0 NA promoter-TSS (NR_109795) promoter-TSS (NR_109795) -73 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 25396 chr6 157021448 157021664 + 0 NA intron (NM_020732, intron 5 of 19) CpG -241825 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 24773 chr6 70955991 70956157 + 0 NA exon (NM_080742, exon 1 of 4) exon (NM_080742, exon 1 of 4) 1011 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 18699 chr22 24521831 24521946 + 0 NA intron (NM_016327, intron 7 of 9) intron (NM_016327, intron 7 of 9) 26605 NM_016327 51733 Hs.731656 NM_016327 ENSG00000100024 UPB1 BUP1 beta-ureidopropionase 1 protein-coding 3245 chr10 6163737 6163804 + 0 NA intron (NM_001282630, intron 1 of 14) CpG -11508 NR_039698 100628560 NR_039698 ENSG00000283634 MIR3155B hsa-mir-3155b microRNA 3155b ncRNA 217 chr1 15834913 15835043 + 0 NA non-coding (NR_024279, exon 2 of 2) non-coding (NR_024279, exon 2 of 2) -12886 NM_015001 23013 Hs.744843 NM_015001 ENSG00000065526 SPEN HIAA0929|MINT|RBM15C|SHARP spen family transcriptional repressor protein-coding 7143 chr12 56645952 56646178 + 0 NA promoter-TSS (NM_001686) promoter-TSS (NM_001686) 3 NM_001686 506 Hs.406510 NM_001686 ENSG00000110955 ATP5B ATPMB|ATPSB|HEL-S-271 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide protein-coding 8866 chr14 35365675 35365767 + 0 NA Intergenic Intergenic 39033 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 21393 chr4 56387426 56387535 + 0 NA promoter-TSS (NM_001286668) promoter-TSS (NM_001286668) 28 NM_001286671 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 17638 chr20 13231572 13231648 + 0 NA intron (NM_080826, intron 1 of 5) intron (NM_080826, intron 1 of 5) 8077 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 15146 chr2 20236097 20236182 + 0 NA Intergenic Intergenic -10706 NM_001006946 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 22464 chr5 43105815 43105949 + 0 NA Intergenic Intergenic -14961 NM_001330707 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 19495 chr3 49412047 49412151 + 0 NA promoter-TSS (NM_022171) promoter-TSS (NM_022171) -2 NM_001313941 387 Hs.247077 NM_001664 ENSG00000067560 RHOA ARH12|ARHA|RHO12|RHOH12 ras homolog family member A protein-coding 158 chr1 10804091 10804223 + 0 NA Intergenic Intergenic -7481 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 10422 chr15 72686187 72686271 + 0 NA promoter-TSS (NM_001252678) promoter-TSS (NM_001252678) 50 NR_045566 585 Hs.208681 NM_033028 ENSG00000140463 BBS4 - Bardet-Biedl syndrome 4 protein-coding 13360 chr18 27136333 27136437 + 0 NA intron (NM_031422, intron 2 of 5) intron (NM_031422, intron 2 of 5) 48953 NM_001256316 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 19951 chr3 116939244 116939365 + 0 NA Intergenic L1PB3|LINE|L1 17873 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 25229 chr6 139407912 139407991 + 0 NA Intergenic Plat_L3|LINE|CR1 -33301 NM_006079 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 16235 chr2 120934985 120935000 + 0 NA intron (NM_005270, intron 2 of 12) intron (NM_005270, intron 2 of 12) 137701 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 11335 chr16 51408435 51408539 + 0 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -257215 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 17515 chr20 5066104 5066254 + 0 NA Intergenic Intergenic 46908 NM_001330986 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 13943 chr19 4246955 4247099 + 0 NA promoter-TSS (NM_018074) promoter-TSS (NM_018074) -43 NM_018074 55702 Hs.21811 NM_018074 ENSG00000105248 CCDC94 - coiled-coil domain containing 94 protein-coding 26897 chr7 118184012 118184131 + 0 NA promoter-TSS (NM_016200) promoter-TSS (NM_016200) 39 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 36 chr1 2133407 2133511 + 0 NA intron (NM_001033582, intron 1 of 14) CpG 28743 NM_001033582 5590 Hs.496255 NM_002744 ENSG00000067606 PRKCZ PKC-ZETA|PKC2 protein kinase C zeta protein-coding 21529 chr4 83536004 83536158 + 0 NA promoter-TSS (NM_001256421) promoter-TSS (NM_001256421) -26 NM_001256421 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 18205 chr20 50987909 50987999 + 0 NA Intergenic Intergenic 29140 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 1368 chr1 96473941 96474045 + 0 NA Intergenic Intergenic -99868 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 472 chr1 28247204 28247357 + 0 NA Intergenic CpG 11189 NM_016311 93974 Hs.744914 NM_016311 ENSG00000130770 ATPIF1 ATPI|ATPIP|IP ATPase inhibitory factor 1 protein-coding 21805 chr4 131584624 131584748 + 0 NA Intergenic LTR18A|LTR|ERVL -180152 NR_125883 101927305 Hs.507924 NR_125883 LOC101927305 - uncharacterized LOC101927305 ncRNA 20069 chr3 125433735 125433839 + 0 NA Intergenic Intergenic -58433 NM_021964 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 26151 chr7 43583088 43583220 + 0 NA promoter-TSS (NM_004760) promoter-TSS (NM_004760) 61 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 16825 chr2 190578699 190578803 + 0 NA Intergenic Intergenic -44009 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 17808 chr20 25022889 25023011 + 0 NA exon (NM_001252676, exon 4 of 13) exon (NM_001252676, exon 4 of 13) 9756 NM_001252676 84532 Hs.529353 NM_032501 ENSG00000154930 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 2180 chr1 182029653 182029674 + 0 NA Intergenic Intergenic 32049 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 9036 chr14 54652303 54652458 + 0 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 84768 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 2769 chr1 222465551 222465686 + 0 NA Intergenic CpG 82484 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 1428 chr1 106616149 106616253 + 0 NA Intergenic MIR|SINE|MIR -440444 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 9152 chr14 61476950 61477010 + 0 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 93214 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 28682 chr8 130358549 130358653 + 0 NA intron (NM_018482, intron 2 of 29) CpG-27576 -62068 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 28129 chr8 85836082 85836211 + 0 NA Intergenic Intergenic -8204 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 25943 chr7 28358661 28358781 + 0 NA intron (NM_182899, intron 1 of 9) AmnSINE1|SINE|5S-Deu-L2 -53804 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 4081 chr10 92892444 92892586 + 0 NA intron (NM_001319200, intron 1 of 17) MER77|LTR|ERVL 44060 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 27079 chr7 138001572 138001681 + 0 NA exon (NM_001253775, exon 1 of 4) exon (NM_001253775, exon 1 of 4) 475 NM_194071 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 21979 chr4 165207479 165207583 + 0 NA promoter-TSS (NM_007246) promoter-TSS (NM_007246) -87 NM_007246 11275 Hs.388668 NM_007246 ENSG00000109466 KLHL2 ABP-KELCH|MAV|MAYVEN kelch like family member 2 protein-coding 21367 chr4 53377537 53377647 + 0 NA promoter-TSS (NM_030917) promoter-TSS (NM_030917) -61 NM_001134938 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 4992 chr11 19829274 19829373 + 0 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -69240 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 16693 chr2 175154734 175154771 + 0 NA intron (NR_045768, intron 1 of 16) Tigger3c|DNA|TcMar-Tigger 12957 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 5696 chr11 77047691 77047808 + 0 NA Intergenic MER41B|LTR|ERV1 13408 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 998 chr1 62688277 62688297 + 0 NA promoter-TSS (NM_001271999) promoter-TSS (NM_001271999) 81 NM_001330614 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 6792 chr12 27843836 27843840 + 0 NA Intergenic Intergenic 63584 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 18357 chr20 60050300 60050476 + 0 NA Intergenic Intergenic -5537 NM_001302815 284756 Hs.335319 NM_173644 C20orf197 - chromosome 20 open reading frame 197 protein-coding 7385 chr12 89064866 89064942 + 0 NA Intergenic L2|LINE|L2 -45212 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 4621 chr10 131546534 131546672 + 0 NA Intergenic Intergenic -234882 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 1789 chr1 154479916 154480067 + 0 NA non-coding (NR_135169, exon 6 of 6) non-coding (NR_135169, exon 6 of 6) 22059 NR_135169 126669 Hs.591481 NM_001010846 ENSG00000169291 SHE - Src homology 2 domain containing E protein-coding 30423 chrUn_KI270442v1 14378 14527 + 0 NA NA (GAATG)n|Satellite|Satellite NA NA 29638 chr9 97039196 97039330 + 0 NA promoter-TSS (NM_001333) promoter-TSS (NM_001333) 47 NM_001333 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 11463 chr16 65658429 65658533 + 0 NA Intergenic Intergenic -82181 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 26505 chr7 82593926 82594030 + 0 NA Intergenic Intergenic -150172 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 22903 chr5 95446142 95446268 + 0 NA intron (NM_152548, intron 7 of 9) intron (NM_152548, intron 7 of 9) 54861 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 16767 chr2 181791403 181791568 + 0 NA Intergenic Intergenic -100231 NM_001287504 6744 Hs.196983 NM_006751 ENSG00000138434 SSFA2 CS-1|CS1|KRAP|SPAG13 sperm specific antigen 2 protein-coding 28861 chr8 145052382 145052527 + 0 NA promoter-TSS (NM_023080) promoter-TSS (NM_023080) 16 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 6733 chr12 22544602 22544707 + 0 NA promoter-TSS (NM_001286173) promoter-TSS (NM_001286173) -108 NM_014802 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 21507 chr4 82284974 82285116 + 0 NA Intergenic CpG 88951 NM_031369 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 1838 chr1 156106394 156106548 + 0 NA intron (NM_001282625, intron 3 of 12) CpG -8199 NM_170707 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 28595 chr8 125273937 125274150 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -156278 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 1773 chr1 153783681 153783834 + 0 NA Intergenic CpG 8465 NM_001317929 11000 Hs.438723 NM_024330 ENSG00000143554 SLC27A3 ACSVL3|FATP3|VLCS-3 solute carrier family 27 member 3 protein-coding 3883 chr10 73096940 73096945 + 0 NA promoter-TSS (NM_000917) promoter-TSS (NM_000917) 32 NM_001142595 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 12373 chr17 35519607 35519743 + 0 NA Intergenic L1MC3|LINE|L1 -31936 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 30867 chrX 86047510 86047541 + 0 NA promoter-TSS (NM_001320959) promoter-TSS (NM_001320959) 40 NM_000390 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM, Rab escort protein 1 protein-coding 29228 chr9 72979480 72979634 + 0 NA Intergenic Intergenic -26240 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 16732 chr2 178194317 178194499 + 0 NA promoter-TSS (NM_032523) promoter-TSS (NM_032523) -73 NM_001201480 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 15412 chr2 40716962 40717066 + 0 NA Intergenic MLT2B3|LTR|ERVL -204579 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 30873 chrX 100615154 100615300 + 0 NA Intergenic L1PA11|LINE|L1 21505 NM_001278740 7105 Hs.43233 NM_003270 ENSG00000000003 TSPAN6 T245|TM4SF6|TSPAN-6 tetraspanin 6 protein-coding 25757 chr7 17305077 17305219 + 0 NA intron (NM_001621, intron 1 of 10) intron (NM_001621, intron 1 of 10) 6496 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 31096 chrX 135531926 135532152 + 0 NA intron (NM_182540, intron 2 of 16) intron (NM_182540, intron 2 of 16) -11365 NR_046740 100874118 Hs.602150 NR_046740 ENSG00000225235 INTS6L-AS1 DDX26B-AS1 INTS6L antisense RNA 1 ncRNA 28669 chr8 129887093 129887216 + 0 NA intron (NR_046359, intron 4 of 14) MSTA-int|LTR|ERVL-MaLR 52718 NR_046359 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 3392 chr10 21525673 21525687 + 0 NA promoter-TSS (NM_207371) promoter-TSS (NM_207371) 2 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 17321 chr2 235394558 235394664 + 0 NA Intergenic MSTA|LTR|ERVL-MaLR -99478 NM_001037131 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 17123 chr2 219387620 219387764 + 0 NA promoter-TSS (NM_001319118) promoter-TSS (NM_001319118) 248 NM_012100 23549 Hs.258551 NM_012100 ENSG00000123992 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 16402 chr2 142834103 142834337 + 0 NA Intergenic L1ME2|LINE|L1 -43406 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 8225 chr13 46354899 46355003 + 0 NA intron (NM_001286761, intron 10 of 14) intron (NM_001286761, intron 10 of 14) 32549 NM_001286762 80183 Hs.98117 NM_025113 ENSG00000102445 RUBCNL C13orf18|KIAA0226L RUN and cysteine rich domain containing beclin 1 interacting protein like protein-coding 10855 chr16 1308981 1309103 + 0 NA promoter-TSS (NM_194260) promoter-TSS (NM_194260) -111 NM_194261 7329 Hs.302903 NM_003345 ENSG00000103275 UBE2I C358B7.1|P18|UBC9 ubiquitin conjugating enzyme E2 I protein-coding 24934 chr6 97283182 97283286 + 0 NA promoter-TSS (NM_198468) promoter-TSS (NM_198468) -58 NM_198468 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 13304 chr18 22348654 22348756 + 0 NA Intergenic CpG 69210 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 14541 chr19 45075529 45075659 + 0 NA intron (NM_145288, intron 2 of 2) intron (NM_145288, intron 2 of 2) 994 NM_145288 162979 Hs.192237 NM_145288 ENSG00000170684 ZNF296 ZFP296|ZNF342 zinc finger protein 296 protein-coding 19970 chr3 118782843 118782947 + 0 NA intron (NR_135547, intron 1 of 3) HAL1ME|LINE|L1 27938 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 6450 chr12 2640848 2640952 + 0 NA intron (NM_001129836, intron 31 of 46) intron (NM_001129836, intron 31 of 46) 31320 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 25111 chr6 125780296 125780451 + 0 NA promoter-TSS (NM_001199620) promoter-TSS (NM_001199620) -788 NM_001199619 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 22755 chr5 76814408 76814512 + 0 NA Intergenic Intergenic -4517 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 3974 chr10 79347390 79347494 + 0 NA promoter-TSS (NM_005729) promoter-TSS (NM_005729) -22 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 8098 chr13 33818035 33818093 + 0 NA promoter-TSS (NM_002915) promoter-TSS (NM_002915) -5 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 3918 chr10 75188116 75188197 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -21998 NM_001184783 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 3409 chr10 22648714 22648818 + 0 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 65342 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 12741 chr17 56936790 56936880 + 0 NA Intergenic LTR41|LTR|ERVL -22787 NM_005082 7706 Hs.528952 NM_005082 ENSG00000121060 TRIM25 EFP|RNF147|Z147|ZNF147 tripartite motif containing 25 protein-coding 5011 chr11 23113096 23113200 + 0 NA Intergenic LTR18B|LTR|ERVL -252722 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 14664 chr19 48835847 48835965 + 0 NA intron (NM_016246, intron 1 of 8) intron (NM_016246, intron 1 of 8) 771 NM_016246 51171 Hs.18788 NM_016246 ENSG00000087076 HSD17B14 DHRS10|SDR47C1|retSDR3 hydroxysteroid 17-beta dehydrogenase 14 protein-coding 30635 chrX 41391783 41391887 + 0 NA Intergenic Intergenic -55625 NM_022567 60506 Hs.302019 NM_022567 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 15227 chr2 27212235 27212358 + 0 NA promoter-TSS (NM_021095) promoter-TSS (NM_021095) 11 NM_021095 8884 Hs.435735 NM_021095 ENSG00000138074 SLC5A6 SMVT solute carrier family 5 member 6 protein-coding 16308 chr2 129191587 129191692 + 0 NA Intergenic Intergenic 82252 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 23749 chr5 173764521 173764625 + 0 NA Intergenic Intergenic -18364 NR_108027 101928136 Hs.449267 NR_108027 ENSG00000253686 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 729 chr1 42165755 42165859 + 0 NA Intergenic Intergenic -1083 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 12010 chr17 6577826 6577909 + 0 NA TTS (NM_014804) TTS (NM_014804) -21310 NM_031220 83394 Hs.183983 NM_031220 ENSG00000091622 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 17982 chr20 38271219 38271363 + 0 NA intron (NR_104170, intron 1 of 1) intron (NR_104170, intron 1 of 1) -10519 NM_001029864 85449 Hs.472690 NM_001029864 ENSG00000149633 KIAA1755 - KIAA1755 protein-coding 30142 chr9 127424331 127424454 + 0 NA promoter-TSS (NM_001322260) promoter-TSS (NM_001322260) 18 NM_001286698 7633 Hs.522399 NM_007135 ENSG00000196152 ZNF79 pT7 zinc finger protein 79 protein-coding 21072 chr3 197394712 197394864 + 0 NA Intergenic Intergenic -95516 NM_001290983 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs large MAGUK scaffold protein 1 protein-coding 6319 chr11 128210555 128210735 + 0 NA Intergenic Intergenic 311665 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 27431 chr8 15506830 15506934 + 0 NA Intergenic MER39B|LTR|ERV1 -33205 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|N33|OST3A tumor suppressor candidate 3 protein-coding 24529 chr6 41111175 41111279 + 0 NA non-coding (NR_026938, exon 6 of 23) non-coding (NR_026938, exon 6 of 23) 10193 NR_026938 221442 Hs.374076 NM_001010871 ENSG00000161912 ADCY10P1 - adenylate cyclase 10, soluble pseudogene 1 pseudo 1231 chr1 86616971 86617048 + 0 NA intron (NR_135837, intron 4 of 4) THE1D|LTR|ERVL-MaLR -17267 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 11628 chr16 74695991 74696095 + 0 NA intron (NM_001142497, intron 1 of 5) MLT1J2|LTR|ERVL-MaLR 5105 NM_152649 197259 Hs.119878 NM_152649 ENSG00000168404 MLKL hMLKL mixed lineage kinase domain like pseudokinase protein-coding 12399 chr17 37359160 37359305 + 0 NA promoter-TSS (NM_198836).2 promoter-TSS (NM_198836).2 -116 NM_198836 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 21898 chr4 151015811 151015915 + 0 NA promoter-TSS (NM_001199282) promoter-TSS (NM_001199282) -366 NM_006726 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 7904 chr12 132084138 132084266 + 0 NA promoter-TSS (NR_003290) promoter-TSS (NR_003290) -81 NR_003290 347918 Hs.122115 NM_182613 ENSG00000185684 EP400NL - EP400 N-terminal like pseudo 2446 chr1 203907094 203907198 + 0 NA Intergenic Kanga1b|DNA|TcMar-Tc2 45296 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 9450 chr14 78598173 78598277 + 0 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 194494 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 11710 chr16 81035700 81035802 + 0 NA promoter-TSS (NM_015251) promoter-TSS (NM_015251) -102 NM_015251 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 13291 chr18 21242155 21242369 + 0 NA promoter-TSS (NM_001142966) promoter-TSS (NM_001142966) 20 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772 growth regulation by estrogen in breast cancer 1 like protein-coding 27702 chr8 38176720 38176824 + 0 NA promoter-TSS (NM_014462) promoter-TSS (NM_014462) -42 NR_045492 27257 Hs.425311 NM_014462 ENSG00000175324 LSM1 CASM|YJL124C LSM1 homolog, mRNA degradation associated protein-coding 7028 chr12 52244054 52244109 + 0 NA intron (NM_005556, intron 6 of 8) intron (NM_005556, intron 6 of 8) 10911 NM_005556 3855 Hs.411501 NM_005556 ENSG00000135480 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 5644 chr11 73289037 73289038 + 0 NA intron (NM_001277208, intron 1 of 1) intron (NM_001277208, intron 1 of 1) 16895 NM_001277208 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 1046 chr1 65309370 65309474 + 0 NA promoter-TSS (NM_001256864) promoter-TSS (NM_001256864) -113 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 13261 chr18 10035615 10035719 + 0 NA Intergenic Intergenic 121709 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 16264 chr2 125405933 125406038 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -1249950 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 16827 chr2 190608034 190608138 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -40809 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 10986 chr16 9047971 9048094 + 0 NA Intergenic Intergenic -43648 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 12729 chr17 55751003 55751107 + 0 NA promoter-TSS (NM_021213) promoter-TSS (NM_021213) -50 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 28775 chr8 141076015 141076109 + 0 NA Intergenic Intergenic -52559 NM_014957 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 4021 chr10 86520962 86521066 + 0 NA intron (NM_015045, intron 1 of 18) CpG 770 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 16329 chr2 131492805 131492909 + 0 NA promoter-TSS (NM_001085365) promoter-TSS (NM_001085365) 44 NR_026922 150776 Hs.535622 NR_026922 ENSG00000152117 LOC150776 - sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene pseudo 22739 chr5 75053747 75053845 + 0 NA Intergenic CpG-22198 -1153 NR_126375 104326191 Hs.582288 NR_126375 ENSG00000250889 LINC01336 - long intergenic non-protein coding RNA 1336 ncRNA 13838 chr19 680532 680547 + 0 NA intron (NM_005860, intron 3 of 4) CpG-12911 4150 NM_005860 10272 Hs.529038 NM_005860 ENSG00000070404 FSTL3 FLRG|FSRP follistatin like 3 protein-coding 30481 chrX 10017948 10018052 + 0 NA intron (NM_015691, intron 1 of 22) intron (NM_015691, intron 1 of 22) 2245 NM_015691 55841 Hs.527524 NM_015691 ENSG00000047644 WWC3 BM042 WWC family member 3 protein-coding 17015 chr2 208982972 208983076 + 0 NA Intergenic Intergenic 440382 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 30488 chrX 11758521 11758688 + 0 NA promoter-TSS (NM_001193270) promoter-TSS (NM_001193270) 22 NM_001193270 10943 Hs.655288 NM_006800 ENSG00000005302 MSL3 MSL3L1 male-specific lethal 3 homolog (Drosophila) protein-coding 9657 chr14 99575220 99575309 + 0 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 29126 NM_001144995 317762 Hs.709288 NM_001144995 ENSG00000205476 CCDC85C - coiled-coil domain containing 85C protein-coding 22359 chr5 34839104 34839199 + 0 NA promoter-TSS (NM_144725) promoter-TSS (NM_144725) -13 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 20256 chr3 139302377 139302515 + 0 NA Intergenic Intergenic -41573 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 12782 chr17 59106964 59107088 + 0 NA promoter-TSS (NM_015294) promoter-TSS (NM_015294) -105 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 27639 chr8 29737512 29737656 + 0 NA intron (NR_026765, intron 1 of 3) intron (NR_026765, intron 1 of 3) 10525 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 7987 chr13 25213926 25214030 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR 32646 NR_120427 102723318 Hs.549877 NR_120427 LINC01053 - long intergenic non-protein coding RNA 1053 ncRNA 7801 chr12 122422160 122422299 + 0 NA intron (NM_002956, intron 1 of 24) CpG 340 NM_001247997 6249 Hs.524809 NM_002956 ENSG00000130779 CLIP1 CLIP|CLIP-170|CLIP170|CYLN1|RSN CAP-Gly domain containing linker protein 1 protein-coding 26962 chr7 127287271 127287404 + 0 NA Intergenic Intergenic -34963 NM_001127323 2918 Hs.449625 NM_000845 ENSG00000179603 GRM8 GLUR8|GPRC1H|MGLUR8|mGlu8 glutamate metabotropic receptor 8 protein-coding 344 chr1 23368912 23369013 + 0 NA promoter-TSS (NR_033690) promoter-TSS (NR_033690) -9 NR_033690 148898 Hs.61884 NM_138479 ENSG00000249087 ZNF436-AS1 C1orf213 ZNF436 antisense RNA 1 ncRNA 8547 chr13 105774283 105774387 + 0 NA Intergenic Intergenic 67505 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 13745 chr18 68275749 68275853 + 0 NA Intergenic MER89-int|LTR|ERV1 439315 NM_019022 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 26871 chr7 116395515 116395669 + 0 NA Intergenic Intergenic -104009 NM_001206747 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 7445 chr12 93784498 93784602 + 0 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) -46727 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 4682 chr11 1309764 1309801 + 0 NA promoter-TSS (NM_001318512) promoter-TSS (NM_001318512) 74 NR_029409 255512 Hs.588291 NR_029409 ENSG00000255153 TOLLIP-AS1 - TOLLIP antisense RNA 1 (head to head) ncRNA 19507 chr3 49929836 49929987 + 0 NA 5' UTR (NM_001142501, exon 1 of 5) 5' UTR (NM_001142501, exon 1 of 5) 101 NM_032355 84315 Hs.655014 NM_032355 ENSG00000164077 MON1A SAND1 MON1 homolog A, secretory trafficking associated protein-coding 7129 chr12 56266801 56266933 + 0 NA promoter-TSS (NM_144576) promoter-TSS (NM_144576) 9 NM_144576 93058 Hs.4096 NM_144576 ENSG00000135469 COQ10A - coenzyme Q10A protein-coding 26571 chr7 90596206 90596264 + 0 NA promoter-TSS (NM_001287135) promoter-TSS (NM_001287135) -127 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 2103 chr1 175471150 175471263 + 0 NA intron (NM_001328635, intron 2 of 22) intron (NM_001328635, intron 2 of 22) 272410 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 11460 chr16 65414387 65414491 + 0 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 161861 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 13900 chr19 2529629 2529738 + 0 NA intron (NM_052847, intron 3 of 4) intron (NM_052847, intron 3 of 4) 53558 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 20869 chr3 186617125 186617206 + 0 NA intron (NM_001622, intron 3 of 6) intron (NM_001622, intron 3 of 6) 4104 NM_001622 197 Hs.324746 NM_001622 ENSG00000145192 AHSG A2HS|AHS|FETUA|HSGA alpha 2-HS glycoprotein protein-coding 20032 chr3 122564231 122564358 + 0 NA promoter-TSS (NM_001146104) promoter-TSS (NM_001146104) 6 NM_001146102 83666 Hs.518200 NM_031458 ENSG00000138496 PARP9 ARTD9|BAL|BAL1|MGC:7868 poly(ADP-ribose) polymerase family member 9 protein-coding 12203 chr17 19992837 19993022 + 0 NA Intergenic Intergenic -15073 NM_001330152 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 12740 chr17 56915897 56916057 + 0 NA Intergenic Intergenic -1929 NM_005082 7706 Hs.528952 NM_005082 ENSG00000121060 TRIM25 EFP|RNF147|Z147|ZNF147 tripartite motif containing 25 protein-coding 24855 chr6 82861208 82861312 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 204581 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 2224 chr1 184426002 184426105 + 0 NA intron (NM_030806, intron 1 of 5) L3|LINE|CR1 39037 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 25146 chr6 129710154 129710340 + 0 NA promoter-TSS (NM_033515) promoter-TSS (NM_033515) -22 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 24181 chr6 22231767 22231871 + 0 NA Intergenic LTR16A1|LTR|ERVL 65682 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 13495 chr18 45774235 45774265 + 0 NA Intergenic Intergenic 47297 NM_001146037 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 26867 chr7 116288260 116288342 + 0 NA Intergenic Intergenic -1574 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 25224 chr6 139028588 139028741 + 0 NA promoter-TSS (NM_021243) promoter-TSS (NM_021243) -18 NM_021243 58527 Hs.600861 NM_021243 ENSG00000146386 ABRACL C6orf115|Costars|HSPC280|PRO2013 ABRA C-terminal like protein-coding 5080 chr11 30412887 30412991 + 0 NA intron (NM_001584, intron 5 of 5) intron (NM_001584, intron 5 of 5) 89840 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 29050 chr9 34158456 34158582 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -20486 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 5683 chr11 76235369 76235504 + 0 NA Intergenic CpG -28906 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 12000 chr17 6374411 6374519 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR 60667 NM_001285402 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 14391 chr19 36141368 36141471 + 0 NA promoter-TSS (NM_001302633) promoter-TSS (NM_001302633) -1 NM_001302633 826 Hs.515371 NM_001749 ENSG00000126247 CAPNS1 CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain small subunit 1 protein-coding 26984 chr7 129218629 129218783 + 0 NA Intergenic Intergenic -6308 NM_001130720 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 16341 chr2 132439917 132440021 + 0 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 23395 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 12722 chr17 55433162 55433266 + 0 NA Intergenic Intergenic -11234 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 19979 chr3 119184880 119184984 + 0 NA intron (NM_006952, intron 1 of 7) intron (NM_006952, intron 1 of 7) 11354 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 4998 chr11 20050653 20050757 + 0 NA intron (NM_182964, intron 16 of 37) intron (NM_182964, intron 16 of 37) -1402 NR_046672 100874014 Hs.557916 NR_046672 ENSG00000254453 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 25607 chr7 5608362 5608466 + 0 NA Intergenic Intergenic 15609 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 29252 chr9 74556733 74556810 + 0 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -58218 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA 27139 chr7 142384755 142384800 + 0 NA Intergenic Intergenic -112528 NR_036483 207147 Hs.604069 NR_036483 ENSG00000186163 TRY2P - trypsinogen-like pseudogene pseudo 15865 chr2 78541831 78542048 + 0 NA Intergenic L1PBa1|LINE|L1 -3592 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 10487 chr15 77071093 77071197 + 0 NA promoter-TSS (NM_001168412) promoter-TSS (NM_001168412) 83 NM_001168412 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 19793 chr3 103181273 103181377 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger 342791 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 8555 chr13 106096675 106096826 + 0 NA Intergenic Intergenic -279813 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 9928 chr15 40420922 40420977 + 0 NA 3' UTR (NM_001159508, exon 11 of 11) 3' UTR (NM_001159508, exon 11 of 11) 15464 NM_001159508 3712 Hs.513646 NM_002225 ENSG00000128928 IVD ACAD2 isovaleryl-CoA dehydrogenase protein-coding 26245 chr7 48427388 48427507 + 0 NA intron (NM_152701, intron 41 of 61) intron (NM_152701, intron 41 of 61) 255987 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 18748 chr22 28772583 28772770 + 0 NA promoter-TSS (NM_001284263) promoter-TSS (NM_001284263) 2 NM_001284263 150275 Hs.406460 NM_173510 ENSG00000159873 CCDC117 dJ366L4.1 coiled-coil domain containing 117 protein-coding 6842 chr12 32679171 32679307 + 0 NA promoter-TSS (NM_001278463) promoter-TSS (NM_001278463) 39 NM_001278466 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV dynamin 1 like protein-coding 20363 chr3 149245936 149246040 + 0 NA Intergenic Intergenic -23943 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin protein-coding 13090 chr17 79114943 79115090 + 0 NA intron (NM_001082575, intron 5 of 14) intron (NM_001082575, intron 5 of 14) 40079 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 28387 chr8 105069903 105069997 + 0 NA Intergenic LTR16D|LTR|ERVL -248969 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 18807 chr22 31630764 31630917 + 0 NA promoter-TSS (NM_014338) promoter-TSS (NM_014338) -16 NM_014338 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 29590 chr9 94726547 94726697 + 0 NA promoter-TSS (NM_032823) promoter-TSS (NM_032823) -47 NM_001193331 84909 Hs.434253 NM_032823 ENSG00000148120 C9orf3 AOPEP|AP-O|APO|C90RF3|ONPEP chromosome 9 open reading frame 3 protein-coding 26404 chr7 73822607 73822759 + 0 NA Intergenic Intergenic -8180 NM_001305 1364 Hs.647036 NM_001305 ENSG00000189143 CLDN4 CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R claudin 4 protein-coding 2253 chr1 187691598 187691715 + 0 NA Intergenic L1MC1|LINE|L1 248028 NR_132374 106144535 Hs.568709 NR_132374 ENSG00000231599 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 2433 chr1 203558360 203558410 + 0 NA Intergenic MIRb|SINE|MIR 64242 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 14625 chr19 47608695 47608807 + 0 NA intron (NM_015711, intron 1 of 14) CpG 555 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 20799 chr3 183635495 183635681 + 0 NA promoter-TSS (NM_017644) promoter-TSS (NM_017644) -35 NM_017644 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|KRIP6 kelch like family member 24 protein-coding 1477 chr1 109397983 109398069 + 0 NA promoter-TSS (NM_002959) promoter-TSS (NM_002959) -81 NM_002959 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 14216 chr19 16279319 16279489 + 0 NA Intergenic Intergenic -45422 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 29327 chr9 78746256 78746340 + 0 NA Intergenic Intergenic 399368 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 11507 chr16 67719346 67719478 + 0 NA promoter-TSS (NM_030819) promoter-TSS (NM_030819) -42 NR_027398 81577 Hs.307084 NM_030819 ENSG00000141098 GFOD2 - glucose-fructose oxidoreductase domain containing 2 protein-coding 6954 chr12 48794861 48795010 + 0 NA Intergenic L2a|LINE|L2 5359 NR_110020 100506125 Hs.306727 NR_110019 ENSG00000257660 LOC100506125 - uncharacterized LOC100506125 ncRNA 19007 chr22 45605325 45605483 + 0 NA non-coding (NR_131244, exon 1 of 2) non-coding (NR_131244, exon 1 of 2) 243 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 24000 chr6 9503459 9503666 + 0 NA Intergenic Eulor5A|DNA?|DNA? 851353 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 5777 chr11 85827779 85827883 + 0 NA Intergenic Intergenic -16672 NM_001289608 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 20017 chr3 121835070 121835203 + 0 NA promoter-TSS (NM_001023570) promoter-TSS (NM_001023570) -44 NM_018456 55840 Hs.477325 NM_018456 ENSG00000145088 EAF2 BM040|TRAITS|U19 ELL associated factor 2 protein-coding 7610 chr12 107761186 107761266 + 0 NA promoter-TSS (NM_012406) promoter-TSS (NM_012406) -89 NM_012406 11108 Hs.506655 NM_012406 ENSG00000110851 PRDM4 PFM1 PR/SET domain 4 protein-coding 6310 chr11 127651286 127651318 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 380232 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 1094 chr1 68384519 68384631 + 0 NA Intergenic Intergenic 65384 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|rd12|sRPE65 RPE65, retinoid isomerohydrolase protein-coding 995 chr1 62321594 62321698 + 0 NA Intergenic Intergenic -2232 NM_001320269 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 11833 chr16 88663155 88663267 + 0 NA promoter-TSS (NR_024399) promoter-TSS (NR_024399) -62 NM_002461 4597 Hs.252457 NM_002461 ENSG00000167508 MVD FP17780|MDDase|MPD|POROK7 mevalonate diphosphate decarboxylase protein-coding 15173 chr2 24047419 24047570 + 0 NA promoter-TSS (NM_001142319) promoter-TSS (NM_001142319) -68 NM_001142319 80304 Hs.24624 NM_025203 ENSG00000163026 WDCP C2orf44|PP384 WD repeat and coiled coil containing protein-coding 6066 chr11 111376713 111376877 + 0 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 2637 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 associating factor 1 protein-coding 625 chr1 36162209 36162358 + 0 NA intron (NM_018067, intron 1 of 16) intron (NM_018067, intron 1 of 16) -6230 NM_001270895 27095 Hs.523131 NM_014408 ENSG00000054116 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 14453 chr19 40433906 40434000 + 0 NA Intergenic CpG -7928 NM_013376 29950 Hs.269898 NM_013376 ENSG00000197019 SERTAD1 SEI1|TRIP-Br1 SERTA domain containing 1 protein-coding 31174 chrX 153794461 153794605 + 0 NA promoter-TSS (NM_004135) promoter-TSS (NM_004135) -10 NM_174869 3421 Hs.410197 NM_004135 ENSG00000067829 IDH3G H-IDHG isocitrate dehydrogenase 3 (NAD(+)) gamma protein-coding 13878 chr19 1897671 1897779 + 0 NA Intergenic Intergenic -7489 NM_001329539 113178 Hs.144980 NM_079834 ENSG00000227500 SCAMP4 SCAMP-4 secretory carrier membrane protein 4 protein-coding 29549 chr9 92481407 92481511 + 0 NA intron (NM_001193335, intron 1 of 6) intron (NM_001193335, intron 1 of 6) 1103 NM_001193335 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 20968 chr3 191417110 191417253 + 0 NA Intergenic Intergenic -8343 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 13352 chr18 26488566 26488692 + 0 NA intron (NM_001258222, intron 2 of 4) intron (NM_001258222, intron 2 of 4) 59907 NM_001142730 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 9574 chr14 92794017 92794079 + 0 NA promoter-TSS (NM_005113) promoter-TSS (NM_005113) -183 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 10292 chr15 65133803 65133932 + 0 NA promoter-TSS (NM_005707) promoter-TSS (NM_005707) -31 NM_005707 10081 Hs.458596 NM_005707 ENSG00000090470 PDCD7 ES18|HES18 programmed cell death 7 protein-coding 16015 chr2 99617820 99617924 + 0 NA intron (NM_001025108, intron 12 of 23) MIRc|SINE|MIR -127816 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 19 chr1 1407196 1407367 + 0 NA promoter-TSS (NM_017971) promoter-TSS (NM_017971) 32 NM_001318485 55052 Hs.182698 NM_017971 ENSG00000242485 MRPL20 L20mt|MRP-L20 mitochondrial ribosomal protein L20 protein-coding 13824 chr18 80033620 80033731 + 0 NA promoter-TSS (NM_001171967) promoter-TSS (NM_001171967) 260 NM_001305564 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 21142 chr4 6269676 6269815 + 0 NA promoter-TSS (NM_001145853) promoter-TSS (NM_001145853) -105 NM_006005 7466 Hs.518602 NM_006005 ENSG00000109501 WFS1 CTRCT41|WFRS|WFS|WFSL wolframin ER transmembrane glycoprotein protein-coding 18221 chr20 51750293 51750402 + 0 NA intron (NM_006045, intron 1 of 27) intron (NM_006045, intron 1 of 27) 18064 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 29254 chr9 74773987 74774091 + 0 NA intron (NM_017662, intron 24 of 38) intron (NM_017662, intron 24 of 38) 113308 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 24044 chr6 11772565 11772669 + 0 NA intron (NM_001143948, intron 1 of 6) intron (NM_001143948, intron 1 of 6) 6430 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 25812 chr7 20785481 20785585 + 0 NA exon (NM_198956, exon 3 of 3) exon (NM_198956, exon 3 of 3) 1356 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 3332 chr10 15013600 15013772 + 0 NA Intergenic HERVE-int|LTR|ERV1 21739 NR_144469 105376432 Hs.723069 NR_144469 DCLRE1CP1 - DNA cross-link repair 1C pseudogene 1 pseudo 8874 chr14 35809178 35809318 + 0 NA promoter-TSS (NM_001283043) promoter-TSS (NM_001283043) 75 NM_001346246 253959 Hs.113150 NM_014990 ENSG00000174373 RALGAPA1 GARNL1|GRIPE|RalGAPalpha1|TULIP1|p240 Ral GTPase activating protein catalytic alpha subunit 1 protein-coding 7853 chr12 124863815 124863919 + 0 NA 5' UTR (NM_001082959, exon 1 of 12) 5' UTR (NM_001082959, exon 1 of 12) 106 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 14406 chr19 38004628 38004765 + 0 NA intron (NM_015073, intron 1 of 21) MLT1K|LTR|ERVL-MaLR 97475 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 29044 chr9 33473881 33473962 + 0 NA promoter-TSS (NM_022917) promoter-TSS (NM_022917) 22 NM_022917 65083 Hs.493709 NM_022917 ENSG00000165271 NOL6 NRAP|UTP22|bA311H10.1 nucleolar protein 6 protein-coding 26511 chr7 83677236 83677375 + 0 NA Intergenic Intergenic -28142 NM_012431 9723 Hs.528721 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 15907 chr2 85538940 85539092 + 0 NA promoter-TSS (NR_038942) promoter-TSS (NR_038942) 38 NM_005911 4144 Hs.516157 NM_005911 ENSG00000168906 MAT2A MATA2|MATII|SAMS2 methionine adenosyltransferase 2A protein-coding 31156 chrX 151974654 151974758 + 0 NA promoter-TSS (NM_004961) promoter-TSS (NM_004961) -27 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 11378 chr16 54930665 54930816 + 0 NA promoter-TSS (NM_001252197) promoter-TSS (NM_001252197) -459 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 1880 chr1 158155779 158155883 + 0 NA Intergenic Intergenic -15191 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 13634 chr18 57803290 57803380 + 0 NA promoter-TSS (NM_005603) promoter-TSS (NM_005603) -240 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 14692 chr19 49496158 49496259 + 0 NA promoter-TSS (NM_001015) promoter-TSS (NM_001015) -157 NM_001015 6205 Hs.433529 NM_001015 ENSG00000142534 RPS11 S11 ribosomal protein S11 protein-coding 21976 chr4 164956826 164956930 + 0 NA promoter-TSS (NM_153027) promoter-TSS (NM_153027) -70 NM_153027 152756 Hs.178648 NM_153027 ENSG00000250486 FAM218A C4orf39 family with sequence similarity 218 member A protein-coding 23349 chr5 140401591 140401695 + 0 NA promoter-TSS (NM_001197030) promoter-TSS (NM_001197030) -171 NM_001197030 54882 Hs.594084 NM_017747 ENSG00000131503 ANKHD1 MASK|MASK1|PP2500|VBARP ankyrin repeat and KH domain containing 1 protein-coding 22951 chr5 100535252 100535376 + 0 NA promoter-TSS (NM_198507) promoter-TSS (NM_198507) 9 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 9181 chr14 63543371 63543519 + 0 NA promoter-TSS (NR_104104) promoter-TSS (NR_104104) -84 NM_006246 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E - protein phosphatase 2 regulatory subunit B'epsilon protein-coding 15005 chr2 11130038 11130142 + 0 NA intron (NR_040080, intron 1 of 8) intron (NR_040080, intron 1 of 8) 2086 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 6545 chr12 6944764 6944868 + 0 NA TTS (NR_023317) TTS (NR_023317) 999 NR_126035 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 28968 chr9 19975528 19975632 + 0 NA Intergenic Intergenic -188561 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 29366 chr9 82021283 82021446 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 32592 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 5236 chr11 46700599 46700703 + 0 NA promoter-TSS (NM_024741) promoter-TSS (NM_024741) 14 NM_004308 392 Hs.138860 NM_004308 ENSG00000175220 ARHGAP1 CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP Rho GTPase activating protein 1 protein-coding 7169 chr12 57782830 57782912 + 0 NA TTS (NM_015433) TTS (NM_015433) 126 NM_001172697 10102 Hs.632704 NM_005726 ENSG00000123297 TSFM EFTS|EFTSMT Ts translation elongation factor, mitochondrial protein-coding 1070 chr1 67570511 67570625 + 0 NA Intergenic Intergenic -114609 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 10765 chr15 95247182 95247334 + 0 NA Intergenic Intergenic 79842 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 12211 chr17 20961666 20961770 + 0 NA intron (NR_123730, intron 5 of 5) L1ME3B|LINE|L1 23198 NR_123730 339260 Hs.661076 NR_123730 ENSG00000233098 LOC339260 - uncharacterized LOC339260 ncRNA 3117 chr1 244600047 244600185 + 0 NA intron (NM_173807, intron 17 of 20) intron (NM_173807, intron 17 of 20) -52932 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 20262 chr3 139389667 139389681 + 0 NA promoter-TSS (NM_004766) promoter-TSS (NM_004766) 6 NM_004766 9276 Hs.681616 NM_004766 ENSG00000184432 COPB2 beta'-COP coatomer protein complex subunit beta 2 protein-coding 8591 chr13 109436354 109436457 + 0 NA Intergenic Intergenic 35709 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 4332 chr10 110076928 110077032 + 0 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -68599 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 21375 chr4 54925014 54925118 + 0 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 200529 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 30129 chr9 126915520 126915624 + 0 NA intron (NM_001322324, intron 1 of 17) CpG 798 NM_001322325 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 23287 chr5 137075277 137075443 + 0 NA intron (NM_004598, intron 5 of 10) L2c|LINE|L2 -52837 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 25483 chr6 167827771 167827815 + 0 NA promoter-TSS (NR_027906) promoter-TSS (NR_027906) 158 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4 afadin, adherens junction formation factor protein-coding 22315 chr5 19929155 19929259 + 0 NA intron (NM_001291956, intron 4 of 14) intron (NM_001291956, intron 4 of 14) -42935 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 21116 chr4 2262213 2262384 + 0 NA promoter-TSS (NM_006454) promoter-TSS (NM_006454) -286 NM_006454 10608 Hs.655020 NM_006454 ENSG00000123933 MXD4 MAD4|MST149|MSTP149|bHLHc12 MAX dimerization protein 4 protein-coding 20381 chr3 149752521 149752687 + 0 NA promoter-TSS (NM_016094) promoter-TSS (NM_016094) -105 NR_135149 51122 Hs.432729 NM_016094 ENSG00000114744 COMMD2 HSPC042 COMM domain containing 2 protein-coding 27543 chr8 23682836 23683024 + 0 NA promoter-TSS (NM_001256339) promoter-TSS (NM_001256339) 7 NM_006167 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 5038 chr11 27040472 27040576 + 0 NA promoter-TSS (NM_003986) promoter-TSS (NM_003986) -438 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 14843 chr19 57363349 57363453 + 0 NA promoter-TSS (NM_173631) promoter-TSS (NM_173631) -34 NM_173631 284306 Hs.446620 NM_173631 ENSG00000152433 ZNF547 - zinc finger protein 547 protein-coding 5517 chr11 66439025 66439150 + 0 NA promoter-TSS (NM_170739) promoter-TSS (NM_170739) -239 NR_120588 65003 Hs.418450 NM_016050 ENSG00000174547 MRPL11 CGI-113|L11MT|MRP-L11 mitochondrial ribosomal protein L11 protein-coding 3577 chr10 35127172 35127274 + 0 NA promoter-TSS (NM_181571) promoter-TSS (NM_181571) -234 NM_183060 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 7808 chr12 122679126 122679254 + 0 NA Intergenic Intergenic 24167 NM_177551 338442 Hs.524812 NM_177551 ENSG00000182782 HCAR2 GPR109A|HCA2|HM74a|HM74b|NIACR1|PUMAG|Puma-g hydroxycarboxylic acid receptor 2 protein-coding 14718 chr19 50376324 50376482 + 0 NA promoter-TSS (NM_007121) promoter-TSS (NM_007121) -20 NM_007121 7376 Hs.432976 NM_007121 ENSG00000131408 NR1H2 LXR-b|LXRB|NER|NER-I|RIP15|UNR nuclear receptor subfamily 1 group H member 2 protein-coding 7010 chr12 51270183 51270336 + 0 NA promoter-TSS (NM_001033873) promoter-TSS (NM_001033873) -49 NM_001033873 57228 Hs.652389 NM_001031628 ENSG00000170545 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 6579 chr12 9364968 9365072 + 0 NA Intergenic MER101B|LTR|ERV1 -2444 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LOC101930452 - uncharacterized LOC101930452 ncRNA 25435 chr6 160042229 160042333 + 0 NA intron (NM_000876, intron 11 of 47) intron (NM_000876, intron 11 of 47) -34617 NR_047511 100271873 Hs.742166 NR_047511 ENSG00000268257 AIRN AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088 antisense of IGF2R non-protein coding RNA ncRNA 28648 chr8 127854296 127854400 + 0 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 58386 NR_031609 100302185 NR_031609 ENSG00000249859 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 20379 chr3 149658135 149658217 + 0 NA promoter-TSS (NM_001168280) promoter-TSS (NM_001168280) -34 NR_040250 100128025 Hs.594912 NR_040250 ENSG00000241313 WWTR1-AS1 - WWTR1 antisense RNA 1 ncRNA 7951 chr13 21435948 21436067 + 0 NA intron (NR_104487, intron 1 of 12) LTR16A|LTR|ERVL 23362 NM_153251 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20 zinc finger DHHC-type containing 20 protein-coding 14319 chr19 27793302 27793421 + 0 NA promoter-TSS (NR_110688) promoter-TSS (NR_110688) -106 NR_110688 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 26160 chr7 43926613 43926782 + 0 NA promoter-TSS (NM_001077664) promoter-TSS (NM_001077664) 261 NM_015983 51619 Hs.19196 NM_015983 ENSG00000078967 UBE2D4 HBUCE1 ubiquitin conjugating enzyme E2 D4 (putative) protein-coding 24242 chr6 26554006 26554044 + 0 NA Intergenic Intergenic -15299 NR_134611 105374988 Hs.551772 NR_134611 LOC105374988 - uncharacterized LOC105374988 ncRNA 16960 chr2 205685458 205685562 + 0 NA intron (NM_201279, intron 1 of 15) CpG 3010 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 6777 chr12 27179968 27180086 + 0 NA Intergenic Intergenic -64118 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 23005 chr5 110738919 110739059 + 0 NA promoter-TSS (NM_001303249) promoter-TSS (NM_001303249) 17 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 29208 chr9 72281044 72281148 + 0 NA Intergenic Intergenic -24340 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 580 chr1 33180865 33180969 + 0 NA intron (NM_018207, intron 1 of 4) CpG 1153 NM_018207 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 12731 chr17 56699594 56699698 + 0 NA Intergenic Penelope1_Vert|LINE|Penelope 105947 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 16074 chr2 105790862 105790948 + 0 NA intron (NM_001004722, intron 1 of 3) intron (NM_001004722, intron 1 of 3) 45842 NM_001004722 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 17571 chr20 10218817 10218921 + 0 NA promoter-TSS (NM_001322903) promoter-TSS (NM_001322903) 71 NM_130811 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 25362 chr6 152943604 152943708 + 0 NA Intergenic Tigger3|DNA|TcMar-Tigger 39426 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 6632 chr12 12883506 12883527 + 0 NA Intergenic Intergenic -7506 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 9858 chr15 34367573 34367677 + 0 NA promoter-TSS (NM_153613) promoter-TSS (NM_153613) -431 NM_153613 254531 Hs.352614 NM_153613 ENSG00000176454 LPCAT4 AGPAT7|AYTL3|LPAAT-eta|LPEAT2 lysophosphatidylcholine acyltransferase 4 protein-coding 10275 chr15 64460505 64460578 + 0 NA Intergenic CpG -38879 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 21294 chr4 38230543 38230647 + 0 NA Intergenic Intergenic 110641 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 11652 chr16 75376630 75376776 + 0 NA intron (NM_006324, intron 5 of 6) MER66B|LTR|ERV1 56786 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 29628 chr9 96566484 96566601 + 0 NA intron (NM_003671, intron 1 of 12) CpG 379 NM_001077181 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 16194 chr2 118123505 118123682 + 0 NA Intergenic Intergenic 35043 NM_001321329 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 28349 chr8 102655807 102655960 + 0 NA promoter-TSS (NM_005655) promoter-TSS (NM_005655) 19 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 21837 chr4 140373396 140373545 + 0 NA promoter-TSS (NR_033939) promoter-TSS (NR_033939) -40 NM_001153484 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 5103 chr11 32852330 32852434 + 0 NA intron (NM_024081, intron 5 of 5) intron (NM_024081, intron 5 of 5) 22447 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 14851 chr19 57578966 57579061 + 0 NA promoter-TSS (NM_017879) promoter-TSS (NM_017879) -138 NM_017879 55659 Hs.247711 NM_017879 ENSG00000083817 ZNF416 - zinc finger protein 416 protein-coding 11640 chr16 75109139 75109167 + 0 NA 3' UTR (NM_032268, exon 5 of 5) 3' UTR (NM_032268, exon 5 of 5) 7619 NM_153486 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLD lactate dehydrogenase D protein-coding 27902 chr8 59278053 59278157 + 0 NA Intergenic Intergenic -158897 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 24632 chr6 46983163 46983267 + 0 NA Intergenic Intergenic -28277 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 21315 chr4 41935095 41935199 + 0 NA promoter-TSS (NM_018126) promoter-TSS (NM_018126) 27 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 20984 chr3 192907899 192908085 + 0 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 10169 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 8627 chr13 110965392 110965540 + 0 NA promoter-TSS (NR_126378) promoter-TSS (NR_126378) -561 NR_126378 104355135 Hs.649708 NR_126378 LINC00431 - long intergenic non-protein coding RNA 431 ncRNA 15951 chr2 90401174 90401311 + 0 NA Intergenic Intergenic -763335 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 27928 chr8 61714633 61714650 + 0 NA promoter-TSS (NR_039680) promoter-TSS (NR_039680) -1 NM_032466 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 8000 chr13 26221825 26221940 + 0 NA promoter-TSS (NM_183044) promoter-TSS (NM_183044) 9 NM_183043 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 18338 chr20 58889082 58889122 + 0 NA promoter-TSS (NR_126334) promoter-TSS (NR_126334) -23 NM_001309840 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|POH|SCG6|SgVI GNAS complex locus protein-coding 10318 chr15 66803262 66803413 + 0 NA Intergenic Intergenic 101001 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 25876 chr7 24821482 24821632 + 0 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -63537 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 DFNA5 ICERE-1 DFNA5, deafness associated tumor suppressor protein-coding 14548 chr19 45370538 45370730 + 0 NA promoter-TSS (NM_001130867) promoter-TSS (NM_001130867) -47 NM_001130867 2068 Hs.487294 NM_000400 ENSG00000104884 ERCC2 COFS2|EM9|TFIIH|TTD|TTD1|XPD ERCC excision repair 2, TFIIH core complex helicase subunit protein-coding 18565 chr21 42615050 42615070 + 0 NA promoter-TSS (NR_131192) promoter-TSS (NR_131192) 35 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 8608 chr13 110347712 110347740 + 0 NA intron (NM_001846, intron 3 of 47) intron (NM_001846, intron 3 of 47) 6768 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 7513 chr12 100154937 100155041 + 0 NA Intergenic Intergenic -12125 NM_015054 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 13676 chr18 60892387 60892506 + 0 NA Intergenic MLT2B3|LTR|ERVL -441136 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 4439 chr10 117496645 117496842 + 0 NA intron (NR_002791, intron 2 of 3) intron (NR_002791, intron 2 of 3) -45702 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 16844 chr2 191305369 191305498 + 0 NA intron (NM_001130158, intron 3 of 30) intron (NM_001130158, intron 3 of 30) 60157 NM_001161819 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 29199 chr9 71911493 71911525 + 0 NA promoter-TSS (NM_016014) promoter-TSS (NM_016014) 2 NM_182505 138241 Hs.534190 NM_182505 ENSG00000155621 C9orf85 - chromosome 9 open reading frame 85 protein-coding 26028 chr7 34133455 34133559 + 0 NA intron (NM_133468, intron 14 of 15) MER21C|LTR|ERVL 228596 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 25554 chr7 2354811 2354915 + 0 NA promoter-TSS (NM_001037283) promoter-TSS (NM_001037283) 24 NM_003751 8662 Hs.371001 NM_003751 ENSG00000106263 EIF3B EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 eukaryotic translation initiation factor 3 subunit B protein-coding 7647 chr12 110370840 110371010 + 0 NA Intergenic Intergenic 32805 NM_001137664 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 29063 chr9 34989522 34989662 + 0 NA promoter-TSS (NR_109756) promoter-TSS (NR_109756) -49 NM_012266 25822 Hs.237506 NM_012266 ENSG00000137094 DNAJB5 Hsc40 DnaJ heat shock protein family (Hsp40) member B5 protein-coding 22098 chr4 184748417 184748549 + 0 NA Intergenic Intergenic -14351 NR_104593 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 19742 chr3 98922856 98922995 + 0 NA Intergenic Intergenic -21236 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 4629 chr10 132094952 132095106 + 0 NA intron (NM_001323090, intron 1 of 23) L1PBa1|LINE|L1 29062 NM_001323090 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 19682 chr3 83934605 83934709 + 0 NA Intergenic MER61E|LTR|ERV1 934918 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 5104 chr11 32892483 32892607 + 0 NA promoter-TSS (NM_001076786) promoter-TSS (NM_001076786) -633 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 10301 chr15 65792327 65792469 + 0 NA promoter-TSS (NM_001144823) promoter-TSS (NM_001144823) -105 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 26125 chr7 41940826 41940930 + 0 NA Intergenic Intergenic -237770 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin beta A subunit protein-coding 968 chr1 59879673 59879777 + 0 NA Intergenic Intergenic 47073 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 30743 chrX 53684093 53684197 + 0 NA intron (NM_031407, intron 2 of 83) CpG 2584 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding 25080 chr6 122399414 122399573 + 0 NA promoter-TSS (NM_001243094) promoter-TSS (NM_001243094) -58 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 675 chr1 39159301 39159405 + 0 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 75186 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 19414 chr3 42581997 42582149 + 0 NA promoter-TSS (NM_001201584) promoter-TSS (NM_001201584) -45 NM_004206 9117 Hs.445892 NM_004206 ENSG00000093183 SEC22C SEC22L3 SEC22 homolog C, vesicle trafficking protein protein-coding 7300 chr12 77324732 77324872 + 0 NA Intergenic Intergenic -259222 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 25356 chr6 152273851 152273955 + 0 NA intron (NM_182961, intron 98 of 145) intron (NM_182961, intron 98 of 145) -88525 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 20347 chr3 146582138 146582290 + 0 NA intron (NM_001321245, intron 7 of 7) MER61E|LTR|ERV1 24002 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 21189 chr4 13907391 13907488 + 0 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) -204529 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 19255 chr3 23741237 23741383 + 0 NA Intergenic Intergenic -64583 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 25718 chr7 14748568 14748672 + 0 NA intron (NM_145695, intron 3 of 23) L2a|LINE|L2 92830 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 26014 chr7 33722469 33722613 + 0 NA Intergenic Intergenic -182370 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 25234 chr6 140367097 140367201 + 0 NA Intergenic MER21C|LTR|ERVL 161897 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 20495 chr3 157128402 157128548 + 0 NA Intergenic Intergenic -5473 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 21482 chr4 78551613 78551747 + 0 NA promoter-TSS (NM_005139) promoter-TSS (NM_005139) 92 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 18444 chr21 28633112 28633239 + 0 NA Intergenic Intergenic 93857 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 24108 chr6 16652072 16652222 + 0 NA intron (NM_001128164, intron 3 of 7) intron (NM_001128164, intron 3 of 7) -108991 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 2846 chr1 226062634 226062738 + 0 NA promoter-TSS (NM_002107) promoter-TSS (NM_002107) -21 NM_002107 3020 Hs.533624 NM_002107 ENSG00000163041 H3F3A H3.3A|H3F3 H3 histone family member 3A protein-coding 30237 chr9 129642288 129642392 + 0 NA promoter-TSS (NM_177999) promoter-TSS (NM_177999) -171 NM_001202403 140459 Hs.125037 NM_017873 ENSG00000148331 ASB6 - ankyrin repeat and SOCS box containing 6 protein-coding 20174 chr3 133444279 133444383 + 0 NA intron (NR_135276, intron 4 of 4) MIRb|SINE|MIR 11445 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 30817 chrX 71365965 71366058 + 0 NA promoter-TSS (NM_001286074) promoter-TSS (NM_001286074) -228 NR_104391 6872 Hs.158560 NM_004606 ENSG00000147133 TAF1 BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP TATA-box binding protein associated factor 1 protein-coding 7019 chr12 52147566 52147632 + 0 NA Intergenic Intergenic 44401 NM_182507 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 13653 chr18 59359273 59359411 + 0 NA promoter-TSS (NM_005570) promoter-TSS (NM_005570) -66 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 24146 chr6 19268202 19268356 + 0 NA Intergenic Intergenic -87799 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 17725 chr20 19914328 19914447 + 0 NA intron (NM_018993, intron 1 of 10) intron (NM_018993, intron 1 of 10) 24821 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 17706 chr20 18587807 18588018 + 0 NA promoter-TSS (NM_001318043) promoter-TSS (NM_001318043) 19 NM_001318043 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DUE-B|DUEB|HARS2|pqn-68 D-tyrosyl-tRNA deacylase 1 protein-coding 3863 chr10 71860526 71860630 + 0 NA Intergenic Intergenic -9203 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 9748 chr14 104985696 104985804 + 0 NA promoter-TSS (NM_174891) promoter-TSS (NM_174891) -529 NM_174891 122616 Hs.27183 NM_174891 ENSG00000140104 C14orf79 - chromosome 14 open reading frame 79 protein-coding 3008 chr1 235128818 235128947 + 0 NA promoter-TSS (NR_002956) promoter-TSS (NR_002956) 59 NM_014765 9804 Hs.533192 NM_014765 ENSG00000173726 TOMM20 MAS20|MOM19|TOM20 translocase of outer mitochondrial membrane 20 protein-coding 11382 chr16 55470809 55470835 + 0 NA Intergenic Intergenic -8008 NM_001302508 4313 Hs.513617 NM_004530 ENSG00000087245 MMP2 CLG4|CLG4A|MMP-2|MMP-II|MONA|TBE-1 matrix metallopeptidase 2 protein-coding 7958 chr13 21683157 21683262 + 0 NA intron (NM_002010, intron 2 of 2) intron (NM_002010, intron 2 of 2) 12133 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 7725 chr12 118372995 118373137 + 0 NA promoter-TSS (NM_016281) promoter-TSS (NM_016281) -121 NM_001346491 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 4377 chr10 113087411 113087564 + 0 NA intron (NM_001198531, intron 5 of 12) intron (NM_001198531, intron 5 of 12) 42132 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 4000 chr10 83983740 83983844 + 0 NA Intergenic Intergenic -155637 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 1293 chr1 91165389 91165489 + 0 NA Intergenic Intergenic -143184 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 28615 chr8 126547377 126547522 + 0 NA Intergenic Intergenic 11017 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 10804 chr15 99928447 99928649 + 0 NA Intergenic CpG 121525 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 12883 chr17 67246735 67246839 + 0 NA intron (NR_136398, intron 1 of 3) intron (NR_136398, intron 1 of 3) -1583 NM_001330447 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 30377 chr9 137086773 137086808 + 0 NA promoter-TSS (NM_016219) promoter-TSS (NM_016219) 27 NR_027447 100289341 Hs.593896 NR_027447 ENSG00000268996 MAN1B1-AS1 - MAN1B1 antisense RNA 1 (head to head) ncRNA 8818 chr14 33404195 33404330 + 0 NA intron (NM_001164749, intron 4 of 11) intron (NM_001164749, intron 4 of 11) -304675 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 29165 chr9 70413971 70414163 + 0 NA 5' UTR (NM_001206, exon 1 of 2) 5' UTR (NM_001206, exon 1 of 2) 590 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 19983 chr3 119240867 119241018 + 0 NA promoter-TSS (NM_003778) promoter-TSS (NM_003778) -37 NM_212543 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 28710 chr8 132768657 132768761 + 0 NA Intergenic Intergenic -6649 NM_198513 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20-like 1 protein-coding 13315 chr18 23101877 23102017 + 0 NA Intergenic Intergenic -32617 NM_001256438 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 24374 chr6 31729740 31729844 + 0 NA promoter-TSS (NM_001303008).2 promoter-TSS (NM_001303008).2 -291 NM_001303008 23564 Hs.247362 NM_013974 ENSG00000213722 DDAH2 DDAH|DDAHII|G6a|HEL-S-277|NG30 dimethylarginine dimethylaminohydrolase 2 protein-coding 4789 chr11 9210923 9211040 + 0 NA intron (NM_015213, intron 1 of 22) L1MEf|LINE|L1 54345 NM_001243254 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A RAB6IP1 DENN domain containing 5A protein-coding 21903 chr4 151417208 151417366 + 0 NA intron (NM_001109977, intron 1 of 13) MER51A|LTR|ERV1 8041 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 1518 chr1 112251830 112251931 + 0 NA Intergenic Intergenic -144298 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 28380 chr8 104418134 104418238 + 0 NA intron (NM_001385, intron 7 of 9) intron (NM_001385, intron 7 of 9) 48863 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 25600 chr7 5513756 5513884 + 0 NA promoter-TSS (NM_001321213) promoter-TSS (NM_001321213) -22 NM_001321213 80028 Hs.623974 NM_024963 ENSG00000155034 FBXL18 Fbl18 F-box and leucine rich repeat protein 18 protein-coding 11788 chr16 85390895 85391029 + 0 NA Intergenic Intergenic -84637 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 17002 chr2 207810950 207811054 + 0 NA Intergenic Intergenic -41583 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 16715 chr2 177266744 177266764 + 0 NA Intergenic Intergenic -1623 NM_001313903 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 6267 chr11 124746930 124747039 + 0 NA TTS (NM_014312) TTS (NM_014312) 5288 NM_001329920 23584 Hs.112377 NM_014312 ENSG00000019102 VSIG2 2210413P10Rik|CTH|CTXL V-set and immunoglobulin domain containing 2 protein-coding 17960 chr20 37178394 37178512 + 0 NA promoter-TSS (NM_002951) promoter-TSS (NM_002951) -593 NM_001324303 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 10771 chr15 95932883 95932987 + 0 NA Intergenic L2a|LINE|L2 -392993 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 29679 chr9 98811135 98811285 + 0 NA intron (NM_024642, intron 1 of 9) intron (NM_024642, intron 1 of 9) 3511 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 28802 chr8 143055895 143056041 + 0 NA Intergenic Intergenic 15606 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 16586 chr2 164737822 164737926 + 0 NA intron (NM_001278460, intron 3 of 13) intron (NM_001278460, intron 3 of 13) -50097 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 30242 chr9 129762136 129762290 + 0 NA Intergenic Intergenic -9148 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 8394 chr13 77521333 77521471 + 0 NA Intergenic Intergenic -14272 NM_144777 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 15100 chr2 17590621 17590654 + 0 NA intron (NM_003385, intron 1 of 3) intron (NM_003385, intron 1 of 3) 50097 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 1374 chr1 97277964 97278129 + 0 NA intron (NR_046590, intron 2 of 4) intron (NR_046590, intron 2 of 4) 182123 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 14057 chr19 9796267 9796352 + 0 NA Intergenic MER66C|LTR|ERV1 22794 NM_001316942 54850 Hs.12439 NM_017703 ENSG00000127452 FBXL12 Fbl12 F-box and leucine rich repeat protein 12 protein-coding 2303 chr1 197485860 197486015 + 0 NA Intergenic Intergenic 217733 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs 1, cell polarity complex component protein-coding 9263 chr14 68191813 68191952 + 0 NA intron (NM_002877, intron 7 of 10) intron (NM_002877, intron 7 of 10) 368290 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 19728 chr3 98502098 98502177 + 0 NA Intergenic Intergenic 4456 NM_001004737 402135 Hs.632558 NM_001004737 ENSG00000231861 OR5K2 OR3-9 olfactory receptor family 5 subfamily K member 2 protein-coding 27766 chr8 47260811 47261000 + 0 NA promoter-TSS (NM_001080394) promoter-TSS (NM_001080394) 27 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 9651 chr14 99274637 99274741 + 0 NA Intergenic Intergenic -2976 NM_001282237 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 22964 chr5 103562604 103562622 + 0 NA intron (NM_031438, intron 1 of 6) intron (NM_031438, intron 1 of 6) 188 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 16449 chr2 149366359 149366480 + 0 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 35904 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 28731 chr8 133571953 133572057 + 0 NA promoter-TSS (NM_173344) promoter-TSS (NM_173344) -65 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 28180 chr8 90859165 90859269 + 0 NA intron (NM_022351, intron 3 of 12) LOR1-int|LTR|ERV1 67524 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 1972 chr1 164660269 164660401 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 100975 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 9872 chr15 36393015 36393119 + 0 NA Intergenic MIRc|SINE|MIR -186536 NM_001321756 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 12510 chr17 41965930 41966128 + 0 NA promoter-TSS (NM_033133) promoter-TSS (NM_033133) -712 NM_033133 1267 Hs.273621 NM_033133 ENSG00000173786 CNP CNP1 2',3'-cyclic nucleotide 3' phosphodiesterase protein-coding 29782 chr9 107650107 107650114 + 0 NA Intergenic Intergenic -160390 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 15926 chr2 86440742 86440843 + 0 NA promoter-TSS (NM_018433) promoter-TSS (NM_018433) -356 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 21229 chr4 21656915 21657019 + 0 NA intron (NM_147182, intron 2 of 8) L2c|LINE|L2 40728 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 21 chr1 1471636 1471785 + 0 NA promoter-TSS (NM_031921) promoter-TSS (NM_031921) -45 NM_031921 83858 Hs.729021 NM_031921 ENSG00000160072 ATAD3B AAA-TOB3|TOB3 ATPase family, AAA domain containing 3B protein-coding 22972 chr5 106397789 106397975 + 0 NA Intergenic Intergenic 613132 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 4862 chr11 13160921 13160953 + 0 NA Intergenic Intergenic -116790 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 523 chr1 31416463 31416567 + 0 NA intron (NM_001199039, intron 2 of 10) intron (NM_001199039, intron 2 of 10) 2702 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 15419 chr2 42133095 42133256 + 0 NA Intergenic Intergenic -36163 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 25935 chr7 27740770 27740899 + 0 NA intron (NM_001079864, intron 1 of 16) CpG 739 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 10047 chr15 48680970 48681092 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -35243 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 11649 chr16 75305423 75305582 + 0 NA intron (NM_006324, intron 5 of 6) MIR|SINE|MIR -37449 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 25952 chr7 29285519 29285693 + 0 NA intron (NM_001293072, intron 1 of 12) L3|LINE|CR1 -76636 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 1202 chr1 85201016 85201089 + 0 NA promoter-TSS (NM_032184) promoter-TSS (NM_032184) -7 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 12751 chr17 57375866 57376008 + 0 NA intron (NM_170721, intron 4 of 9) intron (NM_170721, intron 4 of 9) 118924 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 2838 chr1 225809974 225810115 + 0 NA promoter-TSS (NM_001291163) promoter-TSS (NM_001291163) -30 NM_001136018 2052 Hs.89649 NM_000120 ENSG00000143819 EPHX1 EPHX|EPOX|HYL1|MEH epoxide hydrolase 1 protein-coding 17774 chr20 23136988 23137136 + 0 NA Intergenic Intergenic -4426 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 23569 chr5 154180235 154180339 + 0 NA Intergenic Intergenic -10448 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 23306 chr5 138482718 138482800 + 0 NA Intergenic L2c|LINE|L2 17267 NM_001964 1958 Hs.326035 NM_001964 ENSG00000120738 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 20370 chr3 149386575 149386720 + 0 NA TTS (NR_046650) TTS (NR_046650) -8866 NM_014220 4071 Hs.351316 NM_014220 ENSG00000169908 TM4SF1 H-L6|L6|M3S1|TAAL6 transmembrane 4 L six family member 1 protein-coding 8564 chr13 106349479 106349583 + 0 NA Intergenic Intergenic -27032 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 2926 chr1 230268987 230269001 + 0 NA intron (NM_001291866, intron 14 of 15) intron (NM_001291866, intron 14 of 15) 156934 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 14817 chr19 55472539 55472702 + 0 NA Intergenic Intergenic -3712 NM_033113 89887 Hs.525209 NM_033113 ENSG00000197483 ZNF628 ZEC|Zfp628 zinc finger protein 628 protein-coding 10702 chr15 90402432 90402536 + 0 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 14243 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 11915 chr17 2353119 2353269 + 0 NA intron (NM_014853, intron 2 of 23) intron (NM_014853, intron 2 of 23) 15680 NM_001098509 9905 Hs.513861 NM_014853 ENSG00000141258 SGSM2 RUTBC1 small G protein signaling modulator 2 protein-coding 835 chr1 47325698 47325823 + 0 NA Intergenic Intergenic -8037 NM_016308 51727 Hs.731647 NM_016308 ENSG00000162368 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine/uridine monophosphate kinase 1 protein-coding 11084 chr16 19136335 19136340 + 0 NA Intergenic LTR16C|LTR|ERVL 22405 NR_028028 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein like 2 protein-coding 12700 chr17 51461718 51461823 + 0 NA Intergenic LTR50|LTR|ERVL 125055 NR_122104 440446 Hs.626751 NR_122104 ENSG00000225860 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 30094 chr9 124779382 124779486 + 0 NA intron (NM_182487, intron 1 of 7) intron (NM_182487, intron 1 of 7) 2276 NM_182487 169611 Hs.357004 NM_182487 ENSG00000185585 OLFML2A PRO34319 olfactomedin like 2A protein-coding 25897 chr7 25862632 25862686 + 0 NA Intergenic Intergenic 87327 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 23445 chr5 146815611 146815715 + 0 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 63122 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 16044 chr2 101742193 101742341 + 0 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 44191 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 1267 chr1 88992602 88992688 + 0 NA 5' UTR (NM_001008661, exon 1 of 14) 5' UTR (NM_001008661, exon 1 of 14) 315 NM_019610 494115 Hs.481898 NM_019610 ENSG00000213516 RBMXL1 RBM1 RNA binding motif protein, X-linked like 1 protein-coding 26443 chr7 76069324 76069413 + 0 NA Intergenic Intergenic 21349 NM_005918 4191 Hs.520967 NM_005918 ENSG00000146701 MDH2 M-MDH|MDH|MGC:3559|MOR1 malate dehydrogenase 2 protein-coding 16354 chr2 134406471 134406575 + 0 NA intron (NM_002410, intron 11 of 15) intron (NM_002410, intron 11 of 15) 152264 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 15325 chr2 32627981 32628147 + 0 NA promoter-TSS (NM_001193509) promoter-TSS (NM_001193509) 44 NM_017735 55622 Hs.468125 NM_017735 ENSG00000018699 TTC27 - tetratricopeptide repeat domain 27 protein-coding 113 chr1 8197890 8197994 + 0 NA Intergenic Intergenic -10730 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 29508 chr9 90344074 90344136 + 0 NA intron (NR_109795, intron 2 of 2) intron (NR_109795, intron 2 of 2) 89384 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 29910 chr9 113401391 113401620 + 0 NA promoter-TSS (NM_001317745) promoter-TSS (NM_001317745) -167 NM_000031 210 Hs.1227 NM_000031 ENSG00000148218 ALAD ALADH|PBGS aminolevulinate dehydratase protein-coding 23990 chr6 8102236 8102363 + 0 NA intron (NR_037618, intron 1 of 6) CpG 296 NM_001135650 9521 Hs.602353 NM_004280 ENSG00000124802 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 12025 chr17 7239716 7239851 + 0 NA promoter-TSS (NM_001284518) promoter-TSS (NM_001284518) -277 NM_024297 79142 Hs.644724 NM_024297 ENSG00000040633 PHF23 hJUNE-1b PHD finger protein 23 protein-coding 18210 chr20 51258600 51258758 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 194298 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 17398 chr2 241150259 241150363 + 0 NA promoter-TSS (NM_001252124) promoter-TSS (NM_001252124) -332 NM_001252120 23178 Hs.397891 NM_015148 ENSG00000115687 PASK PASKIN|STK37 PAS domain containing serine/threonine kinase protein-coding 27100 chr7 139360378 139360523 + 0 NA intron (NM_016019, intron 1 of 9) CpG 604 NM_001270643 51631 Hs.731488 NM_016019 ENSG00000146963 LUC7L2 CGI-59|CGI-74|LUC7B2 LUC7 like 2, pre-mRNA splicing factor protein-coding 6388 chr11 132633011 132633115 + 0 NA intron (NM_001319104, intron 2 of 6) intron (NM_001319104, intron 2 of 6) 310574 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 9639 chr14 98077301 98077464 + 0 NA Intergenic Intergenic -99258 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 28817 chr8 143684340 143684518 + 0 NA promoter-TSS (NM_001100598) promoter-TSS (NM_001100598) -23 NM_001100598 286075 Hs.521922 NM_173831 ENSG00000181135 ZNF707 - zinc finger protein 707 protein-coding 20770 chr3 182165420 182165517 + 0 NA Intergenic Intergenic 213104 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 24884 chr6 85678703 85678829 + 0 NA promoter-TSS (NR_003038) promoter-TSS (NR_003038) -33 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2 small nucleolar RNA host gene 5 ncRNA 20478 chr3 156626242 156626319 + 0 NA Intergenic LTR18A|LTR|ERVL -48136 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 18853 chr22 36482018 36482101 + 0 NA promoter-TSS (NM_012473) promoter-TSS (NM_012473) -419 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 6049 chr11 110305698 110305852 + 0 NA Intergenic Intergenic -9063 NM_002906 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 29811 chr9 108744057 108744113 + 0 NA Intergenic Intergenic 111910 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 12750 chr17 57370280 57370335 + 0 NA intron (NM_170721, intron 4 of 9) MamRep434|DNA|TcMar-Tigger 113294 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 28321 chr8 101012697 101012849 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger -39281 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 12797 chr17 60373251 60373355 + 0 NA intron (NM_032582, intron 1 of 33) Tigger3b|DNA|TcMar-Tigger 18922 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 8440 chr13 91347415 91347519 + 0 NA promoter-TSS (NR_027349) promoter-TSS (NR_027349) -353 NR_027350 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 14341 chr19 32405546 32405707 + 0 NA promoter-TSS (NR_046201) promoter-TSS (NR_046201) -87 NR_046201 400684 Hs.438766 NR_046201 ENSG00000267213 LOC400684 - uncharacterized LOC400684 ncRNA 17916 chr20 35171930 35172034 + 0 NA promoter-TSS (NM_006404) promoter-TSS (NM_006404) 45 NM_006404 10544 Hs.647450 NM_006404 ENSG00000101000 PROCR CCCA|CCD41|EPCR protein C receptor protein-coding 7624 chr12 109052412 109052588 + 0 NA promoter-TSS (NM_032663) promoter-TSS (NM_032663) -70 NM_032663 84749 Hs.486434 NM_032663 ENSG00000135093 USP30 - ubiquitin specific peptidase 30 protein-coding 21286 chr4 37648290 37648394 + 0 NA intron (NM_001085400, intron 2 of 6) intron (NM_001085400, intron 2 of 6) 38035 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 27083 chr7 138460056 138460069 + 0 NA promoter-TSS (NM_003852) promoter-TSS (NM_003852) -272 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 507 chr1 30649544 30649706 + 0 NA Intergenic Intergenic -69147 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 10744 chr15 93566874 93566891 + 0 NA Intergenic Intergenic -289678 NR_120321 101927153 Hs.371900 NR_120321 LOC101927153 - uncharacterized LOC101927153 ncRNA 14728 chr19 50896667 50896766 + 0 NA promoter-TSS (NR_002948) promoter-TSS (NR_002948) -318 NR_002948 606293 Hs.643424 NR_002948 ENSG00000197588 KLKP1 KARMA|KLK31P|KRSP1|PsiKLK1|YKLK1 kallikrein pseudogene 1 pseudo 15255 chr2 28276193 28276343 + 0 NA intron (NR_137440, intron 10 of 13) intron (NR_137440, intron 10 of 13) 34191 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 16615 chr2 168456111 168456215 + 0 NA promoter-TSS (NM_001256126) promoter-TSS (NM_001256126) -86 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 25672 chr7 10940401 10940548 + 0 NA promoter-TSS (NM_002489) promoter-TSS (NM_002489) -288 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|MLRQ NDUFA4, mitochondrial complex associated protein-coding 25041 chr6 116071161 116071255 + 0 NA Intergenic Intergenic -10450 NM_002031 2444 Hs.89426 NM_002031 ENSG00000111816 FRK GTK|PTK5|RAK fyn related Src family tyrosine kinase protein-coding 23500 chr5 149805955 149806071 + 0 NA intron (NM_001172699, intron 1 of 10) intron (NM_001172699, intron 1 of 10) 34073 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 3565 chr10 34528374 34528478 + 0 NA intron (NM_001184791, intron 2 of 20) intron (NM_001184791, intron 2 of 20) 286899 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 11281 chr16 46859989 46860093 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -24339 NM_133443 84706 Hs.460693 NM_133443 ENSG00000166123 GPT2 ALT2|GPT 2|MRT49 glutamic--pyruvic transaminase 2 protein-coding 26608 chr7 93719688 93719792 + 0 NA Intergenic Intergenic 2812 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 20458 chr3 155131275 155131408 + 0 NA intron (NM_007289, intron 8 of 22) intron (NM_007289, intron 8 of 22) 51051 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 15167 chr2 23481065 23481227 + 0 NA intron (NM_052920, intron 2 of 13) MER5B|DNA|hAT-Charlie 95719 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 27286 chr7 157310252 157310264 + 0 NA Intergenic Intergenic -26758 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 1258 chr1 88398405 88398509 + 0 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -285687 NM_001320709 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 19646 chr3 69200771 69200922 + 0 NA intron (NM_015123, intron 11 of 22) intron (NM_015123, intron 11 of 22) -78251 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 12077 chr17 8222906 8223036 + 0 NA non-coding (NR_026951, exon 2 of 3) non-coding (NR_026951, exon 2 of 3) 1072 NR_026951 284029 Hs.121692 NM_173621 ENSG00000178977 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 14314 chr19 23250430 23250566 + 0 NA promoter-TSS (NR_045525) promoter-TSS (NR_045525) -128 NR_045525 440519 Hs.675814 NR_045525 ZNF724 ZNF724P zinc finger protein 724 pseudo 27384 chr8 10756907 10757023 + 0 NA Intergenic Intergenic -26391 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box 7 protein-coding 24557 chr6 42279323 42279427 + 0 NA intron (NM_001297573, intron 4 of 17) intron (NM_001297573, intron 4 of 17) -61480 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 7009 chr12 51239146 51239157 + 0 NA intron (NM_001136267, intron 1 of 3) CpG 427 NM_001136267 9802 Hs.369761 NM_014764 ENSG00000183283 DAZAP2 PRTB DAZ associated protein 2 protein-coding 2313 chr1 198121224 198121328 + 0 NA Intergenic Intergenic -35702 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 23170 chr5 128579359 128579453 + 0 NA Intergenic Intergenic -41364 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 27835 chr8 53521132 53521236 + 0 NA Intergenic HERV3-int|LTR|ERV1 -269487 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 26490 chr7 80499416 80499560 + 0 NA intron (NM_001102386, intron 1 of 7) AluJb|SINE|Alu 12521 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 3653 chr10 48251663 48251808 + 0 NA promoter-TSS (NM_001318191) promoter-TSS (NM_001318191) 22 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 12614 chr17 47936046 47936150 + 0 NA intron (NR_103857, intron 1 of 2) intron (NR_103857, intron 1 of 2) 5306 NR_103857 100506325 Hs.656008 NR_103856 ENSG00000234494 SP2-AS1 - SP2 antisense RNA 1 ncRNA 12146 chr17 16584356 16584499 + 0 NA Intergenic CpG -15215 NM_001346171 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 28717 chr8 133037022 133037126 + 0 NA 3' UTR (NM_001282964, exon 7 of 7) 3' UTR (NM_001282964, exon 7 of 7) 9507 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 3354 chr10 17230113 17230277 + 0 NA promoter-TSS (NR_108061) promoter-TSS (NR_108061) -210 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 27494 chr8 20197300 20197407 + 0 NA 5' UTR (NM_001693, exon 1 of 14) 5' UTR (NM_001693, exon 1 of 14) 160 NM_001693 526 Hs.295917 NM_001693 ENSG00000147416 ATP6V1B2 ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2 ATPase H+ transporting V1 subunit B2 protein-coding 25537 chr7 1169828 1169932 + 0 NA Intergenic Intergenic 9095 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 10941 chr16 4271850 4271982 + 0 NA intron (NM_003223, intron 1 of 6) CpG 1084 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 12707 chr17 52103349 52103447 + 0 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 55374 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 29816 chr9 109012365 109012469 + 0 NA intron (NM_003798, intron 1 of 18) intron (NM_003798, intron 1 of 18) 1177 NM_001286974 8727 Hs.58488 NM_003798 ENSG00000119326 CTNNAL1 ACRP|CLLP|alpha-CATU catenin alpha like 1 protein-coding 6895 chr12 42757109 42757213 + 0 NA Intergenic Intergenic 64945 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LOC105369739 - uncharacterized LOC105369739 ncRNA 28874 chr9 1458594 1458821 + 0 NA Intergenic Intergenic 408087 NM_181872 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 10326 chr15 67065598 67065702 + 0 NA promoter-TSS (NM_005902) promoter-TSS (NM_005902) -207 NM_005902 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 7784 chr12 121786528 121786644 + 0 NA intron (NM_019034, intron 2 of 4) L2a|LINE|L2 7102 NM_019034 54509 Hs.707579 NM_019034 ENSG00000139725 RHOF ARHF|RIF ras homolog family member F, filopodia associated protein-coding 12943 chr17 72416461 72416560 + 0 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 73699 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 23371 chr5 141560916 141561020 + 0 NA intron (NR_038333, intron 1 of 2) intron (NR_038333, intron 1 of 2) 2657 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 18580 chr21 43740902 43741118 + 0 NA promoter-TSS (NM_001331030) promoter-TSS (NM_001331030) -374 NM_001331030 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 7294 chr12 77065573 77065727 + 0 NA promoter-TSS (NM_203394) promoter-TSS (NM_203394) -70 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 2110 chr1 176949184 176949281 + 0 NA exon (NM_001286164, exon 12 of 23) exon (NM_001286164, exon 12 of 23) 80213 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 25960 chr7 30134891 30135045 + 0 NA promoter-TSS (NM_152793) promoter-TSS (NM_152793) 32 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 1968 chr1 164611917 164612133 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 52665 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 22254 chr5 14660406 14660539 + 0 NA Intergenic AluJr4|SINE|Alu -4173 NM_138348 90268 Hs.406335 NM_138348 ENSG00000154124 OTULIN AIPDS|FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 25868 chr7 23895886 23895990 + 0 NA Intergenic Intergenic 185612 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 4065 chr10 91410270 91410376 + 0 NA promoter-TSS (NR_104291) promoter-TSS (NR_104291) 38 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 4009 chr10 84537521 84537625 + 0 NA Intergenic Intergenic 112391 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 25808 chr7 20407866 20407970 + 0 NA intron (NM_002214, intron 12 of 13) intron (NM_002214, intron 12 of 13) -76156 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 5660 chr11 74171031 74171239 + 0 NA promoter-TSS (NM_001286577) promoter-TSS (NM_001286577) 72 NM_016147 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 PME-1 protein phosphatase methylesterase 1 protein-coding 18594 chr21 46228849 46228975 + 0 NA promoter-TSS (NR_110565) promoter-TSS (NR_110565) -88 NM_002340 4047 Hs.596543 NM_002340 ENSG00000160285 LSS CTRCT44|OSC lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) protein-coding 10660 chr15 89197552 89197683 + 0 NA 3' UTR (NM_007011, exon 15 of 15) 3' UTR (NM_007011, exon 15 of 15) 24074 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 10391 chr15 71115663 71115731 + 0 NA promoter-TSS (NM_001102658) promoter-TSS (NM_001102658) -197 NM_001102658 196993 Hs.646533 NM_001102658 ENSG00000225362 CT62 - cancer/testis antigen 62 protein-coding 23557 chr5 151896506 151896594 + 0 NA intron (NM_001146040, intron 1 of 8) intron (NM_001146040, intron 1 of 8) 28286 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 10107 chr15 52031671 52031775 + 0 NA intron (NM_002748, intron 1 of 5) AluJb|SINE|Alu 12509 NM_002748 5597 Hs.411847 NM_002748 ENSG00000069956 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 30519 chrX 15619510 15619614 + 0 NA intron (NR_126564, intron 1 of 1) intron (NR_126564, intron 1 of 1) 16681 NR_126564 104798195 Hs.131674 NR_126564 ENSG00000225833 GS1-594A7.3 - uncharacterized LOC104798195 ncRNA 1355 chr1 95072677 95072763 + 0 NA intron (NM_144988, intron 1 of 3) CpG 231 NR_131032 199857 Hs.408927 NM_144988 ENSG00000172339 ALG14 CMS15 ALG14, UDP-N-acetylglucosaminyltransferase subunit protein-coding 3640 chr10 46023408 46023569 + 0 NA promoter-TSS (NM_005437) promoter-TSS (NM_005437) -30 NM_005437 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 27437 chr8 16826092 16826252 + 0 NA Intergenic Intergenic 175993 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 8084 chr13 33120192 33120216 + 0 NA intron (NM_178006, intron 7 of 13) intron (NM_178006, intron 7 of 13) 65875 NM_001243466 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 9984 chr15 43133515 43133527 + 0 NA promoter-TSS (NM_024956) promoter-TSS (NM_024956) -3 NM_001347027 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 12321 chr17 31901699 31901895 + 0 NA promoter-TSS (NM_018428) promoter-TSS (NM_018428) -87 NM_018428 55813 Hs.589862 NM_018428 ENSG00000108651 UTP6 C17orf40|HCA66 UTP6, small subunit processome component protein-coding 20803 chr3 183825664 183825713 + 0 NA promoter-TSS (NM_024871) promoter-TSS (NM_024871) -83 NM_024871 79929 Hs.478465 NM_024871 ENSG00000180834 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 2043 chr1 168907254 168907377 + 0 NA intron (NR_104091, intron 4 of 4) intron (NR_104091, intron 4 of 4) 120374 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 29335 chr9 79023219 79023323 + 0 NA Intergenic Intergenic 122395 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 7893 chr12 131454859 131454963 + 0 NA Intergenic Intergenic 107441 NR_103736 338797 Hs.592007 NM_001025466 LOC338797 - uncharacterized LOC338797 ncRNA 9437 chr14 77663391 77663533 + 0 NA Intergenic L2c|LINE|L2 44551 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB homolog 1, histone H2A dioxygenase protein-coding 27800 chr8 49795594 49795775 + 0 NA Intergenic LTR8B|LTR|ERV1 -114042 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 14425 chr19 38683743 38683816 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 36163 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 17090 chr2 217105817 217105921 + 0 NA Intergenic Intergenic -176864 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 9815 chr15 31016733 31016837 + 0 NA intron (NM_001252020, intron 26 of 26) intron (NM_001252020, intron 26 of 26) -25181 NM_017762 54893 Hs.30141 NM_017762 ENSG00000166912 MTMR10 - myotubularin related protein 10 protein-coding 8064 chr13 30796280 30796431 + 0 NA Intergenic Intergenic -6851 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 22055 chr4 177759882 177759986 + 0 NA intron (NR_028342, intron 2 of 5) AluJr|SINE|Alu 31177 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 11374 chr16 54657463 54657567 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 190718 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 12454 chr17 40176488 40176612 + 0 NA promoter-TSS (NM_001303533) promoter-TSS (NM_001303533) -460 NM_001303533 51195 Hs.632254 NM_016339 ENSG00000108352 RAPGEFL1 Link-GEFII Rap guanine nucleotide exchange factor like 1 protein-coding 16614 chr2 168278551 168278655 + 0 NA Intergenic Intergenic -31008 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 12126 chr17 15651778 15651883 + 0 NA 5' UTR (NM_006470, exon 4 of 9) 5' UTR (NM_006470, exon 4 of 9) 31049 NM_006470 10626 Hs.123534 NM_006470 ENSG00000221926 TRIM16 EBBP tripartite motif containing 16 protein-coding 30966 chrX 110002606 110002691 + 0 NA promoter-TSS (NM_017698) promoter-TSS (NM_017698) 13 NM_017698 84187 Hs.496572 NM_017698 ENSG00000157600 TMEM164 bB360B22.3 transmembrane protein 164 protein-coding 5255 chr11 47767372 47767560 + 0 NA promoter-TSS (NM_015308) promoter-TSS (NM_015308) 12 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 13832 chr19 342872 342976 + 0 NA intron (NM_017550, intron 1 of 13) MIRb|SINE|MIR 1917 NM_017550 54531 Hs.101891 NM_017550 ENSG00000105556 MIER2 KIAA1193|Mi-er2 MIER family member 2 protein-coding 5216 chr11 45180932 45181091 + 0 NA intron (NM_001256695, intron 1 of 7) CpG 33668 NM_001256695 56981 Hs.178715 NM_020229 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 26250 chr7 49174532 49174636 + 0 NA Intergenic Intergenic 250023 NR_003595 168448 Hs.567757 NM_152627 CDC14C CDC14B2|CDC14Bretro|CDC14CP cell division cycle 14C, pseuodgene pseudo 20451 chr3 154148704 154148806 + 0 NA intron (NM_015595, intron 4 of 14) intron (NM_015595, intron 4 of 14) 27395 NM_015595 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 1310 chr1 92785098 92785252 + 0 NA intron (NM_005665, intron 1 of 17) CpG 7229 NM_005665 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 16463 chr2 151049873 151049977 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR 211950 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 5901 chr11 95151522 95151664 + 0 NA non-coding (NR_110303, exon 1 of 3) non-coding (NR_110303, exon 1 of 3) 1054 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 8746 chr14 24036379 24036530 + 0 NA promoter-TSS (NR_102689) promoter-TSS (NR_102689) 42 NR_102694 728635 Hs.647569 NM_001082488 DHRS4L1 SDR25C4 dehydrogenase/reductase 4 like 1 protein-coding 15391 chr2 38767113 38767220 + 0 NA Intergenic MIR|SINE|MIR -11019 NM_024775 79833 Hs.143818 NM_024775 ENSG00000152147 GEMIN6 - gem nuclear organelle associated protein 6 protein-coding 19896 chr3 112773939 112774083 + 0 NA Intergenic Intergenic -24692 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 4578 chr10 125823497 125823601 + 0 NA promoter-TSS (NM_078468) promoter-TSS (NM_078468) 14 NM_078468 56647 Hs.370292 NM_016567 ENSG00000107949 BCCIP TOK-1|TOK1 BRCA2 and CDKN1A interacting protein protein-coding 30924 chrX 106708274 106708281 + 0 NA intron (NM_024539, intron 1 of 6) intron (NM_024539, intron 1 of 6) 14439 NM_024539 79589 Hs.496542 NM_024539 ENSG00000133135 RNF128 GRAIL ring finger protein 128, E3 ubiquitin protein ligase protein-coding 13068 chr17 78199022 78199156 + 0 NA intron (NM_001145526, intron 2 of 10) intron (NM_001145526, intron 2 of 10) 11772 NR_027083 125061 Hs.558614 NM_001010982 ENSG00000183077 AFMID FKF|KF|KFA arylformamidase protein-coding 28328 chr8 101126427 101126567 + 0 NA Intergenic CpG 74443 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 6306 chr11 126405460 126405564 + 0 NA promoter-TSS (NM_001254759) promoter-TSS (NM_001254759) -670 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 3035 chr1 236795135 236795294 + 0 NA promoter-TSS (NM_000254) promoter-TSS (NM_000254) -67 NM_001291939 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 20314 chr3 142828822 142828961 + 0 NA intron (NM_013363, intron 6 of 8) intron (NM_013363, intron 6 of 8) 60312 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 6939 chr12 47820039 47820143 + 0 NA promoter-TSS (NM_001308090) promoter-TSS (NM_001308090) -111 NM_001308090 51564 Hs.200063 NM_015401 ENSG00000061273 HDAC7 HD7|HD7A|HDAC7A histone deacetylase 7 protein-coding 14676 chr19 49114323 49114427 + 0 NA promoter-TSS (NM_001308419) promoter-TSS (NM_001308419) 14 NM_001308419 64130 Hs.221737 NM_022165 ENSG00000104863 LIN7B LIN-7B|MALS-2|MALS2|VELI2 lin-7 homolog B, crumbs cell polarity complex component protein-coding 28176 chr8 90645752 90645898 + 0 NA promoter-TSS (NM_001008495) promoter-TSS (NM_001008495) 80 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 27530 chr8 23224412 23224548 + 0 NA promoter-TSS (NR_033928) promoter-TSS (NR_033928) 687 NM_003844 8797 Hs.213467 NM_003844 ENSG00000104689 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 TNF receptor superfamily member 10a protein-coding 12691 chr17 50950789 50950919 + 0 NA Intergenic L2|LINE|L2 -82876 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 12865 chr17 65294292 65294428 + 0 NA Intergenic Intergenic 157022 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 14888 chr1_KI270713v1_random 21692 21834 + 0 NA TTS (NR_004408).4 TTS (NR_004408).4 261 NR_004400 26863 NR_004400 ENSG00000206737 RNVU1-18 RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18 RNA, variant U1 small nuclear 18 snRNA 15623 chr2 61144995 61145049 + 0 NA promoter-TSS (NM_001316317) promoter-TSS (NM_001316317) -46 NM_001143960 339804 Hs.140617 NM_001143959 ENSG00000237651 C2orf74 - chromosome 2 open reading frame 74 protein-coding 27994 chr8 70215409 70215513 + 0 NA intron (NM_001321703, intron 3 of 22) intron (NM_001321703, intron 3 of 22) -144134 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 27957 chr8 65842540 65842682 + 0 NA promoter-TSS (NM_001242318) promoter-TSS (NM_001242318) -877 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 22988 chr5 107806894 107806998 + 0 NA Intergenic Charlie10|DNA|hAT-Charlie -136051 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 19465 chr3 48268428 48268507 + 0 NA exon (NM_016089, exon 4 of 4) exon (NM_016089, exon 4 of 4) 23211 NR_134638 101060195 Hs.670746 NR_134638 FCF1P2 - FCF1 pseudogene 2 pseudo 9074 chr14 55889179 55889283 + 0 NA Intergenic Intergenic -92557 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 24470 chr6 36678609 36678738 + 0 NA promoter-TSS (NM_000389) promoter-TSS (NM_000389) -6 NM_000389 1026 Hs.370771 NM_000389 ENSG00000124762 CDKN1A CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1 cyclin dependent kinase inhibitor 1A protein-coding 1181 chr1 84361976 84362080 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 22773 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 7962 chr13 23445915 23446014 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -12236 NM_014363 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 6009 chr11 106706398 106706549 + 0 NA intron (NM_001256424, intron 8 of 8) intron (NM_001256424, intron 8 of 8) 311972 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 12544 chr17 43483763 43483911 + 0 NA promoter-TSS (NM_001322216) promoter-TSS (NM_001322216) -28 NM_001322219 1659 Hs.463105 NM_004941 ENSG00000067596 DHX8 DDX8|HRH1|PRP22|PRPF22 DEAH-box helicase 8 protein-coding 17299 chr2 233492883 233493008 + 0 NA intron (NM_018218, intron 24 of 30) intron (NM_018218, intron 24 of 30) 72645 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 18399 chr20 63545269 63545373 + 0 NA intron (NM_080823, intron 1 of 7) intron (NM_080823, intron 1 of 7) 2183 NM_080823 6725 NM_080823 ENSG00000125508 SRMS C20orf148|PTK70|SRM|dJ697K14.1 src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites protein-coding 6027 chr11 108222902 108223032 + 0 NA promoter-TSS (NM_001321307) promoter-TSS (NM_001321307) 135 NM_000051 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 2559 chr1 209389266 209389346 + 0 NA Intergenic Intergenic -39517 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene protein-coding 4796 chr11 9460743 9460903 + 0 NA promoter-TSS (NR_036539) promoter-TSS (NR_036539) -125 NR_036539 644656 Hs.597846 NR_036539 ENSG00000268403 LOC644656 - uncharacterized LOC644656 ncRNA 5890 chr11 94885317 94885367 + 0 NA Intergenic Intergenic 88270 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 20898 chr3 188673950 188674085 + 0 NA intron (NM_001167671, intron 6 of 10) intron (NM_001167671, intron 6 of 10) -14764 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 8070 chr13 31172150 31172254 + 0 NA Intergenic Intergenic -9814 NM_001286504 10808 Hs.743267 NM_006644 ENSG00000120694 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock protein family H (Hsp110) member 1 protein-coding 9905 chr15 39213537 39213687 + 0 NA Intergenic Intergenic -37057 NR_144507 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 16496 chr2 156436218 156436345 + 0 NA promoter-TSS (NM_000408) promoter-TSS (NM_000408) -107 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 17935 chr20 35699320 35699440 + 0 NA promoter-TSS (NM_080748) promoter-TSS (NM_080748) -15 NM_021100 9054 Hs.194692 NM_021100 ENSG00000244005 NFS1 HUSSY-08|IscS|NIFS NFS1, cysteine desulfurase protein-coding 1245 chr1 87335355 87335371 + 0 NA intron (NM_006769, intron 2 of 4) CpG 6895 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 27488 chr8 19757932 19758032 + 0 NA Intergenic Intergenic -59425 NM_018142 55174 Hs.512627 NM_018142 ENSG00000104613 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 7596 chr12 107092327 107092376 + 0 NA intron (NM_004075, intron 1 of 12) intron (NM_004075, intron 1 of 12) 1506 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 27503 chr8 22227767 22227939 + 0 NA intron (NM_014759, intron 2 of 4) intron (NM_014759, intron 2 of 4) 4485 NM_001099335 9796 Hs.334688 NM_014759 ENSG00000168490 PHYHIP DYRK1AP3|PAHX-AP|PAHXAP1 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding 16123 chr2 110678052 110678174 + 0 NA promoter-TSS (NM_004336) promoter-TSS (NM_004336) -6 NM_001278616 699 Hs.469649 NM_004336 ENSG00000169679 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 17121 chr2 219279201 219279309 + 0 NA promoter-TSS (NM_001039550) promoter-TSS (NM_001039550) -63 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 24982 chr6 107894926 107895010 + 0 NA intron (NM_007214, intron 14 of 20) MER58A|DNA|hAT-Charlie 63310 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 7273 chr12 75656759 75656892 + 0 NA Intergenic Intergenic -145187 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit processome component homolog protein-coding 6301 chr11 126318758 126318862 + 0 NA intron (NM_014026, intron 2 of 5) intron (NM_014026, intron 2 of 5) 15058 NM_014026 28960 Hs.504249 NM_014026 ENSG00000110063 DCPS ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015 decapping enzyme, scavenger protein-coding 29947 chr9 115036813 115036917 + 0 NA intron (NM_002160, intron 20 of 27) MER81|DNA|hAT-Blackjack 81392 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 1676 chr1 150293703 150293867 + 0 NA promoter-TSS (NM_018997) promoter-TSS (NM_018997) -57 NM_031901 54460 Hs.405880 NM_018997 ENSG00000266472 MRPS21 MDS016|MRP-S21|RPMS21 mitochondrial ribosomal protein S21 protein-coding 1388 chr1 98903369 98903473 + 0 NA intron (NM_001010861, intron 5 of 5) intron (NM_001010861, intron 5 of 5) -100855 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 11327 chr16 50266462 50266614 + 0 NA promoter-TSS (NM_001286057) promoter-TSS (NM_001286057) -2 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 17108 chr2 218711222 218711246 + 0 NA intron (NM_014640, intron 1 of 19) CpG 389 NM_014640 9654 Hs.471405 NM_014640 ENSG00000135912 TTLL4 - tubulin tyrosine ligase like 4 protein-coding 346 chr1 23404003 23404107 + 0 NA intron (NM_003196, intron 5 of 10) intron (NM_003196, intron 5 of 10) 20724 NM_003196 6920 Hs.446354 NM_003196 ENSG00000204219 TCEA3 TFIIS|TFIIS.H transcription elongation factor A3 protein-coding 10664 chr15 89380040 89380127 + 0 NA intron (NR_133001, intron 3 of 6) intron (NR_133001, intron 3 of 6) 2041 NR_015411 254559 Hs.136313 NR_015411 ENSG00000255571 MIR9-3HG LINC00925 MIR9-3 host gene ncRNA 20121 chr3 129230859 129230889 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -18736 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 29141 chr9 69412751 69412912 + 0 NA Intergenic Intergenic 83506 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 14876 chr19 58466891 58467075 + 0 NA promoter-TSS (NM_014347) promoter-TSS (NM_014347) -62 NM_014347 25799 Hs.515660 NM_014347 ENSG00000083812 ZNF324 ZF5128|ZNF324A zinc finger protein 324 protein-coding 31115 chrX 139933105 139933244 + 0 NA Intergenic CpG -8943 NR_030230 574508 NR_030230 ENSG00000207633 MIR505 MIRN505|hsa-mir-505|mir-505 microRNA 505 ncRNA 9684 chr14 101477094 101477223 + 0 NA Intergenic Intergenic 35082 NR_135240 100507277 Hs.123543 NR_135240 ENSG00000259082 LOC100507277 - uncharacterized LOC100507277 ncRNA 17830 chr20 30813823 30813965 + 0 NA Intergenic CpG -410432 NR_045115 140678 Hs.653099 NR_045115 MLLT10P1 MLLT10L|bA348I14.3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 pseudogene 1 pseudo 2202 chr1 183024024 183024136 + 0 NA exon (NM_002293, exon 1 of 28) exon (NM_002293, exon 1 of 28) 620 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 17243 chr2 229922583 229922630 + 0 NA promoter-TSS (NM_001284214) promoter-TSS (NM_001284214) 115 NM_174899 130888 Hs.140666 NM_174899 ENSG00000153832 FBXO36 Fbx36 F-box protein 36 protein-coding 31204 chrX 155612901 155613005 + 0 NA promoter-TSS (NM_001184797) promoter-TSS (NM_001184797) 8 NM_018196 55217 Hs.133321 NM_018196 ENSG00000185973 TMLHE AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130 trimethyllysine hydroxylase, epsilon protein-coding 23658 chr5 163509466 163509570 + 0 NA intron (NM_013283, intron 1 of 6) MER5A|DNA|hAT-Charlie 3990 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 7318 chr12 79691141 79691261 + 0 NA promoter-TSS (NM_002583) promoter-TSS (NM_002583) -191 NM_002583 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 895 chr1 54081729 54081833 + 0 NA intron (NM_153035, intron 3 of 4) intron (NM_153035, intron 3 of 4) 27702 NR_039942 100616315 NR_039942 ENSG00000116205 MIR4781 mir-4781 microRNA 4781 ncRNA 26605 chr7 93327115 93327219 + 0 NA intron (NM_017667, intron 21 of 27) MER3|DNA|hAT-Charlie 94827 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50, EARP/GARPII complex subunit protein-coding 25648 chr7 7177199 7177345 + 0 NA Intergenic Intergenic -5343 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 17058 chr2 214069388 214069537 + 0 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) 311395 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 5237 chr11 46826574 46826723 + 0 NA intron (NM_014756, intron 1 of 42) intron (NM_014756, intron 1 of 42) 19660 NM_014756 9793 Hs.201253 NM_014756 ENSG00000175216 CKAP5 CHTOG|MSPS|TOG|TOGp|ch-TOG cytoskeleton associated protein 5 protein-coding 20045 chr3 123750884 123750988 + 0 NA intron (NM_001321309, intron 4 of 32) intron (NM_001321309, intron 4 of 32) 61292 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 25137 chr6 128520527 128520656 + 0 NA promoter-TSS (NM_001291981).2 promoter-TSS (NM_001291981).2 83 NM_001291983 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type K protein-coding 19186 chr3 13880669 13880773 + 0 NA promoter-TSS (NM_004625) promoter-TSS (NM_004625) -600 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A - Wnt family member 7A protein-coding 2762 chr1 221887239 221887368 + 0 NA Intergenic Intergenic -46637 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 22148 chr5 1516257 1516327 + 0 NA intron (NM_024830, intron 1 of 13) intron (NM_024830, intron 1 of 13) -5436 NR_106723 102466103 NR_106723 ENSG00000273742 MIR6075 hsa-mir-6075 microRNA 6075 ncRNA 19154 chr3 10804213 10804317 + 0 NA Intergenic MLT1F|LTR|ERVL-MaLR -11935 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 23633 chr5 159905604 159905758 + 0 NA Intergenic L2c|LINE|L2 -11052 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 23609 chr5 157994393 157994497 + 0 NA Intergenic L2b|LINE|L2 -135270 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 3608 chr10 42952443 42952547 + 0 NA Intergenic Intergenic 29012 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 28024 chr8 73420002 73420009 + 0 NA promoter-TSS (NR_038406) promoter-TSS (NR_038406) -69 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 16835 chr2 191014177 191014222 + 0 NA promoter-TSS (NM_007315) promoter-TSS (NM_007315) 51 NM_007315 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 7558 chr12 104064419 104064580 + 0 NA promoter-TSS (NM_001316967) promoter-TSS (NM_001316967) 41 NM_013320 29915 Hs.506558 NM_013320 ENSG00000111727 HCFC2 HCF-2|HCF2 host cell factor C2 protein-coding 24432 chr6 34609776 34609898 + 0 NA intron (NM_022758, intron 2 of 3) intron (NM_022758, intron 2 of 3) -53504 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 30628 chrX 40912823 40912927 + 0 NA Intergenic LTR33|LTR|ERVL -79679 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 28590 chr8 125110944 125111046 + 0 NA intron (NM_173685, intron 3 of 7) intron (NM_173685, intron 3 of 7) 19154 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase protein-coding 13725 chr18 63969975 63970126 + 0 NA promoter-TSS (NM_001031848) promoter-TSS (NM_001031848) 21 NM_198833 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 CAP2|PI8|PSS5 serpin family B member 8 protein-coding 15111 chr2 18048003 18048115 + 0 NA Intergenic MIRb|SINE|MIR 169402 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 18195 chr20 50731207 50731283 + 0 NA promoter-TSS (NM_032521) promoter-TSS (NM_032521) -299 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 16330 chr2 131492911 131492925 + 0 NA promoter-TSS (NM_001085365) promoter-TSS (NM_001085365) 105 NR_026922 150776 Hs.535622 NR_026922 ENSG00000152117 LOC150776 - sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene pseudo 24212 chr6 26033627 26033772 + 0 NA promoter-TSS (NM_003513) promoter-TSS (NM_003513) -131 NM_003513 8335 Hs.248174 NM_003513 ENSG00000278463 HIST1H2AB H2A/m|H2AFM histone cluster 1 H2A family member b protein-coding 25834 chr7 22357793 22357889 + 0 NA promoter-TSS (NM_012294) promoter-TSS (NM_012294) -927 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 16473 chr2 152200739 152200844 + 0 NA Intergenic LTR16A1|LTR|ERVL -24799 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 22299 chr5 17679866 17679970 + 0 NA Intergenic Charlie3|DNA|hAT-Charlie -127356 NR_134286 646241 Hs.407197 NR_134286 LOC646241 - uncharacterized LOC646241 ncRNA 1982 chr1 165144896 165145000 + 0 NA Intergenic Intergenic 211293 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 30318 chr9 133348107 133348247 + 0 NA promoter-TSS (NM_000972) promoter-TSS (NM_000972) -21 NM_133640 6837 Hs.78354 NM_006752 ENSG00000148297 MED22 MED24|SURF5|surf-5 mediator complex subunit 22 protein-coding 23984 chr6 7910893 7910997 + 0 NA promoter-TSS (NM_030810) promoter-TSS (NM_030810) -131 NM_030810 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 6539 chr12 6873421 6873519 + 0 NA promoter-TSS (NM_001146316) promoter-TSS (NM_001146316) -113 NM_032641 84727 Hs.479856 NM_032641 ENSG00000111671 SPSB2 GRCC9|SSB2 splA/ryanodine receptor domain and SOCS box containing 2 protein-coding 5980 chr11 102996420 102996510 + 0 NA Intergenic Intergenic -40731 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 26044 chr7 35695087 35695231 + 0 NA promoter-TSS (NR_136255) promoter-TSS (NR_136255) 3 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 12871 chr17 65855392 65855496 + 0 NA intron (NM_001199165, intron 20 of 26) L1MEh|LINE|L1 -28901 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 21090 chr3 197949816 197949947 + 0 NA promoter-TSS (NM_001323030) promoter-TSS (NM_001323030) 44 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 4127 chr10 95720881 95721018 + 0 NA intron (NM_001098175, intron 1 of 9) HERV17-int|LTR|ERV1 9170 NM_001098175 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 15514 chr2 47783014 47783069 + 0 NA promoter-TSS (NM_001281494) promoter-TSS (NM_001281494) -41 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 29322 chr9 78520025 78520062 + 0 NA Intergenic L1M2|LINE|L1 222968 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 24518 chr6 39280555 39280633 + 0 NA Intergenic Intergenic 33866 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 12358 chr17 35089190 35089294 + 0 NA promoter-TSS (NR_037713) promoter-TSS (NR_037713) 87 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 24540 chr6 41787548 41787657 + 0 NA TTS (NM_013397) TTS (NM_013397) 159 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 6569 chr12 8658515 8658619 + 0 NA intron (NM_001297710, intron 2 of 7) intron (NM_001297710, intron 2 of 7) 4321 NM_001297709 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibrillar associated protein 5 protein-coding 7139 chr12 56468433 56468562 + 0 NA promoter-TSS (NM_207344) promoter-TSS (NM_207344) -20 NM_207344 283377 Hs.128676 NM_207344 ENSG00000176422 SPRYD4 - SPRY domain containing 4 protein-coding 17347 chr2 237512895 237512999 + 0 NA intron (NM_001281474, intron 5 of 13) intron (NM_001281474, intron 5 of 13) 2016 NR_106869 102465486 NR_106869 ENSG00000277842 MIR6811 hsa-mir-6811 microRNA 6811 ncRNA 498 chr1 29236425 29236529 + 0 NA promoter-TSS (NM_001195001) promoter-TSS (NM_001195001) -39 NM_005704 10076 Hs.19718 NM_005704 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase, receptor type U protein-coding 16244 chr2 121634705 121634809 + 0 NA intron (NM_001142274, intron 1 of 37) intron (NM_001142274, intron 1 of 37) 14719 NM_015282 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 8012 chr13 27171995 27172023 + 0 NA promoter-TSS (NM_182488) promoter-TSS (NM_182488) -113 NM_182488 219333 Hs.42400 NM_182488 ENSG00000152484 USP12 UBH1|USP12L1 ubiquitin specific peptidase 12 protein-coding 19749 chr3 99535473 99535577 + 0 NA Intergenic Intergenic -103071 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 12957 chr17 72727832 72727903 + 0 NA intron (NM_139177, intron 7 of 9) intron (NM_139177, intron 7 of 9) -87395 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 20471 chr3 156152005 156152109 + 0 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) 9095 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 16869 chr2 196511436 196511463 + 0 NA intron (NM_020760, intron 1 of 28) intron (NM_020760, intron 1 of 28) 81162 NM_020760 57520 Hs.654742 NM_020760 ENSG00000138411 HECW2 NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 4311 chr10 105017386 105017403 + 0 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -351178 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 9851 chr15 34224915 34224928 + 0 NA promoter-TSS (NM_001286420) promoter-TSS (NM_001286420) -76 NM_016454 51234 Hs.250905 NM_016454 ENSG00000128463 EMC4 PIG17|TMEM85 ER membrane protein complex subunit 4 protein-coding 2028 chr1 167936165 167936231 + 0 NA promoter-TSS (NM_001017977) promoter-TSS (NM_001017977) 3 NR_026550 25874 Hs.517768 NM_015415 ENSG00000143158 MPC2 BRP44 mitochondrial pyruvate carrier 2 protein-coding 15015 chr2 11554220 11554324 + 0 NA intron (NM_033090, intron 1 of 10) intron (NM_033090, intron 1 of 10) 11547 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulation by estrogen in breast cancer 1 protein-coding 26629 chr7 95549861 95549984 + 0 NA Intergenic Intergenic 46691 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 25425 chr6 159252998 159253102 + 0 NA intron (NM_032532, intron 17 of 22) intron (NM_032532, intron 17 of 22) -83043 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 15580 chr2 55857102 55857172 + 0 NA Intergenic L2b|LINE|L2 67026 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin like extracellular matrix protein 1 protein-coding 17815 chr20 25247997 25248038 + 0 NA promoter-TSS (NM_002862) promoter-TSS (NM_002862) -53 NM_002862 5834 Hs.368157 NM_002862 ENSG00000100994 PYGB GPBB glycogen phosphorylase B protein-coding 1606 chr1 119453206 119453310 + 0 NA Intergenic Intergenic 38138 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 6156 chr11 118316764 118316868 + 0 NA TTS (NM_000733) TTS (NM_000733) 12236 NM_000733 916 Hs.3003 NM_000733 ENSG00000198851 CD3E IMD18|T3E|TCRE CD3e molecule protein-coding 14401 chr19 37370951 37370994 + 0 NA promoter-TSS (NM_032453) promoter-TSS (NM_032453) -185 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 27743 chr8 42152781 42152936 + 0 NA promoter-TSS (NM_001134296) promoter-TSS (NM_001134296) -88 NM_001134296 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 mu 2 subunit protein-coding 25780 chr7 18901577 18901587 + 0 NA intron (NM_178425, intron 21 of 24) intron (NM_178425, intron 21 of 24) 216090 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 8160 chr13 41019335 41019439 + 0 NA promoter-TSS (NM_172373) promoter-TSS (NM_172373) -15 NM_172373 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 - E74 like ETS transcription factor 1 protein-coding 19380 chr3 39152794 39152898 + 0 NA intron (NM_001320560, intron 1 of 4) intron (NM_001320560, intron 1 of 4) 765 NM_033027 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 11616 chr16 73651731 73651835 + 0 NA Intergenic AluY|SINE|Alu 264978 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 9664 chr14 100059509 100059651 + 0 NA intron (NM_001330221, intron 1 of 13) intron (NM_001330221, intron 1 of 13) -5834 NM_016337 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 17343 chr2 237298853 237299005 + 0 NA Intergenic Intergenic 115278 NM_057167 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 1933 chr1 161202206 161202359 + 0 NA 5' UTR (NM_004550, exon 2 of 15) 5' UTR (NM_004550, exon 2 of 15) 135 NM_001166159 4720 Hs.173611 NM_004550 ENSG00000158864 NDUFS2 CI-49 NADH:ubiquinone oxidoreductase core subunit S2 protein-coding 790 chr1 44793734 44793838 + 0 NA Intergenic L2b|LINE|L2 -6032 NM_153274 266675 Hs.302513 NM_153274 ENSG00000142959 BEST4 VMD2L2 bestrophin 4 protein-coding 29146 chr9 69861108 69861212 + 0 NA intron (NM_001308084, intron 4 of 4) Tigger3b|DNA|TcMar-Tigger 40355 NM_001308084 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 23278 chr5 136053834 136053844 + 0 NA intron (NM_000358, intron 8 of 16) intron (NM_000358, intron 8 of 16) 24944 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 19369 chr3 38834319 38834344 + 0 NA Intergenic Intergenic -40321 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 10240 chr15 62209936 62210092 + 0 NA Intergenic MER9B|LTR|ERVK 38781 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - golgin A2 pseudogene 11 pseudo 23138 chr5 126368504 126368663 + 0 NA intron (NM_001146319, intron 1 of 13) intron (NM_001146319, intron 1 of 13) 8487 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 3551 chr10 33010201 33010254 + 0 NA Intergenic Intergenic -51862 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 30646 chrX 44675450 44675659 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -132579 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 5474 chr11 65382155 65382297 + 0 NA 5' UTR (NM_001278250, exon 1 of 5) 5' UTR (NM_001278250, exon 1 of 5) 160 NM_001300820 283130 Hs.661604 NM_182556 ENSG00000162241 SLC25A45 - solute carrier family 25 member 45 protein-coding 20748 chr3 180063946 180064050 + 0 NA Intergenic L2c|LINE|L2 -26945 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 11539 chr16 68732209 68732313 + 0 NA Intergenic Intergenic -5029 NM_001317186 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 414 chr1 26306649 26306775 + 0 NA promoter-TSS (NM_001077262) promoter-TSS (NM_001077262) -8 NM_001077262 91544 Hs.145061 NM_145345 ENSG00000158062 UBXN11 COA-1|PP2243|SOC|SOCI|UBXD5 UBX domain protein 11 protein-coding 11800 chr16 86555175 86555308 + 0 NA promoter-TSS (NM_001159380) promoter-TSS (NM_001159380) -6 NR_027490 64779 Hs.343627 NM_022764 ENSG00000103248 MTHFSD - methenyltetrahydrofolate synthetase domain containing protein-coding 14979 chr2 9843557 9843611 + 0 NA intron (NM_005680, intron 1 of 14) CpG 142 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 27588 chr8 26641017 26641121 + 0 NA intron (NM_001386, intron 8 of 13) intron (NM_001386, intron 8 of 13) 62664 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 17444 chr20 1490166 1490285 + 0 NA intron (NM_001134836, intron 1 of 4) MIRb|SINE|MIR 1362 NM_001134836 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 11224 chr16 30527407 30527473 + 0 NA promoter-TSS (NM_024671) promoter-TSS (NM_024671) -851 NM_024671 79724 Hs.85658 NM_024671 ENSG00000169957 ZNF768 - zinc finger protein 768 protein-coding 23706 chr5 170750192 170750296 + 0 NA Intergenic MIRb|SINE|MIR -33475 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 21989 chr4 168318737 168318809 + 0 NA promoter-TSS (NM_017631) promoter-TSS (NM_017631) 34 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 22240 chr5 13985796 13985900 + 0 NA Intergenic Intergenic -41368 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 7832 chr12 123458230 123458334 + 0 NA intron (NR_104103, intron 1 of 1) CpG 178 NM_022717 11066 Hs.632738 NM_007020 ENSG00000184209 SNRNP35 HM-1|U1SNRNPBP small nuclear ribonucleoprotein U11/U12 subunit 35 protein-coding 19157 chr3 11096637 11096701 + 0 NA Intergenic Intergenic -40424 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 15884 chr2 84894250 84894404 + 0 NA Intergenic LTR16A|LTR|ERVL -11312 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 28044 chr8 74338304 74338408 + 0 NA Intergenic Intergenic -12027 NM_018972 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 20469 chr3 155870497 155870651 + 0 NA promoter-TSS (NM_003875) promoter-TSS (NM_003875) 38 NM_003875 8833 Hs.591314 NM_003875 ENSG00000163655 GMPS - guanine monophosphate synthase protein-coding 18946 chr22 41001756 41001980 + 0 NA Intergenic Intergenic 50521 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 8021 chr13 27573519 27573623 + 0 NA intron (NM_153371, intron 2 of 9) intron (NM_153371, intron 2 of 9) 47012 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 21638 chr4 102429659 102429837 + 0 NA intron (NR_136202, intron 2 of 4) L2|LINE|L2 -71581 NM_003998 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 6656 chr12 13727872 13727976 + 0 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 252164 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 7400 chr12 89769349 89769363 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 60401 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 ATP2B1-AS1 LINC00936 ATP2B1 antisense RNA 1 ncRNA 5932 chr11 96487452 96487593 + 0 NA intron (NR_047481, intron 1 of 4) L1PA6|LINE|L1 19355 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 28305 chr8 100567477 100567586 + 0 NA Intergenic Intergenic -7745 NM_001270377 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 15887 chr2 84925957 84926110 + 0 NA Intergenic MER91C|DNA|hAT-Tip100 20394 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 18948 chr22 41280180 41280249 + 0 NA intron (NM_001278651, intron 3 of 16) intron (NM_001278651, intron 3 of 16) 5803 NM_001278651 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 3673 chr10 50470936 50471153 + 0 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 152933 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 5665 chr11 74493201 74493355 + 0 NA promoter-TSS (NM_001319240) promoter-TSS (NM_001319240) -107 NM_001319240 100287896 Hs.591971 NM_198519 LOC100287896 - uncharacterized LOC100287896 protein-coding 14031 chr19 8321360 8321512 + 0 NA promoter-TSS (NR_135539) promoter-TSS (NR_135539) -23 NM_005001 4701 Hs.333427 NM_005001 ENSG00000167774 NDUFA7 B14.5a|CI-B14.5a NADH:ubiquinone oxidoreductase subunit A7 protein-coding 19872 chr3 111761628 111761797 + 0 NA intron (NM_001134437, intron 1 of 17) MER5A|DNA|hAT-Charlie 29232 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 19299 chr3 30538913 30539056 + 0 NA Intergenic L4_A_Mam|LINE|RTE-X -67518 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 7604 chr12 107349188 107349292 + 0 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) 28652 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 26776 chr7 105809307 105809411 + 0 NA intron (NM_152749, intron 2 of 3) L1MB1|LINE|L1 67226 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 21984 chr4 165580719 165580798 + 0 NA Intergenic Intergenic -103881 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 8662 chr14 20401230 20401334 + 0 NA intron (NM_001319035, intron 6 of 52) intron (NM_001319035, intron 6 of 52) 12138 NM_007110 7011 Hs.508835 NM_007110 ENSG00000129566 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase associated protein 1 protein-coding 15792 chr2 72757375 72757479 + 0 NA intron (NR_135774, intron 1 of 19) MER65D|LTR|ERV1 68615 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2 exocyst complex component 6B protein-coding 4581 chr10 125901006 125901110 + 0 NA intron (NM_145235, intron 1 of 10) FLAM_C|SINE|Alu 4519 NM_145235 92565 Hs.352591 NM_145235 ENSG00000203780 FANK1 HSD13 fibronectin type III and ankyrin repeat domains 1 protein-coding 13212 chr18 2592757 2592897 + 0 NA intron (NM_006101, intron 10 of 16) intron (NM_006101, intron 10 of 16) 21316 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80, kinetochore complex component protein-coding 30272 chr9 131373407 131373557 + 0 NA Intergenic CpG -56608 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 17912 chr20 34899958 34900030 + 0 NA intron (NM_018677, intron 2 of 17) L1MB8|LINE|L1 23469 NM_001076552 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short-chain family member 2 protein-coding 293 chr1 19925503 19925540 + 0 NA Intergenic Intergenic -1904 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 9476 chr14 81400934 81401060 + 0 NA intron (NM_001256430, intron 2 of 7) intron (NM_001256430, intron 2 of 7) 26215 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 1272 chr1 89524684 89524788 + 0 NA promoter-TSS (NM_001134476) promoter-TSS (NM_001134476) -102 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 family member B protein-coding 26755 chr7 103406949 103407053 + 0 NA intron (NR_135801, intron 8 of 17) MER119|DNA|hAT-Charlie 36210 NR_120443 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 23324 chr5 139513615 139513769 + 0 NA Intergenic Intergenic -30902 NM_198282 340061 Hs.379754 NM_198282 ENSG00000184584 TMEM173 ERIS|MITA|MPYS|NET23|SAVI|STING|hMITA|hSTING transmembrane protein 173 protein-coding 13426 chr18 34738696 34738800 + 0 NA intron (NM_001198941, intron 1 of 14) intron (NM_001198941, intron 1 of 14) -17228 NM_001390 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 11252 chr16 30950307 30950333 + 0 NA intron (NM_152288, intron 1 of 1) intron (NM_152288, intron 1 of 1) 1236 NM_152288 93129 Hs.745104 NM_152288 ENSG00000175938 ORAI3 TMEM142C ORAI calcium release-activated calcium modulator 3 protein-coding 469 chr1 28088560 28088747 + 0 NA promoter-TSS (NM_001282560) promoter-TSS (NM_001282560) -16 NM_001282560 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 10232 chr15 61749340 61749420 + 0 NA Intergenic Intergenic 311085 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 6350 chr11 129854395 129854499 + 0 NA intron (NM_138788, intron 2 of 5) intron (NM_138788, intron 2 of 5) 38562 NM_006165 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 9983 chr15 43123192 43123304 + 0 NA Intergenic Intergenic -9867 NM_001347024 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 15464 chr2 45119909 45120013 + 0 NA Intergenic Intergenic -110558 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 16202 chr2 118865249 118865353 + 0 NA Intergenic Intergenic -17118 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 1566 chr1 115714743 115714795 + 0 NA intron (NM_001232, intron 8 of 10) intron (NM_001232, intron 8 of 10) 54036 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 10788 chr15 98178064 98178158 + 0 NA Intergenic Intergenic -89358 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 12049 chr17 7588820 7588864 + 0 NA TTS (NM_004870) TTS (NM_004870) 1328 NM_006942 6665 Hs.95582 NM_006942 ENSG00000129194 SOX15 SOX20|SOX26|SOX27 SRY-box 15 protein-coding 25851 chr7 23181922 23182012 + 0 NA 5' UTR (NM_007342, exon 1 of 7) 5' UTR (NM_007342, exon 1 of 7) 140 NM_007342 11097 Hs.408241 NM_007342 ENSG00000136243 NUPL2 CG1|NLP-1|NLP_1|hCG1 nucleoporin like 2 protein-coding 29389 chr9 83708241 83708345 + 0 NA promoter-TSS (NM_013438) promoter-TSS (NM_013438) -38 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 40 chr1 2391596 2391754 + 0 NA promoter-TSS (NR_125361) promoter-TSS (NR_125361) 76 NR_125361 79906 Hs.642701 NM_024848 ENSG00000116151 MORN1 - MORN repeat containing 1 protein-coding 14836 chr19 57240535 57240665 + 0 NA promoter-TSS (NM_001023563) promoter-TSS (NM_001023563) -85 NM_001023563 390980 Hs.22488 NM_001023563 ENSG00000204524 ZNF805 - zinc finger protein 805 protein-coding 25624 chr7 6374305 6374318 + 0 NA promoter-TSS (NM_018890) promoter-TSS (NM_018890) -184 NM_006908 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|Rac-1|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding 22324 chr5 26482914 26483055 + 0 NA Intergenic LTR35A|LTR|ERV1 555598 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 10209 chr15 59657511 59657641 + 0 NA promoter-TSS (NM_001320929) promoter-TSS (NM_001320929) -35 NM_001320930 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 27416 chr8 12945557 12945669 + 0 NA promoter-TSS (NM_020844) promoter-TSS (NM_020844) -61 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 KIAA1456 C8orf79|TRM9L KIAA1456 protein-coding 19838 chr3 108863532 108863636 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 40886 NM_001317747 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 9011 chr14 52707039 52707182 + 0 NA promoter-TSS (NM_002806) promoter-TSS (NM_002806) -68 NM_002806 5706 Hs.156171 NM_002806 ENSG00000100519 PSMC6 CADP44|HEL-S-73|P44|SUG2|p42 proteasome 26S subunit, ATPase 6 protein-coding 12054 chr17 7835508 7835633 + 0 NA Intergenic CpG -4347 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 1115 chr1 70510127 70510295 + 0 NA Intergenic Intergenic 98993 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 10728 chr15 92882420 92882563 + 0 NA promoter-TSS (NR_037600) promoter-TSS (NR_037600) -352 NR_037600 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 21889 chr4 147831886 147831990 + 0 NA intron (NM_024605, intron 3 of 22) intron (NM_024605, intron 3 of 22) 49343 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 21880 chr4 147370560 147370664 + 0 NA Intergenic Intergenic -25895 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 16428 chr2 146135316 146135455 + 0 NA Intergenic FLAM_C|SINE|Alu -451672 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 5626 chr11 72112735 72112885 + 0 NA promoter-TSS (NM_001278494) promoter-TSS (NM_001278494) -30 NM_001330321 25906 Hs.38044 NM_014042 ENSG00000110200 ANAPC15 APC15|C11orf51|HSPC020 anaphase promoting complex subunit 15 protein-coding 18470 chr21 31559184 31559235 + 0 NA promoter-TSS (NM_003253) promoter-TSS (NM_003253) -36 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 4406 chr10 114625207 114625311 + 0 NA intron (NM_001322885, intron 1 of 20) L3b|LINE|CR1 33040 NM_002313 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 3529 chr10 31760320 31760418 + 0 NA Intergenic CpG 148557 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 20829 chr3 184726542 184726716 + 0 NA Intergenic LTR104_Mam|LTR|Gypsy -14581 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 - MAGE family member F1 protein-coding 4303 chr10 104305674 104305816 + 0 NA Intergenic Intergenic -17619 NR_120622 101927472 Hs.670333 NR_120622 LOC101927472 - uncharacterized LOC101927472 ncRNA 2293 chr1 196276203 196276307 + 0 NA intron (NM_001287820, intron 23 of 26) HAL1|LINE|L1 306226 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 267 chr1 18480966 18481119 + 0 NA exon (NM_152375, exon 1 of 1) exon (NM_152375, exon 1 of 1) 112 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 543 chr1 32133542 32133673 + 0 NA intron (NM_012316, intron 1 of 13) AluJo|SINE|Alu 25564 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 20302 chr3 141940407 141940569 + 0 NA Intergenic Intergenic 59899 NM_001178140 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 1892 chr1 159580538 159580642 + 0 NA Intergenic Intergenic -7236 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 25517 chr7 391496 391533 + 0 NA Intergenic Intergenic 12089 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 23585 chr5 154858436 154858604 + 0 NA promoter-TSS (NM_001301075) promoter-TSS (NM_001301075) 1 NM_001301073 9337 Hs.26703 NM_004779 ENSG00000155508 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex subunit 8 protein-coding 22014 chr4 172982224 172982425 + 0 NA intron (NM_001034845, intron 10 of 12) intron (NM_001034845, intron 10 of 12) -186429 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 17741 chr20 20549822 20549975 + 0 NA intron (NM_020343, intron 23 of 39) intron (NM_020343, intron 23 of 39) 162725 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 2813 chr1 224454455 224454557 + 0 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 19611 NM_001322303 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 9800 chr15 29522750 29522854 + 0 NA intron (NM_015307, intron 1 of 10) L1MB7|LINE|L1 47921 NM_015307 23359 Hs.383564 NM_015307 ENSG00000104059 FAM189A1 TMEM228 family with sequence similarity 189 member A1 protein-coding 20355 chr3 148903304 148903343 + 0 NA Intergenic Intergenic 38067 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 12975 chr17 74552323 74552361 + 0 NA Intergenic Intergenic -6171 NM_006678 10871 Hs.2605 NM_006678 ENSG00000167850 CD300C CLM-6|CMRF-35|CMRF-35A|CMRF35|CMRF35-A1|CMRF35A|CMRF35A1|IGSF16|LIR CD300c molecule protein-coding 28424 chr8 109597851 109597955 + 0 NA intron (NM_001099744, intron 4 of 7) intron (NM_001099744, intron 4 of 7) 10159 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 2724 chr1 219699970 219700031 + 0 NA Intergenic Intergenic -142676 NR_135822 102723886 Hs.525963 NR_135822 LOC102723886 - uncharacterized LOC102723886 ncRNA 27597 chr8 27362028 27362245 + 0 NA intron (NM_173175, intron 1 of 29) intron (NM_173175, intron 1 of 29) 36572 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 23778 chr5 176543510 176543614 + 0 NA intron (NM_001171976, intron 1 of 31) CpG 1051 NM_001171976 54825 Hs.4205 NM_017675 ENSG00000074276 CDHR2 PCDH24|PCLKC cadherin related family member 2 protein-coding 21222 chr4 20251900 20251906 + 0 NA promoter-TSS (NM_004787) promoter-TSS (NM_004787) -2 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 757 chr1 43349240 43349336 + 0 NA exon (NM_005373, exon 10 of 12) exon (NM_005373, exon 10 of 12) -9667 NM_001255 991 Hs.524947 NM_001255 ENSG00000117399 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding 15992 chr2 97996013 97996095 + 0 NA promoter-TSS (NM_015348) promoter-TSS (NM_015348) -163 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 2577 chr1 209816517 209816662 + 0 NA Intergenic Intergenic -10414 NM_006147 3664 Hs.591415 NM_006147 ENSG00000117595 IRF6 LPS|OFC6|PIT|PPS|PPS1|VWS|VWS1 interferon regulatory factor 6 protein-coding 27264 chr7 155298990 155299123 + 0 NA intron (NM_198337, intron 2 of 3) intron (NM_198337, intron 2 of 3) 1284 NM_001346594 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 9296 chr14 69658831 69658935 + 0 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) 47290 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 12834 chr17 63676048 63676191 + 0 NA intron (NM_001330431, intron 6 of 15) intron (NM_001330431, intron 6 of 15) 24040 NM_030576 80774 Hs.591166 NM_030576 ENSG00000136490 LIMD2 - LIM domain containing 2 protein-coding 21517 chr4 83013091 83013166 + 0 NA promoter-TSS (NM_001115007) promoter-TSS (NM_001115007) -187 NM_001115007 132660 Hs.96952 NM_194282 ENSG00000189308 LIN54 CXCDC1|JC8.6|MIP120|TCX1 lin-54 DREAM MuvB core complex component protein-coding 7379 chr12 88325161 88325265 + 0 NA Intergenic Intergenic 182917 NM_181783 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane and tetratricopeptide repeat containing 3 protein-coding 3359 chr10 17616786 17616890 + 0 NA intron (NM_014241, intron 1 of 6) CpG 536 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 13771 chr18 73895721 73895860 + 0 NA Intergenic Intergenic 251974 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 18578 chr21 43718959 43719029 + 0 NA promoter-TSS (NM_003681) promoter-TSS (NM_003681) -103 NM_003681 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 28095 chr8 81050789 81050893 + 0 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 61227 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 6417 chr11 134640021 134640169 + 0 NA Intergenic Intergenic 203613 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 15487 chr2 46542483 46542561 + 0 NA promoter-TSS (NM_001318063) promoter-TSS (NM_001318063) 35 NM_001318063 90423 Hs.659656 NM_080653 ENSG00000250565 ATP6V1E2 ATP6E1|ATP6EL2|ATP6V1EL2|VMA4 ATPase H+ transporting V1 subunit E2 protein-coding 30286 chr9 131755675 131755779 + 0 NA Intergenic Intergenic -15783 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 21646 chr4 103019592 103019697 + 0 NA promoter-TSS (NM_001100874) promoter-TSS (NM_001100874) 95 NM_001100874 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 9424 chr14 77088433 77088537 + 0 NA Intergenic Intergenic -9750 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 13305 chr18 22391702 22391910 + 0 NA Intergenic Intergenic 26109 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 30055 chr9 122180754 122180858 + 0 NA intron (NM_198469, intron 4 of 4) L2b|LINE|L2 20898 NM_198469 254956 Hs.71428 NM_198469 ENSG00000185681 MORN5 C9orf113|C9orf18 MORN repeat containing 5 protein-coding 28188 chr8 92965023 92965057 + 0 NA intron (NM_001171797, intron 1 of 4) intron (NM_001171797, intron 1 of 4) 549 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 23666 chr5 167759581 167759717 + 0 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 4713 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 22348 chr5 33440765 33440869 + 0 NA promoter-TSS (NM_152295) promoter-TSS (NM_152295) 41 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 28628 chr8 127215090 127215220 + 0 NA intron (NR_108049, intron 1 of 1) intron (NR_108049, intron 1 of 1) 4113 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 (non-protein coding) ncRNA 28288 chr8 100157855 100157958 + 0 NA promoter-TSS (NM_172218) promoter-TSS (NM_172218) -129 NM_172218 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 23077 chr5 118988518 118988672 + 0 NA promoter-TSS (NM_001308081) promoter-TSS (NM_001308081) 10 NM_173666 285605 Hs.655891 NM_173666 ENSG00000169570 DTWD2 - DTW domain containing 2 protein-coding 5423 chr11 64153187 64153334 + 0 NA intron (NM_014067, intron 1 of 10) intron (NM_014067, intron 1 of 10) 12853 NM_014067 28992 Hs.602898 NM_014067 ENSG00000133315 MACROD1 LRP16 MACRO domain containing 1 protein-coding 22249 chr5 14268390 14268497 + 0 NA intron (NR_134469, intron 1 of 56) intron (NR_134469, intron 1 of 56) 124741 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 17693 chr20 18144502 18144606 + 0 NA promoter-TSS (NR_028402) promoter-TSS (NR_028402) -545 NR_028402 57325 Hs.488051 NM_020536 ENSG00000149474 KAT14 ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1 lysine acetyltransferase 14 protein-coding 25293 chr6 147202445 147202604 + 0 NA intron (NR_034115, intron 1 of 10) intron (NR_034115, intron 1 of 10) -1834 NM_001127715 134957 Hs.86320 NM_139244 ENSG00000164506 STXBP5 LGL3|LLGL3|Nbla04300 syntaxin binding protein 5 protein-coding 22177 chr5 5598661 5598831 + 0 NA Intergenic LTR16A1|LTR|ERVL 176073 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 3102 chr1 243944617 243944721 + 0 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 27267 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LOC339529 - uncharacterized LOC339529 ncRNA 29413 chr9 84976036 84976140 + 0 NA intron (NM_001018064, intron 15 of 16) intron (NM_001018064, intron 15 of 16) 305711 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 28883 chr9 3760192 3760296 + 0 NA Intergenic Intergenic 92158 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 7401 chr12 89825786 89825890 + 0 NA Intergenic L1M6|LINE|L1 116883 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 ATP2B1-AS1 LINC00936 ATP2B1 antisense RNA 1 ncRNA 27114 chr7 140398450 140398579 + 0 NA promoter-TSS (NM_001287498) promoter-TSS (NM_001287498) 36 NM_001287498 84255 Hs.446021 NM_032295 ENSG00000157800 SLC37A3 - solute carrier family 37 member 3 protein-coding 21242 chr4 22515309 22515468 + 0 NA intron (NM_145290, intron 1 of 18) CpG 666 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 18062 chr20 44311128 44311277 + 0 NA promoter-TSS (NM_001080472) promoter-TSS (NM_001080472) 50 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 4057 chr10 90418982 90419086 + 0 NA intron (NR_110657, intron 3 of 6) Tigger3b|DNA|TcMar-Tigger 121771 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LOC101926942 - uncharacterized LOC101926942 ncRNA 5891 chr11 94973508 94973660 + 0 NA promoter-TSS (NM_016403) promoter-TSS (NM_016403) 28 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 3620 chr10 43436755 43436859 + 0 NA promoter-TSS (NR_026693) promoter-TSS (NR_026693) -319 NR_026693 642819 Hs.719657 NR_026693 ZNF487 KRBO1|ZNF487P zinc finger protein 487 pseudo 14574 chr19 45681543 45681741 + 0 NA exon (NM_001308418, exon 12 of 13) exon (NM_001308418, exon 12 of 13) -6634 NR_037512 100500845 NR_037512 ENSG00000283212 MIR642B mir-642b microRNA 642b ncRNA 233 chr1 16499245 16499374 + 0 NA Intergenic CpG -6608 NR_023386 114819 Hs.597881 NR_023386 ENSG00000080947 CROCCP3 CROCCL2|dJ798A10.2 ciliary rootlet coiled-coil, rootletin pseudogene 3 pseudo 22792 chr5 80781519 80781623 + 0 NA intron (NM_002439, intron 17 of 23) AluJb|SINE|Alu -126590 NR_110936 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 6981 chr12 49843030 49843194 + 0 NA promoter-TSS (NM_181708) promoter-TSS (NM_181708) 17 NM_181708 144233 Hs.142736 NM_181708 ENSG00000186666 BCDIN3D - BCDIN3 domain containing RNA methyltransferase protein-coding 1490 chr1 110235960 110236046 + 0 NA Intergenic MIRb|SINE|MIR 25289 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 21982 chr4 165476731 165476835 + 0 NA intron (NM_001873, intron 3 of 8) intron (NM_001873, intron 3 of 8) 90541 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 20662 chr3 172516915 172517042 + 0 NA TTS (NM_001190943) TTS (NM_001190943) 6497 NM_001190943 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 2198 chr1 182839694 182839798 + 0 NA intron (NM_001357, intron 1 of 27) CpG 442 NR_033302 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding 2947 chr1 231828282 231828386 + 0 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -9817 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 (non-protein coding) ncRNA 25779 chr7 18895518 18895646 + 0 NA intron (NM_178425, intron 21 of 24) intron (NM_178425, intron 21 of 24) 222090 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 4480 chr10 119654719 119654823 + 0 NA intron (NM_004281, intron 1 of 3) intron (NM_004281, intron 1 of 3) 3401 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 26165 chr7 44163692 44163796 + 0 NA intron (NM_000162, intron 1 of 9) L1ME1|LINE|L1 -4456 NM_033508 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 17933 chr20 35616362 35616504 + 0 NA intron (NM_003116, intron 1 of 11) intron (NM_003116, intron 1 of 11) 549 NM_001317931 6676 Hs.123159 NM_003116 ENSG00000061656 SPAG4 CT127|SUN4 sperm associated antigen 4 protein-coding 4105 chr10 94545608 94545741 + 0 NA promoter-TSS (NM_001289068) promoter-TSS (NM_001289068) -93 NM_001289074 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid-specific protein-coding 27213 chr7 149771828 149771932 + 0 NA intron (NM_207336, intron 1 of 4) CpG 1599 NM_001329856 168544 Hs.726477 NM_207336 ENSG00000181444 ZNF467 EZI|Zfp467 zinc finger protein 467 protein-coding 11338 chr16 51553403 51553583 + 0 NA Intergenic Intergenic -209026 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 20822 chr3 184513865 184514005 + 0 NA Intergenic CpG 42983 NR_046593 100874079 Hs.574899 NR_046593 ENSG00000230215 LINC01840 EIF2B5-AS1 long intergenic non-protein coding RNA 1840 ncRNA 5120 chr11 33700947 33701092 + 0 NA promoter-TSS (NM_001166692) promoter-TSS (NM_001166692) -279 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 4841 chr11 12110369 12110524 + 0 NA promoter-TSS (NM_001282668) promoter-TSS (NM_001282668) -130 NM_001346299 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 13147 chr17 81927722 81927803 + 0 NA promoter-TSS (NM_002359) promoter-TSS (NM_002359) -51 NM_002359 4097 Hs.252229 NM_002359 ENSG00000197063 MAFG hMAF MAF bZIP transcription factor G protein-coding 18516 chr21 36910124 36910174 + 0 NA intron (NM_000411, intron 6 of 11) intron (NM_000411, intron 6 of 11) 56507 NM_001242784 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 27736 chr8 41718081 41718146 + 0 NA exon (NM_000037, exon 11 of 43) exon (NM_000037, exon 11 of 43) -52827 NM_001142445 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 4288 chr10 103872247 103872370 + 0 NA Intergenic Intergenic -16902 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 23076 chr5 117568769 117568799 + 0 NA intron (NR_046089, intron 5 of 5) intron (NR_046089, intron 5 of 5) 153272 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 13604 chr18 54260798 54260902 + 0 NA Intergenic L2a|LINE|L2 -8629 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding 18245 chr20 53594123 53594227 + 0 NA Intergenic CpG -11078 NM_006526 7764 Hs.155040 NM_006526 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 2000 chr1 166167137 166167241 + 0 NA promoter-TSS (NM_001320302) promoter-TSS (NM_001320302) -434 NM_001017961 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 29006 chr9 27247899 27248003 + 0 NA intron (NR_026679, intron 15 of 16) intron (NR_026679, intron 15 of 16) 34842 NR_026679 158035 Hs.201554 NR_026679 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 2531 chr1 207869068 207869200 + 0 NA Intergenic CpG 42204 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 30610 chrX 37912425 37912602 + 0 NA Intergenic MamRep605|LTR?|LTR? -64877 NM_006520 6990 Hs.446392 NM_006520 ENSG00000165169 DYNLT3 RP3|TCTE1L|TCTEX1L dynein light chain Tctex-type 3 protein-coding 8199 chr13 44436777 44436948 + 0 NA promoter-TSS (NM_006022) promoter-TSS (NM_006022) 62 NM_006022 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 13039 chr17 76484870 76484974 + 0 NA intron (NM_024599, intron 2 of 18) MIR|SINE|MIR 2987 NM_001005498 79651 Hs.464157 NM_024599 ENSG00000129667 RHBDF2 RHBDL5|RHBDL6|TEC|TOC|TOCG|iRhom2 rhomboid 5 homolog 2 protein-coding 7211 chr12 63400810 63400956 + 0 NA Intergenic LTR18B|LTR|ERVL -248073 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 9317 chr14 70907485 70907497 + 0 NA promoter-TSS (NM_001308160) promoter-TSS (NM_001308160) 86 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex homolog 1 (Drosophila) protein-coding 8707 chr14 22829825 22829959 + 0 NA promoter-TSS (NM_178336) promoter-TSS (NM_178336) 9 NM_181305 122704 Hs.355935 NM_178336 ENSG00000172590 MRPL52 - mitochondrial ribosomal protein L52 protein-coding 12590 chr17 45440173 45440277 + 0 NA exon (NM_014798, exon 10 of 12) exon (NM_014798, exon 10 of 12) -7309 NM_174919 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 6557 chr12 7825841 7825995 + 0 NA intron (NM_001286237, intron 6 of 9) intron (NM_001286237, intron 6 of 9) 36522 NM_024865 79923 Hs.635882 NM_024865 ENSG00000111704 NANOG - Nanog homeobox protein-coding 14553 chr19 45424424 45424575 + 0 NA promoter-TSS (NM_001166049) promoter-TSS (NM_001166049) -580 NM_001166049 2067 Hs.435981 NM_001983 ENSG00000012061 ERCC1 COFS4|RAD10|UV20 ERCC excision repair 1, endonuclease non-catalytic subunit protein-coding 29715 chr9 101459116 101459236 + 0 NA Intergenic Intergenic -9263 NR_121576 101928470 Hs.656088 NR_121573 ENSG00000225376 TMEM246-AS1 - TMEM246 antisense RNA 1 ncRNA 24468 chr6 36617220 36617338 + 0 NA Intergenic Intergenic 5233 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 25042 chr6 116074177 116074281 + 0 NA Intergenic Intergenic -13471 NM_002031 2444 Hs.89426 NM_002031 ENSG00000111816 FRK GTK|PTK5|RAK fyn related Src family tyrosine kinase protein-coding 3143 chr1 246931883 246932019 + 0 NA promoter-TSS (NM_015446) promoter-TSS (NM_015446) 27 NR_136586 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 26057 chr7 36389632 36389649 + 0 NA promoter-TSS (NM_001284302) promoter-TSS (NM_001284302) -163 NM_018685 54443 Hs.62180 NM_018685 ENSG00000011426 ANLN FSGS8|Scraps|scra anillin actin binding protein protein-coding 5789 chr11 86172919 86173112 + 0 NA Intergenic Intergenic -71369 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 6334 chr11 129279494 129279611 + 0 NA Intergenic CpG -87354 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 25260 chr6 143450737 143450752 + 0 NA promoter-TSS (NM_182503) promoter-TSS (NM_182503) -37 NM_003630 8504 Hs.7277 NM_003630 ENSG00000034693 PEX3 PBD10A|TRG18 peroxisomal biogenesis factor 3 protein-coding 17051 chr2 213151868 213151965 + 0 NA promoter-TSS (NM_001079526) promoter-TSS (NM_001079526) -307 NM_001079526 22807 Hs.604950 NM_016260 ENSG00000030419 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 protein-coding 10680 chr15 90102488 90102592 + 0 NA promoter-TSS (NM_001290114) promoter-TSS (NM_001290114) 14 NM_001290114 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 26229 chr7 47763784 47763881 + 0 NA intron (NR_038407, intron 2 of 2) intron (NR_038407, intron 2 of 2) 2356 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 26805 chr7 108003195 108003299 + 0 NA 5' UTR (NM_002291, exon 1 of 34) 5' UTR (NM_002291, exon 1 of 34) 112 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 26921 chr7 121795826 121795952 + 0 NA Intergenic Intergenic -77216 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase, receptor type Z1 protein-coding 19309 chr3 31981724 31981875 + 0 NA promoter-TSS (NM_001174060) promoter-TSS (NM_001174060) 25 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 9532 chr14 89507627 89507733 + 0 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) -68536 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 22712 chr5 73370729 73370837 + 0 NA Intergenic Intergenic 77744 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 22479 chr5 43804178 43804280 + 0 NA Intergenic AluJo|SINE|Alu -200999 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 2122 chr1 177800790 177800868 + 0 NA Intergenic Intergenic 100305 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 31113 chrX 139738735 139738839 + 0 NA intron (NM_173694, intron 27 of 29) intron (NM_173694, intron 27 of 29) -30565 NM_001171876 4168 Hs.387262 NM_005369 ENSG00000101977 MCF2 ARHGEF21|DBL MCF.2 cell line derived transforming sequence protein-coding 16038 chr2 101387347 101387457 + 0 NA exon (NM_153836, exon 1 of 4) exon (NM_153836, exon 1 of 4) 101 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 15438 chr2 43169165 43169178 + 0 NA Intergenic Intergenic 57435 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 10100 chr15 51907580 51907684 + 0 NA intron (NM_014547, intron 9 of 9) MIRb|SINE|MIR 16488 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 28378 chr8 104326131 104326235 + 0 NA Intergenic Intergenic -13613 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 24892 chr6 87408289 87408434 + 0 NA intron (NM_001031743, intron 1 of 12) CpG 389 NM_001031743 154313 Hs.82921 NM_178823 ENSG00000213204 CFAP206 C6orf165|dJ382I10.1 cilia and flagella associated protein 206 protein-coding 30944 chrX 107775773 107775993 + 0 NA promoter-TSS (NM_198057) promoter-TSS (NM_198057) -96 NM_198057 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 7619 chr12 108734430 108734580 + 0 NA Intergenic MIRb|SINE|MIR -2955 NM_014325 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 8777 chr14 28653009 28653163 + 0 NA Intergenic L2b|LINE|L2 112233 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 13181 chr17 82781855 82782046 + 0 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 29886 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 15175 chr2 24084379 24084447 + 0 NA promoter-TSS (NM_001206802) promoter-TSS (NM_001206802) -82 NM_001206802 9540 Hs.50649 NM_004881 ENSG00000115129 TP53I3 PIG3 tumor protein p53 inducible protein 3 protein-coding 1509 chr1 111346549 111346612 + 0 NA promoter-TSS (NM_001300831) promoter-TSS (NM_001300831) 20 NR_125338 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 10426 chr15 73634288 73634451 + 0 NA promoter-TSS (NM_001161363) promoter-TSS (NM_001161363) -957 NM_001161364 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 25842 chr7 22726896 22727031 + 0 NA promoter-TSS (NM_000600) promoter-TSS (NM_000600) -179 NM_000600 3569 Hs.654458 NM_000600 ENSG00000136244 IL6 BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6 interleukin 6 protein-coding 25764 chr7 17633224 17633264 + 0 NA Intergenic Intergenic -74335 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 13483 chr18 44839353 44839457 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 130761 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 26456 chr7 76393256 76393314 + 0 NA intron (NM_080744, intron 9 of 10) CpG -4239 NM_007155 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 1325 chr1 93879169 93879240 + 0 NA promoter-TSS (NM_014597) promoter-TSS (NM_014597) 2 NM_014597 30836 Hs.85769 NM_014597 ENSG00000067334 DNTTIP2 ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2 deoxynucleotidyltransferase terminal interacting protein 2 protein-coding 1643 chr1 145996591 145996758 + 0 NA promoter-TSS (NM_006472) promoter-TSS (NM_006472) -43 NM_006472 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 9512 chr14 88613829 88613920 + 0 NA TTS (NM_001160104) TTS (NM_001160104) 19488 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 16750 chr2 180521436 180521540 + 0 NA Intergenic Intergenic -170616 NR_104322 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 9498 chr14 87264569 87264673 + 0 NA Intergenic MER41B|LTR|ERV1 358843 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 23634 chr5 159928265 159928369 + 0 NA intron (NM_000679, intron 1 of 1) intron (NM_000679, intron 1 of 1) 11584 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 4277 chr10 103396567 103396673 + 0 NA promoter-TSS (NM_001206426) promoter-TSS (NM_001206426) -35 NM_014976 22984 Hs.239499 NM_014976 ENSG00000148843 PDCD11 ALG-4|ALG4|NFBP|RRP5 programmed cell death 11 protein-coding 18316 chr20 57687409 57687532 + 0 NA intron (NM_199171, intron 1 of 3) MER117|DNA|hAT-Charlie 3154 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 16129 chr2 111640640 111640787 + 0 NA Intergenic MIRb|SINE|MIR 130421 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 24021 chr6 10441325 10441485 + 0 NA intron (NR_132993, intron 1 of 3) intron (NR_132993, intron 1 of 3) 1688 NR_049872 100846998 NR_049872 ENSG00000263705 MIR5689 - microRNA 5689 ncRNA 23251 chr5 134511228 134511332 + 0 NA Intergenic Intergenic 4728 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LINC01843 - long intergenic non-protein coding RNA 1843 ncRNA 21492 chr4 80073090 80073230 + 0 NA 5' UTR (NM_058172, exon 1 of 17) 5' UTR (NM_058172, exon 1 of 17) 163 NM_001145794 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF anthrax toxin receptor 2 protein-coding 25213 chr6 138107398 138107514 + 0 NA promoter-TSS (NM_022121) promoter-TSS (NM_022121) 67 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 18760 chr22 29553736 29553882 + 0 NA promoter-TSS (NM_001002878) promoter-TSS (NM_001002878) -62 NM_001002877 8563 Hs.75361 NM_003678 ENSG00000100296 THOC5 C22orf19|Fmip|PK1.3|fSAP79 THO complex 5 protein-coding 23236 chr5 134026715 134026819 + 0 NA Intergenic Intergenic -21634 NM_003374 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 8057 chr13 30577506 30577610 + 0 NA intron (NM_001313893, intron 1 of 4) intron (NM_001313893, intron 1 of 4) 40039 NM_001313893 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 19353 chr3 37936436 37936540 + 0 NA intron (NM_001008392, intron 1 of 7) intron (NM_001008392, intron 1 of 7) -32916 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 16024 chr2 101113436 101113606 + 0 NA intron (NM_001330348, intron 1 of 19) intron (NM_001330348, intron 1 of 19) 37926 NM_001102426 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 19721 chr3 97971911 97972054 + 0 NA 5' UTR (NM_001042533, exon 1 of 10) 5' UTR (NM_001042533, exon 1 of 10) 469 NM_001261829 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 11419 chr16 57277689 57277830 + 0 NA intron (NM_015993, intron 1 of 3) intron (NM_015993, intron 1 of 3) 6913 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 17009 chr2 208255300 208255399 + 0 NA promoter-TSS (NM_001282386) promoter-TSS (NM_001282386) 116 NR_046452 100507475 Hs.668038 NR_046452 ENSG00000231908 IDH1-AS1 - IDH1 antisense RNA 1 ncRNA 6930 chr12 46455881 46456022 + 0 NA intron (NR_125378, intron 3 of 3) intron (NR_125378, intron 3 of 3) 71844 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 30359 chr9 136483685 136483831 + 0 NA promoter-TSS (NM_014866) promoter-TSS (NM_014866) 1 NM_001276418 9919 Hs.522500 NM_014866 ENSG00000148396 SEC16A KIAA0310|SEC16L|p250 SEC16 homolog A, endoplasmic reticulum export factor protein-coding 24921 chr6 90479351 90479487 + 0 NA Intergenic Intergenic 107882 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 18798 chr22 31177559 31177663 + 0 NA intron (NR_024212, intron 1 of 5) intron (NR_024212, intron 1 of 5) 17459 NM_152267 91445 Hs.517553 NM_152267 ENSG00000138942 RNF185 - ring finger protein 185 protein-coding 2935 chr1 230917321 230917425 + 0 NA intron (NM_024525, intron 17 of 22) MIRb|SINE|MIR 42527 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 21032 chr3 195185695 195185785 + 0 NA intron (NM_152531, intron 2 of 3) intron (NM_152531, intron 2 of 3) 37869 NR_102711 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 20861 chr3 186104115 186104219 + 0 NA intron (NM_004454, intron 5 of 12) intron (NM_004454, intron 5 of 12) 4945 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 19211 chr3 15859761 15859905 + 0 NA promoter-TSS (NM_015199) promoter-TSS (NM_015199) -287 NM_015199 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 26133 chr7 42198474 42198578 + 0 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 38493 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 5078 chr11 30360914 30361096 + 0 NA Intergenic Intergenic 37906 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 1706 chr1 151281417 151281569 + 0 NA promoter-TSS (NM_001304764) promoter-TSS (NM_001304764) -62 NM_001304764 57592 Hs.186756 NM_020832 ENSG00000143373 ZNF687 PDB6 zinc finger protein 687 protein-coding 11887 chr17 1061058 1061212 + 0 NA intron (NM_001322840, intron 10 of 22).2 intron (NM_001322840, intron 10 of 22).2 18011 NM_001282149 29 Hs.159306 NM_001092 ENSG00000159842 ABR MDB active BCR-related protein-coding 30917 chrX 105610538 105610642 + 0 NA intron (NM_017416, intron 6 of 10) Tigger3b|DNA|TcMar-Tigger -211953 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 24229 chr6 26251568 26251678 + 0 NA promoter-TSS (NM_003524) promoter-TSS (NM_003524) -28 NM_003524 8345 Hs.247815 NM_003524 ENSG00000275713 HIST1H2BH H2B/j|H2BFJ histone cluster 1 H2B family member h protein-coding 20489 chr3 156826254 156826350 + 0 NA promoter-TSS (NM_001004316) promoter-TSS (NM_001004316) -5 NM_001004316 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 9322 chr14 71322118 71322222 + 0 NA Intergenic Intergenic -76167 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 7719 chr12 118052559 118052724 + 0 NA intron (NM_001278557, intron 1 of 8) intron (NM_001278557, intron 1 of 8) 8570 NM_018639 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding 29665 chr9 98162847 98162951 + 0 NA intron (NM_052820, intron 1 of 11) intron (NM_052820, intron 1 of 11) 9993 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 21137 chr4 4859596 4859657 + 0 NA promoter-TSS (NM_002448) promoter-TSS (NM_002448) -39 NM_002448 4487 Hs.424414 NM_002448 ENSG00000163132 MSX1 ECTD3|HOX7|HYD1|STHAG1 msh homeobox 1 protein-coding 18877 chr22 37844388 37844493 + 0 NA promoter-TSS (NM_138797) promoter-TSS (NM_138797) -69 NR_030395 724028 NR_030395 ENSG00000100124 MIR658 MIRN658|hsa-mir-658 microRNA 658 ncRNA 1147 chr1 77978238 77978361 + 0 NA promoter-TSS (NM_001317100) promoter-TSS (NM_001317100) -859 NM_001317101 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 30801 chrX 69116244 69116348 + 0 NA Intergenic Intergenic 49226 NM_145119 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 27711 chr8 38793247 38793332 + 0 NA intron (NM_001330521, intron 2 of 12) intron (NM_001330521, intron 2 of 12) 6085 NM_006283 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 23298 chr5 138178629 138178741 + 0 NA promoter-TSS (NM_139199) promoter-TSS (NM_139199) -16 NM_001164326 10902 Hs.519337 NM_006696 ENSG00000112983 BRD8 SMAP|SMAP2|p120 bromodomain containing 8 protein-coding 12897 chr17 68247891 68247995 + 0 NA promoter-TSS (NM_001289056) promoter-TSS (NM_001289056) -61 NM_001033570 51321 Hs.293560 NM_016627 ENSG00000196704 AMZ2 - archaelysin family metallopeptidase 2 protein-coding 20514 chr3 158421051 158421294 + 0 NA intron (NM_016625, intron 6 of 9) L2b|LINE|L2 149894 NR_104147 100996447 Hs.369810 NR_104147 ENSG00000243150 LOC100996447 - uncharacterized LOC100996447 ncRNA 22507 chr5 52787805 52787909 + 0 NA promoter-TSS (NM_015946) promoter-TSS (NM_015946) -83 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 19325 chr3 33440600 33440692 + 0 NA promoter-TSS (NM_001128160) promoter-TSS (NM_001128160) -241 NM_001128161 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 (LBP-1a) protein-coding 9866 chr15 35545892 35545996 + 0 NA promoter-TSS (NR_038251) promoter-TSS (NR_038251) -251 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-AS1 ATPBD4-AS1 DPH6 antisense RNA 1 (head to head) ncRNA 15293 chr2 30218782 30218886 + 0 NA Intergenic Intergenic -12697 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - limb bud and heart development protein-coding 15467 chr2 45219083 45219226 + 0 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 35787 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 28852 chr8 144787366 144787510 + 0 NA promoter-TSS (NM_001286769) promoter-TSS (NM_001286769) -93 NM_001286769 80778 Hs.631854 NM_030580 ENSG00000196378 ZNF34 KOX32 zinc finger protein 34 protein-coding 28786 chr8 142224761 142224902 + 0 NA intron (NM_145003, intron 13 of 13) intron (NM_145003, intron 13 of 13) 26475 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 27570 chr8 26111008 26111112 + 0 NA Intergenic Intergenic -65936 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 early B-cell factor 2 protein-coding 21031 chr3 195102705 195102809 + 0 NA intron (NM_152531, intron 3 of 3) L1MA9|LINE|L1 8169 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 22992 chr5 108642396 108642500 + 0 NA Intergenic MER20|DNA|hAT-Charlie 85813 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 31187 chrX 154490720 154490854 + 0 NA promoter-TSS (NM_001142391) promoter-TSS (NM_001142391) -97 NM_001142391 8273 Hs.522826 NM_019848 ENSG00000126903 SLC10A3 DXS253E|P3 solute carrier family 10 member 3 protein-coding 28993 chr9 22446686 22446790 + 0 NA promoter-TSS (NM_022160) promoter-TSS (NM_022160) -103 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 7425 chr12 92341371 92341442 + 0 NA Intergenic Intergenic -80125 NR_027932 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 protein-coding 27618 chr8 28600992 28601100 + 0 NA Intergenic Intergenic 70596 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 4675 chr11 809874 809885 + 0 NA promoter-TSS (NM_001004) promoter-TSS (NM_001004) -57 NM_001004 6181 Hs.437594 NM_001004 ENSG00000177600 RPLP2 D11S2243E|LP2|P2|RPP2 ribosomal protein lateral stalk subunit P2 protein-coding 7181 chr12 58504717 58504874 + 0 NA Intergenic MER117|DNA|hAT-Charlie -86907 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 29241 chr9 73370157 73370261 + 0 NA Intergenic Eulor6B|DNA?|DNA? 218478 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13699 chr18 62763136 62763240 + 0 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 47749 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 1826 chr1 155859323 155859467 + 0 NA promoter-TSS (NM_001282856) promoter-TSS (NM_001282856) 5 NM_001282856 54856 Hs.656361 NM_032292 ENSG00000116580 GON4L GON-4|GON4|YARP gon-4 like protein-coding 19840 chr3 109082038 109082172 + 0 NA intron (NM_014429, intron 8 of 27) L1MA4|LINE|L1 -19351 NR_144461 100506506 Hs.278908 NR_144461 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 9698 chr14 102139698 102139736 + 0 NA promoter-TSS (NM_001242414) promoter-TSS (NM_001242414) 32 NM_001017963 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 21260 chr4 25312779 25312883 + 0 NA promoter-TSS (NM_001318148) promoter-TSS (NM_001318148) 57 NM_024936 29063 Hs.278945 NM_024936 ENSG00000168228 ZCCHC4 HSPC052|ZGRF4 zinc finger CCHC-type containing 4 protein-coding 6988 chr12 50202060 50202214 + 0 NA promoter-TSS (NM_001243775) promoter-TSS (NM_001243775) -604 NM_001243775 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|SREBP3 LIM domain and actin binding 1 protein-coding 820 chr1 46340696 46340790 + 0 NA promoter-TSS (NM_001256128) promoter-TSS (NM_001256128) -435 NM_001256128 387338 Hs.163424 NM_199044 ENSG00000117481 NSUN4 SHTAP NOP2/Sun RNA methyltransferase family member 4 protein-coding 1799 chr1 154983158 154983324 + 0 NA promoter-TSS (NM_001184892) promoter-TSS (NM_001184892) -53 NM_001184891 80308 Hs.118666 NM_025207 ENSG00000160688 FLAD1 FAD1|FADS|LSMFLAD|PP591 flavin adenine dinucleotide synthetase 1 protein-coding 14939 chr2 6865750 6865917 + 0 NA promoter-TSS (NM_001256478) promoter-TSS (NM_001256478) -14 NM_001256478 129607 Hs.7155 NM_207315 ENSG00000134326 CMPK2 NDK|TMPK2|TYKi|UMP-CMPK2 cytidine/uridine monophosphate kinase 2 protein-coding 28868 chr9 504702 504806 + 0 NA promoter-TSS (NM_015158) promoter-TSS (NM_015158) 59 NM_015158 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 6666 chr12 14515084 14515188 + 0 NA intron (NM_024829, intron 6 of 10) intron (NM_024829, intron 6 of 10) -52596 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 14647 chr19 48469161 48469287 + 0 NA promoter-TSS (NM_004228) promoter-TSS (NM_004228) 16 NM_017457 9266 Hs.144011 NM_004228 ENSG00000105443 CYTH2 ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2 cytohesin 2 protein-coding 5579 chr11 68272101 68272109 + 0 NA promoter-TSS (NM_022338) promoter-TSS (NM_022338) -104 NM_022338 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 31138 chrX 149940019 149940111 + 0 NA intron (NR_027456, intron 1 of 11) intron (NR_027456, intron 1 of 11) 1517 NR_027456 100272228 Hs.496916 NR_027456 ENSG00000235703 LINC00894 - long intergenic non-protein coding RNA 894 ncRNA 7307 chr12 77943631 77943735 + 0 NA intron (NM_014903, intron 3 of 38) intron (NM_014903, intron 3 of 38) 112394 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 28493 chr8 118473107 118473211 + 0 NA intron (NM_001101676, intron 2 of 4) LTR33A|LTR|ERVL -147842 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 20515 chr3 158434596 158434700 + 0 NA intron (NM_016625, intron 6 of 9) intron (NM_016625, intron 6 of 9) 136418 NR_104147 100996447 Hs.369810 NR_104147 ENSG00000243150 LOC100996447 - uncharacterized LOC100996447 ncRNA 26368 chr7 69775285 69775389 + 0 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 176418 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 18490 chr21 33588702 33588727 + 0 NA promoter-TSS (NM_017613) promoter-TSS (NM_017613) -6 NM_017613 29980 Hs.436341 NM_017613 ENSG00000159147 DONSON B17|C21orf60 downstream neighbor of SON protein-coding 24910 chr6 89819715 89819880 + 0 NA promoter-TSS (NM_014611) promoter-TSS (NM_014611) -3 NM_014611 23195 Hs.529948 NM_014611 ENSG00000112159 MDN1 Rea1 midasin AAA ATPase 1 protein-coding 23300 chr5 138213313 138213441 + 0 NA promoter-TSS (NM_004661) promoter-TSS (NM_004661) -34 NM_004661 8697 Hs.73625 NM_004661 ENSG00000094880 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 1453 chr1 108570238 108570394 + 0 NA intron (NM_001010883, intron 1 of 10) intron (NM_001010883, intron 1 of 10) 9967 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 866 chr1 51616928 51617032 + 0 NA non-coding (NR_036662, exon 1 of 23) non-coding (NR_036662, exon 1 of 23) 106 NM_148906 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 5454 chr11 65027606 65027780 + 0 NA intron (NM_013306, intron 1 of 7) CpG 285 NM_013306 29907 Hs.80132 NM_013306 ENSG00000110025 SNX15 HSAF001435 sorting nexin 15 protein-coding 29762 chr9 106860263 106860400 + 0 NA Intergenic CpG -2766 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 23992 chr6 8108392 8108496 + 0 NA Intergenic L2b|LINE|L2 -5849 NM_004280 9521 Hs.602353 NM_004280 ENSG00000124802 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 770 chr1 43858453 43858505 + 0 NA intron (NR_073021, intron 6 of 9) intron (NR_073021, intron 6 of 9) 19857 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 29086 chr9 36190637 36190758 + 0 NA promoter-TSS (NM_001184762) promoter-TSS (NM_001184762) -159 NM_001184760 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 30442 chrX 1591453 1591617 + 0 NA promoter-TSS (NR_027383) promoter-TSS (NR_027383) -58 NM_005088 8227 Hs.522572 NM_005088 ENSG00000197976 AKAP17A 721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y A-kinase anchoring protein 17A protein-coding 29233 chr9 73132429 73132595 + 0 NA Intergenic Intergenic -19219 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 23148 chr5 126778368 126778477 + 0 NA intron (NR_134488, intron 1 of 11) CpG 1269 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 15282 chr2 29233566 29233670 + 0 NA exon (NM_004304, exon 14 of 29) exon (NM_004304, exon 14 of 29) 118192 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 616 chr1 35769949 35770111 + 0 NA promoter-TSS (NM_001330490) promoter-TSS (NM_001330490) -80 NM_001190481 63967 Hs.175613 NM_022111 ENSG00000092853 CLSPN - claspin protein-coding 20114 chr3 129027115 129027251 + 0 NA intron (NM_024768, intron 2 of 7) CpG 25554 NM_024768 79825 Hs.134807 NM_024768 ENSG00000114654 EFCC1 C3orf73|CCDC48 EF-hand and coiled-coil domain containing 1 protein-coding 13384 chr18 31157538 31157642 + 0 NA intron (NM_024421, intron 2 of 15) intron (NM_024421, intron 2 of 15) 5266 NM_024421 1823 Hs.567260 NM_004948 ENSG00000134765 DSC1 CDHF1|DG2/DG3 desmocollin 1 protein-coding 8435 chr13 87671318 87671415 + 0 NA promoter-TSS (NR_033829) promoter-TSS (NR_033829) -403 NR_033829 642345 Hs.508337 NR_033829 ENSG00000228824 MIR4500HG - MIR4500 host gene ncRNA 16188 chr2 117836099 117836203 + 0 NA Intergenic CpG 21472 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 MrDb DEAD-box helicase 18 protein-coding 6075 chr11 111871150 111871238 + 0 NA promoter-TSS (NM_001077692) promoter-TSS (NM_001077692) 87 NM_001077691 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9, alpha-1,2-mannosyltransferase protein-coding 23678 chr5 168346582 168346733 + 0 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 54597 NM_001161662 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 25192 chr6 136289887 136290087 + 0 NA promoter-TSS (NM_001077440) promoter-TSS (NM_001077440) -136 NM_001077441 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 5593 chr11 69420755 69420859 + 0 NA Intergenic Intergenic -4864 NM_001319657 102724265 Hs.448669 NM_001319657 ENSG00000255980 LOC102724265 - uncharacterized LOC102724265 protein-coding 26019 chr7 33888377 33888481 + 0 NA Intergenic Intergenic -16482 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 23208 chr5 132387877 132387981 + 0 NA intron (NM_003060, intron 5 of 9) intron (NM_003060, intron 5 of 9) -18013 NR_110997 553103 Hs.570908 NR_110997 ENSG00000233006 LOC553103 - uncharacterized LOC553103 ncRNA 8520 chr13 102128511 102128605 + 0 NA intron (NM_001321937, intron 1 of 3) intron (NM_001321937, intron 1 of 3) -82554 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 28845 chr8 144685962 144685963 + 0 NA promoter-TSS (NM_001308208) promoter-TSS (NM_001308208) -150 NM_001308208 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 4934 chr11 16924890 16925002 + 0 NA intron (NM_001329631, intron 3 of 22) CpG 89470 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 10200 chr15 59339482 59339630 + 0 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 33316 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 10924 chr16 3305402 3305432 + 0 NA promoter-TSS (NM_033208) promoter-TSS (NM_033208) 11 NM_001302109 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 27611 chr8 28198986 28199139 + 0 NA Intergenic Intergenic 105995 NM_018091 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 5096 chr11 32297648 32297752 + 0 NA Intergenic Intergenic 133117 NM_001198552 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 2347 chr1 200483599 200483755 + 0 NA Intergenic Intergenic -73619 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 8951 chr14 49634394 49634415 + 0 NA exon (NM_001083908, exon 1 of 2) exon (NM_001083908, exon 1 of 2) 826 NM_018139 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 9269 chr14 68548263 68548436 + 0 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 80438 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 20021 chr3 121974678 121974765 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 47559 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 19144 chr3 9890518 9890622 + 0 NA promoter-TSS (NM_032492) promoter-TSS (NM_032492) -17 NM_032492 84522 Hs.24054 NM_032492 ENSG00000171135 JAGN1 GL009|SCN6 jagunal homolog 1 protein-coding 13579 chr18 50879010 50879111 + 0 NA promoter-TSS (NM_002396) promoter-TSS (NM_002396) -2 NM_001168335 4200 Hs.233119 NM_002396 ENSG00000082212 ME2 ODS1 malic enzyme 2 protein-coding 15650 chr2 63840834 63840986 + 0 NA promoter-TSS (NM_006759) promoter-TSS (NM_006759) -54 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 777 chr1 43991721 43991761 + 0 NA TTS (NM_003780) TTS (NM_003780) 133 NM_152499 149473 Hs.632394 NM_152499 ENSG00000159214 CCDC24 - coiled-coil domain containing 24 protein-coding 8252 chr13 48976107 48976211 + 0 NA promoter-TSS (NM_001278438) promoter-TSS (NM_001278438) 247 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 29071 chr9 35115892 35116059 + 0 NA promoter-TSS (NM_025182) promoter-TSS (NM_025182) -3 NR_134455 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 29373 chr9 82882820 82882924 + 0 NA Intergenic Intergenic 180256 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 28224 chr8 94895215 94895306 + 0 NA promoter-TSS (NM_057749) promoter-TSS (NM_057749) -6 NM_057749 9134 Hs.521693 NM_004702 ENSG00000175305 CCNE2 CYCE2 cyclin E2 protein-coding 5747 chr11 82901571 82901733 + 0 NA promoter-TSS (NM_145018) promoter-TSS (NM_145018) -43 NM_145018 220042 Hs.165607 NM_145018 ENSG00000165490 DDIAS C11orf82|noxin DNA damage induced apoptosis suppressor protein-coding 3968 chr10 79157715 79157755 + 0 NA intron (NM_020338, intron 3 of 24) intron (NM_020338, intron 3 of 24) 88700 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger MIZ-type containing 1 protein-coding 8641 chr13 113210070 113210174 + 0 NA intron (NM_001008895, intron 2 of 19) CpG-6944 617 NM_001008895 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 1685 chr1 150562182 150562286 + 0 NA intron (NR_104133, intron 3 of 3) intron (NR_104133, intron 3 of 3) 10305 NR_036211 100422997 NR_036211 ENSG00000264553 MIR4257 - microRNA 4257 ncRNA 15771 chr2 70570203 70570320 + 0 NA Intergenic Intergenic -16246 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 15917 chr2 85772374 85772478 + 0 NA intron (NM_032827, intron 2 of 2) CpG 11251 NR_106719 102466516 NR_106719 ENSG00000278783 MIR6071 hsa-mir-6071 microRNA 6071 ncRNA 18616 chr22 17924838 17924916 + 0 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) -17991 NM_001136004 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 17626 chr20 12554534 12554643 + 0 NA Intergenic Intergenic 382375 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 1891 chr1 159177384 159177488 + 0 NA intron (NM_001346510, intron 1 of 8) intron (NM_001346510, intron 1 of 8) 5677 NM_001346510 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 15955 chr2 95165687 95165870 + 0 NA 5' UTR (NM_001282398, exon 1 of 4) 5' UTR (NM_001282398, exon 1 of 4) 361 NM_001017396 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 13017 chr17 75721271 75721313 + 0 NA promoter-TSS (NM_000213) promoter-TSS (NM_000213) -36 NM_001005731 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 7002 chr12 50787045 50787050 + 0 NA intron (NM_005171, intron 2 of 6) L1MCc|LINE|L1 23041 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 21172 chr4 10018956 10019060 + 0 NA exon (NM_020041, exon 2 of 12) exon (NM_020041, exon 2 of 12) 2482 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 13140 chr17 81833281 81833389 + 0 NA promoter-TSS (NM_001093767) promoter-TSS (NM_001093767) -41 NM_207368 348262 Hs.514632 NM_207368 ENSG00000225663 MCRIP1 FAM195B|GRAN2|MCRIP MAPK regulated corepressor interacting protein 1 protein-coding 17073 chr2 215773905 215774009 + 0 NA intron (NR_037195, intron 1 of 9) intron (NR_037195, intron 1 of 9) 55914 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 8501 chr13 99498507 99498658 + 0 NA intron (NR_110731, intron 1 of 4) CpG 724 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 26806 chr7 108246305 108246499 + 0 NA intron (NM_001193583, intron 3 of 29) intron (NM_001193583, intron 3 of 29) -6232 NM_001037132 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 29838 chr9 109469785 109469915 + 0 NA intron (NM_001145368, intron 1 of 24) intron (NM_001145368, intron 1 of 24) -18466 NM_001145370 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 28243 chr8 95801956 95802052 + 0 NA intron (NR_038202, intron 4 of 4) intron (NR_038202, intron 4 of 4) 146344 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 6420 chr11 135075945 135076080 + 0 NA Intergenic TAR1|Satellite|telo 90660 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 4598 chr10 127906823 127906829 + 0 NA promoter-TSS (NM_001323355) promoter-TSS (NM_001323355) -235 NM_001323355 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase, receptor type E protein-coding 13730 chr18 66599324 66599409 + 0 NA intron (NR_073130, intron 1 of 11) L1MA7|LINE|L1 4772 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 28343 chr8 101902401 101902545 + 0 NA intron (NM_001040624, intron 4 of 7) intron (NM_001040624, intron 4 of 7) -81959 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 3798 chr10 67884614 67884762 + 0 NA promoter-TSS (NM_012238) promoter-TSS (NM_012238) 19 NM_012238 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 2496 chr1 206001573 206001674 + 0 NA intron (NM_001164522, intron 1 of 5) intron (NM_001164522, intron 1 of 5) 1843 NM_001164522 338382 Hs.534612 NM_177403 ENSG00000276600 RAB7B RAB7 RAB7B, member RAS oncogene family protein-coding 407 chr1 26111533 26111692 + 0 NA promoter-TSS (NM_001243533) promoter-TSS (NM_001243533) -165 NM_001243533 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 3686 chr10 52387933 52388037 + 0 NA Intergenic Intergenic 67287 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LINC01468 lnc-MBL2-4 long intergenic non-protein coding RNA 1468 ncRNA 14258 chr19 18193066 18193156 + 0 NA promoter-TSS (NM_032683) promoter-TSS (NM_032683) -119 NM_032683 84769 Hs.515254 NM_032683 ENSG00000254858 MPV17L2 FKSG24 MPV17 mitochondrial inner membrane protein like 2 protein-coding 23940 chr6 5260970 5261016 + 0 NA promoter-TSS (NM_020408) promoter-TSS (NM_020408) -25 NM_001318872 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77 phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 10629 chr15 86624726 86624859 + 0 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -307824 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 21415 chr4 67722081 67722160 + 0 NA non-coding (NR_015439, exon 2 of 2) non-coding (NR_015439, exon 2 of 2) 20842 NR_015439 550112 Hs.479879 NR_015439 ENSG00000248049 UBA6-AS1 - UBA6 antisense RNA 1 (head to head) ncRNA 18539 chr21 38907207 38907369 + 0 NA intron (NR_120405, intron 2 of 3) intron (NR_120405, intron 2 of 3) 31141 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 10884 chr16 2223391 2223545 + 0 NA promoter-TSS (NM_001288776) promoter-TSS (NM_001288776) -20 NM_001288778 1877 Hs.513268 NM_004424 ENSG00000167967 E4F1 E4F E4F transcription factor 1 protein-coding 11676 chr16 77540795 77540899 + 0 NA Intergenic Intergenic -105733 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 6252 chr11 123145353 123145457 + 0 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) 49900 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 25331 chr6 150255899 150255942 + 0 NA Intergenic Intergenic 112868 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 5490 chr11 65663120 65663136 + 0 NA promoter-TSS (NM_001145138) promoter-TSS (NM_001145138) -156 NM_001243985 5970 Hs.502875 NM_021975 ENSG00000173039 RELA NFKB3|p65 RELA proto-oncogene, NF-kB subunit protein-coding 13752 chr18 70243253 70243357 + 0 NA Intergenic Intergenic -37579 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 14901 chr2 739931 740035 + 0 NA Intergenic Intergenic -62544 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 9409 chr14 76550728 76550873 + 0 NA Intergenic Intergenic 179453 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 10180 chr15 58506076 58506128 + 0 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -7367 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 24567 chr6 42563861 42563965 + 0 NA promoter-TSS (NM_001184801) promoter-TSS (NM_001184801) -109 NM_015255 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 22889 chr5 93294448 93294552 + 0 NA Intergenic Intergenic 276843 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 15606 chr2 58734439 58734483 + 0 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 213708 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 10998 chr16 10428899 10429003 + 0 NA promoter-TSS (NR_045815) promoter-TSS (NR_045815) 83 NR_045815 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 14501 chr19 42455756 42455860 + 0 NA intron (NR_073179, intron 1 of 1) intron (NR_073179, intron 1 of 1) -12760 NM_198477 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 24694 chr6 52664284 52664390 + 0 NA promoter-TSS (NR_024403) promoter-TSS (NR_024403) -64 NR_024403 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 14383 chr19 35879881 35880002 + 0 NA TTS (NM_005166) TTS (NM_005166) 11496 NM_005166 333 Hs.74565 NM_005166 ENSG00000105290 APLP1 APLP amyloid beta precursor like protein 1 protein-coding 19777 chr3 101779361 101779448 + 0 NA promoter-TSS (NM_001134456) promoter-TSS (NM_001134456) -38 NM_001134456 91775 Hs.595933 NM_145037 ENSG00000144815 NXPE3 FAM55C|MST115|MSTP115 neurexophilin and PC-esterase domain family member 3 protein-coding 9830 chr15 32659685 32659723 + 0 NA intron (NM_001144757, intron 2 of 5) intron (NM_001144757, intron 2 of 5) 13361 NR_135505 105370757 Hs.738329 NR_135505 ENSG00000241818 LOC105370757 - uncharacterized LOC105370757 ncRNA 18289 chr20 56359839 56359847 + 0 NA intron (NM_080821, intron 1 of 2) intron (NM_080821, intron 1 of 2) 916 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 12241 chr17 27340154 27340258 + 0 NA Intergenic LTR8A|LTR|ERV1 46126 NM_134265 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 4948 chr11 17790602 17790706 + 0 NA intron (NR_104041, intron 9 of 9) L1M5|LINE|L1 54706 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 2489 chr1 205631201 205631339 + 0 NA intron (NM_001973, intron 1 of 4) intron (NM_001973, intron 1 of 4) 1602 NM_001973 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 26390 chr7 73557152 73557256 + 0 NA promoter-TSS (NR_036682) promoter-TSS (NR_036682) 68 NR_036682 9275 Hs.647051 NM_001707 ENSG00000106635 BCL7B - BCL tumor suppressor 7B protein-coding 2509 chr1 206674966 206675070 + 0 NA Intergenic Intergenic -10002 NM_032960 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 mitogen-activated protein kinase-activated protein kinase 2 protein-coding 4919 chr11 16606076 16606180 + 0 NA Intergenic Intergenic -129740 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box 6 protein-coding 21626 chr4 100581451 100581555 + 0 NA Intergenic Intergenic -63410 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 25564 chr7 2863765 2863901 + 0 NA Intergenic LTR78B|LTR|ERV1 -19508 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 6661 chr12 14257786 14257871 + 0 NA Intergenic Intergenic -107804 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 6061 chr11 111230581 111230762 + 0 NA Intergenic Intergenic -25311 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 964 chr1 59672952 59673056 + 0 NA intron (NM_001278224, intron 7 of 9) intron (NM_001278224, intron 7 of 9) 60292 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 19046 chr22 49936113 49936217 + 0 NA Intergenic CpG 17535 NM_001284317 79174 Hs.211282 NM_024324 ENSG00000184164 CRELD2 - cysteine rich with EGF like domains 2 protein-coding 6948 chr12 48119170 48119297 + 0 NA promoter-TSS (NM_000289) promoter-TSS (NM_000289) 3 NM_000289 5213 Hs.75160 NM_000289 ENSG00000152556 PFKM ATP-PFK|GSD7|PFK-1|PFK1|PFKA|PFKX|PPP1R122 phosphofructokinase, muscle protein-coding 22201 chr5 9560095 9560199 + 0 NA Intergenic Intergenic 11320 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 4192 chr10 99430849 99430953 + 0 NA promoter-TSS (NM_002079) promoter-TSS (NM_002079) -128 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 14104 chr19 11138748 11138831 + 0 NA Intergenic Intergenic 17023 NM_001317032 147841 Hs.381225 NM_182513 ENSG00000161888 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 9798 chr15 29103930 29103952 + 0 NA intron (NM_005503, intron 9 of 13) CpG 165875 NM_138704 56160 Hs.94011 NM_138704 ENSG00000185115 NSMCE3 HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3 NSE3 homolog, SMC5-SMC6 complex component protein-coding 10084 chr15 50884693 50884797 + 0 NA Intergenic Intergenic -23927 NM_007347 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 epsilon 1 subunit protein-coding 13681 chr18 61852736 61852840 + 0 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 40283 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 30013 chr9 120344377 120344481 + 0 NA Intergenic LTR101_Mam|LTR|ERVL -99379 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 81 chr1 6393690 6393894 + 0 NA promoter-TSS (NM_007274) promoter-TSS (NM_007274) -26 NM_007274 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 17330 chr2 236680070 236680174 + 0 NA Intergenic L1M5|LINE|L1 110385 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 12388 chr17 36534256 36534344 + 0 NA promoter-TSS (NM_178517).2 promoter-TSS (NM_178517).2 -462 NM_001346754 284098 Hs.378885 NM_178517 ENSG00000277161 PIGW Gwt1|HPMRS5 phosphatidylinositol glycan anchor biosynthesis class W protein-coding 27646 chr8 30137391 30137513 + 0 NA exon (NM_001128208, exon 4 of 4) exon (NM_001128208, exon 4 of 4) 7232 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 FKSG89|GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 28104 chr8 81732367 81732538 + 0 NA promoter-TSS (NM_152284) promoter-TSS (NM_152284) -1 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 1300 chr1 91746088 91746192 + 0 NA intron (NM_001195683, intron 4 of 16) intron (NM_001195683, intron 4 of 16) 140139 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 25056 chr6 116681000 116681118 + 0 NA promoter-TSS (NM_002269) promoter-TSS (NM_002269) -145 NM_002269 3841 Hs.182971 NM_002269 ENSG00000196911 KPNA5 IPOA6|SRP6 karyopherin subunit alpha 5 protein-coding 24037 chr6 11232608 11232762 + 0 NA promoter-TSS (NM_001271033) promoter-TSS (NM_001271033) -3 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 7433 chr12 93122834 93122881 + 0 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) -51509 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LOC102724933 - uncharacterized LOC102724933 ncRNA 20589 chr3 168071621 168071696 + 0 NA intron (NM_014498, intron 1 of 15) intron (NM_014498, intron 1 of 15) 24267 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 204 chr1 15346040 15346136 + 0 NA intron (NM_052929, intron 17 of 30) L3|LINE|CR1 -63807 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 15066 chr2 14757103 14757231 + 0 NA Intergenic Intergenic 122076 NM_001291410 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 5190 chr11 38019576 38019698 + 0 NA Intergenic L1PA13|LINE|L1 81036 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 9871 chr15 36373721 36373868 + 0 NA Intergenic Intergenic -205809 NM_001321756 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 28119 chr8 85176913 85177017 + 0 NA promoter-TSS (NR_134311) promoter-TSS (NR_134311) 76 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 31084 chrX 134807130 134807206 + 0 NA promoter-TSS (NM_001170782) promoter-TSS (NM_001170782) -7 NM_001170784 159091 Hs.269127 NM_138819 ENSG00000156500 FAM122C - family with sequence similarity 122C protein-coding 7242 chr12 67828196 67828300 + 0 NA Intergenic L2c|LINE|L2 -98773 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LOC101927901 - uncharacterized LOC101927901 ncRNA 814 chr1 46183363 46183458 + 0 NA intron (NM_005727, intron 3 of 8) intron (NM_005727, intron 3 of 8) -6915 NM_001328655 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 23039 chr5 113427937 113428077 + 0 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 7024 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 11596 chr16 71723212 71723329 + 0 NA intron (NM_015020, intron 1 of 18) CpG 1431 NM_015020 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 21865 chr4 145507781 145507920 + 0 NA intron (NM_001003688, intron 1 of 6) intron (NM_001003688, intron 1 of 6) -4870 NR_108077 101927659 Hs.519005 NR_108077 ENSG00000250582 SMAD1-AS2 - SMAD1 antisense RNA 2 ncRNA 21196 chr4 14917267 14917371 + 0 NA intron (NR_038857, intron 7 of 7) intron (NR_038857, intron 7 of 7) -29150 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 11133 chr16 23149520 23149680 + 0 NA promoter-TSS (NM_020718) promoter-TSS (NM_020718) -330 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 14275 chr19 18588765 18588796 + 0 NA promoter-TSS (NM_001100418) promoter-TSS (NM_001100418) 95 NM_001100418 55049 Hs.655317 NM_017967 ENSG00000006015 C19orf60 - chromosome 19 open reading frame 60 protein-coding 30451 chrX 3470399 3470545 + 0 NA Intergenic MER41A|LTR|ERV1 -123829 NM_015419 25878 Hs.369422 NM_015419 ENSG00000101825 MXRA5 - matrix remodeling associated 5 protein-coding 18457 chr21 29261978 29262082 + 0 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -36765 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 15662 chr2 64606486 64606590 + 0 NA promoter-TSS (NR_034023) promoter-TSS (NR_034023) -774 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LOC339807 - uncharacterized LOC339807 ncRNA 8585 chr13 109236038 109236114 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -68773 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 13707 chr18 63454628 63454801 + 0 NA Intergenic Intergenic -22197 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 26166 chr7 44184619 44184723 + 0 NA intron (NM_000162, intron 1 of 9) intron (NM_000162, intron 1 of 9) 4752 NM_000162 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 16562 chr2 162244655 162244759 + 0 NA Intergenic Intergenic -1150 NM_001291807 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 4927 chr11 16876160 16876297 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 137627 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 30664 chrX 47144659 47144779 + 0 NA promoter-TSS (NM_001204466) promoter-TSS (NM_001204466) 491 NM_019056 54539 Hs.521969 NM_019056 ENSG00000147123 NDUFB11 CI-ESSS|ESSS|NP17.3|Np15|P17.3 NADH:ubiquinone oxidoreductase subunit B11 protein-coding 7710 chr12 117342864 117342968 + 0 NA intron (NM_001204218, intron 1 of 29) L2b|LINE|L2 18886 NM_000620 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 26905 chr7 120583915 120584036 + 0 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 274148 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 22956 chr5 102780578 102780682 + 0 NA intron (NM_001319943, intron 1 of 26) MER20B|DNA|hAT-Charlie 25847 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 749 chr1 43022090 43022140 + 0 NA Intergenic Intergenic -62939 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 11847 chr16 89490655 89490807 + 0 NA promoter-TSS (NM_001256182) promoter-TSS (NM_001256182) -170 NM_001256182 29123 Hs.335003 NM_013275 ENSG00000167522 ANKRD11 ANCO-1|ANCO1|LZ16|T13 ankyrin repeat domain 11 protein-coding 8922 chr14 39266485 39266627 + 0 NA promoter-TSS (NM_001247989) promoter-TSS (NM_001247989) 258 NM_203356 4253 Hs.287694 NM_005930 ENSG00000150526 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6 melanoma inhibitory activity 2 protein-coding 18812 chr22 31829583 31829644 + 0 NA intron (NM_001136029, intron 23 of 41) intron (NM_001136029, intron 23 of 41) 74751 NM_014662 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 4846 chr11 12287996 12288014 + 0 NA intron (NM_032867, intron 1 of 8) intron (NM_032867, intron 1 of 8) 1105 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 11233 chr16 30650642 30650748 + 0 NA promoter-TSS (NM_024031) promoter-TSS (NM_024031) -7 NM_001320464 78994 Hs.293629 NM_024031 ENSG00000156858 PRR14 - proline rich 14 protein-coding 28080 chr8 80341336 80341458 + 0 NA Intergenic Intergenic 100008 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 20994 chr3 193392045 193392149 + 0 NA Intergenic Intergenic -13372 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 13156 chr17 82133705 82133846 + 0 NA intron (NM_198082, intron 14 of 16) AluSx|SINE|Alu -35545 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 26407 chr7 73838838 73838902 + 0 NA intron (NM_152559, intron 5 of 5) intron (NM_152559, intron 5 of 5) 3655 NM_152559 155368 Hs.647042 NM_152559 ENSG00000165171 WBSCR27 - Williams Beuren syndrome chromosome region 27 protein-coding 17275 chr2 231708286 231708448 + 0 NA promoter-TSS (NM_001099285) promoter-TSS (NM_001099285) -158 NM_002823 5757 Hs.459927 NM_002823 ENSG00000187514 PTMA TMSA prothymosin, alpha protein-coding 28274 chr8 98602317 98602458 + 0 NA intron (NM_001256313, intron 4 of 8) MLT1A0|LTR|ERVL-MaLR 175365 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 25171 chr6 133953091 133953224 + 0 NA promoter-TSS (NM_004865) promoter-TSS (NM_004865) -6 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 21408 chr4 61533284 61533386 + 0 NA intron (NM_001322402, intron 4 of 25) intron (NM_001322402, intron 4 of 25) 332079 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 9499 chr14 87430922 87431026 + 0 NA Intergenic Intergenic 525196 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 28137 chr8 86036841 86036945 + 0 NA Intergenic Intergenic 32804 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 21378 chr4 55303951 55304076 + 0 NA Intergenic Intergenic -42208 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 16118 chr2 110149461 110149598 + 0 NA intron (NM_207181, intron 12 of 19) intron (NM_207181, intron 12 of 19) -32963 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T-cell differentiation protein like protein-coding 22391 chr5 37668612 37668766 + 0 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 166133 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 18039 chr20 41645557 41645637 + 0 NA Intergenic Intergenic -27103 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 7248 chr12 68610814 68610968 + 0 NA promoter-TSS (NM_001251918) promoter-TSS (NM_001251918) 52 NM_001010942 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 13461 chr18 39946661 39946765 + 0 NA Intergenic Intergenic -119573 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 10670 chr15 89575244 89575355 + 0 NA promoter-TSS (NM_001308025) promoter-TSS (NM_001308025) -288 NM_152259 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 7252 chr12 71183173 71183277 + 0 NA Intergenic L2b|LINE|L2 -25226 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 3278 chr10 11611561 11611701 + 0 NA non-coding (NR_125732, exon 1 of 3) non-coding (NR_125732, exon 1 of 3) 158 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 2427 chr1 203327400 203327520 + 0 NA Intergenic CpG 21924 NM_006763 7832 Hs.519162 NM_006763 ENSG00000159388 BTG2 APRO1|PC3|TIS21 BTG anti-proliferation factor 2 protein-coding 9841 chr15 33202003 33202157 + 0 NA Intergenic Intergenic -7347 NM_001277313 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 23751 chr5 174045633 174045723 + 0 NA promoter-TSS (NM_015980) promoter-TSS (NM_015980) 74 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 HMP19 - HMP19 protein protein-coding 13074 chr17 78360850 78360954 + 0 NA promoter-TSS (NR_110846) promoter-TSS (NR_110846) -100 NR_110846 101928674 Hs.637297 NR_110845 ENSG00000266970 LOC101928674 - uncharacterized LOC101928674 ncRNA 26110 chr7 41029132 41029273 + 0 NA Intergenic Intergenic -49263 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 5009 chr11 22711481 22711585 + 0 NA intron (NM_005256, intron 2 of 6) L1PA17|LINE|L1 36760 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 - growth arrest specific 2 protein-coding 25584 chr7 4683396 4683500 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 1149 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 30593 chrX 29662822 29662926 + 0 NA intron (NM_014271, intron 5 of 10) intron (NM_014271, intron 5 of 10) 88596 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 23032 chr5 112976593 112976720 + 0 NA promoter-TSS (NR_038352) promoter-TSS (NR_038352) -54 NR_038352 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 23761 chr5 175288139 175288243 + 0 NA Intergenic Intergenic 155969 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 28282 chr8 98983446 98983552 + 0 NA Intergenic Intergenic -29767 NM_017890 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 23887 chr6 2839263 2839470 + 0 NA non-coding (NR_073111, exon 3 of 8) non-coding (NR_073111, exon 3 of 8) 2683 NR_073111 1992 Hs.381167 NM_030666 ENSG00000021355 SERPINB1 EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin family B member 1 protein-coding 18006 chr20 40493622 40493726 + 0 NA Intergenic Intergenic 195566 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 16669 chr2 172836411 172836596 + 0 NA intron (NM_001100397, intron 1 of 27) intron (NM_001100397, intron 1 of 27) 14916 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 1334 chr1 94322911 94322990 + 0 NA Intergenic L2c|LINE|L2 -75190 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 25725 chr7 15130765 15130869 + 0 NA Intergenic Intergenic -289367 NM_004080 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 9103 chr14 58749340 58749501 + 0 NA Intergenic Intergenic -78868 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 26054 chr7 36280940 36281044 + 0 NA intron (NM_030636, intron 3 of 7) intron (NM_030636, intron 3 of 7) 86181 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 25169 chr6 133609741 133609845 + 0 NA intron (NR_109982, intron 4 of 8) L2a|LINE|L2 -211354 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 20238 chr3 138174787 138174891 + 0 NA 5' UTR (NM_016216, exon 1 of 8) 5' UTR (NM_016216, exon 1 of 8) 110 NM_016216 51163 Hs.477700 NM_016216 ENSG00000138231 DBR1 - debranching RNA lariats 1 protein-coding 22371 chr5 35877135 35877178 + 0 NA non-coding (NR_120485, exon 6 of 6) non-coding (NR_120485, exon 6 of 6) 20281 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 1620 chr1 143222648 143222802 + 0 NA Intergenic Intergenic 199867 NR_027354 645166 Hs.744183 NR_027354 LOC645166 - lymphocyte-specific protein 1 pseudogene pseudo 14702 chr19 49766510 49766641 + 0 NA promoter-TSS (NM_014203) promoter-TSS (NM_014203) -348 NM_130787 160 Hs.467125 NM_014203 ENSG00000196961 AP2A1 ADTAA|AP2-ALPHA|CLAPA1 adaptor related protein complex 2 alpha 1 subunit protein-coding 21421 chr4 68368886 68368990 + 0 NA Intergenic Intergenic -18821 NM_001031732 91746 Hs.175955 NM_133370 ENSG00000083896 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 5914 chr11 95991226 95991330 + 0 NA intron (NM_032427, intron 3 of 4) intron (NM_032427, intron 3 of 4) -67071 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 13042 chr17 76585989 76586061 + 0 NA promoter-TSS (NM_006456) promoter-TSS (NM_006456) 38 NM_006456 10610 Hs.592105 NM_006456 ENSG00000070731 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 29269 chr9 75238434 75238538 + 0 NA Intergenic HERVL18-int|LTR|ERVL 150004 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 6589 chr12 10132382 10132486 + 0 NA Intergenic MER67B|LTR|ERV1 -2165 NM_197950 64581 Hs.143929 NM_022570 ENSG00000172243 CLEC7A BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2 C-type lectin domain family 7 member A protein-coding 16797 chr2 188142745 188142849 + 0 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 144894 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 22366 chr5 35617736 35617847 + 0 NA promoter-TSS (NM_144722) promoter-TSS (NM_144722) -96 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 929 chr1 56688576 56688680 + 0 NA intron (NM_006252, intron 2 of 8) L2c|LINE|L2 -43310 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 11100 chr16 20774853 20774892 + 0 NA intron (NM_202000, intron 2 of 8) L1MA4A|LINE|L1 10882 NM_005622 6296 Hs.706754 NM_005622 ENSG00000005187 ACSM3 SA|SAH acyl-CoA synthetase medium-chain family member 3 protein-coding 16983 chr2 207166752 207166885 + 0 NA promoter-TSS (NM_001270942) promoter-TSS (NM_001270942) 38 NM_001270942 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 14127 chr19 11797564 11797704 + 0 NA promoter-TSS (NM_152356) promoter-TSS (NM_152356) -942 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 16373 chr2 136423613 136423717 + 0 NA Intergenic CpG -305510 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 10890 chr16 2513639 2513758 + 0 NA promoter-TSS (NM_001198569) promoter-TSS (NM_001198569) -28 NM_001198569 527 Hs.389107 NM_001694 ENSG00000185883 ATP6V0C ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 ATPase H+ transporting V0 subunit c protein-coding 27470 chr8 19034457 19034628 + 0 NA Intergenic Intergenic -20856 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 16263 chr2 124983808 124983912 + 0 NA Intergenic MER41B|LTR|ERV1 958573 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 2554 chr1 209354393 209354545 + 0 NA Intergenic Intergenic 29013 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 13165 chr17 82292816 82292930 + 0 NA promoter-TSS (NR_135639) promoter-TSS (NR_135639) -59 NR_135639 101929511 Hs.147682 NR_135639 ENSG00000265692 LINC01970 - long intergenic non-protein coding RNA 1970 ncRNA 28566 chr8 123274177 123274321 + 0 NA non-coding (NR_037874, exon 1 of 3) non-coding (NR_037874, exon 1 of 3) 238 NM_001204180 100533106 Hs.707401 NM_001204180 ENSG00000259305 ZHX1-C8orf76 - ZHX1-C8orf76 readthrough protein-coding 9544 chr14 90444145 90444249 + 0 NA Intergenic Intergenic -11033 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 15020 chr2 11830171 11830275 + 0 NA Intergenic Intergenic 6763 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 1538 chr1 113457058 113457207 + 0 NA intron (NM_152900, intron 1 of 20) intron (NM_152900, intron 1 of 20) 66279 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 8351 chr13 73497584 73497688 + 0 NA Intergenic Intergenic -66608 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 29308 chr9 77808103 77808248 + 0 NA intron (NM_002072, intron 3 of 6) intron (NM_002072, intron 3 of 6) -159859 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 12850 chr17 64662212 64662326 + 0 NA promoter-TSS (NM_022739) promoter-TSS (NM_022739) -1 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 21598 chr4 95761688 95761792 + 0 NA Intergenic L1MA3|LINE|L1 -78348 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase (lipoamide) alpha 2 protein-coding 5158 chr11 35567844 35567974 + 0 NA Intergenic L1MA3|LINE|L1 -37609 NM_001282675 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 14445 chr19 39540156 39540234 + 0 NA promoter-TSS (NM_153232) promoter-TSS (NM_153232) 3 NM_153232 163126 Hs.18949 NM_153232 ENSG00000176396 EID2 CRI2|EID-2 EP300 interacting inhibitor of differentiation 2 protein-coding 20717 chr3 177745090 177745162 + 0 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -71739 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 8782 chr14 29216019 29216123 + 0 NA Intergenic Intergenic -430284 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LOC105370424 - uncharacterized LOC105370424 ncRNA 15029 chr2 12155729 12155817 + 0 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) -43357 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 12538 chr17 43361083 43361164 + 0 NA Intergenic CpG 27775 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 6272 chr11 124876368 124876472 + 0 NA exon (NM_022370, exon 17 of 28) exon (NM_022370, exon 17 of 28) 11011 NM_022370 64221 Hs.435621 NM_022370 ENSG00000154134 ROBO3 HGPPS|HGPS|RBIG1|RIG1 roundabout guidance receptor 3 protein-coding 7399 chr12 89756829 89756966 + 0 NA Intergenic Intergenic 47942 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 ATP2B1-AS1 LINC00936 ATP2B1 antisense RNA 1 ncRNA 26523 chr7 84675785 84675937 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 143385 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 1055 chr1 66271394 66271498 + 0 NA intron (NM_001037340, intron 5 of 14) intron (NM_001037340, intron 5 of 14) -60662 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 12657 chr17 50051138 50051242 + 0 NA non-coding (NR_038230, exon 3 of 3) non-coding (NR_038230, exon 3 of 3) 4549 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 30580 chrX 24494854 24494958 + 0 NA intron (NM_001142386, intron 2 of 11) intron (NM_001142386, intron 2 of 11) 29679 NM_005391 5165 Hs.296031 NM_005391 ENSG00000067992 PDK3 CMTX6|GS1-358P8.4 pyruvate dehydrogenase kinase 3 protein-coding 2447 chr1 204073084 204073227 + 0 NA promoter-TSS (NM_005686) promoter-TSS (NM_005686) 37 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 15788 chr2 72115818 72115922 + 0 NA Intergenic Intergenic 31992 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 3140 chr1 246724293 246724397 + 0 NA 5' UTR (NM_016002, exon 1 of 12) 5' UTR (NM_016002, exon 1 of 12) 269 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 24268 chr6 27893147 27893342 + 0 NA promoter-TSS (NM_003514) promoter-TSS (NM_003514) -59 NM_003514 8336 Hs.134999 NM_003514 ENSG00000278677 HIST1H2AM H2A.1|H2A/n|H2AFN|dJ193B12.1 histone cluster 1 H2A family member m protein-coding 24279 chr6 28356200 28356304 + 0 NA promoter-TSS (NM_001135215) promoter-TSS (NM_001135215) 19 NM_001135215 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 6164 chr11 118623074 118623185 + 0 NA intron (NM_001144759, intron 4 of 20) intron (NM_001144759, intron 4 of 20) 15538 NM_001144758 23187 Hs.504062 NM_015157 ENSG00000019144 PHLDB1 LL5A pleckstrin homology like domain family B member 1 protein-coding 11880 chr17 927649 927753 + 0 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 18069 NR_135633 101927727 Hs.666198 NR_135633 ENSG00000262003 LOC101927727 - uncharacterized LOC101927727 ncRNA 4520 chr10 121781250 121781304 + 0 NA intron (NR_110006, intron 9 of 9) intron (NR_110006, intron 9 of 9) 146786 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 29683 chr9 98998982 98999086 + 0 NA intron (NM_001855, intron 6 of 41) intron (NM_001855, intron 6 of 41) 55321 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 24847 chr6 82017478 82017582 + 0 NA Intergenic Intergenic -203338 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 25658 chr7 7564479 7564583 + 0 NA intron (NR_110084, intron 1 of 4) L2a|LINE|L2 1534 NR_110084 101927391 Hs.223837 NR_110084 LOC101927391 - uncharacterized LOC101927391 ncRNA 28905 chr9 5844901 5844987 + 0 NA Intergenic Intergenic -11863 NM_024896 79956 Hs.591078 NM_024896 ENSG00000099219 ERMP1 FXNA|KIAA1815|bA207C16.3 endoplasmic reticulum metallopeptidase 1 protein-coding 11148 chr16 23835894 23835998 + 0 NA promoter-TSS (NM_002738) promoter-TSS (NM_002738) -33 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PRKCB1|PRKCB2 protein kinase C beta protein-coding 27189 chr7 148527723 148527827 + 0 NA Intergenic MER66C|LTR|ERV1 -62790 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 25591 chr7 5045765 5045901 + 0 NA promoter-TSS (NM_001204513) promoter-TSS (NM_001204513) 12 NM_001204456 57786 Hs.396178 NM_021163 ENSG00000146587 RBAK ZNF769 RB associated KRAB zinc finger protein-coding 29457 chr9 87337206 87337310 + 0 NA Intergenic Intergenic -159970 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 26828 chr7 112206407 112206511 + 0 NA promoter-TSS (NM_014705) promoter-TSS (NM_014705) -52 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 19120 chr3 8629543 8629679 + 0 NA intron (NM_001256749, intron 7 of 11) MIR3|SINE|MIR 15187 NR_046358 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 14869 chr19 58362852 58362888 + 0 NA promoter-TSS (NM_001207009) promoter-TSS (NM_001207009) -22 NM_198458 162968 Hs.447840 NM_198458 ENSG00000174586 ZNF497 - zinc finger protein 497 protein-coding 8282 chr13 50909645 50909746 + 0 NA promoter-TSS (NM_024570) promoter-TSS (NM_024570) 17 NM_001142279 79621 Hs.306291 NM_024570 ENSG00000136104 RNASEH2B AGS2|DLEU8 ribonuclease H2 subunit B protein-coding 29808 chr9 108580141 108580245 + 0 NA Intergenic Intergenic 275802 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 26256 chr7 50069278 50069382 + 0 NA intron (NM_007009, intron 3 of 7) HERV15-int|LTR|ERV1 23934 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 16847 chr2 191637795 191637899 + 0 NA Intergenic Tigger15a|DNA|TcMar-Tigger -40225 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 1713 chr1 151513188 151513278 + 0 NA intron (NM_020770, intron 1 of 20) intron (NM_020770, intron 1 of 20) 1847 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 26744 chr7 102464881 102465000 + 0 NA promoter-TSS (NR_049813) promoter-TSS (NR_049813) 57 NM_001317721 222229 Hs.274135 NM_152892 ENSG00000161036 LRWD1 CENP-33|ORCA leucine rich repeats and WD repeat domain containing 1 protein-coding 8459 chr13 96984086 96984199 + 0 NA promoter-TSS (NR_051966) promoter-TSS (NR_051966) 30 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 26948 chr7 124276178 124276282 + 0 NA Intergenic Intergenic 75866 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 23919 chr6 3913178 3913263 + 0 NA Intergenic Intergenic 63854 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 6364 chr11 130580656 130580760 + 0 NA Intergenic Intergenic -86027 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 3722 chr10 58856647 58856787 + 0 NA Intergenic (GAATG)n|Simple_repeat|Simple_repeat 141702 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 29262 chr9 75111351 75111489 + 0 NA intron (NM_012383, intron 1 of 9) intron (NM_012383, intron 1 of 9) 22938 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 25046 chr6 116146048 116146101 + 0 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) -19941 NM_000493 1300 Hs.520339 NM_000493 ENSG00000123500 COL10A1 - collagen type X alpha 1 chain protein-coding 7066 chr12 53441558 53441727 + 0 NA promoter-TSS (NM_018457) promoter-TSS (NM_018457) -7 NM_018457 54458 Hs.744894 NM_018457 ENSG00000205352 PRR13 TXR1 proline rich 13 protein-coding 29287 chr9 76323597 76323701 + 0 NA intron (NM_001190482, intron 31 of 36) intron (NM_001190482, intron 31 of 36) 70879 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 25204 chr6 137657729 137657831 + 0 NA Intergenic Intergenic -7866 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 4450 chr10 118423925 118424029 + 0 NA Intergenic Intergenic 66869 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 18272 chr20 54267564 54267712 + 0 NA Intergenic Intergenic 59675 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 18069 chr20 44531831 44531832 + 0 NA promoter-TSS (NM_181804) promoter-TSS (NM_181804) 50 NM_181804 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 473 chr1 28249052 28249156 + 0 NA Intergenic Intergenic -10348 NM_031459 83667 Hs.469543 NM_031459 ENSG00000130766 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 9927 chr15 40405630 40405734 + 0 NA 5' UTR (NM_001159508, exon 1 of 11) 5' UTR (NM_001159508, exon 1 of 11) 197 NM_001159508 3712 Hs.513646 NM_002225 ENSG00000128928 IVD ACAD2 isovaleryl-CoA dehydrogenase protein-coding 18482 chr21 33287195 33287299 + 0 NA intron (NM_000628, intron 5 of 6) MER67B|LTR|ERV1 20887 NM_000628 3588 Hs.654593 NM_000628 ENSG00000243646 IL10RB CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2 interleukin 10 receptor subunit beta protein-coding 8685 chr14 21384286 21384416 + 0 NA promoter-TSS (NM_007192) promoter-TSS (NM_007192) -85 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 27442 chr8 17734384 17734530 + 0 NA intron (NM_001001924, intron 3 of 14) intron (NM_001001924, intron 3 of 14) -11882 NM_001166393 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 2572 chr1 209747818 209747961 + 0 NA Intergenic CpG -5327 NR_134510 101930114 Hs.663934 NR_134509 ENSG00000227591 LOC101930114 - uncharacterized LOC101930114 ncRNA 12549 chr17 43790446 43790590 + 0 NA Intergenic LTR2752|LTR|ERV1 10083 NM_001136483 284067 Hs.252707 NM_001136483 ENSG00000231256 C17orf105 - chromosome 17 open reading frame 105 protein-coding 12405 chr17 37488922 37489026 + 0 NA promoter-TSS (NM_007026) promoter-TSS (NM_007026) -871 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 11365 chr16 53768645 53768789 + 0 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 64754 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO, alpha-ketoglutarate dependent dioxygenase protein-coding 4782 chr11 8688881 8689035 + 0 NA 3' UTR (NM_000990, exon 5 of 5) 3' UTR (NM_000990, exon 5 of 5) 3519 NR_002977 677826 Hs.745552 NR_002977 ENSG00000212607 SNORA3B ACA3-2|SNORA45|SNORA45B small nucleolar RNA, H/ACA box 3B snoRNA 12370 chr17 35433710 35433848 + 0 NA promoter-TSS (NM_001289009) promoter-TSS (NM_001289009) -603 NM_001289009 55106 Hs.663548 NM_018042 ENSG00000172123 SLFN12 SLFN3 schlafen family member 12 protein-coding 6428 chr12 508921 509025 + 0 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 48596 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 15243 chr2 27711872 27711976 + 0 NA intron (NR_135200, intron 1 of 1) MER102c|DNA|hAT-Charlie 3808 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 2063 chr1 170545614 170545718 + 0 NA 3' UTR (NM_001146039, exon 4 of 4) 3' UTR (NM_001146039, exon 4 of 4) -13057 NR_125958 101928650 Hs.676662 NR_125958 LOC101928650 - uncharacterized LOC101928650 ncRNA 6922 chr12 45990640 45990792 + 0 NA promoter-TSS (NM_004719) promoter-TSS (NM_004719) -98 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 3723 chr10 58920051 58920155 + 0 NA Intergenic Intergenic -79415 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 20436 chr3 153096935 153097078 + 0 NA Intergenic LTR8|LTR|ERV1 -65206 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 27739 chr8 41817909 41817996 + 0 NA intron (NM_001142446, intron 1 of 42) MER34-int|LTR|ERV1 -20330 NM_020476 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 23997 chr6 8627599 8627718 + 0 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) -24551 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 8040 chr13 29684696 29684800 + 0 NA Intergenic Intergenic 37055 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 11159 chr16 25015348 25015511 + 0 NA promoter-TSS (NM_001006634) promoter-TSS (NM_001006634) -51 NM_018054 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 16780 chr2 184554936 184555004 + 0 NA Intergenic L2b|LINE|L2 -43396 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 11533 chr16 68645159 68645256 + 0 NA 5' UTR (NM_001317196, exon 1 of 15) 5' UTR (NM_001317196, exon 1 of 15) 371 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 22380 chr5 36502697 36502798 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -103608 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 30552 chrX 21799030 21799134 + 0 NA Intergenic Intergenic -40456 NM_015884 51360 Hs.443490 NM_015884 ENSG00000012174 MBTPS2 BRESEK|IFAP|KFSD|KFSDX|OLMSX|S2P membrane bound transcription factor peptidase, site 2 protein-coding 22684 chr5 69234903 69234922 + 0 NA non-coding (NR_136690, exon 1 of 11) non-coding (NR_136690, exon 1 of 11) 117 NM_001324070 1022 Hs.184298 NM_001799 ENSG00000134058 CDK7 CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15 cyclin dependent kinase 7 protein-coding 16398 chr2 142323363 142323467 + 0 NA Intergenic MER4E|LTR|ERV1 -191714 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 8482 chr13 98509598 98509731 + 0 NA intron (NM_001032296, intron 2 of 10) MER54B|LTR|ERVL 12461 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 17176 chr2 223941947 223942021 + 0 NA intron (NM_020830, intron 1 of 11) intron (NM_020830, intron 1 of 11) 3403 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 20167 chr3 132317606 132317710 + 0 NA intron (NM_001134194, intron 1 of 10) intron (NM_001134194, intron 1 of 10) 291 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 6147 chr11 118076908 118077011 + 0 NA promoter-TSS (NM_001083947) promoter-TSS (NM_001083947) -53 NM_019894 56649 Hs.161985 NM_019894 ENSG00000137648 TMPRSS4 CAPH2|MT-SP2|TMPRSS3 transmembrane protease, serine 4 protein-coding 25911 chr7 26667639 26667743 + 0 NA 3' UTR (NM_003930, exon 13 of 13) 3' UTR (NM_003930, exon 13 of 13) 28606 NM_001302625 285941 Hs.413394 NM_001145531 C7orf71 - chromosome 7 open reading frame 71 protein-coding 20737 chr3 179322822 179322904 + 0 NA promoter-TSS (NM_001303425) promoter-TSS (NM_001303425) -128 NM_001303426 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 28880 chr9 2844234 2844300 + 0 NA promoter-TSS (NM_014878) promoter-TSS (NM_014878) -137 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 2516 chr1 207007485 207007621 + 0 NA Intergenic Intergenic 25203 NM_023938 79098 Hs.32417 NM_023938 ENSG00000182795 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 8907 chr14 37623643 37623705 + 0 NA intron (NM_001310135, intron 3 of 32) MIR|SINE|MIR 28475 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 21201 chr4 15665848 15665952 + 0 NA Intergenic Intergenic -10488 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 28178 chr8 90754322 90754426 + 0 NA Intergenic Intergenic -37319 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 6116 chr11 114400351 114400527 + 0 NA promoter-TSS (NM_016090) promoter-TSS (NM_016090) -90 NM_001286045 10179 Hs.7527 NM_016090 ENSG00000076053 RBM7 - RNA binding motif protein 7 protein-coding 22064 chr4 181952552 181952656 + 0 NA Intergenic Intergenic 191911 NR_125905 90768 Hs.175465 NR_027107 LOC90768 - uncharacterized LOC90768 ncRNA 4224 chr10 100912792 100912941 + 0 NA 5' UTR (NM_001243770, exon 1 of 1) 5' UTR (NM_001243770, exon 1 of 1) 297 NM_001243770 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 4249 chr10 102394322 102394451 + 0 NA promoter-TSS (NM_001077494) promoter-TSS (NM_001077494) -192 NM_001077494 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 20094 chr3 127525441 127525545 + 0 NA intron (NR_125397, intron 5 of 6) MER44D|DNA|TcMar-Tigger 12287 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 9248 chr14 67414289 67414389 + 0 NA Intergenic Intergenic -2139 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 22004 chr4 169660097 169660247 + 0 NA 5' UTR (NM_001243374, exon 1 of 12) 5' UTR (NM_001243374, exon 1 of 12) 110 NM_001243374 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 19865 chr3 111674468 111674620 + 0 NA promoter-TSS (NM_001185106) promoter-TSS (NM_001185106) -132 NM_001185106 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 12997 chr17 75154553 75154702 + 0 NA promoter-TSS (NM_001288609) promoter-TSS (NM_001288609) 56 NM_016185 51155 Hs.532803 NM_016185 ENSG00000189159 HN1 ARM2|HN1A hematological and neurological expressed 1 protein-coding 24649 chr6 47334514 47334615 + 0 NA Intergenic Intergenic -24617 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 12478 chr17 41348378 41348468 + 0 NA intron (NM_004138, intron 3 of 6) intron (NM_004138, intron 3 of 6) 2389 NM_004138 3883 Hs.512579 NM_004138 ENSG00000006059 KRT33A HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I keratin 33A protein-coding 19051 chr22 50185767 50185871 + 0 NA promoter-TSS (NM_001320485) promoter-TSS (NM_001320485) -93 NM_001320484 80305 Hs.517731 NM_025204 ENSG00000170638 TRABD LP6054|PP2447 TraB domain containing protein-coding 12757 chr17 57850101 57850168 + 0 NA promoter-TSS (NM_016070) promoter-TSS (NM_016070) -62 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 14865 chr19 58278831 58278856 + 0 NA promoter-TSS (NM_021089) promoter-TSS (NM_021089) -109 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 10204 chr15 59492985 59493064 + 0 NA intron (NM_152450, intron 4 of 8) intron (NM_152450, intron 4 of 8) 54851 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 22544 chr5 55232792 55232859 + 0 NA non-coding (NR_125348, exon 1 of 2) non-coding (NR_125348, exon 1 of 2) 166 NR_125348 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 6553 chr12 7189506 7189655 + 0 NA promoter-TSS (NM_001131023) promoter-TSS (NM_001131023) -106 NM_001131023 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 5167 chr11 36019803 36019907 + 0 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 9757 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 21264 chr4 25914166 25914314 + 0 NA promoter-TSS (NM_001145432) promoter-TSS (NM_001145432) 48 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7 small integral membrane protein 20 protein-coding 17785 chr20 23583635 23583757 + 0 NA Intergenic Intergenic -14947 NM_080610 128821 Hs.121554 NM_080610 ENSG00000101435 CST9L CTES7B|bA218C14.1 cystatin 9-like protein-coding 19196 chr3 14371926 14372047 + 0 NA Intergenic Intergenic -19418 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 14984 chr2 9941730 9941834 + 0 NA Intergenic Intergenic -9881 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 1732 chr1 152001652 152001756 + 0 NA Intergenic Intergenic -7466 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 26422 chr7 74453782 74453886 + 0 NA promoter-TSS (NM_001199207) promoter-TSS (NM_001199207) 44 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 3706 chr10 57703959 57704063 + 0 NA Intergenic Tigger17c|DNA|TcMar-Tigger -399452 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 22050 chr4 177310201 177310355 + 0 NA intron (NM_018248, intron 1 of 9) intron (NM_018248, intron 1 of 9) 441 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 17228 chr2 227863392 227863496 + 0 NA Intergenic Intergenic -7932 NM_001330004 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 23373 chr5 141618971 141619075 + 0 NA promoter-TSS (NM_001314007) promoter-TSS (NM_001314007) 32 NM_001079812 1729 Hs.529451 NM_005219 ENSG00000131504 DIAPH1 DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1 diaphanous related formin 1 protein-coding 2718 chr1 219279411 219279447 + 0 NA Intergenic Intergenic 104460 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 12324 chr17 32139039 32139143 + 0 NA Intergenic Intergenic -3363 NM_001033568 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding 28395 chr8 106234798 106234902 + 0 NA Intergenic L1MA9|LINE|L1 -35328 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 28497 chr8 118837896 118838043 + 0 NA Intergenic MER21C|LTR|ERVL 114175 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 17614 chr20 11792042 11792146 + 0 NA Intergenic LTR35|LTR|ERV1 78621 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 13893 chr19 2236703 2236826 + 0 NA promoter-TSS (NR_106847) promoter-TSS (NR_106847) -53 NM_007165 8175 Hs.115232 NM_007165 ENSG00000104897 SF3A2 PRP11|PRPF11|SAP62|SF3a66 splicing factor 3a subunit 2 protein-coding 29950 chr9 115205202 115205395 + 0 NA intron (NM_017418, intron 1 of 7) intron (NM_017418, intron 1 of 7) 63480 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 27931 chr8 61722513 61722632 + 0 NA Intergenic LTR32|LTR|ERVL 7784 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 6071 chr11 111602202 111602306 + 0 NA promoter-TSS (NM_015191) promoter-TSS (NM_015191) -137 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 10874 chr16 1979304 1979408 + 0 NA TTS (NM_006453) TTS (NM_006453) 2193 NM_172168 124056 Hs.191762 NM_144603 ENSG00000196408 NOXO1 P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28 NADPH oxidase organizer 1 protein-coding 14508 chr19 43619323 43619439 + 0 NA intron (NM_182498, intron 1 of 2) CpG 481 NM_182498 126299 Hs.99093 NM_182498 ENSG00000131116 ZNF428 C19orf37|Zfp428 zinc finger protein 428 protein-coding 17222 chr2 227415663 227415767 + 0 NA Intergenic Intergenic -36409 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 27753 chr8 42543235 42543339 + 0 NA intron (NM_001135674, intron 1 of 3) intron (NM_001135674, intron 1 of 3) -1074 NM_006749 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 26717 chr7 100889847 100890001 + 0 NA promoter-TSS (NM_001015072) promoter-TSS (NM_001015072) -206 NM_001015072 402682 Hs.534845 NM_001015072 ENSG00000176125 UFSP1 UFSP UFM1 specific peptidase 1 (inactive) protein-coding 21754 chr4 121479964 121480068 + 0 NA Intergenic L1M1|LINE|L1 -98990 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 24880 chr6 85464353 85464457 + 0 NA intron (NM_002526, intron 1 of 8) intron (NM_002526, intron 1 of 8) 14821 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 4153 chr10 97401277 97401388 + 0 NA promoter-TSS (NM_001145114) promoter-TSS (NM_001145114) 38 NM_015179 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 19288 chr3 28317608 28317712 + 0 NA intron (NR_138585, intron 3 of 3) MIRb|SINE|MIR 31467 NM_001134433 64343 Hs.706676 NM_022461 ENSG00000163512 AZI2 AZ2|NAP1|TILP 5-azacytidine induced 2 protein-coding 16415 chr2 144324533 144324637 + 0 NA intron (NM_001284235, intron 1 of 6) intron (NM_001284235, intron 1 of 6) 7949 NM_001284235 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 706 chr1 40875825 40875929 + 0 NA Intergenic Intergenic -13531 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 4550 chr10 123995706 123995810 + 0 NA Intergenic Intergenic 96666 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 26194 chr7 45978209 45978313 + 0 NA Intergenic Intergenic -56989 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 29116 chr9 62864553 62864696 + 0 NA intron (NR_122076, intron 4 of 5) MER52A|LTR|ERV1 23979 NR_135010 442421 Hs.585349 NR_024496 PTGER4P2-CDK2AP2P2 - PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene pseudo 23661 chr5 166883155 166883224 + 0 NA Intergenic Intergenic 43181 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 14932 chr2 3780941 3781045 + 0 NA intron (NM_001287444, intron 9 of 10) intron (NM_001287444, intron 9 of 10) 77401 NM_001287444 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 16283 chr2 127702173 127702277 + 0 NA 3' UTR (NM_032740, exon 1 of 1) 3' UTR (NM_032740, exon 1 of 1) 1202 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 28634 chr8 127294713 127294763 + 0 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 50101 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 10350 chr15 68641062 68641262 + 0 NA promoter-TSS (NM_001324015) promoter-TSS (NM_001324015) -341 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 16205 chr2 118993275 118993379 + 0 NA intron (NM_006770, intron 16 of 16) intron (NM_006770, intron 16 of 16) 51158 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 22863 chr5 90409771 90409826 + 0 NA promoter-TSS (NM_001297765) promoter-TSS (NM_001297765) -12 NM_001297768 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 22649 chr5 66596181 66596401 + 0 NA promoter-TSS (NM_001290228) promoter-TSS (NM_001290228) -57 NM_001164664 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 3232 chr10 5610787 5610927 + 0 NA Intergenic Intergenic -14739 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 7923 chr12 133037319 133037440 + 0 NA promoter-TSS (NR_110091) promoter-TSS (NR_110091) 93 NM_003428 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 17666 chr20 15039228 15039332 + 0 NA intron (NM_080676, intron 5 of 16) MER39|LTR|ERV1 -109762 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 10864 chr16 1689296 1689400 + 0 NA intron (NM_144570, intron 2 of 4) intron (NM_144570, intron 2 of 4) 11071 NM_144570 90861 Hs.513261 NM_144570 ENSG00000206053 HN1L C16orf34|L11 hematological and neurological expressed 1 like protein-coding 14893 chr2 176980 177192 + 0 NA Intergenic MER131|DNA?|DNA? 79254 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 1438 chr1 107536352 107536479 + 0 NA Intergenic Intergenic 152089 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 23826 chr5 179796254 179796348 + 0 NA exon (NM_145867, exon 5 of 5) exon (NM_145867, exon 5 of 5) 2045 NR_031598 100302156 NR_031598 ENSG00000221394 MIR1229 MIRN1229|hsa-mir-1229 microRNA 1229 ncRNA 30100 chr9 124869053 124869179 + 0 NA 5' UTR (NM_030978, exon 3 of 6) 5' UTR (NM_030978, exon 3 of 6) 6998 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding 25178 chr6 134379194 134379340 + 0 NA Intergenic MER51A|LTR|ERV1 -58449 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 18547 chr21 39380288 39380392 + 0 NA promoter-TSS (NM_004627) promoter-TSS (NM_004627) 53 NM_004627 7485 Hs.198308 NM_004627 ENSG00000182093 WRB CHD5|GET1 tryptophan rich basic protein protein-coding 1903 chr1 159945682 159945762 + 0 NA promoter-TSS (NM_001135050) promoter-TSS (NM_001135050) -126 NM_001135050 57549 Hs.591472 NM_020789 ENSG00000085552 IGSF9 FP18798|IGSF9A|Nrt1 immunoglobulin superfamily member 9 protein-coding 26073 chr7 37987883 37987987 + 0 NA Intergenic Intergenic 66616 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 23959 chr6 7141136 7141270 + 0 NA intron (NM_001003700, intron 1 of 11) CpG 33350 NM_001003699 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 20761 chr3 181899744 181899872 + 0 NA Intergenic Intergenic -52556 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 22035 chr4 175935220 175935324 + 0 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) 67419 NM_005277 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 7063 chr12 53379825 53379929 + 0 NA promoter-TSS (NM_001251825) promoter-TSS (NM_001251825) -318 NM_138473 6667 Hs.620754 NM_003109 ENSG00000185591 SP1 - Sp1 transcription factor protein-coding 22075 chr4 183357127 183357245 + 0 NA Intergenic Intergenic -34760 NM_001185149 100132463 Hs.727475 NM_001185149 ENSG00000185758 CLDN24 CLDN21 claudin 24 protein-coding 26932 chr7 123643908 123644012 + 0 NA Intergenic Intergenic -11847 NM_207163 442721 Hs.592260 NM_207163 ENSG00000170807 LMOD2 C-LMOD|CLMOD leiomodin 2 protein-coding 12331 chr17 32551341 32551445 + 0 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 64306 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 20124 chr3 129278560 129278570 + 0 NA promoter-TSS (NM_020187) promoter-TSS (NM_020187) -276 NM_020187 56941 Hs.458320 NM_020187 ENSG00000183624 HMCES C3orf37|DC12|SRAPD1 5-hydroxymethylcytosine (hmC) binding, ES cell-specific protein-coding 28836 chr8 144373974 144374116 + 0 NA promoter-TSS (NM_174922) promoter-TSS (NM_174922) 30 NM_174922 203054 Hs.283374 NM_174922 ENSG00000173137 ADCK5 - aarF domain containing kinase 5 protein-coding 6276 chr11 124962133 124962233 + 0 NA intron (NM_025004, intron 4 of 15) intron (NM_025004, intron 4 of 15) 8062 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 11007 chr16 10744222 10744326 + 0 NA intron (NM_001323594, intron 2 of 8) CpG 405 NM_001323597 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 18331 chr20 58461996 58462076 + 0 NA intron (NM_153360, intron 3 of 3) L2b|LINE|L2 52902 NM_153360 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 16933 chr2 202249699 202249785 + 0 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -11143 NM_003352 7341 Hs.81424 NM_003352 ENSG00000116030 SUMO1 DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1 small ubiquitin-like modifier 1 protein-coding 30495 chrX 12580724 12580826 + 0 NA intron (NM_014728, intron 2 of 16) MER44D|DNA|TcMar-Tigger -210580 NM_002765 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 6410 chr11 134224483 134224608 + 0 NA promoter-TSS (NM_015261) promoter-TSS (NM_015261) -13 NM_015261 23310 Hs.438550 NM_015261 ENSG00000151503 NCAPD3 CAP-D3|CAPD3|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex subunit D3 protein-coding 17262 chr2 231198493 231198704 + 0 NA promoter-TSS (NM_001291656) promoter-TSS (NM_001291656) 52 NM_025139 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 9405 chr14 76152487 76152617 + 0 NA intron (NM_017926, intron 1 of 9) intron (NM_017926, intron 1 of 9) 667 NM_001322031 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 15260 chr2 28446005 28446109 + 0 NA Intergenic Intergenic -50014 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 4759 chr11 7414044 7414132 + 0 NA intron (NM_175733, intron 3 of 6) intron (NM_175733, intron 3 of 6) 51747 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 19929 chr3 114706773 114706877 + 0 NA intron (NM_015642, intron 4 of 9) intron (NM_015642, intron 4 of 9) 36700 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 25217 chr6 138404061 138404176 + 0 NA promoter-TSS (NM_014320) promoter-TSS (NM_014320) -81 NM_001326381 23593 Hs.486589 NM_014320 ENSG00000051620 HEBP2 C6ORF34B|C6orf34|PP23|SOUL heme binding protein 2 protein-coding 13629 chr18 57621761 57621970 + 0 NA promoter-TSS (NM_004539) promoter-TSS (NM_004539) 80 NM_004539 4677 Hs.465224 NM_004539 ENSG00000134440 NARS ASNRS|NARS1 asparaginyl-tRNA synthetase protein-coding 15822 chr2 74199183 74199221 + 0 NA intron (NM_006636, intron 1 of 7) CpG 639 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 29443 chr9 86407132 86407235 + 0 NA Intergenic Intergenic -52696 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 ZCCHC6 PAPD6|TUT7 zinc finger CCHC-type containing 6 protein-coding 29111 chr9 41229774 41229860 + 0 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -3938 NR_039688 100616184 NR_039688 ENSG00000276029 MIR4477A - microRNA 4477a ncRNA 25338 chr6 150865573 150865672 + 0 NA promoter-TSS (NM_015440) promoter-TSS (NM_015440) -57 NM_001242769 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 22144 chr5 892819 892915 + 0 NA promoter-TSS (NR_134296) promoter-TSS (NR_134296) 13 NM_004237 9319 Hs.436187 NM_004237 ENSG00000071539 TRIP13 16E1BP thyroid hormone receptor interactor 13 protein-coding 1728 chr1 151988667 151988771 + 0 NA intron (NM_002966, intron 1 of 2) intron (NM_002966, intron 1 of 2) 5519 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 22191 chr5 8829472 8829576 + 0 NA Intergenic L1PB3|LINE|L1 -10208 NR_109932 101929284 Hs.403715 NR_109932 LOC101929284 - uncharacterized LOC101929284 ncRNA 9232 chr14 65412464 65412625 + 0 NA promoter-TSS (NR_024334) promoter-TSS (NR_024334) 73 NR_024334 645431 Hs.713717 NR_024334 FUT8-AS1 - FUT8 antisense RNA 1 ncRNA 22648 chr5 66554290 66554433 + 0 NA Intergenic Intergenic -41987 NM_001164664 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 18199 chr20 50790775 50790879 + 0 NA Intergenic Intergenic -4067 NM_017843 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 21849 chr4 143184699 143184729 + 0 NA promoter-TSS (NM_032557) promoter-TSS (NM_032557) 147 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 19064 chr22_KI270733v1_random 135619 135770 + 0 NA TTS (NR_046235).2 TTS (NR_046235).2 5490 NR_003287 100008589 NR_003287 RNA28S5 RN28S1 RNA, 28S ribosomal 5 rRNA 4981 chr11 19508185 19508289 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -1008 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 27319 chr8 1823801 1823941 + 0 NA promoter-TSS (NM_001308153) promoter-TSS (NM_001308153) -105 NM_001308152 9639 Hs.98594 NM_014629 ENSG00000104728 ARHGEF10 GEF10|SNCV Rho guanine nucleotide exchange factor 10 protein-coding 11063 chr16 15967103 15967207 + 0 NA intron (NM_004996, intron 1 of 30) intron (NM_004996, intron 1 of 30) 17578 NM_004996 4363 Hs.391464 NM_004996 ENSG00000103222 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP binding cassette subfamily C member 1 protein-coding 26233 chr7 48035370 48035500 + 0 NA promoter-TSS (NM_001100159) promoter-TSS (NM_001100159) -76 NM_001267865 136288 Hs.258357 NM_001100159 ENSG00000164746 C7orf57 - chromosome 7 open reading frame 57 protein-coding 14345 chr19 32691690 32691882 + 0 NA promoter-TSS (NM_001105570) promoter-TSS (NM_001105570) -175 NM_001105570 390916 Hs.203961 NM_001105570 ENSG00000213965 NUDT19 RP2 nudix hydrolase 19 protein-coding 28956 chr9 19049201 19049350 + 0 NA promoter-TSS (NM_001287049) promoter-TSS (NM_001287049) 79 NM_001287049 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 3374 chr10 21191518 21191622 + 0 NA Intergenic Intergenic 17268 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 1180 chr1 84247594 84247718 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR -50710 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 24577 chr6 43014010 43014016 + 0 NA promoter-TSS (NM_014623) promoter-TSS (NM_014623) -30 NM_001318942 4201 Hs.278362 NM_014623 ENSG00000124733 MEA1 HYS|MEA male-enhanced antigen 1 protein-coding 430 chr1 26695543 26695658 + 0 NA promoter-TSS (NM_139135) promoter-TSS (NM_139135) -431 NM_006015 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 447 chr1 27155057 27155200 + 0 NA promoter-TSS (NM_003047) promoter-TSS (NM_003047) 2 NR_046474 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 11987 chr17 5419736 5419853 + 0 NA promoter-TSS (NM_001320653) promoter-TSS (NM_001320653) -55 NM_002532 4927 Hs.584784 NM_002532 ENSG00000108559 NUP88 - nucleoporin 88 protein-coding 18030 chr20 41232498 41232591 + 0 NA intron (NM_015035, intron 2 of 3) MamGypsy2-LTR|LTR|Gypsy 63521 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 21126 chr4 3074479 3074640 + 0 NA promoter-TSS (NR_045414) promoter-TSS (NR_045414) -45 NR_045414 100750326 Hs.575112 NR_045414 HTT-AS HTT-AS1|HTTAS HTT antisense RNA (head to head) ncRNA 6881 chr12 40907145 40907249 + 0 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -1160 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 29892 chr9 112333537 112333641 + 0 NA promoter-TSS (NM_001244898) promoter-TSS (NM_001244898) 75 NM_001163790 9991 Hs.269988 NM_005156 ENSG00000119314 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 7180 chr12 58425558 58425691 + 0 NA Intergenic Intergenic -166078 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 19989 chr3 119677370 119677539 + 0 NA promoter-TSS (NM_005694) promoter-TSS (NM_005694) -58 NM_005694 10063 Hs.534383 NM_005694 ENSG00000138495 COX17 - COX17, cytochrome c oxidase copper chaperone protein-coding 5399 chr11 63531610 63531724 + 0 NA Intergenic MER66C|LTR|ERV1 -5134 NM_004585 5920 Hs.17466 NM_004585 ENSG00000133321 RARRES3 HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3 retinoic acid receptor responder 3 protein-coding 4569 chr10 125064958 125065012 + 0 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -32115 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 1022 chr1 64263376 64263584 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR 59862 NM_152489 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U (putative) protein-coding 23934 chr6 4775760 4775864 + 0 NA promoter-TSS (NM_004824) promoter-TSS (NM_004824) -634 NM_004824 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y-like protein-coding 4395 chr10 114337051 114337131 + 0 NA intron (NM_032550, intron 2 of 18) intron (NM_032550, intron 2 of 18) 67687 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 28290 chr8 100208277 100208381 + 0 NA intron (NM_003114, intron 10 of 18) HERVL-int|LTR|ERVL 49994 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 25064 chr6 118388574 118388589 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -112792 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 9380 chr14 74988324 74988449 + 0 NA Intergenic Intergenic -14523 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 5991 chr11 104570522 104570626 + 0 NA intron (NR_120585, intron 2 of 3) intron (NR_120585, intron 2 of 3) 38728 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LOC102723895 - uncharacterized LOC102723895 ncRNA 6031 chr11 108593690 108593724 + 0 NA promoter-TSS (NM_015065) promoter-TSS (NM_015065) 31 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 6201 chr11 119907307 119907405 + 0 NA Intergenic Intergenic 177773 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 7225 chr12 64610402 64610501 + 0 NA promoter-TSS (NM_178169) promoter-TSS (NM_178169) -62 NR_040718 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 6968 chr12 49131341 49131477 + 0 NA 5' UTR (NM_006082, exon 1 of 4) 5' UTR (NM_006082, exon 1 of 4) 112 NM_006082 10376 Hs.524390 NM_006082 ENSG00000123416 TUBA1B K-ALPHA-1 tubulin alpha 1b protein-coding 29672 chr9 98263900 98264042 + 0 NA Intergenic Intergenic -8250 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 15736 chr2 69298462 69298566 + 0 NA Intergenic Intergenic 88740 NM_001244710 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 20319 chr3 142925275 142925379 + 0 NA Intergenic L1MC1|LINE|L1 -1348 NR_038455 100507389 Hs.38715 NR_038455 ENSG00000243818 LOC100507389 - uncharacterized LOC100507389 ncRNA 4820 chr11 10792662 10792766 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity 8894 NR_004403 692223 Hs.723086 NR_004403 ENSG00000238622 SNORD97 U97 small nucleolar RNA, C/D box 97 snoRNA 1762 chr1 153536077 153536257 + 0 NA promoter-TSS (NM_014624) promoter-TSS (NM_014624) 74 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 23050 chr5 115349492 115349596 + 0 NA Intergenic Intergenic -52783 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 24453 chr6 35688936 35689074 + 0 NA promoter-TSS (NM_001145776) promoter-TSS (NM_001145776) -63 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FK506 binding protein 5 protein-coding 22059 chr4 180380888 180380992 + 0 NA Intergenic MER58A|DNA|hAT-Charlie 778209 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 24337 chr6 30742755 30742859 + 0 NA promoter-TSS (NM_005803).3 promoter-TSS (NM_005803).3 44 NM_005803 10211 Hs.179986 NM_005803 ENSG00000137312 FLOT1 - flotillin 1 protein-coding 18319 chr20 57698281 57698418 + 0 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -7725 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 3080 chr1 241689072 241689176 + 0 NA intron (NM_144625, intron 7 of 26) L1MCa|LINE|L1 36846 NM_144625 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 26710 chr7 100673493 100673541 + 0 NA promoter-TSS (NM_005273) promoter-TSS (NM_005273) -223 NM_005273 2783 Hs.185172 NM_005273 ENSG00000172354 GNB2 - G protein subunit beta 2 protein-coding 18661 chr22 20917226 20917379 + 0 NA promoter-TSS (NM_005207) promoter-TSS (NM_005207) -124 NM_005207 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 10467 chr15 75625629 75625850 + 0 NA 5' UTR (NM_005701, exon 1 of 9) 5' UTR (NM_005701, exon 1 of 9) 366 NM_001042581 10073 Hs.21577 NM_005701 ENSG00000169371 SNUPN KPNBL|RNUT1|Snurportin1 snurportin 1 protein-coding 22778 chr5 79514507 79514611 + 0 NA promoter-TSS (NM_001277078) promoter-TSS (NM_001277078) -723 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffolding protein 1 protein-coding 1144 chr1 77779610 77779738 + 0 NA promoter-TSS (NM_198549) promoter-TSS (NM_198549) 50 NM_198549 374986 Hs.437755 NM_198549 ENSG00000180488 MIGA1 FAM73A mitoguardin 1 protein-coding 27367 chr8 9188169 9188273 + 0 NA promoter-TSS (NR_125431) promoter-TSS (NR_125431) -778 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 15126 chr2 19711571 19711718 + 0 NA Intergenic UCON78|DNA|DNA -157210 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 15959 chr2 95316282 95316358 + 0 NA intron (NM_013434, intron 2 of 8) intron (NM_013434, intron 2 of 8) 18996 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 19405 chr3 41962337 41962441 + 0 NA promoter-TSS (NM_017886) promoter-TSS (NM_017886) 51 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 6750 chr12 25458344 25458448 + 0 NA Intergenic L2c|LINE|L2 94887 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 18508 chr21 36155695 36155812 + 0 NA intron (NR_038894, intron 1 of 2) intron (NR_038894, intron 1 of 2) 555 NR_038892 100506428 Hs.651214 NR_038892 ENSG00000236830 CBR3-AS1 PlncRNA-1|PlncRNA1 CBR3 antisense RNA 1 ncRNA 24997 chr6 109094964 109095123 + 0 NA promoter-TSS (NM_014454) promoter-TSS (NM_014454) -110 NM_001083535 285753 Hs.632616 NM_173830 ENSG00000183137 CEP57L1 C6orf182|bA487F23.2|cep57R centrosomal protein 57 like 1 protein-coding 2047 chr1 169312337 169312450 + 0 NA intron (NM_013330, intron 3 of 11) MLT1H2|LTR|ERVL-MaLR -55486 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 144 chr1 9910468 9910624 + 0 NA promoter-TSS (NM_001012329) promoter-TSS (NM_001012329) -288 NM_001012329 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 18285 chr20 56245953 56246057 + 0 NA Intergenic Intergenic -2727 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 8726 chr14 23154198 23154298 + 0 NA intron (NM_012244, intron 3 of 10) intron (NM_012244, intron 3 of 10) 202 NM_182728 23428 Hs.596643 NM_012244 ENSG00000092068 SLC7A8 LAT2|LPI-PC1 solute carrier family 7 member 8 protein-coding 25133 chr6 127972217 127972365 + 0 NA intron (NM_001135648, intron 30 of 30) intron (NM_001135648, intron 30 of 30) -53660 NM_001164687 387357 Hs.661756 NM_001010923 ENSG00000172673 THEMIS C6orf190|C6orf207|GASP|SPOT|TSEPA thymocyte selection associated protein-coding 3696 chr10 53256708 53256905 + 0 NA Intergenic Intergenic -485106 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 22642 chr5 65879810 65879911 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -46694 NM_001253701 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 28140 chr8 86275175 86275290 + 0 NA Intergenic MER4B|LTR|ERV1 -44857 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 21520 chr4 83110564 83110668 + 0 NA promoter-TSS (NM_001130716) promoter-TSS (NM_001130716) -757 NM_001130716 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta specific 8 protein-coding 906 chr1 54564416 54564543 + 0 NA intron (NM_015547, intron 1 of 16) intron (NM_015547, intron 1 of 16) 16345 NM_147161 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 1349 chr1 94855020 94855124 + 0 NA intron (NM_152369, intron 8 of 13) intron (NM_152369, intron 8 of 13) 34528 NM_152369 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 7969 chr13 23794998 23795077 + 0 NA intron (NM_005932, intron 16 of 18) intron (NM_005932, intron 16 of 18) -93852 NM_001014442 542767 Hs.642624 NM_001014442 C1QTNF9B-AS1 PCOTH C1QTNF9B antisense RNA 1 protein-coding 177 chr1 12161890 12161994 + 0 NA Intergenic Intergenic -5001 NR_107000 102465836 NR_107000 ENSG00000028137 MIR7846 hsa-mir-7846 microRNA 7846 ncRNA 28894 chr9 4741193 4741300 + 0 NA promoter-TSS (NM_016282) promoter-TSS (NM_016282) 63 NM_001199852 50808 Hs.732022 NM_016282 ENSG00000147853 AK3 AK3L1|AK6|AKL3L|AKL3L1|FIX adenylate kinase 3 protein-coding 30110 chr9 125513621 125513813 + 0 NA intron (NM_001006621, intron 5 of 9) intron (NM_001006621, intron 5 of 9) 193517 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 9509 chr14 88554819 88554854 + 0 NA promoter-TSS (NM_007039) promoter-TSS (NM_007039) -57 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase, non-receptor type 21 protein-coding 8035 chr13 29457443 29457547 + 0 NA intron (NM_001033602, intron 7 of 13) L1ME2|LINE|L1 28855 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated tumor suppressor candidate 2 protein-coding 22159 chr5 2149242 2149340 + 0 NA Intergenic Intergenic 162910 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 2940 chr1 231241177 231241309 + 0 NA promoter-TSS (NM_001300830) promoter-TSS (NM_001300830) -56 NM_152379 128061 Hs.743464 NM_152379 ENSG00000143633 C1orf131 - chromosome 1 open reading frame 131 protein-coding 17500 chr20 4085371 4085507 + 0 NA Intergenic Intergenic -63340 NM_175840 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 4345 chr10 110530375 110530397 + 0 NA Intergenic CpG 32519 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 14606 chr19 46902462 46902641 + 0 NA Intergenic Intergenic -16125 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 15378 chr2 38396175 38396279 + 0 NA Intergenic Intergenic -17643 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 30181 chr9 128329065 128329179 + 0 NA intron (NM_001305942, intron 3 of 3) MIRb|SINE|MIR -6342 NM_001329861 26995 Hs.632685 NM_015679 ENSG00000167112 TRUB2 CLONE24922 TruB pseudouridine synthase family member 2 protein-coding 27340 chr8 6909962 6909979 + 0 NA Intergenic Intergenic 16106 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin alpha 6 protein-coding 9943 chr15 40857640 40857788 + 0 NA TTS (NM_001032367) TTS (NM_001032367) 13269 NM_001032367 6692 Hs.233950 NM_003710 ENSG00000166145 SPINT1 HAI|HAI1|MANSC2 serine peptidase inhibitor, Kunitz type 1 protein-coding 13548 chr18 49207401 49207505 + 0 NA intron (NM_017653, intron 13 of 16) MLT2C2|LTR|ERVL -157685 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 23859 chr6 1068150 1068254 + 0 NA intron (NR_027116, intron 1 of 3) intron (NR_027116, intron 1 of 3) 33130 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 28358 chr8 102864150 102864293 + 0 NA promoter-TSS (NM_148174) promoter-TSS (NM_148174) -21 NM_148174 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 15235 chr2 27428538 27428679 + 0 NA promoter-TSS (NM_001321359) promoter-TSS (NM_001321359) 56 NM_001321358 29959 Hs.515876 NM_013392 ENSG00000115216 NRBP1 BCON3|MADM|MUDPNP|NRBP nuclear receptor binding protein 1 protein-coding 16507 chr2 157628606 157628759 + 0 NA 5' UTR (NM_001111032, exon 1 of 8) 5' UTR (NM_001111032, exon 1 of 8) 205 NM_001111032 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 7774 chr12 121443319 121443469 + 0 NA TTS (NR_106957) TTS (NR_106957) 958 NR_106957 102465665 NR_106957 ENSG00000089094 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 11572 chr16 70251908 70252024 + 0 NA promoter-TSS (NM_058219) promoter-TSS (NM_058219) -36 NM_058219 118460 Hs.660633 NM_058219 ENSG00000223496 EXOSC6 EAP4|MTR3|Mtr3p|hMtr3p|p11 exosome component 6 protein-coding 12413 chr17 38351772 38351876 + 0 NA promoter-TSS (NM_014598) promoter-TSS (NM_014598) -300 NM_014598 30837 Hs.514132 NM_014598 ENSG00000274211 SOCS7 NAP4|NCKAP4 suppressor of cytokine signaling 7 protein-coding 29386 chr9 83623073 83623199 + 0 NA promoter-TSS (NM_001001551) promoter-TSS (NM_001001551) 87 NR_046421 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK, gluconokinase protein-coding 20789 chr3 182980477 182980604 + 0 NA promoter-TSS (NM_020640) promoter-TSS (NM_020640) 61 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 4795 chr11 9385056 9385187 + 0 NA intron (NM_006391, intron 1 of 24) CpG 499 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 493 chr1 29181386 29181514 + 0 NA intron (NM_005626, intron 1 of 5) intron (NM_005626, intron 1 of 5) 675 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 3719 chr10 58436289 58436393 + 0 NA Intergenic Intergenic 51198 NM_001270782 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 27584 chr8 26576983 26577087 + 0 NA promoter-TSS (NM_001386) promoter-TSS (NM_001386) -789 NM_001386 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 22696 chr5 71601673 71601754 + 0 NA intron (NM_022132, intron 4 of 16) intron (NM_022132, intron 4 of 16) 14425 NM_022132 64087 Hs.604789 NM_022132 ENSG00000131844 MCCC2 MCCB methylcrotonoyl-CoA carboxylase 2 protein-coding 20606 chr3 169149508 169149614 + 0 NA intron (NM_001205194, intron 1 of 15) CpG -1827 NM_001164000 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 23789 chr5 177402533 177402637 + 0 NA exon (NM_000505, exon 13 of 14) exon (NM_000505, exon 13 of 14) -1949 NM_001029886 345456 Hs.130196 NM_001029886 ENSG00000196570 PFN3 - profilin 3 protein-coding 21024 chr3 194685799 194685931 + 0 NA promoter-TSS (NM_153690) promoter-TSS (NM_153690) -28 NM_153690 131583 Hs.435080 NM_153690 ENSG00000185112 FAM43A - family with sequence similarity 43 member A protein-coding 4699 chr11 2902166 2902270 + 0 NA promoter-TSS (NM_001315501) promoter-TSS (NM_001315501) -64 NM_001315502 5002 Hs.50868 NM_002555 ENSG00000110628 SLC22A18 BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A solute carrier family 22 member 18 protein-coding 19941 chr3 115790873 115791029 + 0 NA Intergenic Intergenic 167647 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 21473 chr4 77158261 77158302 + 0 NA intron (NM_004354, intron 1 of 7) CpG 1077 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 20832 chr3 184741347 184741451 + 0 NA Intergenic Intergenic -29351 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 - MAGE family member F1 protein-coding 13200 chr18 268056 268160 + 0 NA promoter-TSS (NM_005131) promoter-TSS (NM_005131) -49 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 16997 chr2 207625217 207625294 + 0 NA promoter-TSS (NM_145280) promoter-TSS (NM_145280) 123 NM_001330135 151194 Hs.664764 NM_145280 ENSG00000144401 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 9388 chr14 75230669 75230785 + 0 NA Intergenic MIRb|SINE|MIR -48051 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 4493 chr10 120416078 120416182 + 0 NA Intergenic Intergenic -40824 NR_134516 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 2752 chr1 221470476 221470547 + 0 NA Intergenic Intergenic -134215 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 5750 chr11 83051796 83051991 + 0 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) -10295 NR_033347 100379250 Hs.725115 NR_033347 ENSG00000207221 SNORA70E U70E small nucleolar RNA, H/ACA box 70E snoRNA 6913 chr12 45234671 45234775 + 0 NA intron (NM_001142679, intron 1 of 19) intron (NM_001142679, intron 1 of 19) -18717 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 PLEKHA9 pleckstrin homology domain containing A8 pseudogene 1 pseudo 1993 chr1 165646120 165646224 + 0 NA intron (NM_004528, intron 1 of 5) intron (NM_004528, intron 1 of 5) 15299 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 28638 chr8 127478750 127478843 + 0 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 3343 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLo-1|LINC00860 cancer susceptibility candidate 8 (non-protein coding) ncRNA 18440 chr21 26406123 26406227 + 0 NA intron (NR_135515, intron 1 of 3) intron (NR_135515, intron 1 of 3) 232 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 1499 chr1 110619478 110619628 + 0 NA intron (NM_001204269, intron 1 of 4) intron (NM_001204269, intron 1 of 4) 11921 NM_001204269 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 16288 chr2 127884918 127885022 + 0 NA promoter-TSS (NM_031445) promoter-TSS (NM_031445) -110 NM_031445 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 400 chr1 25875636 25875740 + 0 NA Intergenic CpG -4435 NM_178422 164091 Hs.523652 NM_178422 ENSG00000182749 PAQR7 MPRA|PGLP|mSR progestin and adipoQ receptor family member 7 protein-coding 9832 chr15 32850291 32850348 + 0 NA intron (NM_001277313, intron 17 of 20) intron (NM_001277313, intron 17 of 20) -131454 NR_109767 100131315 Hs.610545 NR_109767 ENSG00000259721 LOC100131315 - uncharacterized LOC100131315 ncRNA 633 chr1 36374757 36374867 + 0 NA intron (NM_032017, intron 1 of 11) intron (NM_032017, intron 1 of 11) 11115 NM_001282547 83931 Hs.471768 NM_032017 ENSG00000196182 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 28279 chr8 98927253 98927331 + 0 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 15279 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 7551 chr12 103840939 103841043 + 0 NA exon (NM_001031701, exon 1 of 14) exon (NM_001031701, exon 1 of 14) 206 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 22212 chr5 10528543 10528647 + 0 NA Intergenic Intergenic -6511 NR_134289 389273 Hs.519206 NR_134289 ENSG00000249160 LOC389273 - uncharacterized LOC389273 ncRNA 21962 chr4 160319328 160319411 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 1051523 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 17817 chr20 25310444 25310595 + 0 NA intron (NM_001042472, intron 6 of 12) intron (NM_001042472, intron 6 of 12) 62449 NM_002862 5834 Hs.368157 NM_002862 ENSG00000100994 PYGB GPBB glycogen phosphorylase B protein-coding 17777 chr20 23201188 23201292 + 0 NA Intergenic Intergenic -68604 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 13660 chr18 59697270 59697394 + 0 NA promoter-TSS (NM_133459) promoter-TSS (NM_133459) 80 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 3594 chr10 38919138 38919263 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 222604 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 21594 chr4 94488824 94488903 + 0 NA intron (NM_001256428, intron 2 of 11) intron (NM_001256428, intron 2 of 11) 37006 NM_001011515 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 1549 chr1 114610734 114610838 + 0 NA intron (NM_198459, intron 6 of 17) intron (NM_198459, intron 6 of 17) -29142 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2, pre-mRNA processing factor protein-coding 1208 chr1 85289631 85289742 + 0 NA Intergenic Intergenic -12782 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 27045 chr7 134432776 134432905 + 0 NA Intergenic Intergenic 26352 NR_144376 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 5533 chr11 66744527 66744666 + 0 NA promoter-TSS (NM_024650) promoter-TSS (NM_024650) -140 NM_001302084 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 15910 chr2 85585129 85585233 + 0 NA intron (NM_006634, intron 1 of 2) intron (NM_006634, intron 1 of 2) 773 NM_006634 10791 Hs.534373 NM_006634 ENSG00000168899 VAMP5 - vesicle associated membrane protein 5 protein-coding 11353 chr16 53099633 53099779 + 0 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) 44673 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 21054 chr3 196432509 196432646 + 0 NA promoter-TSS (NM_015562) promoter-TSS (NM_015562) -103 NM_015562 26043 Hs.518524 NM_015562 ENSG00000163960 UBXN7 UBXD7 UBX domain protein 7 protein-coding 28807 chr8 143334672 143334683 + 0 NA intron (NM_001258447, intron 1 of 13) CpG 214 NM_052963 116447 Hs.528574 NM_052963 ENSG00000184428 TOP1MT - topoisomerase (DNA) I, mitochondrial protein-coding 16936 chr2 202634801 202634950 + 0 NA promoter-TSS (NM_173511) promoter-TSS (NM_173511) -303 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 15083 chr2 16617455 16617559 + 0 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 48359 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 11738 chr16 82011464 82011568 + 0 NA promoter-TSS (NM_145168) promoter-TSS (NM_145168) -28 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 19916 chr3 113838709 113838875 + 0 NA promoter-TSS (NM_017577) promoter-TSS (NM_017577) -42 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 5870 chr11 94128823 94128965 + 0 NA promoter-TSS (NM_015368) promoter-TSS (NM_015368) -34 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 13397 chr18 31490545 31490649 + 0 NA Intergenic Intergenic -7407 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 16789 chr2 186589929 186590072 + 0 NA promoter-TSS (NM_001145000) promoter-TSS (NM_001145000) -63 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 9349 chr14 73633812 73633916 + 0 NA Intergenic CpG -11011 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16 dynein axonemal light chain 1 protein-coding 16360 chr2 134918570 134918666 + 0 NA promoter-TSS (NM_001320748) promoter-TSS (NM_001320748) -12 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 25200 chr6 137056382 137056471 + 0 NA Intergenic L1MB7|LINE|L1 -11246 NM_014432 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 15500 chr2 47034235 47034301 + 0 NA intron (NM_020458, intron 15 of 19) intron (NM_020458, intron 15 of 19) -92413 NM_001171511 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 23204 chr5 132294303 132294407 + 0 NA promoter-TSS (NM_003059) promoter-TSS (NM_003059) -97 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 21210 chr4 16141038 16141209 + 0 NA Intergenic Intergenic -57123 NM_001145848 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 10880 chr16 2155478 2155600 + 0 NA promoter-TSS (NR_132114) promoter-TSS (NR_132114) -181 NR_132114 100507303 Hs.369728 NR_132114 ENSG00000260260 SNHG19 SNORD60HG small nucleolar RNA host gene 19 ncRNA 23902 chr6 3160219 3160332 + 0 NA Intergenic Intergenic -2726 NM_001310315 7280 Hs.654543 NM_001069 ENSG00000137267 TUBB2A CDCBM5|TUBB|TUBB2 tubulin beta 2A class IIa protein-coding 5823 chr11 88536045 88536149 + 0 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 31521 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 28404 chr8 106864035 106864054 + 0 NA Intergenic Intergenic -93800 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 20156 chr3 131349957 131350147 + 0 NA 3' UTR (NM_001146003, exon 16 of 16) 3' UTR (NM_001146003, exon 16 of 16) -11793 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 17234 chr2 229363441 229363609 + 0 NA intron (NM_139072, intron 12 of 12) intron (NM_139072, intron 12 of 12) -92184 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 5871 chr11 94129099 94129245 + 0 NA 5' UTR (NM_015368, exon 1 of 5) 5' UTR (NM_015368, exon 1 of 5) 244 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 16113 chr2 110101529 110101573 + 0 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) 15015 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T-cell differentiation protein like protein-coding 5380 chr11 62706205 62706392 + 0 NA promoter-TSS (NM_032667) promoter-TSS (NM_032667) 17 NM_001130702 26580 Hs.533709 NM_032667 ENSG00000168000 BSCL2 GNG3LG|HMN5|PELD|SPG17 BSCL2, seipin lipid droplet biogenesis associated protein-coding 13440 chr18 35581074 35581178 + 0 NA Intergenic CpG -10611 NR_039771 100616257 NR_039771 ENSG00000283514 MIR3975 - microRNA 3975 ncRNA 5807 chr11 86743518 86743672 + 0 NA Intergenic Intergenic -47464 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 protease, serine 23 protein-coding 29743 chr9 105447967 105448088 + 0 NA promoter-TSS (NM_001330739) promoter-TSS (NM_001330739) -7 NM_001330739 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 18645 chr22 20291045 20291075 + 0 NA Intergenic Intergenic -22767 NM_023004 65078 Hs.30868 NM_023004 ENSG00000040608 RTN4R NGR|NOGOR reticulon 4 receptor protein-coding 17254 chr2 230694388 230694550 + 0 NA intron (NR_040038, intron 3 of 3) intron (NR_040038, intron 3 of 3) 6060 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 8861 chr14 35294406 35294527 + 0 NA intron (NM_001282232, intron 1 of 6) MIR|SINE|MIR 2149 NM_002791 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 19023 chr22 46296662 46296815 + 0 NA promoter-TSS (NR_024009) promoter-TSS (NR_024009) -3 NM_016426 51512 Hs.386189 NM_016426 ENSG00000075218 GTSE1 B99 G2 and S-phase expressed 1 protein-coding 18551 chr21 41715915 41716084 + 0 NA promoter-TSS (NR_027272) promoter-TSS (NR_027272) -224 NR_027272 150135 Hs.350679 NM_152506 ENSG00000236384 LINC00479 C21orf129|PRED76 long intergenic non-protein coding RNA 479 ncRNA 5266 chr11 57322641 57322745 + 0 NA intron (NM_033396, intron 1 of 11) intron (NM_033396, intron 1 of 11) 2246 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 3663 chr10 49308091 49308157 + 0 NA intron (NM_001135196, intron 1 of 2) intron (NM_001135196, intron 1 of 2) 8982 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 - chromosome 10 open reading frame 71 protein-coding 30294 chr9 132355103 132355253 + 0 NA promoter-TSS (NM_015046) promoter-TSS (NM_015046) -193 NM_015046 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAR1|bA479K20.2 senataxin protein-coding 5276 chr11 57667865 57668015 + 0 NA promoter-TSS (NM_015457) promoter-TSS (NM_015457) -62 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 10063 chr15 50003791 50003960 + 0 NA intron (NR_073597, intron 7 of 26) intron (NR_073597, intron 7 of 26) 109441 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 16779 chr2 183284827 183284914 + 0 NA Intergenic Intergenic 160515 NM_001287585 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 2337 chr1 199857200 199857304 + 0 NA Intergenic Intergenic -170350 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 18190 chr20 50558754 50558858 + 0 NA intron (NM_001278618, intron 1 of 8) HAL1|LINE|L1 -26980 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 8046 chr13 29991481 29991585 + 0 NA Intergenic Intergenic 55002 NR_033889 440131 Hs.132371 NM_001010918 LINC00544 - long intergenic non-protein coding RNA 544 ncRNA 2243 chr1 185567089 185567226 + 0 NA intron (NR_110793, intron 2 of 3) intron (NR_110793, intron 2 of 3) 61331 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 16008 chr2 99181010 99181135 + 0 NA promoter-TSS (NM_001320417) promoter-TSS (NM_001320417) -7 NM_145212 51263 Hs.346736 NM_016503 ENSG00000185414 MRPL30 L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28 mitochondrial ribosomal protein L30 protein-coding 21168 chr4 9691758 9691888 + 0 NA Intergenic CpG -89811 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 1087 chr1 67890029 67890139 + 0 NA intron (NR_040077, intron 1 of 9) L2|LINE|L2 -56612 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 30260 chr9 130579448 130579506 + 0 NA promoter-TSS (NM_003934) promoter-TSS (NM_003934) 17 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 13610 chr18 54712510 54712614 + 0 NA Intergenic LTR1A2|LTR|ERV1 -115915 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 28887 chr9 4262761 4262865 + 0 NA intron (NM_001042413, intron 2 of 10) MER119|DNA|hAT-Charlie 37222 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 24322 chr6 30516145 30516290 + 0 NA Intergenic Intergenic 26811 NM_005516 3133 Hs.650174 NM_005516 ENSG00000204592 HLA-E HLA-6.2|QA1 major histocompatibility complex, class I, E protein-coding 4256 chr10 102479044 102479148 + 0 NA TTS (NM_005736) TTS (NM_005736) 17683 NM_024789 79847 Hs.309069 NM_024789 ENSG00000138111 MFSD13A C10orf77|TMEM180|bA18I14.8 major facilitator superfamily domain containing 13A protein-coding 22738 chr5 75037202 75037385 + 0 NA Intergenic Intergenic -6394 NM_016591 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3 glucosaminyl (N-acetyl) transferase 4, core 2 protein-coding 1860 chr1 156741186 156741256 + 0 NA promoter-TSS (NM_145729) promoter-TSS (NM_145729) -90 NM_024540 79590 Hs.418233 NM_024540 ENSG00000143314 MRPL24 L24mt|MRP-L18|MRP-L24 mitochondrial ribosomal protein L24 protein-coding 10217 chr15 60297228 60297365 + 0 NA Intergenic Intergenic 100690 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 22354 chr5 34008055 34008153 + 0 NA promoter-TSS (NM_014324) promoter-TSS (NM_014324) 11 NM_203382 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 25325 chr6 150005213 150005317 + 0 NA promoter-TSS (NR_024045) promoter-TSS (NR_024045) -121 NR_024045 646024 Hs.560537 NR_024045 ENSG00000218358 RAET1K - retinoic acid early transcript 1K pseudogene pseudo 20062 chr3 124878619 124878763 + 0 NA intron (NM_002213, intron 1 of 14) intron (NM_002213, intron 1 of 14) 8614 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 9615 chr14 95534842 95534999 + 0 NA promoter-TSS (NR_001459) promoter-TSS (NR_001459) -48 NR_001459 283596 Hs.448753 NR_001459 SNHG10 C14orf62|LINC00063|NCRNA00063 small nucleolar RNA host gene 10 ncRNA 12226 chr17 22521316 22521468 + 0 NA Intergenic Intergenic -1719 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2-like 1 protein-coding 5379 chr11 62672336 62672440 + 0 NA promoter-TSS (NM_024099) promoter-TSS (NM_024099) -619 NM_024099 79081 Hs.9061 NM_024099 ENSG00000162194 LBHD1 C11orf48 LBH domain containing 1 protein-coding 20161 chr3 132029386 132029554 + 0 NA intron (NM_153429, intron 2 of 16) intron (NM_153429, intron 2 of 16) 5972 NM_130808 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 10471 chr15 75669253 75669357 + 0 NA Intergenic Intergenic 20298 NM_001318146 257364 Hs.8705 NM_153271 ENSG00000173548 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 4477 chr10 119542834 119542887 + 0 NA promoter-TSS (NM_001005339) promoter-TSS (NM_001005339) -150 NM_001005339 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G-protein signaling 10 protein-coding 8277 chr13 50411470 50411639 + 0 NA intron (NR_109974, intron 3 of 6) intron (NR_109974, intron 3 of 6) 115895 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000229323 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 14145 chr19 12722601 12722769 + 0 NA promoter-TSS (NM_013433) promoter-TSS (NM_013433) -37 NM_001136196 30000 Hs.416049 NM_013433 ENSG00000105576 TNPO2 IPO3|KPNB2B|TRN2 transportin 2 protein-coding 14911 chr2 1675697 1675796 + 0 NA intron (NM_012293, intron 8 of 22) intron (NM_012293, intron 8 of 22) 68801 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 30226 chr9 129334270 129334435 + 0 NA Intergenic Intergenic -2571 NR_120685 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 24048 chr6 12288006 12288074 + 0 NA Intergenic Intergenic -2256 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 29867 chr9 111484280 111484455 + 0 NA exon (NM_001080398, exon 2 of 51) exon (NM_001080398, exon 2 of 51) 378 NM_001080398 23392 Hs.368255 NM_001080398 ENSG00000136813 KIAA0368 ECM29 KIAA0368 protein-coding 7499 chr12 98579006 98579110 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -14567 NM_002635 5250 Hs.290404 NM_002635 ENSG00000075415 SLC25A3 OK/SW-cl.48|PHC|PTP solute carrier family 25 member 3 protein-coding 5300 chr11 58770892 58770996 + 0 NA Intergenic HERV1_I-int|LTR|ERV1 -38970 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 11693 chr16 79639988 79640114 + 0 NA Intergenic Intergenic -39326 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 14025 chr19 7830009 7830016 + 0 NA promoter-TSS (NM_145245) promoter-TSS (NM_145245) -263 NM_145245 115704 Hs.26870 NM_145245 ENSG00000142459 EVI5L - ecotropic viral integration site 5 like protein-coding 22663 chr5 67207105 67207239 + 0 NA Intergenic Intergenic -10383 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 20443 chr3 153221858 153221987 + 0 NA Intergenic Intergenic 59710 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 6078 chr11 111927195 111927299 + 0 NA TTS (NM_080659) TTS (NM_080659) 103 NM_001278542 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 30116 chr9 125707179 125707332 + 0 NA promoter-TSS (NM_001006617) promoter-TSS (NM_001006617) -21 NM_001006621 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 4854 chr11 12800244 12800360 + 0 NA intron (NM_021961, intron 3 of 12) MIRc|SINE|MIR 125880 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 16570 chr2 162480212 162480316 + 0 NA intron (NM_173162, intron 5 of 7) intron (NM_173162, intron 5 of 7) 135883 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 671 chr1 39026219 39026344 + 0 NA promoter-TSS (NM_001184979) promoter-TSS (NM_001184979) -14 NM_004552 4725 Hs.632385 NM_004552 ENSG00000168653 NDUFS5 CI-15k|CI15K NADH:ubiquinone oxidoreductase subunit S5 protein-coding 27248 chr7 152676075 152676227 + 0 NA promoter-TSS (NM_005431) promoter-TSS (NM_005431) 14 NM_005431 7516 Hs.647093 NM_005431 ENSG00000196584 XRCC2 FANCU X-ray repair cross complementing 2 protein-coding 25796 chr7 20083964 20084068 + 0 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 56410 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 19597 chr3 58332888 58332977 + 0 NA promoter-TSS (NM_001289095) promoter-TSS (NM_001289095) 42 NM_017771 54899 Hs.190544 NM_017771 ENSG00000168297 PXK MONaKA PX domain containing serine/threonine kinase like protein-coding 5857 chr11 93661632 93661747 + 0 NA promoter-TSS (NM_033395) promoter-TSS (NM_033395) 39 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 29897 chr9 112750627 112750780 + 0 NA promoter-TSS (NM_001012994) promoter-TSS (NM_001012994) -151 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 2423 chr1 203007251 203007379 + 0 NA promoter-TSS (NR_036557) promoter-TSS (NR_036557) -50 NR_036557 100506747 Hs.642024 NR_036557 LOC100506747 - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog pseudo 17524 chr20 5205498 5205579 + 0 NA Intergenic Intergenic 78777 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 19270 chr3 25412411 25412515 + 0 NA intron (NM_001290300, intron 1 of 7) intron (NM_001290300, intron 1 of 7) -15800 NM_001290266 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 30108 chr9 125243409 125243513 + 0 NA Intergenic Intergenic -2074 NM_005347 3309 Hs.743241 NM_005347 ENSG00000044574 HSPA5 BIP|GRP78|HEL-S-89n|MIF2 heat shock protein family A (Hsp70) member 5 protein-coding 21812 chr4 138035001 138035108 + 0 NA intron (NR_037866, intron 8 of 10) intron (NR_037866, intron 8 of 10) -53960 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 4301 chr10 104275064 104275208 + 0 NA promoter-TSS (NM_001191014) promoter-TSS (NM_001191014) 7 NM_001191015 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 24418 chr6 33556981 33557125 + 0 NA Intergenic Intergenic 23240 NM_001188 578 Hs.485139 NM_001188 ENSG00000030110 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2 antagonist/killer 1 protein-coding 17645 chr20 13644142 13644246 + 0 NA Intergenic L1PA15|LINE|L1 -5258 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 14923 chr2 3423978 3424082 + 0 NA intron (NM_001321102, intron 4 of 11) intron (NM_001321102, intron 4 of 11) 44355 NM_016030 51112 Hs.252713 NM_016030 ENSG00000171853 TRAPPC12 CGI-87|TTC-15|TTC15 trafficking protein particle complex 12 protein-coding 5184 chr11 37321006 37321135 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -617531 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 5802 chr11 86632848 86633002 + 0 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 39273 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 4295 chr10 104117855 104117959 + 0 NA Intergenic Intergenic -4151 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 26731 chr7 101608856 101609009 + 0 NA Intergenic Intergenic 20364 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 2276 chr1 193059983 193060112 + 0 NA promoter-TSS (NM_015984) promoter-TSS (NM_015984) 60 NR_037607 51377 Hs.145469 NM_015984 ENSG00000116750 UCHL5 CGI-70|INO80R|UCH-L5|UCH37 ubiquitin C-terminal hydrolase L5 protein-coding 12386 chr17 36486488 36486676 + 0 NA promoter-TSS (NM_001281433) promoter-TSS (NM_001281433) -45 NR_104010 9326 Hs.2210 NM_004773 ENSG00000273611 ZNHIT3 TRIP3 zinc finger HIT-type containing 3 protein-coding 27856 chr8 54632899 54633003 + 0 NA Intergenic Intergenic 16884 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1, axonemal microtubule associated protein-coding 19397 chr3 41131375 41131477 + 0 NA Intergenic Intergenic -67998 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 21298 chr4 38667243 38667325 + 0 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -2656 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 28165 chr8 89801843 89801994 + 0 NA Intergenic LTR8B|LTR|ERV1 44171 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 17302 chr2 233691520 233691668 + 0 NA promoter-TSS (NM_205862) promoter-TSS (NM_205862) -81 NM_205862 54578 Hs.554822 NM_001072 ENSG00000167165 UGT1A6 GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT1|UGT1A6S|UGT1F UDP glucuronosyltransferase family 1 member A6 protein-coding 8444 chr13 94549335 94549439 + 0 NA promoter-TSS (NM_001322185) promoter-TSS (NM_001322185) 26 NM_001322184 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 27329 chr8 6547668 6547827 + 0 NA intron (NM_001147, intron 1 of 8) intron (NM_001147, intron 1 of 8) 15516 NM_001118887 285 Hs.583870 NM_001147 ENSG00000091879 ANGPT2 AGPT2|ANG2 angiopoietin 2 protein-coding 8681 chr14 21192034 21192101 + 0 NA Intergenic MER52A|LTR|ERV1 13436 NR_038970 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 24833 chr6 80106526 80106654 + 0 NA promoter-TSS (NM_000056) promoter-TSS (NM_000056) -20 NR_134945 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 23863 chr6 1311952 1312056 + 0 NA promoter-TSS (NM_033260) promoter-TSS (NM_033260) -436 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 25668 chr7 7968617 7968749 + 0 NA promoter-TSS (NR_110018) promoter-TSS (NR_110018) -60 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 20724 chr3 178303072 178303176 + 0 NA Intergenic Intergenic -116077 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 23126 chr5 124743006 124743093 + 0 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 2063 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 5501 chr11 65915852 65915911 + 0 NA TTS (NM_001135635) TTS (NM_001135635) 3179 NM_031450 83638 Hs.433573 NM_031450 ENSG00000175573 C11orf68 BLES03|P5326 chromosome 11 open reading frame 68 protein-coding 30119 chr9 125932075 125932179 + 0 NA intron (NM_001330782, intron 4 of 7) intron (NM_001330782, intron 4 of 7) 183928 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 26213 chr7 46881854 46882032 + 0 NA Intergenic LTR50|LTR|ERVL -184821 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 19920 chr3 113913037 113913141 + 0 NA intron (NM_001172105, intron 4 of 12) intron (NM_001172105, intron 4 of 12) 15618 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 9368 chr14 74302933 74303097 + 0 NA promoter-TSS (NM_005050) promoter-TSS (NM_005050) 49 NR_003256 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 28944 chr9 15511195 15511299 + 0 NA promoter-TSS (NM_001317898) promoter-TSS (NM_001317898) -228 NM_033222 11168 Hs.658434 NM_021144 ENSG00000164985 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding 21798 chr4 128812064 128812114 + 0 NA intron (NM_001287443, intron 1 of 10) CpG 245 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 13956 chr19 4670332 4670444 + 0 NA promoter-TSS (NM_019107) promoter-TSS (NM_019107) 15 NM_019107 56005 Hs.465645 NM_019107 ENSG00000074842 MYDGF C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20 myeloid derived growth factor protein-coding 20913 chr3 189393052 189393187 + 0 NA Intergenic Intergenic -152525 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 8169 chr13 41311191 41311336 + 0 NA promoter-TSS (NM_001110798) promoter-TSS (NM_001110798) 58 NM_001110798 79612 Hs.512914 NM_018527 ENSG00000172766 NAA16 NARG1L N(alpha)-acetyltransferase 16, NatA auxiliary subunit protein-coding 22521 chr5 53324336 53324506 + 0 NA Intergenic Intergenic -156013 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 7510 chr12 99530104 99530195 + 0 NA intron (NM_152788, intron 9 of 25) intron (NM_152788, intron 9 of 25) -117601 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 11854 chr16 89686527 89686690 + 0 NA promoter-TSS (NM_001160367) promoter-TSS (NM_001160367) -60 NM_001098533 8558 Hs.699177 NM_003674 ENSG00000185324 CDK10 PISSLRE cyclin dependent kinase 10 protein-coding 29512 chr9 90660090 90660262 + 0 NA Intergenic L1PA13|LINE|L1 -17071 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 25950 chr7 29195160 29195165 + 0 NA intron (NM_001293071, intron 1 of 11) CpG 657 NM_001293071 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 18754 chr22 29071523 29071627 + 0 NA Intergenic CpG -1503 NM_032045 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 25615 chr7 6059076 6059230 + 0 NA promoter-TSS (NM_001134335) promoter-TSS (NM_001134335) 76 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 10508 chr15 78873714 78873723 + 0 NA intron (NM_001265604, intron 1 of 11) intron (NM_001265604, intron 1 of 11) 729 NM_001265604 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 19450 chr3 46386349 46386501 + 0 NA intron (NR_125406, intron 2 of 3) intron (NR_125406, intron 2 of 3) 16283 NM_001100168 1234 Hs.450802 NM_000579 ENSG00000160791 CCR5 CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22 C-C motif chemokine receptor 5 (gene/pseudogene) protein-coding 9809 chr15 29925532 29925574 + 0 NA intron (NM_001301025, intron 2 of 28).2 intron (NM_001301025, intron 2 of 28).2 43246 NM_001301025 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 13487 chr18 45167319 45167324 + 0 NA Intergenic Intergenic -45661 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 1465 chr1 109099995 109100244 + 0 NA promoter-TSS (NR_003023) promoter-TSS (NR_003023) -74 NR_003023 677766 Hs.550815 NR_003023 ENSG00000270066 SCARNA2 HBII-382|mgU2-25/61 small Cajal body-specific RNA 2 ncRNA 7366 chr12 87157892 87157996 + 0 NA Intergenic Intergenic -172795 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 2990 chr1 234602876 234602980 + 0 NA Intergenic Intergenic 6597 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 24818 chr6 79234653 79234770 + 0 NA promoter-TSS (NM_001201362) promoter-TSS (NM_001201362) 27 NM_001201363 9324 Hs.77558 NM_004242 ENSG00000118418 HMGN3 PNAS-24|PNAS-25|TRIP7 high mobility group nucleosomal binding domain 3 protein-coding 17184 chr2 224485446 224485620 + 0 NA intron (NM_003590, intron 13 of 15) L1P3|LINE|L1 -83539 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 24028 chr6 10747567 10747671 + 0 NA promoter-TSS (NM_030969) promoter-TSS (NM_030969) -140 NM_001127711 81853 Hs.95600 NM_030969 ENSG00000137210 TMEM14B - transmembrane protein 14B protein-coding 6826 chr12 31272007 31272112 + 0 NA Intergenic Intergenic -52257 NR_026806 79857 Hs.534485 NM_024799 ENSG00000177340 FLJ13224 - uncharacterized LOC79857 ncRNA 14730 chr19 50932138 50932219 + 0 NA Intergenic MIR|SINE|MIR 20910 NM_012427 25818 Hs.50915 NM_012427 ENSG00000167754 KLK5 KLK-L2|KLKL2|SCTE kallikrein related peptidase 5 protein-coding 15025 chr2 11938352 11938456 + 0 NA Intergenic Intergenic -68712 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 27293 chr7 158587742 158587846 + 0 NA promoter-TSS (NM_001308267) promoter-TSS (NM_001308267) 8 NM_130842 5799 Hs.490789 NM_002847 ENSG00000155093 PTPRN2 IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2 protein tyrosine phosphatase, receptor type N2 protein-coding 22525 chr5 53406750 53406877 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -73621 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 4848 chr11 12378148 12378253 + 0 NA intron (NM_018222, intron 1 of 12) CpG 721 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 11727 chr16 81581295 81581430 + 0 NA intron (NM_030629, intron 1 of 20) Tigger3a|DNA|TcMar-Tigger -29986 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 29390 chr9 83817699 83817885 + 0 NA promoter-TSS (NM_001135953) promoter-TSS (NM_001135953) 45 NM_025211 80318 Hs.522255 NM_025211 ENSG00000165113 GKAP1 FKSG21|GKAP42 G kinase anchoring protein 1 protein-coding 13695 chr18 62584431 62584535 + 0 NA non-coding (NR_126534, exon 15 of 15) non-coding (NR_126534, exon 15 of 15) 61058 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 28484 chr8 118065115 118065219 + 0 NA intron (NM_000127, intron 1 of 10) L1PA7|LINE|L1 46652 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 27924 chr8 61139052 61139156 + 0 NA Intergenic CpG -148862 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 CRALBPL|RLBP1L1 clavesin 1 protein-coding 16516 chr2 158458096 158458141 + 0 NA intron (NM_001005476, intron 1 of 20) CpG 1238 NM_001304970 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 1869 chr1 157154957 157155132 + 0 NA Intergenic Intergenic -16453 NM_001145312 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1|bA110J1.4 ETS variant 3 protein-coding 3190 chr10 3467644 3467748 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 149001 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 10868 chr16 1782790 1782896 + 0 NA promoter-TSS (NM_080861) promoter-TSS (NM_080861) -80 NR_104318 10101 Hs.256549 NM_012225 ENSG00000095906 NUBP2 CFD1|NBP 2|NUBP1 nucleotide binding protein 2 protein-coding 6860 chr12 38138752 38138856 + 0 NA Intergenic CpG -177951 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 11551 chr16 69089517 69089584 + 0 NA Intergenic Intergenic -16014 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 23095 chr5 120464221 120464325 + 0 NA promoter-TSS (NM_001300783) promoter-TSS (NM_001300783) -5 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 7096 chr12 54892166 54892333 + 0 NA Intergenic Intergenic 37734 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 13340 chr18 24213046 24213150 + 0 NA intron (NM_018030, intron 3 of 13) intron (NM_018030, intron 3 of 13) 59134 NM_018030 114876 Hs.370725 NM_018030 ENSG00000141447 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein like 1A protein-coding 3481 chr10 27504123 27504285 + 0 NA promoter-TSS (NM_021252) promoter-TSS (NM_021252) 30 NM_001256412 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 4149 chr10 97292554 97292658 + 0 NA promoter-TSS (NM_001204300) promoter-TSS (NM_001204300) 67 NM_032900 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 22574 chr5 57698937 57699041 + 0 NA Intergenic Intergenic 48329 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 12108 chr17 11997379 11997483 + 0 NA promoter-TSS (NM_001303282) promoter-TSS (NM_001303282) -59 NM_144680 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 14651 chr19 48551971 48552080 + 0 NA promoter-TSS (NM_177973) promoter-TSS (NM_177973) -147 NM_177973 6820 Hs.369331 NM_004605 ENSG00000088002 SULT2B1 HSST2 sulfotransferase family 2B member 1 protein-coding 21624 chr4 100093611 100093715 + 0 NA Intergenic Intergenic -96370 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 23490 chr5 149581291 149581422 + 0 NA promoter-TSS (NM_001001669) promoter-TSS (NM_001001669) -216 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 19226 chr3 17233442 17233546 + 0 NA intron (NM_014744, intron 17 of 21) intron (NM_014744, intron 17 of 21) 300298 NR_037465 100500913 NR_037465 ENSG00000154822 MIR3714 - microRNA 3714 ncRNA 5414 chr11 63888463 63888561 + 0 NA promoter-TSS (NM_017490) promoter-TSS (NM_017490) -3 NM_017490 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 4227 chr10 101042801 101042833 + 0 NA Intergenic Intergenic 11578 NM_030971 81855 Hs.283844 NM_030971 ENSG00000107819 SFXN3 BA108L7.2|SFX3 sideroflexin 3 protein-coding 3483 chr10 28284229 28284355 + 0 NA intron (NM_001318170, intron 1 of 16) intron (NM_001318170, intron 1 of 16) -2195 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 1218 chr1 85580602 85580750 + 0 NA promoter-TSS (NM_001554) promoter-TSS (NM_001554) -85 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CYR61 CCN1|GIG1|IGFBP10 cysteine rich angiogenic inducer 61 protein-coding 11866 chr17 410216 410409 + 0 NA promoter-TSS (NM_001013672) promoter-TSS (NM_001013672) -15 NM_001013672 400566 Hs.499607 NM_001013672 ENSG00000187624 C17orf97 CK20|LIAT1 chromosome 17 open reading frame 97 protein-coding 30067 chr9 122828533 122828678 + 0 NA promoter-TSS (NM_005388) promoter-TSS (NM_005388) 51 NM_005388 5082 Hs.271749 NM_005388 ENSG00000136940 PDCL PhLP phosducin like protein-coding 7877 chr12 127163071 127163175 + 0 NA Intergenic L2c|LINE|L2 -102726 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 6743 chr12 25054910 25055014 + 0 NA intron (NM_001204126, intron 1 of 19) intron (NM_001204126, intron 1 of 19) 2715 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 29402 chr9 84759426 84759530 + 0 NA intron (NM_001018064, intron 11 of 16) intron (NM_001018064, intron 11 of 16) 89101 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 259 chr1 17441590 17441678 + 0 NA Intergenic Intergenic -1880 NM_018715 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 30506 chrX 13689007 13689087 + 0 NA promoter-TSS (NM_001195328) promoter-TSS (NM_001195328) -74 NM_001195328 9367 Hs.495704 NM_004251 ENSG00000123595 RAB9A RAB9 RAB9A, member RAS oncogene family protein-coding 28455 chr8 116302144 116302288 + 0 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 22843 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 22780 chr5 79991121 79991167 + 0 NA promoter-TSS (NM_001306212) promoter-TSS (NM_001306212) 121 NM_001167741 345778 Hs.531418 NM_001010891 ENSG00000177034 MTX3 - metaxin 3 protein-coding 7752 chr12 120437934 120438058 + 0 NA promoter-TSS (NM_004373) promoter-TSS (NM_004373) -94 NM_004373 1337 Hs.369624 NM_004373 ENSG00000111775 COX6A1 CMTRID|COX6A|COX6AL cytochrome c oxidase subunit 6A1 protein-coding 6518 chr12 6470677 6470789 + 0 NA non-coding (NR_123717, exon 1 of 4) non-coding (NR_123717, exon 1 of 4) 166 NM_014231 6843 Hs.20021 NM_014231 ENSG00000139190 VAMP1 SPAX1|SYB1|VAMP-1 vesicle associated membrane protein 1 protein-coding 6194 chr11 119381735 119381856 + 0 NA promoter-TSS (NM_001243759) promoter-TSS (NM_001243759) 17 NR_034160 100499227 Hs.662365 NR_034160 USP2-AS1 THY1-AS1 USP2 antisense RNA 1 (head to head) ncRNA 14607 chr19 47048650 47048779 + 0 NA promoter-TSS (NM_017854) promoter-TSS (NM_017854) -90 NM_017854 54958 Hs.105606 NM_017854 ENSG00000130748 TMEM160 - transmembrane protein 160 protein-coding 15094 chr2 17429136 17429290 + 0 NA Intergenic Intergenic 89226 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 23497 chr5 149728440 149728577 + 0 NA Intergenic Intergenic -1744 NM_001172698 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 20365 chr3 149248321 149248425 + 0 NA Intergenic Intergenic -26328 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin protein-coding 26292 chr7 54664513 54664617 + 0 NA Intergenic CpG 94681 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 Sec61 translocon gamma subunit protein-coding 28299 chr8 100426049 100426129 + 0 NA Intergenic Intergenic 43326 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 30301 chr9 132834559 132834636 + 0 NA intron (NM_152572, intron 5 of 12) intron (NM_152572, intron 5 of 12) -43723 NM_001316898 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 6610 chr12 11885294 11885445 + 0 NA intron (NM_001987, intron 6 of 7) intron (NM_001987, intron 6 of 7) -185575 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 9726 chr14 103513010 103513088 + 0 NA Intergenic Intergenic 9810 NM_001823 1152 Hs.173724 NM_001823 ENSG00000166165 CKB B-CK|BCK|CKBB|HEL-211|HEL-S-29 creatine kinase B protein-coding 8138 chr13 39565738 39565871 + 0 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 37415 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFP - lipoma HMGIC fusion partner protein-coding 5160 chr11 35630126 35630189 + 0 NA Intergenic Intergenic 11970 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four jointed box 1 protein-coding 13311 chr18 22913886 22913990 + 0 NA Intergenic Intergenic -19394 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 28812 chr8 143541518 143541635 + 0 NA promoter-TSS (NM_015117) promoter-TSS (NM_015117) -126 NM_015117 23144 Hs.521915 NM_015117 ENSG00000014164 ZC3H3 ZC3HDC3 zinc finger CCCH-type containing 3 protein-coding 17770 chr20 22967208 22967326 + 0 NA Intergenic L1PB1|LINE|L1 -68153 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 23529 chr5 150790414 150790518 + 0 NA intron (NM_032947, intron 1 of 1) intron (NM_032947, intron 1 of 1) 12520 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 26919 chr7 121744525 121744552 + 0 NA Intergenic Intergenic -128567 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase, receptor type Z1 protein-coding 12233 chr17 26939288 26939440 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 149877 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 17494 chr20 3820725 3820841 + 0 NA 5' UTR (NM_001204446, exon 1 of 3) 5' UTR (NM_001204446, exon 1 of 3) 259 NM_018347 55317 Hs.104806 NM_018347 ENSG00000125843 AP5S1 C20orf29 adaptor related protein complex 5 sigma 1 subunit protein-coding 28315 chr8 100908597 100908701 + 0 NA Intergenic MER52A|LTR|ERV1 41922 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 19448 chr3 45995744 45995913 + 0 NA promoter-TSS (NM_024513) promoter-TSS (NM_024513) -4 NM_024513 79443 Hs.200227 NM_024513 ENSG00000163820 FYCO1 CATC2|CTRCT18|RUFY3|ZFYVE7 FYVE and coiled-coil domain containing 1 protein-coding 19133 chr3 9302602 9302803 + 0 NA Intergenic Intergenic -53017 NM_001033117 9901 Hs.654743 NM_014850 ENSG00000196220 SRGAP3 ARHGAP14|MEGAP|SRGAP2|WRP SLIT-ROBO Rho GTPase activating protein 3 protein-coding 3087 chr1 242147206 242147215 + 0 NA intron (NM_152666, intron 6 of 10) L1ME1|LINE|L1 -148127 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 21330 chr4 47836716 47836820 + 0 NA intron (NR_125881, intron 1 of 2) CpG 1338 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 14776 chr19 54133748 54133888 + 0 NA Intergenic (TCCC)n|Simple_repeat|Simple_repeat -3902 NM_014516 4849 Hs.343571 NM_014516 ENSG00000088038 CNOT3 LENG2|NOT3|NOT3H CCR4-NOT transcription complex subunit 3 protein-coding 6208 chr11 120306678 120306798 + 0 NA intron (NM_014352, intron 8 of 12) intron (NM_014352, intron 8 of 12) -18391 NM_174926 219902 Hs.643516 NM_174926 ENSG00000181264 TMEM136 - transmembrane protein 136 protein-coding 442 chr1 27012897 27013020 + 0 NA promoter-TSS (NM_052943) promoter-TSS (NM_052943) -116 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 FAM46B - family with sequence similarity 46 member B protein-coding 8786 chr14 30553774 30553781 + 0 NA Intergenic Intergenic -5346 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 25697 chr7 12801329 12801433 + 0 NA Intergenic Intergenic 114095 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 22619 chr5 62082589 62082790 + 0 NA Intergenic Intergenic -223473 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 5524 chr11 66593082 66593195 + 0 NA promoter-TSS (NM_018219) promoter-TSS (NM_018219) -55 NM_018219 55231 Hs.121072 NM_018219 ENSG00000182791 CCDC87 - coiled-coil domain containing 87 protein-coding 4044 chr10 88880898 88880991 + 0 NA intron (NM_020799, intron 1 of 10) intron (NM_020799, intron 1 of 10) 757 NM_020799 57559 Hs.16229 NM_020799 ENSG00000138134 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein like 1 protein-coding 18269 chr20 54207780 54207903 + 0 NA promoter-TSS (NM_002623) promoter-TSS (NM_002623) -122 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 14567 chr19 45548354 45548458 + 0 NA 3' UTR (NM_025136, exon 2 of 2) 3' UTR (NM_025136, exon 2 of 2) 36458 NM_001017989 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 OPA3, outer mitochondrial membrane lipid metabolism regulator protein-coding 29080 chr9 35669360 35669405 + 0 NA Intergenic Intergenic -4101 NM_032818 84904 Hs.534579 NM_032818 ENSG00000137135 ARHGEF39 C9orf100 Rho guanine nucleotide exchange factor 39 protein-coding 12083 chr17 8383200 8383390 + 0 NA promoter-TSS (NM_000987) promoter-TSS (NM_000987) -48 NM_000987 6154 Hs.482144 NM_000987 ENSG00000161970 RPL26 DBA11|L26 ribosomal protein L26 protein-coding 25964 chr7 30226029 30226183 + 0 NA Intergenic Intergenic -58201 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 25900 chr7 25951221 25951374 + 0 NA Intergenic CpG -1311 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 7375 chr12 88142121 88142266 + 0 NA promoter-TSS (NM_181783) promoter-TSS (NM_181783) 23 NM_025114 80184 Hs.150444 NM_025114 ENSG00000198707 CEP290 3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16 centrosomal protein 290 protein-coding 11672 chr16 77190881 77191012 + 0 NA promoter-TSS (NM_001286639) promoter-TSS (NM_001286639) 27 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 5440 chr11 64437475 64437579 + 0 NA Intergenic Intergenic -11530 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LOC100996455 - uncharacterized LOC100996455 ncRNA 15420 chr2 42169169 42169315 + 0 NA promoter-TSS (NM_019063) promoter-TSS (NM_019063) -96 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 26853 chr7 115087571 115087675 + 0 NA intron (NR_120521, intron 1 of 3) intron (NR_120521, intron 1 of 3) 8665 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 12017 chr17 7014637 7014762 + 0 NA promoter-TSS (NM_001142799) promoter-TSS (NM_001142799) -38 NM_001142798 124944 Hs.511801 NM_174893 ENSG00000258315 C17orf49 BAP18|HEPIS chromosome 17 open reading frame 49 protein-coding 22839 chr5 87268523 87268627 + 0 NA promoter-TSS (NM_022650) promoter-TSS (NM_022650) 322 NM_002890 5921 Hs.664080 NM_002890 ENSG00000145715 RASA1 CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP RAS p21 protein activator 1 protein-coding 19126 chr3 8769435 8769539 + 0 NA 5' UTR (NM_000916, exon 1 of 4) 5' UTR (NM_000916, exon 1 of 4) 127 NM_000916 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 14415 chr19 38374585 38374789 + 0 NA exon (NM_002812, exon 1 of 7) exon (NM_002812, exon 1 of 7) 137 NM_002812 5714 Hs.78466 NM_002812 ENSG00000099341 PSMD8 HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31 proteasome 26S subunit, non-ATPase 8 protein-coding 8408 chr13 79435654 79435754 + 0 NA Intergenic L1MA9|LINE|L1 29395 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 7702 chr12 116910896 116911006 + 0 NA promoter-TSS (NM_012174) promoter-TSS (NM_012174) -5 NM_153348 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 29354 chr9 81125539 81125745 + 0 NA Intergenic MER34B-int|LTR|ERV1 563893 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 transducin like enhancer of split 1 protein-coding 27065 chr7 135707248 135707399 + 0 NA intron (NM_012450, intron 3 of 15) intron (NM_012450, intron 3 of 15) 20881 NM_001318192 26266 Hs.490241 NM_012450 ENSG00000164707 SLC13A4 NAS2|SUT-1|SUT1 solute carrier family 13 member 4 protein-coding 7102 chr12 55717537 55717609 + 0 NA intron (NR_037656, intron 2 of 3) intron (NR_037656, intron 2 of 3) 1281 NR_037656 2647 Hs.94672 NM_001487 ENSG00000135441 BLOC1S1 BLOS1|BORCS1|GCN5L1|MICoA|RT14 biogenesis of lysosomal organelles complex 1 subunit 1 protein-coding 7780 chr12 121686947 121687021 + 0 NA Intergenic CpG -17330 NM_173855 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 23184 chr5 130773916 130774020 + 0 NA Intergenic Intergenic 391380 NR_073488 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 15287 chr2 30072389 30072513 + 0 NA Intergenic Intergenic -74433 NM_001127400 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 16240 chr2 121505123 121505205 + 0 NA intron (NM_001142274, intron 7 of 37) intron (NM_001142274, intron 7 of 37) -25716 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 24699 chr6 52929418 52929522 + 0 NA Intergenic Intergenic -19772 NM_000847 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 6184 chr11 119057327 119057431 + 0 NA promoter-TSS (NM_006389) promoter-TSS (NM_006389) -133 NM_006389 10525 Hs.277704 NM_006389 ENSG00000149428 HYOU1 GRP-170|Grp170|HSP12A|ORP-150|ORP150 hypoxia up-regulated 1 protein-coding 14273 chr19 18557776 18557885 + 0 NA promoter-TSS (NM_001171948) promoter-TSS (NM_001171948) 68 NM_001171948 79036 Hs.714548 NM_024069 ENSG00000105700 KXD1 BORCS4|C19orf50|KXDL|MST096|MSTP096 KxDL motif containing 1 protein-coding 23961 chr6 7201265 7201417 + 0 NA intron (NM_001003700, intron 6 of 11) intron (NM_001003700, intron 6 of 11) 93488 NM_001003699 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 15784 chr2 71452735 71452839 + 0 NA promoter-TSS (NM_001130976) promoter-TSS (NM_001130976) -836 NM_001130981 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 1612 chr1 119731208 119731312 + 0 NA intron (NM_006623, intron 5 of 11) intron (NM_006623, intron 5 of 11) 19464 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 10724 chr15 92804038 92804142 + 0 NA Intergenic Intergenic 8606 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 26943 chr7 123929298 123929370 + 0 NA intron (NM_001174046, intron 1 of 4) MER34-int|LTR|ERV1 3479 NM_001174046 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 26493 chr7 80877151 80877255 + 0 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 42148 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 17758 chr20 22717632 22717736 + 0 NA Intergenic Intergenic -110167 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 2127 chr1 178094058 178094162 + 0 NA promoter-TSS (NR_027982) promoter-TSS (NR_027982) -117 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 8574 chr13 107026095 107026242 + 0 NA Intergenic Intergenic 372288 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 21663 chr4 105399963 105400054 + 0 NA intron (NM_176867, intron 1 of 5) Tigger7|DNA|TcMar-Tigger -47127 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 29316 chr9 78167491 78167645 + 0 NA Intergenic Intergenic -68494 NM_001330693 84131 Hs.374421 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 21100 chr4 781823 781974 + 0 NA promoter-TSS (NR_036511) promoter-TSS (NR_036511) -50 NR_036512 100129917 Hs.731755 NR_036511 ENSG00000249592 LOC100129917 - uncharacterized LOC100129917 ncRNA 11679 chr16 77971637 77971741 + 0 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -50857 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 28367 chr8 103298784 103298961 + 0 NA promoter-TSS (NM_001317796) promoter-TSS (NM_001317796) 41 NM_003506 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 28001 chr8 70608247 70608351 + 0 NA promoter-TSS (NM_001317805) promoter-TSS (NM_001317805) 160 NM_014294 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 30222 chr9 129178254 129178423 + 0 NA promoter-TSS (NM_203434) promoter-TSS (NM_203434) -77 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5 like protein-coding 8142 chr13 39942888 39943030 + 0 NA Intergenic Intergenic -238850 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 9948 chr15 40903989 40904060 + 0 NA TTS (NM_020857) TTS (NM_020857) -2785 NR_135836 105370943 Hs.574244 NR_135836 LOC105370943 - uncharacterized LOC105370943 ncRNA 16651 chr2 171999830 171999942 + 0 NA promoter-TSS (NM_001322278) promoter-TSS (NM_001322278) -11 NR_136276 254042 Hs.298250 NM_199227 ENSG00000172878 METAP1D MAP 1D|MAP1D|MetAP 1D|Metap1l methionyl aminopeptidase type 1D, mitochondrial protein-coding 7436 chr12 93377833 93377979 + 0 NA promoter-TSS (NM_001301022) promoter-TSS (NM_001301022) -17 NM_019094 11163 Hs.506325 NM_019094 ENSG00000173598 NUDT4 DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P nudix hydrolase 4 protein-coding 14517 chr19 44071995 44072139 + 0 NA promoter-TSS (NM_001037813) promoter-TSS (NM_001037813) -77 NM_001037813 342909 Hs.445395 NM_001037813 ENSG00000186026 ZNF284 ZNF284L zinc finger protein 284 protein-coding 971 chr1 60569281 60569424 + 0 NA Intergenic L2c|LINE|L2 256232 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 5605 chr11 70142289 70142393 + 0 NA intron (NR_030691, intron 11 of 24) intron (NR_030691, intron 11 of 24) 56931 NR_030691 55107 Hs.503074 NM_018043 ENSG00000131620 ANO1 DOG1|ORAOV2|TAOS2|TMEM16A anoctamin 1 protein-coding 25821 chr7 21428012 21428127 + 0 NA promoter-TSS (NR_137166) promoter-TSS (NR_137166) 35 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 15447 chr2 43426582 43426706 + 0 NA intron (NR_144316, intron 28 of 36) intron (NR_144316, intron 28 of 36) 169330 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA, armadillo repeat containing protein-coding 16369 chr2 135876424 135876611 + 0 NA promoter-TSS (NM_005915) promoter-TSS (NM_005915) -40 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 23013 chr5 111512650 111512783 + 0 NA promoter-TSS (NM_001308056) promoter-TSS (NM_001308056) -119 NM_001308058 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 13748 chr18 69469542 69469646 + 0 NA promoter-TSS (NR_134579) promoter-TSS (NR_134579) -337 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 7038 chr12 52874377 52874481 + 0 NA Intergenic CpG -25435 NM_173352 196374 Hs.665267 NM_173352 ENSG00000170423 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 28611 chr8 126454227 126454328 + 0 NA Intergenic Intergenic 104189 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 8141 chr13 39836169 39836273 + 0 NA Intergenic Intergenic -172086 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 619 chr1 35931117 35931244 + 0 NA promoter-TSS (NM_177422) promoter-TSS (NM_177422) 98 NM_177422 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute 3, RISC catalytic component protein-coding 23971 chr6 7532322 7532426 + 0 NA Intergenic Intergenic -9201 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 17420 chr20 347657 347761 + 0 NA promoter-TSS (NM_001323685) promoter-TSS (NM_001323685) -196 NM_001323685 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 13207 chr18 839415 839519 + 0 NA Intergenic Intergenic -27141 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 24253 chr6 27177804 27177887 + 0 NA Intergenic CpG 30219 NR_036096 100422934 NR_036096 ENSG00000265565 MIR3143 mir-3143 microRNA 3143 ncRNA 25549 chr7 2242109 2242213 + 0 NA promoter-TSS (NM_198948) promoter-TSS (NM_198948) 37 NM_013393 29960 Hs.279877 NM_013393 ENSG00000122687 MRM2 FJH1|FTSJ2|HEL97|RRMJ2 mitochondrial rRNA methyltransferase 2 protein-coding 25257 chr6 143397530 143397634 + 0 NA Intergenic Intergenic 45095 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase, tRNA specific 2 protein-coding 28746 chr8 134892959 134893002 + 0 NA Intergenic L1MB7|LINE|L1 43045 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 19170 chr3 12484276 12484428 + 0 NA promoter-TSS (NM_001321277) promoter-TSS (NM_001321277) -80 NM_001321278 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 9230 chr14 65356470 65356622 + 0 NA Intergenic Intergenic -21363 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 17821 chr20 25497180 25497284 + 0 NA intron (NM_025176, intron 9 of 23) intron (NM_025176, intron 9 of 23) 88299 NM_001318226 22981 Hs.631508 NM_025176 ENSG00000101004 NINL NLP ninein like protein-coding 10004 chr15 44195313 44195507 + 0 NA promoter-TSS (NM_001286490) promoter-TSS (NM_001286490) -116 NM_001322951 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 10689 chr15 90249438 90249538 + 0 NA promoter-TSS (NR_104604) promoter-TSS (NR_104604) -44 NR_104604 440307 Hs.632164 NM_001029964 ENSG00000213471 TTLL13P TTLL13 tubulin tyrosine ligase like 13, pseudogene pseudo 12817 chr17 62670529 62670633 + 0 NA intron (NM_006039, intron 6 of 29) intron (NM_006039, intron 6 of 29) 43180 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 14188 chr19 14529396 14529584 + 0 NA promoter-TSS (NM_001313964) promoter-TSS (NM_001313964) -53 NR_030369 693224 NR_030369 ENSG00000099797 MIR639 MIRN639|hsa-mir-639 microRNA 639 ncRNA 26684 chr7 99558559 99558615 + 0 NA promoter-TSS (NM_001009958) promoter-TSS (NM_001009958) 165 NM_138494 79027 Hs.599798 NM_024061 ENSG00000197343 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding 3395 chr10 21527210 21527219 + 0 NA Intergenic CpG -1532 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 7620 chr12 108814966 108815062 + 0 NA intron (NM_001161331, intron 4 of 12) L2b|LINE|L2 12537 NM_001161331 54434 Hs.199763 NM_018984 ENSG00000084112 SSH1 SSH1L slingshot protein phosphatase 1 protein-coding 2322 chr1 198669235 198669383 + 0 NA intron (NM_001267798, intron 2 of 3) intron (NM_001267798, intron 2 of 3) 30341 NM_002838 5788 Hs.654514 NM_002838 ENSG00000081237 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type C protein-coding 9372 chr14 74570330 74570484 + 0 NA intron (NM_000428, intron 3 of 35) intron (NM_000428, intron 3 of 35) 41924 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 10528 chr15 80033508 80033515 + 0 NA Intergenic MER81|DNA|hAT-Blackjack -26057 NM_001242917 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 13109 chr17 80833331 80833435 + 0 NA intron (NM_020761, intron 9 of 33) intron (NM_020761, intron 9 of 33) -27751 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 15030 chr2 12177105 12177209 + 0 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) -21973 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 23866 chr6 1336361 1336465 + 0 NA Intergenic Intergenic 23973 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 4778 chr11 8336566 8336670 + 0 NA Intergenic Intergenic -67983 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 9340 chr14 73058371 73058498 + 0 NA promoter-TSS (NM_021239) promoter-TSS (NM_021239) -79 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 10902 chr16 2858675 2858802 + 0 NA promoter-TSS (NM_022119) promoter-TSS (NM_022119) -568 NM_022119 64063 Hs.459709 NM_022119 ENSG00000005001 PRSS22 BSSP-4|SP001LA|hBSSP-4 protease, serine 22 protein-coding 14246 chr19 17511422 17511585 + 0 NA promoter-TSS (NM_012088) promoter-TSS (NM_012088) -120 NM_012088 25796 Hs.466165 NM_012088 ENSG00000130313 PGLS 6PGL|HEL-S-304 6-phosphogluconolactonase protein-coding 15204 chr2 26033942 26034108 + 0 NA 5' UTR (NM_016131, exon 1 of 6) 5' UTR (NM_016131, exon 1 of 6) 165 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 26709 chr7 100626643 100626747 + 0 NA intron (NM_003227, intron 17 of 17) intron (NM_003227, intron 17 of 17) 6955 NM_001206855 7036 Hs.544932 NM_003227 ENSG00000106327 TFR2 HFE3|TFRC2 transferrin receptor 2 protein-coding 9306 chr14 70359617 70359783 + 0 NA promoter-TSS (NM_001204090) promoter-TSS (NM_001204090) 31 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203 COX16, cytochrome c oxidase assembly homolog protein-coding 9488 chr14 85416952 85417056 + 0 NA intron (NR_102737, intron 2 of 2) intron (NR_102737, intron 2 of 2) 23089 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 602 chr1 34852782 34852897 + 0 NA 3' UTR (NM_001164824, exon 3 of 3) 3' UTR (NM_001164824, exon 3 of 3) 6206 NM_001164824 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 15873 chr2 82795597 82795701 + 0 NA Intergenic Intergenic -61154 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 11813 chr16 87392001 87392105 + 0 NA promoter-TSS (NM_001282683) promoter-TSS (NM_001282683) 54 NM_001282683 79791 Hs.567582 NM_024735 ENSG00000103264 FBXO31 FBX14|FBXO14|Fbx31|MRT45|pp2386 F-box protein 31 protein-coding 31027 chrX 120734870 120734980 + 0 NA Intergenic Intergenic -104775 NM_152692 29071 Hs.643920 NM_152692 ENSG00000171155 C1GALT1C1 C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS C1GALT1 specific chaperone 1 protein-coding 23141 chr5 126470685 126470754 + 0 NA intron (NM_001146322, intron 3 of 13) AluSz6|SINE|Alu 5624 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 15075 chr2 15592211 15592350 + 0 NA intron (NM_004939, intron 1 of 25) CpG 659 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 17063 chr2 215137151 215137305 + 0 NA intron (NR_103740, intron 1 of 54) intron (NR_103740, intron 1 of 54) 1200 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 13714 chr18 63604960 63605064 + 0 NA Intergenic Intergenic 17712 NM_012397 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 22796 chr5 81301464 81301622 + 0 NA promoter-TSS (NR_034121) promoter-TSS (NR_034121) 26 NR_034122 100131067 Hs.655855 NR_034121 ENSG00000247572 CKMT2-AS1 - CKMT2 antisense RNA 1 ncRNA 1391 chr1 99457678 99457694 + 0 NA Intergenic Intergenic 30118 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 13528 chr18 48330672 48330776 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) 78698 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 11645 chr16 75245288 75245309 + 0 NA intron (NM_001170715, intron 1 of 6) intron (NM_001170715, intron 1 of 6) 3028 NM_001170719 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 18416 chr21 8228656 8228809 + 0 NA TTS (NR_038958) TTS (NR_038958) 14844 NR_003287 100008589 NR_003287 RNA28S5 RN28S1 RNA, 28S ribosomal 5 rRNA 20212 chr3 135896798 135896902 + 0 NA Intergenic Intergenic -68823 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 2794 chr1 223715431 223715535 + 0 NA intron (NM_001748, intron 1 of 20) intron (NM_001748, intron 1 of 20) 3066 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 5884 chr11 94737430 94737553 + 0 NA intron (NR_135096, intron 1 of 6) MIRb|SINE|MIR 2864 NR_135093 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 10299 chr15 65530453 65530545 + 0 NA promoter-TSS (NM_016395) promoter-TSS (NM_016395) 10 NM_016395 51495 Hs.512973 NM_016395 ENSG00000074696 HACD3 B-IND1|BIND1|HSPC121|PTPLAD1 3-hydroxyacyl-CoA dehydratase 3 protein-coding 13006 chr17 75456519 75456641 + 0 NA 5' UTR (NM_001321149, exon 1 of 32) 5' UTR (NM_001321149, exon 1 of 32) 116 NM_014738 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 KIAA0195 transmembrane protein 94 protein-coding 214 chr1 15795325 15795454 + 0 NA Intergenic LTR37A|LTR|ERV1 12310 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 23085 chr5 119324342 119324446 + 0 NA intron (NM_001286817, intron 2 of 2) intron (NM_001286817, intron 2 of 2) -8781 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 6622 chr12 12787040 12787086 + 0 NA exon (NM_001130415, exon 2 of 2) exon (NM_001130415, exon 2 of 2) 1456 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 10269 chr15 64163184 64163288 + 0 NA promoter-TSS (NM_000942) promoter-TSS (NM_000942) -81 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 8427 chr13 83498623 83498727 + 0 NA Intergenic Intergenic 383718 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 22806 chr5 82183970 82184055 + 0 NA intron (NM_001131028, intron 6 of 8) L1MC5|LINE|L1 94404 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 S23 ribosomal protein S23 protein-coding 19302 chr3 30770592 30770696 + 0 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 124017 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 2789 chr1 223655267 223655371 + 0 NA intron (NM_001143962, intron 1 of 20) intron (NM_001143962, intron 1 of 20) 10415 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 2074 chr1 173062310 173062501 + 0 NA Intergenic Intergenic -11442 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL tumor necrosis factor superfamily member 18 protein-coding 28949 chr9 16337516 16337554 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -61222 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 21992 chr4 168569212 168569363 + 0 NA intron (NM_016081, intron 2 of 20) intron (NM_016081, intron 2 of 20) -62330 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 2547 chr1 209051688 209051792 + 0 NA Intergenic L1PA13|LINE|L1 -273716 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 731 chr1 42206244 42206395 + 0 NA intron (NM_001198850, intron 5 of 12) MLT1J|LTR|ERVL-MaLR -41595 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 12481 chr17 41417668 41417820 + 0 NA Intergenic Intergenic 6826 NM_003770 8688 Hs.673852 NM_003770 ENSG00000108417 KRT37 HA7|K37|KRTHA7 keratin 37 protein-coding 30789 chrX 68416671 68416775 + 0 NA intron (NM_002547, intron 2 of 24) intron (NM_002547, intron 2 of 24) 16734 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 27156 chr7 142956998 142957133 + 0 NA intron (NM_000420, intron 6 of 18).2 L2c|LINE|L2 5351 NM_000420 3792 Hs.368588 NM_000420 ENSG00000197993 KEL CD238|ECE3 Kell blood group, metallo-endopeptidase protein-coding 30453 chrX 3814976 3815080 + 0 NA Intergenic CpG 28866 NR_034031 389906 Hs.636199 NM_001045547 LOC389906 - zinc finger protein 839 pseudogene pseudo 18682 chr22 23145286 23145422 + 0 NA promoter-TSS (NM_004914) promoter-TSS (NM_004914) 28 NM_004914 9609 Hs.353024 NM_004914 ENSG00000100228 RAB36 - RAB36, member RAS oncogene family protein-coding 16964 chr2 205754972 205755080 + 0 NA intron (NM_201279, intron 12 of 15) intron (NM_201279, intron 12 of 15) 72526 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 21109 chr4 1721149 1721269 + 0 NA promoter-TSS (NM_006342) promoter-TSS (NM_006342) 148 NM_138385 92305 Hs.518562 NM_138385 ENSG00000168936 TMEM129 D4S2561E transmembrane protein 129 protein-coding 11347 chr16 53052641 53052790 + 0 NA intron (NR_136518, intron 1 of 2) intron (NR_136518, intron 1 of 2) 158 NR_136518 105371267 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 20211 chr3 135513885 135513948 + 0 NA Intergenic LTR8|LTR|ERV1 -451757 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 17309 chr2 234422426 234422530 + 0 NA Intergenic Intergenic 74571 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 1928 chr1 161118008 161118112 + 0 NA promoter-TSS (NM_012394) promoter-TSS (NM_012394) -12 NM_001185092 4817 Hs.146406 NM_005600 ENSG00000158793 NIT1 - nitrilase 1 protein-coding 19553 chr3 52770949 52771002 + 0 NA promoter-TSS (NM_001193533) promoter-TSS (NM_001193533) -26 NM_001193533 6787 Hs.631921 NM_003157 ENSG00000114904 NEK4 NRK2|STK2|pp12301 NIMA related kinase 4 protein-coding 6396 chr11 133134672 133134776 + 0 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -190956 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 9334 chr14 72801426 72801530 + 0 NA intron (NM_012074, intron 1 of 9) intron (NM_012074, intron 1 of 9) 91171 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 11963 chr17 4679849 4679953 + 0 NA intron (NM_001278241, intron 6 of 18) intron (NM_001278241, intron 6 of 18) -24329 NR_103482 101559451 Hs.634966 NR_103482 ENSG00000244184 LOC101559451 - uncharacterized LOC101559451 ncRNA 14446 chr19 39833662 39833766 + 0 NA TTS (NM_001436) TTS (NM_001436) 519 NM_006483 9149 Hs.130988 NM_004714 ENSG00000105204 DYRK1B AOMS3|MIRK dual specificity tyrosine phosphorylation regulated kinase 1B protein-coding 7086 chr12 54214840 54214988 + 0 NA Intergenic Intergenic 16562 NR_039851 100616400 NR_039851 ENSG00000094916 MIR3198-2 mir-3198-2 microRNA 3198-2 ncRNA 4885 chr11 14337235 14337364 + 0 NA intron (NM_001177314, intron 1 of 5) MER44D|DNA|TcMar-Tigger 21186 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 25187 chr6 135497707 135497885 + 0 NA promoter-TSS (NM_001134830) promoter-TSS (NM_001134830) -5 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 14163 chr19 13747685 13747849 + 0 NA promoter-TSS (NM_001320569) promoter-TSS (NM_001320569) -96 NM_001320569 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 14560 chr19 45485398 45485552 + 0 NA 3' UTR (NM_206901, exon 7 of 7) 3' UTR (NM_206901, exon 7 of 7) 7770 NM_206901 6253 Hs.47517 NM_005619 ENSG00000125744 RTN2 NSP2|NSPL1|NSPLI|SPG12 reticulon 2 protein-coding 9252 chr14 67619668 67619791 + 0 NA promoter-TSS (NM_001172) promoter-TSS (NM_001172) -133 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 15855 chr2 75646723 75646827 + 0 NA promoter-TSS (NM_014763) promoter-TSS (NM_014763) -8 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 28671 chr8 129939911 129939958 + 0 NA promoter-TSS (NM_001256763) promoter-TSS (NM_001256763) -29 NM_001330612 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 26959 chr7 126698498 126698637 + 0 NA intron (NM_000845, intron 6 of 9) intron (NM_000845, intron 6 of 9) 359617 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 17880 chr20 33685804 33685908 + 0 NA intron (NM_005225, intron 1 of 6) CpG 548 NM_005225 1869 Hs.654393 NM_005225 ENSG00000101412 E2F1 E2F-1|RBAP1|RBBP3|RBP3 E2F transcription factor 1 protein-coding 22389 chr5 37371313 37371469 + 0 NA promoter-TSS (NM_004298) promoter-TSS (NM_004298) -265 NM_001278312 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 17842 chr20 31593427 31593571 + 0 NA Intergenic Intergenic -11784 NM_181353 3397 Hs.504609 NM_002165 ENSG00000125968 ID1 ID|bHLHb24 inhibitor of DNA binding 1, HLH protein protein-coding 13891 chr19 2169065 2169196 + 0 NA intron (NM_032482, intron 1 of 27) intron (NM_032482, intron 1 of 27) 4981 NM_032482 84444 Hs.713641 NM_032482 ENSG00000104885 DOT1L DOT1|KMT4 DOT1 like histone lysine methyltransferase protein-coding 24908 chr6 89638435 89638557 + 0 NA promoter-TSS (NR_028493) promoter-TSS (NR_028493) 1 NR_028493 57226 Hs.177275 NM_020466 ENSG00000083099 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 19177 chr3 12967936 12968040 + 0 NA promoter-TSS (NM_014869) promoter-TSS (NM_014869) -290 NM_014869 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 3408 chr10 22428410 22428438 + 0 NA Intergenic Intergenic 9505 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 12306 chr17 30971041 30971071 + 0 NA 5' UTR (NM_197939, exon 1 of 4) 5' UTR (NM_197939, exon 1 of 4) 118 NM_197939 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 27672 chr8 35028889 35028952 + 0 NA Intergenic (ATG)n|Simple_repeat|Simple_repeat -206537 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 4833 chr11 11994011 11994115 + 0 NA intron (NM_001018057, intron 3 of 6) intron (NM_001018057, intron 3 of 6) 14576 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 10138 chr15 55319119 55319243 + 0 NA promoter-TSS (NM_001308423) promoter-TSS (NM_001308423) 13 NM_001308423 101928527 Hs.493512 NM_001308421 ENSG00000225973 PIGBOS1 HP06981 PIGB opposite strand 1 protein-coding 16229 chr2 120252632 120252736 + 0 NA promoter-TSS (NM_002881) promoter-TSS (NM_002881) -154 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 4091 chr10 93445630 93445821 + 0 NA intron (NM_133337, intron 3 of 52) intron (NM_133337, intron 3 of 52) 36592 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 4502 chr10 121002893 121002904 + 0 NA Intergenic Intergenic -151719 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 11130 chr16 23072196 23072223 + 0 NA intron (NM_020718, intron 14 of 15) intron (NM_020718, intron 14 of 15) 77061 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 30983 chrX 115023243 115023347 + 0 NA Intergenic Intergenic -5651 NM_000640 3598 Hs.336046 NM_000640 ENSG00000123496 IL13RA2 CD213A2|CT19|IL-13R|IL13BP interleukin 13 receptor subunit alpha 2 protein-coding 12745 chr17 56982521 56982662 + 0 NA intron (NM_021626, intron 2 of 12) intron (NM_021626, intron 2 of 12) 4484 NM_021626 59342 Hs.514950 NM_021626 ENSG00000121064 SCPEP1 HSCP1|RISC serine carboxypeptidase 1 protein-coding 23627 chr5 159582092 159582160 + 0 NA Intergenic Intergenic -115850 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 9304 chr14 69999327 69999336 + 0 NA intron (NM_022137, intron 7 of 11) intron (NM_022137, intron 7 of 11) 80886 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 4462 chr10 119007047 119007151 + 0 NA Intergenic Intergenic -22617 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 12486 chr17 41549022 41549126 + 0 NA TTS (NR_038442) TTS (NR_038442) 5421 NR_038442 147093 Hs.680576 NR_038442 ENSG00000226629 LINC00974 - long intergenic non-protein coding RNA 974 ncRNA 14094 chr19 10899437 10899469 + 0 NA intron (NM_199141, intron 1 of 15) intron (NM_199141, intron 1 of 15) 27876 NM_199141 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 9025 chr14 54189878 54189982 + 0 NA Intergenic Intergenic -206938 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 7347 chr12 84793655 84793759 + 0 NA Intergenic Intergenic 119122 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 20422 chr3 152268729 152268757 + 0 NA non-coding (NR_027037, exon 2 of 2) non-coding (NR_027037, exon 2 of 2) 275 NM_207292 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 3538 chr10 32347087 32347211 + 0 NA promoter-TSS (NR_104160) promoter-TSS (NR_104160) 69 NR_104160 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 9962 chr15 41791270 41791377 + 0 NA intron (NR_049762, intron 2 of 28) intron (NR_049762, intron 2 of 28) 16889 NR_049761 23005 Hs.513661 NM_014994 ENSG00000137802 MAPKBP1 JNKBP-1|JNKBP1 mitogen-activated protein kinase binding protein 1 protein-coding 29577 chr9 94030709 94030826 + 0 NA promoter-TSS (NM_001253830) promoter-TSS (NM_001253830) -27 NM_177995 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 25003 chr6 109793866 109793970 + 0 NA intron (NM_014845, intron 21 of 22) intron (NM_014845, intron 21 of 22) -40702 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 16252 chr2 121897727 121897785 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR 142211 NR_048557 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 30605 chrX 37349179 37349283 + 0 NA promoter-TSS (NM_001173486) promoter-TSS (NM_001173486) -44 NM_000950 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 25345 chr6 151399798 151399910 + 0 NA Intergenic Intergenic -8154 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 7015 chr12 52037011 52037028 + 0 NA promoter-TSS (NM_001202234) promoter-TSS (NM_001202234) -696 NM_001202234 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 25887 chr7 25093460 25093571 + 0 NA Intergenic MamRep38|DNA|hAT 31846 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 23714 chr5 172111377 172111481 + 0 NA intron (NM_005990, intron 4 of 18) intron (NM_005990, intron 4 of 18) 76913 NM_005990 6793 Hs.744005 NM_005990 ENSG00000072786 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 24122 chr6 17706044 17706148 + 0 NA promoter-TSS (NR_134616) promoter-TSS (NR_134616) -34 NR_134616 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 24851 chr6 82363773 82363841 + 0 NA promoter-TSS (NM_001166392) promoter-TSS (NM_001166392) -437 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 608 chr1 35193170 35193296 + 0 NA promoter-TSS (NR_136702) promoter-TSS (NR_136702) -88 NR_136703 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 10715 chr15 90994684 90994828 + 0 NA promoter-TSS (NM_003981) promoter-TSS (NM_003981) -105 NM_199413 9055 Hs.366401 NM_003981 ENSG00000198901 PRC1 ASE1 protein regulator of cytokinesis 1 protein-coding 13801 chr18 76821915 76821927 + 0 NA promoter-TSS (NM_001306089) promoter-TSS (NM_001306089) 374 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 LOC100131655 - uncharacterized LOC100131655 ncRNA 26692 chr7 100100672 100100707 + 0 NA promoter-TSS (NM_182776) promoter-TSS (NM_182776) 91 NM_182776 4176 Hs.438720 NM_005916 ENSG00000166508 MCM7 CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104 minichromosome maintenance complex component 7 protein-coding 7994 chr13 25753296 25753390 + 0 NA intron (NM_001313741, intron 25 of 35) intron (NM_001313741, intron 25 of 35) 284569 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 22754 chr5 76811341 76811481 + 0 NA Intergenic Intergenic -7566 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 6036 chr11 109696313 109696472 + 0 NA Intergenic L1PA16|LINE|L1 274272 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 12267 chr17 28662134 28662259 + 0 NA promoter-TSS (NM_001320755) promoter-TSS (NM_001320755) -2 NM_003170 6830 Hs.250429 NM_003170 ENSG00000109111 SUPT6H SPT6|SPT6H|emb-5 SPT6 homolog, histone chaperone protein-coding 29608 chr9 95105716 95105820 + 0 NA intron (NM_000136, intron 14 of 14) L1MB4|LINE|L1 -19674 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 13710 chr18 63553204 63553354 + 0 NA Intergenic MIR3|SINE|MIR -2881 NM_080474 89777 Hs.348541 NM_080474 ENSG00000166634 SERPINB12 YUKOPIN serpin family B member 12 protein-coding 11778 chr16 84879952 84880056 + 0 NA intron (NM_031476, intron 12 of 14) intron (NM_031476, intron 12 of 14) 60023 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 21605 chr4 98658682 98658767 + 0 NA promoter-TSS (NM_005723) promoter-TSS (NM_005723) -63 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 28696 chr8 130904640 130904780 + 0 NA intron (NM_001115, intron 6 of 17) Tigger12|DNA|TcMar-Tigger 135879 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 27560 chr8 25000063 25000198 + 0 NA Intergenic CpG -43261 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 26447 chr7 76235332 76235361 + 0 NA intron (NM_001291831, intron 2 of 15) G-rich|Low_complexity|Low_complexity 33453 NM_001291831 222183 Hs.511025 NM_001039212 ENSG00000177679 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 1474 chr1 109274911 109275015 + 0 NA 3' UTR (NM_001408, exon 34 of 34) 3' UTR (NM_001408, exon 34 of 34) 8205 NM_032636 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 11286 chr16 47037832 47037990 + 0 NA Intergenic CpG -64197 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 31213 chrY 11318938 11319090 + 0 NA Intergenic BSR/Beta|Satellite|Satellite 1102576 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 19902 chr3 113019604 113019774 + 0 NA promoter-TSS (NM_001319115) promoter-TSS (NM_001319115) 19 NM_015412 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 44 chr1 2526203 2526356 + 0 NA intron (NM_018216, intron 1 of 18).2 CpG 349 NM_018216 55229 Hs.26156 NM_018216 ENSG00000157881 PANK4 - pantothenate kinase 4 protein-coding 23922 chr6 4135209 4135313 + 0 NA promoter-TSS (NR_103764) promoter-TSS (NR_103764) 207 NM_001166010 10455 Hs.15250 NM_006117 ENSG00000198721 ECI2 ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3 enoyl-CoA delta isomerase 2 protein-coding 2152 chr1 180502300 180502317 + 0 NA 5' UTR (NM_032360, exon 1 of 8) 5' UTR (NM_032360, exon 1 of 8) 579 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 12937 chr17 72008343 72008447 + 0 NA Intergenic Intergenic 17584 NR_110876 102723505 Hs.547482 NR_110876 ENSG00000228639 LINC02095 - long intergenic non-protein coding RNA 2095 ncRNA 7207 chr12 62966525 62966629 + 0 NA Intergenic LTR10F|LTR|ERV1 -31692 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 5016 chr11 24391242 24391346 + 0 NA Intergenic MIRb|SINE|MIR -105676 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 24702 chr6 53064789 53064947 + 0 NA promoter-TSS (NM_033481) promoter-TSS (NM_033481) -130 NM_033481 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 2008 chr1 166952530 166952634 + 0 NA intron (NM_199351, intron 3 of 9) intron (NM_199351, intron 3 of 9) 22742 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 21158 chr4 7972794 7972984 + 0 NA intron (NM_032432, intron 15 of 15) intron (NM_032432, intron 15 of 15) 32492 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 2862 chr1 226778716 226778856 + 0 NA Intergenic MIRc|SINE|MIR -39611 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 10572 chr15 82680490 82680594 + 0 NA exon (NM_004644, exon 8 of 26) exon (NM_004644, exon 8 of 26) 29366 NM_001278512 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 NAPTB adaptor related protein complex 3 beta 2 subunit protein-coding 15105 chr2 17830808 17830912 + 0 NA Intergenic Intergenic 14341 NM_001105569 343930 Hs.705359 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 6504 chr12 6295246 6295346 + 0 NA Intergenic Intergenic -15140 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 18978 chr22 42649423 42649547 + 0 NA promoter-TSS (NM_000398) promoter-TSS (NM_000398) -86 NM_000398 1727 Hs.561064 NM_000398 ENSG00000100243 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 18232 chr20 52847156 52847217 + 0 NA Intergenic Intergenic -125221 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 11048 chr16 14632810 14632832 + 0 NA promoter-TSS (NM_016561) promoter-TSS (NM_016561) 10 NM_016561 51283 Hs.435556 NM_016561 ENSG00000103429 BFAR BAR|RNF47 bifunctional apoptosis regulator protein-coding 2663 chr1 214261664 214261753 + 0 NA Intergenic Intergenic -19514 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 9754 chr14 105300965 105301029 + 0 NA promoter-TSS (NM_001242790) promoter-TSS (NM_001242790) -5 NM_001242788 2972 Hs.424484 NM_001519 ENSG00000185024 BRF1 BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF BRF1, RNA polymerase III transcription initiation factor subunit protein-coding 28050 chr8 76406123 76406227 + 0 NA promoter-TSS (NR_105006) promoter-TSS (NR_105006) -479 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 16593 chr2 164967901 164968022 + 0 NA Intergenic Intergenic -12436 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 8759 chr14 24264443 24264593 + 0 NA Intergenic Intergenic -1308 NM_000359 7051 Hs.508950 NM_000359 ENSG00000092295 TGM1 ARCI1|ICR2|KTG|LI|LI1|TGASE|TGK transglutaminase 1 protein-coding 25675 chr7 11749814 11749918 + 0 NA intron (NM_015204, intron 1 of 26) HERVK22-int|LTR|ERVK 82332 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 8935 chr14 45134524 45134668 + 0 NA promoter-TSS (NM_002013) promoter-TSS (NM_002013) -67 NM_002013 2287 Hs.509226 NM_002013 ENSG00000100442 FKBP3 FKBP-25|FKBP-3|FKBP25|PPIase FK506 binding protein 3 protein-coding 30670 chrX 47541262 47541402 + 0 NA Intergenic Intergenic -19768 NM_001654 369 Hs.446641 NM_001654 ENSG00000078061 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 4690 chr11 2077248 2077352 + 0 NA Intergenic L1ME2|LINE|L1 56909 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 7428 chr12 92929432 92929536 + 0 NA promoter-TSS (NM_003566) promoter-TSS (NM_003566) -153 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 31182 chrX 154398239 154398332 + 0 NA promoter-TSS (NM_001303624) promoter-TSS (NM_001303624) -87 NM_001303624 6134 Hs.534404 NM_006013 ENSG00000147403 RPL10 AUTSX5|DXS648|DXS648E|L10|NOV|QM ribosomal protein L10 protein-coding 22636 chr5 65722137 65722221 + 0 NA promoter-TSS (NM_019072) promoter-TSS (NM_019072) -17 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 9379 chr14 74940299 74940403 + 0 NA Intergenic Intergenic 15413 NM_001293643 5228 Hs.252820 NM_002632 ENSG00000119630 PGF D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760 placental growth factor protein-coding 15546 chr2 53969441 53969545 + 0 NA intron (NM_014614, intron 1 of 46) intron (NM_014614, intron 1 of 46) 1347 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 27893 chr8 58596072 58596213 + 0 NA intron (NM_003580, intron 21 of 30) intron (NM_003580, intron 21 of 30) 42973 NM_005625 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 29053 chr9 34329279 34329417 + 0 NA promoter-TSS (NM_147173) promoter-TSS (NM_147173) -148 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 5368 chr11 62556236 62556381 + 0 NA Intergenic Intergenic 3998 NR_037427 100500804 NR_037427 MIR3654 - microRNA 3654 ncRNA 25620 chr7 6272706 6272834 + 0 NA promoter-TSS (NM_004227) promoter-TSS (NM_004227) -159 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 2934 chr1 230868765 230868787 + 0 NA promoter-TSS (NM_032800) promoter-TSS (NM_032800) -220 NM_032800 84886 Hs.520494 NM_032800 ENSG00000119280 C1orf198 - chromosome 1 open reading frame 198 protein-coding 14872 chr19 58395612 58395690 + 0 NA promoter-TSS (NM_001195135) promoter-TSS (NM_001195135) -439 NM_001195135 646862 Hs.728121 NM_001195135 ENSG00000269855 RNF225 - ring finger protein 225 protein-coding 28551 chr8 122568650 122568770 + 0 NA promoter-TSS (NR_131202) promoter-TSS (NR_131202) -66 NR_131202 105375734 Hs.628341 NR_131202 LOC105375734 - uncharacterized LOC105375734 ncRNA 26544 chr7 87570352 87570456 + 0 NA intron (NM_000927, intron 5 of 28) intron (NM_000927, intron 5 of 28) -58009 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 6088 chr11 112157372 112157538 + 0 NA intron (NM_001562, intron 1 of 5) L2c|LINE|L2 6662 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 20977 chr3 192467431 192467535 + 0 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -47539 NR_046598 100873988 Hs.628012 NR_046598 FGF12-AS3 - FGF12 antisense RNA 3 ncRNA 13130 chr17 81395261 81395353 + 0 NA Intergenic CpG -4414 NM_001291324 57597 Hs.514580 NM_024696 ENSG00000266074 BAHCC1 BAHD2 BAH domain and coiled-coil containing 1 protein-coding 4432 chr10 117168194 117168298 + 0 NA promoter-TSS (NR_037436) promoter-TSS (NR_037436) -472 NR_037436 100500893 NR_037436 ENSG00000266782 MIR3663 - microRNA 3663 ncRNA 10918 chr16 3150542 3150673 + 0 NA TTS (NR_132322) TTS (NR_132322) 6316 NR_132322 197350 Hs.434132 NR_132322 ENSG00000228146 CASP16P CASP16 caspase 16, pseudogene pseudo 16699 chr2 176097734 176097838 + 0 NA Intergenic Intergenic -2016 NM_021193 3238 Hs.450028 NM_021193 ENSG00000170178 HOXD12 HOX4H homeobox D12 protein-coding 8384 chr13 76937547 76937679 + 0 NA Intergenic Intergenic 9162 NR_026983 690 Hs.567241 NR_026983 BTF3P11 BTF3L1|HUMBTFB|OCIF|OPG|TNFRSF11B basic transcription factor 3 pseudogene 11 pseudo 21159 chr4 7978599 7978742 + 0 NA intron (NM_032432, intron 15 of 15) intron (NM_032432, intron 15 of 15) 26711 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 19425 chr3 43769675 43769785 + 0 NA Intergenic Intergenic -78136 NM_001346469 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 26597 chr7 92766705 92766833 + 0 NA intron (NM_001145306, intron 3 of 7) intron (NM_001145306, intron 3 of 7) 67148 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 5722 chr11 79431651 79431755 + 0 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 8948 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 823 chr1 46402212 46402321 + 0 NA intron (NM_001441, intron 2 of 14) intron (NM_001441, intron 2 of 14) 7999 NM_001441 2166 Hs.720143 NM_001441 ENSG00000117480 FAAH FAAH-1|PSAB fatty acid amide hydrolase protein-coding 18692 chr22 23913990 23914165 + 0 NA intron (NR_003082, intron 4 of 4) CpG -15147 NR_038911 284889 Hs.632772 NR_038911 MIF-AS1 MIF-AS MIF antisense RNA 1 ncRNA 9288 chr14 69543848 69543952 + 0 NA Intergenic Intergenic 30983 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 21876 chr4 146241537 146241641 + 0 NA Intergenic Intergenic 65906 NM_007080 11157 Hs.190520 NM_007080 ENSG00000164167 LSM6 YDR378C LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 6360 chr11 130166612 130166727 + 0 NA intron (NM_021978, intron 1 of 18) intron (NM_021978, intron 1 of 18) 6882 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 26767 chr7 105006737 105006884 + 0 NA Intergenic Intergenic 7331 NR_024586 100216545 Hs.631150 NR_024586 KMT2E-AS1 - KMT2E antisense RNA 1 (head to head) ncRNA 19319 chr3 32781606 32781696 + 0 NA Intergenic CpG -36367 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 9886 chr15 37921638 37921650 + 0 NA Intergenic L1PB1|LINE|L1 -12963 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 4666 chr11 576367 576521 + 0 NA promoter-TSS (NR_026967) promoter-TSS (NR_026967) -2 NM_001286581 57661 Hs.325838 NM_020901 ENSG00000070047 PHRF1 PPP1R125|RNF221 PHD and ring finger domains 1 protein-coding 29924 chr9 114398119 114398156 + 0 NA Intergenic CpG -3732 NM_030767 80709 Hs.494895 NM_030767 ENSG00000106948 AKNA - AT-hook transcription factor protein-coding 16914 chr2 200811812 200811916 + 0 NA promoter-TSS (NM_001207069) promoter-TSS (NM_001207069) -38 NM_001321694 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 9159 chr14 61569924 61570043 + 0 NA promoter-TSS (NR_039985) promoter-TSS (NR_039985) 211 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13806 chr18 77089126 77089297 + 0 NA intron (NM_001025100, intron 2 of 3) LTR53|LTR|ERVL 43607 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 15574 chr2 55519542 55519690 + 0 NA promoter-TSS (NM_001282761) promoter-TSS (NM_001282761) 21 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 25638 chr7 6589886 6589917 + 0 NA promoter-TSS (NM_001303039) promoter-TSS (NM_001303039) -120 NM_001303039 79034 Hs.487511 NM_024067 ENSG00000146576 C7orf26 - chromosome 7 open reading frame 26 protein-coding 23378 chr5 141714074 141714216 + 0 NA Intergenic L2c|LINE|L2 -31912 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 7270 chr12 74945825 74945929 + 0 NA Intergenic Intergenic 263871 NM_001260498 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 1797 chr1 154961771 154961865 + 0 NA promoter-TSS (NM_138300) promoter-TSS (NM_138300) -36 NM_138300 90780 Hs.533597 NM_138300 ENSG00000163348 PYGO2 1190004M21Rik pygopus family PHD finger 2 protein-coding 1119 chr1 72000897 72001001 + 0 NA intron (NM_173808, intron 1 of 6) MER61E|LTR|ERV1 -163937 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 3039 chr1 237471009 237471113 + 0 NA promoter-TSS (NR_039626) promoter-TSS (NR_039626) -58 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 12992 chr17 75087671 75087833 + 0 NA promoter-TSS (NM_001271765) promoter-TSS (NM_001271765) 25 NM_001271765 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 11293 chr16 47713271 47713375 + 0 NA Intergenic LTR64|LTR|ERV1 -145258 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 17967 chr20 37358804 37359013 + 0 NA intron (NM_198291, intron 1 of 13) intron (NM_198291, intron 1 of 13) 12780 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 29791 chr9 108049401 108049498 + 0 NA Intergenic Intergenic -559729 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 11708 chr16 81007140 81007270 + 0 NA promoter-TSS (NM_020188) promoter-TSS (NM_020188) -308 NM_020188 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 30846 chrX 77899212 77899359 + 0 NA promoter-TSS (NM_001866) promoter-TSS (NM_001866) -179 NM_001866 1349 Hs.522699 NM_001866 ENSG00000131174 COX7B APLCC|LSDMCA2 cytochrome c oxidase subunit 7B protein-coding 17115 chr2 219217989 219218093 + 0 NA intron (NM_005689, intron 1 of 18) intron (NM_005689, intron 1 of 18) 949 NM_005689 10058 Hs.107911 NM_005689 ENSG00000115657 ABCB6 ABC|ABC14|DUH3|LAN|MCOPCB7|MTABC3|PRP|PSHK2|umat ATP binding cassette subfamily B member 6 (Langereis blood group) protein-coding 9239 chr14 66932656 66932791 + 0 NA intron (NM_020806, intron 8 of 22) L1MA3|LINE|L1 -256670 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 14191 chr19 14572055 14572198 + 0 NA promoter-TSS (NM_004146) promoter-TSS (NM_004146) -49 NM_004146 4713 Hs.532853 NM_004146 ENSG00000099795 NDUFB7 B18|CI-B18 NADH:ubiquinone oxidoreductase subunit B7 protein-coding 6022 chr11 107858825 107858979 + 0 NA 5' UTR (NM_017515, exon 1 of 8) 5' UTR (NM_017515, exon 1 of 8) 286 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 21478 chr4 77862726 77862788 + 0 NA 5' UTR (NM_020236, exon 1 of 9) 5' UTR (NM_020236, exon 1 of 9) 106 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 915 chr1 55039508 55039525 + 0 NA promoter-TSS (NM_174936) promoter-TSS (NM_174936) 40 NM_174936 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 6492 chr12 6093249 6093350 + 0 NA intron (NM_000552, intron 6 of 51) LTR16|LTR|ERVL 31376 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 2978 chr1 233993744 233993895 + 0 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 89107 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 13665 chr18 59864420 59864461 + 0 NA Intergenic Intergenic -35520 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 9370 chr14 74493543 74493686 + 0 NA promoter-TSS (NM_006432) promoter-TSS (NM_006432) -106 NM_001272007 122961 Hs.291079 NM_194279 ENSG00000165898 ISCA2 HBLD1|ISA2|MMDS4|c14_5557 iron-sulfur cluster assembly 2 protein-coding 4037 chr10 88254189 88254326 + 0 NA Intergenic MLT1O|LTR|ERVL-MaLR 329068 NM_018363 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 8316 chr13 60397006 60397017 + 0 NA promoter-TSS (NM_001146070) promoter-TSS (NM_001146070) -282 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 9114 chr14 59306891 59306995 + 0 NA intron (NM_014992, intron 2 of 24) MamRTE1|LINE|RTE-BovB 43502 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 2606 chr1 211515614 211515650 + 0 NA Intergenic CpG -22715 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3 protein-coding 29900 chr9 112793350 112793415 + 0 NA intron (NM_001012994, intron 1 of 8) intron (NM_001012994, intron 1 of 8) 42528 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 30954 chrX 108313143 108313247 + 0 NA intron (NM_033641, intron 2 of 44) intron (NM_033641, intron 2 of 44) 125235 NM_001287760 1288 Hs.145586 NM_001847 ENSG00000197565 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen type IV alpha 6 chain protein-coding 29567 chr9 93098723 93098793 + 0 NA intron (NR_134468, intron 1 of 4) intron (NR_134468, intron 1 of 4) 2635 NR_134467 84270 Hs.434213 NM_032310 ENSG00000165233 CARD19 BinCARD|C9orf89 caspase recruitment domain family member 19 protein-coding 18542 chr21 39183466 39183594 + 0 NA promoter-TSS (NM_001320795) promoter-TSS (NM_001320795) -16 NM_001261824 8624 Hs.473838 NM_003720 ENSG00000183527 PSMG1 C21LRP|DSCR2|LRPC21|PAC-1|PAC1 proteasome assembly chaperone 1 protein-coding 17439 chr20 1225567 1225671 + 0 NA promoter-TSS (NM_001136566) promoter-TSS (NM_001136566) -501 NM_001136566 642636 Hs.713451 NM_001136566 ENSG00000244588 RAD21L1 RAD21L|dJ545L17.2 RAD21 cohesin complex component like 1 protein-coding 29881 chr9 112030154 112030308 + 0 NA Intergenic Intergenic 98131 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 1551 chr1 114670013 114670117 + 0 NA promoter-TSS (NM_001256404) promoter-TSS (NM_001256404) 46 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 27953 chr8 65644610 65644760 + 0 NA promoter-TSS (NM_001145839) promoter-TSS (NM_001145839) 32 NM_014637 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 27784 chr8 48471966 48472041 + 0 NA Intergenic Intergenic -79564 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 9672 chr14 100376379 100376388 + 0 NA promoter-TSS (NM_213645) promoter-TSS (NM_213645) -35 NM_001161476 79446 Hs.497600 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 17855 chr20 31879710 31879844 + 0 NA intron (NM_001008409, intron 2 of 14) CpG -9033 NM_080611 128853 Hs.434108 NM_080611 ENSG00000149599 DUSP15 C20orf57|VHY dual specificity phosphatase 15 protein-coding 30623 chrX 40013336 40013543 + 0 NA Intergenic CpG 84027 NM_017745 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 23100 chr5 121961868 121962018 + 0 NA promoter-TSS (NM_152546) promoter-TSS (NM_152546) -18 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 12445 chr17 39980490 39980594 + 0 NA promoter-TSS (NM_002809) promoter-TSS (NM_002809) -226 NM_002809 5709 Hs.12970 NM_002809 ENSG00000108344 PSMD3 P58|RPN3|S3|TSTA2 proteasome 26S subunit, non-ATPase 3 protein-coding 29281 chr9 76206638 76206742 + 0 NA intron (NM_001190482, intron 20 of 36) intron (NM_001190482, intron 20 of 36) 187838 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 22453 chr5 42759581 42759685 + 0 NA intron (NM_001134848, intron 2 of 8) MER44B|DNA|TcMar-Tigger 2815 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 22163 chr5 2752185 2752283 + 0 NA promoter-TSS (NM_001134222) promoter-TSS (NM_001134222) 103 NR_122125 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 6857 chr12 34022313 34022442 + 0 NA promoter-TSS (NM_032834) promoter-TSS (NM_032834) 96 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 27911 chr8 60455625 60455729 + 0 NA Intergenic L2b|LINE|L2 -41859 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 8188 chr13 43269279 43269481 + 0 NA intron (NM_017993, intron 13 of 16) intron (NM_017993, intron 13 of 16) 156215 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 4607 chr10 128629511 128629615 + 0 NA Intergenic Intergenic 343613 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 12508 chr17 41919180 41919186 + 0 NA promoter-TSS (NM_001303274) promoter-TSS (NM_001303274) -161 NM_001303274 47 Hs.387567 NM_001096 ENSG00000131473 ACLY ACL|ATPCL|CLATP ATP citrate lyase protein-coding 26770 chr7 105013577 105013719 + 0 NA promoter-TSS (NM_182931) promoter-TSS (NM_182931) 493 NR_024586 100216545 Hs.631150 NR_024586 KMT2E-AS1 - KMT2E antisense RNA 1 (head to head) ncRNA 23504 chr5 150000527 150000694 + 0 NA promoter-TSS (NM_001243253) promoter-TSS (NM_001243253) -2 NM_001243253 81789 Hs.169333 NM_030953 ENSG00000164296 TIGD6 - tigger transposable element derived 6 protein-coding 5042 chr11 27209679 27209878 + 0 NA intron (NR_125766, intron 2 of 4) intron (NR_125766, intron 2 of 4) 8990 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 27095 chr7 139243088 139243192 + 0 NA intron (NM_173569, intron 2 of 17) intron (NM_173569, intron 2 of 17) 11655 NM_173569 254048 Hs.153458 NM_173569 ENSG00000157741 UBN2 - ubinuclein 2 protein-coding 17797 chr20 24131431 24131461 + 0 NA Intergenic MER41B|LTR|ERV1 -68321 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 6478 chr12 5085948 5085980 + 0 NA Intergenic Intergenic 42045 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 13846 chr19 984256 984360 + 0 NA promoter-TSS (NM_024100) promoter-TSS (NM_024100) -20 NM_024100 57418 Hs.325321 NM_024100 ENSG00000065268 WDR18 Ipi3|R32184_1 WD repeat domain 18 protein-coding 19207 chr3 15099119 15099221 + 0 NA promoter-TSS (NM_001302378) promoter-TSS (NM_001302378) -13 NR_126155 64145 Hs.475565 NM_022340 ENSG00000131381 RBSN Rabenosyn-5|ZFYVE20 rabenosyn, RAB effector protein-coding 15622 chr2 61144975 61144983 + 0 NA promoter-TSS (NM_001316317) promoter-TSS (NM_001316317) -4 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 2221 chr1 184386914 184387161 + 0 NA promoter-TSS (NM_030806) promoter-TSS (NM_030806) 21 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 2982 chr1 234315376 234315480 + 0 NA intron (NM_001300845, intron 3 of 6) intron (NM_001300845, intron 3 of 6) 8961 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 1307 chr1 92298916 92299063 + 0 NA promoter-TSS (NM_001319683) promoter-TSS (NM_001319683) 20 NR_135089 11146 Hs.49105 NM_007070 ENSG00000174842 GLMN FAP|FAP48|FAP68|FKBPAP|GLML|GVM|VMGLOM glomulin, FKBP associated protein protein-coding 15201 chr2 26008922 26009129 + 0 NA Intergenic Intergenic -24835 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 20505 chr3 157499510 157499681 + 0 NA promoter-TSS (NM_024621) promoter-TSS (NM_024621) 61 NM_024621 79674 Hs.658046 NM_024621 ENSG00000197415 VEPH1 MELT|VEPH ventricular zone expressed PH domain containing 1 protein-coding 14482 chr19 41884226 41884354 + 0 NA promoter-TSS (NM_199002) promoter-TSS (NM_199002) -89 NM_199002 9138 Hs.631550 NM_004706 ENSG00000076928 ARHGEF1 GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5 Rho guanine nucleotide exchange factor 1 protein-coding 1812 chr1 155244601 155244693 + 0 NA 5' UTR (NM_001171811, exon 1 of 10) 5' UTR (NM_001171811, exon 1 of 10) 215 NM_001005741 2629 Hs.282997 NM_000157 ENSG00000177628 GBA GBA1|GCB|GLUC glucosylceramidase beta protein-coding 20413 chr3 151837229 151837382 + 0 NA intron (NR_110202, intron 1 of 3) L4_B_Mam|LINE|RTE-X 23232 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 29712 chr9 101307930 101308062 + 0 NA intron (NM_017753, intron 4 of 7) intron (NM_017753, intron 4 of 7) 75523 NM_001127610 570 Hs.284712 NM_001701 ENSG00000136881 BAAT BACAT|BAT bile acid-CoA:amino acid N-acyltransferase protein-coding 15551 chr2 54115395 54115499 + 0 NA 5' UTR (NM_001320589, exon 1 of 5) 5' UTR (NM_001320589, exon 1 of 5) 174 NM_001320590 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 22139 chr5 458939 459115 + 0 NA intron (NM_007277, intron 6 of 12) intron (NM_007277, intron 6 of 12) 13938 NR_024158 25845 Hs.719132 NR_024158 ENSG00000188242 PP7080 - uncharacterized LOC25845 ncRNA 1875 chr1 158037887 158037991 + 0 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 44666 NM_018240 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 11487 chr16 66977747 66977884 + 0 NA Intergenic Intergenic 10340 NM_001185176 23491 Hs.268700 NM_012122 ENSG00000172828 CES3 ES31 carboxylesterase 3 protein-coding 13940 chr19 4007344 4007391 + 0 NA promoter-TSS (NM_015897) promoter-TSS (NM_015897) -231 NM_015897 51588 Hs.105779 NM_015897 ENSG00000105229 PIAS4 PIAS-gamma|PIASY|Piasg|ZMIZ6 protein inhibitor of activated STAT 4 protein-coding 1673 chr1 150260111 150260185 + 0 NA intron (NM_012113, intron 1 of 10) intron (NM_012113, intron 1 of 10) 2405 NM_012113 23632 Hs.528988 NM_012113 ENSG00000118298 CA14 CAXiV carbonic anhydrase 14 protein-coding 15704 chr2 67256220 67256290 + 0 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) -40936 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 15800 chr2 73071301 73071434 + 0 NA promoter-TSS (NM_001330404) promoter-TSS (NM_001330404) -37 NM_001330403 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC sideroflexin 5 protein-coding 22577 chr5 57825221 57825401 + 0 NA Intergenic MIRb|SINE|MIR 73851 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 30076 chr9 123268622 123268726 + 0 NA promoter-TSS (NM_018387) promoter-TSS (NM_018387) -98 NM_001171137 55342 Hs.287659 NM_018387 ENSG00000165209 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding 24878 chr6 85404795 85404888 + 0 NA promoter-TSS (NR_134633) promoter-TSS (NR_134633) -39 NR_134633 101928820 Hs.587370 NR_134633 ENSG00000234155 LOC101928820 - uncharacterized LOC101928820 ncRNA 15150 chr2 20392144 20392248 + 0 NA Intergenic Intergenic -41346 NM_015317 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 29537 chr9 91795857 91795961 + 0 NA intron (NM_004560, intron 1 of 8) intron (NM_004560, intron 1 of 8) 154253 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 5582 chr11 68460199 68460303 + 0 NA promoter-TSS (NM_001164160) promoter-TSS (NM_001164160) -467 NM_001164163 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 18037 chr20 41618440 41618599 + 0 NA promoter-TSS (NM_032221) promoter-TSS (NM_032221) -25 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 21635 chr4 101693932 101694063 + 0 NA Intergenic Intergenic -96610 NM_017935 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B-cell scaffold protein with ankyrin repeats 1 protein-coding 8003 chr13 26254827 26254916 + 0 NA intron (NM_001260, intron 1 of 12) CpG 767 NM_001260 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 26634 chr7 96085279 96085383 + 0 NA intron (NM_001278422, intron 15 of 15) intron (NM_001278422, intron 15 of 15) 134425 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 6367 chr11 130637284 130637326 + 0 NA Intergenic AluJb|SINE|Alu -29430 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 29012 chr9 27529535 27529608 + 0 NA 5' UTR (NM_024761, exon 1 of 4) 5' UTR (NM_024761, exon 1 of 4) 281 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 25332 chr6 150269934 150270038 + 0 NA Intergenic Intergenic -98906 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 19678 chr3 79937692 79937766 + 0 NA Intergenic Intergenic -169820 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 18747 chr22 28742423 28742548 + 0 NA promoter-TSS (NM_001005735) promoter-TSS (NM_001005735) -195 NM_001318316 150274 Hs.632780 NM_172002 ENSG00000100209 HSCB DNAJC20|HSC20|JAC1 HscB mitochondrial iron-sulfur cluster cochaperone protein-coding 17163 chr2 223041690 223041794 + 0 NA Intergenic Intergenic -10188 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 9166 chr14 61927212 61927316 + 0 NA Intergenic Intergenic -68559 NM_031914 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r|yt14r synaptotagmin 16 protein-coding 26296 chr7 54839656 54839807 + 0 NA Intergenic Intergenic 80418 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 20134 chr3 129663104 129663231 + 0 NA intron (NM_001128224, intron 4 of 5) intron (NM_001128224, intron 4 of 5) 25565 NR_033361 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 17576 chr20 10419678 10419782 + 0 NA intron (NM_170784, intron 2 of 5) MER44B|DNA|TcMar-Tigger 12195 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 13474 chr18 44149814 44149918 + 0 NA Intergenic Intergenic 381831 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 12861 chr17 65064520 65064659 + 0 NA Intergenic Intergenic -7787 NM_006572 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 7721 chr12 118103935 118104068 + 0 NA promoter-TSS (NM_019086) promoter-TSS (NM_019086) 4 NM_019086 54621 Hs.187624 NM_019086 ENSG00000176834 VSIG10 - V-set and immunoglobulin domain containing 10 protein-coding 22551 chr5 55668458 55668562 + 0 NA intron (NM_173514, intron 7 of 15) FLAM_A|SINE|Alu 24543 NR_047649 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 21843 chr4 141636966 141637070 + 0 NA non-coding (NR_037840, exon 1 of 8) non-coding (NR_037840, exon 1 of 8) 422 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 31143 chrX 150689240 150689325 + 0 NA Intergenic LTR40A1|LTR|ERVL -4082 NM_001306144 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 23218 chr5 132496248 132496352 + 0 NA Intergenic Intergenic -5527 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 26971 chr7 128198162 128198266 + 0 NA Intergenic Intergenic -9658 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 13916 chr19 3035688 3035842 + 0 NA intron (NM_001144761, intron 2 of 19) CpG -6151 NM_001144762 7089 Hs.332173 NM_003260 ENSG00000065717 TLE2 ESG|ESG2|GRG2 transducin like enhancer of split 2 protein-coding 11567 chr16 69754827 69754980 + 0 NA promoter-TSS (NM_014062) promoter-TSS (NM_014062) 65 NR_074074 28987 Hs.271695 NM_014062 ENSG00000141101 NOB1 ART-4|MST158|MSTP158|NOB1P|PSMD8BP1 NIN1/PSMD8 binding protein 1 homolog protein-coding 6244 chr11 122781536 122781667 + 0 NA intron (NM_032873, intron 4 of 13) intron (NM_032873, intron 4 of 13) -56897 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T-cell molecule protein-coding 9718 chr14 103158823 103158955 + 0 NA Intergenic MER4B|LTR|ERV1 30139 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 29736 chr9 105157256 105157360 + 0 NA Intergenic Intergenic -87297 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 18241 chr20 53077601 53077705 + 0 NA intron (NM_173485, intron 1 of 2) L2c|LINE|L2 105246 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 2542 chr1 208238923 208239027 + 0 NA intron (NM_025179, intron 1 of 31) intron (NM_025179, intron 1 of 31) 5345 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 6001 chr11 105937529 105937633 + 0 NA intron (NM_000829, intron 14 of 16) intron (NM_000829, intron 14 of 16) 84706 NM_001318750 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 9613 chr14 95483318 95483422 + 0 NA Intergenic Intergenic -7534 NM_152592 161176 Hs.41502 NM_024633 ENSG00000176438 SYNE3 C14orf139|C14orf49|LINC00341|NCRNA00341|NET53|Nesp3 spectrin repeat containing nuclear envelope family member 3 protein-coding 25845 chr7 22854200 22854352 + 0 NA Intergenic CpG -2337 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 21672 chr4 106316246 106316263 + 0 NA promoter-TSS (NM_001163435) promoter-TSS (NM_001163435) 12 NM_001163437 93627 Hs.151498 NM_033115 ENSG00000145348 TBCK HSPC302|IHPRF3|TBCKL TBC1 domain containing kinase protein-coding 6289 chr11 125625668 125625759 + 0 NA promoter-TSS (NR_045205) promoter-TSS (NR_045205) 289 NM_001330427 1111 Hs.24529 NM_001274 ENSG00000149554 CHEK1 CHK1 checkpoint kinase 1 protein-coding 10439 chr15 74397062 74397252 + 0 NA Intergenic Intergenic 14275 NR_106941 102465530 NR_106941 ENSG00000277391 MIR6881 hsa-mir-6881 microRNA 6881 ncRNA 27844 chr8 53886033 53886113 + 0 NA intron (NR_104579, intron 1 of 3) intron (NR_104579, intron 1 of 3) 5201 NM_003702 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G-protein signaling 20 protein-coding 10119 chr15 52528830 52528965 + 0 NA 5' UTR (NM_001142495, exon 1 of 40) 5' UTR (NM_001142495, exon 1 of 40) 153 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 22934 chr5 96935931 96936069 + 0 NA 5' UTR (NM_005575, exon 1 of 18) 5' UTR (NM_005575, exon 1 of 18) 358 NM_005575 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 28797 chr8 142952338 142952442 + 0 NA Intergenic Intergenic -34547 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 8715 chr14 22979307 22979403 + 0 NA intron (NM_001289097, intron 1 of 1) intron (NM_001289097, intron 1 of 1) -2132 NM_198086 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding 22134 chr5 47459 47575 + 0 NA Intergenic Intergenic -92741 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 17483 chr20 3408794 3408926 + 0 NA Intergenic Intergenic -1198 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 1524 chr1 112522761 112522865 + 0 NA TTS (NM_001308264) TTS (NM_001308264) 14065 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 28929 chr9 13750296 13750400 + 0 NA Intergenic Intergenic -177623 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 6652 chr12 13339761 13339855 + 0 NA Intergenic Intergenic 36937 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 19365 chr3 38496288 38496311 + 0 NA promoter-TSS (NR_134938) promoter-TSS (NR_134938) 27 NM_001145464 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 5142 chr11 34640405 34640528 + 0 NA intron (NM_001206616, intron 1 of 8) intron (NM_001206616, intron 1 of 8) 8002 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 2360 chr1 201170783 201170963 + 0 NA intron (NM_001288564, intron 1 of 5) CpG 709 NM_001288564 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 11804 chr16 86718305 86718409 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 3602 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LOC101928614 - uncharacterized LOC101928614 ncRNA 31122 chrX 144801923 144802027 + 0 NA Intergenic MLT1N2|LTR|ERVL-MaLR -445612 NM_001009614 494118 Hs.551270 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 2403 chr1 202119009 202119171 + 0 NA Intergenic Intergenic -3811 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 15251 chr2 27890547 27890680 + 0 NA promoter-TSS (NM_001287580) promoter-TSS (NM_001287580) -2 NM_199194 9577 Hs.258314 NM_004899 ENSG00000158019 BRE BRCC4|BRCC45 brain and reproductive organ-expressed (TNFRSF1A modulator) protein-coding 29574 chr9 93566639 93566789 + 0 NA TTS (NM_001286722) TTS (NM_001286722) -9913 NM_005392 5253 Hs.211441 NM_005392 ENSG00000197724 PHF2 CENP-35|GRC5|JHDM1E|KDM7C PHD finger protein 2 protein-coding 27306 chr8 274576 274680 + 0 NA Intergenic Intergenic 42078 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 21543 chr4 85796723 85796827 + 0 NA intron (NM_001042669, intron 1 of 7) LTR41|LTR|ERVL 18077 NM_001346093 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 10042 chr15 47824287 47824446 + 0 NA intron (NR_120336, intron 3 of 4) intron (NR_120336, intron 3 of 4) 21870 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 12621 chr17 48048097 48048235 + 0 NA promoter-TSS (NM_001330262) promoter-TSS (NM_001330262) -139 NM_001330261 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 16142 chr2 112229517 112229662 + 0 NA intron (NM_032494, intron 8 of 8) MLT1H2|LTR|ERVL-MaLR 25498 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 13729 chr18 65660137 65660184 + 0 NA Intergenic L2a|LINE|L2 -90092 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 2261 chr1 190679131 190679235 + 0 NA intron (NR_033922, intron 1 of 4) AluJo|SINE|Alu 54293 NR_033922 440704 Hs.518802 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 11033 chr16 12803764 12803892 + 0 NA promoter-TSS (NM_001099455) promoter-TSS (NM_001099455) 59 NM_018340 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 9014 chr14 52791479 52791633 + 0 NA 5' UTR (NM_198066, exon 1 of 6) 5' UTR (NM_198066, exon 1 of 6) 112 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 6324 chr11 128507169 128507345 + 0 NA intron (NM_001143820, intron 3 of 9) G-rich|Low_complexity|Low_complexity 15053 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 9555 chr14 91120156 91120260 + 0 NA intron (NM_001286471, intron 1 of 13) L2|LINE|L2 5508 NM_001286471 80017 Hs.309849 NM_024952 ENSG00000133943 C14orf159 - chromosome 14 open reading frame 159 protein-coding 11871 chr17 714795 714963 + 0 NA promoter-TSS (NM_001128159) promoter-TSS (NM_001128159) -23 NM_018289 55275 Hs.461819 NM_018289 ENSG00000141252 VPS53 HCCS1|PCH2E|hVps53L|pp13624 VPS53, GARP complex subunit protein-coding 23851 chr6 188891 189014 + 0 NA intron (NR_126020, intron 3 of 7) intron (NR_126020, intron 3 of 7) 16532 NR_126020 285766 Hs.657946 NR_126020 ENSG00000263667 LOC285766 - uncharacterized LOC285766 ncRNA 9776 chr14_GL000225v1_random 133665 133819 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 12097 chr17 10086192 10086346 + 0 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) -49522 NM_201432 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 MLL/GAS7 growth arrest specific 7 protein-coding 13193 chr17_KI270729v1_random 50570 50674 + 0 NA NA (GAATG)n|Satellite|Satellite NA NA 22894 chr5 93677449 93677536 + 0 NA intron (NR_028080, intron 8 of 8) intron (NR_028080, intron 8 of 8) -56704 NR_031754 100313887 NR_031754 ENSG00000113391 MIR2277 mir-2277 microRNA 2277 ncRNA 31129 chrX 149453132 149453236 + 0 NA Intergenic Intergenic 52170 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 27520 chr8 22715851 22715955 + 0 NA intron (NM_144962, intron 6 of 6) intron (NM_144962, intron 6 of 6) -22601 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 23737 chr5 172959308 172959499 + 0 NA promoter-TSS (NR_026683) promoter-TSS (NR_026683) -21 NM_016093 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 14643 chr19 48363202 48363344 + 0 NA intron (NM_018273, intron 2 of 7) CpG 964 NM_001303539 55260 Hs.351335 NM_018273 ENSG00000161558 TMEM143 - transmembrane protein 143 protein-coding 23135 chr5 125669044 125669148 + 0 NA Intergenic Intergenic 175835 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 25406 chr6 157763466 157763680 + 0 NA Intergenic Intergenic -59598 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 25763 chr7 17600343 17600497 + 0 NA Intergenic Intergenic -41511 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 26106 chr7 40899310 40899440 + 0 NA Intergenic Intergenic 80564 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 25523 chr7 726586 726724 + 0 NA promoter-TSS (NM_017802) promoter-TSS (NM_017802) -46 NM_017802 54919 Hs.535896 NM_017802 ENSG00000164818 DNAAF5 CILD18|HEATR2 dynein axonemal assembly factor 5 protein-coding 11773 chr16 84618973 84619094 + 0 NA promoter-TSS (NM_021149) promoter-TSS (NM_021149) -937 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 30282 chr9 131678646 131678765 + 0 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 31137 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 14990 chr2 10289940 10290004 + 0 NA Intergenic LTR16|LTR|ERVL -12932 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 17765 chr20 22794389 22794529 + 0 NA Intergenic L2b|LINE|L2 -186942 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 7206 chr12 62935225 62935329 + 0 NA promoter-TSS (NM_020700) promoter-TSS (NM_020700) -392 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 5138 chr11 34570749 34570839 + 0 NA Intergenic L1MD2|LINE|L1 -50247 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 2913 chr1 229268487 229268591 + 0 NA Intergenic Intergenic -2523 NM_001271998 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 29222 chr9 72579289 72579443 + 0 NA intron (NM_138691, intron 2 of 23) intron (NM_138691, intron 2 of 23) 57565 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 24362 chr6 31546795 31546950 + 0 NA promoter-TSS (NM_138282).4 promoter-TSS (NM_138282).4 21 NM_001144963 4795 Hs.2764 NM_005007 ENSG00000204498 NFKBIL1 IKBL|LST1|NFKBIL NFKB inhibitor like 1 protein-coding 17203 chr2 226426644 226426688 + 0 NA Intergenic Charlie20a|DNA|hAT-Charlie 232127 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 30477 chrX 9907058 9907210 + 0 NA intron (NM_001649, intron 5 of 9) intron (NM_001649, intron 5 of 9) -5238 NM_001320664 357 Hs.567236 NM_001649 ENSG00000146950 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 8897 chr14 36982295 36982399 + 0 NA intron (NM_030631, intron 1 of 9) intron (NM_030631, intron 1 of 9) -29956 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 11322 chr16 50065819 50065923 + 0 NA promoter-TSS (NM_182922) promoter-TSS (NM_182922) -70 NR_138092 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 15670 chr2 64807581 64807685 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR 55998 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 18524 chr21 37366625 37366775 + 0 NA promoter-TSS (NM_101395) promoter-TSS (NM_101395) -234 NM_001347721 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 10910 chr16 2911739 2911892 + 0 NA promoter-TSS (NM_020912) promoter-TSS (NM_020912) -164 NM_032296 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 27606 chr8 27774372 27774442 + 0 NA promoter-TSS (NM_001017420) promoter-TSS (NM_001017420) -134 NM_001017420 157570 Hs.99480 NM_001017420 ENSG00000171320 ESCO2 2410004I17Rik|EFO2|RBS establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 5985 chr11 103546402 103546506 + 0 NA Intergenic Intergenic -303452 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 1896 chr1 159854749 159854895 + 0 NA exon (NM_001134233, exon 2 of 6) exon (NM_001134233, exon 2 of 6) 525 NM_001134233 284677 Hs.647718 NM_001134233 ENSG00000188004 C1orf204 - chromosome 1 open reading frame 204 protein-coding 1042 chr1 65177588 65177692 + 0 NA intron (NM_001330616, intron 1 of 4) intron (NM_001330616, intron 1 of 4) 28637 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 9028 chr14 54312281 54312418 + 0 NA Intergenic Intergenic -84519 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 29120 chr9 65389802 65389956 + 0 NA Intergenic SST1|Satellite|centr -104670 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 24511 chr6 38771265 38771369 + 0 NA intron (NM_001206927, intron 12 of 92) intron (NM_001206927, intron 12 of 92) 55976 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 13365 chr18 27844159 27844210 + 0 NA Intergenic Intergenic 192401 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 29823 chr9 109107433 109107537 + 0 NA intron (NM_032012, intron 2 of 17) intron (NM_032012, intron 2 of 17) 12460 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 24095 chr6 15245848 15245989 + 0 NA promoter-TSS (NM_004973) promoter-TSS (NM_004973) -57 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 7693 chr12 115917254 115917408 + 0 NA Intergenic CpG 231323 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 13619 chr18 55589787 55589976 + 0 NA promoter-TSS (NM_001243227) promoter-TSS (NM_001243227) -67 NM_001243228 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 1169 chr1 81699347 81699466 + 0 NA promoter-TSS (NM_001297704) promoter-TSS (NM_001297704) -364 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 26061 chr7 36527033 36527156 + 0 NA intron (NM_001637, intron 19 of 20) intron (NM_001637, intron 19 of 20) 73026 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 16170 chr2 113164702 113164806 + 0 NA Intergenic Intergenic -9229 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 18955 chr22 41448515 41448517 + 0 NA Intergenic Intergenic -1493 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 17046 chr2 212906052 212906156 + 0 NA Intergenic Intergenic -20153 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 3816 chr10 69180184 69180288 + 0 NA promoter-TSS (NM_001301683) promoter-TSS (NM_001301683) 32 NM_001323588 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 118 chr1 8703321 8703403 + 0 NA intron (NM_001042681, intron 1 of 22) CpG 114278 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 8516 chr13 101454047 101454194 + 0 NA intron (NM_001271755, intron 2 of 9) CpG-6807 1527 NM_001271755 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 10157 chr15 56805927 56806031 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger -71893 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 4872 chr11 13463218 13463327 + 0 NA promoter-TSS (NM_032320) promoter-TSS (NM_032320) 25 NM_032320 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 24159 chr6 19839108 19839248 + 0 NA intron (NM_001546, intron 2 of 2) intron (NM_001546, intron 2 of 2) 1808 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 23384 chr5 141879397 141879414 + 0 NA promoter-TSS (NM_032420) promoter-TSS (NM_032420) -995 NM_032420 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 21871 chr4 145808225 145808260 + 0 NA intron (NM_001306215, intron 8 of 14) intron (NM_001306215, intron 8 of 14) 128038 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 20732 chr3 179037481 179037585 + 0 NA intron (NM_152240, intron 3 of 6) LTR27E|LTR|ERV1 34335 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 18795 chr22 30968998 30969102 + 0 NA promoter-TSS (NM_001303256) promoter-TSS (NM_001303256) -161 NR_110493 55000 Hs.554829 NR_002323 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 (non-protein coding) ncRNA 1659 chr1 147833333 147833447 + 0 NA Intergenic L1PB1|LINE|L1 -60028 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 767 chr1 43707360 43707511 + 0 NA promoter-TSS (NR_073017) promoter-TSS (NR_073017) -94 NR_033827 100132774 Hs.655569 NR_033827 KDM4A-AS1 - KDM4A antisense RNA 1 ncRNA 30348 chr9 135972053 135972207 + 0 NA Intergenic Intergenic -10750 NM_016172 10422 Hs.9194 NM_016172 ENSG00000130560 UBAC1 GBDR1|KPC2|UBADC1 UBA domain containing 1 protein-coding 6638 chr12 13085430 13085438 + 0 NA intron (NM_001206842, intron 5 of 5) intron (NM_001206842, intron 5 of 5) 10372 NM_031289 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 805 chr1 45686548 45686613 + 0 NA promoter-TSS (NM_021639) promoter-TSS (NM_021639) 50 NM_021639 60313 Hs.238432 NM_021639 ENSG00000159592 GPBP1L1 SP192 GC-rich promoter binding protein 1 like 1 protein-coding 5707 chr11 77994741 77995021 + 0 NA promoter-TSS (NM_033547) promoter-TSS (NM_033547) -210 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 194 chr1 14138176 14138374 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR 388894 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 3503 chr10 29807549 29807742 + 0 NA Intergenic Intergenic -70644 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 6501 chr12 6273019 6273154 + 0 NA Intergenic AluJo|SINE|Alu -37350 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 30338 chr9 134443515 134443669 + 0 NA Intergenic Intergenic 37010 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 30425 chrUn_KI270442v1 384728 384832 + 0 NA NA LSAU|Satellite|Satellite NA NA 30752 chrX 54530129 54530307 + 0 NA promoter-TSS (NM_001184819) promoter-TSS (NM_001184819) 7 NM_019067 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 2395 chr1 202029265 202029419 + 0 NA Intergenic L2c|LINE|L2 18780 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 14113 chr19 11374954 11375150 + 0 NA intron (NM_175871, intron 1 of 1) CpG 345 NM_175871 126074 Hs.631619 NM_175871 ENSG00000173928 SWSAP1 C19orf39|SWS1AP1|ZSWIM7AP1 SWIM-type zinc finger 7 associated protein 1 protein-coding 10759 chr15 94792316 94792474 + 0 NA Intergenic MIRc|SINE|MIR -62968 NR_077061 440311 Hs.745156 NR_077061 ENSG00000260521 LOC440311 - glioma tumor suppressor candidate region gene 2 pseudogene pseudo 18172 chr20 49936602 49936706 + 0 NA intron (NM_018683, intron 1 of 5) CpG 277 NM_018683 55905 Hs.144949 NM_018683 ENSG00000124226 RNF114 PSORS12|ZNF313 ring finger protein 114 protein-coding 21099 chr4 705556 705682 + 0 NA promoter-TSS (NM_001317836) promoter-TSS (NM_001317836) -122 NM_001317836 10336 Hs.144309 NM_006315 ENSG00000185619 PCGF3 DONG1|RNF3|RNF3A polycomb group ring finger 3 protein-coding 24687 chr6 52403825 52403968 + 0 NA exon (NM_133367, exon 2 of 2) exon (NM_133367, exon 2 of 2) -16300 NM_018100 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 16577 chr2 163736173 163736173 + 0 NA promoter-TSS (NM_001321825) promoter-TSS (NM_001321825) -166 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 5797 chr11 86484309 86484478 + 0 NA intron (NM_001014811, intron 6 of 13) intron (NM_001014811, intron 6 of 13) 109657 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 8905 chr14 37580278 37580395 + 0 NA Intergenic Intergenic 14784 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 12924 chr17 71402660 71402764 + 0 NA Intergenic Intergenic -200533 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 14747 chr19 51726122 51726243 + 0 NA Intergenic Intergenic -2190 NM_001297436 3036 Hs.57697 NM_001523 ENSG00000105509 HAS1 HAS hyaluronan synthase 1 protein-coding 12136 chr17 16329711 16329815 + 0 NA Intergenic Intergenic 23735 NM_181716 201161 Hs.433422 NM_181716 ENSG00000166582 CENPV 3110013H01Rik|CENP-V|PRR6|p30 centromere protein V protein-coding 10592 chr15 83850979 83851088 + 0 NA intron (NM_207517, intron 7 of 29) MER5A|DNA|hAT-Charlie 196947 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 21996 chr4 169010238 169010396 + 0 NA promoter-TSS (NM_032783) promoter-TSS (NM_032783) 0 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 13623 chr18 56651129 56651322 + 0 NA promoter-TSS (NM_015285) promoter-TSS (NM_015285) -160 NM_015285 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 17021 chr2 209473974 209474098 + 0 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 49989 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 6119 chr11 115504390 115504521 + 0 NA promoter-TSS (NM_001301043) promoter-TSS (NM_001301043) 68 NM_014333 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 5955 chr11 101618807 101618911 + 0 NA Intergenic MER41G|LTR|ERV1 -34931 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 2160 chr1 181033226 181033330 + 0 NA promoter-TSS (NM_001194999) promoter-TSS (NM_001194999) -147 NM_001195035 3140 Hs.13500 NM_001531 ENSG00000153029 MR1 HLALS major histocompatibility complex, class I-related protein-coding 29795 chr9 108156670 108156774 + 0 NA Intergenic Intergenic -667002 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 5228 chr11 46121391 46121536 + 0 NA promoter-TSS (NM_001101802) promoter-TSS (NM_001101802) -29 NM_016621 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 3785 chr10 63712328 63712515 + 0 NA Intergenic Intergenic -190346 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 14713 chr19 50147998 50148079 + 0 NA Intergenic CpG -7718 NR_024243 100170227 Hs.717309 NR_024243 SNAR-D - small ILF3/NF90-associated RNA D snRNA 24707 chr6 53326710 53326767 + 0 NA intron (NM_001242831, intron 1 of 2) intron (NM_001242831, intron 1 of 2) 10879 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 8089 chr13 33262276 33262375 + 0 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -15229 NR_046693 100874241 Hs.662433 NR_046693 ENSG00000236581 STARD13-AS STARD13-AS2 STARD13 antisense RNA ncRNA 10967 chr16 4937280 4937388 + 0 NA promoter-TSS (NM_002705) promoter-TSS (NM_002705) -199 NM_002705 5493 Hs.192233 NM_002705 ENSG00000118898 PPL - periplakin protein-coding 20245 chr3 138594757 138594889 + 0 NA promoter-TSS (NM_001320598) promoter-TSS (NM_001320598) -440 NM_001320598 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 6639 chr12 13098341 13098445 + 0 NA intron (NM_001206842, intron 1 of 5) intron (NM_001206842, intron 1 of 5) -2587 NM_001206845 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 5677 chr11 75143189 75143293 + 0 NA Intergenic Intergenic -7746 NM_001145212 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 24194 chr6 24646947 24647051 + 0 NA promoter-TSS (NM_001168375) promoter-TSS (NM_001168375) -844 NM_014809 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 DYLX2|DYX2|NMIG KIAA0319 protein-coding 8122 chr13 37715720 37715731 + 0 NA intron (NM_001135958, intron 2 of 9) intron (NM_001135958, intron 2 of 9) -116881 NM_001286667 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 527 chr1 31563095 31563234 + 0 NA Intergenic MER41B|LTR|ERV1 -13321 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 11158 chr16 24994398 24994502 + 0 NA intron (NM_018054, intron 1 of 18) intron (NM_018054, intron 1 of 18) 20928 NM_001006634 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 25416 chr6 158644840 158644870 + 0 NA promoter-TSS (NM_001291602) promoter-TSS (NM_001291602) -69 NM_001291602 6993 Hs.445999 NM_006519 ENSG00000146425 DYNLT1 CW-1|TCTEL1|tctex-1 dynein light chain Tctex-type 1 protein-coding 30694 chrX 48891681 48891817 + 0 NA Intergenic CpG -6163 NM_001032382 10084 Hs.534384 NM_005710 ENSG00000102103 PQBP1 MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS polyglutamine binding protein 1 protein-coding 27575 chr8 26266058 26266244 + 0 NA Intergenic Intergenic -25340 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2 regulatory subunit Balpha protein-coding 19375 chr3 39051904 39052046 + 0 NA promoter-TSS (NM_001346226) promoter-TSS (NM_001346226) -11 NR_144400 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 10777 chr15 96330528 96330673 + 0 NA promoter-TSS (NM_021005) promoter-TSS (NM_021005) -282 NM_021005 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 17908 chr20 34677158 34677262 + 0 NA promoter-TSS (NM_080476) promoter-TSS (NM_080476) 75 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 5112 chr11 33257189 33257320 + 0 NA promoter-TSS (NM_001048200) promoter-TSS (NM_001048200) -68 NM_001048200 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 18153 chr20 49046165 49046284 + 0 NA promoter-TSS (NM_001256135) promoter-TSS (NM_001256135) -22 NM_001316 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 4513 chr10 121407205 121407293 + 0 NA Intergenic Intergenic 124065 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 19103 chr3 5122132 5122253 + 0 NA promoter-TSS (NM_018184) promoter-TSS (NM_018184) -53 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 18374 chr20 61789439 61789679 + 0 NA intron (NM_001252338, intron 3 of 14) intron (NM_001252338, intron 3 of 14) 164103 NR_031658 100302168 NR_031658 ENSG00000130699 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 29888 chr9 112170358 112170541 + 0 NA intron (NM_022486, intron 1 of 16) intron (NM_022486, intron 1 of 16) 4848 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 29468 chr9 87725986 87726083 + 0 NA promoter-TSS (NM_001257973) promoter-TSS (NM_001257973) -25 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 19385 chr3 39406530 39406572 + 0 NA promoter-TSS (NM_002295) promoter-TSS (NM_002295) -138 NM_002295 3921 Hs.449909 NM_002295 ENSG00000168028 RPSA 37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40 ribosomal protein SA protein-coding 29827 chr9 109298071 109298224 + 0 NA intron (NM_018424, intron 1 of 15) intron (NM_018424, intron 1 of 15) 22817 NM_018424 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 548 chr1 32240821 32240925 + 0 NA intron (NR_026850, intron 1 of 6) CpG 837 NR_026850 339483 Hs.471067 NR_026850 MTMR9LP MTMR9L myotubularin related protein 9-like, pseudogene pseudo 30730 chrX 52261827 52261846 + 0 NA Intergenic CpG 71214 NR_003711 100124541 Hs.709779 NR_003711 ENSG00000221475 SNORA11D - small nucleolar RNA, H/ACA box 11D snoRNA 18629 chr22 19432442 19432596 + 0 NA promoter-TSS (NM_003325) promoter-TSS (NM_003325) 15 NM_001318151 64976 Hs.431307 NM_003776 ENSG00000185608 MRPL40 L40mt|MRP-L22|MRP-L40|MRPL22|NLVCF|URIM mitochondrial ribosomal protein L40 protein-coding 3450 chr10 24849545 24849685 + 0 NA 3' UTR (NM_001282786, exon 8 of 8) 3' UTR (NM_001282786, exon 8 of 8) 103029 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 29423 chr9 85258361 85258465 + 0 NA Intergenic L1PA7|LINE|L1 483616 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 1110 chr1 70332181 70332285 + 0 NA intron (NM_030816, intron 2 of 12) MER103C|DNA|hAT-Charlie 22501 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 10347 chr15 68272030 68272193 + 0 NA Intergenic Intergenic -5692 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 22945 chr5 98880294 98880398 + 0 NA intron (NM_001270, intron 21 of 34) L2a|LINE|L2 46188 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 - chromodomain helicase DNA binding protein 1 protein-coding 18182 chr20 50354841 50354937 + 0 NA Intergenic Intergenic -33547 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 30776 chrX 65643739 65643847 + 0 NA Intergenic Intergenic -23851 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 16486 chr2 155965504 155965608 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR 289375 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 783 chr1 44632326 44632405 + 0 NA exon (NM_018150, exon 6 of 15) exon (NM_018150, exon 6 of 15) 42243 NM_024587 79639 Hs.22157 NM_024587 ENSG00000126106 TMEM53 NET4 transmembrane protein 53 protein-coding 20954 chr3 190533705 190533809 + 0 NA intron (NM_001167929, intron 1 of 10) intron (NM_001167929, intron 1 of 10) 19706 NM_001167931 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 14366 chr19 35247896 35248047 + 0 NA promoter-TSS (NM_001260489) promoter-TSS (NM_001260489) -685 NM_205835 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 27629 chr8 29459075 29459242 + 0 NA Intergenic Intergenic -108408 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 23364 chr5 141320759 141320885 + 0 NA promoter-TSS (NM_005642) promoter-TSS (NM_005642) -38 NM_005642 6879 Hs.438838 NM_005642 ENSG00000178913 TAF7 TAF2F|TAFII55 TATA-box binding protein associated factor 7 protein-coding 13814 chr18 78090696 78090800 + 0 NA Intergenic Intergenic -97021 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 16357 chr2 134683627 134683787 + 0 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 35294 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 24726 chr6 54935872 54936004 + 0 NA intron (NM_001010872, intron 4 of 4) L2a|LINE|L2 89167 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 16688 chr2 174749132 174749236 + 0 NA intron (NM_001039523, intron 8 of 9) intron (NM_001039523, intron 8 of 9) 15288 NM_001039523 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 21859 chr4 144967357 144967461 + 0 NA Intergenic MIRc|SINE|MIR 129973 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 21381 chr4 55395737 55395868 + 0 NA promoter-TSS (NM_018475) promoter-TSS (NM_018475) -111 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 1152 chr1 78114408 78114409 + 0 NA intron (NM_017655, intron 3 of 5) intron (NM_017655, intron 3 of 5) 68503 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 8635 chr13 112711795 112711957 + 0 NA intron (NM_032189, intron 1 of 28) intron (NM_032189, intron 1 of 28) 21547 NM_015205 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 16270 chr2 127197906 127198062 + 0 NA intron (NM_001001665, intron 4 of 7) intron (NM_001001665, intron 4 of 7) 7783 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 28639 chr8 127507396 127507500 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -25309 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLo-1|LINC00860 cancer susceptibility candidate 8 (non-protein coding) ncRNA 19072 chr22_KI270733v1_random 173153 173307 + 0 NA promoter-TSS (NR_003285).6 promoter-TSS (NR_003285).6 -726 NR_003285 100008587 Hs.426704 NR_003285 RNA5-8S5 RN5-8S1 RNA, 5.8S ribosomal 5 rRNA 789 chr1 44775575 44775634 + 0 NA promoter-TSS (NR_000015) promoter-TSS (NR_000015) 30 NM_001012 6202 Hs.512675 NM_001012 ENSG00000142937 RPS8 S8 ribosomal protein S8 protein-coding 18386 chr20 62386966 62387089 + 0 NA promoter-TSS (NM_001024) promoter-TSS (NM_001024) -38 NM_001024 6227 Hs.190968 NM_001024 ENSG00000171858 RPS21 HLDF|S21 ribosomal protein S21 protein-coding 22277 chr5 16889742 16889846 + 0 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 46482 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 29967 chr9 115883813 115883917 + 0 NA Intergenic Intergenic 41233 NR_024032 58483 Hs.23367 NM_021208 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 27581 chr8 26449288 26449381 + 0 NA Intergenic CpG 58944 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 18908 chr22 38985277 38985285 + 0 NA intron (NM_004900, intron 2 of 7) AluSp|SINE|Alu 2882 NM_004900 9582 Hs.226307 NM_004900 ENSG00000179750 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme catalytic subunit 3B protein-coding 18631 chr22 19479771 19479780 + 0 NA promoter-TSS (NM_005659) promoter-TSS (NM_005659) -51 NM_001178010 8318 Hs.474217 NM_003504 ENSG00000093009 CDC45 CDC45L|CDC45L2|MGORS7|PORC-PI-1 cell division cycle 45 protein-coding 26521 chr7 84589179 84589283 + 0 NA Intergenic L1PA16|LINE|L1 56755 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 30568 chrX 23667428 23667451 + 0 NA promoter-TSS (NM_006406) promoter-TSS (NM_006406) -89 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 28234 chr8 95193074 95193265 + 0 NA Intergenic Intergenic 23205 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 2117 chr1 177256494 177256523 + 0 NA intron (NM_021165, intron 3 of 7) intron (NM_021165, intron 3 of 7) 85120 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 12964 chr17 73340229 73340333 + 0 NA intron (NM_001144952, intron 44 of 44) L1MB5|LINE|L1 -28277 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 7110 chr12 55940376 55940480 + 0 NA exon (NM_201554, exon 11 of 24) exon (NM_201554, exon 11 of 24) 8400 NM_201554 1606 Hs.524488 NM_001345 ENSG00000065357 DGKA DAGK|DAGK1|DGK-alpha diacylglycerol kinase alpha protein-coding 11444 chr16 58629912 58630062 + 0 NA promoter-TSS (NM_001265612) promoter-TSS (NM_001265612) -101 NM_016284 23019 Hs.460923 NM_016284 ENSG00000125107 CNOT1 AD-005|CDC39|NOT1|NOT1H CCR4-NOT transcription complex subunit 1 protein-coding 4398 chr10 114404847 114404925 + 0 NA promoter-TSS (NM_001001936) promoter-TSS (NM_001001936) -108 NM_032550 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 18179 chr20 50237504 50237608 + 0 NA Intergenic Intergenic -29930 NM_001278655 100506115 Hs.235484 NM_001278655 LINC01272 - long intergenic non-protein coding RNA 1272 protein-coding 6262 chr11 124622783 124622902 + 0 NA promoter-TSS (NM_032811) promoter-TSS (NM_032811) -4 NM_032811 84897 Hs.436410 NM_032811 ENSG00000154144 TBRG1 NIAM|TB-5 transforming growth factor beta regulator 1 protein-coding 22282 chr5 16936334 16936479 + 0 NA promoter-TSS (NM_012334) promoter-TSS (NM_012334) -130 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 19868 chr3 111717601 111717820 + 0 NA intron (NM_153268, intron 3 of 3) intron (NM_153268, intron 3 of 3) -14770 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 715 chr1 41003749 41003932 + 0 NA intron (NM_001301237, intron 8 of 14) MLT1H2|LTR|ERVL-MaLR -10750 NR_037868 100507178 Hs.660056 NR_037868 ENSG00000281207 SLFNL1-AS1 - SLFNL1 antisense RNA 1 ncRNA 3615 chr10 43362289 43362459 + 0 NA Intergenic CpG -9270 NM_001184963 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 2201 chr1 183023234 183023338 + 0 NA promoter-TSS (NM_002293) promoter-TSS (NM_002293) -174 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 27105 chr7 139771080 139771184 + 0 NA intron (NM_022740, intron 1 of 14) Tigger10|DNA|TcMar-Tigger 6762 NM_022740 28996 Hs.731417 NM_022740 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 9139 chr14 61178153 61178289 + 0 NA Intergenic Intergenic 103591 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 9199 chr14 64388088 64388179 + 0 NA promoter-TSS (NM_005956) promoter-TSS (NM_005956) 92 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 30759 chrX 55008653 55008757 + 0 NA TTS (NM_001271748) TTS (NM_001271748) 8382 NM_001271748 27301 Hs.659558 NM_014481 ENSG00000169188 APEX2 APE2|APEXL2|XTH2|ZGRF2 apurinic/apyrimidinic endodeoxyribonuclease 2 protein-coding 364 chr1 23959663 23959802 + 0 NA promoter-TSS (NM_017761) promoter-TSS (NM_017761) -79 NM_017761 55629 Hs.7862 NM_017761 ENSG00000189266 PNRC2 - proline rich nuclear receptor coactivator 2 protein-coding 13644 chr18 58224215 58224232 + 0 NA intron (NM_001144966, intron 1 of 29) intron (NM_001144966, intron 1 of 29) 2701 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 3931 chr10 75402344 75402451 + 0 NA promoter-TSS (NR_120651) promoter-TSS (NR_120651) -500 NR_110301 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 3069 chr1 240831524 240831628 + 0 NA intron (NM_002924, intron 9 of 17) L2c|LINE|L2 -219414 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 23653 chr5 163379700 163379864 + 0 NA Intergenic Intergenic -57789 NM_199246 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 12174 chr17 17958259 17958363 + 0 NA intron (NM_001288789, intron 1 of 12) MIR1_Amn|SINE|MIR 14159 NM_001082968 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 2680 chr1 215133635 215133739 + 0 NA intron (NM_014217, intron 3 of 6) intron (NM_014217, intron 3 of 6) 50470 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 2957 chr1 232630192 232630322 + 0 NA Intergenic CpG 112458 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 21558 chr4 87220609 87220734 + 0 NA promoter-TSS (NM_001292003) promoter-TSS (NM_001292003) -63 NM_001292007 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 1845 chr1 156193862 156194017 + 0 NA promoter-TSS (NM_001286184) promoter-TSS (NM_001286184) 7 NM_014655 9673 Hs.532375 NM_014655 ENSG00000160785 SLC25A44 - solute carrier family 25 member 44 protein-coding 1025 chr1 64343769 64343794 + 0 NA Intergenic Intergenic -127012 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 4692 chr11 2202466 2202617 + 0 NA Intergenic Intergenic 29478 NR_039834 100616126 NR_039834 ENSG00000265258 MIR4686 - microRNA 4686 ncRNA 29606 chr9 95092381 95092547 + 0 NA Intergenic Intergenic -6370 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 23785 chr5 177301786 177301810 + 0 NA exon (NM_001031677, exon 8 of 8) exon (NM_001031677, exon 8 of 8) 1946 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 11435 chr16 57816469 57816580 + 0 NA 3' UTR (NM_001278081, exon 4 of 4) 3' UTR (NM_001278081, exon 4 of 4) 5887 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 2478 chr1 205321769 205321873 + 0 NA promoter-TSS (NM_030952) promoter-TSS (NM_030952) -30 NM_030952 81788 Hs.497512 NM_030952 ENSG00000163545 NUAK2 SNARK NUAK family kinase 2 protein-coding 12966 chr17 74203572 74203676 + 0 NA promoter-TSS (NM_000999) promoter-TSS (NM_000999) -32 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 26068 chr7 36967412 36967588 + 0 NA intron (NM_001206482, intron 16 of 21) intron (NM_001206482, intron 16 of 21) 17612 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 17032 chr2 210955714 210955850 + 0 NA Intergenic Intergenic 338211 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 7498 chr12 98516389 98516493 + 0 NA promoter-TSS (NR_027157) promoter-TSS (NR_027157) -215 NR_027157 100128191 Hs.594042 NR_027157 ENSG00000257167 TMPO-AS1 - TMPO antisense RNA 1 ncRNA 15182 chr2 24919201 24919305 + 0 NA intron (NM_004036, intron 1 of 21) intron (NM_004036, intron 1 of 21) 764 NM_001320613 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3 adenylate cyclase 3 protein-coding 25318 chr6 149847662 149847765 + 0 NA intron (NM_032832, intron 2 of 6) intron (NM_032832, intron 2 of 6) -15785 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 3555 chr10 33264357 33264461 + 0 NA intron (NR_045259, intron 2 of 15) intron (NR_045259, intron 2 of 15) 70496 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 21216 chr4 17810771 17810878 + 0 NA promoter-TSS (NM_022346) promoter-TSS (NM_022346) 11 NM_022346 64151 Hs.567567 NM_022346 ENSG00000109805 NCAPG CAPG|CHCG|NY-MEL-3|YCG1 non-SMC condensin I complex subunit G protein-coding 720 chr1 41432895 41433008 + 0 NA Intergenic Intergenic 51732 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 460 chr1 27558009 27558163 + 0 NA intron (NM_001029882, intron 3 of 6) intron (NM_001029882, intron 3 of 6) 45408 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 27425 chr8 13357469 13357573 + 0 NA intron (NM_024767, intron 4 of 4) intron (NM_024767, intron 4 of 4) -80973 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 10278 chr15 64571907 64572057 + 0 NA intron (NM_015042, intron 1 of 8) L2b|LINE|L2 72562 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 18325 chr20 58112210 58112223 + 0 NA Intergenic Intergenic -38711 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 14035 chr19 8413147 8413254 + 0 NA promoter-TSS (NM_001005415) promoter-TSS (NM_001005415) -103 NM_001005416 51257 Hs.631861 NM_016496 ENSG00000099785 MARCH2 HSPC240|MARCH-II|RNF172 membrane associated ring-CH-type finger 2 protein-coding 8411 chr13 79491777 79491905 + 0 NA intron (NM_019080, intron 1 of 7) intron (NM_019080, intron 1 of 7) -10610 NR_046685 100874208 Hs.602801 NR_046685 ENSG00000232132 NDFIP2-AS1 - NDFIP2 antisense RNA 1 ncRNA 22685 chr5 69238849 69238944 + 0 NA intron (NM_001324070, intron 2 of 8) L1ME3Cz|LINE|L1 4101 NM_001324070 1022 Hs.184298 NM_001799 ENSG00000134058 CDK7 CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15 cyclin dependent kinase 7 protein-coding 26461 chr7 77309033 77309165 + 0 NA Intergenic L1MA5A|LINE|L1 -106099 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 16460 chr2 150526971 150527072 + 0 NA Intergenic Intergenic -39326 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 4838 chr11 12076644 12076748 + 0 NA Intergenic Intergenic -33880 NM_001346299 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 29700 chr9 100099026 100099167 + 0 NA promoter-TSS (NM_014425) promoter-TSS (NM_014425) -44 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 5149 chr11 35030900 35030936 + 0 NA Intergenic Intergenic 89081 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 23117 chr5 123916874 123916978 + 0 NA Intergenic Intergenic 371509 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 12872 chr17 66273196 66273299 + 0 NA Intergenic Intergenic -29561 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PRKACA protein kinase C alpha protein-coding 27112 chr7 140176965 140177164 + 0 NA promoter-TSS (NM_030647) promoter-TSS (NM_030647) -123 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 19082 chr3 4492312 4492416 + 0 NA promoter-TSS (NM_001099952) promoter-TSS (NM_001099952) 799 NR_108075 100996539 Hs.190365 NR_108075 ITPR1-AS1 - ITPR1 antisense RNA 1 (head to head) ncRNA 8883 chr14 36320649 36320779 + 0 NA promoter-TSS (NM_001144891) promoter-TSS (NM_001144891) -38 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 25277 chr6 145734975 145735014 + 0 NA intron (NR_038246, intron 1 of 2) CpG 125 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 23224 chr5 133026509 133026656 + 0 NA promoter-TSS (NM_001300816) promoter-TSS (NM_001300816) 22 NM_001300818 54819 Hs.29700 NM_017665 ENSG00000155329 ZCCHC10 - zinc finger CCHC-type containing 10 protein-coding 28666 chr8 129707779 129707933 + 0 NA Intergenic MER45B|DNA|hAT-Tip100 -27617 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 1618 chr1 125180106 125180256 + 0 NA Intergenic Intergenic 3661069 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 12342 chr17 33667174 33667278 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -133466 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 14306 chr19 19821715 19821868 + 0 NA promoter-TSS (NM_001099269) promoter-TSS (NM_001099269) -40 NM_001099269 440515 Hs.351906 NM_001099269 ENSG00000081665 ZNF506 - zinc finger protein 506 protein-coding 77 chr1 6235923 6236086 + 0 NA promoter-TSS (NR_103534) promoter-TSS (NR_103534) -20 NM_012405 23463 Hs.515688 NM_012405 ENSG00000116237 ICMT HSTE14|MST098|MSTP098|PCCMT|PCMT|PPMT isoprenylcysteine carboxyl methyltransferase protein-coding 28000 chr8 70557526 70557534 + 0 NA Intergenic MSTB|LTR|ERVL-MaLR 50161 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 22923 chr5 96657146 96657250 + 0 NA Intergenic Intergenic -4839 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 12985 chr17 74987492 74987603 + 0 NA promoter-TSS (NM_014603) promoter-TSS (NM_014603) -85 NM_014603 30850 Hs.78358 NM_014603 ENSG00000109089 CDR2L HUMPPA cerebellar degeneration related protein 2 like protein-coding 27458 chr8 18426427 18426531 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 35234 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 26673 chr7 99210408 99210533 + 0 NA Intergenic Intergenic -2981 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 14899 chr2 676800 676981 + 0 NA intron (NM_152834, intron 1 of 4) CpG 549 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 8827 chr14 33951003 33951151 + 0 NA promoter-TSS (NM_001308103) promoter-TSS (NM_001308103) 1 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 3890 chr10 73413682 73413809 + 0 NA intron (NM_004034, intron 1 of 13) CpG 340 NM_001320880 310 Hs.631827 NM_001156 ENSG00000138279 ANXA7 ANX7|SNX|SYNEXIN annexin A7 protein-coding 23335 chr5 140107654 140107785 + 0 NA non-coding (NR_102741, exon 1 of 4) non-coding (NR_102741, exon 1 of 4) 293 NR_102741 100505636 Hs.438871 NR_102739 ENSG00000245146 LINC01024 MA-linc1 long intergenic non-protein coding RNA 1024 ncRNA 17588 chr20 10599023 10599127 + 0 NA intron (NM_001009608, intron 5 of 7) intron (NM_001009608, intron 5 of 7) 50620 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 17130 chr2 219642678 219642785 + 0 NA TTS (NR_048551) TTS (NR_048551) 15161 NR_048551 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 8072 chr13 31424284 31424388 + 0 NA Intergenic Intergenic 224361 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 10272 chr15 64356157 64356287 + 0 NA promoter-TSS (NM_001329605) promoter-TSS (NM_001329605) 37 NM_001329606 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 10814 chr15 100879769 100879900 + 0 NA 5' UTR (NM_000693, exon 1 of 13) 5' UTR (NM_000693, exon 1 of 13) 142 NM_001293815 220 Hs.459538 NM_000693 ENSG00000184254 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family member A3 protein-coding 27379 chr8 10681039 10681192 + 0 NA intron (NM_001040032, intron 2 of 3) intron (NM_001040032, intron 2 of 3) 8478 NM_001040032 203076 Hs.371776 NM_001040032 ENSG00000171060 C8orf74 - chromosome 8 open reading frame 74 protein-coding 7897 chr12 131872285 131872437 + 0 NA Intergenic Intergenic -22373 NM_003565 8408 Hs.47061 NM_003565 ENSG00000177169 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 20625 chr3 170222311 170222459 + 0 NA promoter-TSS (NM_002740) promoter-TSS (NM_002740) -47 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 26611 chr7 93890895 93891003 + 0 NA promoter-TSS (NM_001271004) promoter-TSS (NM_001271004) 42 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 25711 chr7 13981205 13981356 + 0 NA intron (NM_004956, intron 5 of 13) intron (NM_004956, intron 5 of 13) 5234 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 22091 chr4 184474522 184474626 + 0 NA promoter-TSS (NM_002199) promoter-TSS (NM_002199) -2 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 3911 chr10 74150436 74150475 + 0 NA promoter-TSS (NM_006721) promoter-TSS (NM_006721) 336 NM_001320264 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 mu 1 subunit protein-coding 10160 chr15 56918494 56918608 + 0 NA promoter-TSS (NM_003205) promoter-TSS (NM_003205) -52 NR_015419 145783 Hs.620525 NR_015419 ENSG00000137871 LOC145783 - uncharacterized LOC145783 ncRNA 14640 chr19 48321901 48322005 + 0 NA Intergenic CpG -1878 NM_144577 93233 Hs.112645 NM_144577 ENSG00000105479 CCDC114 CILD20 coiled-coil domain containing 114 protein-coding 22906 chr5 95646733 95646849 + 0 NA promoter-TSS (NM_001131066) promoter-TSS (NM_001131066) 14 NM_001131066 317671 Hs.399758 NM_173362 ENSG00000175449 RFESD - Rieske Fe-S domain containing protein-coding 26023 chr7 33916407 33916511 + 0 NA intron (NM_133468, intron 3 of 15) intron (NM_133468, intron 3 of 15) 11548 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 5200 chr11 43739090 43739195 + 0 NA intron (NM_016142, intron 1 of 10) MER65C|LTR|ERV1 58549 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 2923 chr1 230104925 230105078 + 0 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 37806 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 19837 chr3 108620418 108620589 + 0 NA intron (NM_014648, intron 5 of 32) intron (NM_014648, intron 5 of 32) -30859 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 KIAA1524 CIP2A|p90 KIAA1524 protein-coding 2950 chr1 232226279 232226336 + 0 NA Intergenic Intergenic 289301 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2 signal induced proliferation associated 1 like 2 protein-coding 14329 chr19 29811848 29811947 + 0 NA promoter-TSS (NM_001238) promoter-TSS (NM_001238) -97 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 100 chr1 7471044 7471085 + 0 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -300205 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 30005 chr9 118643222 118643374 + 0 NA Intergenic Intergenic 726163 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 28545 chr8 122017482 122017655 + 0 NA Intergenic L1PBa1|LINE|L1 -376178 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 26881 chr7 116672191 116672295 + 0 NA promoter-TSS (NM_001324402) promoter-TSS (NM_001324402) -116 NM_001324402 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 14022 chr19 7748960 7749036 + 0 NA Intergenic MER66C|LTR|ERV1 -1420 NM_001144897 30835 Hs.278694 NM_021155 ENSG00000090659 CD209 CDSIGN|CLEC4L|DC-SIGN|DC-SIGN1 CD209 molecule protein-coding 20591 chr3 168095954 168096054 + 0 NA promoter-TSS (NM_001308155) promoter-TSS (NM_001308155) -79 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 8751 chr14 24146736 24146867 + 0 NA promoter-TSS (NM_001310332) promoter-TSS (NM_001310332) -74 NM_001310332 55072 Hs.375217 NM_017999 ENSG00000092098 RNF31 HOIP|ZIBRA ring finger protein 31 protein-coding 24732 chr6 56101125 56101273 + 0 NA intron (NM_001318751, intron 18 of 30) intron (NM_001318751, intron 18 of 30) -9538 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 20961 chr3 191246823 191246927 + 0 NA intron (NM_198184, intron 3 of 4) MLT1D|LTR|ERVL-MaLR -12270 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 4646 chr10 133274917 133275021 + 0 NA intron (NM_001164490, intron 1 of 19) intron (NM_001164490, intron 1 of 19) 1934 NM_001164490 101 Hs.501574 NM_001109 ENSG00000151651 ADAM8 CD156|CD156a|MS2 ADAM metallopeptidase domain 8 protein-coding 30470 chrX 8654039 8654143 + 0 NA intron (NM_000216, intron 2 of 13) intron (NM_000216, intron 2 of 13) 78096 NM_000216 3730 Hs.521869 NM_000216 ENSG00000011201 ANOS1 ADMLX|HH1|HHA|KAL|KAL1|KALIG-1|KMS|WFDC19 anosmin 1 protein-coding 2432 chr1 203512830 203513064 + 0 NA Intergenic Intergenic 18804 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 7947 chr13 21061544 21061686 + 0 NA promoter-TSS (NM_014572) promoter-TSS (NM_014572) -32 NM_014572 26524 Hs.78960 NM_014572 ENSG00000150457 LATS2 KPM large tumor suppressor kinase 2 protein-coding 16418 chr2 144358092 144358233 + 0 NA Intergenic Intergenic -25628 NM_001284234 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 17028 chr2 210170683 210170839 + 0 NA intron (NM_152519, intron 1 of 14) CpG 609 NM_152519 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 18390 chr20 62794286 62794430 + 0 NA Intergenic Intergenic -2047 NR_136405 55257 Hs.443260 NM_018270 ENSG00000101189 MRGBP C20orf20|Eaf7|MRG15BP|URCC4 MRG domain binding protein protein-coding 5289 chr11 57903807 57903971 + 0 NA Intergenic Intergenic -119992 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 18918 chr22 39311142 39311246 + 0 NA Intergenic Intergenic 2717 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 4760 chr11 7513604 7513758 + 0 NA promoter-TSS (NM_003621) promoter-TSS (NM_003621) -84 NM_003621 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 31047 chrX 129666440 129666544 + 0 NA Intergenic Intergenic -11536 NM_017413 8862 Hs.303084 NM_017413 ENSG00000171388 APLN APEL|XNPEP2 apelin protein-coding 5710 chr11 78188630 78188814 + 0 NA promoter-TSS (NM_001029859) promoter-TSS (NM_001029859) -90 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 4898 chr11 14907948 14908004 + 0 NA Intergenic (GGAGCA)n|Simple_repeat|Simple_repeat -15771 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 26708 chr7 100612028 100612144 + 0 NA promoter-TSS (NM_023948) promoter-TSS (NM_023948) -16 NM_001040097 64598 Hs.521086 NM_023948 ENSG00000106330 MOSPD3 CDS3|NET30 motile sperm domain containing 3 protein-coding 18589 chr21 45364080 45364150 + 0 NA Intergenic Intergenic -22125 NR_103811 388830 Hs.592162 NR_103811 ENSG00000237664 LINC00316 C21orf111|NCRNA00316|PRED59 long intergenic non-protein coding RNA 316 ncRNA 23450 chr5 147484314 147484418 + 0 NA intron (NM_001197294, intron 1 of 13) UCON78|DNA|DNA 25690 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 6106 chr11 113448127 113448231 + 0 NA intron (NM_016574, intron 1 of 6) intron (NM_016574, intron 1 of 6) 1909 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 23766 chr5 175517784 175517927 + 0 NA intron (NM_001322982, intron 8 of 10) intron (NM_001322982, intron 8 of 10) 39357 NM_001322978 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 TCC sideroflexin 1 protein-coding 8339 chr13 72291365 72291482 + 0 NA Intergenic Intergenic -424231 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 11974 chr17 4833775 4833872 + 0 NA intron (NM_170663, intron 1 of 31) intron (NM_170663, intron 1 of 31) 483 NM_153827 50488 Hs.443417 NM_015716 ENSG00000141503 MINK1 B55|MAP4K6|MINK|YSK2|ZC3 misshapen like kinase 1 protein-coding 13719 chr18 63775345 63775449 + 0 NA promoter-TSS (NM_001261831) promoter-TSS (NM_001261831) 22 NM_003784 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 23473 chr5 148979180 148979326 + 0 NA Intergenic Intergenic 83156 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 23391 chr5 142108809 142108826 + 0 NA promoter-TSS (NM_030571) promoter-TSS (NM_030571) 58 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 1103 chr1 69475206 69475310 + 0 NA Intergenic L1M1|LINE|L1 -91927 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 6357 chr11 130069788 130069941 + 0 NA promoter-TSS (NM_001328682) promoter-TSS (NM_001328682) 43 NM_001328686 334 Hs.370247 NM_001642 ENSG00000084234 APLP2 APLP-2|APPH|APPL2|CDEBP amyloid beta precursor like protein 2 protein-coding 19824 chr3 107699951 107700002 + 0 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 177040 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX, HMG-box containing protein-coding 22583 chr5 58259903 58260007 + 0 NA Intergenic Intergenic -137614 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 18141 chr20 47894814 47894954 + 0 NA Intergenic D20S16|Satellite|Satellite -88342 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 31148 chrX 150898611 150898746 + 0 NA 5' UTR (NM_001184808, exon 1 of 8) 5' UTR (NM_001184808, exon 1 of 8) 138 NM_001184808 83692 Hs.522805 NM_031462 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule like 2 protein-coding 7696 chr12 116528214 116528318 + 0 NA Intergenic Intergenic -5156 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 10398 chr15 71471393 71471497 + 0 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -75757 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 11556 chr16 69311681 69311810 + 0 NA intron (NM_013245, intron 1 of 10) CpG 361 NM_013245 27183 Hs.128420 NM_013245 ENSG00000132612 VPS4A SKD1|SKD1A|SKD2|VPS4|VPS4-1 vacuolar protein sorting 4 homolog A protein-coding 18939 chr22 40711640 40711744 + 0 NA Intergenic LTR81A|LTR|Gypsy 32514 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 12257 chr17 28407675 28407831 + 0 NA Intergenic Intergenic -1541 NM_001242366 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 5449 chr11 64924109 64924239 + 0 NA promoter-TSS (NM_006244) promoter-TSS (NM_006244) -497 NM_006244 5526 Hs.75199 NM_006244 ENSG00000068971 PPP2R5B B56B|PR61B protein phosphatase 2 regulatory subunit B'beta protein-coding 27942 chr8 63231898 63232007 + 0 NA Intergenic HERVL40-int|LTR|ERVL 62949 NM_001277818 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 19089 chr3 4898833 4898937 + 0 NA non-coding (NR_125914, exon 3 of 3) non-coding (NR_125914, exon 3 of 3) 7616 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 4206 chr10 99966468 99966572 + 0 NA intron (NM_015221, intron 3 of 16) intron (NM_015221, intron 3 of 16) -35524 NM_001318326 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 10055 chr15 48966792 48966907 + 0 NA Intergenic MIR|SINE|MIR -3405 NM_203349 399694 Hs.642615 NM_203349 ENSG00000185634 SHC4 RaLP|SHCD SHC adaptor protein 4 protein-coding 30133 chr9 127187613 127187717 + 0 NA intron (NM_001190728, intron 10 of 16) intron (NM_001190728, intron 10 of 16) -64900 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 14871 chr19 58387128 58387256 + 0 NA promoter-TSS (NM_001009) promoter-TSS (NM_001009) -77 NM_001009 6193 Hs.378103 NM_001009 ENSG00000083845 RPS5 S5 ribosomal protein S5 protein-coding 8921 chr14 39218477 39218594 + 0 NA Intergenic L4_A_Mam|LINE|RTE-X -15375 NM_001329214 4253 Hs.287694 NM_005930 ENSG00000150526 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6 melanoma inhibitory activity 2 protein-coding 19612 chr3 61250083 61250190 + 0 NA intron (NM_002012, intron 1 of 9) intron (NM_002012, intron 1 of 9) 1325 NM_001320900 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 6382 chr11 131888519 131888623 + 0 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) -22247 NM_001144058 50863 Hs.504352 NM_016522 ENSG00000182667 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 31162 chrX 152895865 152895966 + 0 NA Intergenic Intergenic -18527 NM_001178106 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 (LIM domain) protein-coding 25105 chr6 125154969 125155073 + 0 NA intron (NM_001003395, intron 1 of 6) intron (NM_001003395, intron 1 of 6) 832 NM_001003395 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 tumor protein D52-like 1 protein-coding 29633 chr9 96854475 96854629 + 0 NA promoter-TSS (NM_001001662) promoter-TSS (NM_001001662) -64 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 22300 chr5 17805554 17805658 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -1668 NR_134286 646241 Hs.407197 NR_134286 LOC646241 - uncharacterized LOC646241 ncRNA 5296 chr11 58654185 58654289 + 0 NA Intergenic Intergenic 31564 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 10417 chr15 72358982 72359086 + 0 NA intron (NM_001318825, intron 1 of 13) intron (NM_001318825, intron 1 of 13) -17079 NR_027262 80072 Hs.591113 NM_025005 ENSG00000260339 HEXA-AS1 C15orf34 HEXA antisense RNA 1 ncRNA 17659 chr20 14865273 14865377 + 0 NA intron (NM_080676, intron 5 of 16) LTR33A_|LTR|ERVL 64193 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 5555 chr11 67353560 67353712 + 0 NA promoter-TSS (NM_001256870) promoter-TSS (NM_001256870) -40 NM_021173 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 17930 chr20 35541912 35542108 + 0 NA promoter-TSS (NM_015966) promoter-TSS (NM_015966) -19 NM_198398 51614 Hs.472558 NM_015966 ENSG00000125991 ERGIC3 C20orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2 ERGIC and golgi 3 protein-coding 11221 chr16 30445851 30445955 + 0 NA promoter-TSS (NM_012248) promoter-TSS (NM_012248) 72 NM_012248 22928 Hs.118725 NM_012248 ENSG00000179918 SEPHS2 SPS2|SPS2b selenophosphate synthetase 2 protein-coding 7639 chr12 109996331 109996471 + 0 NA promoter-TSS (NM_139201) promoter-TSS (NM_139201) -12 NM_001135214 9815 Hs.434996 NM_014776 ENSG00000139436 GIT2 CAT-2|CAT2|PKL GIT ArfGAP 2 protein-coding 21231 chr4 21744185 21744289 + 0 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -46542 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 18529 chr21 38787639 38787796 + 0 NA Intergenic Intergenic -14240 NR_027065 400866 Hs.278704 NM_001001789 ENSG00000223806 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 7952 chr13 21459467 21459599 + 0 NA promoter-TSS (NM_001330059) promoter-TSS (NM_001330059) -163 NM_001330059 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20 zinc finger DHHC-type containing 20 protein-coding 4167 chr10 97640565 97640621 + 0 NA promoter-TSS (NM_018425) promoter-TSS (NM_018425) -93 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 16632 chr2 169824917 169824996 + 0 NA promoter-TSS (NM_001293186) promoter-TSS (NM_001293186) -25 NM_001293187 29081 Hs.470553 NM_014168 ENSG00000138382 METTL5 HSPC133 methyltransferase like 5 protein-coding 557 chr1 32716741 32716895 + 0 NA Intergenic Intergenic -14058 NM_030786 81493 Hs.712631 NM_030786 ENSG00000162520 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 19162 chr3 11272314 11272418 + 0 NA promoter-TSS (NM_006395) promoter-TSS (NM_006395) 42 NM_001144912 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 16197 chr2 118387112 118387216 + 0 NA Intergenic Intergenic -200778 NR_144530 100506797 Hs.116176 NR_144530 LOC100506797 - uncharacterized LOC100506797 ncRNA 23843 chr5 180861312 180861457 + 0 NA promoter-TSS (NM_001172638) promoter-TSS (NM_001172638) -98 NM_152283 643836 Hs.509227 NM_152283 ENSG00000196670 ZFP62 ZET|ZNF755 ZFP62 zinc finger protein protein-coding 22024 chr4 173370732 173370865 + 0 NA promoter-TSS (NM_003864) promoter-TSS (NM_003864) -144 NM_003864 8819 Hs.591715 NM_003864 ENSG00000164105 SAP30 - Sin3A associated protein 30 protein-coding 6372 chr11 130798456 130798560 + 0 NA Intergenic Intergenic 63602 NR_125383 100507431 Hs.375101 NR_125383 LOC100507431 - uncharacterized LOC100507431 ncRNA 8612 chr13 110455989 110456114 + 0 NA TTS (NM_001267044) TTS (NM_001267044) 7236 NM_001267044 100129836 Hs.640035 NM_001267044 COL4A2-AS2 - COL4A2 antisense RNA 2 protein-coding 22816 chr5 82969357 82969504 + 0 NA Intergenic LTR10F|LTR|ERV1 94907 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 21793 chr4 128427952 128428116 + 0 NA promoter-TSS (NR_125882) promoter-TSS (NR_125882) 18 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 21809 chr4 137124427 137124531 + 0 NA Intergenic Intergenic -69277 NR_134640 729307 Hs.552764 NR_134640 LOC729307 - uncharacterized LOC729307 ncRNA 5653 chr11 73779470 73779622 + 0 NA Intergenic CpG -8326 NR_134660 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 3325 chr10 14658323 14658427 + 0 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -53957 NM_001282696 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 11878 chr17 904099 904252 + 0 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) -5457 NR_135633 101927727 Hs.666198 NR_135633 ENSG00000262003 LOC101927727 - uncharacterized LOC101927727 ncRNA 12808 chr17 61833731 61833835 + 0 NA intron (NM_032043, intron 6 of 19) intron (NM_032043, intron 6 of 19) 29776 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 8675 chr14 20989842 20989917 + 0 NA promoter-TSS (NM_001029991) promoter-TSS (NM_001029991) 73 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 8152 chr13 40540547 40540651 + 0 NA Intergenic Intergenic -59593 NR_024506 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 - long intergenic non-protein coding RNA 598 ncRNA 9969 chr15 42084579 42084707 + 0 NA intron (NM_178034, intron 6 of 19) intron (NM_178034, intron 6 of 19) 9911 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 18638 chr22 19953748 19953852 + 0 NA intron (NM_001135162, intron 1 of 5) intron (NM_001135162, intron 1 of 5) 2278 NM_001135162 1312 Hs.370408 NM_000754 ENSG00000093010 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 3496 chr10 29471644 29471748 + 0 NA intron (NM_003174, intron 28 of 35) intron (NM_003174, intron 28 of 35) 61453 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 5540 chr11 67055157 67055261 + 0 NA Intergenic Intergenic -1609 NM_014578 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 9895 chr15 38702765 38702869 + 0 NA Intergenic LTR22A|LTR|ERVK 6219 NM_207444 400359 Hs.448785 NM_207444 ENSG00000175779 C15orf53 - chromosome 15 open reading frame 53 protein-coding 31035 chrX 123830482 123830621 + 0 NA Intergenic Intergenic -29261 NM_001204401 331 Hs.356076 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 7132 chr12 56300394 56300530 + 0 NA promoter-TSS (NM_004077) promoter-TSS (NM_004077) -71 NM_004077 1431 Hs.743252 NM_004077 ENSG00000062485 CS - citrate synthase protein-coding 14172 chr19 13892914 13893018 + 0 NA intron (NM_024323, intron 4 of 7) intron (NM_024323, intron 4 of 7) -13177 NM_017721 54862 Hs.269592 NM_017721 ENSG00000132024 CC2D1A FREUD-1|Freud-1/Aki1|MRT3 coiled-coil and C2 domain containing 1A protein-coding 17287 chr2 232593298 232593402 + 0 NA Intergenic Intergenic -12707 NM_001243252 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 9780 chr15 20304821 20304953 + 0 NA Intergenic Intergenic 22143 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 27693 chr8 37904095 37904199 + 0 NA Intergenic Intergenic -4650 NM_001002814 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 10532 chr15 80152481 80152585 + 0 NA promoter-TSS (NM_000137) promoter-TSS (NM_000137) -358 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 17211 chr2 226791704 226791820 + 0 NA intron (NM_005544, intron 1 of 1) CpG 7028 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 29194 chr9 71768489 71768593 + 0 NA 5' UTR (NM_001135820, exon 1 of 23) 5' UTR (NM_001135820, exon 1 of 23) 343 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 2167 chr1 181112591 181112737 + 0 NA Intergenic Intergenic 24162 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 30384 chr9 137286982 137287170 + 0 NA Intergenic Intergenic 9248 NM_017723 54863 Hs.495541 NM_017723 ENSG00000198113 TOR4A C9orf167 torsin family 4 member A protein-coding 8216 chr13 45341403 45341507 + 0 NA promoter-TSS (NM_001286273) promoter-TSS (NM_001286273) 110 NR_024458 100190939 Hs.375766 NR_024458 TPT1-AS1 - TPT1 antisense RNA 1 ncRNA 27160 chr7 143279403 143279581 + 0 NA intron (NR_133932, intron 2 of 2) intron (NR_133932, intron 2 of 2) -5407 NM_001242773 135932 Hs.17558 NM_153345 ENSG00000178826 TMEM139 - transmembrane protein 139 protein-coding 8859 chr14 35214113 35214156 + 0 NA intron (NM_001256681, intron 3 of 5) intron (NM_001256681, intron 3 of 5) -64424 NM_001282234 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 9482 chr14 83779429 83779533 + 0 NA Intergenic L2|LINE|L2 -1607794 NR_135155 105370605 NR_135155 ENSG00000258814 LOC105370605 - uncharacterized LOC105370605 ncRNA 20296 chr3 141830675 141830818 + 0 NA Intergenic Intergenic -45846 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 4890 chr11 14415247 14415260 + 0 NA Intergenic Intergenic -50747 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 9430 chr14 77314184 77314346 + 0 NA intron (NM_013382, intron 1 of 20) LTR40c|LTR|ERVL 6617 NM_013382 29954 Hs.132989 NM_013382 ENSG00000009830 POMT2 LGMD2N|MDDGA2|MDDGB2|MDDGC2 protein O-mannosyltransferase 2 protein-coding 15307 chr2 31384628 31384649 + 0 NA intron (NM_000379, intron 9 of 35) intron (NM_000379, intron 9 of 35) 30107 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 26576 chr7 91557396 91557539 + 0 NA Intergenic Intergenic 292999 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 23283 chr5 136631272 136631376 + 0 NA Intergenic Intergenic -265848 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 29127 chr9 68747091 68747195 + 0 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) -32863 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 21834 chr4 139989507 139989611 + 0 NA intron (NM_018717, intron 1 of 5) intron (NM_018717, intron 1 of 5) 164520 NM_018717 55534 Hs.586165 NM_018717 ENSG00000196782 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind like transcriptional coactivator 3 protein-coding 17547 chr20 6651180 6651333 + 0 NA Intergenic Intergenic -116842 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 8809 chr14 32201228 32201358 + 0 NA promoter-TSS (NR_004394).3 promoter-TSS (NR_004394).3 -752 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 18830 chr22 35300089 35300236 + 0 NA intron (NM_001135730, intron 1 of 13) intron (NM_001135730, intron 1 of 13) 358 NR_024195 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 22969 chr5 105670727 105670829 + 0 NA Intergenic HERVL40-int|LTR|ERVL 571304 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 21948 chr4 158672099 158672278 + 0 NA promoter-TSS (NM_004453) promoter-TSS (NM_004453) 67 NR_077235 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 12513 chr17 42155079 42155201 + 0 NA promoter-TSS (NM_001252039) promoter-TSS (NM_001252039) -96 NM_004583 5878 Hs.650382 NM_004583 ENSG00000108774 RAB5C L1880|RAB5CL|RAB5L|RABL RAB5C, member RAS oncogene family protein-coding 21590 chr4 92970149 92970253 + 0 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 665802 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 26657 chr7 98106757 98106921 + 0 NA promoter-TSS (NM_014916) promoter-TSS (NM_014916) -46 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 21146 chr4 6782559 6782663 + 0 NA promoter-TSS (NM_001100590) promoter-TSS (NM_001100590) -121 NM_014743 9778 Hs.79276 NM_014743 ENSG00000170871 KIAA0232 - KIAA0232 protein-coding 590 chr1 33472505 33472690 + 0 NA promoter-TSS (NM_145238) promoter-TSS (NM_145238) -34 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 1210 chr1 85298120 85298169 + 0 NA Intergenic Intergenic -21240 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 26567 chr7 90403367 90403520 + 0 NA 5' UTR (NM_001185073, exon 1 of 3) 5' UTR (NM_001185073, exon 1 of 3) 109 NM_012129 9069 Hs.731917 NM_012129 ENSG00000157224 CLDN12 - claudin 12 protein-coding 7793 chr12 122096737 122096841 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) 18061 NM_014938 22877 Hs.437153 NM_014938 ENSG00000175727 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 17312 chr2 234496635 234496730 + 0 NA 5' UTR (NM_005737, exon 1 of 1) 5' UTR (NM_005737, exon 1 of 1) 367 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 4201 chr10 99732717 99732816 + 0 NA promoter-TSS (NM_001320975) promoter-TSS (NM_001320975) -100 NM_001320975 1355 Hs.28326 NM_004376 ENSG00000014919 COX15 CEMCOX2 COX15, cytochrome c oxidase assembly homolog protein-coding 13691 chr18 62485742 62485893 + 0 NA Intergenic Intergenic -37608 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 28706 chr8 131916715 131916790 + 0 NA promoter-TSS (NM_001323557) promoter-TSS (NM_001323557) -2 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 16877 chr2 197310761 197310904 + 0 NA promoter-TSS (NM_001195144) promoter-TSS (NM_001195144) -35 NM_153697 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 4363 chr10 112140262 112140366 + 0 NA Intergenic Intergenic 43465 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 27177 chr7 144720292 144720396 + 0 NA intron (NM_001042482, intron 3 of 7) MER5A|DNA|hAT-Charlie 115709 NM_022445 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 22973 chr5 106399514 106399618 + 0 NA Intergenic Intergenic 611448 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 22335 chr5 32042710 32042733 + 0 NA intron (NM_178140, intron 7 of 24) intron (NM_178140, intron 7 of 24) -106562 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 18486 chr21 33383317 33383421 + 0 NA Intergenic Intergenic -19527 NM_001329128 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 10072 chr15 50256526 50256681 + 0 NA intron (NM_002112, intron 4 of 11) AluJb|SINE|Alu 9362 NM_002112 3067 Hs.1481 NM_002112 ENSG00000140287 HDC - histidine decarboxylase protein-coding 13364 chr18 27843964 27843976 + 0 NA Intergenic Intergenic 192615 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 6342 chr11 129639426 129639530 + 0 NA Intergenic Intergenic -22209 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 20396 chr3 150703915 150704057 + 0 NA promoter-TSS (NM_001308234) promoter-TSS (NM_001308234) 11 NR_121674 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 18499 chr21 34615274 34615397 + 0 NA promoter-TSS (NM_203417) promoter-TSS (NM_203417) -193 NM_004414 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 352 chr1 23559408 23559561 + 0 NA 5' UTR (NM_002167, exon 1 of 3) 5' UTR (NM_002167, exon 1 of 3) 310 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 27952 chr8 65634186 65634372 + 0 NA promoter-TSS (NM_001286702) promoter-TSS (NM_001286702) -62 NM_018120 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 18964 chr22 41822831 41822935 + 0 NA intron (NM_024821, intron 6 of 6) intron (NM_024821, intron 6 of 6) -10196 NR_103834 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 25520 chr7 538375 538479 + 0 NA Intergenic Intergenic 18036 NR_033963 441307 Hs.521334 NR_033963 ENSG00000223855 HRAT92 - heart tissue-associated transcript 92 ncRNA 30081 chr9 124054846 124054950 + 0 NA Intergenic Intergenic 43288 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 17789 chr20 23637913 23638017 + 0 NA promoter-TSS (NM_001288614) promoter-TSS (NM_001288614) 83 NM_000099 1471 Hs.304682 NM_000099 ENSG00000101439 CST3 ARMD11|HEL-S-2 cystatin C protein-coding 28541 chr8 121743120 121743274 + 0 NA Intergenic Intergenic -101807 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 18829 chr22 35257546 35257562 + 0 NA non-coding (NR_027780, exon 1 of 12) non-coding (NR_027780, exon 1 of 12) 102 NM_001003681 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 12167 chr17 17720239 17720392 + 0 NA intron (NM_030665, intron 1 of 5) intron (NM_030665, intron 1 of 5) 38842 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 30796 chrX 68895399 68895546 + 0 NA Intergenic MIR3|SINE|MIR 66475 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 2803 chr1 224065551 224065710 + 0 NA Intergenic Intergenic -48457 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 17984 chr20 38460347 38460480 + 0 NA Intergenic MamGypLTR1a|LTR|Gypsy 11044 NR_002986 677837 Hs.16936 NR_002986 ENSG00000199266 SNORA60 ACA60 small nucleolar RNA, H/ACA box 60 snoRNA 8947 chr14 49550076 49550094 + 0 NA Intergenic MER21B|LTR|ERVL 36331 NM_001032 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 30700 chrX 49029973 49030086 + 0 NA 3' UTR (NM_006521, exon 10 of 10) 3' UTR (NM_006521, exon 10 of 10) 13488 NM_001282142 7030 Hs.730740 NM_006521 ENSG00000068323 TFE3 RCCP2|RCCX1|TFEA|bHLHe33 transcription factor binding to IGHM enhancer 3 protein-coding 17408 chr2 241701965 241702037 + 0 NA promoter-TSS (NM_001330162) promoter-TSS (NM_001330162) -18 NM_032329 84289 Hs.529172 NM_032329 ENSG00000168395 ING5 p28ING5 inhibitor of growth family member 5 protein-coding 16554 chr2 161160293 161160441 + 0 NA promoter-TSS (NM_001199135) promoter-TSS (NM_001199135) -61 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 19169 chr3 12445259 12445260 + 0 NA Intergenic Intergenic -39173 NM_001321278 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 23098 chr5 121274161 121274265 + 0 NA Intergenic LTR72|LTR|ERV1 -48337 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 6991 chr12 50247305 50247535 + 0 NA intron (NM_016357, intron 2 of 10) MLT1G1|LTR|ERVL-MaLR -13208 NR_031625 100302220 NR_031625 ENSG00000221604 MIR1293 MIRN1293|hsa-mir-1293|mir-1293 microRNA 1293 ncRNA 8103 chr13 34157164 34157308 + 0 NA Intergenic Intergenic 339167 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 947 chr1 58816403 58816507 + 0 NA intron (NR_108106, intron 1 of 1) CpG 31304 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 5071 chr11 29282292 29282396 + 0 NA Intergenic Intergenic 700049 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 13213 chr18 2655583 2655687 + 0 NA promoter-TSS (NR_033754) promoter-TSS (NR_033754) -240 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 24658 chr6 47701429 47701533 + 0 NA intron (NM_153838, intron 1 of 9) intron (NM_153838, intron 1 of 9) 2936 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 3758 chr10 62250964 62251068 + 0 NA intron (NM_001282941, intron 2 of 4) Tigger7|DNA|TcMar-Tigger 17847 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 15946 chr2 88691510 88691700 + 0 NA promoter-TSS (NM_144563) promoter-TSS (NM_144563) -53 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 10823 chr15 101277392 101277564 + 0 NA promoter-TSS (NM_018445) promoter-TSS (NM_018445) 42 NM_018445 55829 Hs.32148 NM_018445 ENSG00000131871 SELENOS AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP selenoprotein S protein-coding 11639 chr16 75108945 75109049 + 0 NA 3' UTR (NM_032268, exon 5 of 5) 3' UTR (NM_032268, exon 5 of 5) 7775 NM_153486 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLD lactate dehydrogenase D protein-coding 29270 chr9 75239342 75239446 + 0 NA Intergenic LTR18A|LTR|ERVL 150912 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 18582 chr21 43768381 43768438 + 0 NA Intergenic Intergenic 7966 NM_000100 1476 Hs.695 NM_000100 ENSG00000160213 CSTB CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B protein-coding 500 chr1 29271891 29271995 + 0 NA intron (NM_133178, intron 7 of 29) intron (NM_133178, intron 7 of 29) 35427 NM_001195001 10076 Hs.19718 NM_005704 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase, receptor type U protein-coding 19347 chr3 37176271 37176366 + 0 NA promoter-TSS (NM_001134369) promoter-TSS (NM_001134369) 42 NM_017724 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 11624 chr16 74594593 74594697 + 0 NA intron (NM_012201, intron 1 of 26) intron (NM_012201, intron 1 of 26) 12499 NM_012201 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 23057 chr5 115461631 115461735 + 0 NA Intergenic Intergenic 83211 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 9285 chr14 69153106 69153231 + 0 NA promoter-TSS (NM_001284207) promoter-TSS (NM_001284207) 29 NM_001284208 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 26374 chr7 70481214 70481368 + 0 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -651246 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 11503 chr16 67521547 67521623 + 0 NA intron (NR_104656, intron 1 of 1) GA-rich|Low_complexity|Low_complexity 7160 NR_104656 100505942 Hs.121233 NR_104656 LOC100505942 - uncharacterized LOC100505942 ncRNA 30435 chrX 387196 387331 + 0 NA promoter-TSS (NM_013239) promoter-TSS (NM_013239) -308 NM_013239 28227 Hs.124942 NM_013239 ENSG00000167393 PPP2R3B NYREN8|PPP2R3L|PPP2R3LY|PR48 protein phosphatase 2 regulatory subunit B''beta protein-coding 12037 chr17 7381521 7381625 + 0 NA intron (NM_003985, intron 1 of 12) intron (NM_003985, intron 1 of 12) 599 NM_003985 8711 Hs.203420 NM_003985 ENSG00000174292 TNK1 - tyrosine kinase non receptor 1 protein-coding 26172 chr7 44606516 44606534 + 0 NA promoter-TSS (NM_001165036) promoter-TSS (NM_001165036) 3 NM_002541 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 19812 chr3 106345865 106345969 + 0 NA Intergenic L3|LINE|CR1 -476495 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 4386 chr10 113982870 113983072 + 0 NA Intergenic Intergenic -61076 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 30932 chrX 107454465 107454569 + 0 NA Intergenic L2a|LINE|L2 -67933 NM_032428 84443 Hs.496546 NM_032428 ENSG00000147234 FRMPD3 - FERM and PDZ domain containing 3 protein-coding 11151 chr16 24526346 24526383 + 0 NA Intergenic Intergenic -13223 NM_006910 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 18606 chr22 17258140 17258291 + 0 NA non-coding (NR_038398, exon 3 of 3) non-coding (NR_038398, exon 3 of 3) 8518 NR_038398 27442 Hs.517394 NR_038398 ENSG00000241832 CECR3 - cat eye syndrome chromosome region, candidate 3 (non-protein coding) ncRNA 2211 chr1 183234691 183234817 + 0 NA intron (NM_005562, intron 15 of 22) intron (NM_005562, intron 15 of 22) 48715 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 9562 chr14 92040048 92040192 + 0 NA promoter-TSS (NM_001321851) promoter-TSS (NM_001321851) -61 NM_001321851 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 26410 chr7 73855540 73855693 + 0 NA Intergenic CpG -5543 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 WBSCR28 - Williams-Beuren syndrome chromosome region 28 protein-coding 1362 chr1 95723446 95723603 + 0 NA Intergenic Intergenic 213408 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LOC100996635 - uncharacterized LOC100996635 ncRNA 21585 chr4 90689859 90689990 + 0 NA intron (NM_207491, intron 6 of 7) LTR16A2|LTR|ERVL 454893 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 30717 chrX 49200087 49200220 + 0 NA promoter-TSS (NM_003179) promoter-TSS (NM_003179) 49 NM_003179 6855 Hs.632804 NM_003179 ENSG00000102003 SYP MRX96|MRXSYP synaptophysin protein-coding 20575 chr3 165185801 165185953 + 0 NA TTS (NM_001318810) TTS (NM_001318810) 10125 NM_001318810 22865 Hs.101745 NM_014926 ENSG00000121871 SLITRK3 - SLIT and NTRK like family member 3 protein-coding 4155 chr10 97426093 97426148 + 0 NA promoter-TSS (NM_002629) promoter-TSS (NM_002629) -5 NM_002629 5223 Hs.632918 NM_002629 ENSG00000171314 PGAM1 HEL-S-35|PGAM-B|PGAMA phosphoglycerate mutase 1 protein-coding 8820 chr14 33589430 33589534 + 0 NA intron (NM_001164749, intron 5 of 11) intron (NM_001164749, intron 5 of 11) -119455 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 8982 chr14 50944501 50944573 + 0 NA promoter-TSS (NM_001163940) promoter-TSS (NM_001163940) -7 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 29426 chr9 85517332 85517436 + 0 NA Intergenic Intergenic 224645 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 9247 chr14 67412157 67412315 + 0 NA promoter-TSS (NM_016445) promoter-TSS (NM_016445) -36 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 28196 chr8 93700623 93700677 + 0 NA promoter-TSS (NR_033858) promoter-TSS (NR_033858) 143 NR_104267 137392 Hs.125038 NM_145269 ENSG00000188343 FAM92A FAM92A1 family with sequence similarity 92 member A protein-coding 28401 chr8 106657817 106657907 + 0 NA promoter-TSS (NM_181354) promoter-TSS (NM_181354) 54 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 27481 chr8 19385953 19386121 + 0 NA intron (NM_022071, intron 8 of 9) intron (NM_022071, intron 8 of 9) 72061 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 10907 chr16 2904310 2904401 + 0 NA Intergenic CpG -7624 NM_032296 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 11799 chr16 85891432 85891632 + 0 NA Intergenic Intergenic -7636 NM_002163 3394 Hs.137427 NM_002163 ENSG00000140968 IRF8 H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8 interferon regulatory factor 8 protein-coding 17436 chr20 881536 881640 + 0 NA intron (NM_015985, intron 4 of 8) L2b|LINE|L2 34746 NM_015985 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 3938 chr10 77160746 77160874 + 0 NA intron (NM_001322832, intron 5 of 27) intron (NM_001322832, intron 5 of 27) 19979 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 9277 chr14 68706051 68706181 + 0 NA Intergenic Intergenic -77329 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 15473 chr2 45681752 45681921 + 0 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 29932 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 29974 chr9 116100855 116100967 + 0 NA Intergenic Intergenic -52881 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 11821 chr16 87779258 87779385 + 0 NA promoter-TSS (NR_120309) promoter-TSS (NR_120309) -173 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 11203 chr16 29961882 29961979 + 0 NA promoter-TSS (NM_001083613) promoter-TSS (NM_001083613) -100 NM_001083613 124446 Hs.460574 NM_194280 ENSG00000149932 TMEM219 IGFBP-3R transmembrane protein 219 protein-coding 11755 chr16 83807862 83808021 + 0 NA promoter-TSS (NM_001537) promoter-TSS (NM_001537) 38 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 12791 chr17 59843198 59843302 + 0 NA TTS (NM_001329394) TTS (NM_001329394) 1984 NR_029493 406991 Hs.444569 NR_029493 ENSG00000062716 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 2459 chr1 204411880 204412028 + 0 NA promoter-TSS (NM_032833) promoter-TSS (NM_032833) -137 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 3543 chr10 32446175 32446203 + 0 NA promoter-TSS (NR_120660) promoter-TSS (NR_120660) 107 NR_109826 79741 Hs.585464 NM_024688 ENSG00000150076 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 10609 chr15 85331289 85331352 + 0 NA Intergenic Intergenic -49276 NR_106993 102465803 NR_106993 ENSG00000170776 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 26006 chr7 33040940 33041074 + 0 NA 5' UTR (NM_001166118, exon 1 of 11) 5' UTR (NM_001166118, exon 1 of 11) 158 NM_016489 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 6972 chr12 49366690 49366890 + 0 NA promoter-TSS (NM_023071) promoter-TSS (NM_023071) -115 NM_023071 65244 Hs.654826 NM_023071 ENSG00000123352 SPATS2 Nbla00526|P59SCR|SCR59|SPATA10 spermatogenesis associated serine rich 2 protein-coding 12070 chr17 8176374 8176478 + 0 NA promoter-TSS (NM_032354) promoter-TSS (NM_032354) -30 NM_032354 84314 Hs.513933 NM_032354 ENSG00000179029 TMEM107 GRVS638|PRO1268 transmembrane protein 107 protein-coding 20654 chr3 171874376 171874480 + 0 NA Intergenic Intergenic 26312 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 5323 chr11 59810670 59810815 + 0 NA 5' UTR (NM_017840, exon 1 of 4) 5' UTR (NM_017840, exon 1 of 4) 130 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 24412 chr6 33317939 33318090 + 0 NA promoter-TSS (NM_005453).5 promoter-TSS (NM_005453).5 -72 NM_001145338 9278 Hs.206770 NM_005453 ENSG00000236104 ZBTB22 BING1|ZBTB22A|ZNF297|ZNF297A|fru|fruitless zinc finger and BTB domain containing 22 protein-coding 9402 chr14 75982529 75982650 + 0 NA promoter-TSS (NM_001329938) promoter-TSS (NM_001329938) 422 NM_001329939 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 10250 chr15 63019777 63019928 + 0 NA Intergenic Intergenic -22787 NM_001018006 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 (alpha) protein-coding 11796 chr16 85767709 85767743 + 0 NA Intergenic Intergenic -16643 NM_206967 404550 Hs.461655 NM_206967 ENSG00000154102 C16orf74 - chromosome 16 open reading frame 74 protein-coding 2566 chr1 209567833 209567937 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -15815 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 24127 chr6 17865875 17866044 + 0 NA intron (NM_001105568, intron 4 of 37) intron (NM_001105568, intron 4 of 37) 121664 NM_001105568 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 9789 chr15 22979316 22979420 + 0 NA intron (NM_001287810, intron 1 of 31) CpG 1073 NM_001324122 23191 Hs.26704 NM_014608 ENSG00000273749 CYFIP1 P140SRA-1|SHYC|SRA-1|SRA1 cytoplasmic FMR1 interacting protein 1 protein-coding 27390 chr8 11481088 11481192 + 0 NA Intergenic Intergenic -12852 NM_001330465 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 6406 chr11 134034097 134034263 + 0 NA intron (NR_027276, intron 1 of 2) intron (NR_027276, intron 1 of 2) 1908 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 12024 chr17 7220337 7220409 + 0 NA promoter-TSS (NM_001321074) promoter-TSS (NM_001321074) -323 NM_001365 1742 Hs.463928 NM_001365 ENSG00000132535 DLG4 PSD95|SAP-90|SAP90 discs large MAGUK scaffold protein 4 protein-coding 1176 chr1 84089575 84089736 + 0 NA intron (NM_002731, intron 1 of 9) L2|LINE|L2 11680 NM_207578 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 17039 chr2 212032154 212032309 + 0 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 394129 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 2881 chr1 228013537 228013641 + 0 NA intron (NM_033131, intron 1 of 3) intron (NM_033131, intron 1 of 3) 6567 NM_033131 89780 Hs.336930 NM_033131 ENSG00000154342 WNT3A - Wnt family member 3A protein-coding 1039 chr1 65147598 65147702 + 0 NA promoter-TSS (NM_001005353) promoter-TSS (NM_001005353) 101 NM_203464 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 9057 chr14 55336315 55336419 + 0 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 64213 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 16083 chr2 106582258 106582362 + 0 NA Intergenic Intergenic -113965 NM_001144013 653489 Hs.726367 NM_001144013 ENSG00000153165 RGPD3 RGP3 RANBP2-like and GRIP domain containing 3 protein-coding 4723 chr11 4475666 4475717 + 0 NA Intergenic Intergenic -13188 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 28 chr1 1693096 1693237 + 0 NA promoter-TSS (NM_001110781) promoter-TSS (NM_001110781) -362 NM_001110781 728661 Hs.655255 NM_001110781 ENSG00000189339 SLC35E2B SLC35E2 solute carrier family 35 member E2B protein-coding 28211 chr8 94303789 94303864 + 0 NA Intergenic Intergenic -41507 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 10283 chr15 64835760 64835928 + 0 NA Intergenic CpG -6039 NM_001195059 80301 Hs.709337 NM_025201 ENSG00000241839 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing O2 protein-coding 3474 chr10 27155150 27155303 + 0 NA promoter-TSS (NM_001253866) promoter-TSS (NM_001253866) 402 NR_135469 84930 Hs.276905 NM_032844 ENSG00000120539 MASTL GREATWALL|GW|GWL|MAST-L|THC2 microtubule associated serine/threonine kinase like protein-coding 10223 chr15 60408532 60408657 + 0 NA Intergenic Intergenic -10608 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 9687 chr14 101809772 101809927 + 0 NA promoter-TSS (NM_178587) promoter-TSS (NM_178587) 46 NM_178587 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 3320 chr10 14604435 14604539 + 0 NA promoter-TSS (NM_001282697) promoter-TSS (NM_001282697) -69 NM_001282696 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 17475 chr20 3045983 3046087 + 0 NA promoter-TSS (NM_030811) promoter-TSS (NM_030811) 6 NM_030811 64949 Hs.18946 NM_030811 ENSG00000125901 MRPS26 C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3 mitochondrial ribosomal protein S26 protein-coding 20779 chr3 182619123 182619227 + 0 NA Intergenic Intergenic -112051 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 2184 chr1 182141143 182141247 + 0 NA Intergenic Intergenic -79483 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 8432 chr13 87124074 87124268 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB 212251 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 2298 chr1 197146630 197146807 + 0 NA promoter-TSS (NM_001206846) promoter-TSS (NM_001206846) -24 NM_001206846 259266 Hs.121028 NM_018136 ENSG00000066279 ASPM ASP|Calmbp1|MCPH5 abnormal spindle microtubule assembly protein-coding 25550 chr7 2255927 2256031 + 0 NA intron (NM_013321, intron 10 of 10) intron (NM_013321, intron 10 of 10) 1598 NR_106895 102465503 NR_106895 ENSG00000106266 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 30430 chrUn_KI270754v1 36001 36153 + 0 NA NA SST1|Satellite|centr NA NA 28756 chr8 139705803 139705907 + 0 NA Intergenic CpG-27595 -2799 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 16886 chr2 197705325 197705479 + 0 NA promoter-TSS (NM_138395) promoter-TSS (NM_138395) 98 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 6643 chr12 13165704 13165808 + 0 NA Intergenic Intergenic -30912 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 12666 chr17 50200257 50200411 + 0 NA intron (NM_000088, intron 1 of 50) CpG-11414 1305 NM_000088 1277 Hs.172928 NM_000088 ENSG00000108821 COL1A1 EDSC|OI1|OI2|OI3|OI4 collagen type I alpha 1 chain protein-coding 5465 chr11 65181761 65181865 + 0 NA promoter-TSS (NR_040008) promoter-TSS (NR_040008) -20 NR_040008 823 Hs.502842 NM_005186 ENSG00000014216 CAPN1 CANP|CANP1|CANPL1|SPG76|muCANP|muCL calpain 1 protein-coding 10738 chr15 93087967 93087998 + 0 NA intron (NM_020211, intron 1 of 3) intron (NM_020211, intron 1 of 3) 541 NM_001166287 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 30758 chrX 55000222 55000326 + 0 NA promoter-TSS (NM_001271748) promoter-TSS (NM_001271748) -49 NM_014481 27301 Hs.659558 NM_014481 ENSG00000169188 APEX2 APE2|APEXL2|XTH2|ZGRF2 apurinic/apyrimidinic endodeoxyribonuclease 2 protein-coding 13582 chr18 51030839 51030943 + 0 NA intron (NM_005359, intron 1 of 11) CpG 678 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 1344 chr1 94654182 94654295 + 0 NA Intergenic Intergenic 91662 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 14611 chr19 47130676 47130810 + 0 NA promoter-TSS (NM_001145713) promoter-TSS (NM_001145713) -80 NM_005500 10055 Hs.515500 NM_005500 ENSG00000142230 SAE1 AOS1|HSPC140|SUA1|UBLE1A SUMO1 activating enzyme subunit 1 protein-coding 19715 chr3 97815714 97815818 + 0 NA Intergenic AluJb|SINE|Alu -6274 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 3840 chr10 70404069 70404194 + 0 NA promoter-TSS (NM_004096) promoter-TSS (NM_004096) 26 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 7849 chr12 124747477 124747581 + 0 NA Intergenic Intergenic 116444 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 3338 chr10 15518283 15518453 + 0 NA intron (NM_003638, intron 29 of 29) intron (NM_003638, intron 29 of 29) -147309 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 C10orf38 family with sequence similarity 171 member A1 protein-coding 13087 chr17 79026784 79026932 + 0 NA intron (NR_049769, intron 1 of 3) intron (NR_049769, intron 1 of 3) 797 NR_040018 100507410 Hs.666723 NR_040018 ENSG00000265096 C1QTNF1-AS1 - C1QTNF1 antisense RNA 1 ncRNA 18930 chr22 40370549 40370682 + 0 NA promoter-TSS (NM_001301849) promoter-TSS (NM_001301849) 53 NM_001301849 27352 Hs.474914 NM_015705 ENSG00000100359 SGSM3 CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP small G protein signaling modulator 3 protein-coding 13389 chr18 31256067 31256171 + 0 NA Intergenic Intergenic -61970 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 31012 chrX 119853034 119853199 + 0 NA promoter-TSS (NM_023010) promoter-TSS (NM_023010) -88 NM_023010 65109 Hs.103832 NM_023010 ENSG00000125351 UPF3B HUPF3B|MRX62|MRXS14|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X|Upf3p-X UPF3 regulator of nonsense transcripts homolog B (yeast) protein-coding 25568 chr7 3194803 3194935 + 0 NA Intergenic MER74A|LTR|ERVL -36296 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 8998 chr14 51828108 51828212 + 0 NA Intergenic Intergenic -32144 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 27192 chr7 148884324 148884471 + 0 NA promoter-TSS (NM_152998) promoter-TSS (NM_152998) -48 NM_001203248 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 16010 chr2 99336453 99336611 + 0 NA promoter-TSS (NM_005783) promoter-TSS (NM_005783) -135 NM_005783 10190 Hs.536122 NM_005783 ENSG00000115514 TXNDC9 APACD|PHLP3 thioredoxin domain containing 9 protein-coding 8483 chr13 98571104 98571208 + 0 NA intron (NM_001032296, intron 1 of 10) intron (NM_001032296, intron 1 of 10) 5995 NM_001286649 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 27678 chr8 37142859 37143007 + 0 NA Intergenic Intergenic 350980 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 23537 chr5 151252956 151253107 + 0 NA promoter-TSS (NM_001167607) promoter-TSS (NM_001167607) -21 NM_001167607 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 29990 chr9 116837750 116837871 + 0 NA intron (NM_014010, intron 10 of 21) intron (NM_014010, intron 10 of 21) 150508 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 620 chr1 36088802 36088928 + 0 NA promoter-TSS (NM_017825) promoter-TSS (NM_017825) 13 NM_017825 54936 Hs.18021 NM_017825 ENSG00000116863 ADPRHL2 ARH3 ADP-ribosylhydrolase like 2 protein-coding 5565 chr11 67508153 67508313 + 0 NA promoter-TSS (NM_001271849) promoter-TSS (NM_001271849) -46 NR_073484 10263 Hs.523835 NM_005851 ENSG00000167797 CDK2AP2 DOC-1R|p14 cyclin dependent kinase 2 associated protein 2 protein-coding 8389 chr13 77327053 77327190 + 0 NA promoter-TSS (NM_015057) promoter-TSS (NM_015057) -79 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|Phr MYC binding protein 2, E3 ubiquitin protein ligase protein-coding 15532 chr2 52862973 52863077 + 0 NA Intergenic Intergenic -160410 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 8981 chr14 50941218 50941322 + 0 NA intron (NM_002863, intron 1 of 19) MER102c|DNA|hAT-Charlie 3260 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 30560 chrX 22300416 22300475 + 0 NA intron (NR_073010, intron 5 of 11) intron (NR_073010, intron 5 of 11) 27532 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 ZNF645 CT138|HAKAIL zinc finger protein 645 protein-coding 25050 chr6 116279880 116280003 + 0 NA promoter-TSS (NR_136524) promoter-TSS (NR_136524) -122 NR_136523 29940 Hs.458358 NM_013352 ENSG00000111817 DSE DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 937 chr1 58577257 58577361 + 0 NA 5' UTR (NM_002353, exon 1 of 1) 5' UTR (NM_002353, exon 1 of 1) 185 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 14582 chr19 45902833 45902859 + 0 NA promoter-TSS (NM_001012643) promoter-TSS (NM_001012643) -242 NM_001012643 339344 Hs.515478 NM_001012643 ENSG00000176182 MYPOP P42pop Myb related transcription factor, partner of profilin protein-coding 10504 chr15 78565397 78565521 + 0 NA promoter-TSS (NM_000745) promoter-TSS (NM_000745) -61 NM_000745 1138 Hs.1614 NM_000745 ENSG00000169684 CHRNA5 LNCR2 cholinergic receptor nicotinic alpha 5 subunit protein-coding 27814 chr8 52467211 52467339 + 0 NA Intergenic Intergenic -57396 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 3266 chr10 7818296 7818440 + 0 NA promoter-TSS (NM_031923) promoter-TSS (NM_031923) -136 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 19761 chr3 100334689 100334804 + 0 NA promoter-TSS (NM_020202) promoter-TSS (NM_020202) 28 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 18668 chr22 21642069 21642221 + 0 NA promoter-TSS (NM_022044) promoter-TSS (NM_022044) -108 NM_022044 23753 Hs.303116 NM_022044 ENSG00000128228 SDF2L1 - stromal cell derived factor 2 like 1 protein-coding 30738 chrX 53263245 53263343 + 0 NA intron (NM_001111125, intron 2 of 14) MIR3|SINE|MIR 18320 NM_001243197 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 22999 chr5 109455844 109456029 + 0 NA Intergenic Intergenic -45962 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 3631 chr10 44975009 44975113 + 0 NA intron (NM_032023, intron 3 of 10) intron (NM_032023, intron 3 of 10) 3821 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 C10orf10 DEPP|FIG|Fseg chromosome 10 open reading frame 10 protein-coding 30906 chrX 104432477 104432581 + 0 NA Intergenic Intergenic -133786 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 25269 chr6 144287116 144287220 + 0 NA Intergenic Intergenic -4569 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 20284 chr3 141311746 141311875 + 0 NA Intergenic CpG -12403 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 9132 chr14 60722475 60722579 + 0 NA intron (NM_017420, intron 1 of 2) CpG 1607 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 25452 chr6 161584247 161584351 + 0 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 113322 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 20817 chr3 184298936 184299075 + 0 NA promoter-TSS (NM_002808) promoter-TSS (NM_002808) -93 NM_002808 5708 Hs.518464 NM_002808 ENSG00000175166 PSMD2 P97|RPN1|S2|TRAP2 proteasome 26S subunit, non-ATPase 2 protein-coding 6399 chr11 133927776 133927904 + 0 NA intron (NM_001277285, intron 12 of 19) intron (NM_001277285, intron 12 of 19) -26100 NR_024344 283174 Hs.504370 NM_001001873 ENSG00000280237 MIR4697HG LINC00947 MIR4697 host gene ncRNA 18989 chr22 43187660 43187764 + 0 NA promoter-TSS (NM_015140) promoter-TSS (NM_015140) -581 NM_015140 23170 Hs.517670 NM_015140 ENSG00000100304 TTLL12 dJ526I14.2 tubulin tyrosine ligase like 12 protein-coding 12661 chr17 50095220 50095374 + 0 NA promoter-TSS (NM_001199900) promoter-TSS (NM_001199900) 22 NM_002611 5164 Hs.256667 NM_002611 ENSG00000005882 PDK2 PDHK2|PDKII pyruvate dehydrogenase kinase 2 protein-coding 31067 chrX 132218154 132218282 + 0 NA promoter-TSS (NM_021183) promoter-TSS (NM_021183) -57 NM_021183 57826 Hs.119889 NM_021183 ENSG00000123728 RAP2C - RAP2C, member of RAS oncogene family protein-coding 1786 chr1 154320985 154321068 + 0 NA promoter-TSS (NM_080429) promoter-TSS (NM_080429) -90 NM_080429 89872 Hs.259048 NM_080429 ENSG00000143595 AQP10 AQPA_HUMAN aquaporin 10 protein-coding 14183 chr19 14419419 14419559 + 0 NA promoter-TSS (NM_005804) promoter-TSS (NM_005804) -106 NR_046366 10212 Hs.311609 NM_005804 ENSG00000123136 DDX39A BAT1|BAT1L|DDX39|DDXL|URH49 DExD-box helicase 39A protein-coding 6057 chr11 110984263 110984367 + 0 NA Intergenic Intergenic -271126 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 25993 chr7 32490364 32490504 + 0 NA promoter-TSS (NM_012322) promoter-TSS (NM_012322) -23 NM_012322 23658 Hs.424908 NM_012322 ENSG00000106355 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 15933 chr2 86704574 86704671 + 0 NA intron (NM_001198954, intron 1 of 7) MLT1F2|LTR|ERVL-MaLR -15669 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 15331 chr2 33069973 33070111 + 0 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -64555 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 5257 chr11 47947032 47947136 + 0 NA Intergenic Intergenic -33474 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type J protein-coding 26562 chr7 90178916 90179085 + 0 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) 24625 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 3055 chr1 238892750 238892798 + 0 NA Intergenic Intergenic -406757 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINKA long intergenic non-protein coding RNA 1139 ncRNA 21929 chr4 154165224 154165328 + 0 NA Intergenic Intergenic 226021 NM_017639 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 6807 chr12 28498028 28498136 + 0 NA intron (NM_001330367, intron 11 of 11) intron (NM_001330367, intron 11 of 11) 307655 NM_001330367 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 14803 chr19 55210090 55210194 + 0 NA promoter-TSS (NM_002842) promoter-TSS (NM_002842) -636 NM_001161440 5794 Hs.179770 NM_002842 ENSG00000080031 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type H protein-coding 10977 chr16 8674488 8674601 + 0 NA promoter-TSS (NM_020686) promoter-TSS (NM_020686) -43 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 22582 chr5 58188378 58188486 + 0 NA Intergenic Intergenic -66091 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 22449 chr5 41925218 41925322 + 0 NA promoter-TSS (NM_033484) promoter-TSS (NM_033484) 16 NM_033484 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 18426 chr21 15730010 15730107 + 0 NA promoter-TSS (NM_001283042) promoter-TSS (NM_001283042) 33 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 21047 chr3 196142439 196142560 + 0 NA promoter-TSS (NR_034088) promoter-TSS (NR_034088) -137 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 18025 chr20 41078468 41078597 + 0 NA intron (NM_003286, intron 5 of 20) intron (NM_003286, intron 5 of 20) 49714 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 11300 chr16 48244194 48244335 + 0 NA promoter-TSS (NM_001300948) promoter-TSS (NM_001300948) 97 NM_001300948 83752 Hs.295923 NM_031490 ENSG00000102910 LONP2 LONP|LONPL|PLON|PSLON lon peptidase 2, peroxisomal protein-coding 10972 chr16 5097919 5098023 + 0 NA promoter-TSS (NM_001289029) promoter-TSS (NM_001289029) -151 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 8979 chr14 50677588 50677727 + 0 NA Intergenic Intergenic -9304 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 12296 chr17 29930251 29930388 + 0 NA promoter-TSS (NM_033389) promoter-TSS (NM_033389) -91 NM_001282130 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 3876 chr10 72626006 72626051 + 0 NA 5' UTR (NM_001195518, exon 1 of 12) 5' UTR (NM_001195518, exon 1 of 12) 163 NM_006077 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS mitochondrial calcium uptake 1 protein-coding 13137 chr17 81722321 81722475 + 0 NA Intergenic Intergenic 10162 NM_001270953 1468 Hs.548187 NM_012140 ENSG00000183048 SLC25A10 DIC solute carrier family 25 member 10 protein-coding 4576 chr10 125719524 125719660 + 0 NA promoter-TSS (NR_033847) promoter-TSS (NR_033847) 77 NM_001202438 26098 Hs.468688 NM_015608 ENSG00000107938 EDRF1 C10orf137 erythroid differentiation regulatory factor 1 protein-coding 8426 chr13 83221833 83221917 + 0 NA Intergenic Intergenic 660518 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 14784 chr19 54432282 54432386 + 0 NA intron (NM_001005367, intron 10 of 12) MIR|SINE|MIR 16704 NR_126418 104355426 Hs.528793 NR_126418 ENSG00000226696 LENG8-AS1 - LENG8 antisense RNA 1 ncRNA 7388 chr12 89162844 89162948 + 0 NA Intergenic Intergenic -143204 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 3097 chr1 243658805 243658909 + 0 NA intron (NM_001206729, intron 4 of 13) AluJr|SINE|Alu 184425 NM_005465 10000 Hs.498292 NM_005465 ENSG00000117020 AKT3 MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 AKT serine/threonine kinase 3 protein-coding 1328 chr1 93989073 93989177 + 0 NA Intergenic Intergenic -79527 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 4049 chr10 89352349 89352364 + 0 NA Intergenic MER72B|LTR|ERV1 19877 NM_001031683 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 25409 chr6 158040555 158040659 + 0 NA intron (NM_001178088, intron 3 of 25) intron (NM_001178088, intron 3 of 25) 23559 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 19143 chr3 9884606 9884775 + 0 NA Intergenic Intergenic -4436 NM_001321143 63924 Hs.567562 NM_022094 ENSG00000187288 CIDEC CIDE-3|CIDE3|FPLD5|FSP27 cell death inducing DFFA like effector c protein-coding 22533 chr5 54634256 54634336 + 0 NA Intergenic Intergenic 69028 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 5353 chr11 61967580 61967734 + 0 NA promoter-TSS (NM_002032) promoter-TSS (NM_002032) 3 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 23061 chr5 115626115 115626219 + 0 NA promoter-TSS (NM_181836) promoter-TSS (NM_181836) 12 NM_001164468 100302736 NM_001164468 ENSG00000251201 TMED7-TICAM2 - TMED7-TICAM2 readthrough protein-coding 17791 chr20 23920187 23920257 + 0 NA Intergenic Intergenic -40479 NM_001900 1473 Hs.121489 NM_001900 ENSG00000170367 CST5 - cystatin D protein-coding 25281 chr6 145898445 145898543 + 0 NA intron (NM_173082, intron 25 of 29) MSTB2|LTR|ERVL-MaLR 65603 NM_001042683 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 17939 chr20 35875640 35875825 + 0 NA intron (NM_016436, intron 9 of 17) intron (NM_016436, intron 9 of 17) 78894 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 27279 chr7 156893213 156893317 + 0 NA promoter-TSS (NM_022458) promoter-TSS (NM_022458) -57 NM_022458 64327 Hs.209989 NM_022458 ENSG00000105983 LMBR1 ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|ZRS limb development membrane protein 1 protein-coding 3711 chr10 58157498 58157646 + 0 NA Intergenic Intergenic 110362 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 9569 chr14 92511691 92511795 + 0 NA Intergenic Intergenic -2038 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 21579 chr4 90122479 90122583 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -5002 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 4633 chr10 132332078 132332231 + 0 NA promoter-TSS (NM_001318881) promoter-TSS (NM_001318881) 44 NM_001143758 80313 Hs.119897 NM_030626 ENSG00000148814 LRRC27 - leucine rich repeat containing 27 protein-coding 19512 chr3 50235877 50235985 + 0 NA promoter-TSS (NM_001282618) promoter-TSS (NM_001282618) -226 NM_002070 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 26038 chr7 35015526 35015678 + 0 NA intron (NM_015283, intron 3 of 21) MER41B|LTR|ERV1 22439 NM_015283 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like 1 protein-coding 25304 chr6 148747980 148748084 + 0 NA intron (NM_005715, intron 1 of 7) CpG 897 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 732 chr1 42335191 42335338 + 0 NA promoter-TSS (NM_001198851) promoter-TSS (NM_001198851) -32 NM_014947 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 23880 chr6 2442250 2442369 + 0 NA Intergenic Intergenic 192294 NR_131168 154386 Hs.680574 NM_152554 ENSG00000164385 LINC01600 C6orf195|bA145H9.2 long intergenic non-protein coding RNA 1600 ncRNA 30862 chrX 84735084 84735218 + 0 NA Intergenic MER61D|LTR|ERV1 -199000 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 29397 chr9 84668360 84668464 + 0 NA promoter-TSS (NM_001291937) promoter-TSS (NM_001291937) -46 NM_001291937 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 6906 chr12 44217286 44217394 + 0 NA intron (NM_032256, intron 5 of 7) intron (NM_032256, intron 5 of 7) 381479 NM_001286213 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 28419 chr8 109229288 109229436 + 0 NA Intergenic Intergenic 100571 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 9623 chr14 96267481 96267585 + 0 NA Intergenic Intergenic 11323 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 11010 chr16 10878722 10878863 + 0 NA intron (NR_104444, intron 1 of 17) intron (NR_104444, intron 1 of 17) 1594 NM_001286403 4261 Hs.592051 NM_000246 ENSG00000179583 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II major histocompatibility complex transactivator protein-coding 6961 chr12 49018729 49018905 + 0 NA promoter-TSS (NM_001206710) promoter-TSS (NM_001206710) 29 NM_002733 5571 Hs.530862 NM_002733 ENSG00000181929 PRKAG1 AMPKG protein kinase AMP-activated non-catalytic subunit gamma 1 protein-coding 11737 chr16 81987872 81987953 + 0 NA Intergenic Intergenic 23576 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 29017 chr9 28234996 28235100 + 0 NA intron (NM_152570, intron 5 of 6) L1M1|LINE|L1 484257 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 2771 chr1 222589813 222589959 + 0 NA promoter-TSS (NM_139352) promoter-TSS (NM_139352) -34 NR_110613 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 1416 chr1 101238798 101238902 + 0 NA 5' UTR (NM_001320730, exon 2 of 2) 5' UTR (NM_001320730, exon 2 of 2) 2101 NM_001400 1901 Hs.154210 NM_001400 ENSG00000170989 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 28824 chr8 143943186 143943298 + 0 NA promoter-TSS (NM_201383) promoter-TSS (NM_201383) 716 NM_201382 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 21433 chr4 71126846 71126947 + 0 NA Intergenic Arthur1|DNA|hAT-Tip100 -60390 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 16897 chr2 199955389 199955521 + 0 NA exon (NM_001039693, exon 1 of 8) exon (NM_001039693, exon 1 of 8) 138 NM_024520 79568 Hs.154494 NM_024520 ENSG00000162972 MAIP1 C2orf47 matrix AAA peptidase interacting protein 1 protein-coding 24054 chr6 12472674 12472761 + 0 NA Intergenic Intergenic 182421 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 1658 chr1 147717126 147717331 + 0 NA Intergenic LTR18B|LTR|ERVL 43378 NM_181703 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 12185 chr17 18315149 18315272 + 0 NA promoter-TSS (NM_001320759) promoter-TSS (NM_001320759) -70 NM_144775 140775 Hs.592944 NM_144775 ENSG00000176994 SMCR8 - Smith-Magenis syndrome chromosome region, candidate 8 protein-coding 18168 chr20 49812622 49812714 + 0 NA promoter-TSS (NM_001260491) promoter-TSS (NM_001260491) -45 NR_048538 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 12776 chr17 58417789 58417894 + 0 NA promoter-TSS (NM_017763) promoter-TSS (NM_017763) -259 NM_001305544 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 15767 chr2 70381967 70382072 + 0 NA Intergenic Intergenic -79931 NM_032822 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 23346 chr5 140346683 140346834 + 0 NA promoter-TSS (NM_001945) promoter-TSS (NM_001945) -155 NM_001945 1839 Hs.799 NM_001945 ENSG00000113070 HBEGF DTR|DTS|DTSF|HEGFL heparin binding EGF like growth factor protein-coding 11602 chr16 72008577 72008781 + 0 NA promoter-TSS (NM_001361) promoter-TSS (NM_001361) -65 NM_001361 1723 Hs.654427 NM_001361 ENSG00000102967 DHODH DHOdehase|POADS|URA1 dihydroorotate dehydrogenase (quinone) protein-coding 21675 chr4 107279862 107279944 + 0 NA Intergenic Intergenic -243607 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 1635 chr1 145891282 145891387 + 0 NA 3' UTR (NM_003637, exon 30 of 30) 3' UTR (NM_003637, exon 30 of 30) -5468 NM_144698 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 19095 chr3 5000070 5000174 + 0 NA Intergenic Intergenic -20161 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 26267 chr7 50715145 50715169 + 0 NA intron (NM_001001555, intron 2 of 16) intron (NM_001001555, intron 2 of 16) -9856 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 15809 chr2 73737298 73737402 + 0 NA promoter-TSS (NM_016058) promoter-TSS (NM_016058) 56 NM_001330387 51002 Hs.157401 NM_016058 ENSG00000144034 TPRKB CGI-121|CGI121 TP53RK binding protein protein-coding 2490 chr1 205631947 205632103 + 0 NA 5' UTR (NM_021795, exon 1 of 3) 5' UTR (NM_021795, exon 1 of 3) 847 NM_001973 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 7823 chr12 123126650 123126754 + 0 NA Intergenic Intergenic -16213 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 5000 chr11 20112338 20112481 + 0 NA intron (NM_001111019, intron 26 of 27) intron (NM_001111019, intron 26 of 27) 47915 NM_001029865 120237 Hs.558604 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 10169 chr15 57591746 57591876 + 0 NA promoter-TSS (NM_001018100) promoter-TSS (NM_001018100) -93 NR_104368 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 11609 chr16 72927702 72927868 + 0 NA intron (NM_001164766, intron 2 of 8) intron (NM_001164766, intron 2 of 8) 120590 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 19819 chr3 107241424 107241528 + 0 NA promoter-TSS (NR_028303) promoter-TSS (NR_028303) 784 NR_028302 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 26554 chr7 88219983 88220140 + 0 NA promoter-TSS (NM_003130) promoter-TSS (NM_003130) 23 NM_001256891 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 5194 chr11 43311903 43311931 + 0 NA promoter-TSS (NM_001142930) promoter-TSS (NM_001142930) -38 NM_001142930 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 3991 chr10 80471127 80471232 + 0 NA intron (NM_030927, intron 1 of 8) intron (NM_030927, intron 1 of 8) 16897 NM_001128309 81619 Hs.718943 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14 tetraspanin 14 protein-coding 7528 chr12 101279991 101280164 + 0 NA promoter-TSS (NM_014503) promoter-TSS (NM_014503) -50 NM_014503 27340 Hs.295732 NM_014503 ENSG00000120800 UTP20 1A6/DRIM|DRIM UTP20, small subunit processome component protein-coding 15329 chr2 32946767 32946779 + 0 NA promoter-TSS (NM_206943) promoter-TSS (NM_206943) -529 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 9604 chr14 94599349 94599453 + 0 NA Intergenic Intergenic -12976 NM_001085 12 Hs.534293 NM_001085 ENSG00000196136 SERPINA3 AACT|ACT|GIG24|GIG25 serpin family A member 3 protein-coding 6683 chr12 15446956 15447060 + 0 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -99336 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase, receptor type O protein-coding 17410 chr2 241734573 241734589 + 0 NA promoter-TSS (NM_001287249) promoter-TSS (NM_001287249) 2 NM_152783 728294 Hs.516813 NM_152783 ENSG00000180902 D2HGDH D2HGD D-2-hydroxyglutarate dehydrogenase protein-coding 12540 chr17 43388544 43388665 + 0 NA non-coding (NR_027412, exon 1 of 6) non-coding (NR_027412, exon 1 of 6) 294 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 15760 chr2 70142787 70142908 + 0 NA Intergenic CpG -17531 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 8382 chr13 76894919 76894985 + 0 NA Intergenic Intergenic -8547 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 29911 chr9 113410303 113410449 + 0 NA promoter-TSS (NM_001278629) promoter-TSS (NM_001278629) -268 NM_001278629 257169 Hs.632691 NM_152786 ENSG00000157653 C9orf43 - chromosome 9 open reading frame 43 protein-coding 27794 chr8 48921941 48922045 + 0 NA promoter-TSS (NM_003068) promoter-TSS (NM_003068) -553 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 22569 chr5 57328188 57328292 + 0 NA Intergenic LTR8B|LTR|ERV1 114166 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 25971 chr7 30413193 30413335 + 0 NA Intergenic Intergenic 22379 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 22851 chr5 88785882 88786028 + 0 NA intron (NM_001193347, intron 4 of 11) intron (NM_001193347, intron 4 of 11) 37972 NM_001193349 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 23742 chr5 173144905 173145084 + 0 NA intron (NM_013980, intron 1 of 5) intron (NM_013980, intron 1 of 5) 552 NM_013979 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 6389 chr11 132845035 132845139 + 0 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 98550 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 7287 chr12 76329297 76329345 + 0 NA Intergenic Intergenic 19121 NM_024685 79738 Hs.96322 NM_024685 ENSG00000179941 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 22266 chr5 15249330 15249434 + 0 NA intron (NR_109944, intron 1 of 2) L1MEd|LINE|L1 17178 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 20403 chr3 151085544 151085648 + 0 NA Intergenic CpG -1202 NM_053002 116931 Hs.744234 NM_053002 ENSG00000144893 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12 like protein-coding 6464 chr12 3455390 3455595 + 0 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -35706 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 26516 chr7 84237636 84237815 + 0 NA Intergenic Intergenic -42824 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 740 chr1 42817082 42817205 + 0 NA promoter-TSS (NM_001017922) promoter-TSS (NM_001017922) 38 NM_001017922 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 24915 chr6 90296804 90296908 + 0 NA promoter-TSS (NM_001170794) promoter-TSS (NM_001170794) 52 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25 BTB domain and CNC homolog 2 protein-coding 19091 chr3 4979236 4979340 + 0 NA promoter-TSS (NM_003670) promoter-TSS (NM_003670) -124 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 28362 chr8 103021004 103021150 + 0 NA promoter-TSS (NM_001695) promoter-TSS (NM_001695) 57 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 21048 chr3 196143177 196143312 + 0 NA intron (NR_034088, intron 1 of 2) MIR3|SINE|MIR 608 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 26663 chr7 98352739 98352873 + 0 NA intron (NM_018842, intron 3 of 13) intron (NM_018842, intron 3 of 13) 48309 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 3434 chr10 24344417 24344519 + 0 NA intron (NM_001098500, intron 3 of 18) intron (NM_001098500, intron 3 of 18) 68783 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 9250 chr14 67532997 67533142 + 0 NA promoter-TSS (NM_020715) promoter-TSS (NM_020715) -222 NM_020715 57475 Hs.594236 NM_020715 ENSG00000054690 PLEKHH1 - pleckstrin homology, MyTH4 and FERM domain containing H1 protein-coding 23460 chr5 148343144 148343298 + 0 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 7662 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 5374 chr11 62622007 62622182 + 0 NA promoter-TSS (NM_001288721) promoter-TSS (NM_001288721) 81 NM_001288722 26229 Hs.502759 NM_012200 ENSG00000149541 B3GAT3 GLCATI|JDSCD|glcUAT-I beta-1,3-glucuronyltransferase 3 protein-coding 29960 chr9 115591720 115591865 + 0 NA Intergenic Intergenic 152447 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 12291 chr17 29732653 29732736 + 0 NA intron (NM_001282130, intron 2 of 7) intron (NM_001282130, intron 2 of 7) 28738 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 10576 chr15 82750397 82750617 + 0 NA promoter-TSS (NR_110099) promoter-TSS (NR_110099) -57 NR_110098 100505616 Hs.513091 NR_110096 ENSG00000250988 SNHG21 FSD2-AS1|SCARNA15HG small nucleolar RNA host gene 21 ncRNA 5725 chr11 80083554 80083710 + 0 NA Intergenic Intergenic -642981 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 2039 chr1 168710106 168710230 + 0 NA intron (NM_001937, intron 2 of 3) intron (NM_001937, intron 2 of 3) 19036 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 13276 chr18 12308781 12308870 + 0 NA intron (NM_001303526, intron 2 of 2) CpG-12373 766 NM_001303528 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 6212 chr11 120432193 120432342 + 0 NA intron (NM_001301084, intron 11 of 40) intron (NM_001301084, intron 11 of 40) 46973 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 9004 chr14 52342952 52343157 + 0 NA Intergenic MLT2F|LTR|ERVL 28756 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 24027 chr6 10722946 10723051 + 0 NA promoter-TSS (NM_001165258) promoter-TSS (NM_001165258) 83 NM_001165258 51522 Hs.519557 NM_016462 ENSG00000111843 TMEM14C C6orf53|HSPC194|MSTP073|NET26|bA421M1.6 transmembrane protein 14C protein-coding 11260 chr16 31117517 31117624 + 0 NA promoter-TSS (NM_032188) promoter-TSS (NM_032188) -94 NM_032188 84148 Hs.533803 NM_032188 ENSG00000103510 KAT8 MOF|MYST1|ZC2HC8|hMOF lysine acetyltransferase 8 protein-coding 12118 chr17 12977537 12977657 + 0 NA intron (NM_001321166, intron 17 of 19) intron (NM_001321166, intron 17 of 19) 40467 NM_018127 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 21917 chr4 153224120 153224208 + 0 NA intron (NM_001302693, intron 1 of 2) intron (NM_001302693, intron 1 of 2) 19750 NM_015271 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 12465 chr17 40510442 40510544 + 0 NA Intergenic Intergenic -8891 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 13281 chr18 12407878 12407882 + 0 NA promoter-TSS (NM_001142405) promoter-TSS (NM_001142405) -16 NM_001142405 10650 Hs.514718 NM_006553 ENSG00000141391 PRELID3A C18orf43|HFL-EDDG1|SLMO1 PRELI domain containing 3A protein-coding 3774 chr10 63432307 63432330 + 0 NA intron (NM_001322258, intron 1 of 24) LTR72B|LTR|ERV1 1743 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 14704 chr19 49817433 49817559 + 0 NA promoter-TSS (NM_030973) promoter-TSS (NM_030973) -783 NM_030973 81857 Hs.656639 NM_030973 ENSG00000104973 MED25 ACID1|ARC92|BVSYS|CMT2B2|P78|PTOV2|TCBAP0758 mediator complex subunit 25 protein-coding 17874 chr20 33401539 33401564 + 0 NA promoter-TSS (NM_001278167) promoter-TSS (NM_001278167) 18 NM_016082 51654 Hs.435952 NM_016082 ENSG00000101391 CDK5RAP1 C20orf34|C42|CGI-05|HSPC167 CDK5 regulatory subunit associated protein 1 protein-coding 16626 chr2 169095747 169095851 + 0 NA 3' UTR (NM_001289763, exon 5 of 5) 3' UTR (NM_001289763, exon 5 of 5) 14692 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 11498 chr16 67404934 67404945 + 0 NA intron (NM_001323627, intron 3 of 11) intron (NM_001323627, intron 3 of 11) -11404 NM_016140 51673 Hs.534458 NM_015964 ENSG00000159713 TPPP3 CGI-38|TPPP/p20|p20|p25gamma tubulin polymerization promoting protein family member 3 protein-coding 26582 chr7 92057487 92057592 + 0 NA intron (NM_005751, intron 22 of 49) intron (NM_005751, intron 22 of 49) 76987 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 8846 chr14 34539626 34539783 + 0 NA promoter-TSS (NM_018453) promoter-TSS (NM_018453) 33 NM_001318916 55837 Hs.433269 NM_018453 ENSG00000129518 EAPP BM036|C14orf11 E2F associated phosphoprotein protein-coding 29217 chr9 72527495 72527601 + 0 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 5747 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 20881 chr3 187187191 187187191 + 0 NA Intergenic Intergenic -10295 NM_153708 132112 Hs.518480 NM_153708 ENSG00000175077 RTP1 Z3CXXC1 receptor transporter protein 1 protein-coding 1126 chr1 74198212 74198316 + 0 NA promoter-TSS (NM_001105659) promoter-TSS (NM_001105659) 52 NM_001199329 8790 Hs.480085 NM_003838 ENSG00000254685 FPGT GFPP fucose-1-phosphate guanylyltransferase protein-coding 23196 chr5 132073824 132073928 + 0 NA promoter-TSS (NM_000758) promoter-TSS (NM_000758) 84 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 GMCSF colony stimulating factor 2 protein-coding 16540 chr2 160220699 160220723 + 0 NA Intergenic LTR50|LTR|ERVL -20398 NM_001282388 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 17894 chr20 34314609 34314752 + 0 NA Intergenic L2c|LINE|L2 -2878 NM_001161766 191 Hs.388004 NM_000687 ENSG00000101444 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 20054 chr3 124552369 124552418 + 0 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -32266 NM_001322993 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 28249 chr8 96261857 96261929 + 0 NA promoter-TSS (NM_014754) promoter-TSS (NM_014754) 7 NM_001290225 9791 Hs.292579 NM_014754 ENSG00000156471 PTDSS1 LMHD|PSS1|PSSA phosphatidylserine synthase 1 protein-coding 10079 chr15 50686818 50686840 + 0 NA promoter-TSS (NM_001301212) promoter-TSS (NM_001301212) -14 NM_001301212 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 1534 chr1 113073064 113073211 + 0 NA promoter-TSS (NR_103777) promoter-TSS (NR_103777) -33 NM_001312686 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 27626 chr8 29262952 29263036 + 0 NA promoter-TSS (NM_015254) promoter-TSS (NM_015254) 99 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 6697 chr12 16531857 16531942 + 0 NA Intergenic Intergenic 73480 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 13102 chr17 80260839 80260969 + 0 NA promoter-TSS (NM_020954) promoter-TSS (NM_020954) 43 NM_020954 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 1915 chr1 160747209 160747215 + 0 NA intron (NM_001282590, intron 1 of 5) intron (NM_001282590, intron 1 of 5) 8155 NM_001282593 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 4523 chr10 121974777 121974881 + 0 NA intron (NM_017615, intron 1 of 10) CpG 399 NM_017615 54780 Hs.258798 NM_017615 ENSG00000107672 NSMCE4A C10orf86|NS4EA|NSE4A NSE4 homolog A, SMC5-SMC6 complex component protein-coding 16807 chr2 189393549 189393653 + 0 NA Intergenic Intergenic -47832 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 22423 chr5 40402048 40402152 + 0 NA Intergenic MIRc|SINE|MIR -277830 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 24386 chr6 31945840 31945944 + 0 NA promoter-TSS (NM_001710) promoter-TSS (NM_001710) -52 NM_001710 629 Hs.69771 NM_001710 ENSG00000243649 CFB AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2 complement factor B protein-coding 20756 chr3 180989703 180989827 + 0 NA promoter-TSS (NM_001190233) promoter-TSS (NM_001190233) 9 NR_046073 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 6183 chr11 119057147 119057261 + 0 NA promoter-TSS (NM_006389) promoter-TSS (NM_006389) 42 NM_001130991 10525 Hs.277704 NM_006389 ENSG00000149428 HYOU1 GRP-170|Grp170|HSP12A|ORP-150|ORP150 hypoxia up-regulated 1 protein-coding 23438 chr5 146203444 146203585 + 0 NA promoter-TSS (NM_018989) promoter-TSS (NM_018989) -86 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 20490 chr3 156826746 156826892 + 0 NA 5' UTR (NM_001193283, exon 1 of 5) 5' UTR (NM_001193283, exon 1 of 5) 460 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 23241 chr5 134226339 134226372 + 0 NA promoter-TSS (NM_002715) promoter-TSS (NM_002715) -96 NM_002715 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 29580 chr9 94140108 94140146 + 0 NA Intergenic Intergenic -35830 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 15592 chr2 57075369 57075473 + 0 NA Intergenic MSTB1|LTR|ERVL-MaLR -832230 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 26724 chr7 101127041 101127124 + 0 NA promoter-TSS (NM_000602) promoter-TSS (NM_000602) -7 NM_000602 5054 Hs.414795 NM_000602 ENSG00000106366 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin family E member 1 protein-coding 22183 chr5 6766596 6766700 + 0 NA Intergenic Intergenic 20660 NM_001171806 11044 Hs.481542 NM_006999 ENSG00000112941 PAPD7 LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 poly(A) RNA polymerase D7, non-canonical protein-coding 2094 chr1 175023509 175023534 + 0 NA promoter-TSS (NM_022100) promoter-TSS (NM_022100) -66 NR_037606 63931 Hs.654858 NM_022100 ENSG00000120333 MRPS14 DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 26989 chr7 129530941 129531042 + 0 NA Intergenic L1MB4|LINE|L1 28512 NM_001195243 100287482 Hs.178144 NM_001195243 ENSG00000240204 SMKR1 - small lysine rich protein 1 protein-coding 25351 chr6 151901226 151901330 + 0 NA intron (NM_001122740, intron 4 of 8) L1PBa1|LINE|L1 92171 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 28447 chr8 115219135 115219166 + 0 NA Intergenic MIRc|SINE|MIR 448862 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 3778 chr10 63553131 63553260 + 0 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -31120 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 30885 chrX 101390855 101391010 + 0 NA promoter-TSS (NM_001287344) promoter-TSS (NM_001287344) 42 NM_001199972 6173 Hs.432485 NM_021029 ENSG00000241343 RPL36A L36A|L44L|MIG6|RPL44 ribosomal protein L36a protein-coding 30601 chrX 31353226 31353330 + 0 NA intron (NM_004012, intron 32 of 50) intron (NM_004012, intron 32 of 50) -86371 NM_004016 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 24928 chr6 96305222 96305373 + 0 NA Intergenic Intergenic -216529 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 3090 chr1 242467683 242467787 + 0 NA intron (NM_152666, intron 2 of 10) intron (NM_152666, intron 2 of 10) -18253 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 16537 chr2 160205621 160205764 + 0 NA Intergenic Intergenic -5379 NM_001282388 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 29858 chr9 110814256 110814360 + 0 NA Intergenic LTR16A1|LTR|ERVL 145537 NM_001166280 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS muscle associated receptor tyrosine kinase protein-coding 18363 chr20 60249541 60249645 + 0 NA intron (NR_046099, intron 3 of 4) MIRb|SINE|MIR -58881 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 13246 chr18 7946899 7947003 + 0 NA intron (NM_001105244, intron 5 of 32) LTR79|LTR|ERVL 379635 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase, receptor type M protein-coding 22238 chr5 13783032 13783165 + 0 NA intron (NM_001369, intron 52 of 78) intron (NM_001369, intron 52 of 78) 161382 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 30213 chr9 129026637 129026804 + 0 NA intron (NM_020145, intron 1 of 10) intron (NM_020145, intron 1 of 10) 1633 NM_020145 56904 Hs.460238 NM_020145 ENSG00000148341 SH3GLB2 PP6569|PP9455|RRIG1 SH3 domain containing GRB2 like endophilin B2 protein-coding 1051 chr1 65687866 65687970 + 0 NA Intergenic Intergenic -104592 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 10897 chr16 2752318 2752381 + 0 NA promoter-TSS (NM_016333) promoter-TSS (NM_016333) 20 NM_016333 23524 Hs.433343 NM_016333 ENSG00000167978 SRRM2 300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300 serine/arginine repetitive matrix 2 protein-coding 9142 chr14 61252901 61253016 + 0 NA Intergenic Intergenic 28854 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 18347 chr20 59496027 59496164 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -81414 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 518 chr1 31170877 31171043 + 0 NA Intergenic Intergenic 68927 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C Sodium/potassium transporting ATPase interacting 1 protein-coding 12716 chr17 55162361 55162479 + 0 NA 3' UTR (NM_178509, exon 18 of 18) 3' UTR (NM_178509, exon 18 of 18) -102540 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF, PAR bZIP transcription factor protein-coding 2906 chr1 228861313 228861467 + 0 NA Intergenic Intergenic 126313 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 29473 chr9 87974740 87974890 + 0 NA promoter-TSS (NM_001039803) promoter-TSS (NM_001039803) -35 NM_178432 23552 Hs.522274 NM_012119 ENSG00000156345 CDK20 CCRK|CDCH|P42|PNQALRE cyclin dependent kinase 20 protein-coding 3221 chr10 5488850 5489081 + 0 NA Intergenic Intergenic 10605 NM_017422 51806 Hs.180142 NM_017422 ENSG00000178372 CALML5 CLSP calmodulin like 5 protein-coding 2852 chr1 226197100 226197280 + 0 NA Intergenic Intergenic -10468 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 18786 chr22 30424000 30424189 + 0 NA 3' UTR (NM_001204204, exon 10 of 10) 3' UTR (NM_001204204, exon 10 of 10) -1529 NM_016498 51537 Hs.713636 NM_016498 ENSG00000242114 MTFP1 HSPC242|MTP18 mitochondrial fission process 1 protein-coding 2991 chr1 234610964 234611115 + 0 NA Intergenic CpG -1514 NM_001077397 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 13376 chr18 29156605 29156714 + 0 NA Intergenic Intergenic -979213 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 29722 chr9 101533707 101533861 + 0 NA promoter-TSS (NM_019592) promoter-TSS (NM_019592) -65 NM_019592 56254 Hs.729085 NM_019592 ENSG00000155827 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20 protein-coding 384 chr1 24705444 24705548 + 0 NA Intergenic Intergenic -39773 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 20633 chr3 170689645 170689749 + 0 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -103623 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 7868 chr12 125983519 125983680 + 0 NA promoter-TSS (NR_034132) promoter-TSS (NR_034132) -225 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 4052 chr10 89644024 89644162 + 0 NA promoter-TSS (NM_138316) promoter-TSS (NM_138316) -202 NM_138316 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 28138 chr8 86108769 86108933 + 0 NA intron (NM_152565, intron 1 of 7) intron (NM_152565, intron 1 of 7) 9941 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 5956 chr11 101686652 101686782 + 0 NA Intergenic Plat_L3|LINE|CR1 -102789 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 13739 chr18 67516766 67516998 + 0 NA promoter-TSS (NM_032160) promoter-TSS (NM_032160) -152 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4 dermatan sulfate epimerase-like protein-coding 30412 chrUn_GL000216v2 149483 149637 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 1735 chr1 152048120 152048196 + 0 NA Intergenic Intergenic -11123 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 15433 chr2 43086603 43086697 + 0 NA Intergenic Intergenic -47107 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 12339 chr17 33235331 33235514 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 57566 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 21739 chr4 118968107 118968258 + 0 NA intron (NM_133477, intron 1 of 4) intron (NM_133477, intron 1 of 4) 79341 NM_001128934 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 5250 chr11 47426447 47426532 + 0 NA promoter-TSS (NM_002804) promoter-TSS (NM_002804) -16 NM_002804 5702 Hs.250758 NM_002804 ENSG00000165916 PSMC3 TBP1 proteasome 26S subunit, ATPase 3 protein-coding 21348 chr4 49139661 49139815 + 0 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 153096 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 2286 chr1 194658214 194658318 + 0 NA Intergenic Intergenic 1353521 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 13226 chr18 3512172 3512205 + 0 NA intron (NM_001003809, intron 7 of 9) intron (NM_001003809, intron 7 of 9) 45938 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 20705 chr3 177357476 177357631 + 0 NA Intergenic Intergenic 63111 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 15312 chr2 31414956 31415060 + 0 NA promoter-TSS (NM_000379) promoter-TSS (NM_000379) -263 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 21702 chr4 111064444 111064548 + 0 NA Intergenic Intergenic -203849 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 14908 chr2 1625474 1625480 + 0 NA Intergenic Intergenic 119070 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 25737 chr7 16420968 16421136 + 0 NA intron (NM_001101426, intron 1 of 9) CpG 270 NM_001101426 729920 Hs.636502 NM_001101417 ENSG00000214960 ISPD MDDGA7|MDDGC7|Nip|hCG_1745121 isoprenoid synthase domain containing protein-coding 8327 chr13 66635648 66635736 + 0 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -189477 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 1750 chr1 152908395 152908450 + 0 NA promoter-TSS (NM_005547) promoter-TSS (NM_005547) -141 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 5971 chr11 102306418 102306522 + 0 NA Intergenic Intergenic -10980 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 4715 chr11 3954678 3954737 + 0 NA intron (NM_001277961, intron 1 of 11) L2c|LINE|L2 98645 NR_039835 100616453 NR_039835 ENSG00000167323 MIR4687 - microRNA 4687 ncRNA 7268 chr12 73716290 73716394 + 0 NA Intergenic AluSz|SINE|Alu 557152 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LOC101928137 - uncharacterized LOC101928137 ncRNA 14589 chr19 46211302 46211406 + 0 NA intron (NR_027003, intron 1 of 5) intron (NR_027003, intron 1 of 5) 1112 NR_027003 93429 Hs.569940 NR_027003 ENSG00000268460 LOC93429 - uncharacterized LOC93429 ncRNA 27257 chr7 155070091 155070203 + 0 NA promoter-TSS (NM_024012) promoter-TSS (NM_024012) -177 NM_024012 3361 Hs.65791 NM_024012 ENSG00000157219 HTR5A 5-HT5A 5-hydroxytryptamine receptor 5A protein-coding 22562 chr5 56909938 56910068 + 0 NA promoter-TSS (NM_001323020) promoter-TSS (NM_001323020) -59 NR_136557 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 14353 chr19 33302568 33302749 + 0 NA promoter-TSS (NM_001285829) promoter-TSS (NM_001285829) -94 NM_004364 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT/enhancer binding protein alpha protein-coding 17839 chr20 31567132 31567138 + 0 NA TTS (NR_046853) TTS (NR_046853) 6128 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 981 chr1 61323810 61323914 + 0 NA intron (NM_005595, intron 3 of 9) L2b|LINE|L2 -70344 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 697 chr1 40161233 40161359 + 0 NA promoter-TSS (NM_012421) promoter-TSS (NM_012421) -73 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 29494 chr9 89310813 89310998 + 0 NA promoter-TSS (NM_001827) promoter-TSS (NM_001827) -290 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 24512 chr6 39029523 39029677 + 0 NA intron (NM_001206927, intron 92 of 92) intron (NM_001206927, intron 92 of 92) -19181 NR_136563 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 27406 chr8 12552267 12552366 + 0 NA intron (NR_047662, intron 8 of 8) L1M2|LINE|L1 113295 NR_047662 729732 Hs.322761 NR_047662 ENSG00000283674 LOC729732 - uncharacterized LOC729732 ncRNA 26080 chr7 38335800 38335878 + 0 NA Intergenic Intergenic -5738 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 16954 chr2 204145362 204145488 + 0 NA Intergenic Intergenic 208677 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T-cell costimulator protein-coding 12064 chr17 8029227 8029456 + 0 NA Intergenic Intergenic -9699 NM_001039131 247 Hs.111256 NM_001141 ENSG00000179593 ALOX15B 15-LOX-2 arachidonate 15-lipoxygenase, type B protein-coding 1010 chr1 63773951 63774055 + 0 NA promoter-TSS (NM_001083592) promoter-TSS (NM_001083592) -16 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 8377 chr13 76516213 76516317 + 0 NA Intergenic LTR78|LTR|ERV1 370140 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 9174 chr14 63164279 63164335 + 0 NA Intergenic L1MA7|LINE|L1 -40077 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 4077 chr10 92591596 92591727 + 0 NA Intergenic CpG -1407 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 11948 chr17 4187249 4187380 + 0 NA intron (NM_001257999, intron 11 of 24) intron (NM_001257999, intron 11 of 24) 43693 NM_001254755 124936 Hs.513871 NM_144611 ENSG00000167740 CYB5D2 - cytochrome b5 domain containing 2 protein-coding 13649 chr18 58850430 58850471 + 0 NA Intergenic Intergenic -12150 NM_001318726 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 12634 chr17 48915946 48916077 + 0 NA intron (NM_023079, intron 3 of 6) intron (NM_023079, intron 3 of 6) -7028 NR_135674 105371814 Hs.655254 NR_135674 ENSG00000248278 LOC105371814 - uncharacterized LOC105371814 ncRNA 25684 chr7 12403633 12403790 + 0 NA non-coding (NR_144534, exon 1 of 30) non-coding (NR_144534, exon 1 of 30) 230 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 11764 chr16 84177179 84177317 + 0 NA TTS (NM_139353) TTS (NM_139353) 9822 NM_139353 9013 Hs.153022 NM_005679 ENSG00000103168 TAF1C MGC:39976|SL1|TAFI110|TAFI95 TATA-box binding protein associated factor, RNA polymerase I subunit C protein-coding 25574 chr7 3436952 3437056 + 0 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 135556 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 20812 chr3 184185970 184186109 + 0 NA promoter-TSS (NM_018358) promoter-TSS (NM_018358) -36 NM_018358 55324 Hs.361323 NM_018358 ENSG00000161204 ABCF3 EST201864 ATP binding cassette subfamily F member 3 protein-coding 26837 chr7 112572814 112572853 + 0 NA Intergenic Intergenic -45232 NR_110160 100996249 Hs.561749 NR_110159 LOC100996249 - uncharacterized LOC100996249 ncRNA 8714 chr14 22929487 22929608 + 0 NA promoter-TSS (NM_001039619) promoter-TSS (NM_001039619) 38 NM_001282956 10419 Hs.367854 NM_006109 ENSG00000100462 PRMT5 HRMT1L5|IBP72|JBP1|SKB1|SKB1Hs protein arginine methyltransferase 5 protein-coding 3739 chr10 60473802 60473843 + 0 NA intron (NM_001204403, intron 2 of 43) Charlie16a|DNA|hAT-Charlie -83838 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 15973 chr2 96486169 96486279 + 0 NA Intergenic Intergenic 19161 NM_001285486 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 25819 chr7 21366348 21366475 + 0 NA Intergenic Intergenic -61623 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 321 chr1 21439946 21440116 + 0 NA promoter-TSS (NM_001256416) promoter-TSS (NM_001256416) -59 NM_001330381 84224 Hs.325422 NM_032264 ENSG00000142794 NBPF3 AE2 neuroblastoma breakpoint family member 3 protein-coding 5700 chr11 77506943 77507047 + 0 NA Intergenic L2a|LINE|L2 -32932 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 PAKalpha p21 (RAC1) activated kinase 1 protein-coding 14017 chr19 7395116 7395157 + 0 NA promoter-TSS (NM_015318) promoter-TSS (NM_015318) 23 NM_015318 23370 Hs.465761 NM_015318 ENSG00000104880 ARHGEF18 P114-RhoGEF Rho/Rac guanine nucleotide exchange factor 18 protein-coding 29831 chr9 109331507 109331656 + 0 NA Intergenic Intergenic -10617 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 24179 chr6 21755029 21755185 + 0 NA intron (NR_015410, intron 2 of 11) intron (NR_015410, intron 2 of 11) 88663 NR_015410 401237 Hs.712707 NR_015410 ENSG00000272168 CASC15 LINC00340 cancer susceptibility candidate 15 (non-protein coding) ncRNA 24298 chr6 29633040 29633264 + 0 NA promoter-TSS (NM_001319053) promoter-TSS (NM_001319053) -17 NM_001470 2550 Hs.167017 NM_001470 ENSG00000204681 GABBR1 GABABR1|GABBR1-3|GB1|GPRC3A gamma-aminobutyric acid type B receptor subunit 1 protein-coding 18993 chr22 43955339 43955528 + 0 NA promoter-TSS (NM_015380) promoter-TSS (NM_015380) 52 NM_015380 25813 Hs.505824 NM_015380 ENSG00000100347 SAMM50 CGI-51|OMP85|SAM50|TOB55|TRG-3|YNL026W SAMM50 sorting and assembly machinery component protein-coding 7154 chr12 57112322 57112426 + 0 NA promoter-TSS (NM_003153) promoter-TSS (NM_003153) -961 NM_001178078 6778 Hs.524518 NM_003153 ENSG00000166888 STAT6 D12S1644|IL-4-STAT|STAT6B|STAT6C signal transducer and activator of transcription 6 protein-coding 11421 chr16 57341809 57341957 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -16900 NM_002990 6367 Hs.534347 NM_002990 ENSG00000102962 CCL22 A-152E5.1|ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1 C-C motif chemokine ligand 22 protein-coding 30187 chr9 128504554 128504706 + 0 NA promoter-TSS (NM_001499) promoter-TSS (NM_001499) -62 NM_001499 2733 Hs.522418 NM_001499 ENSG00000119392 GLE1 GLE1L|LCCS|LCCS1|hGLE1 GLE1, RNA export mediator protein-coding 20013 chr3 121019283 121019323 + 0 NA intron (NM_014980, intron 3 of 27) L1PBa|LINE|L1 -30337 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 2422 chr1 202958287 202958444 + 0 NA promoter-TSS (NM_001290557) promoter-TSS (NM_001290557) 31 NM_001290557 51094 Hs.5298 NM_015999 ENSG00000159346 ADIPOR1 ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A adiponectin receptor 1 protein-coding 17928 chr20 35455139 35455291 + 0 NA promoter-TSS (NM_007186) promoter-TSS (NM_007186) -187 NM_007186 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1 centrosomal protein 250 protein-coding 5977 chr11 102854088 102854241 + 0 NA Intergenic Intergenic -10475 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 19431 chr3 44861759 44861923 + 0 NA promoter-TSS (NR_030290) promoter-TSS (NR_030290) -47 NR_030290 693149 NR_030290 ENSG00000169964 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 1590 chr1 117605821 117605966 + 0 NA promoter-TSS (NR_121626) promoter-TSS (NR_121626) -89 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 FAM46C - family with sequence similarity 46 member C protein-coding 14963 chr2 9287834 9287938 + 0 NA intron (NM_003887, intron 2 of 27) intron (NM_003887, intron 2 of 27) 81121 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 1652 chr1 147243008 147243160 + 0 NA intron (NM_001256338, intron 1 of 16) CpG 443 NM_001256337 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 14767 chr19 53867516 53867703 + 0 NA promoter-TSS (NM_001020819) promoter-TSS (NM_001020819) -256 NM_001290191 91663 Hs.380906 NM_138373 ENSG00000179820 MYADM SB135 myeloid associated differentiation marker protein-coding 4816 chr11 10489242 10489378 + 0 NA intron (NM_001025389, intron 6 of 14) intron (NM_001025389, intron 6 of 14) 19016 NR_039705 100616263 NR_039705 ENSG00000255823 MIR4485 mir-4485 microRNA 4485 ncRNA 19566 chr3 53882147 53882233 + 0 NA promoter-TSS (NM_022899) promoter-TSS (NM_022899) 12 NM_022899 93973 Hs.412186 NM_022899 ENSG00000113812 ACTR8 ARP8|INO80N|hArp8 ARP8 actin-related protein 8 homolog protein-coding 9259 chr14 67964647 67964751 + 0 NA intron (NM_002877, intron 7 of 10) intron (NM_002877, intron 7 of 10) 141107 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 15452 chr2 43773979 43774134 + 0 NA promoter-TSS (NM_016008) promoter-TSS (NM_016008) 17 NM_015522 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3|SRTD15 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 30828 chrX 72686254 72686415 + 0 NA intron (NM_002637, intron 4 of 31) L1ME4b|LINE|L1 -2615 NR_110391 101928259 Hs.666679 NR_110391 ENSG00000231944 PHKA1-AS1 - PHKA1 antisense RNA 1 ncRNA 19216 chr3 16069174 16069294 + 0 NA Intergenic Intergenic -105088 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 18118 chr20 46683989 46684093 + 0 NA TTS (NM_033550) TTS (NM_033550) 444 NM_001011554 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 19893 chr3 112731402 112731548 + 0 NA Intergenic MER39|LTR|ERV1 17844 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 23989 chr6 8085166 8085320 + 0 NA intron (NM_004280, intron 3 of 3) AluJb|SINE|Alu 1290 NR_003703 100124533 NR_003703 SCARNA27 - small Cajal body-specific RNA 27 ncRNA 760 chr1 43367771 43367875 + 0 NA promoter-TSS (NM_001256399) promoter-TSS (NM_001256399) -85 NM_001256399 64834 Hs.25597 NM_022821 ENSG00000066322 ELOVL1 CGI-88|Ssc1 ELOVL fatty acid elongase 1 protein-coding 16433 chr2 147278987 147279091 + 0 NA Intergenic Intergenic -565478 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 5459 chr11 65111784 65111888 + 0 NA promoter-TSS (NR_102367) promoter-TSS (NR_102367) -18 NR_102367 7108 Hs.31130 NM_003273 ENSG00000149809 TM7SF2 ANG1|DHCR14A|NET47 transmembrane 7 superfamily member 2 protein-coding 863 chr1 51519173 51519357 + 0 NA promoter-TSS (NM_001981) promoter-TSS (NM_001981) 58 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 24608 chr6 44058555 44058753 + 0 NA intron (NR_125864, intron 1 of 4) intron (NR_125864, intron 1 of 4) 15998 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 7815 chr12 122952418 122952566 + 0 NA intron (NM_001243013, intron 2 of 10) intron (NM_001243013, intron 2 of 10) 14017 NM_203444 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 4975 chr11 19370286 19370407 + 0 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 19622 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13341 chr18 24271649 24271780 + 0 NA 5' UTR (NM_018030, exon 1 of 14) 5' UTR (NM_018030, exon 1 of 14) 518 NM_018030 114876 Hs.370725 NM_018030 ENSG00000141447 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein like 1A protein-coding 24219 chr6 26156278 26156407 + 0 NA promoter-TSS (NM_005321) promoter-TSS (NM_005321) 11 NM_005321 3008 Hs.248133 NM_005321 ENSG00000168298 HIST1H1E H1.4|H1E|H1F4|H1s-4|dJ221C16.5 histone cluster 1 H1 family member e protein-coding 1745 chr1 152566782 152566854 + 0 NA promoter-TSS (NM_178435) promoter-TSS (NM_178435) -65 NM_178435 353145 Hs.490208 NM_178435 ENSG00000185966 LCE3E LEP17 late cornified envelope 3E protein-coding 27034 chr7 132318850 132319042 + 0 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 58085 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 16928 chr2 201642727 201642831 + 0 NA 5' UTR (NM_152388, exon 1 of 12) 5' UTR (NM_152388, exon 1 of 12) 165 NM_152388 65062 Hs.12319 NM_152388 ENSG00000155755 TMEM237 ALS2CR4|JBTS14 transmembrane protein 237 protein-coding 12606 chr17 47810673 47810674 + 0 NA intron (NM_145798, intron 17 of 22) intron (NM_145798, intron 17 of 22) 11108 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 30003 chr9 118595853 118595957 + 0 NA Intergenic Intergenic 773556 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 19590 chr3 57972868 57972927 + 0 NA Intergenic Intergenic -35503 NM_001457 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 16526 chr2 158973270 158973374 + 0 NA intron (NM_033394, intron 1 of 26) intron (NM_033394, intron 1 of 26) 4688 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 14942 chr2 7097335 7097439 + 0 NA Intergenic Intergenic -19507 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 21900 chr4 151099375 151099520 + 0 NA promoter-TSS (NM_001006) promoter-TSS (NM_001006) -126 NM_001006 6189 Hs.356572 NM_001006 ENSG00000145425 RPS3A FTE1|MFTL|S3A ribosomal protein S3A protein-coding 3702 chr10 56361319 56361432 + 0 NA promoter-TSS (NM_032997) promoter-TSS (NM_032997) -102 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 11245 chr16 30814447 30814551 + 0 NA Intergenic CpG -27280 NM_001080417 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 16920 chr2 201071594 201071775 + 0 NA promoter-TSS (NM_001321619) promoter-TSS (NM_001321619) -13 NM_001321618 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 282 chr1 19361304 19361454 + 0 NA intron (NM_001206540, intron 4 of 9) intron (NM_001206540, intron 4 of 9) 49133 NM_001040125 54896 Hs.647620 NM_017765 ENSG00000040487 PQLC2 - PQ loop repeat containing 2 protein-coding 30709 chrX 49163913 49164017 + 0 NA intron (NM_024859, intron 2 of 5) CpG-29684 1122 NM_001099681 79917 Hs.193170 NM_024859 ENSG00000269313 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 5489 chr11 65662991 65663095 + 0 NA promoter-TSS (NM_001145138) promoter-TSS (NM_001145138) -71 NM_001243985 5970 Hs.502875 NM_021975 ENSG00000173039 RELA NFKB3|p65 RELA proto-oncogene, NF-kB subunit protein-coding 19068 chr22_KI270733v1_random 151461 151612 + 0 NA Intergenic Intergenic -18679 NR_128714 103504728 NR_128714 ENSG00000264063 MIR3687-2 hsa-mir-3687-2 microRNA 3687-2 ncRNA 18200 chr20 50794939 50795043 + 0 NA promoter-TSS (NM_001010974) promoter-TSS (NM_001010974) 97 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 16771 chr2 181977784 181977888 + 0 NA intron (NR_048567, intron 2 of 4) MLT1G|LTR|ERVL-MaLR -7988 NM_001080545 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 13926 chr19 3276551 3276655 + 0 NA intron (NR_033342, intron 4 of 12) intron (NR_033342, intron 4 of 12) 51118 NR_033342 60680 Hs.655747 NM_021938 ENSG00000161082 CELF5 BRUNOL-5|BRUNOL5|CELF-5 CUGBP, Elav-like family member 5 protein-coding 28198 chr8 93754733 93754869 + 0 NA promoter-TSS (NR_024522) promoter-TSS (NR_024522) -43 NM_153704 91147 Hs.116240 NM_153704 ENSG00000164953 TMEM67 JBTS6|MECKELIN|MKS3|NPHP11|TNEM67 transmembrane protein 67 protein-coding 18209 chr20 51211319 51211443 + 0 NA Intergenic L1ME3|LINE|L1 -188243 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 7585 chr12 106301748 106301903 + 0 NA promoter-TSS (NM_001286262) promoter-TSS (NM_001286262) -966 NM_001286262 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 12086 chr17 8630922 8631026 + 0 NA promoter-TSS (NM_005964) promoter-TSS (NM_005964) -213 NM_001256012 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 4630 chr10 132096377 132096481 + 0 NA intron (NM_001323090, intron 1 of 23) intron (NM_001323090, intron 1 of 23) 30462 NM_001323090 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 2372 chr1 201435753 201435833 + 0 NA Intergenic Intergenic -14047 NM_003281 7135 Hs.320890 NM_003281 ENSG00000159173 TNNI1 SSTNI|TNN1 troponin I1, slow skeletal type protein-coding 24893 chr6 87421695 87421833 + 0 NA intron (NM_001031743, intron 7 of 12) intron (NM_001031743, intron 7 of 12) 13792 NM_001031743 154313 Hs.82921 NM_178823 ENSG00000213204 CFAP206 C6orf165|dJ382I10.1 cilia and flagella associated protein 206 protein-coding 9992 chr15 43493217 43493330 + 0 NA promoter-TSS (NM_001141980) promoter-TSS (NM_001141980) -117 NM_001141979 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|TP53|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 11125 chr16 22297734 22297814 + 0 NA intron (NM_001258035, intron 1 of 19) CpG 399 NR_047581 55718 Hs.460298 NM_018119 ENSG00000058600 POLR3E RPC5|SIN RNA polymerase III subunit E protein-coding 15897 chr2 85288545 85288699 + 0 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 39674 NM_001206840 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 30414 chrUn_GL000219v1 42516 42630 + 0 NA Intergenic Intergenic 57069 NR_027436 283788 Hs.657131 NR_027436 LOC283788 - FSHD region gene 1 pseudogene pseudo 577 chr1 33099348 33099525 + 0 NA intron (NM_001301823, intron 7 of 8) intron (NM_001301823, intron 7 of 8) 17258 NM_001301826 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 24954 chr6 104402584 104402587 + 0 NA Intergenic Intergenic 456961 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 8265 chr13 49607171 49607275 + 0 NA Intergenic Intergenic -21076 NM_138450 115761 Hs.558599 NM_138450 ENSG00000152213 ARL11 ARLTS1 ADP ribosylation factor like GTPase 11 protein-coding 14433 chr19 38930773 38930934 + 0 NA promoter-TSS (NM_001145901) promoter-TSS (NM_001145901) 43 NM_001145901 54938 Hs.709416 NM_017827 ENSG00000104835 SARS2 SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS seryl-tRNA synthetase 2, mitochondrial protein-coding 16287 chr2 127859746 127859850 + 0 NA Intergenic Intergenic -1643 NM_004805 5433 Hs.715348 NM_004805 ENSG00000144231 POLR2D HSRBP4|HSRPB4|RBP4|RPB16 RNA polymerase II subunit D protein-coding 26417 chr7 74254416 74254554 + 0 NA promoter-TSS (NM_001278791) promoter-TSS (NM_001278791) -27 NM_181471 5982 Hs.647062 NM_002914 ENSG00000049541 RFC2 RFC40 replication factor C subunit 2 protein-coding 16098 chr2 108923181 108923329 + 0 NA intron (NM_022336, intron 5 of 11) intron (NM_022336, intron 5 of 11) 66117 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 24288 chr6 28897199 28897303 + 0 NA TTS (NR_104117).5 TTS (NR_104117).5 721 NR_104117 414760 Hs.211005 NR_104117 ENSG00000224157 HCG14 dJ111M5.4 HLA complex group 14 (non-protein coding) ncRNA 13402 chr18 31685149 31685291 + 0 NA promoter-TSS (NM_001330570) promoter-TSS (NM_001330570) -497 NM_004775 9331 Hs.591063 NM_004775 ENSG00000118276 B4GALT6 B4Gal-T6|beta4Gal-T6 beta-1,4-galactosyltransferase 6 protein-coding 643 chr1 37534596 37534707 + 0 NA 3' UTR (NM_024700, exon 4 of 4) 3' UTR (NM_024700, exon 4 of 4) 19693 NM_024700 79753 Hs.47232 NM_024700 ENSG00000163877 SNIP1 PMRED Smad nuclear interacting protein 1 protein-coding 29294 chr9 76459135 76459286 + 0 NA promoter-TSS (NM_001097633) promoter-TSS (NM_001097633) 58 NM_001097633 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1, core 2 protein-coding 29988 chr9 116737131 116737235 + 0 NA intron (NM_014010, intron 12 of 21) intron (NM_014010, intron 12 of 21) 49881 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 29981 chr9 116377560 116377664 + 0 NA exon (NM_002581, exon 20 of 22) exon (NM_002581, exon 20 of 22) 22994 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 19108 chr3 5389154 5389337 + 0 NA Intergenic L1MC3|LINE|L1 -138990 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 6193 chr11 119334401 119334519 + 0 NA promoter-TSS (NM_032015) promoter-TSS (NM_032015) -40 NM_032015 79102 Hs.524084 NM_032015 ENSG00000173456 RNF26 - ring finger protein 26 protein-coding 1120 chr1 72282756 72282921 + 0 NA promoter-TSS (NM_173808) promoter-TSS (NM_173808) -244 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 20140 chr3 129908495 129908626 + 0 NA non-coding (NR_037893, exon 3 of 3) non-coding (NR_037893, exon 3 of 3) 14689 NR_037893 100507032 Hs.529562 NR_037893 ENSG00000271270 TMCC1-AS1 - TMCC1 antisense RNA 1 (head to head) ncRNA 12284 chr17 29180379 29180466 + 0 NA promoter-TSS (NM_078471) promoter-TSS (NM_078471) -33 NM_203318 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 13021 chr17 75784603 75784753 + 0 NA promoter-TSS (NR_038131) promoter-TSS (NR_038131) -71 NR_039892 100616282 NR_039892 ENSG00000132475 MIR4738 - microRNA 4738 ncRNA 26357 chr7 66740589 66740693 + 0 NA promoter-TSS (NM_001287062) promoter-TSS (NM_001287062) -15 NM_014504 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 20853 chr3 185813717 185813821 + 0 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 7362 NM_001291874 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 7474 chr12 96489502 96489630 + 0 NA promoter-TSS (NM_001306084) promoter-TSS (NM_001306084) -5 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 26534 chr7 86469781 86469885 + 0 NA Intergenic Intergenic -174081 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 23243 chr5 134279789 134279865 + 0 NA Intergenic (AAAAC)n|Simple_repeat|Simple_repeat -53568 NM_002715 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 17530 chr20 5654737 5654853 + 0 NA Intergenic Intergenic -43769 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 20197 chr3 134357969 134358073 + 0 NA intron (NM_016201, intron 9 of 9) intron (NM_016201, intron 9 of 9) 9841 NR_106885 102466744 NR_106885 ENSG00000277723 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 2092 chr1 174968863 174968928 + 0 NA intron (NM_001243764, intron 1 of 6) intron (NM_001243764, intron 1 of 6) 4127 NM_001243764 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 1251 chr1 87718544 87718648 + 0 NA Intergenic Intergenic -346941 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 30419 chrUn_GL000224v1 8170 8321 + 0 NA Intergenic MER21B|LTR|ERVL -94258 NR_135481 100505874 Hs.559790 NR_135481 LOC100505874 - uncharacterized LOC100505874 ncRNA 3904 chr10 73893505 73893609 + 0 NA Intergenic Intergenic -17544 NM_002658 5328 Hs.77274 NM_002658 ENSG00000122861 PLAU ATF|BDPLT5|QPD|UPA|URK|u-PA plasminogen activator, urokinase protein-coding 879 chr1 52726397 52726587 + 0 NA promoter-TSS (NM_024646) promoter-TSS (NM_024646) 33 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 24203 chr6 25279360 25279385 + 0 NA promoter-TSS (NM_017640) promoter-TSS (NM_017640) -56 NM_017640 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 21349 chr4 49140481 49140628 + 0 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 153912 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 13759 chr18 70415980 70416084 + 0 NA Intergenic Intergenic -31441 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 16313 chr2 130241189 130241307 + 0 NA Intergenic L2c|LINE|L2 -42787 NM_207312 112714 Hs.433336 NM_207312 ENSG00000152086 TUBA3E - tubulin alpha 3e protein-coding 23846 chr5 181206756 181206890 + 0 NA Intergenic Intergenic -1530 NM_203293 81786 Hs.487412 NM_033342 ENSG00000146054 TRIM7 GNIP|RNF90 tripartite motif containing 7 protein-coding 30674 chrX 47650686 47650831 + 0 NA promoter-TSS (NM_005229) promoter-TSS (NM_005229) -154 NM_001257168 2002 Hs.181128 NM_005229 ENSG00000126767 ELK1 - ELK1, ETS transcription factor protein-coding 28006 chr8 71146124 71146214 + 0 NA Intergenic MER91A|DNA|hAT-Tip100 210342 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 19242 chr3 20186221 20186386 + 0 NA promoter-TSS (NM_001012410) promoter-TSS (NM_001012410) -70 NM_001012410 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 1444 chr1 108016584 108016688 + 0 NA Intergenic Intergenic -51713 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 25209 chr6 138014048 138014171 + 0 NA Intergenic Intergenic 93414 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 24867 chr6 84227859 84227884 + 0 NA promoter-TSS (NM_001286206) promoter-TSS (NM_001286206) -236 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 8705 chr14 22781667 22781673 + 0 NA intron (NM_001126106, intron 3 of 10) intron (NM_001126106, intron 3 of 10) 15148 NM_005015 5018 Hs.151134 NM_005015 ENSG00000155463 OXA1L OXA1 OXA1L, mitochondrial inner membrane protein protein-coding 23722 chr5 172407987 172408091 + 0 NA intron (NM_001017995, intron 2 of 12) intron (NM_001017995, intron 2 of 12) 46484 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 17803 chr20 24773827 24773931 + 0 NA Intergenic Intergenic -175351 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 23407 chr5 142770262 142770412 + 0 NA promoter-TSS (NM_001135608) promoter-TSS (NM_001135608) -390 NM_015071 23092 Hs.654668 NM_015071 ENSG00000145819 ARHGAP26 GRAF|GRAF1|OPHN1L|OPHN1L1 Rho GTPase activating protein 26 protein-coding 21735 chr4 118353047 118353077 + 0 NA promoter-TSS (NM_003619) promoter-TSS (NM_003619) -295 NM_003619 8492 Hs.445857 NM_003619 ENSG00000164099 PRSS12 BSSP-3|BSSP3|MRT1 protease, serine 12 protein-coding 28217 chr8 94613091 94613119 + 0 NA Intergenic Intergenic 26362 NR_034034 100288748 Hs.608210 NR_034034 ENSG00000261437 LOC100288748 - uncharacterized LOC100288748 ncRNA 12261 chr17 28552611 28552715 + 0 NA promoter-TSS (NM_005148) promoter-TSS (NM_005148) 0 NM_001330166 9094 Hs.410455 NM_005148 ENSG00000109103 UNC119 HRG4|IMD13|POC7|POC7A unc-119 lipid binding chaperone protein-coding 20051 chr3 124033191 124033348 + 0 NA Intergenic CpG -41099 NR_133917 54763 Hs.567516 NM_017578 ENSG00000065371 ROPN1 CT91|ODF6|RHPNAP1|ROPN1A|ropporin rhophilin associated tail protein 1 protein-coding 21319 chr4 42654720 42654834 + 0 NA intron (NM_006095, intron 1 of 36) MLT1M|LTR|ERVL-MaLR 2328 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 21237 chr4 22268798 22268895 + 0 NA Intergenic L1PB1|LINE|L1 70820 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 19542 chr3 52198054 52198099 + 0 NA promoter-TSS (NM_001304443) promoter-TSS (NM_001304443) -7 NM_001304444 211 Hs.476308 NM_000688 ENSG00000023330 ALAS1 ALAS|ALAS-H|ALAS3|ALASH|MIG4 5'-aminolevulinate synthase 1 protein-coding 4616 chr10 130127899 130128028 + 0 NA Intergenic Intergenic -8412 NM_006541 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 11905 chr17 1989238 1989342 + 0 NA intron (NM_178568, intron 1 of 1) L3|LINE|CR1 -28426 NR_135642 105371485 Hs.655867 NR_135642 ENSG00000228133 LOC105371485 - uncharacterized LOC105371485 ncRNA 13523 chr18 48133805 48133943 + 0 NA intron (NM_001318841, intron 3 of 4) intron (NM_001318841, intron 3 of 4) 3435 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 23129 chr5 125357747 125357898 + 0 NA intron (NR_109882, intron 5 of 5) L1PB1|LINE|L1 -135439 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 13188 chr17 83109844 83110025 + 0 NA Intergenic Intergenic 30243 NM_001004431 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 13987 chr19 5828201 5828340 + 0 NA TTS (NM_004558) TTS (NM_004558) 4468 NM_004558 4902 Hs.234775 NM_004558 ENSG00000171119 NRTN NTN neurturin protein-coding 15499 chr2 47016618 47016722 + 0 NA intron (NM_020458, intron 11 of 19) intron (NM_020458, intron 11 of 19) -74815 NM_001171511 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 306 chr1 20496272 20496376 + 0 NA Intergenic Intergenic -10089 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 23949 chr6 6687283 6687387 + 0 NA Intergenic Intergenic -64509 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 23921 chr6 4021181 4021361 + 0 NA promoter-TSS (NM_003913) promoter-TSS (NM_003913) -64 NM_003913 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 7095 chr12 54680492 54680635 + 0 NA Intergenic Intergenic -32070 NM_053283 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 18890 chr22 38181805 38181912 + 0 NA promoter-TSS (NM_001004426) promoter-TSS (NM_001004426) -29 NM_001199562 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 11840 chr16 89241256 89241398 + 0 NA Intergenic LTR55|LTR|ERVL? 23624 NM_182531 197320 Hs.647385 NM_182531 ENSG00000170100 ZNF778 - zinc finger protein 778 protein-coding 25502 chr6 170124989 170125093 + 0 NA Intergenic MER117|DNA|hAT-Charlie -35601 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 29277 chr9 76027615 76027719 + 0 NA intron (NM_001190482, intron 5 of 36) intron (NM_001190482, intron 5 of 36) 137023 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 26451 chr7 76318048 76318202 + 0 NA Intergenic CpG 15567 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 16606 chr2 166411289 166411393 + 0 NA intron (NR_045628, intron 23 of 25) MER44C|DNA|TcMar-Tigger -35354 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 4352 chr10 110774310 110774431 + 0 NA intron (NM_001134363, intron 1 of 13) intron (NM_001134363, intron 1 of 13) 96534 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 15193 chr2 25618838 25618921 + 0 NA intron (NM_001256308, intron 3 of 17) intron (NM_001256308, intron 3 of 17) 31343 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 26385 chr7 72828119 72828273 + 0 NA promoter-TSS (NM_001145440) promoter-TSS (NM_001145440) 38 NM_001145440 441250 Hs.488614 NM_001145440 ENSG00000277149 TYW1B LINC00069|NCRNA00069|RSAFD2 tRNA-yW synthesizing protein 1 homolog B protein-coding 28930 chr9 13942891 13942995 + 0 NA intron (NR_038194, intron 1 of 2) MER44B|DNA|TcMar-Tigger 14972 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 22288 chr5 17181186 17181290 + 0 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -35585 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 134 chr1 9627069 9627181 + 0 NA Intergenic CpG -24607 NM_005026 5293 Hs.518451 NM_005026 ENSG00000171608 PIK3CD APDS|IMD14|P110DELTA|PI3K|p110D phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta protein-coding 26089 chr7 39465127 39465231 + 0 NA TTS (NM_001166018) TTS (NM_001166018) -58833 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 4732 chr11 5550836 5550940 + 0 NA Intergenic Intergenic -5365 NM_001005289 390067 Hs.554540 NM_001005289 ENSG00000181616 OR52H1 OR11-41|OR11-45 olfactory receptor family 52 subfamily H member 1 protein-coding 3290 chr10 12129530 12129694 + 0 NA promoter-TSS (NM_001142628) promoter-TSS (NM_001142628) -29 NM_018144 55176 Hs.112955 NM_018144 ENSG00000065665 SEC61A2 - Sec61 translocon alpha 2 subunit protein-coding 17381 chr2 240025293 240025469 + 0 NA promoter-TSS (NR_136158) promoter-TSS (NR_136158) 21 NM_001322020 4705 Hs.277677 NM_004544 ENSG00000130414 NDUFA10 CI-42KD|CI-42k NADH:ubiquinone oxidoreductase subunit A10 protein-coding 19786 chr3 102163172 102163176 + 0 NA promoter-TSS (NR_135549) promoter-TSS (NR_135549) -531 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 22487 chr5 50301005 50301109 + 0 NA Intergenic Intergenic 140343 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 29340 chr9 79478450 79478582 + 0 NA Intergenic Intergenic -93257 NM_001282749 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 10596 chr15 84600901 84601057 + 0 NA promoter-TSS (NM_017894) promoter-TSS (NM_017894) -39 NM_181877 54993 Hs.594023 NM_017894 ENSG00000176371 ZSCAN2 ZFP29|ZNF854 zinc finger and SCAN domain containing 2 protein-coding 29744 chr9 105558035 105558182 + 0 NA promoter-TSS (NM_006731) promoter-TSS (NM_006731) -22 NM_001079802 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 21269 chr4 26857634 26857822 + 0 NA Intergenic CpG 2516 NR_134675 105374546 Hs.548859 NR_134673 LOC105374546 - uncharacterized LOC105374546 ncRNA 6868 chr12 38905663 38905767 + 0 NA promoter-TSS (NM_153634) promoter-TSS (NM_153634) -97 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 17740 chr20 20548751 20548913 + 0 NA intron (NM_020343, intron 23 of 39) intron (NM_020343, intron 23 of 39) 163791 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 15540 chr2 53397187 53397291 + 0 NA Intergenic L1MB2|LINE|L1 -370544 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 29820 chr9 109065459 109065563 + 0 NA intron (NM_032012, intron 9 of 17) intron (NM_032012, intron 9 of 17) -19213 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 10012 chr15 44711385 44711535 + 0 NA promoter-TSS (NM_004048) promoter-TSS (NM_004048) -27 NM_004048 567 Hs.534255 NM_004048 ENSG00000166710 B2M IMD43 beta-2-microglobulin protein-coding 9001 chr14 52125144 52125248 + 0 NA Intergenic Intergenic -55968 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 21572 chr4 88612415 88612519 + 0 NA intron (NM_014606, intron 3 of 25) intron (NM_014606, intron 3 of 25) 20044 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 15773 chr2 70616321 70616452 + 0 NA Intergenic Intergenic -62371 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 10714 chr15 90954826 90954930 + 0 NA promoter-TSS (NM_001017919) promoter-TSS (NM_001017919) 2 NM_033544 91433 Hs.655895 NM_033544 ENSG00000166965 RCCD1 - RCC1 domain containing 1 protein-coding 23591 chr5 155532814 155532850 + 0 NA Intergenic L2c|LINE|L2 519077 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 16545 chr2 160352662 160352801 + 0 NA intron (NM_016836, intron 2 of 13) Charlie15b|DNA|hAT-Charlie 55151 NR_039946 100616364 NR_039946 ENSG00000153250 MIR4785 mir-4785 microRNA 4785 ncRNA 5201 chr11 43831010 43831181 + 0 NA intron (NM_016142, intron 7 of 10) intron (NM_016142, intron 7 of 10) -49712 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 4131 chr10 96073921 96074025 + 0 NA intron (NR_134322, intron 2 of 3) intron (NR_134322, intron 2 of 3) -9574 NR_036113 100422892 NR_036113 ENSG00000266407 MIR3157 mir-3157 microRNA 3157 ncRNA 1377 chr1 97937997 97938132 + 0 NA Intergenic Intergenic -17005 NM_000110 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 11275 chr16 34592661 34592813 + 0 NA Intergenic (TTCCATTCGAG)n|Simple_repeat|Simple_repeat -432701 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 27550 chr8 24218821 24218994 + 0 NA Intergenic Intergenic -75133 NM_014265 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 26886 chr7 116781050 116781174 + 0 NA intron (NM_001127500, intron 17 of 20) MER74A|LTR|ERVL -81397 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line alpha subunit 2 protein-coding 7175 chr12 57941553 57941743 + 0 NA 5' UTR (NM_001320408, exon 1 of 6) 5' UTR (NM_001320408, exon 1 of 6) 144 NM_001320408 91419 Hs.61188 NM_033276 ENSG00000166896 ATP23 KUB3|XRCC6BP1 ATP23 metallopeptidase and ATP synthase assembly factor homolog protein-coding 4663 chr11 534715 534819 + 0 NA intron (NM_176795, intron 1 of 5) CpG 800 NM_176795 3265 Hs.37003 NM_005343 ENSG00000174775 HRAS C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras HRas proto-oncogene, GTPase protein-coding 29028 chr9 32573120 32573260 + 0 NA promoter-TSS (NM_001199987) promoter-TSS (NM_001199987) -6 NM_001199987 4712 Hs.493668 NM_002493 ENSG00000165264 NDUFB6 B17|CI NADH:ubiquinone oxidoreductase subunit B6 protein-coding 185 chr1 12588271 12588375 + 0 NA intron (NM_004753, intron 1 of 5) MIR|SINE|MIR 8073 NM_001324370 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 13592 chr18 51614116 51614293 + 0 NA Intergenic Intergenic 222162 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 25367 chr6 153328319 153328439 + 0 NA Intergenic AluSz|SINE|Alu -92098 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 5547 chr11 67239828 67240035 + 0 NA promoter-TSS (NM_001256405) promoter-TSS (NM_001256405) -104 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 26281 chr7 51315509 51315653 + 0 NA intron (NM_001287438, intron 1 of 7) intron (NM_001287438, intron 1 of 7) 1280 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 11179 chr16 28211935 28211984 + 0 NA promoter-TSS (NM_015171) promoter-TSS (NM_015171) -41 NM_015171 23214 Hs.460468 NM_015171 ENSG00000169180 XPO6 EXP6|RANBP20 exportin 6 protein-coding 13053 chr17 77088686 77088762 + 0 NA promoter-TSS (NR_027058) promoter-TSS (NR_027058) 81 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 4 chr1 778638 778786 + 0 NA promoter-TSS (NR_033908) promoter-TSS (NR_033908) -24 NR_033908 100288069 Hs.527521 NR_033908 LOC100288069 - uncharacterized LOC100288069 ncRNA 17569 chr20 10040231 10040335 + 0 NA intron (NM_198798, intron 2 of 9) intron (NM_198798, intron 2 of 9) 5284 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 21004 chr3 193853608 193853735 + 0 NA Intergenic Intergenic 140567 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 30689 chrX 48696628 48696657 + 0 NA promoter-TSS (NM_003173) promoter-TSS (NM_003173) -91 NM_003173 6839 Hs.522639 NM_003173 ENSG00000101945 SUV39H1 H3-K9-HMTase 1|KMT1A|MG44|SUV39H suppressor of variegation 3-9 homolog 1 protein-coding 25099 chr6 124792509 124792613 + 0 NA intron (NM_001040214, intron 5 of 6) intron (NM_001040214, intron 5 of 6) -169984 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 19296 chr3 29923158 29923248 + 0 NA intron (NM_001003793, intron 10 of 14) intron (NM_001003793, intron 10 of 14) 10953 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 6942 chr12 47863625 47863768 + 0 NA intron (NM_001017536, intron 4 of 9) intron (NM_001017536, intron 4 of 9) 41335 NM_001017536 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D (1,25- dihydroxyvitamin D3) receptor protein-coding 127 chr1 9162895 9163048 + 0 NA intron (NR_132742, intron 1 of 1) intron (NR_132742, intron 1 of 1) -11194 NR_029610 407040 NR_029610 ENSG00000228526 MIR34A MIRN34A|miRNA34A|mir-34|mir-34a microRNA 34a ncRNA 16405 chr2 142903856 142904006 + 0 NA intron (NM_001199241, intron 3 of 14) HERV17-int|LTR|ERV1 26305 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU kynureninase protein-coding 19736 chr3 98593862 98593862 + 0 NA promoter-TSS (NM_000097) promoter-TSS (NM_000097) -251 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 15561 chr2 54673809 54673884 + 0 NA Intergenic Intergenic -51166 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - echinoderm microtubule associated protein like 6 protein-coding 10618 chr15 85608030 85608134 + 0 NA intron (NM_007200, intron 8 of 36) intron (NM_007200, intron 8 of 36) -11868 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 21129 chr4 3385661 3385666 + 0 NA intron (NM_198227, intron 1 of 15) intron (NM_198227, intron 1 of 15) 15666 NM_198227 6002 Hs.527061 NM_002926 ENSG00000159788 RGS12 - regulator of G-protein signaling 12 protein-coding 15963 chr2 96010431 96010583 + 0 NA promoter-TSS (NR_003698) promoter-TSS (NR_003698) -44 NR_003698 729234 Hs.720108 NR_003698 ENSG00000231584 FAHD2CP - fumarylacetoacetate hydrolase domain containing 2C, pseudogene pseudo 23566 chr5 153629164 153629309 + 0 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 137064 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 6497 chr12 6200303 6200407 + 0 NA promoter-TSS (NM_001769) promoter-TSS (NM_001769) 39 NM_001769 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 5759 chr11 83286007 83286137 + 0 NA 5' UTR (NM_001286117, exon 1 of 9) 5' UTR (NM_001286117, exon 1 of 9) 335 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 11042 chr16 14285787 14285921 + 0 NA Intergenic CpG -16434 NR_132983 100129781 Hs.190748 NR_132983 MIR193BHG - MIR193B host gene ncRNA 9997 chr15 43776948 43777052 + 0 NA promoter-TSS (NM_001199877) promoter-TSS (NM_001199877) -96 NM_001199877 10169 Hs.424126 NM_005770 ENSG00000140264 SERF2 4F5REL|FAM2C|H4F5REL|HsT17089 small EDRK-rich factor 2 protein-coding 11870 chr17 694284 694447 + 0 NA intron (NM_001128159, intron 4 of 21) intron (NM_001128159, intron 4 of 21) 20491 NM_001128159 55275 Hs.461819 NM_018289 ENSG00000141252 VPS53 HCCS1|PCH2E|hVps53L|pp13624 VPS53, GARP complex subunit protein-coding 21537 chr4 84870521 84870625 + 0 NA intron (NM_014991, intron 3 of 67) L1MCa|LINE|L1 95818 NM_014991 23001 Hs.480116 NM_014991 ENSG00000163625 WDFY3 ALFY|ZFYVE25 WD repeat and FYVE domain containing 3 protein-coding 12637 chr17 49192865 49192980 + 0 NA Intergenic CpG 16459 NM_031498 2793 Hs.181781 NM_031498 ENSG00000167083 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 G protein subunit gamma transducin 2 protein-coding 10296 chr15 65318961 65319079 + 0 NA Intergenic Intergenic 14343 NR_002757 26832 NR_002757 ENSG00000200156 RNU5B-1 RNU5B|RNU5B-1P|U5B1 RNA, U5B small nuclear 1 snRNA 27355 chr8 8537660 8537764 + 0 NA Intergenic Intergenic -155878 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related kinase activating pseudokinase 1 protein-coding 20482 chr3 156681142 156681315 + 0 NA intron (NM_001184718, intron 2 of 5) intron (NM_001184718, intron 2 of 5) 4564 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 19664 chr3 72447100 72447244 + 0 NA promoter-TSS (NM_012234) promoter-TSS (NM_012234) -549 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 21951 chr4 158810156 158810264 + 0 NA intron (NM_001323916, intron 1 of 16) intron (NM_001323916, intron 1 of 16) 4116 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 30267 chr9 130947436 130947540 + 0 NA Intergenic Intergenic -8420 NM_001145106 84929 Hs.133205 NM_032843 ENSG00000130720 FIBCD1 - fibrinogen C domain containing 1 protein-coding 3588 chr10 37976623 37976799 + 0 NA promoter-TSS (NM_001329659) promoter-TSS (NM_001329659) -56 NR_138067 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 30631 chrX 41333065 41333224 + 0 NA promoter-TSS (NR_126093) promoter-TSS (NR_126093) -164 NR_126093 1654 Hs.728563 NM_001356 ENSG00000215301 DDX3X CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102 DEAD-box helicase 3, X-linked protein-coding 24237 chr6 26520977 26521096 + 0 NA promoter-TSS (NR_026790) promoter-TSS (NR_026790) -670 NR_026790 493812 Hs.272939 NR_026790 HCG11 CTA-14H9.3|bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 1597 chr1 118209794 118209933 + 0 NA Intergenic Intergenic -24638 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 4060 chr10 90921259 90921471 + 0 NA promoter-TSS (NM_014391) promoter-TSS (NM_014391) -90 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 26041 chr7 35389869 35389894 + 0 NA Intergenic L3b|LINE|CR1 76026 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 24258 chr6 27478898 27478988 + 0 NA Intergenic Intergenic -5825 NR_144687 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 29142 chr9 69422370 69422474 + 0 NA Intergenic Intergenic 93097 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 12944 chr17 72421312 72421481 + 0 NA intron (NR_137281, intron 3 of 4) intron (NR_137281, intron 3 of 4) 78585 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 19675 chr3 75669228 75669483 + 0 NA Intergenic CpG -2926 NR_040005 401074 Hs.528540 NR_040004 ENSG00000242516 LINC00960 - long intergenic non-protein coding RNA 960 ncRNA 13122 chr17 81295231 81295379 + 0 NA promoter-TSS (NM_001037984) promoter-TSS (NM_001037984) 34 NM_001037984 124565 Hs.352240 NM_138570 ENSG00000157637 SLC38A10 PP1744 solute carrier family 38 member 10 protein-coding 16333 chr2 131801962 131802072 + 0 NA promoter-TSS (NM_214461).2 promoter-TSS (NM_214461).2 -356 NM_214461 408029 Hs.145567 NM_214461 C2orf27B - chromosome 2 open reading frame 27B protein-coding 20964 chr3 191357068 191357172 + 0 NA exon (NM_174908, exon 2 of 11) exon (NM_174908, exon 2 of 11) -26584 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 24500 chr6 37657694 37657798 + 0 NA intron (NM_153487, intron 3 of 16) intron (NM_153487, intron 3 of 16) 40244 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 29976 chr9 116144198 116144302 + 0 NA Intergenic MIR|SINE|MIR -9542 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 10401 chr15 71572830 71572981 + 0 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 25703 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 11734 chr16 81779185 81779378 + 0 NA promoter-TSS (NM_002661) promoter-TSS (NM_002661) 23 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 23164 chr5 128272210 128272333 + 0 NA intron (NM_001999, intron 61 of 64) MIR|SINE|MIR 188480 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 14340 chr19 32373915 32374005 + 0 NA intron (NM_001136156, intron 5 of 6) Tigger6a|DNA|TcMar-Tigger 28352 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 14412 chr19 38316047 38316180 + 0 NA promoter-TSS (NM_001039671) promoter-TSS (NM_001039671) -147 NM_001039672 90522 Hs.280741 NM_033557 ENSG00000167645 YIF1B FinGER8 Yip1 interacting factor homolog B, membrane trafficking protein protein-coding 16483 chr2 153478899 153478963 + 0 NA promoter-TSS (NM_019845) promoter-TSS (NM_019845) -123 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator candidate protein-coding 23643 chr5 160289692 160289796 + 0 NA intron (NR_131769, intron 2 of 7) intron (NR_131769, intron 2 of 7) 22856 NM_001308173 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 2387 chr1 201982659 201982733 + 0 NA promoter-TSS (NM_001319182) promoter-TSS (NM_001319182) 58 NM_001319183 6051 Hs.497391 NM_020216 ENSG00000176393 RNPEP AP-B arginyl aminopeptidase protein-coding 9282 chr14 68977891 68977995 + 0 NA intron (NM_001102, intron 1 of 20) CpG 1423 NM_001130004 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 14490 chr19 42217828 42217960 + 0 NA promoter-TSS (NM_001270615) promoter-TSS (NM_001270615) -102 NM_133328 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 26274 chr7 51019554 51019658 + 0 NA intron (NM_001346443, intron 11 of 11) intron (NM_001346443, intron 11 of 11) -226144 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 340 chr1 23197008 23197160 + 0 NA Intergenic Intergenic -2355 NM_000864 3352 Hs.121482 NM_000864 ENSG00000179546 HTR1D 5-HT1D|HT1DA|HTR1DA|HTRL|RDC4 5-hydroxytryptamine receptor 1D protein-coding 23550 chr5 151652107 151652211 + 0 NA Intergenic Intergenic -24786 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CTB-113P19.1 - uncharacterized LOC101927096 ncRNA 6403 chr11 134024532 134024636 + 0 NA Intergenic Intergenic -7688 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 24370 chr6 31665916 31666053 + 0 NA promoter-TSS (NM_001199238) promoter-TSS (NM_001199238) 104 NM_001320 1460 Hs.73527 NM_001320 ENSG00000204435 CSNK2B CK2B|CK2N|CSK2B|G5A casein kinase 2 beta protein-coding 22656 chr5 66989494 66989598 + 0 NA intron (NM_001290226, intron 1 of 26) intron (NM_001290226, intron 1 of 26) 14608 NR_111908 101928794 Hs.672435 NR_111908 MAST4-AS1 - MAST4 antisense RNA 1 ncRNA 8133 chr13 38824580 38824684 + 0 NA intron (NM_207361, intron 6 of 23) LTR8A|LTR|ERV1 137596 NM_207361 341640 Hs.253994 NM_207361 ENSG00000150893 FREM2 - FRAS1 related extracellular matrix protein 2 protein-coding 17511 chr20 4760694 4760798 + 0 NA Intergenic CpG -20078 NR_024267 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion protein (testis specific) ncRNA 30889 chrX 102155966 102156070 + 0 NA promoter-TSS (NM_001159560) promoter-TSS (NM_001159560) -4 NM_001012978 340542 Hs.47209 NM_001012978 ENSG00000184515 BEX5 NGFRAP1L1 brain expressed X-linked 5 protein-coding 29609 chr9 95127723 95127827 + 0 NA intron (NM_000136, intron 8 of 14) intron (NM_000136, intron 8 of 14) -41681 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 20689 chr3 175586050 175586154 + 0 NA intron (NM_207015, intron 10 of 13) intron (NM_207015, intron 10 of 13) 190231 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 18695 chr22 24270826 24270930 + 0 NA promoter-TSS (NM_001145468) promoter-TSS (NM_001145468) 61 NM_015330 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1 sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 17458 chr20 2102587 2102738 + 0 NA intron (NM_080836, intron 1 of 3) CpG 780 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 20253 chr3 138915586 138915738 + 0 NA Intergenic CpG 28358 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 5084 chr11 30586309 30586413 + 0 NA promoter-TSS (NM_001145399) promoter-TSS (NM_001145399) 22 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 22768 chr5 78360376 78360440 + 0 NA promoter-TSS (NM_004866) promoter-TSS (NM_004866) -95 NR_110885 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 24815 chr6 79078485 79078572 + 0 NA promoter-TSS (NM_017934) promoter-TSS (NM_017934) -230 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 3571 chr10 34906091 34906241 + 0 NA Intergenic Intergenic 90398 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 9862 chr15 34988235 34988339 + 0 NA promoter-TSS (NM_014106) promoter-TSS (NM_014106) 9 NM_014106 54989 Hs.744990 NM_014106 ENSG00000198146 ZNF770 PRO1914 zinc finger protein 770 protein-coding 17077 chr2 216013577 216013707 + 0 NA promoter-TSS (NM_018000) promoter-TSS (NM_018000) -19 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 10975 chr16 8505389 8505537 + 0 NA Intergenic Intergenic 84375 NM_001290098 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 834 chr1 47314208 47314343 + 0 NA promoter-TSS (NM_003035) promoter-TSS (NM_003035) -128 NM_001282937 6491 Hs.525198 NM_003035 ENSG00000123473 STIL MCPH7|SIL SCL/TAL1 interrupting locus protein-coding 12160 chr17 17387108 17387212 + 0 NA Intergenic Intergenic 83794 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 19503 chr3 49856609 49856743 + 0 NA promoter-TSS (NM_005879) promoter-TSS (NM_005879) -117 NM_005879 10293 Hs.517972 NM_005879 ENSG00000183763 TRAIP RNF206|SCKL9|TRIP TRAF interacting protein protein-coding 7760 chr12 120641461 120641539 + 0 NA intron (NM_001033677, intron 1 of 5) CpG 881 NM_001033677 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 15747 chr2 69667966 69668087 + 0 NA intron (NM_001320698, intron 2 of 14) MLT1H2|LTR|ERVL-MaLR -24181 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 9084 chr14 57349433 57349537 + 0 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -41068 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 28055 chr8 77121926 77122018 + 0 NA Intergenic MIR|SINE|MIR -120928 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 23560 chr5 153079569 153079673 + 0 NA Intergenic MER41B|LTR|ERV1 -107272 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 20796 chr3 183291828 183291932 + 0 NA intron (NM_015078, intron 13 of 29) intron (NM_015078, intron 13 of 29) 38636 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 28496 chr8 118793299 118793403 + 0 NA Intergenic Intergenic 158793 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 19202 chr3 14948039 14948048 + 0 NA promoter-TSS (NR_046255) promoter-TSS (NR_046255) -150 NR_046255 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 29403 chr9 84770254 84770358 + 0 NA intron (NM_001018064, intron 11 of 16) LTR16A2|LTR|ERVL 99929 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 24307 chr6 29964941 29965090 + 0 NA Intergenic Intergenic -10100 NR_028032 10255 Hs.656251 NM_005844 ENSG00000204625 HCG9 HCGIX|HCGIX4 HLA complex group 9 (non-protein coding) ncRNA 7458 chr12 95605226 95605330 + 0 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -43977 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 1667 chr1 149899513 149899666 + 0 NA promoter-TSS (NM_016074) promoter-TSS (NM_016074) 7 NM_001321026 51027 Hs.13880 NM_016074 ENSG00000178096 BOLA1 CGI-143 bolA family member 1 protein-coding 8671 chr14 20855797 20855926 + 0 NA Intergenic Intergenic -35542 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 10131 chr15 53910256 53910432 + 0 NA Intergenic LTR18B|LTR|ERVL -67836 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 18275 chr20 54688592 54688666 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR 212911 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 5085 chr11 30741440 30741517 + 0 NA Intergenic Intergenic -155095 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 569 chr1 32989298 32989349 + 0 NA Intergenic L3b|LINE|CR1 -24510 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 28919 chr9 6681635 6681728 + 0 NA Intergenic CpG -35989 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 21017 chr3 194486947 194487051 + 0 NA promoter-TSS (NR_033929) promoter-TSS (NR_033929) -141 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 30391 chr9 137436200 137436304 + 0 NA exon (NM_001033113, exon 7 of 10) exon (NM_001033113, exon 7 of 10) 5197 NM_198585 377841 Hs.512562 NM_198585 ENSG00000188833 ENTPD8 E-NTPDase|GLSR2492|NTPDase-8|UNQ2492 ectonucleoside triphosphate diphosphohydrolase 8 protein-coding 21358 chr4 52051920 52052058 + 0 NA intron (NR_144359, intron 1 of 8) CpG 658 NM_001297608 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 16970 chr2 206159499 206159613 + 0 NA promoter-TSS (NM_001199983) promoter-TSS (NM_001199983) -37 NM_001199983 4719 Hs.471207 NM_005006 ENSG00000023228 NDUFS1 CI-75Kd|CI-75k|PRO1304 NADH:ubiquinone oxidoreductase core subunit S1 protein-coding 11912 chr17 2303613 2303717 + 0 NA promoter-TSS (NM_021947) promoter-TSS (NM_021947) 110 NM_017575 23293 Hs.448342 NM_017575 ENSG00000070366 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6, nonsense mediated mRNA decay factor protein-coding 4269 chr10 102917968 102918014 + 0 NA promoter-TSS (NM_199077) promoter-TSS (NM_199077) -327 NM_017649 54805 Hs.643509 NM_017649 ENSG00000148842 CNNM2 ACDP2|HOMG6|HOMGSMR cyclin and CBS domain divalent metal cation transport mediator 2 protein-coding 18985 chr22 43100253 43100357 + 0 NA Intergenic Intergenic -10443 NM_001197 638 Hs.475055 NM_001197 ENSG00000100290 BIK BIP1|BP4|NBK BCL2 interacting killer protein-coding 6727 chr12 22130822 22130964 + 0 NA Intergenic L2c|LINE|L2 84719 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 30258 chr9 130561200 130561341 + 0 NA Intergenic Intergenic 18224 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 14062 chr19 10027899 10028003 + 0 NA Intergenic Intergenic -10403 NR_049855 100847093 NR_049855 ENSG00000266204 MIR5589 - microRNA 5589 ncRNA 5188 chr11 37505092 37505196 + 0 NA Intergenic Intergenic -433457 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 5251 chr11 47426638 47426693 + 0 NA promoter-TSS (NM_002804) promoter-TSS (NM_002804) -192 NM_002804 5702 Hs.250758 NM_002804 ENSG00000165916 PSMC3 TBP1 proteasome 26S subunit, ATPase 3 protein-coding 6444 chr12 1690848 1691008 + 0 NA promoter-TSS (NM_024551) promoter-TSS (NM_024551) -153 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 12744 chr17 56978966 56979070 + 0 NA intron (NM_021626, intron 1 of 12) intron (NM_021626, intron 1 of 12) 911 NM_021626 59342 Hs.514950 NM_021626 ENSG00000121064 SCPEP1 HSCP1|RISC serine carboxypeptidase 1 protein-coding 21582 chr4 90174864 90175004 + 0 NA intron (NM_001145065, intron 1 of 10) L1ME1|LINE|L1 47401 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 18096 chr20 45507086 45507190 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger 8486 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 10402 chr15 71761861 71761964 + 0 NA intron (NM_001286429, intron 9 of 11) intron (NM_001286429, intron 9 of 11) -48636 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 10511 chr15 78945162 78945306 + 0 NA promoter-TSS (NM_001319137) promoter-TSS (NM_001319137) -136 NM_001319137 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 26094 chr7 39605243 39605347 + 0 NA intron (NM_001282446, intron 2 of 2) MLT2B4|LTR|ERVL -18258 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 14462 chr19 40662953 40663119 + 0 NA Intergenic CpG 27128 NM_001289980 9253 Hs.326953 NM_004756 ENSG00000105245 NUMBL CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23 NUMB like, endocytic adaptor protein protein-coding 20065 chr3 125063068 125063150 + 0 NA Intergenic Intergenic -7151 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 7937 chr13 20175029 20175088 + 0 NA Intergenic Intergenic -14014 NM_021954 2700 Hs.130313 NM_021954 ENSG00000121743 GJA3 CTRCT14|CX46|CZP3 gap junction protein alpha 3 protein-coding 246 chr1 17011993 17012014 + 0 NA promoter-TSS (NM_022089) promoter-TSS (NM_022089) -31 NM_001141974 23400 Hs.128866 NM_022089 ENSG00000159363 ATP13A2 CLN12|HSA9947|KRPPD|PARK9 ATPase 13A2 protein-coding 9918 chr15 40150193 40150297 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -10764 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 26506 chr7 82699953 82700127 + 0 NA Intergenic MER41B|LTR|ERV1 -256234 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 16215 chr2 119492294 119492398 + 0 NA intron (NM_002980, intron 2 of 12) intron (NM_002980, intron 2 of 12) 32106 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 17574 chr20 10309551 10309655 + 0 NA Intergenic Intergenic -90097 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 5610 chr11 70399873 70400023 + 0 NA intron (NM_001184740, intron 1 of 18) intron (NM_001184740, intron 1 of 18) 1442 NM_138565 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 2227 chr1 184743239 184743343 + 0 NA intron (NM_025191, intron 2 of 19) intron (NM_025191, intron 2 of 19) 11616 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 4001 chr10 84139424 84139557 + 0 NA promoter-TSS (NM_014394) promoter-TSS (NM_014394) 61 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 15699 chr2 66700354 66700458 + 0 NA intron (NR_110264, intron 1 of 2) intron (NR_110264, intron 1 of 2) 2821 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 24791 chr6 73395168 73395315 + 0 NA intron (NM_018665, intron 1 of 16) intron (NM_018665, intron 1 of 16) 679 NM_018665 55510 Hs.125507 NM_018665 ENSG00000080007 DDX43 CT13|HAGE DEAD-box helicase 43 protein-coding 3241 chr10 5977606 5977651 + 0 NA promoter-TSS (NM_001256765) promoter-TSS (NM_001256765) -17 NM_172200 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 11957 chr17 4408076 4408182 + 0 NA Intergenic Intergenic -25795 NM_001320449 201305 Hs.657543 NM_182538 ENSG00000182557 SPNS3 - sphingolipid transporter 3 (putative) protein-coding 19571 chr3 56758607 56758730 + 0 NA intron (NM_001128615, intron 5 of 12) intron (NM_001128615, intron 5 of 12) 17049 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 18225 chr20 51860247 51860259 + 0 NA intron (NR_110016, intron 1 of 2) intron (NR_110016, intron 1 of 2) 2660 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 11455 chr16 62038451 62038503 + 0 NA Intergenic Intergenic -1642 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 18821 chr22 32723713 32723817 + 0 NA intron (NM_001135774, intron 6 of 13) intron (NM_001135774, intron 6 of 13) -77051 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 536 chr1 31956098 31956151 + 0 NA Intergenic Intergenic -17737 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 29593 chr9 94871030 94871054 + 0 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 61080 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 28373 chr8 104175819 104175923 + 0 NA intron (NM_014677, intron 17 of 21) intron (NM_014677, intron 17 of 21) -47464 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 24874 chr6 85078193 85078297 + 0 NA Intergenic Intergenic 311941 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LOC101928820 - uncharacterized LOC101928820 ncRNA 7917 chr12 132829088 132829208 + 0 NA promoter-TSS (NM_005895) promoter-TSS (NM_005895) -308 NM_001172557 2802 Hs.507333 NM_005895 ENSG00000090615 GOLGA3 GCP170|MEA-2 golgin A3 protein-coding 22891 chr5 93582973 93583077 + 0 NA promoter-TSS (NM_005654) promoter-TSS (NM_005654) -312 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding 17804 chr20 24930533 24930680 + 0 NA Intergenic HERVE-int|LTR|ERV1 -18624 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 1767 chr1 153608927 153609056 + 0 NA 5' UTR (NM_001317007, exon 1 of 3) 5' UTR (NM_001317007, exon 1 of 3) 364 NM_001317008 140576 Hs.515714 NM_080388 ENSG00000188643 S100A16 AAG13|DT1P1A7|S100F S100 calcium binding protein A16 protein-coding 23144 chr5 126600872 126600977 + 0 NA promoter-TSS (NM_032177) promoter-TSS (NM_032177) 9 NM_032177 51808 Hs.555731 NM_032177 ENSG00000164902 PHAX RNUXA phosphorylated adaptor for RNA export protein-coding 13608 chr18 54607700 54607775 + 0 NA Intergenic Intergenic 16578 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 2237 chr1 185045364 185045468 + 0 NA promoter-TSS (NM_007212) promoter-TSS (NM_007212) -3 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 28114 chr8 83073577 83073681 + 0 NA Intergenic MER51C|LTR|ERV1 161525 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 27874 chr8 56211683 56211803 + 0 NA promoter-TSS (NM_001114634) promoter-TSS (NM_001114634) 105 NM_024300 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 7125 chr12 56159152 56159255 + 0 NA intron (NM_079423, intron 2 of 5) intron (NM_079423, intron 2 of 5) 942 NM_079423 4637 Hs.632717 NM_021019 ENSG00000092841 MYL6 ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM myosin light chain 6 protein-coding 5378 chr11 62671858 62671901 + 0 NA promoter-TSS (NM_024099) promoter-TSS (NM_024099) -110 NM_024099 79081 Hs.9061 NM_024099 ENSG00000162194 LBHD1 C11orf48 LBH domain containing 1 protein-coding 8767 chr14 24442696 24442800 + 0 NA promoter-TSS (NR_110032) promoter-TSS (NR_110032) 53 NM_020195 56948 Hs.643552 NM_020195 ENSG00000100445 SDR39U1 C14orf124|HCDI short chain dehydrogenase/reductase family 39U member 1 protein-coding 15713 chr2 67840583 67840687 + 0 NA Intergenic Intergenic -15073 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 9525 chr14 89137673 89137814 + 0 NA Intergenic Intergenic 279367 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 14999 chr2 10584939 10585052 + 0 NA intron (NR_048552, intron 18 of 19) intron (NR_048552, intron 18 of 19) 104992 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 12812 chr17 62093527 62093631 + 0 NA Intergenic Intergenic -28297 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 20427 chr3 152389425 152389505 + 0 NA intron (NM_001314057, intron 2 of 11) Tigger3b|DNA|TcMar-Tigger -48475 NR_132656 645843 Hs.632562 NM_001123228 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 7677 chr12 113174523 113174662 + 0 NA intron (NM_024072, intron 10 of 19) intron (NM_024072, intron 10 of 19) 10887 NM_001111322 79039 Hs.506861 NM_024072 ENSG00000123064 DDX54 DP97 DEAD-box helicase 54 protein-coding 11714 chr16 81266847 81266951 + 0 NA intron (NM_017429, intron 5 of 10) MamRTE1|LINE|RTE-BovB 28208 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 15898 chr2 85327972 85328026 + 0 NA 5' UTR (NM_001206844, exon 1 of 5) 5' UTR (NM_001206844, exon 1 of 5) 297 NM_001206840 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 4025 chr10 86755729 86755833 + 0 NA promoter-TSS (NM_004329) promoter-TSS (NM_004329) -858 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 17451 chr20 1828620 1828724 + 0 NA Intergenic Intergenic -48926 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 22626 chr5 64766075 64766229 + 0 NA intron (NM_173829, intron 1 of 4) L2b|LINE|L2 2517 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 30721 chrX 49879465 49879526 + 0 NA promoter-TSS (NR_026742) promoter-TSS (NR_026742) -139 NR_026742 158572 Hs.408191 NM_001025449 ENSG00000234390 USP27X-AS1 - USP27X antisense RNA 1 (head to head) ncRNA 21774 chr4 124712639 124712690 + 0 NA promoter-TSS (NM_020337) promoter-TSS (NM_020337) 68 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 19637 chr3 67017409 67017513 + 0 NA Intergenic Intergenic 19158 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 20151 chr3 130893961 130894093 + 0 NA promoter-TSS (NM_001199179) promoter-TSS (NM_001199179) 12 NM_001001485 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 19172 chr3 12664110 12664274 + 0 NA promoter-TSS (NM_002880) promoter-TSS (NM_002880) 9 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 3707 chr10 57785700 57785797 + 0 NA Intergenic MER41B|LTR|ERV1 -481189 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 21801 chr4 129342991 129343129 + 0 NA Intergenic Intergenic 246933 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 9019 chr14 53608574 53608706 + 0 NA Intergenic Intergenic 339844 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 6457 chr12 3168873 3168940 + 0 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 91551 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 6431 chr12 598350 598454 + 0 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) -11916 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 3343 chr10 16646852 16646956 + 0 NA intron (NM_152724, intron 7 of 7) L1MB8|LINE|L1 -124899 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 6951 chr12 48489177 48489271 + 0 NA intron (NM_152319, intron 5 of 8) MamTip3|DNA|hAT-Tip100 6721 NM_152319 121273 Hs.98202 NM_152319 ENSG00000177627 C12orf54 HSD-29|HSD-30 chromosome 12 open reading frame 54 protein-coding 6315 chr11 128095587 128095691 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL 426671 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 4036 chr10 88152879 88152983 + 0 NA Intergenic Intergenic 289493 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 phosphatase and tensin homolog protein-coding 11119 chr16 22191339 22191369 + 0 NA Intergenic CpG -14917 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 3467 chr10 26781179 26781295 + 0 NA intron (NM_001012750, intron 2 of 10) HERVL40-int|LTR|ERVL 79850 NM_001012750 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 12766 chr17 58007665 58007761 + 0 NA promoter-TSS (NM_001078166) promoter-TSS (NM_001078166) -367 NM_006924 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 1197 chr1 84842951 84843033 + 0 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 50221 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 6523 chr12 6534373 6534477 + 0 NA promoter-TSS (NM_002046) promoter-TSS (NM_002046) 20 NM_002046 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 12458 chr17 40287614 40287752 + 0 NA promoter-TSS (NM_001254) promoter-TSS (NM_001254) -211 NM_001254 990 Hs.405958 NM_001254 ENSG00000094804 CDC6 CDC18L|HsCDC18|HsCDC6|MGORS5 cell division cycle 6 protein-coding 4390 chr10 114174222 114174379 + 0 NA promoter-TSS (NM_018017) promoter-TSS (NM_018017) -80 NM_018017 55088 Hs.159066 NM_018017 ENSG00000165813 CCDC186 C10orf118 coiled-coil domain containing 186 protein-coding 10725 chr15 92809223 92809231 + 0 NA Intergenic CpG 13743 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 30977 chrX 112832843 112832947 + 0 NA intron (NM_133265, intron 1 of 11) intron (NM_133265, intron 1 of 11) 7920 NM_133265 154796 Hs.528051 NM_133265 ENSG00000126016 AMOT - angiomotin protein-coding 20147 chr3 130755798 130755925 + 0 NA Intergenic Intergenic -9009 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 15591 chr2 56741635 56741743 + 0 NA Intergenic Intergenic -555919 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 17591 chr20 10654699 10654857 + 0 NA intron (NM_000214, intron 5 of 25) intron (NM_000214, intron 5 of 25) -5083 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 23025 chr5 112707637 112707700 + 0 NA 5' UTR (NM_001127511, exon 1 of 14) 5' UTR (NM_001127511, exon 1 of 14) 163 NM_001127511 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC, WNT signaling pathway regulator protein-coding 26027 chr7 34069764 34069868 + 0 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 164905 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 20839 chr3 185317248 185317373 + 0 NA intron (NM_001242317, intron 2 of 12) OldhAT1|DNA|hAT-Ac 34369 NR_038322 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 7142 chr12 56637012 56637116 + 0 NA promoter-TSS (NM_013449) promoter-TSS (NM_013449) -685 NM_013449 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 7314 chr12 79058488 79058615 + 0 NA intron (NM_001135806, intron 2 of 9) intron (NM_001135806, intron 2 of 9) 12898 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 26205 chr7 46432736 46432878 + 0 NA Intergenic Intergenic 264315 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 21623 chr4 99950512 99950616 + 0 NA promoter-TSS (NM_002106) promoter-TSS (NM_002106) 70 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 5968 chr11 102268735 102268764 + 0 NA Intergenic CpG -48701 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 9260 chr14 68042648 68042784 + 0 NA intron (NM_002877, intron 7 of 10) intron (NM_002877, intron 7 of 10) 219124 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 18765 chr22 29766927 29767071 + 0 NA promoter-TSS (NM_019103) promoter-TSS (NM_019103) 12 NM_001318129 55954 Hs.713647 NM_019103 ENSG00000100319 ZMAT5 SNRNP20|U11/U12-20K|ZC3H19 zinc finger matrin-type 5 protein-coding 7635 chr12 109845427 109845477 + 0 NA Intergenic Intergenic -12045 NM_021625 59341 Hs.506713 NM_021625 ENSG00000111199 TRPV4 BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel subfamily V member 4 protein-coding 15010 chr2 11370794 11370825 + 0 NA Intergenic MIRb|SINE|MIR -23172 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 22108 chr4 185306025 185306129 + 0 NA intron (NM_001317781, intron 6 of 18) intron (NM_001317781, intron 6 of 18) 72921 NM_018409 55805 Hs.558513 NM_018409 ENSG00000109771 LRP2BP - LRP2 binding protein protein-coding 16822 chr2 190470009 190470079 + 0 NA intron (NM_017694, intron 4 of 7) intron (NM_017694, intron 4 of 7) 61689 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 22591 chr5 59745466 59745599 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 23080 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 19111 chr3 6805347 6805451 + 0 NA promoter-TSS (NR_110123) promoter-TSS (NR_110123) 50 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 22467 chr5 43313669 43313795 + 0 NA promoter-TSS (NM_001324219) promoter-TSS (NM_001324219) -220 NM_001098272 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 301 chr1 20279530 20279634 + 0 NA Intergenic L2a|LINE|L2 -11337 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 20171 chr3 132722915 132723044 + 0 NA promoter-TSS (NR_037804) promoter-TSS (NR_037804) -520 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 - NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 18014 chr20 40690121 40690235 + 0 NA promoter-TSS (NM_005461) promoter-TSS (NM_005461) -938 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 15849 chr2 75523641 75523772 + 0 NA promoter-TSS (NR_110281) promoter-TSS (NR_110281) -362 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 21339 chr4 48700040 48700144 + 0 NA intron (NM_015030, intron 2 of 63) L2c|LINE|L2 80207 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 20498 chr3 157174904 157174922 + 0 NA Intergenic CpG -14153 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 19630 chr3 65794026 65794130 + 0 NA intron (NM_001033057, intron 1 of 22) intron (NM_001033057, intron 1 of 22) -99738 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 4686 chr11 1772648 1772752 + 0 NA Intergenic Intergenic -8708 NM_001909 1509 Hs.654447 NM_001909 ENSG00000117984 CTSD CLN10|CPSD|HEL-S-130P cathepsin D protein-coding 8207 chr13 44918042 44918105 + 0 NA Intergenic Intergenic 71405 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 NUFIP1, FMR1 interacting protein 1 protein-coding 27546 chr8 23922763 23922867 + 0 NA Intergenic Intergenic -68008 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 18770 chr22 29883448 29883518 + 0 NA intron (NM_153051, intron 1 of 18) CpG 314 NM_153051 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 15496 chr2 46941444 46941526 + 0 NA 5' UTR (NM_001288951, exon 1 of 21) 5' UTR (NM_001288951, exon 1 of 21) 311 NM_001288951 57217 Hs.370603 NM_020458 ENSG00000068724 TTC7A GIDID|MINAT|TTC7 tetratricopeptide repeat domain 7A protein-coding 16219 chr2 119759661 119759801 + 0 NA promoter-TSS (NM_002830) promoter-TSS (NM_002830) 100 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase, non-receptor type 4 protein-coding 3063 chr1 240436346 240436482 + 0 NA intron (NM_001305424, intron 16 of 18) intron (NM_001305424, intron 16 of 18) 175748 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 7216 chr12 63918322 63918455 + 0 NA intron (NM_020762, intron 1 of 21) MIR|SINE|MIR 73635 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 16988 chr2 207331043 207331147 + 0 NA Intergenic Intergenic -61671 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 20782 chr3 182637794 182637844 + 0 NA Intergenic (GCCCT)n|Simple_repeat|Simple_repeat -130695 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 28624 chr8 126951405 126951509 + 0 NA Intergenic Intergenic -61697 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 14598 chr19 46714303 46714407 + 0 NA promoter-TSS (NM_001079882) promoter-TSS (NM_001079882) -35 NM_001079882 25865 Hs.466987 NM_016457 ENSG00000105287 PRKD2 HSPC187|PKD2|nPKC-D2 protein kinase D2 protein-coding 27742 chr8 42052229 42052333 + 0 NA promoter-TSS (NM_006766) promoter-TSS (NM_006766) -255 NM_001305878 7994 Hs.491577 NM_006766 ENSG00000083168 KAT6A MOZ|MRD32|MYST-3|MYST3|RUNXBP2|ZC2HC6A|ZNF220 lysine acetyltransferase 6A protein-coding 18863 chr22 37432098 37432223 + 0 NA Intergenic Intergenic -4690 NR_110512 114794 Hs.344170 NM_052906 ENSG00000166897 ELFN2 LRRC62|PPP1R29 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding 24930 chr6 96521700 96521833 + 0 NA promoter-TSS (NM_015323) promoter-TSS (NM_015323) -60 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 2258 chr1 190067662 190067766 + 0 NA Intergenic Intergenic 408296 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 10740 chr15 93173535 93173676 + 0 NA Intergenic Intergenic -84391 NM_020211 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 8221 chr13 45464831 45464935 + 0 NA promoter-TSS (NM_031431) promoter-TSS (NM_031431) -12 NM_031431 83548 Hs.507948 NM_031431 ENSG00000136152 COG3 SEC34 component of oligomeric golgi complex 3 protein-coding 25730 chr7 15643330 15643434 + 0 NA intron (NM_005924, intron 1 of 2) L1PA17|LINE|L1 -24565 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 17127 chr2 219543867 219544036 + 0 NA promoter-TSS (NM_001195731) promoter-TSS (NM_001195731) -55 NM_001005209 130612 Hs.446664 NM_001005209 ENSG00000188760 TMEM198 TMEM198A transmembrane protein 198 protein-coding 10565 chr15 82122883 82122987 + 0 NA Intergenic MER5A|DNA|hAT-Charlie 34341 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 27168 chr7 143472217 143472364 + 0 NA intron (NR_033897, intron 2 of 4) LTR14C|LTR|ERVK -5583 NM_176883 259287 Hs.650648 NM_176883 ENSG00000221855 TAS2R41 T2R41|T2R59 taste 2 receptor member 41 protein-coding 796 chr1 45304023 45304175 + 0 NA non-coding (NR_024270, exon 1 of 1) non-coding (NR_024270, exon 1 of 1) 189 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 15620 chr2 61017064 61017180 + 0 NA promoter-TSS (NM_001322124) promoter-TSS (NM_001322124) 90 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridylate synthase 10 protein-coding 5512 chr11 66312872 66313006 + 0 NA Intergenic CpG 4105 NM_020404 57124 Hs.195727 NM_020404 ENSG00000174807 CD248 CD164L1|TEM1 CD248 molecule protein-coding 12013 chr17 6669946 6670078 + 0 NA Intergenic Intergenic 12293 NR_045985 100652883 Hs.549540 NR_045985 ALOX15P1 ALOX15P arachidonate 15-lipoxygenase pseudogene 1 pseudo 30947 chrX 108001587 108001611 + 0 NA Intergenic L1PA16|LINE|L1 -19229 NM_031273 56156 Hs.333130 NM_031273 ENSG00000170925 TEX13B TGC3B|TSGA5 testis expressed 13B protein-coding 19003 chr22 45441305 45441438 + 0 NA Intergenic Intergenic 27680 NM_015653 26150 Hs.475110 NM_015653 ENSG00000128408 RIBC2 C22orf11|TRIB RIB43A domain with coiled-coils 2 protein-coding 4506 chr10 121159028 121159110 + 0 NA Intergenic Intergenic -307890 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 10444 chr15 74546133 74546215 + 0 NA intron (NM_006465, intron 2 of 8) MIR3|SINE|MIR 4997 NM_006465 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 15416 chr2 41860073 41860177 + 0 NA Intergenic Zaphod|DNA|hAT-Tip100 -17430 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 12265 chr17 28599089 28599115 + 0 NA promoter-TSS (NR_040012) promoter-TSS (NR_040012) -31 NR_040012 100506436 Hs.743630 NR_040012 SPAG5-AS1 - SPAG5 antisense RNA 1 ncRNA 28239 chr8 95269167 95269318 + 0 NA promoter-TSS (NM_177965) promoter-TSS (NM_177965) -8 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 22456 chr5 42909062 42909166 + 0 NA Intergenic MER1B|DNA|hAT-Charlie 84219 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 5034 chr11 26621240 26621344 + 0 NA intron (NM_001313726, intron 18 of 27) L2a|LINE|L2 -49024 NM_001135091 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 27647 chr8 30364463 30364608 + 0 NA Intergenic Intergenic -19966 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein with multiple splicing protein-coding 13413 chr18 32531341 32531573 + 0 NA Intergenic Intergenic 19794 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 26155 chr7 43648248 43648385 + 0 NA intron (NM_018224, intron 2 of 5) intron (NM_018224, intron 2 of 5) 65223 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 21503 chr4 81421577 81421681 + 0 NA Intergenic Intergenic 50299 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 6703 chr12 18262650 18262754 + 0 NA intron (NM_001288772, intron 1 of 32) intron (NM_001288772, intron 1 of 32) 1162 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 8231 chr13 46894187 46894291 + 0 NA intron (NM_001165947, intron 1 of 2) intron (NM_001165947, intron 1 of 2) 2837 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 28582 chr8 124629717 124629821 + 0 NA intron (NM_001282974, intron 3 of 13) intron (NM_001282974, intron 3 of 13) 90667 NM_001278645 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 23777 chr5 176537889 176538018 + 0 NA promoter-TSS (NM_014901) promoter-TSS (NM_014901) -533 NM_014901 22838 Hs.434888 NM_014901 ENSG00000146083 RNF44 - ring finger protein 44 protein-coding 3743 chr10 60895002 60895106 + 0 NA intron (NR_024555, intron 5 of 11) intron (NR_024555, intron 5 of 11) 49221 NM_001242359 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 13715 chr18 63617698 63617823 + 0 NA Intergenic Intergenic 26559 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 15830 chr2 74465373 74465413 + 0 NA promoter-TSS (NM_006302) promoter-TSS (NM_006302) 17 NM_001146158 7841 Hs.516119 NM_006302 ENSG00000115275 MOGS CDG2B|CWH41|DER7|GCS1 mannosyl-oligosaccharide glucosidase protein-coding 25753 chr7 17206348 17206487 + 0 NA Intergenic Intergenic -92235 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 17271 chr2 231613943 231614047 + 0 NA Intergenic CpG 21131 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 14504 chr19 43465568 43465755 + 0 NA promoter-TSS (NM_014400) promoter-TSS (NM_014400) 18 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 15071 chr2 15561218 15561264 + 0 NA non-coding (NR_052013, exon 1 of 51) non-coding (NR_052013, exon 1 of 51) 107 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 3683 chr10 52314299 52314332 + 0 NA promoter-TSS (NR_038277) promoter-TSS (NR_038277) 34 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 27303 chr7 158945089 158945193 + 0 NA intron (NM_018051, intron 24 of 24) intron (NM_018051, intron 24 of 24) -63213 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 1161 chr1 79323421 79323538 + 0 NA Intergenic Intergenic -316669 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 16324 chr2 130836838 130836998 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -79733 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 6628 chr12 12835494 12835636 + 0 NA Intergenic Intergenic 22219 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 29460 chr9 87497664 87497768 + 0 NA promoter-TSS (NM_001288730) promoter-TSS (NM_001288730) 35 NM_001288730 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 23466 chr5 148790575 148790755 + 0 NA Intergenic Intergenic -35928 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 990 chr1 61725104 61725242 + 0 NA non-coding (NR_135160, exon 1 of 8) non-coding (NR_135160, exon 1 of 8) 250 NR_135160 83941 Hs.656790 NM_032027 ENSG00000162604 TM2D1 BBP TM2 domain containing 1 protein-coding 15437 chr2 43168842 43168996 + 0 NA Intergenic Intergenic 57687 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 349 chr1 23528220 23528324 + 0 NA non-coding (NR_110799, exon 3 of 3) non-coding (NR_110799, exon 3 of 3) 2948 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 16437 chr2 148594227 148594331 + 0 NA Intergenic Intergenic -50712 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 27005 chr7 130356270 130356362 + 0 NA intron (NM_001127442, intron 4 of 10) intron (NM_001127442, intron 4 of 10) 10811 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 16442 chr2 148875150 148875254 + 0 NA promoter-TSS (NM_004522) promoter-TSS (NM_004522) -21 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 3970 chr10 79195534 79195638 + 0 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 126551 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger MIZ-type containing 1 protein-coding 14288 chr19 19192562 19192644 + 0 NA promoter-TSS (NM_005919) promoter-TSS (NM_005919) -12 NM_005919 4207 Hs.153629 NM_005919 ENSG00000064489 BORCS8-MEF2B LOC729991-MEF2B|MEF2B|MEF2BNB-MEF2B BORCS8-MEF2B readthrough protein-coding 3364 chr10 17835799 17835903 + 0 NA intron (NM_002438, intron 4 of 29) MER5A|DNA|hAT-Charlie -9256 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 3251 chr10 6291285 6291389 + 0 NA Intergenic AluSz|SINE|Alu -35207 NR_040079 399715 NR_040079 ENSG00000215244 LOC399715 - uncharacterized LOC399715 ncRNA 18715 chr22 25405181 25405301 + 0 NA Intergenic CpG -23664 NM_001135772 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 7689 chr12 114668251 114668355 + 0 NA Intergenic Intergenic 15861 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 23219 chr5 132556861 132556992 + 0 NA promoter-TSS (NM_005732) promoter-TSS (NM_005732) 2 NM_005732 10111 Hs.633509 NM_005732 ENSG00000113522 RAD50 NBSLD|RAD502|hRad50 RAD50 double strand break repair protein protein-coding 15347 chr2 36597709 36597813 + 0 NA intron (NM_005102, intron 1 of 7) CpG 428 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 30172 chr9 128149176 128149319 + 0 NA promoter-TSS (NM_005564) promoter-TSS (NM_005564) -183 NM_005564 3934 Hs.204238 NM_005564 ENSG00000148346 LCN2 24p3|MSFI|NGAL|p25 lipocalin 2 protein-coding 15789 chr2 72138361 72138465 + 0 NA intron (NM_001277742, intron 1 of 4) intron (NM_001277742, intron 1 of 4) 9449 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 25446 chr6 161038647 161038677 + 0 NA intron (NR_120425, intron 2 of 27) MLT1G|LTR|ERVL-MaLR 46935 NM_001301072 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 11348 chr16 53054912 53054987 + 0 NA promoter-TSS (NM_025134) promoter-TSS (NM_025134) -84 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 13094 chr17 79839633 79839737 + 0 NA promoter-TSS (NM_003655) promoter-TSS (NM_003655) -271 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 12600 chr17 47305504 47305629 + 0 NA intron (NR_110880, intron 2 of 2) intron (NR_110880, intron 2 of 2) 18047 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 30914 chrX 105324105 105324209 + 0 NA intron (NM_017416, intron 5 of 10) intron (NM_017416, intron 5 of 10) -103464 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 24438 chr6 34889125 34889276 + 0 NA promoter-TSS (NM_015245) promoter-TSS (NM_015245) -61 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 15213 chr2 26758122 26758264 + 0 NA Intergenic MER41A|LTR|ERV1 -6081 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 9958 chr15 41402360 41402498 + 0 NA promoter-TSS (NR_045620) promoter-TSS (NR_045620) 31 NR_045620 51103 Hs.106529 NM_016013 ENSG00000137806 NDUFAF1 CGI-65|CGI65|CIA30 NADH:ubiquinone oxidoreductase complex assembly factor 1 protein-coding 14457 chr19 40465870 40465870 + 0 NA promoter-TSS (NM_000713) promoter-TSS (NM_000713) -52 NM_000713 645 Hs.515785 NM_000713 ENSG00000090013 BLVRB BVRB|FLR|HEL-S-10|SDR43U1 biliverdin reductase B protein-coding 28204 chr8 93936024 93936173 + 0 NA Intergenic LTR62|LTR|ERVL 19047 NM_001161781 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 28593 chr8 125271471 125271575 + 0 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -158798 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 2308 chr1 197799330 197799425 + 0 NA Intergenic L1PA15|LINE|L1 -23884 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 7113 chr12 55973832 55973935 + 0 NA promoter-TSS (NM_001252036) promoter-TSS (NM_001252036) -30 NM_001252036 5869 Hs.157659 NM_002868 ENSG00000111540 RAB5B - RAB5B, member RAS oncogene family protein-coding 1063 chr1 67060886 67060990 + 0 NA Intergenic MER65B|LTR|ERV1 -6541 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 UGTREL7 solute carrier family 35 member D1 protein-coding 1567 chr1 115714989 115715080 + 0 NA intron (NM_001232, intron 8 of 10) intron (NM_001232, intron 8 of 10) 53771 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 17241 chr2 229921328 229921432 + 0 NA intron (NM_001284216, intron 1 of 38) CpG 629 NM_001284216 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 1776 chr1 153967681 153967812 + 0 NA promoter-TSS (NM_001255978) promoter-TSS (NM_001255978) -14 NM_014437 27173 Hs.7854 NM_014437 ENSG00000143570 SLC39A1 ZIP1|ZIRTL solute carrier family 39 member 1 protein-coding 12827 chr17 62968543 62968647 + 0 NA Intergenic Intergenic 24380 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 28771 chr8 141001387 141001516 + 0 NA promoter-TSS (NM_001199649) promoter-TSS (NM_001199649) -138 NM_001316342 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 25129 chr6 127366411 127366573 + 0 NA Intergenic Intergenic -22883 NM_001105545 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 22223 chr5 10720067 10720096 + 0 NA intron (NM_004394, intron 2 of 3) HERVL-int|LTR|ERVL 41194 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 18023 chr20 41028604 41028639 + 0 NA promoter-TSS (NM_003286) promoter-TSS (NM_003286) -197 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 8659 chr14 20262942 20263017 + 0 NA Intergenic Intergenic 20187 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 15598 chr2 58562389 58562493 + 0 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 41688 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 25205 chr6 137717564 137717657 + 0 NA Intergenic Intergenic 21427 NR_121618 100507406 Hs.556703 NR_121618 ENSG00000234956 LOC100507406 - uncharacterized LOC100507406 ncRNA 18366 chr20 60496709 60496813 + 0 NA Intergenic Intergenic 18650 NR_039758 100616362 NR_039758 ENSG00000266140 MIR4533 - microRNA 4533 ncRNA 1834 chr1 156090846 156090963 + 0 NA intron (NM_001282625, intron 3 of 12) intron (NM_001282625, intron 3 of 12) 8358 NM_001282625 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 2142 chr1 179164740 179164751 + 0 NA intron (NM_001168237, intron 1 of 12) intron (NM_001168237, intron 1 of 12) -21656 NM_001136000 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 12534 chr17 43170295 43170417 + 0 NA promoter-TSS (NR_110868) promoter-TSS (NR_110868) 47 NR_110868 101929767 Hs.640892 NR_110868 LOC101929767 - uncharacterized LOC101929767 ncRNA 16304 chr2 128805351 128805455 + 0 NA Intergenic MER68|LTR|ERVL -59197 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 30398 chr9 137900115 137900219 + 0 NA intron (NM_001243812, intron 3 of 45) intron (NM_001243812, intron 3 of 45) -7597 NR_121583 100133077 Hs.640081 NR_121583 ENSG00000203987 LOC100133077 - uncharacterized LOC100133077 ncRNA 29448 chr9 86741427 86741598 + 0 NA Intergenic Intergenic 205677 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 25577 chr7 3956166 3956316 + 0 NA intron (NM_152744, intron 7 of 44) intron (NM_152744, intron 7 of 44) -173444 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 19356 chr3 37992805 37992940 + 0 NA promoter-TSS (NM_015873) promoter-TSS (NM_015873) -715 NM_015873 50853 Hs.103665 NM_015873 ENSG00000136059 VILL - villin like protein-coding 30484 chrX 10922294 10922398 + 0 NA Intergenic L2b|LINE|L2 -88656 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 2733 chr1 220093982 220094138 + 0 NA promoter-TSS (NM_018060) promoter-TSS (NM_018060) -53 NM_018060 55699 Hs.262823 NM_018060 ENSG00000067704 IARS2 CAGSSS|ILERS isoleucyl-tRNA synthetase 2, mitochondrial protein-coding 26697 chr7 100177289 100177419 + 0 NA promoter-TSS (NM_152742) promoter-TSS (NM_152742) 72 NM_152742 221914 Hs.211701 NM_152742 ENSG00000213420 GPC2 - glypican 2 protein-coding 25212 chr6 138088584 138088689 + 0 NA 3' UTR (NM_022121, exon 3 of 3) 3' UTR (NM_022121, exon 3 of 3) 18887 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 17824 chr20 25696885 25696989 + 0 NA promoter-TSS (NM_015655) promoter-TSS (NM_015655) -33 NM_015655 26152 Hs.61881 NM_015655 ENSG00000130684 ZNF337 - zinc finger protein 337 protein-coding 10478 chr15 76177756 76177860 + 0 NA intron (NR_120360, intron 2 of 2) intron (NR_120360, intron 2 of 2) 3678 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 7310 chr12 78704302 78704406 + 0 NA Intergenic Intergenic -159639 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 P65|SVP65|SYT synaptotagmin 1 protein-coding 28908 chr9 6006984 6007139 + 0 NA promoter-TSS (NR_039811) promoter-TSS (NR_039811) -765 NR_039811 100616288 NR_039811 ENSG00000263575 MIR4665 mir-4665 microRNA 4665 ncRNA 25487 chr6 168007875 168007947 + 0 NA Intergenic LTR51|LTR|ERV1 -9962 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 4625 chr10 131903767 131903897 + 0 NA intron (NR_033191, intron 2 of 9) intron (NR_033191, intron 2 of 9) 3188 NR_033191 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 24946 chr6 99568638 99568744 + 0 NA 5' UTR (NM_005190, exon 1 of 12) 5' UTR (NM_005190, exon 1 of 12) 123 NM_005190 892 Hs.430646 NM_005190 ENSG00000112237 CCNC CycC cyclin C protein-coding 2326 chr1 198935652 198935802 + 0 NA intron (NR_040073, intron 1 of 2) intron (NR_040073, intron 1 of 2) 1702 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 29543 chr9 92134056 92134170 + 0 NA intron (NR_015444, intron 2 of 12) intron (NR_015444, intron 2 of 12) 1279 NR_015444 100128076 Hs.716275 NR_015444 LOC100128076 - protein tyrosine phosphatase pseudogene pseudo 27706 chr8 38382430 38382534 + 0 NA promoter-TSS (NM_017778) promoter-TSS (NM_017778) -210 NM_017778 54904 Hs.434966 NM_017778 ENSG00000147548 NSD3 KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328 nuclear receptor binding SET domain protein 3 protein-coding 19264 chr3 24494951 24495010 + 0 NA promoter-TSS (NM_000461) promoter-TSS (NM_000461) -158 NM_001252634 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 22394 chr5 37848001 37848105 + 0 NA intron (NR_103441, intron 1 of 3) MLT1H|LTR|ERVL-MaLR 7615 NR_103441 100861519 Hs.536820 NM_001278094 ENSG00000248587 GDNF-AS1 GDNFOS GDNF antisense RNA 1 (head to head) protein-coding 31091 chrX 135264407 135264482 + 0 NA intron (NR_110381, intron 1 of 3) L1MA2|LINE|L1 31595 NM_001185063 7626 Hs.371717 NM_007131 ENSG00000186376 ZNF75D D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28 zinc finger protein 75D protein-coding 6766 chr12 26318691 26318795 + 0 NA Intergenic Intergenic 123170 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 19118 chr3 8501648 8501826 + 0 NA promoter-TSS (NM_001278235) promoter-TSS (NM_001278235) -70 NM_001278233 29995 Hs.475353 NM_014583 ENSG00000071282 LMCD1 - LIM and cysteine rich domains 1 protein-coding 14793 chr19 55071231 55071417 + 0 NA Intergenic Intergenic -1778 NM_138412 112724 Hs.327631 NM_138412 ENSG00000160439 RDH13 SDR7C3 retinol dehydrogenase 13 protein-coding 9571 chr14 92644239 92644343 + 0 NA intron (NM_001319987, intron 4 of 8) intron (NM_001319987, intron 4 of 8) 68057 NM_001319987 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 29914 chr9 113579062 113579166 + 0 NA intron (NM_134427, intron 1 of 4) intron (NM_134427, intron 1 of 4) -1763 NM_001282922 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 28599 chr8 125547120 125547169 + 0 NA Intergenic Intergenic 114935 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 23745 chr5 173455360 173455464 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR 107957 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 14668 chr19 48933485 48933639 + 0 NA promoter-TSS (NM_014475) promoter-TSS (NM_014475) -120 NM_014475 27294 Hs.631555 NM_014475 ENSG00000104808 DHDH 2DD|HUM2DD dihydrodiol dehydrogenase protein-coding 7354 chr12 85465367 85465471 + 0 NA Intergenic Intergenic 185161 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 23821 chr5 179678483 179678537 + 0 NA TTS (NM_001164444) TTS (NM_001164444) 2464 NM_001164444 646019 Hs.535767 NM_001164444 ENSG00000204659 CBY3 - chibby family member 3 protein-coding 21712 chr4 112857615 112857719 + 0 NA intron (NM_001127493, intron 1 of 46) intron (NM_001127493, intron 1 of 46) 39584 NM_001127493 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 22834 chr5 86880973 86881077 + 0 NA Intergenic Intergenic 134207 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 11066 chr16 17275488 17275592 + 0 NA intron (NM_022166, intron 2 of 11) intron (NM_022166, intron 2 of 11) 141036 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 10856 chr16 1343196 1343350 + 0 NA intron (NM_001199096, intron 13 of 32) intron (NM_001199096, intron 13 of 32) 7076 NM_001199096 8938 Hs.458427 NM_003933 ENSG00000007516 BAIAP3 BAP3 BAI1 associated protein 3 protein-coding 11110 chr16 21158555 21158699 + 0 NA non-coding (NR_125971, exon 1 of 7) non-coding (NR_125971, exon 1 of 7) 250 NR_125971 57146 Hs.258212 NM_020422 ENSG00000011638 TMEM159 - transmembrane protein 159 protein-coding 15820 chr2 74188382 74188533 + 0 NA Intergenic LTR27C|LTR|ERV1 -9490 NM_001317110 55233 Hs.602092 NM_018221 ENSG00000114978 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 30183 chr9 128362184 128362348 + 0 NA TTS (NM_005094) TTS (NM_005094) -9053 NM_001135947 81605 Hs.495229 NM_030914 ENSG00000167118 URM1 C9orf74 ubiquitin related modifier 1 protein-coding 22253 chr5 14648692 14648796 + 0 NA Intergenic Intergenic 3638 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 1662 chr1 148278176 148278267 + 0 NA Intergenic AluJb|SINE|Alu -31150 NR_120331 101927468 Hs.515867 NR_120331 LOC101927468 - uncharacterized LOC101927468 ncRNA 21636 chr4 101981854 101981996 + 0 NA intron (NM_001127507, intron 6 of 15) intron (NM_001127507, intron 6 of 15) 168099 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B-cell scaffold protein with ankyrin repeats 1 protein-coding 10931 chr16 3509623 3509748 + 0 NA promoter-TSS (NM_024793) promoter-TSS (NM_024793) -209 NM_024793 23059 Hs.155995 NM_015041 ENSG00000103351 CLUAP1 CFAP22|FAP22|IFT38 clusterin associated protein 1 protein-coding 28270 chr8 98117159 98117272 + 0 NA promoter-TSS (NM_015029) promoter-TSS (NM_015029) -25 NM_005836 10247 Hs.18426 NM_005836 ENSG00000132541 RIDA HRSP12|P14.5|PSP|UK114 reactive intermediate imine deaminase A homolog protein-coding 9297 chr14 69685393 69685497 + 0 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) 73852 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 14951 chr2 8837560 8837710 + 0 NA promoter-TSS (NM_020738) promoter-TSS (NM_020738) -10 NM_020738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS kinase D interacting substrate 220 protein-coding 8551 chr13 105919213 105919353 + 0 NA Intergenic Intergenic 212453 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 15123 chr2 19538494 19538635 + 0 NA Intergenic Intergenic -179953 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transciption factor 1 protein-coding 30139 chr9 127388437 127388544 + 0 NA intron (NM_032293, intron 25 of 27) intron (NM_032293, intron 25 of 27) -8648 NM_001271712 29988 Hs.179522 NM_014580 ENSG00000136856 SLC2A8 GLUT8|GLUTX1 solute carrier family 2 member 8 protein-coding 19340 chr3 36679555 36679659 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger 60254 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 6985 chr12 50085107 50085162 + 0 NA promoter-TSS (NM_139071) promoter-TSS (NM_139071) -66 NM_139071 6602 Hs.79335 NM_003076 ENSG00000066117 SMARCD1 BAF60A|CRACD1|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein-coding 23320 chr5 139403841 139403898 + 0 NA intron (NM_194296, intron 1 of 5) CpG 218 NM_194296 202051 Hs.373612 NM_194296 ENSG00000170469 SPATA24 CCDC161|T6441 spermatogenesis associated 24 protein-coding 18434 chr21 17819321 17819425 + 0 NA promoter-TSS (NM_001100420) promoter-TSS (NM_001100420) 13 NM_017447 54149 Hs.293811 NM_017447 ENSG00000154642 C21orf91 C21orf14|C21orf38|CSSG1|EURL|YG81 chromosome 21 open reading frame 91 protein-coding 13530 chr18 48410300 48410448 + 0 NA promoter-TSS (NM_001318841) promoter-TSS (NM_001318841) -952 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 6813 chr12 30695910 30696027 + 0 NA promoter-TSS (NM_006390) promoter-TSS (NM_006390) 27 NM_006390 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 13913 chr19 2944980 2945106 + 0 NA promoter-TSS (NM_021217) promoter-TSS (NM_021217) -72 NM_021217 58492 Hs.38004 NM_021217 ENSG00000175691 ZNF77 pT1 zinc finger protein 77 protein-coding 28926 chr9 12860077 12860181 + 0 NA Intergenic Intergenic -45740 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 24989 chr6 108689424 108689502 + 0 NA Intergenic Intergenic -62191 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 566 chr1 32963844 32963975 + 0 NA intron (NM_001127361, intron 1 of 8) intron (NM_001127361, intron 1 of 8) 904 NM_153341 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 9876 chr15 36612451 36612654 + 0 NA intron (NM_001290232, intron 1 of 10) intron (NM_001290232, intron 1 of 10) 17683 NM_032499 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 14266 chr19 18373962 18374065 + 0 NA Intergenic Intergenic -11947 NM_004864 9518 Hs.616962 NM_004864 ENSG00000130513 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 15802 chr2 73214125 73214229 + 0 NA promoter-TSS (NM_006062) promoter-TSS (NM_006062) -61 NM_006062 10322 Hs.631882 NM_006062 ENSG00000135632 SMYD5 NN8-4AG|RAI15|RRG1|ZMYND23 SMYD family member 5 protein-coding 12359 chr17 35142142 35142166 + 0 NA promoter-TSS (NM_001014445) promoter-TSS (NM_001014445) 97 NM_001014445 54475 Hs.85570 NM_018096 ENSG00000073536 NLE1 Nle notchless homolog 1 protein-coding 14974 chr2 9710358 9710462 + 0 NA Intergenic LTR45B|LTR|ERV1 -79355 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 25220 chr6 138773647 138773769 + 0 NA promoter-TSS (NM_001242740) promoter-TSS (NM_001242740) -29 NM_001242740 100507462 Hs.571054 NM_001242740 ENSG00000279968 GVQW2 - GVQW motif containing 2 protein-coding 21371 chr4 53917897 53918008 + 0 NA Intergenic Intergenic 69330 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 13637 chr18 57902103 57902207 + 0 NA Intergenic Intergenic -99060 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 20036 chr3 122893424 122893528 + 0 NA Intergenic Intergenic 6963 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 19129 chr3 8964929 8965033 + 0 NA Intergenic Intergenic -1506 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18, E3 ubiquitin protein ligase protein-coding 16697 chr2 175930707 175930758 + 0 NA intron (NM_001305009, intron 13 of 13) intron (NM_001305009, intron 13 of 13) 71613 NM_001305010 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|Ul|ulnaless lunapark, ER junction formation factor protein-coding 23200 chr5 132227516 132227620 + 0 NA promoter-TSS (NM_001017973) promoter-TSS (NM_001017973) 295 NM_001142598 8974 Hs.519568 NM_004199 ENSG00000072682 P4HA2 MYP25 prolyl 4-hydroxylase subunit alpha 2 protein-coding 5687 chr11 76444688 76444826 + 0 NA promoter-TSS (NM_001300942) promoter-TSS (NM_001300942) -268 NM_001300943 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY, BRCA2 interacting transcriptional repressor protein-coding 2765 chr1 221961876 221961980 + 0 NA Intergenic LTR49-int|LTR|ERV1 -121262 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 11850 chr16 89560514 89560665 + 0 NA promoter-TSS (NM_000977) promoter-TSS (NM_000977) -68 NM_001243131 6137 Hs.410817 NM_000977 ENSG00000167526 RPL13 BBC1|D16S444E|D16S44E|L13 ribosomal protein L13 protein-coding 108 chr1 7961514 7961636 + 0 NA promoter-TSS (NM_001123377) promoter-TSS (NM_001123377) -79 NM_007262 11315 Hs.419640 NM_007262 ENSG00000116288 PARK7 DJ-1|DJ1|HEL-S-67p Parkinsonism associated deglycase protein-coding 8543 chr13 105443006 105443193 + 0 NA Intergenic Intergenic -22768 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 18683 chr22 23177416 23177520 + 0 NA Intergenic L2a|LINE|L2 -2897 NM_021574 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR, RhoGEF and GTPase activating protein protein-coding 17419 chr20 341767 341871 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR -4907 NM_001323679 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 15116 chr2 18560654 18560806 + 0 NA promoter-TSS (NM_020905) promoter-TSS (NM_020905) -37 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding 18358 chr20 60078505 60078639 + 0 NA Intergenic Intergenic -9114 NR_109917 729296 Hs.534781 NR_109916 LOC729296 - uncharacterized LOC729296 ncRNA 20375 chr3 149580218 149580322 + 0 NA intron (NM_001168278, intron 3 of 7) intron (NM_001168278, intron 3 of 7) 77755 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 18353 chr20 59940255 59940419 + 0 NA promoter-TSS (NM_001190827) promoter-TSS (NM_001190827) -40 NM_006242 5509 Hs.42215 NM_006242 ENSG00000132825 PPP1R3D PPP1R6 protein phosphatase 1 regulatory subunit 3D protein-coding 6475 chr12 4604836 4605022 + 0 NA promoter-TSS (NM_001282285) promoter-TSS (NM_001282285) 66 NM_001282285 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 15423 chr2 42420999 42421092 + 0 NA Intergenic MamSINE1|SINE|tRNA-RTE -52088 NM_001319036 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 21666 chr4 105633388 105633501 + 0 NA intron (NM_001242729, intron 4 of 13) intron (NM_001242729, intron 4 of 13) 71853 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 17602 chr20 11047627 11047678 + 0 NA Intergenic Intergenic -138380 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 2623 chr1 212035598 212035751 + 0 NA promoter-TSS (NM_001199809) promoter-TSS (NM_001199809) -14 NM_001199809 25896 Hs.369285 NM_015434 ENSG00000143493 INTS7 C1orf73|INT7 integrator complex subunit 7 protein-coding 13744 chr18 68263074 68263096 + 0 NA Intergenic Intergenic 452031 NM_019022 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 26993 chr7 129845565 129845632 + 0 NA intron (NM_182697, intron 3 of 4) intron (NM_182697, intron 3 of 4) -70584 NR_029615 406959 NR_029615 ENSG00000207691 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 18263 chr20 53926736 53926868 + 0 NA Intergenic Intergenic -51093 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 330 chr1 21956982 21957161 + 0 NA Intergenic Intergenic -19774 NM_005529 3339 Hs.562227 NM_005529 ENSG00000142798 HSPG2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 heparan sulfate proteoglycan 2 protein-coding 20679 chr3 174863632 174863748 + 0 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 4369 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 26703 chr7 100429226 100429363 + 0 NA promoter-TSS (NM_001258008) promoter-TSS (NM_001258008) -337 NM_019606 56257 Hs.178011 NM_019606 ENSG00000146834 MEPCE BCDIN3 methylphosphate capping enzyme protein-coding 21541 chr4 85474929 85475147 + 0 NA promoter-TSS (NM_001025616) promoter-TSS (NM_001025616) -93 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 18803 chr22 31290720 31290898 + 0 NA intron (NM_052880, intron 3 of 5) CpG 1725 NM_001135911 113791 Hs.26670 NM_052880 ENSG00000100100 PIK3IP1 HGFL|hHGFL(S) phosphoinositide-3-kinase interacting protein 1 protein-coding 29436 chr9 86106990 86107146 + 0 NA Intergenic Intergenic -6867 NM_177937 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 9156 chr14 61562080 61562184 + 0 NA non-coding (NR_110416, exon 4 of 5) non-coding (NR_110416, exon 4 of 5) 8062 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 11812 chr16 87388453 87388589 + 0 NA intron (NM_001282683, intron 2 of 9) (AGAGG)n|Simple_repeat|Simple_repeat 3586 NM_001282683 79791 Hs.567582 NM_024735 ENSG00000103264 FBXO31 FBX14|FBXO14|Fbx31|MRT45|pp2386 F-box protein 31 protein-coding 26912 chr7 121289030 121289108 + 0 NA intron (NM_024913, intron 22 of 22) intron (NM_024913, intron 22 of 22) -36298 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 10562 chr15 82047042 82047200 + 0 NA promoter-TSS (NM_032246) promoter-TSS (NM_032246) -978 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 14008 chr19 6737889 6737987 + 0 NA promoter-TSS (NM_001080452) promoter-TSS (NM_001080452) -316 NM_001080452 56927 Hs.167641 NM_020171 ENSG00000125734 GPR108 LUSTR2 G protein-coupled receptor 108 protein-coding 7475 chr12 96501156 96501260 + 0 NA intron (NM_001306084, intron 2 of 67) intron (NM_001306084, intron 2 of 67) 11637 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 3160 chr1 248838050 248838260 + 0 NA promoter-TSS (NM_024836) promoter-TSS (NM_024836) -23 NM_024836 79894 Hs.521151 NM_024836 ENSG00000171161 ZNF672 - zinc finger protein 672 protein-coding 8449 chr13 95115699 95115803 + 0 NA intron (NM_001105515, intron 20 of 20) intron (NM_001105515, intron 20 of 20) 155710 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 10993 chr16 9871096 9871200 + 0 NA intron (NM_000833, intron 5 of 13) intron (NM_000833, intron 5 of 13) 310919 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 29586 chr9 94374460 94374615 + 0 NA promoter-TSS (NM_032558) promoter-TSS (NM_032558) -14 NM_032558 84641 Hs.555996 NM_032558 ENSG00000148110 MFSD14B HIATL1 major facilitator superfamily domain containing 14B protein-coding 26863 chr7 116177053 116177157 + 0 NA Intergenic Intergenic -33388 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 2321 chr1 198657971 198658075 + 0 NA intron (NM_001267798, intron 2 of 3) intron (NM_001267798, intron 2 of 3) 19055 NM_002838 5788 Hs.654514 NM_002838 ENSG00000081237 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type C protein-coding 20752 chr3 180306854 180306912 + 0 NA Intergenic MamTip3|DNA|hAT-Tip100 -107290 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 13873 chr19 1773355 1773505 + 0 NA intron (NM_001080488, intron 1 of 1) intron (NM_001080488, intron 1 of 1) 19767 NM_001080488 390874 Hs.654347 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 24209 chr6 25998592 25998696 + 0 NA Intergenic Intergenic 19168 NM_005325 3024 Hs.150206 NM_005325 ENSG00000124610 HIST1H1A H1.1|H1A|H1F1|HIST1 histone cluster 1 H1 family member a protein-coding 23345 chr5 140344791 140344867 + 0 NA intron (NM_001945, intron 2 of 5) intron (NM_001945, intron 2 of 5) 1774 NM_001945 1839 Hs.799 NM_001945 ENSG00000113070 HBEGF DTR|DTS|DTSF|HEGFL heparin binding EGF like growth factor protein-coding 7517 chr12 100230010 100230133 + 0 NA intron (NR_135073, intron 9 of 10) HAL1ME|LINE|L1 29294 NR_048569 64431 Hs.115088 NM_022496 ENSG00000075089 ACTR6 ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX ARP6 actin-related protein 6 homolog protein-coding 15046 chr2 12857113 12857130 + 0 NA Intergenic Intergenic 119754 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 29135 chr9 69171139 69171264 + 0 NA intron (NM_001170414, intron 2 of 21) L2b|LINE|L2 -2854 NM_201629 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 27758 chr8 43050757 43050861 + 0 NA Intergenic L1ME3B|LINE|L1 -5490 NR_033698 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 26875 chr7 116512195 116512277 + 0 NA Intergenic Intergenic 12192 NM_001206748 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 15145 chr2 20232932 20233090 + 0 NA Intergenic Intergenic -7578 NM_001006946 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 7872 chr12 126668684 126668794 + 0 NA intron (NR_110034, intron 1 of 2) MIR|SINE|MIR 21579 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 29873 chr9 111794947 111795099 + 0 NA promoter-TSS (NR_109816) promoter-TSS (NR_109816) -15 NR_109816 158401 Hs.428209 NM_173521 ENSG00000165181 C9orf84 - chromosome 9 open reading frame 84 protein-coding 26241 chr7 48299753 48299857 + 0 NA intron (NM_152701, intron 23 of 61) intron (NM_152701, intron 23 of 61) 128345 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 13962 chr19 4812955 4813059 + 0 NA Intergenic L2a|LINE|L2 18735 NM_182919 148022 Hs.29344 NM_014261 ENSG00000127666 TICAM1 IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF toll like receptor adaptor molecule 1 protein-coding 24592 chr6 43436636 43436773 + 0 NA intron (NM_033450, intron 4 of 19) intron (NM_033450, intron 4 of 19) 2162 NR_106894 102466746 NR_106894 ENSG00000276770 MIR6780B hsa-mir-6780b microRNA 6780b ncRNA 3506 chr10 29951855 29951857 + 0 NA Intergenic Intergenic 107703 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 4587 chr10 126350712 126350801 + 0 NA intron (NM_001288973, intron 1 of 22) MIRc|SINE|MIR 37802 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 10027 chr15 45456672 45456847 + 0 NA Intergenic Intergenic 23709 NR_030599 100126311 NR_030599 ENSG00000166920 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 31170 chrX 153668022 153668166 + 0 NA Intergenic Intergenic 5194 NM_001135740 139728 Hs.436667 NM_198452 ENSG00000130822 PNCK BSTK3|CaMK1b pregnancy up-regulated nonubiquitous CaM kinase protein-coding 27038 chr7 133853782 133853926 + 0 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) -28966 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 19396 chr3 41117665 41117728 + 0 NA Intergenic Intergenic -81728 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 24824 chr6 79545121 79545257 + 0 NA Intergenic Intergenic -7759 NM_001122769 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 LCA5, lebercilin protein-coding 22038 chr4 176195601 176195705 + 0 NA promoter-TSS (NM_144644) promoter-TSS (NM_144644) 18 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 30575 chrX 24054301 24054392 + 0 NA promoter-TSS (NM_001415) promoter-TSS (NM_001415) -602 NM_001415 1968 Hs.539684 NM_001415 ENSG00000130741 EIF2S3 EIF2|EIF2G|EIF2gamma|MRXSBRK|eIF-2gA eukaryotic translation initiation factor 2 subunit gamma protein-coding 682 chr1 39491527 39491534 + 0 NA promoter-TSS (NM_181809) promoter-TSS (NM_181809) -116 NM_181809 353500 Hs.472497 NM_181809 ENSG00000183682 BMP8A - bone morphogenetic protein 8a protein-coding 2971 chr1 233613817 233614039 + 0 NA promoter-TSS (NM_002245) promoter-TSS (NM_002245) -76 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 375 chr1 24294892 24294995 + 0 NA Intergenic Intergenic -24379 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 15038 chr2 12507386 12507490 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -209434 NR_027303 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 8971 chr14 50116591 50116738 + 0 NA promoter-TSS (NM_001040662) promoter-TSS (NM_001040662) -85 NM_024558 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 20463 chr3 155391614 155391718 + 0 NA Intergenic Intergenic -97966 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 16758 chr2 181037362 181037466 + 0 NA intron (NM_006357, intron 3 of 5) Tigger3b|DNA|TcMar-Tigger 56290 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 10933 chr16 3717497 3717656 + 0 NA promoter-TSS (NM_001272049) promoter-TSS (NM_001272049) 21 NM_016292 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 30363 chr9 136644543 136644647 + 0 NA Intergenic Intergenic -14261 NR_046367 51162 Hs.91481 NM_016215 ENSG00000172889 EGFL7 NEU1|VE-STATIN|ZNEU1 EGF like domain multiple 7 protein-coding 30987 chrX 115560490 115560594 + 0 NA promoter-TSS (NM_001282337) promoter-TSS (NM_001282337) -308 NM_001282337 5358 Hs.496622 NM_005032 ENSG00000102024 PLS3 BMND18|T-plastin plastin 3 protein-coding 18256 chr20 53805984 53805988 + 0 NA Intergenic L2b|LINE|L2 69723 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 14254 chr19 17996964 17997073 + 0 NA intron (NM_002248, intron 10 of 10) intron (NM_002248, intron 10 of 10) -4114 NM_001025604 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 23765 chr5 175478449 175478602 + 0 NA promoter-TSS (NM_001322978) promoter-TSS (NM_001322978) 27 NM_001322978 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 TCC sideroflexin 1 protein-coding 16267 chr2 127064880 127064924 + 0 NA intron (NM_139349, intron 6 of 14) intron (NM_139349, intron 6 of 14) 17163 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 25661 chr7 7640562 7640720 + 0 NA promoter-TSS (NM_001302350) promoter-TSS (NM_001302350) 5 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 24293 chr6 28982033 28982177 + 0 NA Intergenic Intergenic -2644 NR_135289 414766 Hs.571153 NR_135289 HCG16 HCG15 HLA complex group 16 (non-protein coding) ncRNA 22433 chr5 40641513 40641617 + 0 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -38365 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 22701 chr5 72320194 72320399 + 0 NA promoter-TSS (NM_001286748) promoter-TSS (NM_001286748) -39 NM_015084 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 15289 chr2 30136909 30137013 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -9923 NM_001127400 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 29257 chr9 74952850 74952995 + 0 NA promoter-TSS (NM_017998) promoter-TSS (NM_017998) -36 NM_017998 55071 Hs.532296 NM_017998 ENSG00000135045 C9orf40 - chromosome 9 open reading frame 40 protein-coding 2650 chr1 213051191 213051327 + 0 NA promoter-TSS (NM_001287219) promoter-TSS (NM_001287219) 26 NM_001287219 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 155 chr1 10694689 10694848 + 0 NA intron (NM_017766, intron 3 of 15) CpG-426 101908 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 26824 chr7 111562460 111562605 + 0 NA promoter-TSS (NM_001244606) promoter-TSS (NM_001244606) -15 NM_001244606 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 11837 chr16 88782531 88782635 + 0 NA intron (NM_001142864, intron 1 of 50) intron (NM_001142864, intron 1 of 50) 2637 NM_001142864 9780 Hs.377001 NM_001142864 ENSG00000103335 PIEZO1 DHS|FAM38A|LMPH3|Mib piezo type mechanosensitive ion channel component 1 protein-coding 13295 chr18 21612248 21612386 + 0 NA promoter-TSS (NM_001291916) promoter-TSS (NM_001291916) 48 NM_006938 6632 Hs.464734 NM_006938 ENSG00000167088 SNRPD1 HsT2456|SMD1|SNRPD|Sm-D1 small nuclear ribonucleoprotein D1 polypeptide protein-coding 17760 chr20 22743657 22743750 + 0 NA Intergenic Intergenic -136186 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 16345 chr2 133477737 133477841 + 0 NA intron (NM_207481, intron 3 of 17) MER44B|DNA|TcMar-Tigger 90671 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 12551 chr17 44066632 44066747 + 0 NA 5' UTR (NM_152344, exon 2 of 6) 5' UTR (NM_152344, exon 2 of 6) 930 NM_152344 124801 Hs.355570 NM_152344 ENSG00000161654 LSM12 PNAS-135 LSM12 homolog protein-coding 27184 chr7 148242415 148242568 + 0 NA intron (NM_014141, intron 20 of 23) intron (NM_014141, intron 20 of 23) -348074 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 18196 chr20 50744594 50744698 + 0 NA intron (NM_032521, intron 2 of 2) L2c|LINE|L2 13102 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 9454 chr14 80391013 80391132 + 0 NA intron (NR_038355, intron 5 of 8) intron (NR_038355, intron 5 of 8) -160018 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 13630 chr18 57712457 57712671 + 0 NA intron (NM_005603, intron 2 of 27) L1M1|LINE|L1 82262 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 13724 chr18 63936231 63936369 + 0 NA TTS (NM_005024) TTS (NM_005024) -13054 NM_001123366 284293 Hs.721604 NM_001123366 ENSG00000221887 HMSD ACC-6|ACC6|C18orf53|HSMD-v histocompatibility minor serpin domain containing protein-coding 28146 chr8 86522582 86522738 + 0 NA intron (NM_003909, intron 2 of 16) intron (NM_003909, intron 2 of 16) 8233 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 26980 chr7 128893223 128893374 + 0 NA exon (NM_001135914, exon 11 of 36) exon (NM_001135914, exon 11 of 36) 17421 NM_001135914 375616 Hs.371746 NM_199349 ENSG00000135253 KCP CRIM2|KCP1|NET67 kielin/chordin-like protein protein-coding 25588 chr7 4775499 4775643 + 0 NA promoter-TSS (NM_014855) promoter-TSS (NM_014855) -60 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 zeta 1 subunit protein-coding 7726 chr12 118498289 118498444 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR 121813 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 15549 chr2 54073985 54074089 + 0 NA intron (NM_001320586, intron 4 of 6) L1MB8|LINE|L1 -41236 NM_138448 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 1156 chr1 78617727 78617831 + 0 NA Intergenic LTR41|LTR|ERVL -2603 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 19400 chr3 41268157 41268269 + 0 NA intron (NR_136342, intron 33 of 34) intron (NR_136342, intron 33 of 34) 68762 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 29321 chr9 78462646 78462814 + 0 NA Intergenic Intergenic 165655 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 20936 chr3 190232115 190232219 + 0 NA Intergenic MamGypsy2-I|LTR|Gypsy 90279 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 12505 chr17 41811722 41811807 + 0 NA promoter-TSS (NM_021939) promoter-TSS (NM_021939) 435 NM_006455 10609 Hs.446459 NM_006455 ENSG00000141696 P3H4 LEPREL4|NO55|NOL55|SC65 prolyl 3-hydroxylase family member 4 (non-enzymatic) protein-coding 11141 chr16 23557563 23557667 + 0 NA promoter-TSS (NM_019116) promoter-TSS (NM_019116) 74 NM_019116 56061 Hs.3459 NM_019116 ENSG00000103353 UBFD1 UBPH ubiquitin family domain containing 1 protein-coding 18438 chr21 25734957 25735117 + 0 NA promoter-TSS (NM_001197297) promoter-TSS (NM_001197297) 19 NM_002040 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor alpha subunit protein-coding 9536 chr14 90256431 90256580 + 0 NA promoter-TSS (NM_002802) promoter-TSS (NM_002802) -45 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 10851 chr16 1037120 1037224 + 0 NA Intergenic Intergenic -35584 NM_001172560 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 30146 chr9 127545677 127545781 + 0 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 23388 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 5023 chr11 25211807 25211877 + 0 NA Intergenic L1PBa|LINE|L1 714872 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 23511 chr5 150357535 150357617 + 0 NA promoter-TSS (NM_001195141) promoter-TSS (NM_001195141) -63 NM_001135244 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 7295 chr12 77087546 77087650 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -22018 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 27974 chr8 66775178 66775373 + 0 NA promoter-TSS (NM_170709) promoter-TSS (NM_170709) 94 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 5012 chr11 23113216 23113357 + 0 NA Intergenic LTR18B|LTR|ERVL -252860 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 13991 chr19 6057419 6057523 + 0 NA intron (NM_134433, intron 1 of 16) MIRc|SINE|MIR 53182 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 13741 chr18 67600305 67600409 + 0 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -83627 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4 dermatan sulfate epimerase-like protein-coding 30122 chr9 126662476 126662616 + 0 NA intron (NM_002316, intron 2 of 7) intron (NM_002316, intron 2 of 7) 48103 NM_002316 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 26783 chr7 106071420 106071648 + 0 NA Intergenic Intergenic 40811 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 23968 chr6 7479963 7480021 + 0 NA Intergenic Intergenic -61583 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 15782 chr2 71276622 71276657 + 0 NA Intergenic CpG -49536 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 30046 chr9 121700331 121700364 + 0 NA intron (NM_032552, intron 3 of 16) intron (NM_032552, intron 3 of 16) -42438 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 10524 chr15 79896748 79896852 + 0 NA non-coding (NR_037654, exon 1 of 3) non-coding (NR_037654, exon 1 of 3) 197 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268 methenyltetrahydrofolate synthetase protein-coding 26790 chr7 106425213 106425232 + 0 NA Intergenic Intergenic -140030 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 4533 chr10 122339025 122339167 + 0 NA TTS (NM_001318189) TTS (NM_001318189) -35482 NM_001001974 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 21445 chr4 74157941 74158092 + 0 NA promoter-TSS (NM_001144978) promoter-TSS (NM_001144978) -92 NM_001004346 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like protein-coding 22069 chr4 182307896 182308000 + 0 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 64517 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 8041 chr13 29693713 29693729 + 0 NA Intergenic Intergenic 46028 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 23175 chr5 129852930 129853034 + 0 NA Intergenic Intergenic -51848 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 9463 chr14 80931232 80931269 + 0 NA intron (NM_152446, intron 1 of 23) Charlie3|DNA|hAT-Charlie 8290 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 30098 chr9 124853185 124853222 + 0 NA promoter-TSS (NM_001045476) promoter-TSS (NM_001045476) -214 NM_001276376 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 7640 chr12 109999104 109999208 + 0 NA promoter-TSS (NM_033121) promoter-TSS (NM_033121) -274 NM_033121 88455 Hs.528703 NM_033121 ENSG00000076513 ANKRD13A ANKRD13|NY-REN-25 ankyrin repeat domain 13A protein-coding 20843 chr3 185354334 185354438 + 0 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) -8662 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 27143 chr7 142516232 142516336 + 0 NA Intergenic Intergenic -150015 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 28963 chr9 19408799 19408892 + 0 NA promoter-TSS (NM_001010887) promoter-TSS (NM_001010887) -82 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 17316 chr2 234949828 234949982 + 0 NA Intergenic Intergenic -2079 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 6605 chr12 11649631 11649723 + 0 NA promoter-TSS (NM_001987) promoter-TSS (NM_001987) -177 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 7973 chr13 23979710 23979751 + 0 NA non-coding (NR_104595, exon 1 of 5) non-coding (NR_104595, exon 1 of 5) 104 NR_104595 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 3307 chr10 13770084 13770219 + 0 NA intron (NM_018027, intron 6 of 24) intron (NM_018027, intron 6 of 24) -62584 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 30996 chrX 118345844 118345979 + 0 NA promoter-TSS (NM_001184965) promoter-TSS (NM_001184965) -162 NM_001184965 54521 Hs.98510 NM_019045 ENSG00000131725 WDR44 RAB11BP|RPH11 WD repeat domain 44 protein-coding 20103 chr3 128153323 128153476 + 0 NA promoter-TSS (NM_021937) promoter-TSS (NM_021937) -58 NM_021937 60678 Hs.477498 NM_021937 ENSG00000132394 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA specific protein-coding 12921 chr17 70405832 70405936 + 0 NA Intergenic Intergenic 236349 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 2453 chr1 204171887 204172012 + 0 NA Intergenic Intergenic -5612 NM_000537 5972 Hs.3210 NM_000537 ENSG00000143839 REN HNFJ2 renin protein-coding 9052 chr14 55127736 55127785 + 0 NA Intergenic Intergenic -1457 NM_001177388 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 13922 chr19 3142075 3142179 + 0 NA non-coding (NR_110670, exon 4 of 4) non-coding (NR_110670, exon 4 of 4) 6095 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 G protein subunit alpha 15 protein-coding 29408 chr9 84940397 84940492 + 0 NA intron (NM_001018064, intron 13 of 16) intron (NM_001018064, intron 13 of 16) 270067 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 665 chr1 38858944 38859037 + 0 NA intron (NM_022157, intron 1 of 6) intron (NM_022157, intron 1 of 6) 833 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 16414 chr2 144102481 144102623 + 0 NA intron (NM_001284235, intron 6 of 6) L3|LINE|CR1 109027 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 21869 chr4 145734687 145734849 + 0 NA Intergenic Intergenic 54564 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 24010 chr6 10300231 10300335 + 0 NA Intergenic Intergenic -112035 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 1207 chr1 85278990 85279002 + 0 NA TTS (NR_045484) TTS (NR_045484) -2092 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 3007 chr1 235079621 235079790 + 0 NA Intergenic Intergenic -9887 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 27787 chr8 48628669 48628851 + 0 NA intron (NR_105002, intron 2 of 3) L1MC3|LINE|L1 8357 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 22594 chr5 59786602 59786756 + 0 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -18067 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 18329 chr20 58209976 58210153 + 0 NA Intergenic Intergenic 18589 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 17435 chr20 856485 856602 + 0 NA Intergenic Intergenic 11935 NM_031424 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 27336 chr8 6894980 6895084 + 0 NA Intergenic MIR3|SINE|MIR -17025 NM_005218 1672 Hs.32949 NM_005218 ENSG00000164825 DEFB1 BD1|DEFB-1|DEFB101|HBD1 defensin beta 1 protein-coding 8238 chr13 47397892 47397913 + 0 NA Intergenic Intergenic -500826 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 14077 chr19 10461428 10461532 + 0 NA intron (NM_006202, intron 6 of 9) intron (NM_006202, intron 6 of 9) 8523 NM_006202 5141 Hs.89901 NM_006202 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A protein-coding 25789 chr7 19664144 19664248 + 0 NA Intergenic L1MB5|LINE|L1 41240 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 15040 chr2 12588387 12588491 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -128433 NR_027303 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 15579 chr2 55843257 55843434 + 0 NA Intergenic Intergenic 80818 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin like extracellular matrix protein 1 protein-coding 12315 chr17 31489843 31489947 + 0 NA intron (NM_001346748, intron 1 of 12) intron (NM_001346748, intron 1 of 12) 1894 NM_001346747 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 8176 chr13 42041244 42041435 + 0 NA intron (NM_001204504, intron 1 of 29) CpG 1303 NM_001204504 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 20876 chr3 186922956 186923060 + 0 NA Intergenic Intergenic -7518 NM_173216 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 20181 chr3 133644890 133645051 + 0 NA intron (NM_007027, intron 10 of 27) MIR|SINE|MIR 16923 NM_007027 11073 Hs.593379 NM_007027 ENSG00000163781 TOPBP1 TOP2BP1 topoisomerase (DNA) II binding protein 1 protein-coding 1028 chr1 64744881 64745047 + 0 NA promoter-TSS (NM_018211) promoter-TSS (NM_018211) -131 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 13690 chr18 62445644 62445717 + 0 NA Intergenic Intergenic -77745 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 15653 chr2 64144440 64144544 + 0 NA promoter-TSS (NM_020651) promoter-TSS (NM_020651) -21 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 198 chr1 14765839 14765943 + 0 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -158238 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 13465 chr18 41325208 41325237 + 0 NA Intergenic LTR8B|LTR|ERV1 195375 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 2550 chr1 209219081 209219125 + 0 NA Intergenic Intergenic -106353 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 13238 chr18 5296291 5296337 + 0 NA promoter-TSS (NM_001243702) promoter-TSS (NM_001243702) -119 NM_001143823 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 26648 chr7 97117572 97117676 + 0 NA 5' UTR (NM_020186, exon 1 of 2) 5' UTR (NM_020186, exon 1 of 2) 1031 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 6240 chr11 122656514 122656518 + 0 NA intron (NM_032873, intron 1 of 13) CpG 826 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 29093 chr9 37465671 37465775 + 0 NA promoter-TSS (NM_014872) promoter-TSS (NM_014872) -313 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 22441 chr5 40798256 40798407 + 0 NA promoter-TSS (NM_206907) promoter-TSS (NM_206907) -136 NM_006251 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 20115 chr3 129120689 129120828 + 0 NA intron (NM_001204890, intron 11 of 12) intron (NM_001204890, intron 11 of 12) 1046 NM_198490 339122 Hs.381132 NM_198490 ENSG00000172780 RAB43 RAB11B|RAB41 RAB43, member RAS oncogene family protein-coding 13250 chr18 9017187 9017320 + 0 NA Intergenic Intergenic -85377 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 13576 chr18 50836669 50836748 + 0 NA Intergenic Intergenic -11324 NM_001127174 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 24651 chr6 47477733 47477865 + 0 NA promoter-TSS (NM_012120) promoter-TSS (NM_012120) 10 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 28606 chr8 125701883 125701987 + 0 NA Intergenic Intergenic 249262 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 3983 chr10 80204415 80204519 + 0 NA promoter-TSS (NM_001278408) promoter-TSS (NM_001278408) 24 NM_001278408 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ANX11|CAP50 annexin A11 protein-coding 19917 chr3 113848168 113848352 + 0 NA intron (NM_017577, intron 2 of 17) MIRc|SINE|MIR 9426 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 27076 chr7 137953839 137953943 + 0 NA intron (NM_001243523, intron 1 of 3) intron (NM_001243523, intron 1 of 3) 543 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 29694 chr9 99821723 99821902 + 0 NA promoter-TSS (NM_173199) promoter-TSS (NM_173199) -43 NM_173199 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 4436 chr10 117442187 117442291 + 0 NA Intergenic Intergenic -66772 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 2468 chr1 204516289 204516441 + 0 NA promoter-TSS (NM_001278519) promoter-TSS (NM_001278519) -14 NM_001278518 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 17194 chr2 225513022 225513126 + 0 NA intron (NM_020864, intron 2 of 5) intron (NM_020864, intron 2 of 5) 112188 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 15351 chr2 36785250 36785354 + 0 NA intron (NM_053276, intron 11 of 15) MER5A1|DNA|hAT-Charlie 88612 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT - vitrin protein-coding 20564 chr3 161316415 161316555 + 0 NA Intergenic Intergenic 55598 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 20903 chr3 189132496 189132633 + 0 NA Intergenic Intergenic -39410 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 30655 chrX 46325490 46325536 + 0 NA TTS (NR_110388) TTS (NR_110388) 2161 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 1819 chr1 155563151 155563257 + 0 NA promoter-TSS (NM_018489) promoter-TSS (NM_018489) -671 NM_018489 55870 Hs.491060 NM_018489 ENSG00000116539 ASH1L ASH1|ASH1L1|KMT2H ASH1 like histone lysine methyltransferase protein-coding 14697 chr19 49641834 49642058 + 0 NA promoter-TSS (NM_021228) promoter-TSS (NM_021228) -179 NM_021228 58506 Hs.103521 NM_021228 ENSG00000126461 SCAF1 SRA1 SR-related CTD associated factor 1 protein-coding 29614 chr9 95383383 95383487 + 0 NA Intergenic Intergenic -65726 NM_001243744 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC Fanconi anemia complementation group C protein-coding 5761 chr11 83836902 83837039 + 0 NA intron (NM_001142699, intron 16 of 27) L1MDa|LINE|L1 -154545 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 9211 chr14 64806656 64806719 + 0 NA intron (NM_000347, intron 1 of 30) L2b|LINE|L2 16461 NM_000347 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 8958 chr14 49862883 49863028 + 0 NA promoter-TSS (NR_027260) promoter-TSS (NR_027260) -106 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA, 7SL, cytoplasmic 2 ncRNA 24186 chr6 22892549 22892653 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -174677 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 6292 chr11 125888140 125888201 + 0 NA intron (NM_001134793, intron 1 of 2) CpG 1110 NM_001134793 219844 Hs.98133 NM_145014 ENSG00000198331 HYLS1 HLS HYLS1, centriolar and ciliogenesis associated protein-coding 10548 chr15 80989789 80989959 + 0 NA promoter-TSS (NM_015154) promoter-TSS (NM_015154) 4 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESDC2 BOCA|MESD mesoderm development candidate 2 protein-coding 29152 chr9 69976324 69976411 + 0 NA Intergenic L3|LINE|CR1 -67214 NR_125850 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 15460 chr2 44361810 44361953 + 0 NA promoter-TSS (NM_001171613) promoter-TSS (NM_001171613) -19 NM_001171617 9581 Hs.444349 NM_006036 ENSG00000138078 PREPL - prolyl endopeptidase-like protein-coding 15384 chr2 38462468 38462620 + 0 NA intron (NR_110259, intron 4 of 4) intron (NR_110259, intron 4 of 4) 53196 NR_110259 101929596 Hs.537341 NR_110259 LOC101929596 - uncharacterized LOC101929596 ncRNA 26738 chr7 102064013 102064066 + 0 NA intron (NM_181552, intron 3 of 23) intron (NM_181552, intron 3 of 23) -221023 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 29453 chr9 86948548 86948652 + 0 NA promoter-TSS (NR_049794) promoter-TSS (NR_049794) -98 NR_049794 100506834 Hs.553987 NR_049794 ENSG00000226237 GAS1RR LncRNA-Hh GAS1 adjacent regulatory RNA ncRNA 23680 chr5 168364212 168364305 + 0 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 72198 NM_001161662 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 16838 chr2 191041811 191041960 + 0 NA intron (NM_003151, intron 14 of 23) HAL1|LINE|L1 20359 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 23618 chr5 159100383 159100466 + 0 NA promoter-TSS (NM_001324101) promoter-TSS (NM_001324101) -59 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LOC101927740 - uncharacterized LOC101927740 ncRNA 25388 chr6 156564496 156564600 + 0 NA Intergenic Intergenic -213307 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 27925 chr8 61468875 61468979 + 0 NA intron (NM_173519, intron 5 of 5) intron (NM_173519, intron 5 of 5) 180961 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 CRALBPL|RLBP1L1 clavesin 1 protein-coding 4324 chr10 109223736 109223840 + 0 NA Intergenic L1PA2|LINE|L1 699458 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 13557 chr18 49656298 49656345 + 0 NA Intergenic Intergenic 94290 NM_001308006 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 29232 chr9 73119064 73119214 + 0 NA Intergenic Intergenic -32592 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 27134 chr7 142024600 142024704 + 0 NA intron (NM_004668, intron 7 of 47) intron (NM_004668, intron 7 of 47) 28773 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 17252 chr2 230691075 230691156 + 0 NA non-coding (NR_040038, exon 4 of 4) non-coding (NR_040038, exon 4 of 4) 9414 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 27316 chr8 1763119 1763223 + 0 NA promoter-TSS (NM_018941) promoter-TSS (NM_018941) 163 NR_134302 101927752 Hs.356690 NR_134302 ENSG00000253982 LOC101927752 - uncharacterized LOC101927752 ncRNA 1462 chr1 109050354 109050464 + 0 NA Intergenic Intergenic -8181 NM_001142551 22911 Hs.570055 NM_014969 ENSG00000085433 WDR47 - WD repeat domain 47 protein-coding 16134 chr2 111884132 111884276 + 0 NA promoter-TSS (NM_022662) promoter-TSS (NM_022662) -40 NM_022662 64682 Hs.436527 NM_022662 ENSG00000153107 ANAPC1 APC1|MCPR|TSG24 anaphase promoting complex subunit 1 protein-coding 18628 chr22 19144704 19144858 + 0 NA promoter-TSS (NM_022719) promoter-TSS (NM_022719) -104 NM_022719 8220 Hs.517407 NM_022719 ENSG00000100056 DGCR14 DGCR13|DGS-H|DGS-I|DGSH|DGSI|ES2|Es2el DiGeorge syndrome critical region gene 14 protein-coding 9329 chr14 72024205 72024309 + 0 NA intron (NM_001204416, intron 2 of 17) intron (NM_001204416, intron 2 of 17) 91219 NM_001204418 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G-protein signaling 6 protein-coding 21657 chr4 104967228 104967407 + 0 NA Intergenic Intergenic -178558 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 27311 chr8 764083 764187 + 0 NA intron (NM_001346810, intron 1 of 14) intron (NM_001346810, intron 1 of 14) 25587 NR_134292 401442 Hs.678992 NR_134292 ENSG00000282375 LOC401442 - uncharacterized LOC401442 ncRNA 12530 chr17 42833369 42833480 + 0 NA promoter-TSS (NM_001330229) promoter-TSS (NM_001330229) 27 NM_001330229 10197 Hs.152978 NM_005789 ENSG00000131467 PSME3 HEL-S-283|Ki|PA28-gamma|PA28G|PA28gamma|REG-GAMMA proteasome activator subunit 3 protein-coding 4752 chr11 6612253 6612404 + 0 NA promoter-TSS (NM_006284) promoter-TSS (NM_006284) -84 NM_006284 6881 Hs.5158 NM_006284 ENSG00000166337 TAF10 TAF2A|TAF2H|TAFII30 TATA-box binding protein associated factor 10 protein-coding 29671 chr9 98255771 98255922 + 0 NA promoter-TSS (NM_001267571) promoter-TSS (NM_001267571) -125 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 15756 chr2 70010364 70010444 + 0 NA intron (NR_033872, intron 7 of 10) L2c|LINE|L2 -48139 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 2694 chr1 216903542 216903646 + 0 NA intron (NM_001243507, intron 2 of 7) intron (NM_001243507, intron 2 of 7) 36079 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 22312 chr5 19735002 19735106 + 0 NA intron (NM_001291956, intron 6 of 14) intron (NM_001291956, intron 6 of 14) 151218 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 21861 chr4 145179660 145179764 + 0 NA promoter-TSS (NM_001102653) promoter-TSS (NM_001102653) -32 NM_001102653 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 16680 chr2 174121761 174121811 + 0 NA intron (NM_013341, intron 7 of 10) intron (NM_013341, intron 7 of 10) 96506 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 2657 chr1 213973229 213973333 + 0 NA intron (NR_037850, intron 1 of 5) intron (NR_037850, intron 1 of 5) 12872 NR_037850 100505832 Hs.664625 NR_037850 PROX1-AS1 - PROX1 antisense RNA 1 ncRNA 13477 chr18 44537699 44537833 + 0 NA intron (NR_131768, intron 1 of 4) intron (NR_131768, intron 1 of 4) 5987 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 22470 chr5 43483851 43483967 + 0 NA promoter-TSS (NM_022483) promoter-TSS (NM_022483) -19 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 28308 chr8 100722115 100722238 + 0 NA promoter-TSS (NM_002568) promoter-TSS (NM_002568) -89 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 19935 chr3 115341353 115341461 + 0 NA Intergenic Intergenic -194127 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 23412 chr5 143177394 143177498 + 0 NA intron (NM_015071, intron 20 of 22) intron (NM_015071, intron 20 of 22) -15054 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 12670 chr17 50391682 50391807 + 0 NA intron (NM_018509, intron 4 of 6) intron (NM_018509, intron 4 of 6) 5809 NM_018509 55379 Hs.370927 NM_018509 ENSG00000108829 LRRC59 PRO1855|p34 leucine rich repeat containing 59 protein-coding 13152 chr17 82037653 82037785 + 0 NA promoter-TSS (NM_001195218) promoter-TSS (NM_001195218) -22 NM_001195218 51181 Hs.9857 NM_016286 ENSG00000169738 DCXR DCR|HCR2|HCRII|KIDCR|P34H|PNTSU|SDR20C1|XR dicarbonyl and L-xylulose reductase protein-coding 890 chr1 53945676 53945780 + 0 NA promoter-TSS (NR_133632) promoter-TSS (NR_133632) 95 NR_133633 51668 Hs.525462 NM_016126 ENSG00000081870 HSPB11 C1orf41|HSPCO34|IFT25|PP25 heat shock protein family B (small) member 11 protein-coding 17334 chr2 236756939 236757043 + 0 NA Intergenic L1ME2z|LINE|L1 187254 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 27323 chr8 6313820 6313924 + 0 NA Intergenic Intergenic 92676 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 6891 chr12 42474500 42474604 + 0 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 9062 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 1282 chr1 90391317 90391421 + 0 NA Intergenic Intergenic 325868 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 30780 chrX 65706201 65706232 + 0 NA intron (NM_002444, intron 1 of 12) intron (NM_002444, intron 1 of 12) 38572 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 7321 chr12 79935056 79935204 + 0 NA promoter-TSS (NM_002480) promoter-TSS (NM_002480) 68 NM_002480 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 9828 chr15 32030260 32030364 + 0 NA promoter-TSS (NR_046324) promoter-TSS (NR_046324) -171 NM_000746 1139 Hs.511772 NM_000746 ENSG00000175344 CHRNA7 CHRNA7-2|NACHRA7 cholinergic receptor nicotinic alpha 7 subunit protein-coding 16222 chr2 120177292 120177453 + 0 NA 3' UTR (NM_001184937, exon 24 of 24) 3' UTR (NM_001184937, exon 24 of 24) 46036 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 28020 chr8 73294166 73294328 + 0 NA promoter-TSS (NM_000971) promoter-TSS (NM_000971) -355 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 6266 chr11 124739830 124739934 + 0 NA promoter-TSS (NM_006176) promoter-TSS (NM_006176) -51 NM_001126181 4900 Hs.524116 NM_006176 ENSG00000154146 NRGN RC3|hng neurogranin protein-coding 26342 chr7 66075751 66075909 + 0 NA promoter-TSS (NM_000048) promoter-TSS (NM_000048) -17 NM_001024944 435 Hs.632015 NM_000048 ENSG00000126522 ASL ASAL argininosuccinate lyase protein-coding 9732 chr14 103868653 103868825 + 0 NA Intergenic Intergenic 21018 NR_038436 145216 Hs.578091 NR_038436 ENSG00000258735 LINC00637 - long intergenic non-protein coding RNA 637 ncRNA 7069 chr12 53500790 53500964 + 0 NA promoter-TSS (NM_004178) promoter-TSS (NM_004178) -44 NM_004178 6895 Hs.326 NM_004178 ENSG00000139546 TARBP2 LOQS|TRBP|TRBP1|TRBP2 TARBP2, RISC loading complex RNA binding subunit protein-coding 22726 chr5 74063924 74064052 + 0 NA Intergenic L1ME2z|LINE|L1 244337 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 18294 chr20 56629173 56629326 + 0 NA promoter-TSS (NM_003222) promoter-TSS (NM_003222) -53 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 3183 chr10 2736591 2736695 + 0 NA Intergenic MER91A|DNA|hAT-Tip100 -235181 NR_136146 105376351 Hs.343482 NR_136146 LOC105376351 - uncharacterized LOC105376351 ncRNA 15342 chr2 36377175 36377288 + 0 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 21004 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 867 chr1 51637157 51637308 + 0 NA intron (NM_148906, intron 1 of 22) AluSq|SINE|Alu 20358 NM_148906 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 18125 chr20 47146914 47147018 + 0 NA intron (NM_005244, intron 10 of 15) L2a|LINE|L2 -20001 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 16055 chr2 102586234 102586359 + 0 NA Intergenic Intergenic -33238 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 14379 chr19 35740548 35740684 + 0 NA intron (NR_144338, intron 2 of 4) CpG-14298 1834 NR_144342 79713 Hs.352548 NM_024660 ENSG00000126246 IGFLR1 TMEM149 IGF like family receptor 1 protein-coding 22832 chr5 84696870 84696974 + 0 NA Intergenic L1M1|LINE|L1 -312055 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 3442 chr10 24491076 24491205 + 0 NA intron (NM_001282768, intron 6 of 17) intron (NM_001282768, intron 6 of 17) 24635 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 9759 chr14 105589490 105589594 + 0 NA Intergenic (CCAGC)n|Simple_repeat|Simple_repeat -31574 NR_107038 102465871 NR_107038 ENSG00000274172 MIR8071-1 hsa-mir-8071-1 microRNA 8071-1 ncRNA 15080 chr2 15939771 15939875 + 0 NA promoter-TSS (NM_001293228) promoter-TSS (NM_001293228) -615 NM_001293233 4613 Hs.25960 NM_005378 ENSG00000134323 MYCN MODED|N-myc|NMYC|ODED|bHLHe37 v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog protein-coding 15524 chr2 48440626 48440743 + 0 NA promoter-TSS (NM_001135629) promoter-TSS (NM_001135629) -85 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 28645 chr8 127743045 127743149 + 0 NA Intergenic Intergenic 7028 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc v-myc avian myelocytomatosis viral oncogene homolog protein-coding 28504 chr8 119086545 119086649 + 0 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -17815 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 229 chr1 16237196 16237332 + 0 NA promoter-TSS (NM_030907) promoter-TSS (NM_030907) -100 NM_030907 79363 Hs.546430 NM_030907 ENSG00000132881 RSG1 C1orf89 REM2 and RAB like small GTPase 1 protein-coding 24558 chr6 42292133 42292281 + 0 NA intron (NM_001297573, intron 4 of 17) intron (NM_001297573, intron 4 of 17) -74312 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 17375 chr2 239275212 239275327 + 0 NA intron (NM_006037, intron 2 of 26) CpG -30193 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 27903 chr8 59278190 59278263 + 0 NA Intergenic Intergenic -159018 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 315 chr1 21022397 21022509 + 0 NA intron (NM_001198803, intron 4 of 12) intron (NM_001198803, intron 4 of 12) -34021 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 17976 chr20 38110005 38110109 + 0 NA Intergenic Intergenic 55372 NM_004613 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 4842 chr11 12164313 12164317 + 0 NA TTS (NR_106739) TTS (NR_106739) 632 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 1827 chr1 155931495 155931599 + 0 NA intron (NM_014949, intron 2 of 13) intron (NM_014949, intron 2 of 13) 2895 NM_014949 22889 Hs.24656 NM_014949 ENSG00000132680 KIAA0907 BLOM7|SNORA80EHG KIAA0907 protein-coding 16049 chr2 102227781 102227932 + 0 NA intron (NM_003854, intron 9 of 11) intron (NM_003854, intron 9 of 11) 40883 NM_003854 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 26482 chr7 79528527 79528631 + 0 NA Intergenic LTR52|LTR|ERVL 74619 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 26058 chr7 36390313 36390475 + 0 NA promoter-TSS (NM_001100425) promoter-TSS (NM_001100425) -269 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 23791 chr5 177404470 177404620 + 0 NA exon (NM_000505, exon 8 of 14) exon (NM_000505, exon 8 of 14) -3909 NM_001029886 345456 Hs.130196 NM_001029886 ENSG00000196570 PFN3 - profilin 3 protein-coding 2501 chr1 206498813 206498917 + 0 NA Intergenic L2c|LINE|L2 -8665 NM_182664 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 18407 chr20 63865143 63865180 + 0 NA promoter-TSS (NM_199363) promoter-TSS (NM_199363) -67 NM_001243895 7165 Hs.473296 NM_003288 ENSG00000101150 TPD52L2 D54|TPD54 tumor protein D52 like 2 protein-coding 27681 chr8 37336679 37336787 + 0 NA Intergenic Intergenic 157180 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 20071 chr3 125520212 125520312 + 0 NA promoter-TSS (NM_003794) promoter-TSS (NM_003794) -48 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 21462 chr4 75725160 75725264 + 0 NA intron (NM_003715, intron 1 of 23) CpG 690 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 27838 chr8 53657871 53658025 + 0 NA Intergenic Intergenic 185094 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 11662 chr16 75566077 75566106 + 0 NA promoter-TSS (NM_007285) promoter-TSS (NM_007285) -260 NM_007285 11345 Hs.461379 NM_007285 ENSG00000034713 GABARAPL2 ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2 GABA type A receptor associated protein like 2 protein-coding 22193 chr5 8907256 8907376 + 0 NA Intergenic Intergenic 67584 NR_109932 101929284 Hs.403715 NR_109932 LOC101929284 - uncharacterized LOC101929284 ncRNA 18320 chr20 57709962 57710066 + 0 NA promoter-TSS (NM_020182) promoter-TSS (NM_020182) -39 NM_020182 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 17268 chr2 231514337 231514482 + 0 NA promoter-TSS (NR_024079) promoter-TSS (NR_024079) -70 NR_024079 151477 Hs.375211 NM_173513 ENSG00000181798 LINC00471 C2orf52 long intergenic non-protein coding RNA 471 ncRNA 26817 chr7 110557226 110557324 + 0 NA Intergenic Intergenic -533731 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 14211 chr19 16111633 16111799 + 0 NA promoter-TSS (NM_005370) promoter-TSS (NM_005370) 36 NM_005370 4218 Hs.642874 NM_005370 ENSG00000167461 RAB8A MEL|RAB8 RAB8A, member RAS oncogene family protein-coding 28763 chr8 140511951 140512092 + 0 NA promoter-TSS (NR_040712) promoter-TSS (NR_040712) 39 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 15839 chr2 74715212 74715355 + 0 NA Intergenic Intergenic 61055 NR_073398 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 6460 chr12 3300074 3300182 + 0 NA Intergenic Intergenic -81221 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 12253 chr17 28318937 28319095 + 0 NA promoter-TSS (NM_014573) promoter-TSS (NM_014573) -79 NM_014573 27346 Hs.199695 NM_014573 ENSG00000109084 TMEM97 MAC30 transmembrane protein 97 protein-coding 19291 chr3 29065580 29065707 + 0 NA Intergenic Intergenic 215296 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 22167 chr5 3311090 3311241 + 0 NA Intergenic Intergenic 133330 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 22922 chr5 96653069 96653266 + 0 NA Intergenic Intergenic -8870 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 5877 chr11 94603155 94603332 + 0 NA intron (NM_152431, intron 12 of 19) intron (NM_152431, intron 12 of 19) 35935 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 5314 chr11 59561305 59561385 + 0 NA Intergenic MER34A1|LTR|ERV1 33813 NR_036120 100422880 NR_036120 ENSG00000264559 MIR3162 mir-3162 microRNA 3162 ncRNA 3784 chr10 63707412 63707536 + 0 NA Intergenic Intergenic -185399 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 24766 chr6 70397472 70397677 + 0 NA intron (NR_125857, intron 3 of 3) intron (NR_125857, intron 3 of 3) 3372 NR_125857 101928353 NR_125857 EVADR - uncharacterized LOC101928353 ncRNA 1851 chr1 156456628 156456763 + 0 NA Intergenic Intergenic -27147 NM_001320453 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 31109 chrX 138897660 138897764 + 0 NA intron (NM_001139500, intron 2 of 6) intron (NM_001139500, intron 2 of 6) -30157 NM_001139502 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2 fibroblast growth factor 13 protein-coding 19461 chr3 48034153 48034188 + 0 NA intron (NM_030885, intron 1 of 3) intron (NM_030885, intron 1 of 3) 55109 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 20099 chr3 127962007 127962158 + 0 NA intron (NM_207335, intron 3 of 4) intron (NM_207335, intron 3 of 4) 39023 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 4542 chr10 122980360 122980399 + 0 NA 5' UTR (NM_153336, exon 1 of 7) 5' UTR (NM_153336, exon 1 of 7) 339 NM_153336 118672 Hs.281004 NM_153336 ENSG00000179988 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 27823 chr8 52820157 52820261 + 0 NA Intergenic Intergenic -105743 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 18042 chr20 43457560 43457596 + 0 NA promoter-TSS (NR_034009) promoter-TSS (NR_034009) -286 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 14141 chr19 12610795 12610935 + 0 NA promoter-TSS (NM_153358) promoter-TSS (NM_153358) -53 NM_153358 163049 Hs.720677 NM_153358 ENSG00000173875 ZNF791 - zinc finger protein 791 protein-coding 7618 chr12 108732149 108732319 + 0 NA promoter-TSS (NM_014325) promoter-TSS (NM_014325) -684 NM_014325 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 3386 chr10 21372977 21373123 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR 123591 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 9096 chr14 58298208 58298327 + 0 NA promoter-TSS (NR_029434) promoter-TSS (NR_029434) -130 NR_029435 379025 Hs.531089 NR_029434 ENSG00000257621 PSMA3-AS1 - PSMA3 antisense RNA 1 ncRNA 28064 chr8 79765299 79765403 + 0 NA exon (NM_001282851, exon 2 of 2) exon (NM_001282851, exon 2 of 2) 1124 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 17070 chr2 215530340 215530444 + 0 NA Intergenic Intergenic 76685 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 317 chr1 21176872 21177020 + 0 NA promoter-TSS (NM_001198801) promoter-TSS (NM_001198801) -58 NM_001198801 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 19905 chr3 113231910 113232014 + 0 NA intron (NM_001301861, intron 2 of 19) intron (NM_001301861, intron 2 of 19) 19465 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 18737 chr22 27512493 27512597 + 0 NA Intergenic Intergenic 201894 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LOC100507657 - uncharacterized LOC100507657 ncRNA 19723 chr3 98039664 98039764 + 0 NA Intergenic Intergenic -4410 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 9090 chr14 58104875 58104898 + 0 NA intron (NM_001001872, intron 4 of 7) intron (NM_001001872, intron 4 of 7) 47353 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 C14orf37 UT2|c14_5376 chromosome 14 open reading frame 37 protein-coding 27849 chr8 54101924 54102108 + 0 NA promoter-TSS (NM_001279360) promoter-TSS (NM_001279360) 1 NM_001279356 10434 Hs.744046 NM_006330 ENSG00000120992 LYPLA1 APT-1|APT1|LPL-I|LPL1|hAPT1 lysophospholipase I protein-coding 19193 chr3 14178674 14178797 + 0 NA promoter-TSS (NM_004628) promoter-TSS (NM_004628) 7 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 9700 chr14 102279961 102280065 + 0 NA intron (NM_001330234, intron 2 of 11) intron (NM_001330234, intron 2 of 11) 25187 NM_001272011 5891 Hs.104119 NM_014226 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 30358 chr9 136483002 136483054 + 0 NA promoter-TSS (NM_014866) promoter-TSS (NM_014866) 27 NM_014866 9919 Hs.522500 NM_014866 ENSG00000148396 SEC16A KIAA0310|SEC16L|p250 SEC16 homolog A, endoplasmic reticulum export factor protein-coding 4555 chr10 124153105 124153263 + 0 NA Intergenic Intergenic -59577 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 28265 chr8 97918489 97918659 + 0 NA intron (NM_002380, intron 2 of 18) intron (NM_002380, intron 2 of 18) 49553 NM_001317748 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 19766 chr3 100600496 100600636 + 0 NA Intergenic L1PB1|LINE|L1 -9023 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 3954 chr10 77949319 77949480 + 0 NA Intergenic Intergenic 22587 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 29188 chr9 71683957 71684061 + 0 NA 3' UTR (NM_001135820, exon 23 of 23) 3' UTR (NM_001135820, exon 23 of 23) 84875 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 10366 chr15 69997976 69998062 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 81449 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 15483 chr2 46172410 46172514 + 0 NA intron (NM_005400, intron 14 of 14) intron (NM_005400, intron 14 of 14) -124940 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 10271 chr15 64248054 64248173 + 0 NA intron (NM_022048, intron 4 of 11) intron (NM_022048, intron 4 of 11) -84958 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 5816 chr11 88175457 88175561 + 0 NA promoter-TSS (NR_036124) promoter-TSS (NR_036124) -42 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 24311 chr6 30091925 30092070 + 0 NA Intergenic Intergenic -13243 NR_126470 104533120 Hs.548919 NR_126470 ENSG00000231226 TRIM31-AS1 - TRIM31 antisense RNA 1 ncRNA 6784 chr12 27542747 27542851 + 0 NA intron (NM_003622, intron 1 of 29) intron (NM_003622, intron 1 of 29) 18687 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 10992 chr16 9846085 9846189 + 0 NA intron (NM_000833, intron 6 of 13) (AATCATG)n|Simple_repeat|Simple_repeat 335930 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 30077 chr9 123327786 123327960 + 0 NA Intergenic Intergenic -28294 NM_173689 286204 Hs.568340 NM_173689 ENSG00000148204 CRB2 FSGS9|VMCKD crumbs 2, cell polarity complex component protein-coding 1007 chr1 63662994 63663098 + 0 NA Intergenic Intergenic 39830 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 3896 chr10 73730458 73730549 + 0 NA promoter-TSS (NR_026592) promoter-TSS (NR_026592) 11 NR_026592 729096 Hs.709171 NR_026592 ENSG00000271816 BMS1P4 BMS1LP4 BMS1, ribosome biogenesis factor pseudogene 4 pseudo 18051 chr20 43782271 43782375 + 0 NA Intergenic MER41B|LTR|ERV1 -55321 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 4441 chr10 117653267 117653388 + 0 NA Intergenic Intergenic -108259 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 1186 chr1 84506552 84506603 + 0 NA promoter-TSS (NM_005274) promoter-TSS (NM_005274) 2 NM_005274 2787 Hs.645427 NM_005274 ENSG00000174021 GNG5 - G protein subunit gamma 5 protein-coding 8456 chr13 95676986 95677102 + 0 NA promoter-TSS (NR_132117) promoter-TSS (NR_132117) -95 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 29680 chr9 98848566 98848607 + 0 NA intron (NM_024642, intron 9 of 9) Tigger16a|DNA|TcMar-Tigger 40887 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 16723 chr2 177552733 177552782 + 0 NA promoter-TSS (NM_152517) promoter-TSS (NM_152517) 39 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 25924 chr7 27277697 27277812 + 0 NA Intergenic Intergenic -30525 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 12237 chr17 27247496 27247573 + 0 NA Intergenic Intergenic 46462 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 12194 chr17 19237708 19237744 + 0 NA intron (NM_001102664, intron 1 of 7) CpG 349 NM_001102664 22905 Hs.743983 NM_014964 ENSG00000072134 EPN2 EHB21 epsin 2 protein-coding 26333 chr7 64794264 64794430 + 0 NA promoter-TSS (NM_001160183) promoter-TSS (NM_001160183) -41 NR_073389 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 2573 chr1 209784581 209784736 + 0 NA promoter-TSS (NM_152485) promoter-TSS (NM_152485) 72 NM_152485 148304 Hs.497642 NM_152485 ENSG00000162757 C1orf74 URLC4 chromosome 1 open reading frame 74 protein-coding 11530 chr16 68529999 68530117 + 0 NA Intergenic CpG -9155 NM_001305207 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 14989 chr2 10283421 10283525 + 0 NA Intergenic Intergenic -19431 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 30295 chr9 132406828 132406932 + 0 NA promoter-TSS (NM_001205296) promoter-TSS (NM_001205296) -29 NM_001205296 7270 Hs.54780 NM_007344 ENSG00000125482 TTF1 TTF-1|TTF-I transcription termination factor 1 protein-coding 10110 chr15 52093869 52094029 + 0 NA Intergenic Intergenic 18826 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 3988 chr10 80453942 80453988 + 0 NA promoter-TSS (NM_001128309) promoter-TSS (NM_001128309) -317 NM_030927 81619 Hs.718943 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14 tetraspanin 14 protein-coding 28302 chr8 100487929 100488060 + 0 NA Intergenic Intergenic 71717 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 24067 chr6 13480923 13481027 + 0 NA intron (NM_001242629, intron 1 of 1) L2a|LINE|L2 5208 NM_001242628 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 6167 chr11 118692155 118692259 + 0 NA Intergenic Intergenic -12535 NM_007180 11181 Hs.129712 NM_007180 ENSG00000118094 TREH TRE|TREA trehalase protein-coding 24861 chr6 83431144 83431254 + 0 NA promoter-TSS (NM_002395) promoter-TSS (NM_002395) 20 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 13998 chr19 6279991 6280138 + 0 NA promoter-TSS (NM_005934) promoter-TSS (NM_005934) -116 NM_005934 4298 Hs.10095 NM_005934 ENSG00000130382 MLLT1 ENL|LTG19|YEATS1 MLLT1, super elongation complex subunit protein-coding 16831 chr2 190837556 190837660 + 0 NA Intergenic Intergenic -43213 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 4239 chr10 101694236 101694337 + 0 NA intron (NM_001323541, intron 1 of 8) CpG 700 NR_136613 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 17890 chr20 34083281 34083359 + 0 NA TTS (NM_016732) TTS (NM_016732) 29036 NM_003908 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 24562 chr6 42326441 42326581 + 0 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) -108616 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 908 chr1 54615701 54615855 + 0 NA intron (NM_176782, intron 3 of 7) intron (NM_176782, intron 3 of 7) 7749 NM_176782 338094 Hs.234786 NM_176782 ENSG00000162391 FAM151A C1orf179 family with sequence similarity 151 member A protein-coding 28353 chr8 102757912 102758016 + 0 NA Intergenic Intergenic -102062 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 10418 chr15 72375940 72376088 + 0 NA promoter-TSS (NR_027262) promoter-TSS (NR_027262) -99 NR_027262 80072 Hs.591113 NM_025005 ENSG00000260339 HEXA-AS1 C15orf34 HEXA antisense RNA 1 ncRNA 25122 chr6 126182911 126182936 + 0 NA Intergenic Intergenic -156866 NM_001012507 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 3870 chr10 72298031 72298202 + 0 NA Intergenic CpG 24197 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 3927 chr10 75262850 75262928 + 0 NA Intergenic Intergenic -26877 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 9899 chr15 39128374 39128478 + 0 NA Intergenic Intergenic -122243 NR_144507 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 5504 chr11 65989093 65989178 + 0 NA Intergenic Intergenic -12944 NM_003860 8815 Hs.433759 NM_003860 ENSG00000175334 BANF1 BAF|BCRP1|D14S1460|NGPS barrier to autointegration factor 1 protein-coding 808 chr1 45802893 45802997 + 0 NA promoter-TSS (NM_001324320) promoter-TSS (NM_001324320) -662 NM_001324320 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 845 chr1 47726357 47726461 + 0 NA Intergenic Intergenic 270481 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 24444 chr6 35297832 35297836 + 0 NA promoter-TSS (NM_022047) promoter-TSS (NM_022047) 16 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6, guanine nucleotide exchange factor protein-coding 14629 chr19 47719168 47719272 + 0 NA intron (NM_014601, intron 3 of 5) intron (NM_014601, intron 3 of 5) 5876 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 5997 chr11 105092653 105092742 + 0 NA intron (NM_001007232, intron 3 of 3) intron (NM_001007232, intron 3 of 3) 8734 NM_001007232 440068 Hs.732627 NM_001007232 ENSG00000255221 CARD17 INCA caspase recruitment domain family member 17 protein-coding 29336 chr9 79026454 79026543 + 0 NA Intergenic L2|LINE|L2 119168 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 27721 chr8 40054833 40054985 + 0 NA Intergenic Intergenic -98559 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 28172 chr8 90000854 90000986 + 0 NA promoter-TSS (NM_001330575) promoter-TSS (NM_001330575) -432 NM_001330575 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 23688 chr5 169350865 169350983 + 0 NA Intergenic Intergenic -49795 NM_003062 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 11995 chr17 5776334 5776438 + 0 NA intron (NR_040000, intron 1 of 3) intron (NR_040000, intron 1 of 3) 4152 NR_040000 339166 Hs.736088 NR_040000 ENSG00000179314 LOC339166 - uncharacterized LOC339166 ncRNA 17498 chr20 4018416 4018520 + 0 NA Intergenic Intergenic -2877 NM_001321749 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 4952 chr11 18013105 18013209 + 0 NA promoter-TSS (NM_012139) promoter-TSS (NM_012139) 5 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 22310 chr5 19322844 19322971 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 563365 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 3227 chr10 5565984 5566088 + 0 NA Intergenic Intergenic 30082 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 12548 chr17 43778366 43778485 + 0 NA intron (NM_004090, intron 1 of 2) CpG 575 NM_004090 1845 Hs.181046 NM_004090 ENSG00000108861 DUSP3 VHR dual specificity phosphatase 3 protein-coding 5913 chr11 95977675 95977779 + 0 NA 3' UTR (NM_032427, exon 5 of 5) 3' UTR (NM_032427, exon 5 of 5) -53520 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 29519 chr9 90992879 90992983 + 0 NA Intergenic MER20B|DNA|hAT-Charlie 82201 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 20738 chr3 179322913 179322943 + 0 NA promoter-TSS (NM_001303425) promoter-TSS (NM_001303425) -63 NM_001303426 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 19881 chr3 112075106 112075256 + 0 NA intron (NR_026734, intron 13 of 16) intron (NR_026734, intron 13 of 16) -11154 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 4188 chr10 98446886 98446990 + 0 NA promoter-TSS (NM_001322477) promoter-TSS (NM_001322477) 25 NM_001322476 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 17113 chr2 219160274 219160378 + 0 NA intron (NM_024782, intron 1 of 7) CpG 539 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 22342 chr5 32585952 32586147 + 0 NA intron (NM_006713, intron 1 of 4) CpG 550 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 homolog, transcriptional regulator protein-coding 19834 chr3 108222393 108222526 + 0 NA 5' UTR (NM_018010, exon 1 of 11) 5' UTR (NM_018010, exon 1 of 11) 111 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2 intraflagellar transport 57 protein-coding 5438 chr11 64342591 64342741 + 0 NA promoter-TSS (NR_106977) promoter-TSS (NR_106977) -762 NR_106977 102466815 NR_106977 ENSG00000278359 MIR7155 hsa-mir-7155 microRNA 7155 ncRNA 5617 chr11 71607479 71607609 + 0 NA Intergenic CpG -24669 NM_001005405 440051 Hs.679617 NM_001005405 ENSG00000204571 KRTAP5-11 KRTAP5-5|KRTAP5-6|KRTAP5.11 keratin associated protein 5-11 protein-coding 6105 chr11 113447041 113447174 + 0 NA intron (NM_016574, intron 1 of 6) intron (NM_016574, intron 1 of 6) 2981 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 8876 chr14 35826715 35826802 + 0 NA intron (NM_032352, intron 1 of 9) CpG 367 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 breast cancer metastasis-suppressor 1-like protein-coding 30179 chr9 128307326 128307473 + 0 NA Intergenic AluJo|SINE|Alu 14819 NM_001329862 26995 Hs.632685 NM_015679 ENSG00000167112 TRUB2 CLONE24922 TruB pseudouridine synthase family member 2 protein-coding 27791 chr8 48788851 48788955 + 0 NA Intergenic Intergenic -53592 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 7913 chr12 132561000 132561154 + 0 NA intron (NM_001142641, intron 5 of 16) intron (NM_001142641, intron 5 of 16) -20920 NR_106821 102465975 NR_106821 ENSG00000277052 MIR6763 hsa-mir-6763 microRNA 6763 ncRNA 27558 chr8 24955184 24955288 + 0 NA intron (NM_006158, intron 1 of 3) intron (NM_006158, intron 1 of 3) -1369 NR_106900 102465506 NR_106900 ENSG00000283327 MIR6841 hsa-mir-6841 microRNA 6841 ncRNA 24383 chr6 31834567 31834671 + 0 NA promoter-TSS (NM_001287487) promoter-TSS (NM_001287487) -296 NM_001287484 50854 Hs.640836 NM_016947 ENSG00000204387 C6orf48 D6S57|G8 chromosome 6 open reading frame 48 protein-coding 1613 chr1 119783038 119783154 + 0 NA Intergenic Intergenic -14164 NM_001166107 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 9709 chr14 102592359 102592396 + 0 NA promoter-TSS (NM_015156) promoter-TSS (NM_015156) -282 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 9580 chr14 93115275 93115401 + 0 NA intron (NM_001142594, intron 1 of 10) CpG-7569 581 NM_001142593 3705 Hs.308122 NM_014216 ENSG00000100605 ITPK1 ITRPK1 inositol-tetrakisphosphate 1-kinase protein-coding 18725 chr22 26568322 26568454 + 0 NA intron (NM_003595, intron 1 of 6) MER41B|LTR|ERV1 -2984 NM_001008566 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B tyrosylprotein sulfotransferase 2 protein-coding 6675 chr12 14951204 14951308 + 0 NA promoter-TSS (NM_001321423) promoter-TSS (NM_001321423) -105 NM_001321422 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 5064 chr11 28673808 28673912 + 0 NA Intergenic Intergenic -196312 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 14866 chr19 58305159 58305302 + 0 NA promoter-TSS (NR_144445) promoter-TSS (NR_144445) -144 NR_144445 105372481 Hs.435404 NR_144445 ENSG00000142396 ERVK3-1 - endogenous retrovirus group K3 member 1 ncRNA 1406 chr1 100266136 100266240 + 0 NA promoter-TSS (NM_001130841) promoter-TSS (NM_001130841) -14 NR_110434 100506007 Hs.192268 NR_110434 RTCA-AS1 - RTCA antisense RNA 1 ncRNA 26759 chr7 104207920 104208050 + 0 NA promoter-TSS (NM_181747) promoter-TSS (NM_181747) 62 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 11938 chr17 3558692 3558796 + 0 NA promoter-TSS (NM_001258205) promoter-TSS (NM_001258205) -749 NM_001258205 162514 Hs.446255 NM_145068 ENSG00000167723 TRPV3 FNEPPK2|OLMS|VRL3 transient receptor potential cation channel subfamily V member 3 protein-coding 5092 chr11 32091436 32091583 + 0 NA intron (NM_002901, intron 1 of 5) CpG 578 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 9552 chr14 90828188 90828310 + 0 NA Intergenic Intergenic -11832 NM_001320421 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 26382 chr7 70738193 70738297 + 0 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -394292 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13073 chr17 78360158 78360262 + 0 NA promoter-TSS (NR_110845) promoter-TSS (NR_110845) -131 NM_003955 9021 Hs.527973 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 28978 chr9 21454159 21454263 + 0 NA TTS (NR_027054) TTS (NR_027054) 13757 NM_024013 3439 Hs.37026 NM_024013 ENSG00000197919 IFNA1 IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@ interferon alpha 1 protein-coding 10140 chr15 55498350 55498454 + 0 NA non-coding (NR_037923, exon 1 of 16) non-coding (NR_037923, exon 1 of 16) 182 NR_037923 100533483 Hs.285051 NR_037923 ENSG00000261771 DYX1C1-CCPG1 - DYX1C1-CCPG1 readthrough (NMD candidate) ncRNA 30583 chrX 24693671 24693810 + 0 NA promoter-TSS (NM_016937) promoter-TSS (NM_016937) -93 NM_001330360 5422 Hs.567319 NM_016937 ENSG00000101868 POLA1 NSX|POLA|p180 DNA polymerase alpha 1, catalytic subunit protein-coding 24216 chr6 26103915 26104029 + 0 NA promoter-TSS (NM_003542) promoter-TSS (NM_003542) 24 NM_003542 8364 Hs.46423 NM_003542 ENSG00000197061 HIST1H4C H4/g|H4FG|dJ221C16.1 histone cluster 1 H4 family member c protein-coding 13113 chr17 81037522 81037626 + 0 NA intron (NM_006340, intron 1 of 14) intron (NM_006340, intron 1 of 14) 2427 NM_006340 10458 Hs.128316 NM_006340 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1 associated protein 2 protein-coding 10384 chr15 70781399 70781457 + 0 NA Intergenic Intergenic -17917 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 11211 chr16 30091901 30092013 + 0 NA promoter-TSS (NM_004608) promoter-TSS (NM_004608) -73 NM_004608 6911 Hs.198301 NM_004608 ENSG00000149922 TBX6 SCDO5 T-box 6 protein-coding 11566 chr16 69726488 69726671 + 0 NA promoter-TSS (NM_000903) promoter-TSS (NM_000903) 51 NM_001025434 1728 Hs.406515 NM_000903 ENSG00000181019 NQO1 DHQU|DIA4|DTD|NMOR1|NMORI|QR1 NAD(P)H quinone dehydrogenase 1 protein-coding 6597 chr12 10673988 10674116 + 0 NA 5' UTR (NM_018423, exon 1 of 11) 5' UTR (NM_018423, exon 1 of 11) 240 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 2472 chr1 204916203 204916357 + 0 NA intron (NM_001160332, intron 1 of 27) intron (NM_001160332, intron 1 of 27) -27946 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NF|NRCAML neurofascin protein-coding 30502 chrX 13487415 13487519 + 0 NA Intergenic Intergenic -82108 NM_001167890 25975 Hs.12844 NM_015507 ENSG00000198759 EGFL6 MAEG|W80 EGF like domain multiple 6 protein-coding 9466 chr14 81164318 81164422 + 0 NA Intergenic Intergenic 38464 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 13452 chr18 36505141 36505245 + 0 NA intron (NM_025135, intron 4 of 24) Tigger4|DNA|TcMar-Tigger 158225 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 6886 chr12 42144809 42144935 + 0 NA promoter-TSS (NM_001099650) promoter-TSS (NM_001099650) -1 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 8466 chr13 97222200 97222359 + 0 NA promoter-TSS (NM_001306070) promoter-TSS (NM_001306070) -10 NM_001306070 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 21412 chr4 67701182 67701355 + 0 NA promoter-TSS (NM_018227) promoter-TSS (NM_018227) -10 NR_015439 550112 Hs.479879 NR_015439 ENSG00000248049 UBA6-AS1 - UBA6 antisense RNA 1 (head to head) ncRNA 6013 chr11 107385720 107385824 + 0 NA intron (NM_152434, intron 12 of 17) MER44B|DNA|TcMar-Tigger 72074 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19-like 2, cell cycle control (S. pombe) protein-coding 1721 chr1 151763465 151763555 + 0 NA promoter-TSS (NM_001301371) promoter-TSS (NM_001301371) 30 NM_001301371 51686 Hs.713789 NM_016178 ENSG00000143450 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 25983 chr7 31263483 31263637 + 0 NA Intergenic L1ME3A|LINE|L1 77364 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 21827 chr4 139301318 139301488 + 0 NA promoter-TSS (NM_001184986) promoter-TSS (NM_001184986) -119 NM_057175 80155 Hs.745047 NM_057175 ENSG00000164134 NAA15 Ga19|NARG1|NAT1P|NATH|TBDN|TBDN100 N(alpha)-acetyltransferase 15, NatA auxiliary subunit protein-coding 3376 chr10 21194618 21194722 + 0 NA Intergenic Intergenic 20368 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 9048 chr14 55077270 55077374 + 0 NA Intergenic Intergenic 25678 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 11520 chr16 68091694 68091885 + 0 NA intron (NM_004555, intron 1 of 10) intron (NM_004555, intron 1 of 10) 6423 NM_004555 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NFAT4|NFATX nuclear factor of activated T-cells 3 protein-coding 20773 chr3 182365253 182365372 + 0 NA Intergenic Intergenic 121050 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 11467 chr16 66131274 66131378 + 0 NA Intergenic Intergenic -235281 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 1431 chr1 106678827 106678931 + 0 NA Intergenic MIRc|SINE|MIR -377766 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 29852 chr9 110351050 110351227 + 0 NA Intergenic Intergenic -13254 NM_001003936 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 7997 chr13 25901728 25901860 + 0 NA intron (NM_001313741, intron 32 of 35) intron (NM_001313741, intron 32 of 35) 149266 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 1489 chr1 110210130 110210267 + 0 NA promoter-TSS (NR_046546) promoter-TSS (NR_046546) -211 NR_046546 100873974 Hs.130515 NR_046546 KCNC4-AS1 - KCNC4 antisense RNA 1 (head to head) ncRNA 1805 chr1 155135130 155135262 + 0 NA promoter-TSS (NM_001287590) promoter-TSS (NM_001287590) -148 NM_001287591 55974 Hs.292154 NM_018845 ENSG00000169241 SLC50A1 HsSWEET1|RAG1AP1|SCP|SWEET1|slv solute carrier family 50 member 1 protein-coding 3226 chr10 5564241 5564345 + 0 NA Intergenic L2|LINE|L2 31825 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LOC105376382 - uncharacterized LOC105376382 ncRNA 20995 chr3 193461789 193461947 + 0 NA intron (NM_032279, intron 13 of 29) intron (NM_032279, intron 13 of 29) -83143 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 19055 chr22 50327009 50327113 + 0 NA promoter-TSS (NM_001001794) promoter-TSS (NM_001001794) -1 NM_001001794 414918 Hs.530380 NM_001001794 ENSG00000205593 DENND6B AFI1B|FAM116B DENN domain containing 6B protein-coding 2922 chr1 230084633 230084814 + 0 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 17528 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 6808 chr12 28584146 28584250 + 0 NA Intergenic Intergenic 393771 NM_001330367 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 14222 chr19 16628210 16628345 + 0 NA promoter-TSS (NM_004831) promoter-TSS (NM_004831) -73 NM_004831 9441 Hs.715040 NM_004831 ENSG00000105085 MED26 CRSP7|CRSP70 mediator complex subunit 26 protein-coding 29657 chr9 98034851 98034925 + 0 NA Intergenic Intergenic -21789 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 9145 chr14 61322888 61322962 + 0 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 1482 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 14570 chr19 45584855 45585007 + 0 NA promoter-TSS (NM_025136) promoter-TSS (NM_025136) -67 NM_025136 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 OPA3, outer mitochondrial membrane lipid metabolism regulator protein-coding 20474 chr3 156483471 156483575 + 0 NA intron (NM_003471, intron 8 of 13) LTR102_Mam|LTR|ERVL -36587 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 6094 chr11 112321984 112322088 + 0 NA intron (NR_126004, intron 2 of 3) intron (NR_126004, intron 2 of 3) 51287 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LOC283140 - uncharacterized LOC283140 ncRNA 27724 chr8 40119082 40119236 + 0 NA Intergenic Intergenic -34309 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 4967 chr11 18958652 18958792 + 0 NA Intergenic Intergenic -23720 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 15265 chr2 28584025 28584116 + 0 NA intron (NR_138141, intron 5 of 35) intron (NR_138141, intron 5 of 35) 17713 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 27383 chr8 10730527 10730618 + 0 NA promoter-TSS (NM_031439) promoter-TSS (NM_031439) 2 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box 7 protein-coding 27497 chr8 22010269 22010400 + 0 NA Intergenic CpG -13776 NM_001286680 10361 Hs.131055 NM_182795 ENSG00000158806 NPM2 - nucleophosmin/nucleoplasmin 2 protein-coding 18566 chr21 42724369 42724473 + 0 NA intron (NM_001001579, intron 3 of 16) intron (NM_001001579, intron 3 of 16) 55573 NR_135517 101928311 Hs.570404 NR_135517 ENSG00000283051 LINC01668 - long intergenic non-protein coding RNA 1668 ncRNA 27617 chr8 28494062 28494189 + 0 NA promoter-TSS (NM_017412) promoter-TSS (NM_017412) -80 NM_145866 7976 Hs.40735 NM_017412 ENSG00000104290 FZD3 Fz-3 frizzled class receptor 3 protein-coding 15586 chr2 56183726 56183756 + 0 NA promoter-TSS (NM_001080433) promoter-TSS (NM_001080433) -382 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 210 chr1 15526713 15526863 + 0 NA promoter-TSS (NR_109898) promoter-TSS (NR_109898) -25 NM_001287811 23341 Hs.655410 NM_015291 ENSG00000116138 DNAJC16 - DnaJ heat shock protein family (Hsp40) member C16 protein-coding 21589 chr4 92234450 92234519 + 0 NA Intergenic L1ME5|LINE|L1 42818 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 25168 chr6 133569646 133569750 + 0 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -251449 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 20325 chr3 143119727 143119831 + 0 NA promoter-TSS (NM_004267) promoter-TSS (NM_004267) 3 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 12641 chr17 49508624 49508728 + 0 NA intron (NM_002507, intron 3 of 5) intron (NM_002507, intron 3 of 5) -2141 NR_106751 102465141 NR_106751 ENSG00000277478 MIR6165 hsa-mir-6165 microRNA 6165 ncRNA 6722 chr12 20492339 20492443 + 0 NA intron (NM_000921, intron 1 of 15) MIR|SINE|MIR -79473 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 5381 chr11 62709533 62709637 + 0 NA promoter-TSS (NR_037949) promoter-TSS (NR_037949) 34 NR_037948 26580 Hs.533709 NM_032667 ENSG00000168000 BSCL2 GNG3LG|HMN5|PELD|SPG17 BSCL2, seipin lipid droplet biogenesis associated protein-coding 20588 chr3 168047296 168047420 + 0 NA intron (NM_014498, intron 2 of 15) intron (NM_014498, intron 2 of 15) 48567 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 27348 chr8 8296406 8296476 + 0 NA Intergenic Intergenic 67871 NR_024363 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 22018 chr4 173191850 173192000 + 0 NA intron (NM_017423, intron 1 of 11) L2c|LINE|L2 -22273 NR_134241 101930370 Hs.563191 NR_134241 ENSG00000245213 LOC101930370 - uncharacterized LOC101930370 ncRNA 17389 chr2 240450300 240450373 + 0 NA non-coding (NR_024014, exon 2 of 2) non-coding (NR_024014, exon 2 of 2) -5665 NR_029702 406941 NR_029702 ENSG00000207611 MIR149 MIRN149|mir-149 microRNA 149 ncRNA 9587 chr14 93683308 93683412 + 0 NA intron (NM_020818, intron 43 of 49).2 MLT1J2|LTR|ERVL-MaLR 105060 NM_178013 145270 Hs.432401 NM_178004 ENSG00000175785 PRIMA1 PRIMA proline rich membrane anchor 1 protein-coding 30777 chrX 65645032 65645136 + 0 NA Intergenic Intergenic -22560 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 30953 chrX 108299314 108299418 + 0 NA intron (NM_033641, intron 3 of 44) intron (NM_033641, intron 3 of 44) 139064 NM_001287760 1288 Hs.145586 NM_001847 ENSG00000197565 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen type IV alpha 6 chain protein-coding 9785 chr15 22786384 22786488 + 0 NA promoter-TSS (NM_144599) promoter-TSS (NM_144599) -196 NM_144599 123606 Hs.511797 NM_144599 ENSG00000170113 NIPA1 FSP3|SPG6 non imprinted in Prader-Willi/Angelman syndrome 1 protein-coding 16158 chr2 112764727 112764751 + 0 NA promoter-TSS (NM_001304361) promoter-TSS (NM_001304361) -62 NM_152515 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 21797 chr4 128809667 128809806 + 0 NA promoter-TSS (NM_001287439) promoter-TSS (NM_001287439) 113 NM_024900 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 2702 chr1 218025613 218025664 + 0 NA Intergenic Intergenic -17867 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 28099 chr8 81281381 81281534 + 0 NA intron (NM_001444, intron 1 of 3) intron (NM_001444, intron 1 of 3) 974 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 12277 chr17 28896965 28897096 + 0 NA TTS (NM_144683) TTS (NM_144683) 667 NM_004475 2319 Hs.514038 NM_004475 ENSG00000132589 FLOT2 ECS-1|ECS1|ESA|ESA1|M17S1 flotillin 2 protein-coding 22677 chr5 68950282 68950386 + 0 NA Intergenic Intergenic 79593 NR_130778 101928885 Hs.630474 NR_130778 LOC101928885 - uncharacterized LOC101928885 ncRNA 22515 chr5 53019374 53019542 + 0 NA intron (NR_073107, intron 1 of 28) MER44B|DNA|TcMar-Tigger 30132 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 3196 chr10 3785377 3785589 + 0 NA promoter-TSS (NM_001300) promoter-TSS (NM_001300) -202 NM_001160124 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 11982 chr17 4997499 4997640 + 0 NA promoter-TSS (NM_001167985) promoter-TSS (NM_001167985) 41 NM_213726 388324 Hs.658926 NM_213726 ENSG00000196388 INCA1 HSD45 inhibitor of CDK, cyclin A1 interacting protein 1 protein-coding 22439 chr5 40755139 40755243 + 0 NA intron (NM_012382, intron 1 of 4) intron (NM_012382, intron 1 of 4) 779 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 7046 chr12 52927466 52927570 + 0 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) -1049 NM_001256282 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 5074 chr11 29527721 29527825 + 0 NA Intergenic LTR4|LTR|ERV1 454620 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 1895 chr1 159798997 159799101 + 0 NA Intergenic Intergenic -1462 NM_001284217 343413 Hs.196955 NM_001004310 ENSG00000181036 FCRL6 FcRH6 Fc receptor like 6 protein-coding 21079 chr3 197539952 197540056 + 0 NA intron (NM_203315, intron 2 of 6) intron (NM_203315, intron 2 of 6) 15983 NM_004051 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 20275 chr3 140863794 140863898 + 0 NA Intergenic Intergenic -77974 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 4465 chr10 119080836 119080882 + 0 NA promoter-TSS (NM_003750) promoter-TSS (NM_003750) -37 NM_003750 8661 Hs.523299 NM_003750 ENSG00000107581 EIF3A EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185 eukaryotic translation initiation factor 3 subunit A protein-coding 9213 chr14 64914285 64914463 + 0 NA promoter-TSS (NM_001204063) promoter-TSS (NM_001204063) 13 NM_001202558 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB - CHURC1-FNTB readthrough protein-coding 13129 chr17 81394013 81394072 + 0 NA Intergenic CpG -5679 NM_001291324 57597 Hs.514580 NM_024696 ENSG00000266074 BAHCC1 BAHD2 BAH domain and coiled-coil containing 1 protein-coding 4283 chr10 103757867 103757971 + 0 NA intron (NM_014631, intron 3 of 13) intron (NM_014631, intron 3 of 13) 11140 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 3799 chr10 67885034 67885129 + 0 NA promoter-TSS (NM_001142498) promoter-TSS (NM_001142498) -100 NM_001142498 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 9892 chr15 38454079 38454222 + 0 NA promoter-TSS (NM_173611) promoter-TSS (NM_173611) 23 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 18112 chr20 46089614 46089718 + 0 NA intron (NM_020967, intron 1 of 7) CpG 275 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 23839 chr5 180494242 180494379 + 0 NA promoter-TSS (NM_001303241) promoter-TSS (NM_001303241) -89 NM_001303241 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 2048 chr1 169367787 169367904 + 0 NA promoter-TSS (NM_001320973) promoter-TSS (NM_001320973) -34 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 30016 chr9 120655129 120655281 + 0 NA intron (NM_001080497, intron 2 of 5) Tigger3b|DNA|TcMar-Tigger 59282 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 9632 chr14 96797207 96797365 + 0 NA promoter-TSS (NM_003384) promoter-TSS (NM_003384) -61 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A vaccinia related kinase 1 protein-coding 11134 chr16 23182474 23182595 + 0 NA promoter-TSS (NM_001039) promoter-TSS (NM_001039) -185 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 25663 chr7 7719362 7719499 + 0 NA promoter-TSS (NM_002947) promoter-TSS (NM_002947) -823 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 23674 chr5 168291470 168291595 + 0 NA promoter-TSS (NM_001161661) promoter-TSS (NM_001161661) -528 NM_001161661 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 21010 chr3 194135053 194135171 + 0 NA Intergenic CpG -1030 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 5717 chr11 78715690 78715784 + 0 NA intron (NM_001098816, intron 25 of 33) MIRc|SINE|MIR -140873 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 26034 chr7 34748434 34748631 + 0 NA intron (NR_015356, intron 2 of 4) MIR1_Amn|SINE|MIR 9740 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 22054 chr4 177728398 177728502 + 0 NA promoter-TSS (NR_028342) promoter-TSS (NR_028342) -307 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 20002 chr3 120348847 120348956 + 0 NA exon (NM_001099678, exon 1 of 4) exon (NM_001099678, exon 1 of 4) 438 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 3742 chr10 60778312 60778442 + 0 NA promoter-TSS (NM_001170407) promoter-TSS (NM_001170407) 46 NM_001320918 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 8240 chr13 48001271 48001457 + 0 NA promoter-TSS (NM_003850) promoter-TSS (NM_003850) -38 NM_003850 8803 Hs.743361 NM_003850 ENSG00000136143 SUCLA2 A-BETA|A-SCS|MTDPS5|SCS-betaA succinate-CoA ligase ADP-forming beta subunit protein-coding 13083 chr17 78923782 78923928 + 0 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 1535 NM_003255 7077 Hs.633514 NM_003255 ENSG00000035862 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 25629 chr7 6404069 6404175 + 0 NA TTS (NM_018890) TTS (NM_018890) 29627 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|Rac-1|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding 17598 chr20 10923151 10923255 + 0 NA Intergenic Intergenic -13931 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 7736 chr12 119877322 119877474 + 0 NA promoter-TSS (NM_007174) promoter-TSS (NM_007174) -107 NM_001206999 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 3174 chr10 1049310 1049337 + 0 NA promoter-TSS (NM_001317956) promoter-TSS (NM_001317956) 43 NM_004508 3422 Hs.283652 NM_004508 ENSG00000067064 IDI1 IPP1|IPPI1 isopentenyl-diphosphate delta isomerase 1 protein-coding 13356 chr18 26617321 26617425 + 0 NA intron (NM_001258222, intron 1 of 4) intron (NM_001258222, intron 1 of 4) 22971 NM_198991 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 25830 chr7 22103774 22103858 + 0 NA Intergenic Intergenic -157892 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 17159 chr2 222860070 222860147 + 0 NA promoter-TSS (NM_004457) promoter-TSS (NM_004457) -906 NM_004457 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|PRO2194 acyl-CoA synthetase long-chain family member 3 protein-coding 1863 chr1 156767220 156767258 + 0 NA promoter-TSS (NM_005973) promoter-TSS (NM_005973) -243 NM_005973 5546 Hs.516948 NM_005973 ENSG00000143294 PRCC RCCP1|TPRC papillary renal cell carcinoma (translocation-associated) protein-coding 4495 chr10 120504405 120504442 + 0 NA intron (NM_001318169, intron 2 of 2) LTR10E|LTR|ERV1 47469 NM_001318169 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 9227 chr14 65258576 65258652 + 0 NA Intergenic LTR26|LTR|ERV1 -36267 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 26302 chr7 55018881 55018985 + 0 NA promoter-TSS (NM_201283) promoter-TSS (NM_201283) -88 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 15658 chr2 64360142 64360269 + 0 NA Intergenic Intergenic -19357 NR_106995 102465833 NR_106995 ENSG00000264297 MIR4433B hsa-mir-4433b microRNA 4433b ncRNA 29528 chr9 91313077 91313181 + 0 NA intron (NM_001306190, intron 3 of 8) LTR54B|LTR|ERV1 48795 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 28571 chr8 123517102 123517206 + 0 NA intron (NM_058229, intron 4 of 8) intron (NM_058229, intron 4 of 8) 14989 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 19016 chr22 45934815 45934959 + 0 NA intron (NM_058238, intron 2 of 3) intron (NM_058238, intron 2 of 3) 42241 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 5852 chr11 93197830 93197980 + 0 NA promoter-TSS (NM_001286139) promoter-TSS (NM_001286139) 70 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 4672 chr11 747310 747407 + 0 NA promoter-TSS (NM_006755) promoter-TSS (NM_006755) -74 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 14577 chr19 45722072 45722176 + 0 NA intron (NM_001329633, intron 1 of 1) intron (NM_001329633, intron 1 of 1) 1372 NM_001329634 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 23264 chr5 135127893 135127997 + 0 NA intron (NM_001277348, intron 2 of 5) intron (NM_001277348, intron 2 of 5) -87898 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 CTC-276P9.1|Epist C5orf66 antisense RNA 1 ncRNA 4541 chr10 122954177 122954329 + 0 NA 5' UTR (NM_024942, exon 1 of 6) 5' UTR (NM_024942, exon 1 of 6) 150 NM_024942 80007 Hs.501286 NM_024942 ENSG00000119965 C10orf88 - chromosome 10 open reading frame 88 protein-coding 12177 chr17 17991032 17991263 + 0 NA intron (NM_031294, intron 5 of 13) L2a|LINE|L2 18334 NM_001130092 83450 Hs.579264 NM_031294 ENSG00000171962 DRC3 CFAP134|LRRC48 dynein regulatory complex subunit 3 protein-coding 14229 chr19 17075476 17075645 + 0 NA promoter-TSS (NM_004145) promoter-TSS (NM_004145) -27 NM_033417 93323 Hs.404088 NM_033417 ENSG00000131351 HAUS8 DGT4|HICE1|NY-SAR-48 HAUS augmin like complex subunit 8 protein-coding 1411 chr1 100894788 100894913 + 0 NA non-coding (NR_048570, exon 1 of 6) non-coding (NR_048570, exon 1 of 6) 329 NM_001261442 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 20087 chr3 126782624 126782778 + 0 NA intron (NM_032343, intron 4 of 7) intron (NM_032343, intron 4 of 7) 78481 NM_001320610 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 5785 chr11 86116418 86116522 + 0 NA Intergenic Intergenic -46589 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 1480 chr1 109532976 109533093 + 0 NA Intergenic Intergenic -6838 NM_031936 83873 Hs.709782 NM_031936 ENSG00000156097 GPR61 BALGR|GPCR3 G protein-coupled receptor 61 protein-coding 31102 chrX 136496950 136497054 + 0 NA promoter-TSS (NM_001163280) promoter-TSS (NM_001163280) -77 NM_001163280 27336 Hs.204475 NM_014500 ENSG00000102241 HTATSF1 TAT-SF1|TATSF1|dJ196E23.2 HIV-1 Tat specific factor 1 protein-coding 3581 chr10 35448242 35448346 + 0 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 111420 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 14525 chr19 44500606 44500710 + 0 NA promoter-TSS (NM_001278509) promoter-TSS (NM_001278509) -135 NM_001278509 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 25243 chr6 142300942 142301095 + 0 NA promoter-TSS (NM_020455) promoter-TSS (NM_020455) -901 NM_001032394 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 17589 chr20 10604667 10604797 + 0 NA intron (NM_001009608, intron 6 of 7) intron (NM_001009608, intron 6 of 7) 44963 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 27991 chr8 69903644 69903797 + 0 NA Intergenic AluJo|SINE|Alu -68656 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 23740 chr5 173057083 173057235 + 0 NA intron (NM_001168393, intron 1 of 3) CpG 807 NM_153607 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 18816 chr22 32474677 32474781 + 0 NA promoter-TSS (NM_012179) promoter-TSS (NM_012179) 9 NM_012179 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 1588 chr1 117210867 117211064 + 0 NA promoter-TSS (NM_024626) promoter-TSS (NM_024626) -5 NR_045604 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 7092 chr12 54359211 54359359 + 0 NA intron (NR_120487, intron 1 of 3) intron (NR_120487, intron 1 of 3) 5201 NM_020370 53831 Hs.306199 NM_020370 ENSG00000139572 GPR84 EX33|GPCR4 G protein-coupled receptor 84 protein-coding 24925 chr6 91694185 91694267 + 0 NA Intergenic Intergenic -3798 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility candidate 6 (non-protein coding) ncRNA 5744 chr11 82858970 82858977 + 0 NA intron (NM_001319214, intron 1 of 7) intron (NM_001319214, intron 1 of 7) 41630 NM_199418 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 4138 chr10 96375496 96375600 + 0 NA intron (NM_012465, intron 18 of 20) intron (NM_012465, intron 18 of 20) -16183 NM_033207 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 9313 chr14 70770623 70770787 + 0 NA intron (NM_001284231, intron 1 of 11) intron (NM_001284231, intron 1 of 11) 12747 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 29417 chr9 85053289 85053340 + 0 NA Intergenic Intergenic 382937 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 18481 chr21 33273074 33273237 + 0 NA intron (NM_000628, intron 2 of 6) Tigger3c|DNA|TcMar-Tigger 6795 NM_000628 3588 Hs.654593 NM_000628 ENSG00000243646 IL10RB CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2 interleukin 10 receptor subunit beta protein-coding 9643 chr14 98819608 98819743 + 0 NA Intergenic Intergenic 108062 NM_001346978 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 26051 chr7 36128792 36128813 + 0 NA Intergenic Intergenic -24425 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 23279 chr5 136080564 136080654 + 0 NA promoter-TSS (NR_030583) promoter-TSS (NR_030583) -11 NR_030583 100126299 NR_030583 ENSG00000270123 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|svtRNA2-1a vault RNA 2-1 ncRNA 18998 chr22 44697534 44697638 + 0 NA intron (NM_001198721, intron 2 of 9) intron (NM_001198721, intron 2 of 9) -4612 NM_181334 553158 Hs.102336 NM_181334 ENSG00000248405 PRR5-ARHGAP8 - PRR5-ARHGAP8 readthrough protein-coding 20518 chr3 158672629 158672781 + 0 NA promoter-TSS (NM_020169) promoter-TSS (NM_020169) -12 NM_020169 56925 Hs.478067 NM_020169 ENSG00000079257 LXN ECI|TCI latexin protein-coding 11266 chr16 31459337 31459374 + 0 NA 5' UTR (NM_001105247, exon 1 of 6) 5' UTR (NM_001105247, exon 1 of 6) 359 NM_024742 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 17640 chr20 13286720 13286874 + 0 NA intron (NM_080826, intron 3 of 5) intron (NM_080826, intron 3 of 5) -47110 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 24464 chr6 36577418 36577529 + 0 NA Intergenic Intergenic -16840 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 14556 chr19 45447055 45447184 + 0 NA Intergenic Intergenic 10465 NR_106736 102464836 NR_106736 ENSG00000275726 MIR6088 hsa-mir-6088 microRNA 6088 ncRNA 14917 chr2 2083423 2083527 + 0 NA intron (NM_001329851, intron 3 of 23) intron (NM_001329851, intron 3 of 23) -235757 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 20412 chr3 151816084 151816188 + 0 NA intron (NM_001086, intron 1 of 4) intron (NM_001086, intron 1 of 4) 2063 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 5662 chr11 74398752 74398925 + 0 NA promoter-TSS (NM_173582) promoter-TSS (NM_173582) -373 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 29495 chr9 89318733 89318862 + 0 NA promoter-TSS (NM_001282690) promoter-TSS (NM_001282690) -54 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 25770 chr7 17965722 17965840 + 0 NA Intergenic L2c|LINE|L2 -25273 NM_015132 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 19200 chr3 14806741 14806845 + 0 NA intron (NR_135245, intron 1 of 2) MIRc|SINE|MIR 4621 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 29477 chr9 88196665 88196769 + 0 NA Intergenic LTR29|LTR|ERV1 -61732 NM_001166137 645961 Hs.580879 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 19222 chr3 16906847 16906951 + 0 NA intron (NM_001144382, intron 1 of 5) intron (NM_001144382, intron 1 of 5) 21940 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 23728 chr5 172697526 172697630 + 0 NA Intergenic Intergenic 35413 NR_049799 100847029 NR_049799 ENSG00000265160 MIR5003 - microRNA 5003 ncRNA 7277 chr12 75852258 75852345 + 0 NA Intergenic Intergenic 179475 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 10706 chr15 90479765 90479977 + 0 NA intron (NM_003870, intron 26 of 37) intron (NM_003870, intron 26 of 37) -50015 NM_001042574 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 16092 chr2 108595090 108595157 + 0 NA intron (NM_001193488, intron 1 of 9) intron (NM_001193488, intron 1 of 9) 6657 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 21310 chr4 41160143 41160247 + 0 NA intron (NM_001166050, intron 1 of 17) intron (NM_001166050, intron 1 of 17) 54423 NM_001166050 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 1689 chr1 150611642 150611806 + 0 NA Intergenic Intergenic 17409 NM_207045 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding 7713 chr12 117850166 117850270 + 0 NA intron (NM_173598, intron 3 of 19) intron (NM_173598, intron 3 of 19) 118005 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 10962 chr16 4802263 4802367 + 0 NA TTS (NM_032569) TTS (NM_032569) 635 NR_046480 79641 Hs.459795 NM_024589 ENSG00000067836 ROGDI KTZS rogdi homolog protein-coding 3312 chr10 14074532 14074637 + 0 NA non-coding (NR_120638, exon 1 of 3) non-coding (NR_120638, exon 1 of 3) 300 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 8797 chr14 31457420 31457578 + 0 NA promoter-TSS (NM_080664) promoter-TSS (NM_080664) -25 NM_080664 112487 Hs.116014 NM_080664 ENSG00000129480 DTD2 C14orf126 D-tyrosyl-tRNA deacylase 2 (putative) protein-coding 27260 chr7 155224717 155224821 + 0 NA Intergenic Intergenic -73003 NM_001346590 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 20058 chr3 124688951 124689085 + 0 NA intron (NM_001024660, intron 51 of 59) intron (NM_001024660, intron 51 of 59) -41348 NM_000373 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 2897 chr1 228544225 228544329 + 0 NA Intergenic HSAT4|Satellite|centr -31989 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 7940 chr13 20419850 20419930 + 0 NA intron (NM_015974, intron 5 of 7) intron (NM_015974, intron 5 of 7) 13956 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 20531 chr3 159634602 159634706 + 0 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 133958 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 28487 chr8 118142755 118142951 + 0 NA Intergenic Intergenic -31034 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 10059 chr15 49170085 49170189 + 0 NA promoter-TSS (NR_039866) promoter-TSS (NR_039866) 121 NM_002044 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 26323 chr7 56051556 56051731 + 0 NA promoter-TSS (NM_004577) promoter-TSS (NM_004577) -42 NM_001762 908 Hs.82916 NM_001762 ENSG00000146731 CCT6A CCT-zeta|CCT-zeta-1|CCT6|Cctz|HTR3|MoDP-2|TCP-1-zeta|TCP20|TCPZ|TTCP20 chaperonin containing TCP1 subunit 6A protein-coding 4638 chr10 132571258 132571417 + 0 NA intron (NM_005539, intron 1 of 15) intron (NM_005539, intron 1 of 15) 33558 NM_005539 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 30438 chrX 1212559 1212692 + 0 NA promoter-TSS (NM_022148) promoter-TSS (NM_022148) 98 NM_022148 64109 Hs.287729 NM_022148 ENSG00000205755 CRLF2 CRL2|CRLF2Y|TSLPR cytokine receptor-like factor 2 protein-coding 10674 chr15 89750828 89750943 + 0 NA exon (NM_018670, exon 1 of 2) exon (NM_018670, exon 1 of 2) 424 NM_018670 55897 Hs.447531 NM_018670 ENSG00000166823 MESP1 bHLHc5 mesoderm posterior bHLH transcription factor 1 protein-coding 22424 chr5 40410530 40410634 + 0 NA Intergenic Intergenic -269348 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 3016 chr1 235469070 235469190 + 0 NA intron (NM_001277155, intron 7 of 7) L2b|LINE|L2 35351 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 19602 chr3 58526744 58526848 + 0 NA intron (NM_003500, intron 9 of 14) MIRb|SINE|MIR 10406 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|THCCox acyl-CoA oxidase 2 protein-coding 7406 chr12 90253863 90253937 + 0 NA Intergenic Intergenic -39418 NR_135018 105369893 Hs.577777 NR_135018 LOC105369893 - uncharacterized LOC105369893 ncRNA 20700 chr3 177197421 177197567 + 0 NA promoter-TSS (NM_001321194) promoter-TSS (NM_001321194) -168 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 17432 chr20 775881 775985 + 0 NA Intergenic Intergenic -7349 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 12401 chr17 37399570 37399723 + 0 NA intron (NM_198839, intron 1 of 59).2 intron (NM_198839, intron 1 of 59).2 7165 NM_198834 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 2855 chr1 226408204 226408308 + 0 NA promoter-TSS (NM_001618) promoter-TSS (NM_001618) -156 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 24636 chr6 47044596 47044708 + 0 NA Intergenic Intergenic -2289 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 8908 chr14 37624087 37624169 + 0 NA intron (NM_001310135, intron 3 of 32) intron (NM_001310135, intron 3 of 32) 28929 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 11529 chr16 68528726 68528853 + 0 NA Intergenic Intergenic -10424 NM_001305207 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 13720 chr18 63788571 63788675 + 0 NA intron (NM_001261831, intron 2 of 6) Tigger3b|DNA|TcMar-Tigger 10846 NM_001261830 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 13034 chr17 76141266 76141408 + 0 NA promoter-TSS (NM_001454) promoter-TSS (NM_001454) -38 NM_001454 2302 Hs.651204 NM_001454 ENSG00000129654 FOXJ1 FKHL13|HFH-4|HFH4 forkhead box J1 protein-coding 26364 chr7 67302289 67302431 + 0 NA promoter-TSS (NR_040586) promoter-TSS (NR_040586) 82 NR_046299 5382 Hs.712714 NR_022007 PMS2P4 PMS2L4|PMS6 PMS1 homolog 2, mismatch repair system component pseudogene 4 pseudo 6662 chr12 14260106 14260244 + 0 NA Intergenic Intergenic -105457 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 14356 chr19 33906132 33906236 + 0 NA Intergenic CpG 109338 NM_024076 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 4810 chr11 10366593 10366682 + 0 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) 58324 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 13652 chr18 59308687 59308791 + 0 NA intron (NM_181654, intron 2 of 2) CpG 9910 NM_181654 339302 Hs.449884 NM_181654 ENSG00000166569 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 27148 chr7 142587738 142587842 + 0 NA Intergenic Intergenic -78509 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 26426 chr7 74610456 74610591 + 0 NA Intergenic MIRb|SINE|MIR -47142 NM_032999 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 3693 chr10 52884035 52884210 + 0 NA Intergenic Tigger3c|DNA|TcMar-Tigger -112422 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 739 chr1 42816978 42817021 + 0 NA promoter-TSS (NM_001017922) promoter-TSS (NM_001017922) -106 NM_001017922 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 7437 chr12 93442173 93442277 + 0 NA promoter-TSS (NM_003348) promoter-TSS (NM_003348) 25 NM_003348 7334 Hs.524630 NM_003348 ENSG00000177889 UBE2N HEL-S-71|UBC13|UBCHBEN; UBC13|UbcH-ben|UbcH13 ubiquitin conjugating enzyme E2 N protein-coding 28985 chr9 22009271 22009422 + 0 NA promoter-TSS (NM_004936) promoter-TSS (NM_004936) -33 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 876 chr1 52662804 52662928 + 0 NA intron (NR_135157, intron 3 of 4) L2b|LINE|L2 29522 NM_001042693 348378 Hs.424589 NM_001042693 ENSG00000182183 FAM159A PRO7171|WWLS2783 family with sequence similarity 159 member A protein-coding 5636 chr11 73185962 73186066 + 0 NA Intergenic Intergenic -32284 NM_176072 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 29766 chr9 106916992 106917112 + 0 NA intron (NM_001347997, intron 1 of 12) intron (NM_001347997, intron 1 of 12) 53955 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 23549 chr5 151637852 151637973 + 0 NA Intergenic Intergenic -39033 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CTB-113P19.1 - uncharacterized LOC101927096 ncRNA 12906 chr17 69175825 69175929 + 0 NA intron (NM_080282, intron 23 of 39) MER44B|DNA|TcMar-Tigger -34003 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 25153 chr6 130602389 130602525 + 0 NA Intergenic Intergenic 165340 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 9640 chr14 98494712 98494751 + 0 NA Intergenic MIRc|SINE|MIR -216882 NM_182560 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 protein-coding 21085 chr3 197736937 197737086 + 0 NA promoter-TSS (NM_014687) promoter-TSS (NM_014687) -85 NM_014687 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 RUN and cysteine rich domain containing beclin 1 interacting protein protein-coding 4751 chr11 6607059 6607163 + 0 NA intron (NM_001278442, intron 2 of 11) intron (NM_001278442, intron 2 of 11) 3301 NM_001014795 3611 Hs.706355 NM_004517 ENSG00000166333 ILK HEL-S-28|ILK-1|ILK-2|P59|p59ILK integrin linked kinase protein-coding 18611 chr22 17633490 17633637 + 0 NA Intergenic Intergenic -4741 NM_001039366 529 Hs.517338 NM_001696 ENSG00000131100 ATP6V1E1 ATP6E|ATP6E2|ATP6V1E|P31|Vma4 ATPase H+ transporting V1 subunit E1 protein-coding 18065 chr20 44407502 44407653 + 0 NA promoter-TSS (NR_037419) promoter-TSS (NR_037419) -543 NR_037419 100500813 NR_037419 ENSG00000266151 MIR3646 - microRNA 3646 ncRNA 7151 chr12 57096186 57096290 + 0 NA TTS (NM_001330305) TTS (NM_001330305) 7344 NM_001330305 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding 26135 chr7 42237181 42237333 + 0 NA promoter-TSS (NM_000168) promoter-TSS (NM_000168) -238 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 3624 chr10 43690221 43690325 + 0 NA Intergenic CpG -41395 NM_001324166 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 29803 chr9 108549275 108549390 + 0 NA Intergenic Intergenic 306663 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 24976 chr6 107028138 107028167 + 0 NA promoter-TSS (NM_001142468) promoter-TSS (NM_001142468) -20 NM_001142470 51250 Hs.486084 NM_016487 ENSG00000130349 C6orf203 HSPC230|PRED31 chromosome 6 open reading frame 203 protein-coding 772 chr1 43935771 43935834 + 0 NA intron (NM_057091, intron 3 of 4) intron (NM_057091, intron 3 of 4) 2482 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 3803 chr10 68097286 68097390 + 0 NA Intergenic LFSINE_Vert|SINE|tRNA -8779 NM_001256267 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|RCM4 myopalladin protein-coding 8393 chr13 77507944 77508167 + 0 NA Intergenic Intergenic -27619 NM_144777 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 8053 chr13 30421540 30421644 + 0 NA intron (NR_125771, intron 1 of 1) CpG 652 NR_125771 103724387 NR_125771 ENSG00000225039 LINC01058 - long intergenic non-protein coding RNA 1058 ncRNA 29707 chr9 100587569 100587584 + 0 NA 3' UTR (NM_001018116, exon 2 of 2) 3' UTR (NM_001018116, exon 2 of 2) 9497 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 MURC CAVIN4|cavin-4 muscle related coiled-coil protein protein-coding 7536 chr12 101894881 101895006 + 0 NA intron (NM_018370, intron 1 of 6) intron (NM_018370, intron 1 of 6) 17616 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 27947 chr8 64641921 64642025 + 0 NA intron (NM_004820, intron 1 of 5) MLT1I|LTR|ERVL-MaLR 61735 NM_152414 27319 Hs.388788 NM_152414 ENSG00000180828 BHLHE22 BHLHB5|Beta3|Beta3a|CAGL85|TNRC20 basic helix-loop-helix family member e22 protein-coding 31078 chrX 133726220 133726365 + 0 NA intron (NM_001164617, intron 3 of 8) intron (NM_001164617, intron 3 of 8) 259354 NM_001164617 2719 Hs.644108 NM_004484 ENSG00000147257 GPC3 DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1 glypican 3 protein-coding 2032 chr1 168178845 168178996 + 0 NA promoter-TSS (NM_152902) promoter-TSS (NM_152902) 75 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 31133 chrX 149539418 149539522 + 0 NA intron (NR_027455, intron 1 of 9) intron (NR_027455, intron 1 of 9) 282 NR_027455 100131434 Hs.669775 NM_001039766 ENSG00000241769 LINC00893 - long intergenic non-protein coding RNA 893 ncRNA 24421 chr6 33613914 33613958 + 0 NA Intergenic Intergenic -7443 NM_002224 3710 Hs.65758 NM_002224 ENSG00000096433 ITPR3 IP3R|IP3R3 inositol 1,4,5-trisphosphate receptor type 3 protein-coding 8256 chr13 49098331 49098476 + 0 NA intron (NR_103528, intron 3 of 25) intron (NR_103528, intron 3 of 25) -11900 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 22204 chr5 9924679 9924847 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -20939 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 13144 chr17 81860921 81860991 + 0 NA promoter-TSS (NM_000918) promoter-TSS (NM_000918) -288 NM_000918 5034 Hs.464336 NM_000918 ENSG00000185624 P4HB CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB prolyl 4-hydroxylase subunit beta protein-coding 653 chr1 37860216 37860317 + 0 NA promoter-TSS (NM_005955) promoter-TSS (NM_005955) -646 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 17896 chr20 34335778 34335933 + 0 NA Intergenic Intergenic -24053 NM_001161766 191 Hs.388004 NM_000687 ENSG00000101444 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 27732 chr8 41490400 41490529 + 0 NA promoter-TSS (NM_001174124) promoter-TSS (NM_001174124) -98 NM_016099 51125 Hs.654773 NM_016099 ENSG00000147533 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 1692 chr1 150697244 150697358 + 0 NA promoter-TSS (NM_018178) promoter-TSS (NM_018178) -105 NM_018178 55204 Hs.203699 NM_018178 ENSG00000143457 GOLPH3L GPP34R golgi phosphoprotein 3 like protein-coding 4866 chr11 13260722 13260920 + 0 NA Intergenic L2c|LINE|L2 -16906 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 28584 chr8 124856862 124856991 + 0 NA Intergenic Intergenic -34868 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 4273 chr10 103241768 103241910 + 0 NA Intergenic Intergenic -4048 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 24361 chr6 31542013 31542113 + 0 NA promoter-TSS (NR_003065) promoter-TSS (NR_003065) -241 NR_133675 106478957 NR_133674 ENSG00000234006 DDX39B-AS1 - DDX39B antisense RNA 1 ncRNA 24249 chr6 27132730 27132842 + 0 NA promoter-TSS (NM_021058) promoter-TSS (NM_021058) 10 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 23592 chr5 157142832 157142978 + 0 NA promoter-TSS (NM_001100816) promoter-TSS (NM_001100816) 5 NM_004270 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 21935 chr4 155953631 155953735 + 0 NA intron (NM_001334, intron 1 of 7) CpG 213 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 27534 chr8 23345489 23345542 + 0 NA intron (NM_002318, intron 3 of 13) intron (NM_002318, intron 3 of 13) 9307 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 8283 chr13 51070226 51070283 + 0 NA Intergenic Intergenic -4097 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 24803 chr6 75524486 75524555 + 0 NA Intergenic Intergenic -30606 NM_001300866 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 22101 chr4 184826096 184826097 + 0 NA promoter-TSS (NM_001995) promoter-TSS (NM_001995) 18 NM_001995 2180 Hs.406678 NM_001995 ENSG00000151726 ACSL1 ACS1|FACL1|FACL2|LACS|LACS1|LACS2 acyl-CoA synthetase long-chain family member 1 protein-coding 6834 chr12 31733092 31733222 + 0 NA Intergenic LTR33|LTR|ERVL -3983 NM_001278412 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 22020 chr4 173252368 173252472 + 0 NA intron (NM_017423, intron 2 of 11) intron (NM_017423, intron 2 of 11) -15740 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 11321 chr16 50025061 50025192 + 0 NA promoter-TSS (NM_001281789) promoter-TSS (NM_001281789) -80 NM_153261 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 16987 chr2 207258645 207258735 + 0 NA Intergenic Intergenic -4374 NR_110283 101927865 Hs.574609 NR_110283 LOC101927865 - uncharacterized LOC101927865 ncRNA 21344 chr4 49102531 49102670 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 115958 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 10494 chr15 77633622 77633731 + 0 NA intron (NM_001301195, intron 3 of 3) intron (NM_001301195, intron 3 of 3) -1149 NM_032808 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 27737 chr8 41770685 41770831 + 0 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 26864 NM_000037 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 23132 chr5 125484331 125484484 + 0 NA Intergenic Intergenic -8854 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 7756 chr12 120529096 120529208 + 0 NA promoter-TSS (NM_032314) promoter-TSS (NM_032314) 9 NM_032314 84274 Hs.17250 NM_032314 ENSG00000110871 COQ5 - coenzyme Q5, methyltransferase protein-coding 5599 chr11 69854815 69854919 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -35443 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 743 chr1 42924289 42924430 + 0 NA Intergenic CpG -34690 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 16348 chr2 133777730 133777834 + 0 NA Intergenic Intergenic -209322 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 15682 chr2 65383113 65383217 + 0 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -16368 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 10625 chr15 86347401 86347505 + 0 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -30485 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 30613 chrX 38327555 38327659 + 0 NA promoter-TSS (NM_000328) promoter-TSS (NM_000328) -72 NM_000328 6103 Hs.61438 NM_000328 ENSG00000156313 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 8835 chr14 34085040 34085204 + 0 NA Intergenic AluSz|SINE|Alu -134044 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 28220 chr8 94657514 94657528 + 0 NA intron (NM_017697, intron 4 of 15) intron (NM_017697, intron 4 of 15) 16385 NM_001034915 54845 Hs.487471 NM_017697 ENSG00000104413 ESRP1 RBM35A|RMB35A epithelial splicing regulatory protein 1 protein-coding 17941 chr20 35954347 35954478 + 0 NA intron (NM_016558, intron 2 of 2) CpG 214 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 14100 chr19 10960740 10960821 + 0 NA promoter-TSS (NM_001128844) promoter-TSS (NM_001128844) -142 NM_003072 6597 Hs.327527 NM_003072 ENSG00000127616 SMARCA4 BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 28031 chr8 73746987 73747075 + 0 NA promoter-TSS (NM_001164380) promoter-TSS (NM_001164380) -104 NM_001164385 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 27642 chr8 29970143 29970178 + 0 NA Intergenic Intergenic -12812 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 24281 chr6 28489408 28489512 + 0 NA Intergenic Intergenic 26333 NM_182701 257202 Hs.448570 NM_182701 ENSG00000198704 GPX6 GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1 glutathione peroxidase 6 protein-coding 27889 chr8 57343413 57343550 + 0 NA promoter-TSS (NR_125818) promoter-TSS (NR_125818) -306 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 20128 chr3 129399460 129399474 + 0 NA promoter-TSS (NR_003111) promoter-TSS (NR_003111) -28 NR_003111 132241 Hs.477537 NR_003111 ENSG00000251474 RPL32P3 - ribosomal protein L32 pseudogene 3 pseudo 27267 chr7 155644585 155644606 + 0 NA promoter-TSS (NR_126344) promoter-TSS (NR_126344) 86 NM_053043 155435 Hs.591815 NM_053043 ENSG00000184863 RBM33 PRR8 RNA binding motif protein 33 protein-coding 23457 chr5 148011830 148011981 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -52067 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 6753 chr12 25769218 25769322 + 0 NA Intergenic Intergenic 104809 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 10837 chr16 234662 234816 + 0 NA non-coding (NR_104317, exon 1 of 14) non-coding (NR_104317, exon 1 of 14) 193 NM_001284497 83986 Hs.513225 NM_032039 ENSG00000167930 FAM234A C16orf9|ITFG3|gs19 family with sequence similarity 234 member A protein-coding 15527 chr2 48707587 48707691 + 0 NA intron (NM_000233, intron 8 of 10) L1PA6|LINE|L1 48102 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 1755 chr1 153100359 153100531 + 0 NA Intergenic AluSz6|SINE|Alu -5917 NM_001024209 6704 Hs.568518 NM_001024209 ENSG00000203785 SPRR2E - small proline rich protein 2E protein-coding 25087 chr6 122799995 122800139 + 0 NA intron (NM_006714, intron 3 of 7) AluJb|SINE|Alu 11018 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 488 chr1 28860496 28860577 + 0 NA intron (NM_000911, intron 2 of 2) MIRb|SINE|MIR -26555 NM_001166005 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 1138 chr1 77219380 77219522 + 0 NA promoter-TSS (NM_005482) promoter-TSS (NM_005482) -4 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 14107 chr19 11197617 11197754 + 0 NA promoter-TSS (NM_001136191) promoter-TSS (NM_001136191) -118 NM_001136191 25959 Hs.284208 NM_015493 ENSG00000197256 KANK2 ANKRD25|MXRA3|PPKWH|SIP KN motif and ankyrin repeat domains 2 protein-coding 26589 chr7 92424648 92424752 + 0 NA intron (NM_001317905, intron 5 of 9) intron (NM_001317905, intron 5 of 9) 12614 NM_001317905 105375396 NM_001317905 ENSG00000230927 LOC105375396 - bax inhibitor 1-like protein-coding 28473 chr8 117619447 117619576 + 0 NA Intergenic L2a|LINE|L2 98798 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 9350 chr14 73644866 73644990 + 0 NA promoter-TSS (NM_001201366) promoter-TSS (NM_001201366) 53 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16 dynein axonemal light chain 1 protein-coding 18781 chr22 30304918 30305022 + 0 NA intron (NM_001204240, intron 1 of 8) intron (NM_001204240, intron 1 of 8) -15343 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 GATSL3 CASTOR1 GATS protein like 3 protein-coding 1032 chr1 64966435 64966572 + 0 NA promoter-TSS (NM_001321855) promoter-TSS (NM_001321855) 66 NM_001321855 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 24746 chr6 57089932 57090079 + 0 NA promoter-TSS (NM_001257273) promoter-TSS (NM_001257273) -5 NM_001257273 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 18837 chr22 36029225 36029239 + 0 NA promoter-TSS (NM_001082578).2 promoter-TSS (NM_001082578).2 -695 NM_001082579 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding protein, fox-1 homolog 2 protein-coding 16841 chr2 191219452 191219626 + 0 NA Intergenic L2b|LINE|L2 -25737 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 6584 chr12 9650862 9650966 + 0 NA intron (NR_046444, intron 1 of 4) intron (NR_046444, intron 1 of 4) 2867 NR_046446 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 27867 chr8 55901777 55901877 + 0 NA intron (NM_002350, intron 1 of 12) intron (NM_002350, intron 1 of 12) 22000 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 25466 chr6 165574821 165574927 + 0 NA intron (NM_001130690, intron 1 of 21) intron (NM_001130690, intron 1 of 21) 87226 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 20333 chr3 144324236 144324340 + 0 NA Intergenic L1MA2|LINE|L1 350963 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 C3orf58 DIA1|GoPro49|HASF chromosome 3 open reading frame 58 protein-coding 8474 chr13 97434164 97434219 + 0 NA promoter-TSS (NM_021033) promoter-TSS (NM_021033) -30 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 4943 chr11 17238556 17238704 + 0 NA Intergenic Intergenic -30634 NM_002645 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 11612 chr16 72996620 72996724 + 0 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 51703 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 31200 chrX 155026626 155026730 + 0 NA promoter-TSS (NM_023934) promoter-TSS (NM_023934) -111 NM_023934 65991 Hs.356050 NM_023934 ENSG00000165775 FUNDC2 DC44|HCBP6|HCC3|PD03104 FUN14 domain containing 2 protein-coding 20125 chr3 129278772 129278877 + 0 NA promoter-TSS (NM_020187) promoter-TSS (NM_020187) -17 NM_020187 56941 Hs.458320 NM_020187 ENSG00000183624 HMCES C3orf37|DC12|SRAPD1 5-hydroxymethylcytosine (hmC) binding, ES cell-specific protein-coding 18087 chr20 45357528 45357659 + 0 NA Intergenic MIRc|SINE|MIR -4344 NM_001197129 90196 Hs.655055 NM_033542 ENSG00000204070 SYS1 C20orf169|dJ453C12.4|dJ453C12.4.1 SYS1, golgi trafficking protein protein-coding 27880 chr8 56890106 56890210 + 0 NA Intergenic Intergenic 103713 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 11701 chr16 80167660 80167764 + 0 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) 372463 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 25541 chr7 1504566 1504670 + 0 NA promoter-TSS (NM_001080453) promoter-TSS (NM_001080453) -236 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 8928 chr14 42215032 42215186 + 0 NA Intergenic Intergenic 608253 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 28849 chr8 144767596 144767623 + 0 NA Intergenic Intergenic -12024 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 14538 chr19 45001264 45001378 + 0 NA promoter-TSS (NM_006509) promoter-TSS (NM_006509) -128 NM_006509 5971 Hs.654402 NM_006509 ENSG00000104856 RELB I-REL|IREL|REL-B RELB proto-oncogene, NF-kB subunit protein-coding 10799 chr15 99565875 99566004 + 0 NA promoter-TSS (NM_005587) promoter-TSS (NM_005587) 11 NM_001130926 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 24246 chr6 26956265 26956412 + 0 NA promoter-TSS (NR_026775) promoter-TSS (NR_026775) 216 NR_003504 387036 Hs.675815 NM_001033523 ENSG00000241549 GUSBP2 GUSBL1|GUSBP4|SMA3-L|SMAC3L|SMAC3L2|b55C20.1|bA239L20.1|bA239L20.5|bGLU-Lp glucuronidase, beta pseudogene 2 pseudo 8622 chr13 110715451 110715511 + 0 NA promoter-TSS (NM_001267728) promoter-TSS (NM_001267728) 44 NM_001267728 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 14815 chr19 55408211 55408315 + 0 NA promoter-TSS (NM_014501) promoter-TSS (NM_014501) -306 NM_014501 27338 Hs.396393 NM_014501 ENSG00000108106 UBE2S E2-EPF|E2EPF|EPF5 ubiquitin conjugating enzyme E2 S protein-coding 5830 chr11 90178893 90178997 + 0 NA intron (NM_005467, intron 16 of 18) MIR|SINE|MIR 44295 NM_005467 10003 Hs.112482 NM_005467 ENSG00000077616 NAALAD2 GCPIII|GPCIII|NAADALASE2|NAALADASE2 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding 28517 chr8 119832878 119832901 + 0 NA promoter-TSS (NM_003184) promoter-TSS (NM_003184) -55 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 64 chr1 3900829 3900853 + 0 NA promoter-TSS (NM_207356) promoter-TSS (NM_207356) 437 NR_024455 100133612 Hs.307652 NR_024455 ENSG00000236423 LINC01134 - long intergenic non-protein coding RNA 1134 ncRNA 25009 chr6 110510061 110510165 + 0 NA Intergenic MER41B|LTR|ERV1 -33472 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 10170 chr15 57607752 57607763 + 0 NA intron (NR_104371, intron 2 of 16) intron (NR_104371, intron 2 of 16) 15853 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 27447 chr8 17864644 17864748 + 0 NA exon (NM_147203, exon 8 of 8) exon (NM_147203, exon 8 of 8) 30708 NM_147203 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 22344 chr5 33049915 33050019 + 0 NA Intergenic L1M2a|LINE|L1 102524 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 4085 chr10 93333795 93333899 + 0 NA exon (NM_013451, exon 42 of 54) exon (NM_013451, exon 42 of 54) 148470 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 14943 chr2 7192168 7192272 + 0 NA Intergenic Intergenic -114340 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 5590 chr11 69281188 69281307 + 0 NA Intergenic Intergenic -12891 NM_001300923 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 11920 chr17 2407019 2407117 + 0 NA TTS (NR_028335) TTS (NR_028335) -6104 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 23847 chr5 181222421 181222457 + 0 NA promoter-TSS (NM_033549) promoter-TSS (NM_033549) 194 NR_039781 100616342 NR_039781 ENSG00000264732 MIR4638 mir-4638 microRNA 4638 ncRNA 18969 chr22 42079593 42079739 + 0 NA promoter-TSS (NM_033318) promoter-TSS (NM_033318) -25 NM_033318 91689 Hs.306083 NM_033318 ENSG00000183172 SMDT1 C22orf32|DDDD|EMRE|dJ186O1.1 single-pass membrane protein with aspartate rich tail 1 protein-coding 5124 chr11 34051429 34051555 + 0 NA promoter-TSS (NM_203364) promoter-TSS (NM_203364) -191 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 24617 chr6 45164489 45164593 + 0 NA intron (NM_003599, intron 2 of 10) intron (NM_003599, intron 2 of 10) 33229 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 23294 chr5 137754380 137754541 + 0 NA promoter-TSS (NM_006805) promoter-TSS (NM_006805) -110 NM_006805 10949 Hs.96996 NM_006805 ENSG00000177733 HNRNPA0 HNRPA0 heterogeneous nuclear ribonucleoprotein A0 protein-coding 19454 chr3 46979632 46979774 + 0 NA promoter-TSS (NM_015175) promoter-TSS (NM_015175) 20 NM_015175 23218 Hs.437043 NM_015175 ENSG00000160796 NBEAL2 BDPLT4|GPS neurobeachin like 2 protein-coding 6346 chr11 129731516 129731620 + 0 NA Intergenic Intergenic -84213 NM_138788 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 5334 chr11 61153397 61153459 + 0 NA intron (NM_017966, intron 1 of 4) THE1D|LTR|ERVL-MaLR 8016 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C, ESCRT-I subunit protein-coding 6526 chr12 6663261 6663406 + 0 NA promoter-TSS (NM_001127582) promoter-TSS (NM_001127582) -191 NM_001127586 51147 Hs.524210 NM_016162 ENSG00000111653 ING4 my036|p29ING4 inhibitor of growth family member 4 protein-coding 1173 chr1 83033850 83033954 + 0 NA Intergenic MLT1A|LTR|ERVL-MaLR -47694 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 4656 chr11 394072 394162 + 0 NA promoter-TSS (NM_007183) promoter-TSS (NM_007183) -66 NM_007183 11187 Hs.534395 NM_007183 ENSG00000184363 PKP3 - plakophilin 3 protein-coding 26925 chr7 123154412 123154461 + 0 NA intron (NM_001324400, intron 7 of 17) intron (NM_001324400, intron 7 of 17) 45535 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 24180 chr6 22221745 22221849 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -74604 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 2085 chr1 174159282 174159292 + 0 NA promoter-TSS (NM_014857) promoter-TSS (NM_014857) 0 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 LOC102724601 - uncharacterized LOC102724601 ncRNA 30544 chrX 20067776 20067866 + 0 NA intron (NM_152780, intron 1 of 15) intron (NM_152780, intron 1 of 15) 48817 NM_001168467 256714 Hs.127951 NM_152780 ENSG00000184368 MAP7D2 - MAP7 domain containing 2 protein-coding 22884 chr5 92019558 92019662 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -636237 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 17690 chr20 18057882 18058015 + 0 NA promoter-TSS (NM_021220) promoter-TSS (NM_021220) -66 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 26262 chr7 50531411 50531515 + 0 NA promoter-TSS (NR_033845) promoter-TSS (NR_033845) -296 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 3383 chr10 21336959 21337030 + 0 NA Intergenic Intergenic 159647 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 30194 chr9 128689046 128689176 + 0 NA promoter-TSS (NM_003011) promoter-TSS (NM_003011) -119 NM_003011 6418 Hs.436687 NM_003011 ENSG00000119335 SET 2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA SET nuclear proto-oncogene protein-coding 6534 chr12 6851906 6852055 + 0 NA promoter-TSS (NM_001331019) promoter-TSS (NM_001331019) -50 NM_001297604 83461 Hs.524216 NM_031299 ENSG00000111665 CDCA3 GRCC8|TOME-1 cell division cycle associated 3 protein-coding 19322 chr3 33300030 33300208 + 0 NA intron (NM_001171713, intron 2 of 13) intron (NM_001171713, intron 2 of 13) 22674 NM_001171713 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 17403 chr2 241356008 241356113 + 0 NA promoter-TSS (NM_001282983) promoter-TSS (NM_001282983) -189 NM_001282983 9855 Hs.726316 NM_014808 ENSG00000006607 FARP2 FIR|FRG|PLEKHC3 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding 20311 chr3 142619256 142619403 + 0 NA intron (NM_001145319, intron 1 of 15) intron (NM_001145319, intron 1 of 15) -4095 NM_002670 5357 Hs.203637 NM_002670 ENSG00000120756 PLS1 - plastin 1 protein-coding 120 chr1 8858309 8858413 + 0 NA Intergenic Intergenic 8229 NR_106786 102465436 NR_106786 ENSG00000274258 MIR6728 hsa-mir-6728 microRNA 6728 ncRNA 24873 chr6 84836402 84836561 + 0 NA Intergenic Intergenic -72245 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 8645 chr13 113331503 113331646 + 0 NA intron (NM_001286732, intron 5 of 6) intron (NM_001286732, intron 5 of 6) -20099 NR_046541 100874068 Hs.661837 NR_046541 GRTP1-AS1 - GRTP1 antisense RNA 1 ncRNA 7238 chr12 67531259 67531363 + 0 NA intron (NR_103861, intron 1 of 2) intron (NR_103861, intron 1 of 2) 11229 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LOC100507175 - uncharacterized LOC100507175 ncRNA 27223 chr7 151028163 151028322 + 0 NA promoter-TSS (NM_001282293) promoter-TSS (NM_001282293) -180 NM_001282291 11194 Hs.647118 NM_007188 ENSG00000197150 ABCB8 EST328128|M-ABC1|MABC1 ATP binding cassette subfamily B member 8 protein-coding 6280 chr11 125083092 125083227 + 0 NA intron (NM_198277, intron 10 of 18) intron (NM_198277, intron 10 of 18) 20042 NM_198277 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 10104 chr15 51982266 51982374 + 0 NA Intergenic Intergenic -10519 NM_001323903 123169 Hs.567662 NM_138792 ENSG00000166477 LEO1 RDL LEO1 homolog, Paf1/RNA polymerase II complex component protein-coding 30446 chrX 2707396 2707536 + 0 NA intron (NM_001122898, intron 1 of 8) intron (NM_001122898, intron 1 of 8) 16333 NM_001321370 4267 Hs.653349 NM_002414 ENSG00000002586 CD99 HBA71|MIC2|MIC2X|MIC2Y|MSK5X CD99 molecule protein-coding 2442 chr1 203756659 203756775 + 0 NA Intergenic MER41B|LTR|ERV1 -8439 NM_017773 54900 Hs.272794 NM_017773 ENSG00000122188 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 24672 chr6 49550561 49550665 + 0 NA 5' UTR (NM_001145652, exon 1 of 1) 5' UTR (NM_001145652, exon 1 of 1) 213 NM_001145652 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 1987 chr1 165408727 165408831 + 0 NA intron (NM_001256571, intron 6 of 8) intron (NM_001256571, intron 6 of 8) 16205 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 20850 chr3 185688938 185689042 + 0 NA intron (NR_138486, intron 6 of 15) intron (NR_138486, intron 6 of 15) -24262 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 21009 chr3 194091300 194091404 + 0 NA Intergenic Intergenic -20382 NR_136179 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 4920 chr11 16613738 16613877 + 0 NA Intergenic CpG -124794 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 11622 chr16 74462413 74462517 + 0 NA intron (NM_012201, intron 21 of 26) intron (NM_012201, intron 21 of 26) -40995 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 21355 chr4 49642588 49642736 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 656020 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 27411 chr8 12726640 12726744 + 0 NA promoter-TSS (NR_037495) promoter-TSS (NR_037495) -545 NR_037495 100500838 NR_037495 ENSG00000283523 MIR3926-2 mir-3926-2 microRNA 3926-2 ncRNA 18246 chr20 53621519 53621589 + 0 NA intron (NR_134576, intron 2 of 2) intron (NR_134576, intron 2 of 2) 13200 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 16034 chr2 101328506 101328600 + 0 NA Intergenic L2|LINE|L2 19103 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 19650 chr3 69541241 69541429 + 0 NA Intergenic Intergenic -155031 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 18313 chr20 57435872 57435976 + 0 NA Intergenic Intergenic 44526 NM_001291780 55544 Hs.236361 NM_017495 ENSG00000132819 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 2602 chr1 211382705 211382829 + 0 NA promoter-TSS (NR_026761) promoter-TSS (NR_026761) 12 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 399 chr1 25859445 25859459 + 0 NA promoter-TSS (NM_001287490) promoter-TSS (NM_001287490) 6 NM_001287490 79000 Hs.149305 NM_024037 ENSG00000127423 AUNIP AIBP|C1orf135 aurora kinase A and ninein interacting protein protein-coding 31198 chrX 154762730 154762780 + 0 NA promoter-TSS (NM_001142463) promoter-TSS (NM_001142463) 13 NM_001363 1736 Hs.4747 NM_001363 ENSG00000130826 DKC1 CBF5|DKC|DKCX|NAP57|NOLA4|XAP101 dyskerin pseudouridine synthase 1 protein-coding 27872 chr8 56074517 56074680 + 0 NA promoter-TSS (NM_001146227) promoter-TSS (NM_001146227) -17 NM_001023 6224 Hs.8102 NM_001023 ENSG00000008988 RPS20 S20 ribosomal protein S20 protein-coding 7837 chr12 123671039 123671166 + 0 NA promoter-TSS (NM_001143850) promoter-TSS (NM_001143850) -11 NM_001143850 79867 Hs.167165 NM_024809 ENSG00000168778 TCTN2 C12orf38|JBTS24|MKS8|TECT2 tectonic family member 2 protein-coding 436 chr1 26865333 26865387 + 0 NA TTS (NM_006142) TTS (NM_006142) 2218 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 14434 chr19 39031588 39031610 + 0 NA intron (NM_178820, intron 2 of 5) intron (NM_178820, intron 2 of 5) 997 NM_178820 126433 Hs.187461 NM_178820 ENSG00000161243 FBXO27 FBG5|Fbx27 F-box protein 27 protein-coding 6424 chr12 55070 55174 + 0 NA Intergenic Intergenic -11761 NM_001170738 440073 Hs.536319 NM_015232 ENSG00000120645 IQSEC3 - IQ motif and Sec7 domain 3 protein-coding 213 chr1 15788322 15788451 + 0 NA Intergenic AluSq2|SINE|Alu 19313 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 17119 chr2 219254158 219254174 + 0 NA promoter-TSS (NM_006000) promoter-TSS (NM_006000) -220 NM_006000 7277 Hs.75318 NM_006000 ENSG00000127824 TUBA4A ALS22|H2-ALPHA|TUBA1 tubulin alpha 4a protein-coding 12772 chr17 58352247 58352288 + 0 NA promoter-TSS (NM_003168) promoter-TSS (NM_003168) -29 NR_073470 6827 Hs.439481 NM_003168 ENSG00000213246 SUPT4H1 SPT4|SPT4H|SUPT4H|Supt4a SPT4 homolog, DSIF elongation factor subunit protein-coding 23892 chr6 2989571 2989675 + 0 NA non-coding (NR_026856, exon 2 of 3) non-coding (NR_026856, exon 2 of 3) 1656 NR_026856 401232 Hs.720158 NM_207495 LINC01011 - long intergenic non-protein coding RNA 1011 ncRNA 5597 chr11 69675275 69675456 + 0 NA promoter-TSS (NM_153451) promoter-TSS (NM_153451) 32 NM_153451 220064 Hs.667996 NM_153451 ENSG00000149716 ORAOV1 TAOS1 oral cancer overexpressed 1 protein-coding 1450 chr1 108559892 108559996 + 0 NA promoter-TSS (NM_001010883) promoter-TSS (NM_001010883) -405 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 3011 chr1 235328234 235328395 + 0 NA promoter-TSS (NM_001206794) promoter-TSS (NM_001206794) -95 NR_135074 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 19657 chr3 71258135 71258239 + 0 NA intron (NM_001012505, intron 5 of 6) L2c|LINE|L2 -13022 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 23179 chr5 130515129 130515291 + 0 NA Intergenic L1P4a|LINE|L1 610380 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 17991 chr20 38860508 38860612 + 0 NA intron (NM_015568, intron 2 of 10) MLT1J2|LTR|ERVL-MaLR 54867 NM_001172735 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 3250 chr10 6275323 6275473 + 0 NA Intergenic Intergenic -51146 NR_040079 399715 NR_040079 ENSG00000215244 LOC399715 - uncharacterized LOC399715 ncRNA 2411 chr1 202380205 202380357 + 0 NA intron (NM_001331029, intron 1 of 24) intron (NM_001331029, intron 1 of 24) 31579 NM_001167858 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 1129 chr1 75092203 75092330 + 0 NA Intergenic MER61C|LTR|ERV1 -36168 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 1143 chr1 77759827 77759929 + 0 NA promoter-TSS (NM_201624) promoter-TSS (NM_201624) 1 NM_015017 23032 Hs.480597 NM_015017 ENSG00000077254 USP33 VDU1 ubiquitin specific peptidase 33 protein-coding 6964 chr12 49088323 49088425 + 0 NA 3' UTR (NM_021044, exon 3 of 3) 3' UTR (NM_021044, exon 3 of 3) 6445 NM_021044 50846 Hs.524382 NM_021044 ENSG00000139549 DHH GDXYM|HHG-3|SRXY7 desert hedgehog protein-coding 2848 chr1 226109927 226110031 + 0 NA Intergenic CpG 47252 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 26909 chr7 121083208 121083312 + 0 NA intron (NM_001105533, intron 4 of 17) intron (NM_001105533, intron 4 of 17) 93869 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 6802 chr12 28026853 28026935 + 0 NA Intergenic MamGypLTR1c|LTR|Gypsy -54911 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 27574 chr8 26243959 26244063 + 0 NA Intergenic Intergenic -47480 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2 regulatory subunit Balpha protein-coding 386 chr1 24848124 24848274 + 0 NA Intergenic CpG 71217 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 1961 chr1 162988013 162988117 + 0 NA Intergenic Intergenic -80541 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G-protein signaling 4 protein-coding 23258 chr5 134738391 134738540 + 0 NA promoter-TSS (NM_001745) promoter-TSS (NM_001745) -15 NM_001745 819 Hs.529846 NM_001745 ENSG00000164615 CAMLG CAML|GET2 calcium modulating ligand protein-coding 6256 chr11 123590667 123590754 + 0 NA intron (NM_001330396, intron 4 of 19) intron (NM_001330396, intron 4 of 19) 30448 NM_001286564 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 30325 chr9 133486409 133486559 + 0 NA Intergenic Intergenic -7330 NM_001145099 11182 Hs.244378 NM_017585 ENSG00000160326 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 member 6 protein-coding 21361 chr4 52659346 52659450 + 0 NA promoter-TSS (NM_001286767) promoter-TSS (NM_001286767) -8 NR_125363 643783 Hs.631514 NR_125363 ENSG00000248866 USP46-AS1 - USP46 antisense RNA 1 ncRNA 1457 chr1 108828295 108828399 + 0 NA intron (NM_152763, intron 10 of 15) intron (NM_152763, intron 10 of 15) 28757 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 5155 chr11 35166785 35166878 + 0 NA intron (NM_001202556, intron 1 of 7) intron (NM_001202556, intron 1 of 7) 27961 NM_001202556 960 Hs.502328 NM_000610 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 15869 chr2 81658309 81658337 + 0 NA Intergenic LTR10F|LTR|ERV1 -191377 NR_110161 100507201 Hs.98589 NR_110161 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 24821 chr6 79463882 79463986 + 0 NA Intergenic L3|LINE|CR1 73496 NM_181714 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 LCA5, lebercilin protein-coding 13734 chr18 67011041 67011146 + 0 NA Intergenic Intergenic -70491 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 11843 chr16 89383135 89383239 + 0 NA intron (NR_045839, intron 2 of 9) intron (NR_045839, intron 2 of 9) -47731 NR_110931 101927817 Hs.667942 NR_110931 LOC101927817 - uncharacterized LOC101927817 ncRNA 21758 chr4 121711672 121711790 + 0 NA Intergenic Intergenic -14739 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 2970 chr1 233543758 233543862 + 0 NA Intergenic Intergenic -70194 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 11318 chr16 49408062 49408103 + 0 NA Intergenic (TCCCCT)n|Simple_repeat|Simple_repeat 34274 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 161 chr1 10900252 10900377 + 0 NA Intergenic Intergenic 81723 NM_001170754 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 30626 chrX 40735740 40735870 + 0 NA promoter-TSS (NM_004229) promoter-TSS (NM_004229) -253 NM_004229 9282 Hs.407604 NM_004229 ENSG00000180182 MED14 CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170 mediator complex subunit 14 protein-coding 27280 chr7 156949625 156949751 + 0 NA promoter-TSS (NM_138400) promoter-TSS (NM_138400) -35 NM_138400 64434 Hs.15825 NM_138400 ENSG00000146909 NOM1 C7orf3|PPP1R113|SGD1 nucleolar protein with MIF4G domain 1 protein-coding 25052 chr6 116387495 116387567 + 0 NA intron (NM_013352, intron 1 of 5) intron (NM_013352, intron 1 of 5) 16661 NM_001322941 29940 Hs.458358 NM_013352 ENSG00000111817 DSE DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 20207 chr3 134666612 134666716 + 0 NA Intergenic Intergenic -15642 NM_178554 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 6168 chr11 118740992 118741095 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 49905 NM_001257191 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 8490 chr13 98840289 98840393 + 0 NA intron (NM_015296, intron 38 of 55) intron (NM_015296, intron 38 of 55) 8257 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 10080 chr15 50765341 50765445 + 0 NA intron (NM_032802, intron 1 of 14) CpG 320 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 28738 chr8 134581178 134581282 + 0 NA intron (NR_110323, intron 10 of 16) intron (NR_110323, intron 10 of 16) -16841 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 26185 chr7 44986556 44986740 + 0 NA promoter-TSS (NR_003697) promoter-TSS (NR_003697) 12 NR_003697 285958 Hs.25892 NR_003697 ENSG00000232956 SNHG15 C7orf40|Linc-Myo1g|MYO1GUT small nucleolar RNA host gene 15 ncRNA 26802 chr7 107891058 107891211 + 0 NA promoter-TSS (NM_000108) promoter-TSS (NM_000108) 27 NM_000108 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 17363 chr2 238285929 238286033 + 0 NA intron (NM_022817, intron 1 of 22) intron (NM_022817, intron 1 of 22) 2585 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 13388 chr18 31241993 31242136 + 0 NA Intergenic Intergenic -76025 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 13134 chr17 81666594 81666594 + 0 NA promoter-TSS (NR_130939) promoter-TSS (NR_130939) 43 NM_001039842 339229 Hs.405942 NM_001039842 ENSG00000204237 OXLD1 C17orf90 oxidoreductase like domain containing 1 protein-coding 14724 chr19 50658194 50658336 + 0 NA TTS (NM_016148) TTS (NM_016148) 8820 NM_001195076 342918 Hs.531650 NM_001195076 ENSG00000235034 C19orf81 - chromosome 19 open reading frame 81 protein-coding 20192 chr3 134250904 134251009 + 0 NA promoter-TSS (NM_002958) promoter-TSS (NM_002958) -212 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor-like tyrosine kinase protein-coding 15860 chr2 75833532 75833636 + 0 NA Intergenic Intergenic -122599 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 4526 chr10 122063269 122063402 + 0 NA intron (NM_206861, intron 3 of 19) intron (NM_206861, intron 3 of 19) -49704 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 23071 chr5 116492142 116492246 + 0 NA intron (NM_020796, intron 6 of 18) intron (NM_020796, intron 6 of 18) 44696 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 19379 chr3 39147204 39147289 + 0 NA 5' UTR (NM_001320559, exon 1 of 5) 5' UTR (NM_001320559, exon 1 of 5) 184 NM_001320559 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 7395 chr12 89526016 89526120 + 0 NA promoter-TSS (NM_001199777) promoter-TSS (NM_001199777) 194 NM_001199781 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 - POC1B-GALNT4 readthrough protein-coding 11684 chr16 78105646 78105750 + 0 NA intron (NR_120436, intron 1 of 5) intron (NR_120436, intron 1 of 5) 6285 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 20802 chr3 183765562 183765607 + 0 NA intron (NM_018023, intron 15 of 30) intron (NM_018023, intron 15 of 30) 60021 NM_024871 79929 Hs.478465 NM_024871 ENSG00000180834 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 15426 chr2 42810445 42810544 + 0 NA Intergenic CpG -17883 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 5051 chr11 27674085 27674189 + 0 NA exon (NM_001143810, exon 2 of 3) exon (NM_001143810, exon 2 of 3) -14488 NM_170735 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 27360 chr8 8917835 8917844 + 0 NA Intergenic Intergenic -24218 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1 malignant fibrous histiocytoma amplified sequence 1 protein-coding 27109 chr7 140062916 140062937 + 0 NA non-coding (NR_130117, exon 1 of 11) non-coding (NR_130117, exon 1 of 11) 795 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 16648 chr2 171434517 171434670 + 0 NA promoter-TSS (NM_001321154) promoter-TSS (NM_001321154) 210 NM_001321158 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 8974 chr14 50321224 50321418 + 0 NA intron (NR_033761, intron 2 of 5) MIR3|SINE|MIR 8992 NR_033761 27109 Hs.438489 NM_015684 ENSG00000125375 ATP5S ATPW|FB|HSU79253 ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) protein-coding 30314 chr9 133238477 133238580 + 0 NA Intergenic Intergenic -29278 NR_110243 29989 Hs.449629 NM_014581 ENSG00000171102 OBP2B LCN14|OBPIIb odorant binding protein 2B protein-coding 28207 chr8 93991586 93991690 + 0 NA Intergenic Intergenic 74587 NM_001161781 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 17948 chr20 36472946 36473050 + 0 NA intron (NM_183006, intron 1 of 6) intron (NM_183006, intron 1 of 6) 11215 NM_183006 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 11270 chr16 31664839 31664943 + 0 NA Intergenic HERVK14-int|LTR|ERVK -35722 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 9766 chr14_GL000225v1_random 1237 1341 + 0 NA NA Intergenic NA NA 20259 chr3 139329381 139329615 + 0 NA Intergenic Intergenic -14521 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 30941 chrX 107717070 107717132 + 0 NA promoter-TSS (NM_001015881) promoter-TSS (NM_001015881) -40 NM_004089 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 24525 chr6 40997715 40997819 + 0 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 25513 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 17761 chr20 22762638 22762793 + 0 NA Intergenic Intergenic -155198 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 13322 chr18 23453781 23453866 + 0 NA intron (NM_003831, intron 1 of 12) intron (NM_003831, intron 1 of 12) 1000 NM_003831 8780 Hs.445511 NM_003831 ENSG00000101782 RIOK3 SUDD RIO kinase 3 protein-coding 30668 chrX 47233421 47233581 + 0 NA intron (NM_004651, intron 1 of 20) CpG 586 NM_004651 8237 Hs.171501 NM_004651 ENSG00000102226 USP11 UHX1 ubiquitin specific peptidase 11 protein-coding 15280 chr2 29114078 29114182 + 0 NA promoter-TSS (NR_109844) promoter-TSS (NR_109844) -748 NR_109844 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 7467 chr12 96198226 96198330 + 0 NA intron (NM_005230, intron 1 of 4) FLAM_A|SINE|Alu 3896 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ELK3, ETS transcription factor protein-coding 4454 chr10 118522923 118523053 + 0 NA Intergenic MER58A|DNA|hAT-Charlie 72660 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 5282 chr11 57778560 57778691 + 0 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 16863 NM_001085467 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 7631 chr12 109582016 109582138 + 0 NA intron (NM_001114185, intron 5 of 10) intron (NM_001114185, intron 5 of 10) 8382 NM_001114185 4598 Hs.130607 NM_000431 ENSG00000110921 MVK LRBP|MK|MVLK|POROK3 mevalonate kinase protein-coding 26162 chr7 44044550 44044707 + 0 NA promoter-TSS (NM_001014436) promoter-TSS (NM_001014436) -12 NM_014063 28988 Hs.436500 NM_014063 ENSG00000136279 DBNL ABP1|HIP-55|HIP55|SH3P7 drebrin like protein-coding 4787 chr11 8964229 8964240 + 0 NA promoter-TSS (NR_073431) promoter-TSS (NR_073431) -441 NR_073431 493900 Hs.591981 NR_073431 ENSG00000254860 TMEM9B-AS1 C11orf18 TMEM9B antisense RNA 1 ncRNA 3153 chr1 247857063 247857199 + 0 NA promoter-TSS (NM_015431) promoter-TSS (NM_015431) -68 NM_015431 25893 Hs.269151 NM_015431 ENSG00000162722 TRIM58 BIA2 tripartite motif containing 58 protein-coding 12926 chr17 71424240 71424363 + 0 NA Intergenic Intergenic -222122 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 13217 chr18 3246159 3246220 + 0 NA Intergenic Intergenic -1293 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 19833 chr3 108159968 108160054 + 0 NA TTS (NM_018010) TTS (NM_018010) 34190 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 911 chr1 54887216 54887258 + 0 NA promoter-TSS (NM_014762) promoter-TSS (NM_014762) 11 NM_014762 1718 Hs.498727 NM_014762 ENSG00000116133 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 8589 chr13 109265006 109265125 + 0 NA Intergenic LTR9A1|LTR|ERV1 -97762 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 22503 chr5 51860823 51860927 + 0 NA Intergenic Intergenic -477543 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 11897 chr17 1628857 1628859 + 0 NA promoter-TSS (NM_001284498) promoter-TSS (NM_001284498) 28 NM_152346 124935 Hs.160550 NM_152346 ENSG00000167703 SLC43A2 LAT4 solute carrier family 43 member 2 protein-coding 6253 chr11 123454449 123454498 + 0 NA Intergenic Intergenic -55406 NM_001330396 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 25654 chr7 7416187 7416291 + 0 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 119590 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 17086 chr2 216682402 216682418 + 0 NA intron (NM_000599, intron 1 of 3) L3b|LINE|CR1 13139 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 7523 chr12 100988086 100988119 + 0 NA intron (NM_001286616, intron 7 of 26) intron (NM_001286616, intron 7 of 26) 86456 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 28512 chr8 119223238 119223342 + 0 NA intron (NM_052886, intron 2 of 3) MIR|SINE|MIR 14919 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding 19276 chr3 25789925 25790079 + 0 NA promoter-TSS (NM_001145294) promoter-TSS (NM_001145294) 37 NM_001145294 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 28108 chr8 82023565 82023669 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR -181331 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 16268 chr2 127107248 127107400 + 0 NA promoter-TSS (NM_001320641) promoter-TSS (NM_001320641) 3 NM_139343 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 23461 chr5 148372461 148372565 + 0 NA intron (NR_105057, intron 2 of 4) L2a|LINE|L2 11337 NR_105057 102546294 Hs.660461 NR_105057 ENSG00000247199 LOC102546294 - uncharacterized LOC102546294 ncRNA 2965 chr1 233113174 233113215 + 0 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 162352 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 31135 chrX 149631808 149631912 + 0 NA promoter-TSS (NM_001174092) promoter-TSS (NM_001174092) 52 NM_001174092 84548 Hs.522172 NM_032508 ENSG00000269556 TMEM185A CXorf13|FAM11A|FRAXF|ee3 transmembrane protein 185A protein-coding 8871 chr14 35535302 35535464 + 0 NA exon (NM_032594, exon 1 of 1) exon (NM_032594, exon 1 of 1) 1341 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 18535 chr21 38831638 38831752 + 0 NA Intergenic Intergenic -25844 NR_109926 101928398 Hs.122403 NR_109926 LOC101928398 - uncharacterized LOC101928398 ncRNA 9794 chr15 26082373 26082504 + 0 NA Intergenic CpG -33375 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 4907 chr11 15769334 15769438 + 0 NA Intergenic Intergenic 125501 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 5058 chr11 28108360 28108464 + 0 NA promoter-TSS (NM_031217) promoter-TSS (NM_031217) 161 NM_001297775 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 8803 chr14 31937865 31938055 + 0 NA Intergenic Intergenic 138739 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 9267 chr14 68468762 68468866 + 0 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 159973 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 24030 chr6 10760107 10760211 + 0 NA TTS (NM_001286489) TTS (NM_001286489) 12400 NR_104454 81853 Hs.95600 NM_030969 ENSG00000137210 TMEM14B - transmembrane protein 14B protein-coding 14337 chr19 31254297 31254441 + 0 NA intron (NR_138036, intron 1 of 4) intron (NR_138036, intron 1 of 4) 95156 NR_138034 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 27513 chr8 22597559 22597656 + 0 NA 3' UTR (NM_176871, exon 10 of 10) 3' UTR (NM_176871, exon 10 of 10) -1994 NM_173686 541565 Hs.743508 NM_173686 ENSG00000241852 C8orf58 - chromosome 8 open reading frame 58 protein-coding 9455 chr14 80425744 80425905 + 0 NA intron (NR_038355, intron 8 of 8) Tigger7|DNA|TcMar-Tigger -194770 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 15136 chr2 20098394 20098424 + 0 NA Intergenic Intergenic -46381 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 8497 chr13 99151030 99151170 + 0 NA Intergenic Intergenic -49325 NM_001144072 337867 Hs.508545 NM_177967 ENSG00000134882 UBAC2 PHGDHL1 UBA domain containing 2 protein-coding 6285 chr11 125514484 125514603 + 0 NA Intergenic PRIMA4_LTR|LTR|ERV1 -18233 NM_022549 9638 Hs.224008 NM_005103 ENSG00000149557 FEZ1 UNC-76 fasciculation and elongation protein zeta 1 protein-coding 29601 chr9 95038314 95038345 + 0 NA intron (NM_001193329, intron 12 of 15) intron (NM_001193329, intron 12 of 15) -27021 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 21422 chr4 68369558 68369786 + 0 NA Intergenic AluJr|SINE|Alu -19555 NM_001031732 91746 Hs.175955 NM_133370 ENSG00000083896 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 8439 chr13 90867479 90867583 + 0 NA Intergenic Intergenic 59066 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 12725 chr17 55526516 55526622 + 0 NA Intergenic Intergenic -104589 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 11137 chr16 23423552 23423662 + 0 NA intron (NM_153603, intron 7 of 16) intron (NM_153603, intron 7 of 16) 29584 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 12389 chr17 36534858 36535017 + 0 NA 5' UTR (NM_001163735, exon 1 of 26) 5' UTR (NM_001163735, exon 1 of 26) 175 NM_001346755 284098 Hs.378885 NM_178517 ENSG00000277161 PIGW Gwt1|HPMRS5 phosphatidylinositol glycan anchor biosynthesis class W protein-coding 22614 chr5 61768826 61768930 + 0 NA Intergenic L2c|LINE|L2 -33180 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 28133 chr8 85858539 85858643 + 0 NA Intergenic Intergenic -30649 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 26902 chr7 120055399 120055541 + 0 NA Intergenic HERV3-int|LTR|ERV1 -148095 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LVCAT5 - liver cancer-associated transcript 5 ncRNA 29285 chr9 76316196 76316300 + 0 NA intron (NM_001190482, intron 29 of 36) MER77B|LTR|ERVL 78280 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 22112 chr4 185426195 185426299 + 0 NA promoter-TSS (NR_028085) promoter-TSS (NR_028085) -262 NM_018359 55325 Hs.713548 NM_018359 ENSG00000109775 UFSP2 BHD|C4orf20 UFM1 specific peptidase 2 protein-coding 30090 chr9 124712046 124712134 + 0 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) 18380 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 11194 chr16 29765552 29765651 + 0 NA Intergenic Intergenic -12639 NM_152338 653808 Hs.632195 NM_152338 ENSG00000174992 ZG16 JCLN|JCLN1|ZG16A zymogen granule protein 16 protein-coding 25346 chr6 151452042 151452146 + 0 NA promoter-TSS (NM_001271937) promoter-TSS (NM_001271937) 87 NM_017909 55005 Hs.486835 NM_017909 ENSG00000155906 RMND1 C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3 required for meiotic nuclear division 1 homolog protein-coding 4915 chr11 16154089 16154193 + 0 NA intron (NM_001145811, intron 6 of 14) intron (NM_001145811, intron 6 of 14) -184520 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 15537 chr2 53311854 53311958 + 0 NA Intergenic LTR88b|LTR|Gypsy? -455877 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 - ChaC cation transport regulator homolog 2 protein-coding 23357 chr5 140691329 140691497 + 0 NA promoter-TSS (NM_001278731) promoter-TSS (NM_001278731) -13 NM_001278731 23438 Hs.432560 NM_012208 ENSG00000112855 HARS2 HARSL|HARSR|HO3|PRLTS2 histidyl-tRNA synthetase 2, mitochondrial protein-coding 19381 chr3 39180855 39180855 + 0 NA Intergenic CpG 11731 NM_194293 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 10829 chr15 101579927 101580031 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR 72412 NM_078474 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 13346 chr18 26090822 26090961 + 0 NA promoter-TSS (NM_001007559) promoter-TSS (NM_001007559) -244 NM_005637 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18, nBAF chromatin remodeling complex subunit protein-coding 14051 chr19 9584509 9584613 + 0 NA promoter-TSS (NM_001308269) promoter-TSS (NM_001308269) -28 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 14290 chr19 19320461 19320614 + 0 NA promoter-TSS (NM_172231) promoter-TSS (NM_172231) -25 NM_172231 57794 Hs.515274 NM_021164 ENSG00000105705 SUGP1 F23858|RBP|SF4 SURP and G-patch domain containing 1 protein-coding 15816 chr2 74010384 74010521 + 0 NA intron (NM_001287491, intron 2 of 10) intron (NM_001287491, intron 2 of 10) 24048 NM_001287491 200424 Hs.516107 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 8488 chr13 98650495 98650646 + 0 NA Intergenic Intergenic -73419 NM_001032296 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 9936 chr15 40782759 40782857 + 0 NA intron (NM_018163, intron 1 of 10) intron (NM_018163, intron 1 of 10) 12847 NM_001130448 643338 Hs.631715 NM_001130448 ENSG00000188277 C15orf62 - chromosome 15 open reading frame 62 protein-coding 26494 chr7 80883652 80883704 + 0 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 35673 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 4771 chr11 7906286 7906404 + 0 NA promoter-TSS (NR_036678) promoter-TSS (NR_036678) -390 NR_036678 283299 Hs.501825 NM_001190788 ENSG00000254951 LOC283299 - uncharacterized LOC283299 ncRNA 1330 chr1 94101334 94101438 + 0 NA intron (NM_000350, intron 5 of 49) intron (NM_000350, intron 5 of 49) 19763 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 30331 chr9 134068000 134068104 + 0 NA promoter-TSS (NM_007371) promoter-TSS (NM_007371) -33 NM_007371 8019 Hs.522472 NM_007371 ENSG00000169925 BRD3 ORFX|RING3L bromodomain containing 3 protein-coding 9495 chr14 86673513 86673617 + 0 NA Intergenic L2a|LINE|L2 -232213 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 13185 chr17 82874637 82874751 + 0 NA intron (NM_005993, intron 14 of 38) intron (NM_005993, intron 14 of 38) -34639 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 27287 chr7 157336890 157337043 + 0 NA promoter-TSS (NM_005494) promoter-TSS (NM_005494) -50 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 24090 chr6 14744092 14744240 + 0 NA Intergenic Intergenic -458712 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 5604 chr11 70080908 70081012 + 0 NA intron (NM_018043, intron 1 of 25) intron (NM_018043, intron 1 of 25) 2658 NM_018043 55107 Hs.503074 NM_018043 ENSG00000131620 ANO1 DOG1|ORAOV2|TAOS2|TMEM16A anoctamin 1 protein-coding 4935 chr11 16925824 16925928 + 0 NA intron (NM_001329631, intron 3 of 22) intron (NM_001329631, intron 3 of 22) 88540 NM_001329630 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 3526 chr10 31582847 31582996 + 0 NA Intergenic Intergenic 261300 NM_001323675 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 9123 chr14 60151870 60151974 + 0 NA intron (NM_001322282, intron 3 of 5) intron (NM_001322282, intron 3 of 5) 13571 NM_001322282 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 21608 chr4 98929131 98929294 + 0 NA promoter-TSS (NM_001130678) promoter-TSS (NM_001130678) -120 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 10354 chr15 69160326 69160362 + 0 NA promoter-TSS (NM_001324093) promoter-TSS (NM_001324093) -253 NM_015554 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 11237 chr16 30698033 30698151 + 0 NA intron (NR_144637, intron 1 of 1) CpG 397 NM_001256932 730183 Hs.535456 NM_001256932 LOC730183 - uncharacterized LOC730183 protein-coding 9920 chr15 40160923 40161017 + 0 NA promoter-TSS (NM_001211) promoter-TSS (NM_001211) -39 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 12982 chr17 74873260 74873387 + 0 NA promoter-TSS (NM_001258012) promoter-TSS (NM_001258012) -292 NR_047576 2232 Hs.69745 NM_004110 ENSG00000161513 FDXR ADXR ferredoxin reductase protein-coding 19782 chr3 102053446 102053580 + 0 NA Intergenic Intergenic -110192 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 21191 chr4 13921016 13921180 + 0 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) -190870 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 6833 chr12 31729219 31729322 + 0 NA promoter-TSS (NM_001113402) promoter-TSS (NM_001113402) -96 NM_001278412 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 25816 chr7 21011285 21011405 + 0 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 175914 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 21405 chr4 61425502 61425591 + 0 NA intron (NM_015236, intron 2 of 24) HERVL18-int|LTR|ERVL 224290 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 14968 chr2 9555931 9555935 + 0 NA promoter-TSS (NM_003183) promoter-TSS (NM_003183) -113 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 30524 chrX 15790371 15790492 + 0 NA promoter-TSS (NM_005089) promoter-TSS (NM_005089) -20 NM_005089 8233 Hs.171909 NM_005089 ENSG00000169249 ZRSR2 U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 protein-coding 5005 chr11 20631641 20631745 + 0 NA intron (NM_004211, intron 10 of 15) intron (NM_004211, intron 10 of 15) 32293 NM_004211 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 26076 chr7 38170021 38170141 + 0 NA Intergenic Intergenic -8125 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 10357 chr15 69452688 69452850 + 0 NA promoter-TSS (NM_001003) promoter-TSS (NM_001003) -51 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 29771 chr9 107249264 107249413 + 0 NA Intergenic Intergenic -33898 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 10894 chr16 2673475 2673616 + 0 NA promoter-TSS (NR_040023) promoter-TSS (NR_040023) -106 NR_040023 100507321 Hs.406976 NM_001012731 ERVK13-1 - endogenous retrovirus group K13 member 1 ncRNA 19241 chr3 20064593 20064697 + 0 NA intron (NM_003884, intron 1 of 17) MIRc|SINE|MIR 24613 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 18103 chr20 45881101 45881258 + 0 NA promoter-TSS (NM_080603) promoter-TSS (NM_080603) -30 NM_080603 90204 Hs.517075 NM_080603 ENSG00000168612 ZSWIM1 C20orf162 zinc finger SWIM-type containing 1 protein-coding 11363 chr16 53704006 53704016 + 0 NA promoter-TSS (NM_001127897) promoter-TSS (NM_001127897) 48 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO, alpha-ketoglutarate dependent dioxygenase protein-coding 1770 chr1 153658560 153658667 + 0 NA promoter-TSS (NM_012437) promoter-TSS (NM_012437) -41 NM_012437 23557 Hs.32018 NM_012437 ENSG00000143553 SNAPIN BLOC1S7|BLOS7|BORCS3|SNAPAP SNAP associated protein protein-coding 15978 chr2 96740083 96740187 + 0 NA promoter-TSS (NM_001322351) promoter-TSS (NM_001322351) -43 NM_001322354 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 28901 chr9 5450459 5450517 + 0 NA promoter-TSS (NM_001314029) promoter-TSS (NM_001314029) -15 NR_052005 29126 Hs.521989 NM_014143 ENSG00000120217 CD274 B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1 CD274 molecule protein-coding 5458 chr11 65096590 65096717 + 0 NA intron (NR_073519, intron 1 of 9) intron (NR_073519, intron 1 of 9) 538 NM_013265 738 Hs.277517 NM_013265 ENSG00000149823 VPS51 ANG2|ANG3|C11orf2|C11orf3|FFR VPS51, GARP complex subunit protein-coding 5622 chr11 72070034 72070138 + 0 NA intron (NM_001286561, intron 1 of 26) intron (NM_001286561, intron 1 of 26) 2216 NR_036123 100422953 NR_036123 ENSG00000263742 MIR3165 mir-3165 microRNA 3165 ncRNA 12854 chr17 64707376 64707480 + 0 NA Intergenic Intergenic -45160 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 7077 chr12 53863093 53863172 + 0 NA Intergenic Intergenic -75660 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 21972 chr4 164440245 164440372 + 0 NA Intergenic Intergenic -57053 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 16566 chr2 162318976 162318991 + 0 NA promoter-TSS (NM_022168) promoter-TSS (NM_022168) 1 NM_001330267 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 25196 chr6 136792400 136792447 + 0 NA promoter-TSS (NM_005923) promoter-TSS (NM_005923) 95 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 11785 chr16 85152837 85152918 + 0 NA Intergenic Intergenic 15727 NR_033984 400548 Hs.592054 NR_033984 ENSG00000278214 LINC02139 - long intergenic non-protein coding RNA 2139 ncRNA 23234 chr5 134018586 134018748 + 0 NA Intergenic MER77B|LTR|ERVL -13534 NM_003374 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 7714 chr12 117853720 117853824 + 0 NA intron (NM_173598, intron 3 of 19) MamGypLTR3a|LTR|Gypsy 114451 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 11214 chr16 30370779 30370883 + 0 NA promoter-TSS (NM_015527) promoter-TSS (NM_015527) -103 NM_001324459 29895 Hs.50889 NM_013292 ENSG00000180209 MYLPF HUMMLC2B|MLC2B|MRLC2|MYL11 myosin light chain, phosphorylatable, fast skeletal muscle protein-coding 30913 chrX 105314654 105314817 + 0 NA intron (NM_017416, intron 5 of 10) L4_A_Mam|LINE|RTE-X -94042 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 15247 chr2 27754204 27754323 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -17454 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 5620 chr11 71928897 71929047 + 0 NA promoter-TSS (NR_029192) promoter-TSS (NR_029192) 250 NR_024147 55298 Hs.368554 NM_018320 ENSG00000137522 RNF121 - ring finger protein 121 protein-coding 11827 chr16 87945761 87945909 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -5597 NM_001173540 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 7185 chr12 59041682 59041869 + 0 NA Intergenic Intergenic -121237 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 4505 chr10 121104671 121104775 + 0 NA Intergenic Intergenic -253544 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 15403 chr2 39642529 39642633 + 0 NA Intergenic Intergenic -22917 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 3319 chr10 14602129 14602233 + 0 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) 2237 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 8854 chr14 35046241 35046391 + 0 NA promoter-TSS (NM_001289022) promoter-TSS (NM_001289022) 63 NM_001289022 283635 Hs.446357 NM_173607 ENSG00000151327 FAM177A1 C14orf24 family with sequence similarity 177 member A1 protein-coding 14512 chr19 43798752 43798883 + 0 NA exon (NM_001288763, exon 2 of 4) exon (NM_001288763, exon 2 of 4) 1212 NM_001288763 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 20970 chr3 191775929 191776033 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 314818 NM_001083308 152138 Hs.690618 NM_001083308 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 7444 chr12 93742444 93742590 + 0 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) -4694 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 2219 chr1 184051606 184051745 + 0 NA promoter-TSS (NR_125335) promoter-TSS (NR_125335) 24 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 5482 chr11 65507652 65507758 + 0 NA Intergenic Intergenic 1588 NR_144569 109136578 NR_144569 MASCRNA - MALAT1-associated small cytoplasmic RNA scRNA 8917 chr14 39114202 39114362 + 0 NA promoter-TSS (NM_003616) promoter-TSS (NM_003616) -2 NM_001009182 8487 Hs.652307 NM_003616 ENSG00000092208 GEMIN2 SIP1|SIP1-delta gem nuclear organelle associated protein 2 protein-coding 11826 chr16 87854490 87854594 + 0 NA intron (NM_003486, intron 1 of 9) intron (NM_003486, intron 1 of 9) 14957 NM_003486 8140 Hs.513797 NM_003486 ENSG00000103257 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16 solute carrier family 7 member 5 protein-coding 14123 chr19 11639654 11639793 + 0 NA Intergenic CpG 27366 NR_002944 664709 Hs.534822 NR_002944 HNRNPA1P10 HNRPA1L-2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo 1077 chr1 67713475 67713579 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 28350 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 10448 chr15 74771142 74771254 + 0 NA Intergenic Intergenic -10886 NM_004383 1445 Hs.77793 NM_004383 ENSG00000103653 CSK - c-src tyrosine kinase protein-coding 6178 chr11 118997977 118998078 + 0 NA promoter-TSS (NR_104049) promoter-TSS (NR_104049) -106 NM_198489 338657 Hs.534613 NM_198489 ENSG00000186166 CCDC84 DLNB14 coiled-coil domain containing 84 protein-coding 28286 chr8 100018119 100018223 + 0 NA intron (NM_015668, intron 14 of 27) intron (NM_015668, intron 14 of 27) 5913 NR_031675 100302165 NR_031675 ENSG00000221753 MIR1273A MIR1273|MIRN1273|hsa-mir-1273|hsa-mir-1273a microRNA 1273a ncRNA 25871 chr7 24379326 24379430 + 0 NA Intergenic LTR1D1|LTR|ERV1 95190 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 26669 chr7 99143035 99143139 + 0 NA intron (NM_001199847, intron 1 of 17) intron (NM_001199847, intron 1 of 17) 1033 NM_020429 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 967 chr1 59814564 59814686 + 0 NA promoter-TSS (NM_015888) promoter-TSS (NM_015888) -236 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 9289 chr14 69611365 69611456 + 0 NA promoter-TSS (NM_014734) promoter-TSS (NM_014734) -183 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 9853 chr15 34318799 34318903 + 0 NA promoter-TSS (NM_005135) promoter-TSS (NM_005135) -31 NM_005135 9990 Hs.510939 NM_005135 ENSG00000140199 SLC12A6 ACCPN|KCC3|KCC3A|KCC3B solute carrier family 12 member 6 protein-coding 322 chr1 21614892 21614993 + 0 NA intron (NM_001145658, intron 7 of 24) intron (NM_001145658, intron 7 of 24) 36913 NM_001145658 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 15545 chr2 53786955 53786967 + 0 NA promoter-TSS (NM_015701) promoter-TSS (NM_015701) 30 NM_001127398 27248 Hs.438336 NM_015701 ENSG00000068912 ERLEC1 C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB endoplasmic reticulum lectin 1 protein-coding 24573 chr6 42890874 42890980 + 0 NA promoter-TSS (NM_001008739) promoter-TSS (NM_001008739) -111 NM_001008739 441150 Hs.571098 NM_001008739 ENSG00000221821 C6orf226 - chromosome 6 open reading frame 226 protein-coding 22375 chr5 36079372 36079476 + 0 NA Intergenic L1PA17|LINE|L1 -12503 NM_174914 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 23915 chr6 3823229 3823377 + 0 NA Intergenic Intergenic -26063 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 21844 chr4 141853522 141853629 + 0 NA Intergenic MER68|LTR|ERVL 216979 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 6689 chr12 15801949 15802103 + 0 NA Intergenic Intergenic -12450 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 14387 chr19 36115304 36115446 + 0 NA promoter-TSS (NM_006233) promoter-TSS (NM_006233) -71 NM_006233 5438 Hs.47062 NM_006233 ENSG00000105258 POLR2I RPB9|hRPB14.5 RNA polymerase II subunit I protein-coding 27840 chr8 53734968 53735101 + 0 NA intron (NM_015941, intron 13 of 13) HERVE_a-int|LTR|ERV1 108008 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 17883 chr20 33731943 33732049 + 0 NA non-coding (NR_104259, exon 1 of 14) non-coding (NR_104259, exon 1 of 14) 236 NM_001282935 84905 Hs.516989 NM_032819 ENSG00000131061 ZNF341 - zinc finger protein 341 protein-coding 13046 chr17 76641724 76641851 + 0 NA intron (NM_001289107, intron 1 of 9) L1ME3G|LINE|L1 2051 NM_018414 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 15062 chr2 14629017 14629121 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -3614 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 FAM84A NSE1|PP11517 family with sequence similarity 84 member A protein-coding 19430 chr3 44761580 44761731 + 0 NA promoter-TSS (NM_001320334) promoter-TSS (NM_001320334) 26 NM_020696 57456 Hs.744955 NM_020696 ENSG00000163807 KIAA1143 - KIAA1143 protein-coding 4101 chr10 94007296 94007424 + 0 NA intron (NM_016341, intron 1 of 32) intron (NM_016341, intron 1 of 32) 13371 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 28075 chr8 80029873 80030025 + 0 NA intron (NM_014018, intron 1 of 2) CpG 322 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 3850 chr10 71349577 71349681 + 0 NA intron (NM_018344, intron 3 of 5) MLT1K|LTR|ERVL-MaLR 30376 NM_018344 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 24515 chr6 39185318 39185444 + 0 NA Intergenic Intergenic 44094 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 10956 chr16 4616256 4616414 + 0 NA Intergenic CpG-9218 -1409 NM_145253 124402 Hs.513313 NM_145253 ENSG00000153443 UBALD1 FAM100A|PP11303 UBA like domain containing 1 protein-coding 11890 chr17 1187226 1187353 + 0 NA promoter-TSS (NM_001159746) promoter-TSS (NM_001159746) 33 NM_001159746 29 Hs.159306 NM_001092 ENSG00000159842 ABR MDB active BCR-related protein-coding 13331 chr18 23828578 23828736 + 0 NA intron (NM_001127717, intron 23 of 73) AmnSINE1|SINE|5S-Deu-L2 -44363 NM_001127718 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 25559 chr7 2631734 2631838 + 0 NA promoter-TSS (NM_025250) promoter-TSS (NM_025250) -183 NM_025250 80727 Hs.440899 NM_025250 ENSG00000136295 TTYH3 - tweety family member 3 protein-coding 24538 chr6 41767289 41767384 + 0 NA Intergenic MIR3|SINE|MIR 12569 NM_006653 10817 Hs.194208 NM_006653 ENSG00000137218 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 24531 chr6 41320627 41320789 + 0 NA Intergenic LTR18C|LTR|ERVL -15082 NM_004828 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 21908 chr4 152310291 152310395 + 0 NA Intergenic Intergenic -27312 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 pseudo 18334 chr20 58692680 58692717 + 0 NA promoter-TSS (NM_024663) promoter-TSS (NM_024663) -108 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase-like 1 protein-coding 16293 chr2 128028225 128028271 + 0 NA promoter-TSS (NM_001145928) promoter-TSS (NM_001145928) -128 NM_001330303 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 24945 chr6 99520938 99521071 + 0 NA promoter-TSS (NM_001195131) promoter-TSS (NM_001195131) 10 NM_001195131 100130890 Hs.634506 NM_001195131 ENSG00000228439 TSTD3 - thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 protein-coding 960 chr1 59375360 59375459 + 0 NA intron (NR_103473, intron 5 of 16) intron (NR_103473, intron 5 of 16) 65331 NM_001244714 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 24225 chr6 26199394 26199499 + 0 NA promoter-TSS (NM_021065) promoter-TSS (NM_021065) -113 NM_003522 8343 Hs.182137 NM_003522 ENSG00000277224 HIST1H2BF H2B/g|H2BFG histone cluster 1 H2B family member f protein-coding 818 chr1 46247562 46247690 + 0 NA promoter-TSS (NM_003579) promoter-TSS (NM_003579) -69 NM_001142548 8438 Hs.642042 NM_003579 ENSG00000085999 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54-like (S. cerevisiae) protein-coding 13161 chr17 82273681 82273785 + 0 NA promoter-TSS (NR_110578) promoter-TSS (NR_110578) 9 NR_110578 1453 Hs.631725 NM_001893 ENSG00000141551 CSNK1D ASPS|CKIdelta|FASPS2|HCKID casein kinase 1 delta protein-coding 13511 chr18 46333550 46333654 + 0 NA promoter-TSS (NR_046357) promoter-TSS (NR_046357) -622 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 9660 chr14 99613088 99613192 + 0 NA intron (NM_001329411, intron 1 of 8) intron (NM_001329411, intron 1 of 8) 8643 NM_001329411 84439 Hs.131714 NM_032425 ENSG00000182218 HHIPL1 KIAA1822|UNQ9245 HHIP like 1 protein-coding 22372 chr5 35884167 35884271 + 0 NA Intergenic L2c|LINE|L2 27344 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 10410 chr15 72203495 72203654 + 0 NA intron (NM_001206796, intron 9 of 11) intron (NM_001206796, intron 9 of 11) -5779 NM_001012642 196996 Hs.596332 NM_001012642 ENSG00000175318 GRAMD2 - GRAM domain containing 2 protein-coding 16665 chr2 172555823 172555927 + 0 NA promoter-TSS (NM_001278549) promoter-TSS (NM_001278549) -94 NR_103729 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 12613 chr17 47896055 47896160 + 0 NA promoter-TSS (NM_003110) promoter-TSS (NM_003110) -43 NM_003110 6668 Hs.514276 NM_003110 ENSG00000167182 SP2 - Sp2 transcription factor protein-coding 25509 chr6 170584643 170584764 + 0 NA promoter-TSS (NM_001199464) promoter-TSS (NM_001199464) -11 NM_001199461 5134 Hs.367900 NM_002598 ENSG00000071994 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 9516 chr14 88824376 88824389 + 0 NA intron (NM_198310, intron 1 of 13) intron (NM_198310, intron 1 of 13) 229 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 29265 chr9 75171023 75171068 + 0 NA Intergenic MER72|LTR|ERV1 82563 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 23483 chr5 149357833 149358004 + 0 NA promoter-TSS (NR_132366) promoter-TSS (NR_132366) -89 NM_024028 78991 Hs.644397 NM_024028 ENSG00000145882 PCYOX1L - prenylcysteine oxidase 1 like protein-coding 21945 chr4 158210503 158210607 + 0 NA 5' UTR (NM_018342, exon 1 of 13) 5' UTR (NM_018342, exon 1 of 13) 306 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 29183 chr9 71588101 71588205 + 0 NA Intergenic MIRc|SINE|MIR 180731 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 20223 chr3 136862008 136862126 + 0 NA promoter-TSS (NM_001291999) promoter-TSS (NM_001291999) -4 NR_110176 101927597 Hs.559587 NR_110175 NCK1-AS1 SLC35G2-AS1 NCK1 antisense RNA 1 (head to head) ncRNA 16736 chr2 178450792 178450859 + 0 NA promoter-TSS (NM_001139518) promoter-TSS (NM_001139518) -68 NM_001139517 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 20969 chr3 191484623 191484733 + 0 NA intron (NR_120606, intron 1 of 6) L1MA3|LINE|L1 23515 NM_001083308 152138 Hs.690618 NM_001083308 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 7070 chr12 53625990 53626162 + 0 NA promoter-TSS (NM_001206683) promoter-TSS (NM_001206683) -80 NM_001206683 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 26854 chr7 115097450 115097554 + 0 NA intron (NR_120521, intron 1 of 3) ERVL-E-int|LTR|ERVL 18544 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 14593 chr19 46263006 46263221 + 0 NA Intergenic Intergenic 33361 NM_198541 374918 Hs.546554 NM_198541 ENSG00000188293 IGFL1 APRG644|UNQ644 IGF like family member 1 protein-coding 24099 chr6 15691421 15691575 + 0 NA Intergenic Intergenic -28440 NM_001271669 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 21037 chr3 195850924 195851070 + 0 NA intron (NR_134939, intron 1 of 1) intron (NR_134939, intron 1 of 1) 3231 NR_134940 101929697 Hs.551750 NR_134939 LINC01983 - long intergenic non-protein coding RNA 1983 ncRNA 21761 chr4 121823954 121824048 + 0 NA promoter-TSS (NM_001237) promoter-TSS (NM_001237) 0 NM_001237 890 Hs.58974 NM_001237 ENSG00000145386 CCNA2 CCN1|CCNA cyclin A2 protein-coding 20519 chr3 158718580 158718708 + 0 NA intron (NM_002888, intron 1 of 3) L1M5|LINE|L1 13842 NM_002888 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 25352 chr6 151917017 151917026 + 0 NA intron (NM_001122740, intron 4 of 8) intron (NM_001122740, intron 4 of 8) 107914 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 6124 chr11 116367208 116367312 + 0 NA Intergenic Intergenic -272162 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 30661 chrX 46836746 46836870 + 0 NA promoter-TSS (NM_006915) promoter-TSS (NM_006915) -104 NM_006915 6102 Hs.44766 NM_006915 ENSG00000102218 RP2 DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2 retinitis pigmentosa 2 (X-linked recessive) protein-coding 18002 chr20 40287178 40287292 + 0 NA Intergenic Intergenic 282774 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 30169 chr9 128098264 128098468 + 0 NA promoter-TSS (NM_052901) promoter-TSS (NM_052901) -116 NR_049766 114789 Hs.5476 NM_052901 ENSG00000148339 SLC25A25 MCSC|PCSCL|SCAMC-2 solute carrier family 25 member 25 protein-coding 19697 chr3 87227624 87227786 + 0 NA intron (NM_001244644, intron 1 of 4) intron (NM_001244644, intron 1 of 4) 442 NM_001244644 25978 Hs.476930 NM_014043 ENSG00000083937 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 11080 chr16 19067475 19067653 + 0 NA promoter-TSS (NR_119382) promoter-TSS (NR_119382) -31 NM_016138 10229 Hs.157113 NM_016138 ENSG00000167186 COQ7 CAT5|CLK-1|CLK1|COQ10D8 coenzyme Q7, hydroxylase protein-coding 6581 chr12 9509877 9510046 + 0 NA Intergenic Intergenic -61789 NR_033399 440081 Hs.447869 NM_004400 DDX12P CHLR2|DDX12 DEAD/H-box helicase 12, pseudogene pseudo 24164 chr6 20212451 20212649 + 0 NA promoter-TSS (NM_001080480) promoter-TSS (NM_001080480) -86 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 16248 chr2 121737102 121737236 + 0 NA promoter-TSS (NM_032390) promoter-TSS (NM_032390) -242 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 28325 chr8 101087824 101087995 + 0 NA Intergenic Intergenic 35855 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 12424 chr17 38799443 38799547 + 0 NA TTS (NM_017748) TTS (NM_017748) 410 NM_003559 8396 Hs.260603 NM_003559 ENSG00000276293 PIP4K2B PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB phosphatidylinositol-5-phosphate 4-kinase type 2 beta protein-coding 18857 chr22 36776332 36776474 + 0 NA promoter-TSS (NM_001177701) promoter-TSS (NM_001177701) -270 NR_033531 11020 Hs.415172 NM_006860 ENSG00000100360 IFT27 BBS19|RABL4|RAYL intraflagellar transport 27 protein-coding 12073 chr17 8190286 8190390 + 0 NA promoter-TSS (NM_017622) promoter-TSS (NM_017622) -92 NM_017622 54785 Hs.129563 NM_017622 ENSG00000196544 BORCS6 C17orf59|PRO2472 BLOC-1 related complex subunit 6 protein-coding 14310 chr19 21020528 21020680 + 0 NA promoter-TSS (NM_001172671) promoter-TSS (NM_001172671) -16 NM_025189 80264 Hs.729202 NM_025189 ENSG00000118620 ZNF430 - zinc finger protein 430 protein-coding 15601 chr2 58601063 58601167 + 0 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 80362 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 10156 chr15 56568885 56568989 + 0 NA Intergenic L1PB1|LINE|L1 -103800 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 10395 chr15 71329655 71329759 + 0 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -140648 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 21768 chr4 123396706 123396810 + 0 NA promoter-TSS (NM_001258038) promoter-TSS (NM_001258038) -37 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 2818 chr1 224565255 224565418 + 0 NA intron (NR_136295, intron 2 of 7) intron (NR_136295, intron 2 of 7) -51141 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 26593 chr7 92590172 92590174 + 0 NA promoter-TSS (NM_001288584) promoter-TSS (NM_001288584) -103 NM_001288584 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 20349 chr3 147699211 147699289 + 0 NA Intergenic Intergenic 277923 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 891 chr1 53945990 53946081 + 0 NA promoter-TSS (NR_133632) promoter-TSS (NR_133632) -212 NM_016126 51668 Hs.525462 NM_016126 ENSG00000081870 HSPB11 C1orf41|HSPCO34|IFT25|PP25 heat shock protein family B (small) member 11 protein-coding 31209 chrY 10999834 10999986 + 0 NA Intergenic Intergenic 1089112 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 2106 chr1 176207569 176207714 + 0 NA promoter-TSS (NM_022457) promoter-TSS (NM_022457) -397 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 RFWD2 COP1|RNF200 ring finger and WD repeat domain 2 protein-coding 18706 chr22 24894618 24894722 + 0 NA intron (NM_001098497, intron 17 of 24) MLT1H|LTR|ERVL-MaLR 44677 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 24407 chr6 33249254 33249358 + 0 NA promoter-TSS (NR_044997).7 promoter-TSS (NR_044997).7 -230 NR_044997 414765 Hs.675862 NR_044997 ENSG00000232940 HCG25 dJ1033B10.16 HLA complex group 25 (non-protein coding) ncRNA 24276 chr6 28281491 28281594 + 0 NA promoter-TSS (NM_001184743) promoter-TSS (NM_001184743) 5 NM_032507 84547 Hs.144527 NM_032507 ENSG00000137338 PGBD1 HUCEP-4|SCAND4|dJ874C20.4 piggyBac transposable element derived 1 protein-coding 22278 chr5 16894570 16894710 + 0 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 41636 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 17811 chr20 25195632 25195736 + 0 NA promoter-TSS (NM_001317941) promoter-TSS (NM_001317941) 14 NM_001322383 955 Hs.500375 NM_001247 ENSG00000197586 ENTPD6 CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3 ectonucleoside triphosphate diphosphohydrolase 6 (putative) protein-coding 9607 chr14 95157483 95157666 + 0 NA promoter-TSS (NM_177438) promoter-TSS (NM_177438) -114 NR_015415 400242 Hs.497573 NM_207443 ENSG00000235706 DICER1-AS1 DICER1-AS DICER1 antisense RNA 1 ncRNA 16080 chr2 106192869 106192894 + 0 NA intron (NR_045607, intron 1 of 13) MIR|SINE|MIR 1458 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 22873 chr5 91162832 91162984 + 0 NA intron (NM_032119, intron 89 of 89) intron (NM_032119, intron 89 of 89) 151494 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 22491 chr5 50441203 50441397 + 0 NA promoter-TSS (NM_198449) promoter-TSS (NM_198449) 100 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 10927 chr16 3443511 3443628 + 0 NA promoter-TSS (NM_001317093) promoter-TSS (NM_001317093) -32 NM_152457 146434 Hs.88630 NM_152457 ENSG00000167981 ZNF597 HIT-4 zinc finger protein 597 protein-coding 13820 chr18 79679375 79679508 + 0 NA promoter-TSS (NM_001318511) promoter-TSS (NM_001318511) 304 NR_136643 284241 NR_136643 ENSG00000178412 LOC284241 - uncharacterized LOC284241 ncRNA 19182 chr3 13480081 13480261 + 0 NA promoter-TSS (NR_046690) promoter-TSS (NR_046690) 6 NM_001330636 79885 Hs.744132 NM_024827 ENSG00000163517 HDAC11 HD11 histone deacetylase 11 protein-coding 7538 chr12 102062020 102062188 + 0 NA promoter-TSS (NM_001301107) promoter-TSS (NM_001301107) 20 NM_001301107 51019 Hs.405692 NM_016053 ENSG00000120860 WASHC3 CCDC53|CGI-116 WASH complex subunit 3 protein-coding 28692 chr8 130692243 130692347 + 0 NA Intergenic L1P4d|LINE|L1 -248635 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 10034 chr15 45864022 45864104 + 0 NA intron (NR_135680, intron 2 of 4) MLT1F1|LTR|ERVL-MaLR 158868 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 8247 chr13 48401012 48401116 + 0 NA intron (NM_000321, intron 17 of 26) intron (NM_000321, intron 17 of 26) 12453 NM_001162498 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 21584 chr4 90546371 90546394 + 0 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 311351 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1738 chr1 152167941 152168076 + 0 NA Intergenic Intergenic -8780 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 10322 chr15 66932207 66932242 + 0 NA intron (NR_135687, intron 2 of 2) intron (NR_135687, intron 2 of 2) 24291 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 10834 chr16 53610 53781 + 0 NA promoter-TSS (NM_016310) promoter-TSS (NM_016310) -63 NM_016310 51728 Hs.632223 NM_016310 ENSG00000161980 POLR3K C11|C11-RNP3|My010|RPC10|RPC11|RPC12.5 RNA polymerase III subunit K protein-coding 13944 chr19 4342740 4342844 + 0 NA promoter-TSS (NM_001159846) promoter-TSS (NM_001159846) -735 NM_001300862 84954 Hs.321689 NM_032868 ENSG00000008382 MPND - MPN domain containing protein-coding 23109 chr5 123036763 123036908 + 0 NA promoter-TSS (NM_000943) promoter-TSS (NM_000943) -105 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 3920 chr10 75202808 75202912 + 0 NA Intergenic MER115|DNA|hAT-Tip100 -7294 NM_001184783 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 21658 chr4 105022978 105023082 + 0 NA Intergenic L1MA1|LINE|L1 -122845 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 20656 chr3 171961064 171961168 + 0 NA Intergenic Intergenic -60376 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 5842 chr11 92707262 92707366 + 0 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 208314 NR_135091 105369431 Hs.532389 NR_135091 LOC105369431 - uncharacterized LOC105369431 ncRNA 8513 chr13 101306918 101307022 + 0 NA intron (NM_052867, intron 7 of 43) intron (NM_052867, intron 7 of 43) 109492 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 12367 chr17 35312777 35312881 + 0 NA Intergenic L1PA15-16|LINE|L1 60872 NM_001104589 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 29169 chr9 70602553 70602695 + 0 NA intron (NM_001007471, intron 19 of 24) intron (NM_001007471, intron 19 of 24) -187967 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 6645 chr12 13171965 13172135 + 0 NA Intergenic Intergenic -24618 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 11227 chr16 30558501 30558626 + 0 NA promoter-TSS (NM_001172679) promoter-TSS (NM_001172679) -242 NM_001172679 92595 Hs.132227 NM_033410 ENSG00000169951 ZNF764 - zinc finger protein 764 protein-coding 511 chr1 30824471 30824605 + 0 NA Intergenic CpG -66702 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 13625 chr18 57210417 57210537 + 0 NA Intergenic Intergenic 63415 NM_001257964 284257 Hs.127882 NM_001257964 ENSG00000228075 BOD1L2 BOD1P|FAM44C biorientation of chromosomes in cell division 1 like 2 protein-coding 13861 chr19 1383422 1383562 + 0 NA promoter-TSS (NM_024407) promoter-TSS (NM_024407) -392 NM_024407 374291 Hs.211914 NM_024407 ENSG00000115286 NDUFS7 CI-20|CI-20KD|MY017|PSST NADH:ubiquinone oxidoreductase core subunit S7 protein-coding 2367 chr1 201311848 201311972 + 0 NA intron (NM_001005337, intron 2 of 13) intron (NM_001005337, intron 2 of 13) 28458 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 29307 chr9 77589521 77589689 + 0 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 58711 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 20252 chr3 138877460 138877548 + 0 NA Intergenic Intergenic 66516 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 15930 chr2 86563384 86563538 + 0 NA promoter-TSS (NM_016079) promoter-TSS (NM_016079) 36 NM_001005753 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 17296 chr2 233350841 233350887 + 0 NA Intergenic Intergenic -3643 NM_152879 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 2689 chr1 216448045 216448149 + 0 NA Intergenic Intergenic -24701 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 3765 chr10 62661230 62661413 + 0 NA intron (NM_199452, intron 5 of 6) intron (NM_199452, intron 5 of 6) 140873 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 9106 chr14 59028654 59028758 + 0 NA Intergenic Intergenic -159957 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 19086 chr3 4825044 4825119 + 0 NA intron (NM_002222, intron 56 of 57) intron (NM_002222, intron 56 of 57) -73491 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 17729 chr20 19975164 19975268 + 0 NA exon (NM_001242581, exon 8 of 12) exon (NM_001242581, exon 8 of 12) -42074 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 27506 chr8 22352820 22352924 + 0 NA intron (NM_001330480, intron 20 of 21) intron (NM_001330480, intron 20 of 21) -14377 NM_001135154 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 10769 chr15 95799969 95800050 + 0 NA Intergenic Intergenic 366916 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 10785 chr15 98144508 98144554 + 0 NA Intergenic LTR16C|LTR|ERVL -55778 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 11855 chr16 89700390 89700494 + 0 NA intron (NM_152339, intron 2 of 2) intron (NM_152339, intron 2 of 2) 1271 NM_152339 124044 Hs.374556 NM_152339 ENSG00000158792 SPATA2L C16orf76|tamo spermatogenesis associated 2 like protein-coding 15665 chr2 64653844 64653948 + 0 NA promoter-TSS (NM_014755) promoter-TSS (NM_014755) 16 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2 SERTA domain containing 2 protein-coding 10325 chr15 67049806 67049808 + 0 NA intron (NR_135686, intron 2 of 5) intron (NR_135686, intron 2 of 5) 14375 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 12328 chr17 32444363 32444512 + 0 NA promoter-TSS (NM_001270482) promoter-TSS (NM_001270482) -26 NM_002815 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 25142 chr6 128656227 128656301 + 0 NA Intergenic Intergenic -135590 NM_001291984 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type K protein-coding 17964 chr20 37295656 37295760 + 0 NA intron (NM_001003897, intron 1 of 2) MIRb|SINE|MIR 6060 NM_022077 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 13886 chr19 2089273 2089383 + 0 NA intron (NM_130807, intron 1 of 4) MIRc|SINE|MIR 6942 NM_130807 126308 Hs.744938 NM_130807 ENSG00000172081 MOB3A MOB-LAK|MOB1C|MOBKL2A|moblak MOB kinase activator 3A protein-coding 18942 chr22 40856600 40856731 + 0 NA promoter-TSS (NM_001204827) promoter-TSS (NM_001204827) 343 NM_003932 6767 Hs.712713 NM_003932 ENSG00000100380 ST13 AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) protein-coding 5648 chr11 73570485 73570702 + 0 NA intron (NM_015159, intron 1 of 7) AluJb|SINE|Alu 27596 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 16151 chr2 112624505 112624664 + 0 NA Intergenic Intergenic 19596 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 3066 chr1 240783806 240783875 + 0 NA intron (NM_001282778, intron 16 of 16) intron (NM_001282778, intron 16 of 16) -171678 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 31169 chrX 153599373 153599477 + 0 NA promoter-TSS (NR_131982) promoter-TSS (NR_131982) 85 NR_131982 105373383 Hs.547831 NR_131982 ENSG00000260081 LOC105373383 - uncharacterized LOC105373383 ncRNA 1948 chr1 162207378 162207482 + 0 NA intron (NM_014697, intron 2 of 9) MIRb|SINE|MIR 50323 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 10808 chr15 100342064 100342168 + 0 NA promoter-TSS (NM_139057) promoter-TSS (NM_139057) -111 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 - ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 27029 chr7 132065792 132065827 + 0 NA Intergenic Intergenic 155589 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 29102 chr9 38084039 38084143 + 0 NA Intergenic Intergenic -14878 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 12343 chr17 33674737 33674841 + 0 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -141029 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 27762 chr8 43093879 43094004 + 0 NA intron (NM_032237, intron 1 of 4) AluJb|SINE|Alu 435 NM_032237 84197 Hs.491646 NM_032237 ENSG00000185900 POMK MDDGA12|MDDGC12|SGK196 protein-O-mannose kinase protein-coding 10115 chr15 52261888 52261974 + 0 NA intron (NM_018728, intron 9 of 40) intron (NM_018728, intron 9 of 40) 15269 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 24053 chr6 12348745 12348855 + 0 NA Intergenic L2b|LINE|L2 58504 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 4402 chr10 114519398 114519483 + 0 NA intron (NM_001003407, intron 6 of 21) intron (NM_001003407, intron 6 of 21) 7486 NM_006720 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 17179 chr2 224038605 224038734 + 0 NA promoter-TSS (NM_001136530) promoter-TSS (NM_001136530) -29 NM_001136530 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 12033 chr17 7315296 7315448 + 0 NA promoter-TSS (NM_004489) promoter-TSS (NM_004489) -33 NM_004489 2874 Hs.438219 NM_004489 ENSG00000132522 GPS2 AMF-1 G protein pathway suppressor 2 protein-coding 19150 chr3 10189728 10189803 + 0 NA intron (NM_001570, intron 2 of 12) intron (NM_001570, intron 2 of 12) 24886 NM_001570 3656 Hs.449207 NM_001570 ENSG00000134070 IRAK2 IRAK-2 interleukin 1 receptor associated kinase 2 protein-coding 10237 chr15 62076037 62076166 + 0 NA Intergenic L5|LINE|RTE-X 9124 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 23521 chr5 150517770 150517874 + 0 NA intron (NM_001543, intron 1 of 14) intron (NM_001543, intron 1 of 14) 9710 NM_001543 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 23808 chr5 178627055 178627169 + 0 NA promoter-TSS (NM_020666) promoter-TSS (NM_020666) -59 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 5107 chr11 33015786 33015959 + 0 NA promoter-TSS (NM_001077242) promoter-TSS (NM_001077242) 8 NM_001077242 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 30745 chrX 53684416 53684427 + 0 NA intron (NM_031407, intron 2 of 83) CpG 2308 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding 5298 chr11 58659535 58659680 + 0 NA Intergenic MER77|LTR|ERVL 36934 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 8533 chr13 102845913 102846017 + 0 NA 5' UTR (NM_000123, exon 1 of 15) 5' UTR (NM_000123, exon 1 of 15) 124 NM_000123 2073 Hs.258429 NM_000123 ENSG00000134899 ERCC5 COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC ERCC excision repair 5, endonuclease protein-coding 27853 chr8 54171859 54171963 + 0 NA Intergenic Intergenic 36690 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 2596 chr1 210584530 210584634 + 0 NA intron (NM_001122834, intron 9 of 11) intron (NM_001122834, intron 9 of 11) 255286 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 2943 chr1 231422221 231422330 + 0 NA 5' UTR (NM_022051, exon 1 of 5) 5' UTR (NM_022051, exon 1 of 5) 2769 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 21297 chr4 38664049 38664153 + 0 NA promoter-TSS (NM_016531) promoter-TSS (NM_016531) -68 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 14315 chr19 23274195 23274339 + 0 NA promoter-TSS (NR_103741) promoter-TSS (NR_103741) -16 NR_103742 100132815 Hs.629249 NR_103741 IPO5P1 - importin 5 pseudogene 1 pseudo 20233 chr3 137866999 137867103 + 0 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 95140 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 25632 chr7 6453859 6453954 + 0 NA Intergenic MER77|LTR|ERVL -5894 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 24355 chr6 31197626 31197693 + 0 NA promoter-TSS (NR_026791) promoter-TSS (NR_026791) -101 NR_026791 253018 Hs.659818 NR_026791 ENSG00000206344 HCG27 bCX101P6.9|bPG299F13.9|bQB115I13.2 HLA complex group 27 (non-protein coding) ncRNA 30163 chr9 127991165 127991291 + 0 NA Intergenic Intergenic -10695 NM_001035254 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 27388 chr8 11284401 11284544 + 0 NA promoter-TSS (NM_015458) promoter-TSS (NM_015458) -19 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 25532 chr7 1028938 1029042 + 0 NA promoter-TSS (NR_134537) promoter-TSS (NR_134537) -558 NR_134537 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 23387 chr5 142013119 142013212 + 0 NA promoter-TSS (NM_005471) promoter-TSS (NM_005471) -110 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 2512 chr1 206905435 206905539 + 0 NA intron (NM_005449, intron 7 of 7) intron (NM_005449, intron 7 of 7) 8044 NM_006850 11009 Hs.58831 NM_006850 ENSG00000162892 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 29641 chr9 97059796 97059876 + 0 NA Intergenic Intergenic -20193 NM_001201575 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 18161 chr20 49583658 49583777 + 0 NA Intergenic Intergenic -15547 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 16445 chr2 149038578 149038682 + 0 NA 5' UTR (NM_001317006, exon 1 of 5) 5' UTR (NM_001317006, exon 1 of 5) 163 NM_001317003 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 15999 chr2 98730828 98730932 + 0 NA intron (NM_012214, intron 1 of 15) CpG 246 NM_012214 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A protein-coding 1286 chr1 90504626 90504730 + 0 NA Intergenic Intergenic 212559 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 4744 chr11 6353436 6353583 + 0 NA Intergenic Intergenic -32999 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 9786 chr15 22838422 22838522 + 0 NA promoter-TSS (NM_001008860) promoter-TSS (NM_001008860) -169 NM_001184889 81614 Hs.591003 NM_030922 ENSG00000140157 NIPA2 - non imprinted in Prader-Willi/Angelman syndrome 2 protein-coding 24612 chr6 44246989 44247127 + 0 NA promoter-TSS (NM_007355) promoter-TSS (NM_007355) 100 NM_007355 3326 Hs.509736 NM_007355 ENSG00000096384 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90 alpha family class B member 1 protein-coding 6680 chr12 15155386 15155490 + 0 NA TTS (NR_046559) TTS (NR_046559) 3515 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 20170 chr3 132722441 132722591 + 0 NA promoter-TSS (NR_037804) promoter-TSS (NR_037804) -57 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 - NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 13686 chr18 61952435 61952544 + 0 NA Intergenic Intergenic -59418 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 15155 chr2 20510081 20510185 + 0 NA Intergenic Intergenic 63062 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 2638 chr1 212596425 212596538 + 0 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) -12147 NM_001674 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 28937 chr9 14322585 14322712 + 0 NA intron (NM_001190738, intron 1 of 8) CpG -8602 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 355 chr1 23593086 23593180 + 0 NA Intergenic Intergenic -33339 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 11368 chr16 53864923 53865027 + 0 NA intron (NM_001080432, intron 4 of 8) intron (NM_001080432, intron 4 of 8) 161012 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO, alpha-ketoglutarate dependent dioxygenase protein-coding 553 chr1 32494364 32494454 + 0 NA Intergenic Intergenic 29352 NM_001145720 728116 Hs.647658 NM_001145720 ENSG00000273274 ZBTB8B ZNF916B zinc finger and BTB domain containing 8B protein-coding 22745 chr5 76372671 76372775 + 0 NA Intergenic Intergenic -30532 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 16378 chr2 137256136 137256271 + 0 NA intron (NM_001316349, intron 10 of 27) L2b|LINE|L2 490641 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 27153 chr7 142885709 142885847 + 0 NA promoter-TSS (NM_018646) promoter-TSS (NM_018646) -33 NM_018646 55503 Hs.302740 NM_014274 ENSG00000165125 TRPV6 ABP/ZF|CAT1|CATL|ECAC2|HSA277909|LP6728|ZFAB transient receptor potential cation channel subfamily V member 6 protein-coding 3546 chr10 32962142 32962243 + 0 NA Intergenic Intergenic -3827 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 13677 chr18 60892983 60893124 + 0 NA Intergenic AluJb|SINE|Alu -440529 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 8811 chr14 32255044 32255148 + 0 NA Intergenic Intergenic -51827 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 12245 chr17 27544706 27544810 + 0 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 72748 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 2643 chr1 212665367 212665497 + 0 NA Intergenic Intergenic 34553 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 2877 chr1 227915833 227915925 + 0 NA Intergenic Intergenic 25804 NR_049806 100847072 NR_049806 ENSG00000264483 MIR5008 - microRNA 5008 ncRNA 6508 chr12 6312694 6312798 + 0 NA promoter-TSS (NM_001144857) promoter-TSS (NM_001144857) 95 NM_001144857 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 16559 chr2 162091680 162091771 + 0 NA Intergenic L2c|LINE|L2 -17183 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 5814 chr11 87352871 87353047 + 0 NA Intergenic Intergenic 315115 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 26799 chr7 107563854 107563958 + 0 NA promoter-TSS (NM_001270419) promoter-TSS (NM_001270419) -51 NR_073002 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 28713 chr8 132920803 132920947 + 0 NA intron (NM_003235, intron 21 of 47) MLT1A|LTR|ERVL-MaLR 53915 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 195 chr1 14190631 14190733 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -408035 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 24071 chr6 13575070 13575157 + 0 NA intron (NM_012241, intron 1 of 9) L2a|LINE|L2 486 NM_012241 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 21561 chr4 87522007 87522157 + 0 NA intron (NM_001128310, intron 1 of 11) intron (NM_001128310, intron 1 of 11) 7421 NM_001128310 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 12887 chr17 67421988 67422092 + 0 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) 44759 NM_012417 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 679 chr1 39398716 39398921 + 0 NA intron (NM_012090, intron 52 of 92) intron (NM_012090, intron 52 of 92) -10686 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 17162 chr2 222959483 222959587 + 0 NA Intergenic LTR16A2|LTR|ERVL -92395 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 16093 chr2 108612772 108612876 + 0 NA intron (NM_001193482, intron 1 of 9) intron (NM_001193482, intron 1 of 9) 5663 NM_001193482 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 26010 chr7 33109545 33109649 + 0 NA promoter-TSS (NM_203288) promoter-TSS (NM_203288) -207 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 retinitis pigmentosa 9 (autosomal dominant) protein-coding 7943 chr13 20704235 20704302 + 0 NA exon (NM_138284, exon 2 of 3) exon (NM_138284, exon 2 of 3) 925 NM_138284 53342 Hs.655142 NM_138284 ENSG00000172458 IL17D IL-17D interleukin 17D protein-coding 1241 chr1 87224344 87224448 + 0 NA intron (NM_001290053, intron 2 of 3) intron (NM_001290053, intron 2 of 3) 11727 NM_001290053 101927844 Hs.694591 NM_001290053 LOC101927844 - uncharacterized LOC101927844 protein-coding 23329 chr5 139877272 139877376 + 0 NA intron (NM_013983, intron 3 of 10) intron (NM_013983, intron 3 of 10) 81503 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 647 chr1 37692185 37692371 + 0 NA promoter-TSS (NM_001256875) promoter-TSS (NM_001256875) -123 NM_018101 55143 Hs.524571 NM_018101 ENSG00000134690 CDCA8 BOR|BOREALIN|DasraB|MESRGP cell division cycle associated 8 protein-coding 1441 chr1 107688516 107688640 + 0 NA promoter-TSS (NM_001079874) promoter-TSS (NM_001079874) -74 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 10185 chr15 58793963 58794111 + 0 NA intron (NM_001040450, intron 2 of 8) L2|LINE|L2 22675 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 FAM63B - family with sequence similarity 63 member B protein-coding 13829 chr18 80257903 80258043 + 0 NA Intergenic LTR13|LTR|ERVK -10459 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 4368 chr10 112446855 112446959 + 0 NA promoter-TSS (NM_001303134) promoter-TSS (NM_001303134) 52 NM_022494 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 13979 chr19 5622974 5623094 + 0 NA promoter-TSS (NM_014649) promoter-TSS (NM_014649) -1 NM_001320572 6294 Hs.728802 NM_002967 ENSG00000160633 SAFB HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1 scaffold attachment factor B protein-coding 11104 chr16 20900817 20900911 + 0 NA promoter-TSS (NM_001302835) promoter-TSS (NM_001302835) 198 NM_001128302 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 14854 chr19 57633170 57633272 + 0 NA promoter-TSS (NR_049754) promoter-TSS (NR_049754) 54 NR_049752 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 15903 chr2 85468898 85468927 + 0 NA Intergenic Intergenic 49981 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 26672 chr7 99208164 99208280 + 0 NA promoter-TSS (NM_001145715) promoter-TSS (NM_001145715) -733 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 11655 chr16 75464684 75464833 + 0 NA promoter-TSS (NM_001304997) promoter-TSS (NM_001304997) -21 NM_001304998 124491 Hs.487510 NM_145254 ENSG00000166822 TMEM170A TMEM170 transmembrane protein 170A protein-coding 30686 chrX 48598198 48598245 + 0 NA 5' UTR (NM_001166426, exon 1 of 8) 5' UTR (NM_001166426, exon 1 of 8) 412 NM_001166426 64743 Hs.521973 NM_017883 ENSG00000101940 WDR13 MG21 WD repeat domain 13 protein-coding 14531 chr19 44770689 44770841 + 0 NA Intergenic Intergenic -7104 NM_001130852 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 16063 chr2 105337497 105337568 + 0 NA 5' UTR (NM_001286537, exon 1 of 5) 5' UTR (NM_001286537, exon 1 of 5) 173 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 29483 chr9 88361614 88361718 + 0 NA Intergenic MER21C|LTR|ERVL -26716 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 11782 chr16 85027632 85027684 + 0 NA promoter-TSS (NM_001297766) promoter-TSS (NM_001297766) -93 NM_001286566 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 15947 chr2 88729547 88729651 + 0 NA intron (NM_144563, intron 4 of 8) intron (NM_144563, intron 4 of 8) -36303 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 27537 chr8 23356170 23356311 + 0 NA intron (NM_002318, intron 3 of 13) L3|LINE|CR1 20032 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 26439 chr7 75994543 75994741 + 0 NA promoter-TSS (NM_001317803) promoter-TSS (NM_001317803) 32 NM_001317803 83862 Hs.488835 NM_031925 ENSG00000189077 TMEM120A NET29|TMPIT transmembrane protein 120A protein-coding 21970 chr4 163867033 163867150 + 0 NA intron (NM_001166373, intron 2 of 7) MER77B|LTR|ERVL -253467 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 29786 chr9 107749906 107750010 + 0 NA Intergenic Intergenic -260238 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 15642 chr2 62705319 62705397 + 0 NA promoter-TSS (NM_001142616) promoter-TSS (NM_001142616) -508 NM_015252 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 11166 chr16 25569222 25569326 + 0 NA Intergenic MER61E|LTR|ERV1 -122752 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 21066 chr3 197298110 197298264 + 0 NA promoter-TSS (NR_038289) promoter-TSS (NR_038289) -60 NR_038289 100507086 Hs.636103 NR_038289 ENSG00000227375 DLG1-AS1 - DLG1 antisense RNA 1 ncRNA 6793 chr12 27844540 27844635 + 0 NA Intergenic Intergenic 64333 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 1571 chr1 116115552 116115723 + 0 NA intron (NM_152367, intron 2 of 6) Chap1_Mam|DNA|hAT-Charlie 3882 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 7421 chr12 92145780 92145934 + 0 NA promoter-TSS (NR_135036) promoter-TSS (NR_135036) 40 NM_001731 694 Hs.255935 NM_001731 ENSG00000133639 BTG1 APRO2 BTG anti-proliferation factor 1 protein-coding 13390 chr18 31294469 31294635 + 0 NA Intergenic Intergenic -23537 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 28699 chr8 131341103 131341207 + 0 NA Intergenic Intergenic -300566 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 23875 chr6 1724782 1724928 + 0 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 114409 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 7554 chr12 103859194 103859419 + 0 NA intron (NR_027249, intron 13 of 15) intron (NR_027249, intron 13 of 15) -18109 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 7805 chr12 122500906 122501042 + 0 NA promoter-TSS (NM_017612) promoter-TSS (NM_017612) 99 NM_017612 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 22965 chr5 103850140 103850199 + 0 NA Intergenic Intergenic -287368 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 52 chr1 3453383 3453487 + 0 NA Intergenic Intergenic -1148 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 28686 chr8 130483523 130483627 + 0 NA Intergenic Intergenic -39915 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 8115 chr13 36346730 36346884 + 0 NA promoter-TSS (NM_015087) promoter-TSS (NM_015087) -10 NM_001142295 23111 Hs.440414 NM_015087 ENSG00000133104 SPG20 SPARTIN|TAHCCP1 spastic paraplegia 20 (Troyer syndrome) protein-coding 10468 chr15 75640244 75640360 + 0 NA promoter-TSS (NM_018285) promoter-TSS (NM_018285) 21 NM_018285 55272 Hs.513043 NM_018285 ENSG00000177971 IMP3 BRMS2|C15orf12|MRPS4 IMP3, U3 small nucleolar ribonucleoprotein protein-coding 22984 chr5 107557391 107557537 + 0 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 113431 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 28783 chr8 141346990 141347083 + 0 NA Intergenic Intergenic 6487 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 29817 chr9 109013544 109013617 + 0 NA promoter-TSS (NM_001286974) promoter-TSS (NM_001286974) 14 NM_001286974 8727 Hs.58488 NM_003798 ENSG00000119326 CTNNAL1 ACRP|CLLP|alpha-CATU catenin alpha like 1 protein-coding 27022 chr7 131546195 131546298 + 0 NA intron (NM_001018111, intron 1 of 8) intron (NM_001018111, intron 1 of 8) 10371 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 11162 chr16 25049700 25049846 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -17114 NR_135196 283887 Hs.652665 NR_135196 ENSG00000262155 LOC283887 - uncharacterized LOC283887 ncRNA 13972 chr19 5261295 5261452 + 0 NA intron (NM_002850, intron 6 of 37) intron (NM_002850, intron 6 of 37) 79430 NM_002850 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase, receptor type S protein-coding 27500 chr8 22140884 22141029 + 0 NA intron (NM_025232, intron 1 of 7) intron (NM_025232, intron 1 of 7) 995 NM_001316965 80346 Hs.289063 NM_025232 ENSG00000168476 REEP4 C8orf20|PP432|Yip2c receptor accessory protein 4 protein-coding 20408 chr3 151316859 151316998 + 0 NA promoter-TSS (NM_023915) promoter-TSS (NM_023915) -80 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 FKSG78|GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 19259 chr3 23959450 23959501 + 0 NA intron (NM_001145425, intron 3 of 7) intron (NM_001145425, intron 3 of 7) 13354 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 12754 chr17 57583020 57583124 + 0 NA intron (NM_170721, intron 6 of 9) Charlie7|DNA|hAT-Charlie 25340 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 29170 chr9 70835463 70835567 + 0 NA intron (NM_001007470, intron 5 of 7) intron (NM_001007470, intron 5 of 7) -25431 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 18598 chr21 46635469 46635667 + 0 NA promoter-TSS (NM_001242865) promoter-TSS (NM_001242865) -27 NM_001535 3275 Hs.154163 NM_001535 ENSG00000160310 PRMT2 HRMT1L1 protein arginine methyltransferase 2 protein-coding 12704 chr17 51820320 51820424 + 0 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 338400 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 16587 chr2 164841424 164841572 + 0 NA promoter-TSS (NM_001278461) promoter-TSS (NM_001278461) -80 NM_001278461 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 10748 chr15 93837560 93837664 + 0 NA Intergenic Intergenic -18948 NR_120321 101927153 Hs.371900 NR_120321 LOC101927153 - uncharacterized LOC101927153 ncRNA 20261 chr3 139354086 139354190 + 0 NA intron (NM_020191, intron 6 of 7) intron (NM_020191, intron 6 of 7) 10119 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 23008 chr5 111092237 111092410 + 0 NA exon (NM_139281, exon 1 of 23) exon (NM_139281, exon 1 of 23) 151 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 1641 chr1 145964589 145964729 + 0 NA promoter-TSS (NM_001039888) promoter-TSS (NM_001039888) -23 NM_001330685 84265 Hs.591456 NM_032305 ENSG00000121851 POLR3GL RPC32HOM|flj32422 RNA polymerase III subunit G like protein-coding 7005 chr12 51048107 51048211 + 0 NA promoter-TSS (NM_001243689) promoter-TSS (NM_001243689) -140 NR_045019 25875 Hs.655272 NM_015416 ENSG00000050426 LETMD1 1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2 LETM1 domain containing 1 protein-coding 27464 chr8 18666362 18666512 + 0 NA intron (NM_015310, intron 9 of 15) Tigger1|DNA|TcMar-Tigger 142458 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 15291 chr2 30146495 30146661 + 0 NA promoter-TSS (NM_001127399) promoter-TSS (NM_001127399) -306 NM_001127400 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 16711 chr2 177212458 177212574 + 0 NA promoter-TSS (NR_049831).2 promoter-TSS (NR_049831).2 -178 NM_001330247 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 13791 chr18 76131835 76131946 + 0 NA intron (NR_040034, intron 3 of 5) intron (NR_040034, intron 3 of 5) 8892 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 27817 chr8 52695457 52695592 + 0 NA intron (NM_001083617, intron 1 of 23) MER77|LTR|ERVL 18942 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 18742 chr22 27920138 27920211 + 0 NA promoter-TSS (NR_036170) promoter-TSS (NR_036170) -352 NR_036170 100422998 NR_036170 ENSG00000283225 MIR3199-2 mir-3199-2 microRNA 3199-2 ncRNA 1384 chr1 98662027 98662029 + 0 NA intron (NM_152238, intron 1 of 7) CpG 348 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 16476 chr2 152415303 152415455 + 0 NA intron (NM_052905, intron 1 of 25) MIRc|SINE|MIR 80142 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 16466 chr2 151409787 151409893 + 0 NA promoter-TSS (NM_001177663) promoter-TSS (NM_001177663) -43 NM_018151 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 5205 chr11 44095557 44095734 + 0 NA promoter-TSS (NM_207122) promoter-TSS (NM_207122) 96 NM_207122 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 11919 chr17 2401633 2401737 + 0 NA promoter-TSS (NM_020310) promoter-TSS (NM_020310) -721 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 19236 chr3 20040027 20040094 + 0 NA promoter-TSS (NM_003884) promoter-TSS (NM_003884) 28 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 2068 chr1 171438583 171438687 + 0 NA Intergenic MER5A|DNA|hAT-Charlie -46892 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 17735 chr20 20127928 20128122 + 0 NA intron (NM_001167816, intron 7 of 12) L1PB1|LINE|L1 71379 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 25894 chr7 25855132 25855276 + 0 NA Intergenic Intergenic 94782 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 27998 chr8 70402127 70402258 + 0 NA intron (NM_001321703, intron 1 of 22) CpG 1063 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 10632 chr15 87045890 87045994 + 0 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -57516 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 3440 chr10 24466417 24466521 + 0 NA promoter-TSS (NM_001282770) promoter-TSS (NM_001282770) -36 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 4428 chr10 116947232 116947388 + 0 NA intron (NM_001258300, intron 8 of 17) intron (NM_001258300, intron 8 of 17) 58267 NM_001127211 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 19410 chr3 42476905 42477036 + 0 NA Intergenic Intergenic -12329 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 5835 chr11 91982180 91982284 + 0 NA Intergenic Intergenic -369864 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 18137 chr20 47568204 47568308 + 0 NA intron (NM_006534, intron 1 of 22) intron (NM_006534, intron 1 of 22) 66399 NM_001174088 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 16451 chr2 149587695 149587845 + 0 NA promoter-TSS (NM_015702) promoter-TSS (NM_015702) 46 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria and homocystinuria, cblD type protein-coding 3426 chr10 23696585 23696689 + 0 NA intron (NM_001098500, intron 1 of 18) L2b|LINE|L2 1891 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 26832 chr7 112423056 112423208 + 0 NA promoter-TSS (NM_001007245) promoter-TSS (NM_001007245) -12 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 25604 chr7 5570131 5570330 + 0 NA Intergenic CpG -22575 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 464 chr1 27725772 27725939 + 0 NA promoter-TSS (NM_001143912) promoter-TSS (NM_001143912) -124 NM_152660 199870 Hs.469359 NM_152660 ENSG00000009780 FAM76A - family with sequence similarity 76 member A protein-coding 8374 chr13 76384267 76384371 + 0 NA Intergenic Intergenic 502086 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 19792 chr3 102715478 102715582 + 0 NA Intergenic Intergenic 280515 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 25560 chr7 2758333 2758437 + 0 NA intron (NM_007353, intron 2 of 3) Charlie1|DNA|hAT-Charlie 4755 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 16048 chr2 102100854 102100958 + 0 NA intron (NM_001288706, intron 1 of 11) intron (NM_001288706, intron 1 of 11) -3668 NM_001320980 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 2011 chr1 167161452 167161560 + 0 NA Intergenic MER41B|LTR|ERV1 34299 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 9901 chr15 39172155 39172270 + 0 NA Intergenic Intergenic -78457 NR_144507 400360 Hs.376109 NM_207445 C15orf54 - chromosome 15 open reading frame 54 ncRNA 3452 chr10 24902279 24902286 + 0 NA intron (NM_020200, intron 3 of 8) intron (NM_020200, intron 3 of 8) 50362 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 28769 chr8 140790899 140791040 + 0 NA intron (NM_153831, intron 13 of 31) intron (NM_153831, intron 13 of 31) -58316 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 3867 chr10 72260609 72260713 + 0 NA Intergenic Intergenic -13258 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 8334 chr13 69565599 69565679 + 0 NA Intergenic MER77|LTR|ERVL 343293 NR_125752 103689913 Hs.585628 NR_125752 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 22327 chr5 27308290 27308394 + 0 NA Intergenic ERVL-B4-int|LTR|ERVL -163950 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 LINC01021 - long intergenic non-protein coding RNA 1021 ncRNA 1304 chr1 92030969 92031073 + 0 NA intron (NM_173567, intron 1 of 6) intron (NM_173567, intron 1 of 6) 1045 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 8194 chr13 44218688 44218794 + 0 NA Intergenic L3|LINE|CR1 -22541 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 8523 chr13 102586771 102586875 + 0 NA Intergenic Intergenic -10113 NM_003291 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 7656 chr12 110742853 110742999 + 0 NA promoter-TSS (NM_002710) promoter-TSS (NM_002710) 52 NM_001244974 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 8570 chr13 106649662 106649794 + 0 NA Intergenic Intergenic -4152 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 30328 chr9 133882080 133882184 + 0 NA intron (NM_003371, intron 2 of 26) L2b|LINE|L2 110192 NM_003371 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 9649 chr14 99272088 99272164 + 0 NA promoter-TSS (NM_001282237) promoter-TSS (NM_001282237) -413 NM_001282237 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 11056 chr16 15642711 15642827 + 0 NA promoter-TSS (NM_001143979) promoter-TSS (NM_001143979) 397 NM_014647 9665 Hs.173524 NM_014647 ENSG00000166783 KIAA0430 LKAP|MARF1|PPP1R34 KIAA0430 protein-coding 29420 chr9 85212330 85212434 + 0 NA Intergenic (CACACA)n|Simple_repeat|Simple_repeat 529647 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 30962 chrX 109390864 109390943 + 0 NA intron (NM_001522, intron 14 of 19) intron (NM_001522, intron 14 of 19) 91153 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 12838 chr17 63827336 63827489 + 0 NA promoter-TSS (NM_002805) promoter-TSS (NM_002805) 2 NM_002805 5705 Hs.79387 NM_002805 ENSG00000087191 PSMC5 S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG proteasome 26S subunit, ATPase 5 protein-coding 29855 chr9 110748618 110748722 + 0 NA intron (NM_001166280, intron 8 of 12) intron (NM_001166280, intron 8 of 12) 79899 NM_001166280 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS muscle associated receptor tyrosine kinase protein-coding 24489 chr6 37222788 37222892 + 0 NA intron (NM_001286401, intron 1 of 2) MER52C|LTR|ERV1 34797 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 4381 chr10 113297343 113297447 + 0 NA Intergenic Intergenic 252040 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 2206 chr1 183164439 183164589 + 0 NA Intergenic Intergenic -21525 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 5550 chr11 67310695 67310830 + 0 NA intron (NM_017857, intron 13 of 13) intron (NM_017857, intron 13 of 13) -7077 NR_024469 100130987 Hs.664585 NR_024469 LOC100130987 - uncharacterized LOC100130987 ncRNA 2177 chr1 181469909 181470013 + 0 NA Intergenic Intergenic -13589 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 7330 chr12 80778197 80778323 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 15106 NR_120469 101928420 Hs.739989 NR_120468 ENSG00000257741 LINC01490 - long intergenic non-protein coding RNA 1490 ncRNA 8695 chr14 22269002 22269106 + 0 NA Intergenic MER50B|LTR|ERV1 320183 NM_001344 1603 Hs.82890 NM_001344 ENSG00000129562 DAD1 OST2 defender against cell death 1 protein-coding 15685 chr2 65554935 65554966 + 0 NA Intergenic Intergenic -122428 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 23988 chr6 8083561 8083644 + 0 NA intron (NM_004280, intron 3 of 3) intron (NM_004280, intron 3 of 3) 2931 NR_003703 100124533 NR_003703 SCARNA27 - small Cajal body-specific RNA 27 ncRNA 587 chr1 33349979 33350133 + 0 NA promoter-TSS (NR_125978) promoter-TSS (NR_125978) -158 NM_004427 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 1235 chr1 86833778 86833882 + 0 NA Intergenic Intergenic 80535 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 15689 chr2 65728916 65729048 + 0 NA Intergenic MLT1J1|LTR|ERVL-MaLR -296460 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 3814 chr10 69124000 69124042 + 0 NA promoter-TSS (NM_001318946) promoter-TSS (NM_001318946) -132 NM_001318944 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 95 chr1 6784545 6784690 + 0 NA promoter-TSS (NM_001195563) promoter-TSS (NM_001195563) -707 NM_015215 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 298 chr1 20211625 20211729 + 0 NA Intergenic Intergenic -25191 NR_110078 101928017 Hs.550803 NR_110078 ENSG00000225986 UBXN10-AS1 - UBXN10 antisense RNA 1 ncRNA 8742 chr14 23830179 23830330 + 0 NA Intergenic L2c|LINE|L2 -123481 NM_001282988 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 29943 chr9 114908436 114908461 + 0 NA intron (NM_001252290, intron 2 of 4) intron (NM_001252290, intron 2 of 4) 22147 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 8088 chr13 33218200 33218308 + 0 NA intron (NM_001243476, intron 5 of 17) LTR32|LTR|ERVL -12204 NM_001243474 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 21322 chr4 44146029 44146133 + 0 NA Intergenic Intergenic 129019 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LVCAT1 - liver cancer-associated transcript 1 ncRNA 243 chr1 16913896 16914025 + 0 NA Intergenic CpG -7990 NM_014675 9696 Hs.309403 NM_014675 ENSG00000058453 CROCC ROLT|TAX1BP2 ciliary rootlet coiled-coil, rootletin protein-coding 4731 chr11 5380855 5380985 + 0 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) -8457 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 3835 chr10 70332027 70332107 + 0 NA intron (NR_103467, intron 1 of 2) intron (NR_103467, intron 1 of 2) 44712 NM_001278213 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 27247 chr7 152463892 152464039 + 0 NA promoter-TSS (NR_027387) promoter-TSS (NR_027387) -159 NR_027387 100128822 Hs.647112 NR_027387 ENSG00000261455 LINC01003 - long intergenic non-protein coding RNA 1003 ncRNA 24690 chr6 52503998 52504139 + 0 NA intron (NM_012288, intron 10 of 10) intron (NM_012288, intron 10 of 10) 72996 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 6338 chr11 129375453 129375557 + 0 NA promoter-TSS (NM_003658) promoter-TSS (NM_003658) -481 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 6222 chr11 121466138 121466260 + 0 NA intron (NM_003105, intron 1 of 47) intron (NM_003105, intron 1 of 47) 13996 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 8241 chr13 48009387 48009536 + 0 NA Intergenic L2|LINE|L2 -8135 NM_003850 8803 Hs.743361 NM_003850 ENSG00000136143 SUCLA2 A-BETA|A-SCS|MTDPS5|SCS-betaA succinate-CoA ligase ADP-forming beta subunit protein-coding 19305 chr3 31288787 31288922 + 0 NA Intergenic Intergenic -127067 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 5791 chr11 86183155 86183275 + 0 NA Intergenic L2c|LINE|L2 -61169 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 753 chr1 43256877 43257005 + 0 NA Intergenic Intergenic -13053 NM_144626 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 10920 chr16 3158810 3158914 + 0 NA Intergenic CpG 14571 NR_132322 197350 Hs.434132 NR_132322 ENSG00000228146 CASP16P CASP16 caspase 16, pseudogene pseudo 16231 chr2 120399248 120399426 + 0 NA Intergenic Intergenic 53195 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin beta B subunit protein-coding 16106 chr2 109213880 109213986 + 0 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -72345 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 14297 chr19 19591214 19591316 + 0 NA intron (NR_038198, intron 2 of 7) intron (NR_038198, intron 2 of 7) 27651 NM_025245 80714 Hs.466257 NM_025245 ENSG00000105717 PBX4 - PBX homeobox 4 protein-coding 18146 chr20 48352744 48352802 + 0 NA Intergenic Intergenic -7138 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 11296 chr16 48014914 48015018 + 0 NA Intergenic MIR|SINE|MIR -127836 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 22912 chr5 95878695 95878718 + 0 NA Intergenic Intergenic 26474 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 8293 chr13 52194379 52194526 + 0 NA promoter-TSS (NR_051965) promoter-TSS (NR_051965) 15 NR_051965 100887750 Hs.553878 NR_002816 ENSG00000243406 MRPS31P5 MRPS31P3 mitochondrial ribosomal protein S31 pseudogene 5 pseudo 28427 chr8 109621671 109621775 + 0 NA intron (NM_001099746, intron 1 of 5) intron (NM_001099746, intron 1 of 5) -13661 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 2171 chr1 181139797 181139901 + 0 NA Intergenic Intergenic -34635 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 21988 chr4 168098363 168098467 + 0 NA intron (NM_007193, intron 1 of 11) intron (NM_007193, intron 1 of 11) 5878 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 19990 chr3 119702884 119702989 + 0 NA promoter-TSS (NM_001320316) promoter-TSS (NM_001320316) -86 NM_001320316 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 11464 chr16 65884307 65884411 + 0 NA Intergenic Intergenic -308059 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 10762 chr15 95087026 95087130 + 0 NA Intergenic Intergenic 231715 NR_077061 440311 Hs.745156 NR_077061 ENSG00000260521 LOC440311 - glioma tumor suppressor candidate region gene 2 pseudogene pseudo 20745 chr3 179898161 179898265 + 0 NA promoter-TSS (NR_110059) promoter-TSS (NR_110059) 19 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 4373 chr10 112875923 112876027 + 0 NA Intergenic Intergenic 52479 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 8942 chr14 45679995 45680124 + 0 NA Intergenic Intergenic -384100 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 28400 chr8 106657555 106657574 + 0 NA promoter-TSS (NM_181354) promoter-TSS (NM_181354) -244 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 8967 chr14 50007682 50007828 + 0 NA promoter-TSS (NR_126498) promoter-TSS (NR_126498) -235 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 30763 chrX 56232316 56232386 + 0 NA promoter-TSS (NM_001159296) promoter-TSS (NM_001159296) -5 NM_001159296 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 20864 chr3 186320875 186320979 + 0 NA intron (NM_001080744, intron 1 of 23) intron (NM_001080744, intron 1 of 23) 41307 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 25225 chr6 139195002 139195077 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 59927 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 4702 chr11 2992337 2992455 + 0 NA promoter-TSS (NM_005969) promoter-TSS (NM_005969) -19 NM_005969 4676 Hs.731784 NM_005969 ENSG00000205531 NAP1L4 NAP1L4b|NAP2|NAP2L|hNAP2 nucleosome assembly protein 1 like 4 protein-coding 23702 chr5 170467112 170467216 + 0 NA intron (NM_001034838, intron 1 of 7) L2b|LINE|L2 -36872 NM_001278339 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 22823 chr5 83632977 83633178 + 0 NA Intergenic MER39|LTR|ERV1 -70763 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 14429 chr19 38838714 38838838 + 0 NA intron (NM_001533, intron 9 of 12) intron (NM_001533, intron 9 of 12) -6919 NM_001398 1891 Hs.196176 NM_001398 ENSG00000104823 ECH1 HPXEL enoyl-CoA hydratase 1 protein-coding 26352 chr7 66628759 66628828 + 0 NA promoter-TSS (NM_001167961) promoter-TSS (NM_001167961) -88 NM_001167961 154881 Hs.546627 NM_153033 ENSG00000243335 KCTD7 CLN14|EPM3 potassium channel tetramerization domain containing 7 protein-coding 19491 chr3 49218654 49218771 + 0 NA intron (NM_001135197, intron 2 of 7) LTR18B|LTR|ERVL 19212 NM_001135197 339834 Hs.631931 NM_178173 ENSG00000173421 CCDC36 CT74 coiled-coil domain containing 36 protein-coding 26609 chr7 93728464 93728484 + 0 NA Intergenic L2c|LINE|L2 11546 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 21134 chr4 4248221 4248325 + 0 NA promoter-TSS (NM_001297551) promoter-TSS (NM_001297551) -31 NM_001297552 85013 Hs.12845 NM_032927 ENSG00000132406 TMEM128 - transmembrane protein 128 protein-coding 2170 chr1 181135072 181135200 + 0 NA Intergenic Intergenic -39348 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 8687 chr14 21456123 21456297 + 0 NA Intergenic CpG -18912 NM_020920 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 21243 chr4 22515938 22516042 + 0 NA promoter-TSS (NM_145290) promoter-TSS (NM_145290) 64 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 19849 chr3 110526876 110526980 + 0 NA Intergenic Intergenic 543031 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 18891 chr22 38202007 38202059 + 0 NA promoter-TSS (NM_001161573) promoter-TSS (NM_001161573) 101 NM_001161574 23764 Hs.517617 NM_012323 ENSG00000185022 MAFF U-MAF|hMafF MAF bZIP transcription factor F protein-coding 15883 chr2 84882206 84882310 + 0 NA Intergenic Intergenic -1013 NM_001277053 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 25944 chr7 28409047 28409151 + 0 NA intron (NM_182899, intron 1 of 9) CpG -3426 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 9182 chr14 63563727 63563861 + 0 NA Intergenic L1M4|LINE|L1 -20433 NM_006246 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E - protein phosphatase 2 regulatory subunit B'epsilon protein-coding 9078 chr14 56579775 56579808 + 0 NA promoter-TSS (NM_017799) promoter-TSS (NM_017799) -2 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101 transmembrane protein 260 protein-coding 10655 chr15 89068376 89068478 + 0 NA Intergenic MLT1G3|LTR|ERVL-MaLR -19723 NM_007011 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 25301 chr6 148415608 148415697 + 0 NA intron (NM_015278, intron 2 of 19) intron (NM_015278, intron 2 of 19) 73059 NM_015278 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 29530 chr9 91423791 91423939 + 0 NA promoter-TSS (NM_005384) promoter-TSS (NM_005384) -3 NM_005384 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 23239 chr5 134176842 134176997 + 0 NA 5' UTR (NM_170679, exon 1 of 6) 5' UTR (NM_170679, exon 1 of 6) 114 NM_170679 6500 Hs.171626 NM_006930 ENSG00000113558 SKP1 EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A S-phase kinase associated protein 1 protein-coding 6560 chr12 8026675 8026799 + 0 NA Intergenic Intergenic -6026 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 12953 chr17 72631660 72631764 + 0 NA intron (NR_033876, intron 2 of 4) intron (NR_033876, intron 2 of 4) 8760 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 16618 chr2 168545944 168546048 + 0 NA intron (NM_203463, intron 1 of 9) intron (NM_203463, intron 1 of 9) -36947 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 16421 chr2 145061035 145061139 + 0 NA intron (NR_033870, intron 3 of 4) LTR16A|LTR|ERVL 393120 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 8296 chr13 52356545 52356649 + 0 NA Intergenic MER21C|LTR|ERVL 22302 NR_120400 103191607 NR_120400 ENSG00000271564 LOC103191607 - uncharacterized LOC103191607 ncRNA 18045 chr20 43514101 43514210 + 0 NA promoter-TSS (NM_015478) promoter-TSS (NM_015478) -281 NM_015478 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 l(3)mbt-like 1 (Drosophila) protein-coding 14259 chr19 18204027 18204131 + 0 NA promoter-TSS (NR_134910) promoter-TSS (NR_134910) -15 NM_002866 5864 Hs.27744 NM_002866 ENSG00000105649 RAB3A - RAB3A, member RAS oncogene family protein-coding 9433 chr14 77377004 77377149 + 0 NA promoter-TSS (NM_001010860) promoter-TSS (NM_001010860) 33 NM_213601 283578 Hs.26403 NM_213601 ENSG00000100580 TMED8 FAM15B transmembrane p24 trafficking protein family member 8 protein-coding 339 chr1 23019255 23019387 + 0 NA promoter-TSS (NM_001009999) promoter-TSS (NM_001009999) -127 NM_015013 23028 Hs.591518 NM_015013 ENSG00000004487 KDM1A AOF2|BHC110|CPRF|KDM1|LSD1 lysine demethylase 1A protein-coding 26846 chr7 113421822 113421945 + 0 NA Intergenic Intergenic -303301 NR_024412 401397 Hs.117929 NR_015442 ENSG00000214194 LINC00998 - long intergenic non-protein coding RNA 998 ncRNA 25856 chr7 23334743 23334893 + 0 NA intron (NM_006547, intron 10 of 14) intron (NM_006547, intron 10 of 14) 35497 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 17745 chr20 21048979 21049083 + 0 NA Intergenic Intergenic -76952 NM_001163022 55857 Hs.187635 NM_018474 ENSG00000088970 KIZ C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69 kizuna centrosomal protein protein-coding 27301 chr7 158856537 158856537 + 0 NA promoter-TSS (NM_018051) promoter-TSS (NM_018051) -41 NM_018051 55112 Hs.389945 NM_018051 ENSG00000126870 WDR60 FAP163|SRPS6|SRTD8 WD repeat domain 60 protein-coding 16190 chr2 118013965 118014069 + 0 NA 5' UTR (NM_019044, exon 1 of 24) 5' UTR (NM_019044, exon 1 of 24) 146 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 20351 chr3 148158345 148158449 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger 80238 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 2872 chr1 227764006 227764110 + 0 NA intron (NM_001323934, intron 3 of 4) intron (NM_001323934, intron 3 of 4) 28363 NM_001323934 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 3677 chr10 50624524 50624628 + 0 NA promoter-TSS (NR_126411) promoter-TSS (NR_126411) -375 NR_126411 104355295 Hs.450493 NR_126411 SGMS1-AS1 - SGMS1 antisense RNA 1 ncRNA 8833 chr14 34060247 34060351 + 0 NA Intergenic CpG -109221 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 8068 chr13 31045874 31046052 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 113266 NM_152325 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 11088 chr16 19523767 19523871 + 0 NA promoter-TSS (NM_001199022) promoter-TSS (NM_001199022) -38 NM_001323570 9738 Hs.279912 NM_014711 ENSG00000103540 CCP110 CP110|Cep110 centriolar coiled-coil protein 110 protein-coding 1297 chr1 91732537 91732641 + 0 NA intron (NM_001195683, intron 5 of 16) intron (NM_001195683, intron 5 of 16) 153690 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 9033 chr14 54509735 54509919 + 0 NA promoter-TSS (NM_006568) promoter-TSS (NM_006568) -42 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 26441 chr7 76047860 76047964 + 0 NA promoter-TSS (NM_001282404) promoter-TSS (NM_001282404) 91 NM_001317787 51657 Hs.11615 NM_016086 ENSG00000127952 STYXL1 DUSP24|MK-STYX|MKSTYX serine/threonine/tyrosine interacting like 1 protein-coding 5776 chr11 85811139 85811243 + 0 NA promoter-TSS (NM_032943) promoter-TSS (NM_032943) -32 NM_001289608 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 20590 chr3 168071698 168071787 + 0 NA intron (NM_014498, intron 1 of 15) intron (NM_014498, intron 1 of 15) 24183 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 7574 chr12 105254002 105254106 + 0 NA Intergenic Intergenic -17824 NM_001251904 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 28701 chr8 131381781 131381938 + 0 NA Intergenic MER49|LTR|ERV1 -341270 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 28383 chr8 104665397 104665501 + 0 NA Intergenic Intergenic -76425 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 ST7 LDL receptor related protein 12 protein-coding 25084 chr6 122735769 122735873 + 0 NA Intergenic Intergenic -13380 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 28407 chr8 107187342 107187501 + 0 NA Intergenic Intergenic 149094 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 21226 chr4 21447788 21447892 + 0 NA intron (NM_147182, intron 2 of 8) MER44B|DNA|TcMar-Tigger 16918 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 12684 chr17 50719491 50719655 + 0 NA promoter-TSS (NM_006107) promoter-TSS (NM_006107) 8 NM_006107 51747 Hs.130293 NM_006107 ENSG00000108848 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7 like 3 pre-mRNA splicing factor protein-coding 31057 chrX 130268769 130268972 + 0 NA promoter-TSS (NM_017666) promoter-TSS (NM_017666) 78 NM_017666 55609 Hs.308418 NM_017666 ENSG00000056277 ZNF280C SUHW3|ZNF633 zinc finger protein 280C protein-coding 20942 chr3 190356405 190356521 + 0 NA Intergenic Intergenic -31409 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 5572 chr11 67955781 67955927 + 0 NA Intergenic CpG 48271 NM_030930 81622 Hs.502989 NM_030930 ENSG00000110057 UNC93B1 IIAE1|UNC93|UNC93B|Unc-93B1 unc-93 homolog B1 (C. elegans) protein-coding 27632 chr8 29513512 29513616 + 0 NA Intergenic Intergenic -162814 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 21175 chr4 10106708 10106812 + 0 NA intron (NM_017491, intron 2 of 14) intron (NM_017491, intron 2 of 14) 10189 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 7486 chr12 97939272 97939429 + 0 NA promoter-TSS (NR_039716) promoter-TSS (NR_039716) -229 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 9417 chr14 76959437 76959571 + 0 NA promoter-TSS (NR_133913) promoter-TSS (NR_133913) -134 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 28716 chr8 133033382 133033513 + 0 NA intron (NM_003235, intron 41 of 47) intron (NM_003235, intron 41 of 47) 13134 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 17744 chr20 20712827 20712964 + 0 NA promoter-TSS (NM_020343) promoter-TSS (NM_020343) -272 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 1956 chr1 162696461 162696565 + 0 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 64075 NM_001014796 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10 discoidin domain receptor tyrosine kinase 2 protein-coding 3333 chr10 15088767 15088871 + 0 NA promoter-TSS (NM_001039844) promoter-TSS (NM_001039844) -43 NR_144471 108949267 Hs.723069 NR_144471 ACBD7-DCLRE1CP1 - ACBD7-DCLRE1CP1 readthrough ncRNA 24744 chr6 56955349 56955453 + 0 NA promoter-TSS (NM_001144769) promoter-TSS (NM_001144769) 426 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 10332 chr15 67127395 67127499 + 0 NA intron (NM_001145102, intron 1 of 8) intron (NM_001145102, intron 1 of 8) 1731 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 238 chr1 16727436 16727590 + 0 NA Intergenic Intergenic 6948 NM_001310138 729587 NM_001310138 ENSG00000268674 FAM231C - family with sequence similarity 231 member C protein-coding 2778 chr1 222814997 222815090 + 0 NA promoter-TSS (NM_032890) promoter-TSS (NM_032890) -46 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 25492 chr6 169213172 169213208 + 0 NA promoter-TSS (NR_134621) promoter-TSS (NR_134621) -22 NR_134621 101929523 Hs.442696 NR_134621 ENSG00000226445 LOC101929523 - uncharacterized LOC101929523 ncRNA 873 chr1 52141879 52142091 + 0 NA promoter-TSS (NM_004799) promoter-TSS (NM_004799) -109 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 19521 chr3 50601148 50601252 + 0 NA Intergenic Intergenic 10631 NM_013324 1154 Hs.655334 NM_013324 ENSG00000114737 CISH BACTS2|CIS|CIS-1|G18|SOCS cytokine inducible SH2 containing protein protein-coding 17204 chr2 226427680 226427784 + 0 NA Intergenic Intergenic 231061 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 25956 chr7 29606426 29606530 + 0 NA Intergenic Intergenic 40945 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 12979 chr17 74758075 74758141 + 0 NA intron (NM_004252, intron 1 of 5) intron (NM_004252, intron 1 of 5) 9495 NR_037409 100500847 NR_037409 ENSG00000109062 MIR3615 mir-3615 microRNA 3615 ncRNA 20291 chr3 141482407 141482558 + 0 NA Intergenic Intergenic -4565 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 12151 chr17 17016407 17016464 + 0 NA Intergenic L1ME4b|LINE|L1 -26325 NM_201274 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 2631 chr1 212414947 212415051 + 0 NA promoter-TSS (NM_001198862) promoter-TSS (NM_001198862) -74 NM_018252 55248 Hs.445386 NM_018252 ENSG00000065600 TMEM206 C1orf75 transmembrane protein 206 protein-coding 9987 chr15 43219437 43219557 + 0 NA intron (NM_001114134, intron 1 of 12) intron (NM_001114134, intron 1 of 12) 1628 NM_001114134 2038 Hs.368642 NM_000119 ENSG00000166947 EPB42 PA|SPH5 erythrocyte membrane protein band 4.2 protein-coding 18474 chr21 32392954 32393075 + 0 NA promoter-TSS (NM_014825) promoter-TSS (NM_014825) -11 NM_014825 9875 Hs.473611 NM_014825 ENSG00000142207 URB1 C21orf108|NPA1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein-coding 7571 chr12 105107652 105107792 + 0 NA promoter-TSS (NM_001293640) promoter-TSS (NM_001293640) 8 NM_001293640 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 31006 chrX 119503182 119503212 + 0 NA Intergenic Intergenic -34077 NR_028443 100303728 Hs.714405 NR_028443 ENSG00000224281 SLC25A5-AS1 - SLC25A5 antisense RNA 1 ncRNA 13775 chr18 74148326 74148481 + 0 NA promoter-TSS (NM_152676) promoter-TSS (NM_152676) -108 NM_014177 29090 Hs.532835 NM_014177 ENSG00000075336 TIMM21 C18orf55|HSPC154|TIM21 translocase of inner mitochondrial membrane 21 protein-coding 9804 chr15 29822051 29822162 + 0 NA promoter-TSS (NM_001301026).2 promoter-TSS (NM_001301026).2 397 NM_003257 7082 Hs.743990 NM_003257 ENSG00000104067 TJP1 ZO-1 tight junction protein 1 protein-coding 15510 chr2 47402943 47403087 + 0 NA promoter-TSS (NM_000251) promoter-TSS (NM_000251) -52 NM_000251 4436 Hs.597656 NM_000251 ENSG00000095002 MSH2 COCA1|FCC1|HNPCC|HNPCC1|LCFS2 mutS homolog 2 protein-coding 12958 chr17 73092705 73092861 + 0 NA promoter-TSS (NM_001159770) promoter-TSS (NM_001159770) -69 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP11 solute carrier family 39 member 11 protein-coding 20622 chr3 170181487 170181527 + 0 NA intron (NM_024947, intron 1 of 14) CpG 242 NM_001308116 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 3297 chr10 13161374 13161552 + 0 NA promoter-TSS (NM_018518) promoter-TSS (NM_018518) -91 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 10948 chr16 4425517 4425621 + 0 NA promoter-TSS (NM_001135110) promoter-TSS (NM_001135110) -236 NM_001135110 9093 Hs.459779 NM_005147 ENSG00000103423 DNAJA3 HCA57|TID1|hTID-1 DnaJ heat shock protein family (Hsp40) member A3 protein-coding 9428 chr14 77181697 77181845 + 0 NA promoter-TSS (NM_020431) promoter-TSS (NM_020431) 12 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 22676 chr5 68899309 68899390 + 0 NA Intergenic Intergenic 130578 NR_130778 101928885 Hs.630474 NR_130778 LOC101928885 - uncharacterized LOC101928885 ncRNA 14762 chr19 53395021 53395136 + 0 NA promoter-TSS (NM_001040185) promoter-TSS (NM_001040185) -66 NM_001040185 91661 Hs.685640 NM_138372 ENSG00000196417 ZNF765 - zinc finger protein 765 protein-coding 14707 chr19 49869495 49869682 + 0 NA 3' UTR (NM_001278159, exon 5 of 5) 3' UTR (NM_001278159, exon 5 of 5) -2023 NM_007254 11284 Hs.78016 NM_007254 ENSG00000039650 PNKP AOA4|EIEE10|MCSZ|PNK polynucleotide kinase 3'-phosphatase protein-coding 27237 chr7 151598271 151598375 + 0 NA intron (NM_016203, intron 5 of 15) L1MA6|LINE|L1 33935 NM_024429 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 25499 chr6 169751513 169751675 + 0 NA promoter-TSS (NM_001278531) promoter-TSS (NM_001278531) -11 NM_174910 6991 Hs.733746 NM_174910 ENSG00000184786 TCTE3 TCTEX1D3 t-complex-associated-testis-expressed 3 protein-coding 27614 chr8 28386209 28386313 + 0 NA intron (NM_018660, intron 1 of 9) CpG 199 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 12045 chr17 7484648 7484871 + 0 NA promoter-TSS (NM_020899) promoter-TSS (NM_020899) 380 NM_000937 5430 Hs.270017 NM_000937 ENSG00000181222 POLR2A POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1 RNA polymerase II subunit A protein-coding 9974 chr15 42575351 42575547 + 0 NA promoter-TSS (NM_020759) promoter-TSS (NM_020759) -210 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 22294 chr5 17340958 17341062 + 0 NA Intergenic Intergenic 46300 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 20928 chr3 189944528 189944694 + 0 NA Intergenic Intergenic 114689 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 13022 chr17 75785058 75785162 + 0 NA promoter-TSS (NR_039892) promoter-TSS (NR_039892) 271 NM_001080419 85451 Hs.584768 NM_001080419 ENSG00000132478 UNK UNKEMPT|ZC3H5|ZC3HDC5 unkempt family zinc finger protein-coding 21546 chr4 86594201 86594308 + 0 NA promoter-TSS (NM_006264) promoter-TSS (NM_006264) -61 NM_006264 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase, non-receptor type 13 protein-coding 24493 chr6 37433095 37433249 + 0 NA promoter-TSS (NM_015050) promoter-TSS (NM_015050) 41 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 7746 chr12 120231569 120231673 + 0 NA intron (NM_001080855, intron 1 of 11) intron (NM_001080855, intron 1 of 11) 18540 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 9680 chr14 100851342 100851446 + 0 NA promoter-TSS (NR_030528) promoter-TSS (NR_030528) -996 NR_030528 768222 NR_030528 ENSG00000211574 MIR770 MIRN770|hsa-mir-770 microRNA 770 ncRNA 20298 chr3 141875675 141875797 + 0 NA promoter-TSS (NM_001679) promoter-TSS (NM_001679) -856 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 2839 chr1 225875576 225875729 + 0 NA intron (NM_014698, intron 3 of 24) intron (NM_014698, intron 3 of 24) 7068 NM_014698 9725 Hs.119387 NM_014698 ENSG00000196187 TMEM63A KIAA0792 transmembrane protein 63A protein-coding 14670 chr19 48965175 48965271 + 0 NA promoter-TSS (NM_000146) promoter-TSS (NM_000146) -86 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 27429 chr8 13876319 13876476 + 0 NA Intergenic Intergenic 246707 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 12274 chr17 28812490 28812623 + 0 NA promoter-TSS (NM_001288634) promoter-TSS (NM_001288634) -121 NM_001288634 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 14677 chr19 49119196 49119259 + 0 NA promoter-TSS (NM_018111) promoter-TSS (NM_018111) -87 NM_018111 55150 Hs.458310 NM_018111 ENSG00000221916 C19orf73 - chromosome 19 open reading frame 73 protein-coding 14884 chr19 58573442 58573552 + 0 NA promoter-TSS (NM_198055) promoter-TSS (NM_198055) 78 NM_003422 7593 Hs.399810 NM_003422 ENSG00000099326 MZF1 MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6 myeloid zinc finger 1 protein-coding 15627 chr2 61538379 61538499 + 0 NA promoter-TSS (NM_003400) promoter-TSS (NM_003400) -156 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM1|emb|exp1 exportin 1 protein-coding 10817 chr15 100958862 100958966 + 0 NA intron (NM_024652, intron 2 of 33) intron (NM_024652, intron 2 of 33) -39631 NR_135828 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 16812 chr2 189762692 189762854 + 0 NA promoter-TSS (NR_102429) promoter-TSS (NR_102429) -7 NR_102429 101409258 Hs.738558 NR_102429 OSGEPL1-AS1 - OSGEPL1 antisense RNA 1 ncRNA 23099 chr5 121725584 121725681 + 0 NA Intergenic L1PA8|LINE|L1 -126323 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 20026 chr3 122325023 122325173 + 0 NA promoter-TSS (NM_005213) promoter-TSS (NM_005213) -66 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 1290 chr1 91016344 91016383 + 0 NA intron (NM_032186, intron 1 of 3) Tigger3a|DNA|TcMar-Tigger 5145 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 26048 chr7 35993865 35993979 + 0 NA Intergenic Intergenic -101388 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 7024 chr12 52192278 52192415 + 0 NA promoter-TSS (NM_001081492) promoter-TSS (NM_001081492) -346 NM_001081492 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 22700 chr5 72308358 72308516 + 0 NA intron (NM_015084, intron 2 of 10) CpG 11820 NM_001286748 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 18177 chr20 50153716 50153820 + 0 NA promoter-TSS (NM_001162505) promoter-TSS (NM_001162505) 30 NM_001162505 387521 Hs.744839 NM_199129 ENSG00000240849 TMEM189 KUA transmembrane protein 189 protein-coding 12121 chr17 14206085 14206241 + 0 NA intron (NM_001303, intron 6 of 6) intron (NM_001303, intron 6 of 6) 30670 NM_001007530 146822 Hs.735172 NM_001007530 ENSG00000223510 CDRT15 - CMT1A duplicated region transcript 15 protein-coding 20041 chr3 123585104 123585223 + 0 NA promoter-TSS (NR_121654) promoter-TSS (NR_121654) 22 NM_001329784 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 21645 chr4 102868838 102869012 + 0 NA promoter-TSS (NM_181890) promoter-TSS (NM_181890) -32 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 20150 chr3 130850194 130850355 + 0 NA promoter-TSS (NM_001199181) promoter-TSS (NM_001199181) -251 NM_001199182 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 1132 chr1 75786132 75786285 + 0 NA promoter-TSS (NM_004582) promoter-TSS (NM_004582) 14 NR_073562 5876 Hs.78948 NM_004582 ENSG00000137955 RABGGTB GGTB Rab geranylgeranyltransferase beta subunit protein-coding 23798 chr5 177600036 177600147 + 0 NA promoter-TSS (NM_007255) promoter-TSS (NM_007255) -27 NM_007255 11285 Hs.455109 NM_007255 ENSG00000027847 B4GALT7 EDSP1|EDSSLA|XGALT1|XGPT1 beta-1,4-galactosyltransferase 7 protein-coding 7890 chr12 130819172 130819188 + 0 NA intron (NM_194356, intron 3 of 10) CpG 20094 NM_194356 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 21486 chr4 78569408 78569557 + 0 NA intron (NM_005139, intron 2 of 12) intron (NM_005139, intron 2 of 12) 17894 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 17246 chr2 230220129 230220184 + 0 NA promoter-TSS (NM_004509) promoter-TSS (NM_004509) -44 NM_080424 3431 Hs.145150 NM_004509 ENSG00000135899 SP110 IFI41|IFI75|IPR1|VODI SP110 nuclear body protein protein-coding 8666 chr14 20469303 20469459 + 0 NA promoter-TSS (NM_000270) promoter-TSS (NM_000270) 2 NM_000270 4860 Hs.75514 NM_000270 ENSG00000198805 PNP NP|PRO1837|PUNP purine nucleoside phosphorylase protein-coding 3847 chr10 71212516 71212689 + 0 NA promoter-TSS (NM_001244889) promoter-TSS (NM_001244889) 67 NM_170744 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 9242 chr14 67221756 67221886 + 0 NA intron (NM_173526, intron 7 of 8) intron (NM_173526, intron 7 of 8) -19474 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 547 chr1 32236287 32236391 + 0 NA intron (NR_026850, intron 3 of 6) Tigger7|DNA|TcMar-Tigger 5371 NR_026850 339483 Hs.471067 NR_026850 MTMR9LP MTMR9L myotubularin related protein 9-like, pseudogene pseudo 26188 chr7 45111674 45111794 + 0 NA promoter-TSS (NM_001261834) promoter-TSS (NM_001261834) 13 NM_030900 9238 Hs.231411 NM_004749 ENSG00000136270 TBRG4 CPR2|FASTKD4 transforming growth factor beta regulator 4 protein-coding 7856 chr12 124927950 124928051 + 0 NA Intergenic Intergenic 12453 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 23122 chr5 124629161 124629284 + 0 NA Intergenic Intergenic 115890 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 949 chr1 58825160 58825264 + 0 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 40061 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 17440 chr20 1266136 1266240 + 0 NA promoter-TSS (NM_001318234) promoter-TSS (NM_001318234) -103 NM_001318234 9751 Hs.323833 NM_014723 ENSG00000101298 SNPH - syntaphilin protein-coding 8995 chr14 51565072 51565205 + 0 NA intron (NR_047477, intron 2 of 3) intron (NR_047477, intron 2 of 3) 34814 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 20176 chr3 133461401 133461500 + 0 NA intron (NR_135276, intron 1 of 4) intron (NR_135276, intron 1 of 4) -5674 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 25455 chr6 163226723 163226827 + 0 NA intron (NM_001080379, intron 4 of 4) LTR16A1|LTR|ERVL -34773 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 20044 chr3 123732555 123732721 + 0 NA intron (NM_053026, intron 10 of 32) intron (NM_053026, intron 10 of 32) 42994 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 4970 chr11 19079797 19079901 + 0 NA Intergenic Intergenic -19168 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 8760 chr14 24271522 24271678 + 0 NA promoter-TSS (NM_004581) promoter-TSS (NM_004581) 27 NM_182836 5875 Hs.377992 NM_004581 ENSG00000100949 RABGGTA PTAR3 Rab geranylgeranyltransferase alpha subunit protein-coding 9292 chr14 69643609 69643713 + 0 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 32068 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 28301 chr8 100472271 100472299 + 0 NA Intergenic Intergenic 87426 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 20642 chr3 171261591 171261779 + 0 NA intron (NM_001161560, intron 2 of 31) L2a|LINE|L2 -154926 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 7591 chr12 106955875 106955979 + 0 NA promoter-TSS (NM_001319662) promoter-TSS (NM_001319662) 205 NM_001319661 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 17132 chr2 219689240 219689344 + 0 NA Intergenic Intergenic 61722 NR_048551 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 17917 chr20 35208518 35208647 + 0 NA Intergenic Intergenic -18154 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 13819 chr18 79246658 79246806 + 0 NA intron (NM_198531, intron 11 of 29) intron (NM_198531, intron 11 of 29) -149040 NM_001278669 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding 7903 chr12 131949693 131949797 + 0 NA promoter-TSS (NM_015409) promoter-TSS (NM_015409) -175 NM_015409 57634 Hs.723478 NM_015409 ENSG00000183495 EP400 CAGH32|P400|TNRC12 E1A binding protein p400 protein-coding 7731 chr12 119208727 119208861 + 0 NA Intergenic MER126|DNA|DNA 30004 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 13301 chr18 22223784 22223926 + 0 NA Intergenic Intergenic 54418 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 1276 chr1 89808634 89808738 + 0 NA Intergenic Intergenic -12328 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family member D protein-coding 11310 chr16 48623288 48623442 + 0 NA Intergenic Intergenic -13156 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 4121 chr10 95394255 95394349 + 0 NA intron (NM_001034955, intron 12 of 30) intron (NM_001034955, intron 12 of 30) 46878 NM_001034955 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 4315 chr10 105347556 105347659 + 0 NA Intergenic L2b|LINE|L2 472726 NR_120625 101927549 Hs.556885 NR_120625 LOC101927549 - uncharacterized LOC101927549 ncRNA 9472 chr14 81329797 81329934 + 0 NA intron (NM_001256430, intron 5 of 7) intron (NM_001256430, intron 5 of 7) 97347 NM_033104 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 16040 chr2 101410787 101410891 + 0 NA intron (NM_001145664, intron 8 of 11) intron (NM_001145664, intron 8 of 11) -23336 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 14046 chr19 9054908 9055064 + 0 NA Intergenic Intergenic -38259 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor family 1 subfamily M member 1 protein-coding 13573 chr18 50560008 50560112 + 0 NA promoter-TSS (NM_002747) promoter-TSS (NM_002747) -54 NM_002747 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 27201 chr7 149126202 149126355 + 0 NA promoter-TSS (NM_001001661) promoter-TSS (NM_001001661) 68 NM_001001661 155054 Hs.31743 NM_001001661 ENSG00000204947 ZNF425 - zinc finger protein 425 protein-coding 17710 chr20 18971769 18971788 + 0 NA Intergenic Intergenic -141575 NM_001302818 100128496 Hs.664484 NM_001242671 C20orf78 dJ1068E13.1 chromosome 20 open reading frame 78 protein-coding 25439 chr6 160386973 160387117 + 0 NA intron (NM_021977, intron 1 of 10) intron (NM_021977, intron 1 of 10) 38672 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 28040 chr8 74174018 74174122 + 0 NA Intergenic LTR8B|LTR|ERV1 147291 NM_001317830 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 8398 chr13 77537690 77537748 + 0 NA intron (NM_144777, intron 1 of 32) intron (NM_144777, intron 1 of 32) 2045 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 30813 chrX 71118506 71118627 + 0 NA promoter-TSS (NM_005120) promoter-TSS (NM_005120) 10 NM_005120 9968 Hs.409226 NM_005120 ENSG00000184634 MED12 ARC240|CAGH45|FGS1|HOPA|MED12S|OHDOX|OKS|OPA1|TNRC11|TRAP230 mediator complex subunit 12 protein-coding 18395 chr20 63216152 63216246 + 0 NA promoter-TSS (NM_017798) promoter-TSS (NM_017798) -13 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 17311 chr2 234464024 234464128 + 0 NA Intergenic Intergenic 32973 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 1702 chr1 151165914 151166018 + 0 NA promoter-TSS (NM_212551) promoter-TSS (NM_212551) -18 NM_001136543 388695 Hs.591482 NM_212551 ENSG00000163155 LYSMD1 SB145 LysM domain containing 1 protein-coding 25230 chr6 139764819 139764923 + 0 NA Intergenic Intergenic -6202 NR_038399 100132735 Hs.62646 NR_038399 LOC100132735 - uncharacterized LOC100132735 ncRNA 20721 chr3 177835119 177835223 + 0 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 18306 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 12915 chr17 69857590 69857694 + 0 NA intron (NR_109972, intron 4 of 4) L1MEg2|LINE|L1 -104065 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 28539 chr8 121673637 121673775 + 0 NA Intergenic Intergenic -32316 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 20585 chr3 167735098 167735202 + 0 NA promoter-TSS (NM_007217) promoter-TSS (NM_007217) -287 NM_145859 11235 Hs.478150 NM_007217 ENSG00000114209 PDCD10 CCM3|TFAR15 programmed cell death 10 protein-coding 19311 chr3 32238602 32238706 + 0 NA promoter-TSS (NM_001320308) promoter-TSS (NM_001320308) -25 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 4141 chr10 96513866 96514020 + 0 NA promoter-TSS (NM_012465) promoter-TSS (NM_012465) -17 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 18913 chr22 39212798 39212885 + 0 NA Intergenic Intergenic 28068 NM_033016 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 5212 chr11 44862366 44862503 + 0 NA intron (NM_130783, intron 2 of 8) intron (NM_130783, intron 2 of 8) 87774 NM_001318384 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 23654 chr5 163437412 163437516 + 0 NA promoter-TSS (NM_004060) promoter-TSS (NM_004060) -107 NM_199246 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 6565 chr12 8180209 8180313 + 0 NA promoter-TSS (NR_026788) promoter-TSS (NR_026788) 52 NR_026788 440078 Hs.512257 NR_026788 ENSG00000226711 FAM66C - family with sequence similarity 66 member C ncRNA 17449 chr20 1777310 1777460 + 0 NA intron (NR_037142, intron 2 of 3) CpG 2361 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 20807 chr3 184017945 184018072 + 0 NA promoter-TSS (NR_135125) promoter-TSS (NR_135125) -48 NM_001023587 10057 Hs.368563 NM_005688 ENSG00000114770 ABCC5 ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 ATP binding cassette subfamily C member 5 protein-coding 21651 chr4 103451453 103451557 + 0 NA Intergenic L2b|LINE|L2 26463 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LOC101929448 - uncharacterized LOC101929448 ncRNA 19136 chr3 9649275 9649446 + 0 NA promoter-TSS (NM_022485) promoter-TSS (NM_022485) -73 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 26143 chr7 43108500 43108654 + 0 NA Intergenic MER74B|LTR|ERVL -4022 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 5343 chr11 61430026 61430164 + 0 NA promoter-TSS (NM_024811) promoter-TSS (NM_024811) -30 NM_017841 54949 Hs.313247 NM_017841 ENSG00000167985 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 1351 chr1 94864147 94864251 + 0 NA intron (NM_152369, intron 9 of 13) intron (NM_152369, intron 9 of 13) 43655 NM_152369 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 22916 chr5 96068110 96068146 + 0 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) -11010 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 2720 chr1 219325178 219325303 + 0 NA Intergenic Intergenic 150271 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 164 chr1 11060091 11060197 + 0 NA promoter-TSS (NM_003132) promoter-TSS (NM_003132) -110 NM_003132 6723 Hs.76244 NM_003132 ENSG00000116649 SRM PAPT|SPDSY|SPS1|SRML1 spermidine synthase protein-coding 8556 chr13 106100732 106100886 + 0 NA Intergenic Intergenic -275754 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 23092 chr5 119537975 119538079 + 0 NA intron (NM_001199291, intron 24 of 24) intron (NM_001199291, intron 24 of 24) 85530 NM_001199291 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 15730 chr2 68943660 68943764 + 0 NA Intergenic L1PA16|LINE|L1 9258 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 5030 chr11 26323977 26324081 + 0 NA intron (NM_001313726, intron 2 of 27) L1M4|LINE|L1 -8102 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 21155 chr4 7651753 7651857 + 0 NA intron (NM_020777, intron 4 of 26) LTR32|LTR|ERVL -102285 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 2898 chr1 228620863 228621017 + 0 NA TTS (NR_106988).2 TTS (NR_106988).2 586 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 10165 chr15 57505193 57505297 + 0 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -86659 NR_104368 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 882 chr1 53196723 53196836 + 0 NA 5' UTR (NM_001330589, exon 1 of 5) 5' UTR (NM_001330589, exon 1 of 5) 350 NM_001330589 1376 Hs.713535 NM_000098 ENSG00000157184 CPT2 CPT1|CPTASE|IIAE4 carnitine palmitoyltransferase 2 protein-coding 8647 chr13 113449239 113449403 + 0 NA promoter-TSS (NM_199162) promoter-TSS (NM_199162) -179 NM_199162 113622 Hs.98669 NM_138430 ENSG00000153531 ADPRHL1 ARH2 ADP-ribosylhydrolase like 1 protein-coding 27988 chr8 69466614 69466803 + 0 NA promoter-TSS (NM_001128204) promoter-TSS (NM_001128204) 84 NM_001128204 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 16661 chr2 172408570 172408720 + 0 NA Intergenic Intergenic -18709 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 22878 chr5 91380112 91380216 + 0 NA promoter-TSS (NR_027435) promoter-TSS (NR_027435) 133 NM_001329670 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 8938 chr14 45253323 45253375 + 0 NA promoter-TSS (NM_018353) promoter-TSS (NM_018353) 53 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 13060 chr17 77323163 77323264 + 0 NA intron (NM_006640, intron 1 of 10) intron (NM_006640, intron 1 of 10) 3698 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 11506 chr16 67668036 67668181 + 0 NA intron (NM_001012984, intron 3 of 3) intron (NM_001012984, intron 3 of 3) 1294 NM_001012984 388284 Hs.632208 NM_001012984 ENSG00000159761 C16orf86 - chromosome 16 open reading frame 86 protein-coding 30008 chr9 118659200 118659304 + 0 NA Intergenic L2a|LINE|L2 710209 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 29775 chr9 107337091 107337195 + 0 NA Intergenic Intergenic 52374 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 23580 chr5 154682893 154682905 + 0 NA Intergenic (CTCCCCC)n|Simple_repeat|Simple_repeat -2877 NR_031638 100302284 NR_031638 ENSG00000221552 MIR1303 MIRN1303|hsa-mir-1303 microRNA 1303 ncRNA 30772 chrX 63434795 63434899 + 0 NA intron (NR_015353, intron 2 of 3) intron (NR_015353, intron 2 of 3) -83508 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 29201 chr9 71944848 71945004 + 0 NA intron (NM_182505, intron 1 of 3) intron (NM_182505, intron 1 of 3) 33419 NM_182505 138241 Hs.534190 NM_182505 ENSG00000155621 C9orf85 - chromosome 9 open reading frame 85 protein-coding 7217 chr12 63918836 63918955 + 0 NA intron (NM_020762, intron 1 of 21) L2a|LINE|L2 74142 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 8774 chr14 28382894 28383050 + 0 NA Intergenic Intergenic 382347 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 16017 chr2 100291271 100291417 + 0 NA intron (NM_198461, intron 9 of 11) intron (NM_198461, intron 9 of 11) 31389 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 29894 chr9 112379868 112380018 + 0 NA promoter-TSS (NM_001195822) promoter-TSS (NM_001195822) 34 NR_036651 84263 Hs.59486 NM_032303 ENSG00000119471 HSDL2 C9orf99|SDR13C1 hydroxysteroid dehydrogenase like 2 protein-coding 28816 chr8 143635914 143636060 + 0 NA promoter-TSS (NM_001261843) promoter-TSS (NM_001261843) -26 NM_001261843 9831 Hs.43133 NM_014789 ENSG00000183309 ZNF623 - zinc finger protein 623 protein-coding 28363 chr8 103120360 103120464 + 0 NA Intergenic L2c|LINE|L2 -20281 NM_024812 79870 Hs.533446 NM_024812 ENSG00000164929 BAALC - brain and acute leukemia, cytoplasmic protein-coding 4585 chr10 126062565 126062669 + 0 NA intron (NM_001288973, intron 14 of 22) intron (NM_001288973, intron 14 of 22) -89344 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 31023 chrX 120550105 120550209 + 0 NA intron (NM_001079872, intron 2 of 19) intron (NM_001079872, intron 2 of 19) 10805 NM_001079872 8450 Hs.102914 NM_003588 ENSG00000158290 CUL4B CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2 cullin 4B protein-coding 29928 chr9 114525596 114525700 + 0 NA Intergenic Intergenic -20192 NM_015404 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 3401 chr10 22003678 22003814 + 0 NA promoter-TSS (NM_022365) promoter-TSS (NM_022365) -25 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 22475 chr5 43631493 43631597 + 0 NA intron (NM_001331026, intron 6 of 20) intron (NM_001331026, intron 6 of 20) -28315 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 23976 chr6 7618387 7618453 + 0 NA Intergenic Intergenic 28221 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 22557 chr5 56350653 56350757 + 0 NA Intergenic Intergenic -117346 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 7074 chr12 53746657 53746828 + 0 NA Intergenic Intergenic 5093 NR_104333 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 14564 chr19 45523819 45523958 + 0 NA intron (NM_003370, intron 9 of 12) intron (NM_003370, intron 9 of 12) 16458 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator-stimulated phosphoprotein protein-coding 11207 chr16 30021643 30021765 + 0 NA Intergenic CpG -1630 NM_001109659 146378 Hs.651588 NM_001109659 ENSG00000167194 C16orf92 - chromosome 16 open reading frame 92 protein-coding 31125 chrX 147911638 147911774 + 0 NA promoter-TSS (NM_001185075) promoter-TSS (NM_001185075) 111 NR_024502 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 22556 chr5 56347388 56347492 + 0 NA Intergenic LTR29|LTR|ERV1 -114081 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 20323 chr3 143001466 143001582 + 0 NA promoter-TSS (NR_034032) promoter-TSS (NR_034032) -6 NM_001320222 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP associated SURP domain containing protein-coding 23113 chr5 123430095 123430199 + 0 NA Intergenic Intergenic -6555 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|SRTD13 centrosomal protein 120 protein-coding 4774 chr11 8006484 8006588 + 0 NA Intergenic Intergenic 9973 NR_125366 103581031 Hs.249366 NR_125366 ENSG00000255420 CASC23 LINC01464 cancer susceptibility candidate 23 (non-protein coding) ncRNA 978 chr1 61139536 61139679 + 0 NA intron (NM_005595, intron 2 of 9) intron (NM_005595, intron 2 of 9) 57299 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 3752 chr10 61903464 61903481 + 0 NA intron (NM_032199, intron 2 of 9) CpG 2218 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 17390 chr2 240560272 240560376 + 0 NA 5' UTR (NM_001033575, exon 1 of 3) 5' UTR (NM_001033575, exon 1 of 3) 270 NM_001033575 285193 Hs.369297 NM_001033575 ENSG00000188542 DUSP28 DUSP26|VHP dual specificity phosphatase 28 protein-coding 10421 chr15 72475201 72475227 + 0 NA promoter-TSS (NR_135678) promoter-TSS (NR_135678) 888 NM_005744 25820 Hs.268787 NM_005744 ENSG00000166233 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 26947 chr7 124246581 124246685 + 0 NA Intergenic Intergenic 105463 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 16320 chr2 130807645 130807834 + 0 NA Intergenic Intergenic 51448 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 26995 chr7 129949051 129949110 + 0 NA intron (NM_001202498, intron 1 of 6) intron (NM_001202498, intron 1 of 6) 3863 NM_001202498 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 31053 chrX 130111333 130111443 + 0 NA promoter-TSS (NM_001127197) promoter-TSS (NM_001127197) -675 NM_001127197 2000 Hs.271940 NM_001421 ENSG00000102034 ELF4 ELFR|MEF E74 like ETS transcription factor 4 protein-coding 20742 chr3 179604658 179604821 + 0 NA promoter-TSS (NM_177988) promoter-TSS (NM_177988) -48 NM_001199958 4711 Hs.730674 NM_002492 ENSG00000136521 NDUFB5 CISGDH|SGDH NADH:ubiquinone oxidoreductase subunit B5 protein-coding 12260 chr17 28508007 28508079 + 0 NA Intergenic Intergenic -15898 NM_003593 8456 Hs.58611 NM_003593 ENSG00000109101 FOXN1 FKHL20|RONU|WHN forkhead box N1 protein-coding 6121 chr11 115740025 115740110 + 0 NA Intergenic Intergenic -5305 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 5135 chr11 34394929 34395054 + 0 NA Intergenic L1PB1|LINE|L1 -36983 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 20215 chr3 135965652 135965777 + 0 NA promoter-TSS (NM_002718) promoter-TSS (NM_002718) 41 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 10583 chr15 83286342 83286462 + 0 NA Intergenic Intergenic -1686 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 30334 chr9 134164830 134165033 + 0 NA promoter-TSS (NR_023344) promoter-TSS (NR_023344) -367 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 9624 chr14 96269125 96269277 + 0 NA Intergenic Intergenic 12991 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 6041 chr11 110065352 110065456 + 0 NA Intergenic Intergenic -27957 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 7168 chr12 57772197 57772301 + 0 NA promoter-TSS (NM_015433) promoter-TSS (NM_015433) -118 NM_023033 4234 Hs.42957 NM_005371 ENSG00000037897 METTL1 C12orf1|TRM8|TRMT8|YDL201w methyltransferase like 1 protein-coding 1924 chr1 161074886 161074962 + 0 NA intron (NM_030916, intron 4 of 8) intron (NM_030916, intron 4 of 8) -4954 NM_001287602 257106 Hs.389374 NM_181720 ENSG00000186517 ARHGAP30 - Rho GTPase activating protein 30 protein-coding 13520 chr18 47931137 47931241 + 0 NA promoter-TSS (NM_005901) promoter-TSS (NM_005901) -43 NM_001003652 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 3042 chr1 237759497 237759579 + 0 NA intron (NM_001035, intron 82 of 104) intron (NM_001035, intron 82 of 104) -102637 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 22784 chr5 80255549 80255653 + 0 NA intron (NM_001174071, intron 1 of 12) CpG 481 NR_126061 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 5689 chr11 76783109 76783171 + 0 NA promoter-TSS (NR_120561) promoter-TSS (NR_120561) -78 NR_120562 101928837 Hs.656851 NR_120561 ENSG00000255100 LOC101928837 - uncharacterized LOC101928837 ncRNA 1214 chr1 85329047 85329192 + 0 NA intron (NM_001134445, intron 5 of 6) intron (NM_001134445, intron 5 of 6) -52215 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 15400 chr2 39523864 39523968 + 0 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) 86500 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 LOC728730 - uncharacterized LOC728730 ncRNA 15669 chr2 64784887 64784991 + 0 NA Intergenic Intergenic 78692 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 28466 chr8 117329035 117329211 + 0 NA Intergenic Intergenic -191590 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 7082 chr12 54017989 54018059 + 0 NA intron (NM_014620, intron 1 of 3) intron (NM_014620, intron 1 of 3) 1172 NR_003084 3222 Hs.549040 NM_018953 ENSG00000172789 HOXC5 CP11|HOX3|HOX3D homeobox C5 protein-coding 18519 chr21 36990483 36990587 + 0 NA promoter-TSS (NM_000411) promoter-TSS (NM_000411) -290 NM_000411 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 6177 chr11 118988269 118988412 + 0 NA Intergenic L2c|LINE|L2 -9793 NM_198489 338657 Hs.534613 NM_198489 ENSG00000186166 CCDC84 DLNB14 coiled-coil domain containing 84 protein-coding 9339 chr14 73027119 73027273 + 0 NA promoter-TSS (NM_001281734) promoter-TSS (NM_001281734) 16 NM_021260 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 21676 chr4 107690350 107690454 + 0 NA intron (NM_005443, intron 3 of 11) L2c|LINE|L2 29861 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 13550 chr18 49460656 49460809 + 0 NA promoter-TSS (NM_017653) promoter-TSS (NM_017653) -23 NM_017653 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 27898 chr8 58850998 58851102 + 0 NA intron (NM_014729, intron 4 of 8) intron (NM_014729, intron 4 of 8) -191205 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 18867 chr22 37552911 37553015 + 0 NA Intergenic Intergenic -7501 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 13204 chr18 712588 712646 + 0 NA promoter-TSS (NM_202758) promoter-TSS (NM_202758) 45 NM_017512 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 RTS|TYMSAS enolase superfamily member 1 protein-coding 5146 chr11 34685352 34685482 + 0 NA Intergenic Intergenic 52953 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 9447 chr14 78254180 78254268 + 0 NA intron (NR_073547, intron 2 of 20) intron (NR_073547, intron 2 of 20) 83851 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 23533 chr5 151081037 151081141 + 0 NA promoter-TSS (NM_001252385) promoter-TSS (NM_001252385) -1 NM_001258454 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 9355 chr14 73741599 73741701 + 0 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -17097 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 12859 chr17 64992451 64992622 + 0 NA Intergenic Intergenic -16951 NR_026903 201283 Hs.396447 NM_153032 ENSG00000214174 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 29303 chr9 77305727 77305881 + 0 NA intron (NM_001018037, intron 33 of 70) intron (NM_001018037, intron 33 of 70) -127887 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 25793 chr7 19958524 19958671 + 0 NA intron (NR_110114, intron 5 of 5) MER20|DNA|hAT-Charlie 181829 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 2843 chr1 225924206 225924310 + 0 NA promoter-TSS (NM_001271681) promoter-TSS (NM_001271681) 82 NM_013328 29920 Hs.654718 NM_013328 ENSG00000143811 PYCR2 HLD10|P5CR2 pyrroline-5-carboxylate reductase family member 2 protein-coding 9343 chr14 73228646 73228725 + 0 NA Intergenic Intergenic -8812 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN - papilin, proteoglycan like sulfated glycoprotein protein-coding 15770 chr2 70554067 70554217 + 0 NA promoter-TSS (NM_003236) promoter-TSS (NM_003236) -127 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 12190 chr17 18857948 18858106 + 0 NA promoter-TSS (NM_002767) promoter-TSS (NM_002767) -41 NM_002767 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 13268 chr18 11851315 11851409 + 0 NA promoter-TSS (NM_020412) promoter-TSS (NM_020412) -28 NM_020412 57132 Hs.656244 NM_020412 ENSG00000255112 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 30321 chr9 133449927 133450031 + 0 NA intron (NM_139026, intron 23 of 28) intron (NM_139026, intron 23 of 28) -9986 NM_001242370 11094 Hs.62003 NM_017586 ENSG00000160325 CACFD1 C9orf7|D9S2135|FLOWER calcium channel flower domain containing 1 protein-coding 5418 chr11 63974322 63974411 + 0 NA promoter-TSS (NM_004074) promoter-TSS (NM_004074) -241 NM_004074 1351 Hs.743989 NM_004074 ENSG00000176340 COX8A COX|COX8|COX8-2|COX8L|VIII|VIII-L cytochrome c oxidase subunit 8A protein-coding 4602 chr10 128011416 128011590 + 0 NA intron (NM_001323354, intron 1 of 19) intron (NM_001323354, intron 1 of 19) 13377 NM_001323354 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase, receptor type E protein-coding 14089 chr19 10749152 10749256 + 0 NA intron (NM_004945, intron 1 of 19) intron (NM_004945, intron 1 of 19) 30800 NR_030368 693223 NR_030368 ENSG00000207972 MIR638 MIRN638|hsa-mir-638 microRNA 638 ncRNA 14715 chr19 50205344 50205448 + 0 NA intron (NM_024729, intron 1 of 40) CpG 1768 NM_001145809 79784 Hs.467142 NM_024729 ENSG00000105357 MYH14 DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin myosin heavy chain 14 protein-coding 26573 chr7 90816912 90817016 + 0 NA intron (NM_012395, intron 4 of 13) intron (NM_012395, intron 4 of 13) 107148 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 11309 chr16 48611782 48611886 + 0 NA Intergenic Intergenic -1625 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 14148 chr19 12847692 12847844 + 0 NA intron (NM_014975, intron 6 of 25) CpG-13813 -4492 NR_106852 102466196 NR_106852 ENSG00000276181 MIR6794 hsa-mir-6794 microRNA 6794 ncRNA 21163 chr4 8440747 8440788 + 0 NA promoter-TSS (NM_152544) promoter-TSS (NM_152544) -38 NM_152544 152992 Hs.566191 NM_024950 ENSG00000155275 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding 22749 chr5 76763273 76763377 + 0 NA Intergenic Intergenic 47282 NM_001992 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 20417 chr3 151925967 151926071 + 0 NA intron (NR_110202, intron 1 of 3) intron (NR_110202, intron 1 of 3) 2156 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 17790 chr20 23782498 23782606 + 0 NA Intergenic Intergenic -31615 NM_001898 1469 Hs.123114 NM_001898 ENSG00000170373 CST1 - cystatin SN protein-coding 11733 chr16 81738085 81738185 + 0 NA Intergenic Intergenic -41123 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 11881 chr17 933458 933633 + 0 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 23913 NR_135633 101927727 Hs.666198 NR_135633 ENSG00000262003 LOC101927727 - uncharacterized LOC101927727 ncRNA 12972 chr17 74380787 74380819 + 0 NA Intergenic Intergenic 13297 NM_001331076 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 7990 chr13 25317881 25318035 + 0 NA intron (NM_014089, intron 6 of 15) AluJb|SINE|Alu 16430 NM_001008564 9818 Hs.507537 NM_014089 ENSG00000139496 NUP58 NUP45|NUPL1|PRO2463 nucleoporin 58 protein-coding 9774 chr14_GL000225v1_random 99334 99470 + 0 NA NA BSR/Beta|Satellite|Satellite NA NA 14655 chr19 48637568 48637673 + 0 NA promoter-TSS (NM_001352) promoter-TSS (NM_001352) -70 NM_001352 1628 Hs.414480 NM_001352 ENSG00000105516 DBP DABP D-box binding PAR bZIP transcription factor protein-coding 22085 chr4 184165407 184165511 + 0 NA intron (NM_153343, intron 1 of 7) intron (NM_153343, intron 1 of 7) 52502 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 8388 chr13 77027208 77027312 + 0 NA promoter-TSS (NM_012158) promoter-TSS (NM_012158) -64 NM_012158 26224 Hs.508284 NM_012158 ENSG00000005812 FBXL3 FBL3|FBL3A|FBXL3A F-box and leucine rich repeat protein 3 protein-coding 3667 chr10 49552338 49552442 + 0 NA Intergenic LTR23|LTR|ERV1 -12852 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 7509 chr12 99498864 99499013 + 0 NA intron (NM_152788, intron 10 of 25) intron (NM_152788, intron 10 of 25) -148812 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 13702 chr18 63320123 63320260 + 0 NA promoter-TSS (NM_000633) promoter-TSS (NM_000633) -811 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 1859 chr1 156728711 156728850 + 0 NA promoter-TSS (NM_001303095) promoter-TSS (NM_001303095) 309 NM_001142560 51093 Hs.512597 NM_015997 ENSG00000143303 RRNAD1 C1orf66|CGI-41|METTL25B ribosomal RNA adenine dimethylase domain containing 1 protein-coding 29620 chr9 96266944 96267055 + 0 NA intron (NM_000197, intron 2 of 10) HAL1|LINE|L1 35153 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 12749 chr17 57293251 57293404 + 0 NA intron (NM_170721, intron 4 of 9) intron (NM_170721, intron 4 of 9) 36314 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 22406 chr5 39074458 39074585 + 0 NA promoter-TSS (NM_001285439) promoter-TSS (NM_001285439) -113 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 20918 chr3 189766636 189766672 + 0 NA intron (NM_001329964, intron 3 of 13) intron (NM_001329964, intron 3 of 13) -23006 NM_001114980 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 17305 chr2 233974704 233974808 + 0 NA intron (NM_024080, intron 17 of 25) intron (NM_024080, intron 17 of 25) 57358 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|TRPP8 transient receptor potential cation channel subfamily M member 8 protein-coding 3782 chr10 63630180 63630327 + 0 NA Intergenic CpG -108178 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 7350 chr12 85016542 85016646 + 0 NA intron (NM_001100917, intron 7 of 8) MER44B|DNA|TcMar-Tigger 19683 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 25035 chr6 113645683 113645845 + 0 NA intron (NR_125844, intron 1 of 2) intron (NR_125844, intron 1 of 2) 4311 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 11543 chr16 68760970 68761074 + 0 NA intron (NM_004360, intron 2 of 15) intron (NM_004360, intron 2 of 15) 18506 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 25975 chr7 30564356 30564460 + 0 NA intron (NR_038889, intron 3 of 6) intron (NR_038889, intron 3 of 6) 13371 NR_038889 401320 Hs.561708 NR_038889 LOC401320 - uncharacterized LOC401320 ncRNA 26954 chr7 125253909 125254042 + 0 NA intron (NR_110183, intron 1 of 3) intron (NR_110183, intron 1 of 3) 10316 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 23993 chr6 8157911 8158045 + 0 NA Intergenic LTR49|LTR|ERV1 -55383 NM_004280 9521 Hs.602353 NM_004280 ENSG00000124802 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 22771 chr5 78615829 78615876 + 0 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 32973 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 2054 chr1 169676229 169676333 + 0 NA Intergenic Intergenic 32575 NR_029467 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 3792 chr10 67492482 67492506 + 0 NA intron (NM_001127384, intron 5 of 17) L2a|LINE|L2 -89084 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 30704 chrX 49074007 49074130 + 0 NA promoter-TSS (NM_007213) promoter-TSS (NM_007213) -23 NM_007213 11230 Hs.29595 NM_007213 ENSG00000243279 PRAF2 JM4|Yip6a PRA1 domain family member 2 protein-coding 26547 chr7 87876197 87876357 + 0 NA promoter-TSS (NM_006716) promoter-TSS (NM_006716) 48 NM_006716 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 2785 chr1 223355852 223355956 + 0 NA intron (NM_001037175, intron 2 of 5) intron (NM_001037175, intron 2 of 5) 8298 NM_017982 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 3635 chr10 45001572 45001677 + 0 NA promoter-TSS (NR_126421) promoter-TSS (NR_126421) -714 NM_001039380 220979 Hs.707791 NM_001039380 C10orf25 - chromosome 10 open reading frame 25 protein-coding 11126 chr16 22374719 22374868 + 0 NA promoter-TSS (NM_001802) promoter-TSS (NM_001802) -176 NM_001802 1039 Hs.513430 NM_001802 ENSG00000140743 CDR2 CDR62|Yo cerebellar degeneration related protein 2 protein-coding 1555 chr1 114757490 114757600 + 0 NA intron (NM_001007553, intron 1 of 19) intron (NM_001007553, intron 1 of 19) 505 NM_001242892 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 25526 chr7 830845 830920 + 0 NA intron (NM_001171945, intron 2 of 6) intron (NM_001171945, intron 2 of 6) -1623 NM_001130965 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 2870 chr1 227728248 227728250 + 0 NA promoter-TSS (NR_136654) promoter-TSS (NR_136654) 81 NM_001323933 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 4337 chr10 110304946 110305107 + 0 NA promoter-TSS (NM_005871) promoter-TSS (NM_005871) -77 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 24057 chr6 12578876 12578980 + 0 NA Intergenic Intergenic -137728 NM_001242648 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 7706 chr12 117025581 117025685 + 0 NA intron (NM_153348, intron 9 of 10) intron (NM_153348, intron 9 of 10) -38296 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 8749 chr14 24136027 24136145 + 0 NA promoter-TSS (NM_001281529) promoter-TSS (NM_001281529) -72 NM_176783 5720 Hs.75348 NM_006263 ENSG00000092010 PSME1 HEL-S-129m|IFI5111|PA28A|PA28alpha|REGalpha proteasome activator subunit 1 protein-coding 30691 chrX 48737220 48737372 + 0 NA Intergenic CpG -24454 NM_001080489 392465 Hs.437539 NM_001080489 ENSG00000171433 GLOD5 - glyoxalase domain containing 5 protein-coding 23089 chr5 119412147 119412278 + 0 NA Intergenic Intergenic -40231 NM_000414 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 20137 chr3 129794926 129795032 + 0 NA intron (NM_001128224, intron 3 of 5) intron (NM_001128224, intron 3 of 5) 85580 NM_001017395 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 22907 chr5 95712465 95712613 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR -18607 NM_014899 22836 Hs.445030 NM_014899 ENSG00000164292 RHOBTB3 - Rho related BTB domain containing 3 protein-coding 4211 chr10 100186037 100186158 + 0 NA promoter-TSS (NM_006459) promoter-TSS (NM_006459) -40 NM_001347858 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 18412 chr20 64255557 64255687 + 0 NA promoter-TSS (NM_001104925) promoter-TSS (NM_001104925) -73 NM_018257 55251 Hs.744845 NM_018257 ENSG00000203880 PCMTD2 C20orf36 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 protein-coding 1315 chr1 93079195 93079217 + 0 NA promoter-TSS (NM_001164391) promoter-TSS (NM_001164391) -29 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 10753 chr15 94231309 94231458 + 0 NA Intergenic Intergenic -66818 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 9911 chr15 39934059 39934118 + 0 NA promoter-TSS (NM_001013703) promoter-TSS (NM_001013703) -36 NM_001013703 440275 Hs.656673 NM_001013703 ENSG00000128829 EIF2AK4 GCN2|PVOD2 eukaryotic translation initiation factor 2 alpha kinase 4 protein-coding 10952 chr16 4476391 4476450 + 0 NA promoter-TSS (NM_001127204) promoter-TSS (NM_001127204) 80 NM_001127204 3163 Hs.284279 NM_002134 ENSG00000103415 HMOX2 HO-2 heme oxygenase 2 protein-coding 20893 chr3 188164526 188164662 + 0 NA intron (NM_001167672, intron 1 of 9) intron (NM_001167672, intron 1 of 9) -10506 NR_036497 339929 Hs.596639 NR_036497 ENSG00000270959 LPP-AS2 MYCLo-5|MYCLo-6 LPP antisense RNA 2 ncRNA 14840 chr19 57320392 57320493 + 0 NA promoter-TSS (NM_213598) promoter-TSS (NM_213598) -55 NM_213598 125919 Hs.202544 NM_213598 ENSG00000178229 ZNF543 - zinc finger protein 543 protein-coding 21940 chr4 156971722 156971826 + 0 NA promoter-TSS (NM_016205) promoter-TSS (NM_016205) -380 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 21103 chr4 1043689 1043824 + 0 NA Intergenic Intergenic 31292 NM_021923 53834 Hs.193326 NM_021923 ENSG00000127418 FGFRL1 FGFR5|FHFR fibroblast growth factor receptor-like 1 protein-coding 3810 chr10 68720983 68721201 + 0 NA promoter-TSS (NM_001282959) promoter-TSS (NM_001282959) -52 NM_001282960 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 19361 chr3 38164983 38165114 + 0 NA promoter-TSS (NM_005109) promoter-TSS (NM_005109) -487 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive 1 protein-coding 25768 chr7 17940475 17940579 + 0 NA promoter-TSS (NM_015132) promoter-TSS (NM_015132) -19 NM_015132 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 22602 chr5 60945053 60945192 + 0 NA promoter-TSS (NM_000082) promoter-TSS (NM_000082) -7 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 7682 chr12 113299751 113299967 + 0 NA exon (NM_024959, exon 16 of 16) exon (NM_024959, exon 16 of 16) 8336 NR_106820 102465457 NR_106820 ENSG00000274822 MIR6762 hsa-mir-6762 microRNA 6762 ncRNA 16300 chr2 128585786 128585890 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -267241 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 20571 chr3 161854409 161854585 + 0 NA Intergenic L1PBa1|LINE|L1 357689 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15 otolin 1 protein-coding 18880 chr22 37898914 37899064 + 0 NA intron (NR_039973, intron 1 of 1).4 intron (NR_039973, intron 1 of 1).4 -7159 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 23710 chr5 171757977 171758081 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -27843 NM_001289970 644994 Hs.591740 NM_001289970 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 6392 chr11 132874716 132874820 + 0 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 68869 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 28859 chr8 144950824 144950913 + 0 NA promoter-TSS (NM_006958) promoter-TSS (NM_006958) 20 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 20509 chr3 157789291 157789395 + 0 NA Intergenic L2c|LINE|L2 245999 NM_001130002 152078 Hs.259046 NM_001099777 ENSG00000174899 PQLC2L C3orf55 PQ loop repeat containing 2 like protein-coding 10008 chr15 44537040 44537171 + 0 NA promoter-TSS (NR_034171) promoter-TSS (NR_034171) 37 NM_003758 8669 Hs.404056 NM_003758 ENSG00000104131 EIF3J EIF3S1|eIF3-alpha|eIF3-p35 eukaryotic translation initiation factor 3 subunit J protein-coding 5946 chr11 100687302 100687414 + 0 NA promoter-TSS (NM_152432) promoter-TSS (NM_152432) -318 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 14331 chr19 29845095 29845211 + 0 NA Intergenic CpG 33159 NM_001322262 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 1424 chr1 101371343 101371447 + 0 NA intron (NR_126402, intron 4 of 4) intron (NR_126402, intron 4 of 4) 47558 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 11817 chr16 87487706 87487739 + 0 NA intron (NM_015144, intron 1 of 12) intron (NM_015144, intron 1 of 12) 4132 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 29598 chr9 94926192 94926327 + 0 NA intron (NM_001193329, intron 5 of 15) intron (NM_001193329, intron 5 of 15) 116297 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 14184 chr19 14496173 14496273 + 0 NA promoter-TSS (NM_005716) promoter-TSS (NM_005716) -74 NM_202494 10755 Hs.655012 NM_005716 ENSG00000123159 GIPC1 C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 GIPC PDZ domain containing family member 1 protein-coding 6198 chr11 119729125 119729340 + 0 NA promoter-TSS (NM_203285) promoter-TSS (NM_203285) -351 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 26062 chr7 36601287 36601391 + 0 NA intron (NM_001637, intron 11 of 20) intron (NM_001637, intron 11 of 20) -1219 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 20698 chr3 176939127 176939276 + 0 NA Intergenic Intergenic -122200 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 19888 chr3 112561915 112562050 + 0 NA promoter-TSS (NM_001278712) promoter-TSS (NM_001278712) -19 NM_022488 64422 Hs.477126 NM_022488 ENSG00000144848 ATG3 APG3|APG3-LIKE|APG3L|PC3-96 autophagy related 3 protein-coding 29469 chr9 87766837 87766971 + 0 NA Intergenic MER31A|LTR|ERV1 -6011 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 19557 chr3 53130426 53130506 + 0 NA promoter-TSS (NM_052859) promoter-TSS (NM_052859) -12 NM_052859 91869 Hs.631910 NM_052859 ENSG00000163933 RFT1 CDG1N RFT1 homolog protein-coding 9030 chr14 54396787 54396914 + 0 NA promoter-TSS (NM_005192) promoter-TSS (NM_005192) -18 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 28459 chr8 116755793 116755904 + 0 NA promoter-TSS (NM_003756) promoter-TSS (NM_003756) -25 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 15283 chr2 29263196 29263272 + 0 NA intron (NM_004304, intron 11 of 28) intron (NM_004304, intron 11 of 28) 147808 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 3819 chr10 69237662 69237815 + 0 NA intron (NM_025130, intron 4 of 17) intron (NM_025130, intron 4 of 17) -5248 NR_120648 101928994 Hs.562925 NR_120648 ENSG00000229261 LOC101928994 - uncharacterized LOC101928994 ncRNA 2798 chr1 223772218 223772322 + 0 NA intron (NM_001146068, intron 20 of 20) intron (NM_001146068, intron 20 of 20) 59853 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 18923 chr22 39520024 39520128 + 0 NA promoter-TSS (NM_001675) promoter-TSS (NM_001675) -483 NM_001675 468 Hs.496487 NM_001675 ENSG00000128272 ATF4 CREB-2|CREB2|TAXREB67|TXREB activating transcription factor 4 protein-coding 11091 chr16 19638699 19638803 + 0 NA intron (NM_020314, intron 20 of 30) MER44B|DNA|TcMar-Tigger -77705 NR_130967 124152 Hs.460217 NM_153208 ENSG00000174628 IQCK - IQ motif containing K protein-coding 28086 chr8 80753199 80753412 + 0 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 121476 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 15001 chr2 10658769 10658873 + 0 NA intron (NR_048552, intron 9 of 19) AluJo|SINE|Alu 31166 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 24485 chr6 37134638 37134736 + 0 NA Intergenic Intergenic -35459 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 22938 chr5 97193083 97193248 + 0 NA Intergenic L1PB1|LINE|L1 -9864 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 7543 chr12 102567280 102567384 + 0 NA Intergenic L2c|LINE|L2 -86687 NM_001111283 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 29248 chr9 73869387 73869514 + 0 NA Intergenic Intergenic -502081 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 2524 chr1 207309802 207309906 + 0 NA Intergenic L2b|LINE|L2 -11618 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 17754 chr20 22390339 22390501 + 0 NA Intergenic Intergenic 30223 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 24100 chr6 15908191 15908340 + 0 NA Intergenic Intergenic -220821 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 12363 chr17 35244583 35244687 + 0 NA intron (NM_001330183, intron 1 of 3) intron (NM_001330183, intron 1 of 3) 1568 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 28103 chr8 81721394 81721498 + 0 NA promoter-TSS (NM_001170796) promoter-TSS (NM_001170796) -142 NR_033196 79752 Hs.655453 NM_024699 ENSG00000104231 ZFAND1 - zinc finger AN1-type containing 1 protein-coding 17231 chr2 229271233 229271337 + 0 NA promoter-TSS (NM_001100818) promoter-TSS (NM_001100818) 56 NM_001330158 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 1471 chr1 109240734 109240838 + 0 NA Intergenic Intergenic -9233 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 26220 chr7 47475260 47475434 + 0 NA intron (NM_022748, intron 4 of 30) intron (NM_022748, intron 4 of 30) 106797 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 28912 chr9 6080329 6080433 + 0 NA Intergenic Intergenic -64741 NM_012416 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 21277 chr4 30950894 30951026 + 0 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -220184 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LOC102723778 - uncharacterized LOC102723778 ncRNA 12302 chr17 30824740 30824828 + 0 NA promoter-TSS (NM_015986) promoter-TSS (NM_015986) -24 NR_073118 51379 Hs.649372 NM_015986 ENSG00000176390 CRLF3 CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2 cytokine receptor like factor 3 protein-coding 17687 chr20 17968881 17969001 + 0 NA promoter-TSS (NM_014426) promoter-TSS (NM_014426) 50 NM_001310338 92667 Hs.320823 NM_052865 ENSG00000125871 MGME1 C20orf72|DDK1|MTDPS11|bA504H3.4 mitochondrial genome maintenance exonuclease 1 protein-coding 16533 chr2 159615506 159615610 + 0 NA promoter-TSS (NM_001329858) promoter-TSS (NM_001329858) 38 NM_001329858 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 12482 chr17 41496905 41497051 + 0 NA Intergenic Intergenic -7114 NM_003771 8689 Hs.248189 NM_003771 ENSG00000126337 KRT36 HA6|KRTHA6|hHa6 keratin 36 protein-coding 25459 chr6 163414002 163414146 + 0 NA promoter-TSS (NR_037593) promoter-TSS (NR_037593) -124 NR_037593 100526820 Hs.644159 NR_037593 ENSG00000270419 CAHM LINC00468 colon adenocarcinoma hypermethylated (non-protein coding) ncRNA 16968 chr2 206084487 206084591 + 0 NA intron (NM_017759, intron 1 of 10) intron (NM_017759, intron 1 of 10) 1643 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 2078 chr1 173507316 173507319 + 0 NA intron (NM_178527, intron 24 of 27) intron (NM_178527, intron 24 of 27) 29970 NM_004905 9588 Hs.120 NM_004905 ENSG00000117592 PRDX6 1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29 peroxiredoxin 6 protein-coding 12711 chr17 53722541 53722645 + 0 NA Intergenic LTR57-int|LTR|ERVL -100285 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 10475 chr15 75802157 75802261 + 0 NA Intergenic Intergenic -39894 NR_036198 100423035 NR_036198 ENSG00000261043 MIR4313 - microRNA 4313 ncRNA 30137 chr9 127336855 127337079 + 0 NA intron (NR_104591, intron 11 of 26) intron (NR_104591, intron 11 of 26) -60171 NM_001271712 29988 Hs.179522 NM_014580 ENSG00000136856 SLC2A8 GLUT8|GLUTX1 solute carrier family 2 member 8 protein-coding 29013 chr9 27573384 27573509 + 0 NA promoter-TSS (NM_018325) promoter-TSS (NM_018325) 47 NM_018325 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENNL72|FTDALS|FTDALS1 chromosome 9 open reading frame 72 protein-coding 20369 chr3 149377598 149377777 + 0 NA promoter-TSS (NR_046650) promoter-TSS (NR_046650) -91 NR_109810 100874091 Hs.549633 NR_046650 ENSG00000240541 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 30463 chrX 7252327 7252467 + 0 NA promoter-TSS (NM_001320754) promoter-TSS (NM_001320754) -76 NM_001320754 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase (microsomal), isozyme S protein-coding 25693 chr7 12686822 12686835 + 0 NA promoter-TSS (NM_001037164) promoter-TSS (NM_001037164) 1 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 8403 chr13 78659088 78659239 + 0 NA promoter-TSS (NM_024546) promoter-TSS (NM_024546) 16 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 RNF219 C13orf7 ring finger protein 219 protein-coding 17012 chr2 208638247 208638391 + 0 NA intron (NR_136588, intron 2 of 5) intron (NR_136588, intron 2 of 5) 95677 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 27015 chr7 130995744 130995877 + 0 NA intron (NR_109855, intron 2 of 4) MamTip2|DNA|hAT-Tip100 82346 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 1309 chr1 92654028 92654132 + 0 NA intron (NM_005665, intron 11 of 17) L1PB4|LINE|L1 138324 NM_005665 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 14636 chr19 48124053 48124157 + 0 NA intron (NR_135501, intron 19 of 25) intron (NR_135501, intron 19 of 25) -13253 NM_001159323 8605 Hs.631562 NM_003706 ENSG00000105499 PLA2G4C CPLA2-gamma phospholipase A2 group IVC protein-coding 19444 chr3 45200072 45200176 + 0 NA Intergenic Intergenic 26198 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 5352 chr11 61792782 61792934 + 0 NA promoter-TSS (NM_014206) promoter-TSS (NM_014206) 221 NM_004111 2237 Hs.409065 NM_004111 ENSG00000168496 FEN1 FEN-1|MF1|RAD2 flap structure-specific endonuclease 1 protein-coding 6918 chr12 45615461 45615565 + 0 NA Intergenic L3b|LINE|CR1 112408 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 8925 chr14 39432520 39432542 + 0 NA promoter-TSS (NM_203301) promoter-TSS (NM_203301) -31 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 21893 chr4 148795296 148795400 + 0 NA Intergenic Intergenic 147030 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 15034 chr2 12318588 12318616 + 0 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 119472 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 16458 chr2 150496115 150496237 + 0 NA Intergenic Intergenic -8481 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 4457 chr10 118835917 118835974 + 0 NA Intergenic Intergenic -80699 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 975 chr1 61049903 61050022 + 0 NA Intergenic Intergenic -27312 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 3605 chr10 42782573 42782760 + 0 NA 5' UTR (NM_014753, exon 1 of 23) 5' UTR (NM_014753, exon 1 of 23) 160 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1, ribosome biogenesis factor protein-coding 13002 chr17 75289430 75289522 + 0 NA promoter-TSS (NM_001126122) promoter-TSS (NM_001126122) -27 NM_001126121 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 26246 chr7 48563416 48563588 + 0 NA intron (NM_152701, intron 55 of 61) MER76|LTR|ERVL -361059 NR_003595 168448 Hs.567757 NM_152627 CDC14C CDC14B2|CDC14Bretro|CDC14CP cell division cycle 14C, pseuodgene pseudo 12524 chr17 42609532 42609636 + 0 NA promoter-TSS (NM_178126) promoter-TSS (NM_178126) -157 NM_178126 162427 Hs.632262 NM_178126 ENSG00000141699 FAM134C - family with sequence similarity 134 member C protein-coding 9820 chr15 31326547 31326637 + 0 NA promoter-TSS (NM_015995).2 promoter-TSS (NM_015995).2 -263 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 11317 chr16 49407942 49408046 + 0 NA Intergenic Intergenic 34186 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 14487 chr19 42075989 42076103 + 0 NA promoter-TSS (NM_022752) promoter-TSS (NM_022752) -92 NM_022752 64763 Hs.13323 NM_022752 ENSG00000105732 ZNF574 FP972 zinc finger protein 574 protein-coding 17095 chr2 218152868 218152972 + 0 NA Intergenic Intergenic 14073 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 26788 chr7 106346731 106346879 + 0 NA Intergenic Charlie6|DNA|hAT-Charlie -61613 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 24662 chr6 48430330 48430434 + 0 NA Intergenic Intergenic -361693 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 24496 chr6 37553779 37553883 + 0 NA Intergenic L1ME3A|LINE|L1 1591 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 14949 chr2 8681908 8682063 + 0 NA promoter-TSS (NM_002166) promoter-TSS (NM_002166) 2 NM_002166 3398 Hs.180919 NM_002166 ENSG00000115738 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2, HLH protein protein-coding 30928 chrX 107118776 107118909 + 0 NA promoter-TSS (NM_001324243) promoter-TSS (NM_001324243) -15 NM_001171080 55285 Hs.139053 NM_018301 ENSG00000089682 RBM41 - RNA binding motif protein 41 protein-coding 21977 chr4 165112861 165112956 + 0 NA promoter-TSS (NM_001100389) promoter-TSS (NM_001100389) -36 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 20391 chr3 150469716 150469828 + 0 NA Intergenic Intergenic 61437 NM_014779 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 10914 chr16 3106476 3106552 + 0 NA Intergenic CpG -6048 NM_001042428 7755 Hs.592088 NM_003456 ENSG00000122386 ZNF205 RhitH|ZNF210|Zfp13 zinc finger protein 205 protein-coding 3113 chr1 244353834 244353977 + 0 NA intron (NM_001276349, intron 1 of 3) intron (NM_001276349, intron 1 of 3) 1270 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 9300 chr14 69739677 69739742 + 0 NA Intergenic Intergenic -27378 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 9375 chr14 74713058 74713162 + 0 NA promoter-TSS (NM_015962) promoter-TSS (NM_015962) -6 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 16078 chr2 105919471 105919575 + 0 NA Intergenic Intergenic 67775 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 11425 chr16 57447329 57447468 + 0 NA promoter-TSS (NM_020312) promoter-TSS (NM_020312) -27 NM_020312 57017 Hs.513632 NM_020312 ENSG00000088682 COQ9 C16orf49|COQ10D5 coenzyme Q9 protein-coding 24125 chr6 17864301 17864357 + 0 NA intron (NM_001105568, intron 4 of 37) intron (NM_001105568, intron 4 of 37) 123294 NM_001105568 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 5701 chr11 77510284 77510421 + 0 NA Intergenic Intergenic -36289 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 PAKalpha p21 (RAC1) activated kinase 1 protein-coding 9061 chr14 55430196 55430300 + 0 NA intron (NM_199047, intron 4 of 6) intron (NM_199047, intron 4 of 6) 10297 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 14398 chr19 36850868 36850905 + 0 NA promoter-TSS (NM_001242801) promoter-TSS (NM_001242801) 0 NR_038362 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 29123 chr9 66901273 66901423 + 0 NA intron (NM_033160, intron 1 of 4) MIRb|SINE|MIR 623 NM_033160 26149 Hs.522147 NM_033160 ENSG00000274349 ZNF658 - zinc finger protein 658 protein-coding 8478 chr13 97976325 97976471 + 0 NA intron (NM_002271, intron 3 of 28) CpG 22723 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 8184 chr13 42747464 42747626 + 0 NA Intergenic Intergenic -34005 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 23082 chr5 119274462 119274576 + 0 NA intron (NM_001077654, intron 1 of 1) intron (NM_001077654, intron 1 of 1) 5827 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 151 chr1 10472497 10472664 + 0 NA promoter-TSS (NM_213566) promoter-TSS (NM_213566) -24 NM_004401 1676 Hs.484782 NM_004401 ENSG00000160049 DFFA DFF-45|DFF1|ICAD DNA fragmentation factor subunit alpha protein-coding 15570 chr2 55232248 55232366 + 0 NA promoter-TSS (NM_001177413) promoter-TSS (NM_001177413) 6 NM_152385 130162 Hs.347014 NM_152385 ENSG00000162994 CLHC1 C2orf63 clathrin heavy chain linker domain containing 1 protein-coding 28503 chr8 119051503 119051640 + 0 NA intron (NM_001324095, intron 3 of 7) intron (NM_001324095, intron 3 of 7) -15614 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 CL-34|CLL1 collectin subfamily member 10 protein-coding 18082 chr20 45254496 45254622 + 0 NA promoter-TSS (NM_003064) promoter-TSS (NM_003064) 5 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 5347 chr11 61626874 61627004 + 0 NA intron (NR_002775, intron 2 of 4) intron (NR_002775, intron 2 of 4) 11903 NR_002775 113157 Hs.502733 NR_002775 ENSG00000243742 RPLP0P2 RPLP0L2|RPLP0_3_1146 ribosomal protein lateral stalk subunit P0 pseudogene 2 pseudo 11909 chr17 2041854 2042002 + 0 NA promoter-TSS (NM_080822) promoter-TSS (NM_080822) -55 NM_080822 124641 Hs.513856 NM_080822 ENSG00000262664 OVCA2 - ovarian tumor suppressor candidate 2 protein-coding 25733 chr7 16293741 16293755 + 0 NA intron (NM_001101426, intron 5 of 9) intron (NM_001101426, intron 5 of 9) 83262 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 ISPD-AS1 - ISPD antisense RNA 1 ncRNA 21745 chr4 119300610 119300754 + 0 NA exon (NM_001170330, exon 2 of 3) exon (NM_001170330, exon 2 of 3) 131 NM_001001701 401152 Hs.173705 NM_001001701 ENSG00000164096 C4orf3 HCVFTP1 chromosome 4 open reading frame 3 protein-coding 20683 chr3 175151203 175151217 + 0 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -35968 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 19069 chr22_KI270733v1_random 168057 168211 + 0 NA Intergenic CpG -2081 NR_128714 103504728 NR_128714 ENSG00000264063 MIR3687-2 hsa-mir-3687-2 microRNA 3687-2 ncRNA 1952 chr1 162497756 162497860 + 0 NA promoter-TSS (NM_144624) promoter-TSS (NM_144624) 3 NM_144624 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 10801 chr15 99708717 99708874 + 0 NA intron (NM_001130926, intron 8 of 9) intron (NM_001130926, intron 8 of 9) 24590 NM_001284418 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 9978 chr15 42832754 42832795 + 0 NA intron (NM_173500, intron 4 of 14) Tigger7|DNA|TcMar-Tigger 88035 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 22742 chr5 75717569 75717673 + 0 NA promoter-TSS (NM_001099271) promoter-TSS (NM_001099271) -133 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 13432 chr18 35041330 35041391 + 0 NA promoter-TSS (NM_001256420) promoter-TSS (NM_001256420) 0 NM_014268 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 29040 chr9 33290874 33290996 + 0 NA intron (NM_002504, intron 1 of 23) CpG 518 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 27454 chr8 18210007 18210114 + 0 NA promoter-TSS (NM_000662) promoter-TSS (NM_000662) -43 NM_001160170 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 24284 chr6 28837429 28837615 + 0 NA Intergenic Intergenic 26155 NR_033379 401242 Hs.448285 NR_033379 ENSG00000225595 LINC01623 - long intergenic non-protein coding RNA 1623 ncRNA 27244 chr7 152025691 152025795 + 0 NA promoter-TSS (NM_001304514) promoter-TSS (NM_001304514) 69 NM_022087 63917 Hs.647109 NM_022087 ENSG00000178234 GALNT11 GALNAC-T11|GALNACT11 polypeptide N-acetylgalactosaminyltransferase 11 protein-coding 13931 chr19 3557625 3557775 + 0 NA promoter-TSS (NM_001287529) promoter-TSS (NM_001287529) -116 NM_001287529 126321 Hs.656901 NM_021731 ENSG00000161091 MFSD12 C19orf28|PP3501 major facilitator superfamily domain containing 12 protein-coding 14201 chr19 15379793 15379946 + 0 NA promoter-TSS (NM_005858) promoter-TSS (NM_005858) -68 NM_005858 10270 Hs.594496 NM_005858 ENSG00000105127 AKAP8 AKAP 95|AKAP-8|AKAP-95|AKAP95 A-kinase anchoring protein 8 protein-coding 15812 chr2 73828798 73828985 + 0 NA promoter-TSS (NM_201647) promoter-TSS (NM_201647) -25 NM_201647 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 16365 chr2 135530810 135530883 + 0 NA promoter-TSS (NM_001286568) promoter-TSS (NM_001286568) -116 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 21474 chr4 77538185 77538289 + 0 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 26484 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 18466 chr21 31344227 31344331 + 0 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 214698 NM_003253 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 9037 chr14 54659527 54659542 + 0 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 91922 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 13850 chr19 1041111 1041159 + 0 NA intron (NM_019112, intron 1 of 46) intron (NM_019112, intron 1 of 46) 1032 NM_019112 10347 Hs.134514 NM_019112 ENSG00000064687 ABCA7 ABCA-SSN|ABCX|AD9 ATP binding cassette subfamily A member 7 protein-coding 24941 chr6 99393851 99393944 + 0 NA intron (NM_017421, intron 1 of 6) CpG 309 NM_017421 51805 Hs.713623 NM_017421 ENSG00000132423 COQ3 DHHBMT|DHHBMTASE|UG0215E05|bA9819.1 coenzyme Q3, methyltransferase protein-coding 1525 chr1 112619786 112619862 + 0 NA promoter-TSS (NM_001308264) promoter-TSS (NM_001308264) 371 NM_006135 829 Hs.744974 NM_006135 ENSG00000116489 CAPZA1 CAPPA1|CAPZ|CAZ1 capping actin protein of muscle Z-line alpha subunit 1 protein-coding 10195 chr15 59276837 59276941 + 0 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 70073 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 12378 chr17 35588611 35588757 + 0 NA intron (NM_001282, intron 1 of 20) intron (NM_001282, intron 1 of 20) 1421 NM_001030006 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 beta 1 subunit protein-coding 27450 chr8 18072173 18072323 + 0 NA intron (NM_004315, intron 2 of 13) intron (NM_004315, intron 2 of 13) 12122 NM_177924 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 25314 chr6 149648699 149648723 + 0 NA promoter-TSS (NM_001204076) promoter-TSS (NM_001204076) 93 NM_007044 11104 Hs.450175 NM_007044 ENSG00000186625 KATNA1 - katanin catalytic subunit A1 protein-coding 138 chr1 9825573 9825611 + 0 NA Intergenic Intergenic -1066 NM_014944 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 16859 chr2 195657202 195657306 + 0 NA 5' UTR (NM_020342, exon 1 of 10) 5' UTR (NM_020342, exon 1 of 10) 126 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 22689 chr5 69492749 69492755 + 0 NA promoter-TSS (NM_001205254) promoter-TSS (NM_001205254) -11 NM_001205254 100506658 Hs.592605 NM_002538 ENSG00000197822 OCLN BLCPMG|PPP1R115 occludin protein-coding 22048 chr4 176988331 176988466 + 0 NA Intergenic LTR33A_|LTR|ERVL -195653 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|VRP vascular endothelial growth factor C protein-coding 724 chr1 41678668 41678845 + 0 NA intron (NM_001127714, intron 1 of 7) intron (NM_001127714, intron 1 of 7) -194073 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 23272 chr5 135887486 135887632 + 0 NA intron (NM_145282, intron 4 of 4) intron (NM_145282, intron 4 of 4) 8268 NM_000590 3578 Hs.960 NM_000590 ENSG00000145839 IL9 HP40|IL-9|P40 interleukin 9 protein-coding 25913 chr7 26910302 26910406 + 0 NA Intergenic AluJb|SINE|Alu -45611 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 3598 chr10 41889469 41889598 + 0 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 478512 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16257 chr2 123081729 123081833 + 0 NA Intergenic Intergenic -943506 NM_130773 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 30847 chrX 77910516 77910621 + 0 NA promoter-TSS (NM_000052) promoter-TSS (NM_000052) -88 NM_001282224 538 Hs.496414 NM_000052 ENSG00000165240 ATP7A DSMAX|MK|MNK|SMAX3 ATPase copper transporting alpha protein-coding 26514 chr7 84042405 84042504 + 0 NA intron (NM_006080, intron 6 of 16) intron (NM_006080, intron 6 of 16) 152447 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 21022 chr3 194672436 194672581 + 0 NA promoter-TSS (NM_018385) promoter-TSS (NM_018385) -31 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 20570 chr3 161420845 161420992 + 0 NA Intergenic L2a|LINE|L2 -5509 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 3534 chr10 32139442 32139589 + 0 NA Intergenic Intergenic -83072 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 19629 chr3 65575641 65575745 + 0 NA intron (NM_001033057, intron 2 of 22) L1ME1|LINE|L1 -318123 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 13616 chr18 55234742 55234860 + 0 NA intron (NM_001243226, intron 16 of 20) intron (NM_001243226, intron 16 of 20) 67820 NM_001243236 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 10174 chr15 57706531 57706672 + 0 NA promoter-TSS (NM_001018102) promoter-TSS (NM_001018102) 80 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 21565 chr4 88284637 88284782 + 0 NA promoter-TSS (NR_134238) promoter-TSS (NR_134238) 122 NM_152542 152926 Hs.43744 NM_152542 ENSG00000163644 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent 1K protein-coding 2667 chr1 214439593 214439758 + 0 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 112006 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 11900 chr17 1716459 1716613 + 0 NA promoter-TSS (NR_028502) promoter-TSS (NR_028502) 13 NM_001163673 124997 Hs.234572 NM_152348 ENSG00000167716 WDR81 CAMRQ2|PPP1R166|SORF-2 WD repeat domain 81 protein-coding 6945 chr12 47963530 47963644 + 0 NA promoter-TSS (NM_001143842) promoter-TSS (NM_001143842) 40 NM_024056 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 30836 chrX 74344031 74344135 + 0 NA Intergenic LTR55|LTR|ERVL? 39893 NM_203303 389874 Hs.157231 NM_203303 ENSG00000187969 ZCCHC13 CNBP2|ZNF9L zinc finger CCHC-type containing 13 protein-coding 9738 chr14 104171525 104171629 + 0 NA intron (NM_015656, intron 5 of 14) intron (NM_015656, intron 5 of 14) 32854 NM_015656 26153 Hs.134970 NM_015656 ENSG00000066735 KIF26A - kinesin family member 26A protein-coding 11183 chr16 28846338 28846464 + 0 NA promoter-TSS (NM_003321) promoter-TSS (NM_003321) 7 NM_003321 7284 Hs.12084 NM_003321 ENSG00000178952 TUFM COXPD4|EF-TuMT|EFTU|P43 Tu translation elongation factor, mitochondrial protein-coding 31123 chrX 147899863 147899967 + 0 NA Intergenic LTR59|LTR|ERV1 11902 NR_024502 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 29563 chr9 92878043 92878173 + 0 NA promoter-TSS (NM_001007101) promoter-TSS (NM_001007101) -70 NM_001261459 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 4080 chr10 92848774 92848914 + 0 NA intron (NM_001319200, intron 1 of 17) CpG 389 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 4040 chr10 88707828 88707932 + 0 NA Intergenic Intergenic -16664 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 7149 chr12 57033533 57033637 + 0 NA intron (NM_005379, intron 22 of 27) AluJr|SINE|Alu 16532 NM_005379 4640 Hs.5394 NM_005379 ENSG00000166866 MYO1A BBMI|DFNA48|MIHC|MYHL myosin IA protein-coding 30157 chr9 127771376 127771536 + 0 NA promoter-TSS (NM_001252334) promoter-TSS (NM_001252334) -87 NM_005489 10044 Hs.306412 NM_005489 ENSG00000095370 SH2D3C CHAT|NSP3|PRO34088|SHEP1 SH2 domain containing 3C protein-coding 11441 chr16 58392718 58392819 + 0 NA exon (NM_001126129, exon 1 of 4) exon (NM_001126129, exon 1 of 4) 374 NM_001126129 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 27265 chr7 155307159 155307263 + 0 NA intron (NM_198336, intron 5 of 5) intron (NM_198336, intron 5 of 5) 9439 NM_001346594 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 16918 chr2 200944857 200944961 + 0 NA intron (NM_006190, intron 5 of 17) Charlie10|DNA|hAT-Charlie 18792 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 26207 chr7 46492600 46492640 + 0 NA Intergenic Intergenic 204502 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 8508 chr13 100392866 100393016 + 0 NA intron (NM_001127692, intron 18 of 22) MIRc|SINE|MIR 88074 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 9309 chr14 70641242 70641346 + 0 NA promoter-TSS (NM_015351) promoter-TSS (NM_015351) 4 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 18304 chr20 56827414 56827518 + 0 NA Intergenic Intergenic 198164 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 16318 chr2 130797630 130797734 + 0 NA Intergenic CpG 41391 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 27051 chr7 134589665 134589805 + 0 NA Intergenic HERV17-int|LTR|ERV1 40638 NM_001080538 441282 Hs.729418 NM_001080538 ENSG00000227471 AKR1B15 AKR1B10L|AKR1B10L, AK1R1B7|AKR1R1B7 aldo-keto reductase family 1 member B15 protein-coding 446 chr1 27144492 27144585 + 0 NA intron (NM_003047, intron 1 of 11) intron (NM_003047, intron 1 of 11) 10592 NR_046474 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 27884 chr8 57055057 57055161 + 0 NA Intergenic Intergenic -61238 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 5942 chr11 100546814 100546936 + 0 NA Intergenic MER91B|DNA|hAT-Tip100 -140801 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 2181 chr1 182088172 182088321 + 0 NA Intergenic Intergenic -26534 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 9068 chr14 55721457 55721580 + 0 NA Intergenic Intergenic -44727 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 28054 chr8 77120440 77120548 + 0 NA Intergenic Intergenic -119450 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 22135 chr5 56946 57124 + 0 NA Intergenic L2b|LINE|L2 -83223 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 28625 chr8 127035890 127035938 + 0 NA Intergenic Intergenic 22760 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 19147 chr3 9947285 9947423 + 0 NA promoter-TSS (NR_046734) promoter-TSS (NR_046734) -50 NR_046734 100874032 Hs.616388 NR_046734 ENSG00000230082 PRRT3-AS1 - PRRT3 antisense RNA 1 ncRNA 15827 chr2 74441948 74442005 + 0 NA promoter-TSS (NM_001015055) promoter-TSS (NM_001015055) -43 NM_001015055 6242 Hs.192854 NM_033046 ENSG00000114993 RTKN - rhotekin protein-coding 22339 chr5 32443963 32444067 + 0 NA intron (NR_144318, intron 2 of 18) CpG 746 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 20130 chr3 129440188 129440268 + 0 NA promoter-TSS (NM_001276270) promoter-TSS (NM_001276270) -49 NM_001276272 8930 Hs.35947 NM_003925 ENSG00000129071 MBD4 MED1 methyl-CpG binding domain 4, DNA glycosylase protein-coding 17382 chr2 240136259 240136315 + 0 NA promoter-TSS (NM_138336) promoter-TSS (NM_138336) 43 NM_001163424 150678 Hs.293884 NM_138336 ENSG00000172428 COPS9 CSNAP|MYEOV2 COP9 signalosome subunit 9 protein-coding 14449 chr19 40348412 40348596 + 0 NA promoter-TSS (NM_001256441) promoter-TSS (NM_001256441) 23 NM_001256440 126526 Hs.631557 NM_178830 ENSG00000160392 C19orf47 - chromosome 19 open reading frame 47 protein-coding 18236 chr20 52923336 52923489 + 0 NA Intergenic Intergenic -48995 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 11431 chr16 57735461 57735482 + 0 NA promoter-TSS (NM_005886) promoter-TSS (NM_005886) -277 NM_005886 10300 Hs.275675 NM_005886 ENSG00000140854 KATNB1 KAT|LIS6 katanin regulatory subunit B1 protein-coding 16741 chr2 179106625 179106786 + 0 NA 3' UTR (NM_178123, exon 18 of 18) 3' UTR (NM_178123, exon 18 of 18) -56646 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 27780 chr8 48380563 48380704 + 0 NA Intergenic Intergenic -170934 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 29047 chr9 33816571 33816747 + 0 NA promoter-TSS (NM_017811) promoter-TSS (NM_017811) -525 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 8210 chr13 45168377 45168481 + 0 NA intron (NM_004128, intron 4 of 7) LTR16C|LTR|ERVL 32611 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 9167 chr14 61927652 61927756 + 0 NA Intergenic Intergenic -68119 NM_031914 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r|yt14r synaptotagmin 16 protein-coding 30785 chrX 67605419 67605523 + 0 NA intron (NM_001011645, intron 1 of 7) intron (NM_001011645, intron 1 of 7) 36630 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 30028 chr9 121074869 121074973 + 0 NA 5' UTR (NM_001317163, exon 1 of 41) 5' UTR (NM_001317163, exon 1 of 41) 253 NM_001317163 727 Hs.494997 NM_001735 ENSG00000106804 C5 C5D|C5a|C5b|CPAMD4|ECLZB complement C5 protein-coding 30652 chrX 45851758 45851897 + 0 NA promoter-TSS (NR_125365) promoter-TSS (NR_125365) -337 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LOC401585 - uncharacterized LOC401585 ncRNA 20847 chr3 185558510 185558651 + 0 NA Intergenic Intergenic -5999 NM_139248 200879 Hs.68864 NM_139248 ENSG00000163898 LIPH AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1 lipase H protein-coding 2407 chr1 202235967 202236071 + 0 NA intron (NM_001017404, intron 4 of 15) intron (NM_001017404, intron 4 of 15) 21864 NM_001017404 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 21872 chr4 145882132 145882202 + 0 NA intron (NM_001306215, intron 4 of 14) intron (NM_001306215, intron 4 of 14) 56793 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 24366 chr6 31619976 31620089 + 0 NA promoter-TSS (NM_004638).2 promoter-TSS (NM_004638).2 -641 NM_004638 7916 Hs.123239 NM_004638 ENSG00000204469 PRRC2A BAT2|D6S51|D6S51E|G2 proline rich coiled-coil 2A protein-coding 19797 chr3 105119107 105119193 + 0 NA Intergenic Tigger3b|DNA|TcMar-Tigger -247563 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 11516 chr16 67993422 67993526 + 0 NA intron (NM_022355, intron 1 of 10) CpG 817 NM_001324159 64174 Hs.372633 NM_022355 ENSG00000167261 DPEP2 MBD2 dipeptidase 2 protein-coding 15443 chr2 43227388 43227412 + 0 NA promoter-TSS (NM_006887) promoter-TSS (NM_006887) 189 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 31217 chrY 11690423 11690565 + 0 NA Intergenic Intergenic 731096 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 26327 chr7 56196429 56196533 + 0 NA Intergenic MER11A|LTR|ERVK -80084 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 2866 chr1 226940056 226940175 + 0 NA promoter-TSS (NM_020247) promoter-TSS (NM_020247) -122 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 17467 chr20 2470871 2470978 + 0 NA promoter-TSS (NM_003091) promoter-TSS (NM_003091) -71 NM_198216 6628 Hs.83753 NM_003091 ENSG00000125835 SNRPB CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B small nuclear ribonucleoprotein polypeptides B and B1 protein-coding 2443 chr1 203795461 203795565 + 0 NA promoter-TSS (NM_014827) promoter-TSS (NM_014827) -24 NM_014827 9877 Hs.532399 NM_014827 ENSG00000058673 ZC3H11A ZC3HDC11A zinc finger CCCH-type containing 11A protein-coding 11768 chr16 84368421 84368560 + 0 NA promoter-TSS (NM_001286527) promoter-TSS (NM_001286527) -33 NM_014861 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 24720 chr6 54054184 54054311 + 0 NA intron (NM_138569, intron 1 of 12) intron (NM_138569, intron 1 of 12) 35331 NM_001281746 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 19421 chr3 43286411 43286553 + 0 NA promoter-TSS (NM_001100594) promoter-TSS (NM_001100594) -30 NM_017719 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 13419 chr18 34121295 34121399 + 0 NA intron (NM_001198546, intron 2 of 9) intron (NM_001198546, intron 2 of 9) -72735 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 8146 chr13 40402498 40402627 + 0 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 78444 NR_024505 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 - long intergenic non-protein coding RNA 598 ncRNA 22898 chr5 94422894 94422998 + 0 NA intron (NM_001145678, intron 14 of 20) LTR79|LTR|ERVL 195658 NM_173665 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 30609 chrX 37872106 37872210 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -24522 NM_006520 6990 Hs.446392 NM_006520 ENSG00000165169 DYNLT3 RP3|TCTE1L|TCTEX1L dynein light chain Tctex-type 3 protein-coding 255 chr1 17298088 17298192 + 0 NA Intergenic Intergenic -10055 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 26774 chr7 105652473 105652609 + 0 NA intron (NM_001318229, intron 3 of 9) intron (NM_001318229, intron 3 of 9) 26621 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 19525 chr3 51385039 51385190 + 0 NA promoter-TSS (NM_006010) promoter-TSS (NM_006010) -123 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 17701 chr20 18314977 18315068 + 0 NA intron (NM_001283004, intron 4 of 4) intron (NM_001283004, intron 4 of 4) 26739 NM_001283008 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 5364 chr11 62472534 62472624 + 0 NA intron (NM_024060, intron 5 of 5) intron (NM_024060, intron 5 of 5) 53544 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 2230 chr1 184805643 184805798 + 0 NA intron (NM_052966, intron 11 of 13) intron (NM_052966, intron 11 of 13) -50813 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 11028 chr16 11915934 11916038 + 0 NA promoter-TSS (NM_002094) promoter-TSS (NM_002094) -18 NM_002094 2935 Hs.528780 NM_002094 ENSG00000103342 GSPT1 551G9.2|ETF3A|GST1|eRF3a G1 to S phase transition 1 protein-coding 18895 chr22 38506319 38506469 + 0 NA promoter-TSS (NM_001098504) promoter-TSS (NM_001098504) -54 NM_001098504 10521 Hs.528305 NM_006386 ENSG00000100201 DDX17 P72|RH70 DEAD-box helicase 17 protein-coding 28656 chr8 128176945 128177115 + 0 NA Intergenic Intergenic 26914 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 4740 chr11 6298724 6298828 + 0 NA Intergenic Intergenic 21734 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 3422 chr10 23422305 23422388 + 0 NA Intergenic AluJr4|SINE|Alu -16923 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 19925 chr3 114383972 114384071 + 0 NA promoter-TSS (NM_001164342) promoter-TSS (NM_001164342) -379 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 7380 chr12 88408974 88409078 + 0 NA Intergenic L2b|LINE|L2 171447 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7 KIT ligand protein-coding 14195 chr19 15073054 15073135 + 0 NA Intergenic LTR3A|LTR|ERVK -13972 NM_001004713 126370 Hs.631610 NM_001004713 ENSG00000094661 OR1I1 OR19-20|OR1I1P|OR1I1Q olfactory receptor family 1 subfamily I member 1 protein-coding 17484 chr20 3446854 3446958 + 0 NA Intergenic AluJb|SINE|Alu -24112 NM_139322 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 11171 chr16 27203895 27204025 + 0 NA promoter-TSS (NM_001145348) promoter-TSS (NM_001145348) -15 NM_001145348 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 9591 chr14 94036629 94036733 + 0 NA intron (NM_023112, intron 1 of 5) intron (NM_023112, intron 1 of 5) 10303 NM_023112 78990 Hs.278815 NM_023112 ENSG00000089723 OTUB2 C14orf137|OTB2|OTU2 OTU deubiquitinase, ubiquitin aldehyde binding 2 protein-coding 17424 chr20 380712 380847 + 0 NA promoter-TSS (NM_001301196) promoter-TSS (NM_001301196) 150 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 29727 chr9 104747577 104747762 + 0 NA 5' UTR (NM_015469, exon 1 of 6) 5' UTR (NM_015469, exon 1 of 6) 101 NM_015469 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 15008 chr2 11342818 11342922 + 0 NA intron (NM_001321643, intron 1 of 32) intron (NM_001321643, intron 1 of 32) 1715 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 23494 chr5 149632843 149632858 + 0 NA 3' UTR (NM_001001669, exon 13 of 13) 3' UTR (NM_001001669, exon 13 of 13) 51278 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 22672 chr5 68456788 68456914 + 0 NA Intergenic Intergenic 164283 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 9674 chr14 100417624 100417728 + 0 NA intron (NM_024515, intron 2 of 6) intron (NM_024515, intron 2 of 6) 41180 NM_024515 79446 Hs.497600 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 15566 chr2 54905015 54905122 + 0 NA intron (NM_001039753, intron 23 of 40) intron (NM_001039753, intron 23 of 40) 105266 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 13903 chr19 2611243 2611445 + 0 NA intron (NM_052847, intron 2 of 4) CpG -19371 NR_107004 102465838 NR_107004 ENSG00000277904 MIR7850 hsa-mir-7850 microRNA 7850 ncRNA 11175 chr16 27375038 27375142 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -27072 NM_181079 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|NILR interleukin 21 receptor protein-coding 24231 chr6 26285537 26285670 + 0 NA promoter-TSS (NM_003543) promoter-TSS (NM_003543) -104 NM_003543 8365 Hs.591790 NM_003543 ENSG00000158406 HIST1H4H H4/h|H4FH histone cluster 1 H4 family member h protein-coding 7697 chr12 116559465 116559603 + 0 NA intron (NM_001085481, intron 1 of 1) intron (NM_001085481, intron 1 of 1) 153 NM_001085481 643246 Hs.506947 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 8598 chr13 109998999 109999103 + 0 NA Intergenic Intergenic -54234 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 23895 chr6 3061689 3061736 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -2176 NM_003804 8737 Hs.519842 NM_003804 ENSG00000137275 RIPK1 RIP|RIP-1|RIP1 receptor interacting serine/threonine kinase 1 protein-coding 27525 chr8 22999404 22999508 + 0 NA promoter-TSS (NM_015178) promoter-TSS (NM_015178) -123 NM_015178 23221 Hs.372688 NM_015178 ENSG00000008853 RHOBTB2 DBC2 Rho related BTB domain containing 2 protein-coding 6487 chr12 5504000 5504062 + 0 NA Intergenic Intergenic 9899 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 11456 chr16 62136100 62136204 + 0 NA Intergenic LTR16|LTR|ERVL -99317 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 15893 chr2 84972051 84972067 + 0 NA intron (NM_020122, intron 1 of 6) CpG 951 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 4961 chr11 18457624 18457684 + 0 NA intron (NM_144972, intron 1 of 6) intron (NM_144972, intron 1 of 6) 1827 NM_144972 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 1907 chr1 160031884 160032014 + 0 NA promoter-TSS (NM_145167) promoter-TSS (NM_145167) 44 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 24599 chr6 43630038 43630148 + 0 NA promoter-TSS (NM_019096) promoter-TSS (NM_019096) 551 NM_001003690 9587 Hs.122346 NM_014628 ENSG00000124688 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 17136 chr2 220225264 220225460 + 0 NA Intergenic MIRc|SINE|MIR -318797 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 3120 chr1 244835226 244835237 + 0 NA promoter-TSS (NM_001312872) promoter-TSS (NM_001312872) -75 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A COX20, cytochrome c oxidase assembly factor protein-coding 11359 chr16 53435510 53435542 + 0 NA promoter-TSS (NM_001323611) promoter-TSS (NM_001323611) -93 NM_001323611 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 6575 chr12 9065154 9065213 + 0 NA promoter-TSS (NR_034140) promoter-TSS (NR_034140) 6 NR_137424 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 (head to head) ncRNA 3769 chr10 62818031 62818135 + 0 NA intron (NM_001136178, intron 2 of 3) CpG-2954 1084 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 14771 chr19 54017469 54017562 + 0 NA Intergenic Intergenic 25227 NM_145814 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium voltage-gated channel auxiliary subunit gamma 6 protein-coding 10533 chr15 80179050 80179125 + 0 NA intron (NM_000137, intron 11 of 13) L1ME3A|LINE|L1 26196 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 12069 chr17 8173799 8173903 + 0 NA promoter-TSS (NR_033294) promoter-TSS (NR_033294) -263 NR_033294 727676 NR_033294 ENSG00000200463 SNORD118 LCC|U8 small nucleolar RNA, C/D box 118 snoRNA 21601 chr4 97656169 97656273 + 0 NA intron (NM_174952, intron 10 of 10) Zaphod|DNA|hAT-Tip100 289295 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 19316 chr3 32469944 32470085 + 0 NA Intergenic Intergenic 32897 NM_017801 54918 Hs.380627 NM_017801 ENSG00000091317 CMTM6 CKLFSF6|PRO2219 CKLF like MARVEL transmembrane domain containing 6 protein-coding 15858 chr2 75808184 75808348 + 0 NA Intergenic Intergenic -97281 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 14116 chr19 11422351 11422488 + 0 NA intron (NM_001302453, intron 10 of 12) intron (NM_001302453, intron 10 of 12) -3077 NM_001035223 57139 Hs.375142 NM_001035223 ENSG00000205517 RGL3 - ral guanine nucleotide dissociation stimulator like 3 protein-coding 14069 chr19 10289244 10289348 + 0 NA promoter-TSS (NM_003259) promoter-TSS (NM_003259) -683 NM_003259 7087 Hs.465862 NM_003259 ENSG00000105376 ICAM5 TLCN|TLN intercellular adhesion molecule 5 protein-coding 14915 chr2 1792248 1792352 + 0 NA 3' UTR (NM_001329852, exon 24 of 24) 3' UTR (NM_001329852, exon 24 of 24) -47753 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 15200 chr2 25997882 25998006 + 0 NA Intergenic Intergenic -15370 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 26540 chr7 87316998 87317044 + 0 NA Intergenic Intergenic 28471 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 (non-protein coding) ncRNA 5989 chr11 104076608 104076730 + 0 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 40089 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 24842 chr6 81752696 81752800 + 0 NA promoter-TSS (NM_017633) promoter-TSS (NM_017633) -37 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 FAM46A C6orf37|XTP11 family with sequence similarity 46 member A protein-coding 29884 chr9 112110573 112110677 + 0 NA intron (NM_022486, intron 8 of 16) AluJr|SINE|Alu 64672 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 25849 chr7 23086109 23086231 + 0 NA Intergenic Intergenic 19533 NR_046220 100775104 NR_046220 ENSG00000230658 KLHL7-AS1 PLATAK KLHL7 antisense RNA 1 (head to head) ncRNA 9559 chr14 91510493 91510597 + 0 NA promoter-TSS (NM_001284280) promoter-TSS (NM_001284280) -65 NM_001284281 55671 Hs.533887 NM_017936 ENSG00000100796 PPP4R3A FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1 protein phosphatase 4 regulatory subunit 3A protein-coding 18034 chr20 41340048 41340225 + 0 NA promoter-TSS (NR_126051) promoter-TSS (NR_126051) -717 NR_126051 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 1520 chr1 112391000 112391107 + 0 NA Intergenic Intergenic -5125 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 24256 chr6 27375219 27375342 + 0 NA promoter-TSS (NR_024553) promoter-TSS (NR_024553) 94 NR_024553 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 24379 chr6 31814698 31814852 + 0 NA promoter-TSS (NM_005345).4 promoter-TSS (NM_005345).4 283 NM_005527 3305 Hs.690634 NM_005527 ENSG00000204390 HSPA1L HSP70-1L|HSP70-HOM|HSP70T|hum70t heat shock protein family A (Hsp70) member 1 like protein-coding 27094 chr7 139231091 139231195 + 0 NA promoter-TSS (NM_173569) promoter-TSS (NM_173569) -342 NM_173569 254048 Hs.153458 NM_173569 ENSG00000157741 UBN2 - ubinuclein 2 protein-coding 22770 chr5 78504834 78504938 + 0 NA intron (NM_005779, intron 4 of 4) intron (NM_005779, intron 4 of 4) 143939 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 7741 chr12 120087093 120087214 + 0 NA intron (NM_207311, intron 7 of 8) CpG 29686 NM_001167606 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 17487 chr20 3767869 3767990 + 0 NA promoter-TSS (NM_001039140) promoter-TSS (NM_001039140) -124 NM_001258430 54976 Hs.274422 NM_017874 ENSG00000101220 C20orf27 - chromosome 20 open reading frame 27 protein-coding 16678 chr2 173965379 173965526 + 0 NA 5' UTR (NM_003111, exon 1 of 7) 5' UTR (NM_003111, exon 1 of 7) 250 NM_001172712 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 6850 chr12 33012451 33012532 + 0 NA Intergenic MER41B|LTR|ERV1 -115645 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 12783 chr17 59155611 59155715 + 0 NA promoter-TSS (NM_001100595) promoter-TSS (NM_001100595) 164 NM_018304 55771 Hs.631750 NM_018304 ENSG00000068489 PRR11 - proline rich 11 protein-coding 23491 chr5 149606084 149606189 + 0 NA intron (NM_001001669, intron 3 of 12) intron (NM_001001669, intron 3 of 12) 24564 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 5046 chr11 27447481 27447553 + 0 NA intron (NM_018490, intron 1 of 17) MER41B|LTR|ERV1 -24214 NR_131169 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 10879 chr16 2128496 2128640 + 0 NA intron (NM_001009944, intron 1 of 45) MIRb|SINE|MIR -4551 NR_039741 100616258 NR_039741 ENSG00000265867 MIR4516 mir-4516 microRNA 4516 ncRNA 19701 chr3 93878416 93878562 + 0 NA intron (NM_000313, intron 13 of 14) intron (NM_000313, intron 13 of 14) 95592 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S (alpha) protein-coding 16168 chr2 113157207 113157311 + 0 NA Intergenic CpG -16724 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 29345 chr9 79670604 79670708 + 0 NA intron (NM_007005, intron 8 of 19) intron (NM_007005, intron 8 of 19) 98883 NR_104239 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4 transducin like enhancer of split 4 protein-coding 6005 chr11 106331301 106331405 + 0 NA Intergenic ERVL-E-int|LTR|ERVL 79946 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 6320 chr11 128290186 128290290 + 0 NA Intergenic Intergenic 232072 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 27099 chr7 139359655 139359762 + 0 NA promoter-TSS (NM_001270643) promoter-TSS (NM_001270643) -138 NM_016019 51631 Hs.731488 NM_016019 ENSG00000146963 LUC7L2 CGI-59|CGI-74|LUC7B2 LUC7 like 2, pre-mRNA splicing factor protein-coding 9971 chr15 42273400 42273554 + 0 NA promoter-TSS (NM_001301410) promoter-TSS (NM_001301410) 107 NM_001286487 25963 Hs.511138 NM_015497 ENSG00000103978 TMEM87A - transmembrane protein 87A protein-coding 29081 chr9 35732342 35732584 + 0 NA promoter-TSS (NR_106912) promoter-TSS (NR_106912) -68 NM_006289 7094 Hs.471014 NM_006289 ENSG00000137076 TLN1 ILWEQ|TLN talin 1 protein-coding 8640 chr13 113208666 113208789 + 0 NA promoter-TSS (NM_001320655) promoter-TSS (NM_001320655) 33 NM_001278514 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 28542 chr8 121776465 121776569 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger -135127 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 22211 chr5 10479279 10479474 + 0 NA Intergenic Intergenic 1339 NR_106747 102465138 NR_106747 ENSG00000277073 MIR6131 hsa-mir-6131 microRNA 6131 ncRNA 8145 chr13 40333432 40333515 + 0 NA Intergenic Intergenic -112971 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 3029 chr1 236466148 236466275 + 0 NA intron (NM_145861, intron 4 of 5) intron (NM_145861, intron 4 of 5) -52003 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 28792 chr8 142699876 142700012 + 0 NA promoter-TSS (NM_001160354) promoter-TSS (NM_001160354) -167 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 complex, locus K protein-coding 4255 chr10 102450542 102450579 + 0 NA exon (NM_024886, exon 2 of 2) exon (NM_024886, exon 2 of 2) 743 NR_038937 100505761 Hs.656457 NR_038937 ENSG00000269609 RPARP-AS1 - RPARP antisense RNA 1 ncRNA 13361 chr18 27378464 27378568 + 0 NA Intergenic Intergenic -35860 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 1879 chr1 158146871 158146975 + 0 NA Intergenic MER70B|LTR|ERVL -6283 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 19853 chr3 111071601 111071703 + 0 NA promoter-TSS (NM_001243286) promoter-TSS (NM_001243286) -107 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 2917 chr1 229508324 229508502 + 0 NA promoter-TSS (NM_018230) promoter-TSS (NM_018230) -17 NR_110630 101927478 Hs.229275 NR_110630 LOC101927478 - uncharacterized LOC101927478 ncRNA 2342 chr1 200184359 200184426 + 0 NA Intergenic Intergenic 141567 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 22785 chr5 80256175 80256245 + 0 NA promoter-TSS (NM_178276) promoter-TSS (NM_178276) -128 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 3516 chr10 30447338 30447442 + 0 NA intron (NM_001320961, intron 2 of 7) intron (NM_001320961, intron 2 of 7) 12755 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 13054 chr17 77125640 77125744 + 0 NA intron (NM_001204408, intron 3 of 19) intron (NM_001204408, intron 3 of 19) -15231 NM_001039573 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 23214 chr5 132445368 132445472 + 0 NA intron (NR_045116, intron 2 of 3) L2c|LINE|L2 34647 NR_045116 441108 Hs.658288 NM_001013717 ENSG00000197536 C5orf56 - chromosome 5 open reading frame 56 ncRNA 13620 chr18 55778932 55779086 + 0 NA Intergenic Intergenic 141190 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 11402 chr16 56625647 56625805 + 0 NA promoter-TSS (NM_175617) promoter-TSS (NM_175617) 53 NM_175617 4493 Hs.744893 NM_175617 ENSG00000169715 MT1E MT-1E|MT-IE|MT1|MTD metallothionein 1E protein-coding 29211 chr9 72441486 72441590 + 0 NA Intergenic Intergenic -76291 NM_006007 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 30520 chrX 15674869 15674973 + 0 NA promoter-TSS (NR_026551) promoter-TSS (NR_026551) 5 NR_026551 340591 Hs.732244 NR_026551 ENSG00000186312 CA5BP1 CA5BL|CA5BP|PRO2325 carbonic anhydrase 5B pseudogene 1 pseudo 17619 chr20 11892346 11892450 + 0 NA promoter-TSS (NM_001282550) promoter-TSS (NM_001282550) -95 NM_001282550 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 828 chr1 46611826 46612050 + 0 NA intron (NM_201403, intron 2 of 3) intron (NM_201403, intron 2 of 3) 3195 NM_145279 148932 Hs.632401 NM_145279 ENSG00000142961 MOB3C MOB1E|MOBKL2C MOB kinase activator 3C protein-coding 28832 chr8 144137602 144137706 + 0 NA promoter-TSS (NM_016458) promoter-TSS (NM_016458) -115 NM_016458 51236 Hs.300224 NM_016458 ENSG00000235173 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog protein-coding 19060 chr22 50582916 50583016 + 0 NA promoter-TSS (NR_027928) promoter-TSS (NR_027928) 33 NR_027928 386593 Hs.439777 NR_027928 ENSG00000254413 CHKB-CPT1B CHKL-CPT1B CHKB-CPT1B readthrough (NMD candidate) ncRNA 26638 chr7 96303202 96303404 + 0 NA intron (NR_027662, intron 1 of 16) intron (NR_027662, intron 1 of 16) 18844 NM_014251 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 3949 chr10 77873904 77873932 + 0 NA intron (NM_004747, intron 1 of 31).2 intron (NM_004747, intron 1 of 31).2 52672 NM_004747 9231 Hs.652690 NM_004747 ENSG00000151208 DLG5 LP-DLG|P-DLG5|PDLG discs large MAGUK scaffold protein 5 protein-coding 13371 chr18 28204343 28204447 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -26949 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 19284 chr3 27533950 27534071 + 0 NA Intergenic Intergenic -49590 NM_001321103 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 20987 chr3 192930708 192930812 + 0 NA Intergenic Intergenic -12599 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 6590 chr12 10205677 10205781 + 0 NA Intergenic MER74B|LTR|ERVL -7161 NM_031412 23710 Hs.524250 NM_031412 ENSG00000139112 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA type A receptor associated protein like 1 protein-coding 29520 chr9 91001184 91001326 + 0 NA Intergenic Intergenic 73877 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 6247 chr11 122856795 122856899 + 0 NA intron (NM_019604, intron 5 of 9) intron (NM_019604, intron 5 of 9) -5464 NM_001304782 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T-cell molecule protein-coding 8093 chr13 33542843 33542947 + 0 NA intron (NM_001243476, intron 3 of 17) CpG 133940 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 15891 chr2 84970654 84970723 + 0 NA promoter-TSS (NM_020122) promoter-TSS (NM_020122) -420 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 26859 chr7 115585403 115585420 + 0 NA Intergenic L1PB1|LINE|L1 -354056 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 5519 chr11 66467195 66467259 + 0 NA intron (NM_001243136, intron 1 of 5) CpG 362 NM_001243136 246330 Hs.656875 NM_145065 ENSG00000174516 PELI3 - pellino E3 ubiquitin protein ligase family member 3 protein-coding 16774 chr2 182716236 182716251 + 0 NA non-coding (NR_073365, exon 1 of 24) non-coding (NR_073365, exon 1 of 24) 202 NR_073367 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 27858 chr8 54744318 54744422 + 0 NA Intergenic LTR55|LTR|ERVL? 128303 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1, axonemal microtubule associated protein-coding 1543 chr1 113929461 113929617 + 0 NA promoter-TSS (NR_110726) promoter-TSS (NR_110726) -14 NR_110726 101928846 Hs.232534 NR_110725 ENSG00000235527 HIPK1-AS1 - HIPK1 antisense RNA 1 ncRNA 10860 chr16 1475021 1475170 + 0 NA promoter-TSS (NM_001287) promoter-TSS (NM_001287) -11 NM_001114331 1186 Hs.459649 NM_001287 ENSG00000103249 CLCN7 CLC-7|CLC7|OPTA2|OPTB4|PPP1R63 chloride voltage-gated channel 7 protein-coding 12576 chr17 45148203 45148357 + 0 NA 5' UTR (NM_006460, exon 1 of 1) 5' UTR (NM_006460, exon 1 of 1) 963 NM_006460 10614 Hs.586945 NM_006460 ENSG00000186834 HEXIM1 CLP1|EDG1|HIS1|MAQ1 hexamethylene bisacetamide inducible 1 protein-coding 25038 chr6 115882274 115882378 + 0 NA Intergenic Intergenic -156405 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 8366 chr13 75705511 75705647 + 0 NA intron (NM_001306080, intron 1 of 30) intron (NM_001306080, intron 1 of 30) -54842 NM_001330583 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 16793 chr2 187448312 187448457 + 0 NA promoter-TSS (NM_001271751) promoter-TSS (NM_001271751) -90 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 25181 chr6 134823056 134823160 + 0 NA Intergenic Intergenic 127014 NM_170771 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 6333 chr11 129192325 129192429 + 0 NA promoter-TSS (NM_001142685) promoter-TSS (NM_001142685) -179 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 1402 chr1 100038010 100038158 + 0 NA promoter-TSS (NM_033055) promoter-TSS (NM_033055) -149 NM_033055 64645 Hs.124156 NM_033055 ENSG00000156875 MFSD14A HIAT1 major facilitator superfamily domain containing 14A protein-coding 23945 chr6 6467439 6467543 + 0 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -121210 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 14896 chr2 264668 264905 + 0 NA promoter-TSS (NM_004300) promoter-TSS (NM_004300) -43 NR_104223 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 29553 chr9 92680849 92680953 + 0 NA Intergenic Intergenic -10636 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 18231 chr20 52340176 52340280 + 0 NA Intergenic MLT1J|LTR|ERVL-MaLR -148243 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 25329 chr6 150069155 150069259 + 0 NA promoter-TSS (NM_024518) promoter-TSS (NM_024518) -60 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 22421 chr5 40385639 40385838 + 0 NA Intergenic Intergenic -294192 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 12989 chr17 75035030 75035075 + 0 NA intron (NR_110835, intron 2 of 7) CpG 2485 NR_110835 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 23955 chr6 6969935 6970056 + 0 NA Intergenic Intergenic -137602 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 23855 chr6 692778 692792 + 0 NA intron (NR_073064, intron 1 of 29) CpG 356 NR_073064 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 17951 chr20 36746134 36746285 + 0 NA promoter-TSS (NM_022477) promoter-TSS (NM_022477) -71 NM_022477 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 10453 chr15 74906785 74906936 + 0 NA promoter-TSS (NM_001321920) promoter-TSS (NM_001321920) 34 NM_020447 57184 Hs.367690 NM_020447 ENSG00000178761 FAM219B C15orf17 family with sequence similarity 219 member B protein-coding 16161 chr2 112836849 112836991 + 0 NA promoter-TSS (NM_000576) promoter-TSS (NM_000576) -141 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 7771 chr12 121296587 121296754 + 0 NA promoter-TSS (NM_172226) promoter-TSS (NM_172226) 83 NM_172226 10645 Hs.297343 NM_006549 ENSG00000110931 CAMKK2 CAMKK|CAMKKB calcium/calmodulin dependent protein kinase kinase 2 protein-coding 1841 chr1 156126287 156126334 + 0 NA intron (NM_001257374, intron 1 of 12) intron (NM_001257374, intron 1 of 12) 193 NM_001257374 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 30767 chrX 56995490 56995594 + 0 NA promoter-TSS (NR_027139) promoter-TSS (NR_027139) 13 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 6651 chr12 13255804 13255999 + 0 NA Intergenic Intergenic 59233 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 10260 chr15 63504282 63504431 + 0 NA promoter-TSS (NR_046342) promoter-TSS (NR_046342) -155 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 4216 chr10 100342510 100342614 + 0 NA Intergenic Intergenic -4453 NM_005063 6319 Hs.558396 NM_005063 ENSG00000099194 SCD FADS5|MSTP008|SCD1|SCDOS|hSCD1 stearoyl-CoA desaturase protein-coding 18561 chr21 42450176 42450212 + 0 NA Intergenic Intergenic 46160 NM_001286506 89765 Hs.661069 NM_080860 ENSG00000160188 RSPH1 CT79|RSP44|RSPH10A|TSA2|TSGA2 radial spoke head 1 homolog protein-coding 15097 chr2 17539124 17539251 + 0 NA Intergenic Intergenic -1353 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 15777 chr2 71129848 71130002 + 0 NA promoter-TSS (NM_005791) promoter-TSS (NM_005791) 339 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 19912 chr3 113746273 113746377 + 0 NA promoter-TSS (NM_025146) promoter-TSS (NM_025146) -26 NM_025146 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 4134 chr10 96129921 96130052 + 0 NA promoter-TSS (NM_001278525) promoter-TSS (NM_001278525) -70 NM_001278525 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 7298 chr12 77122356 77122460 + 0 NA Intergenic MER44C|DNA|TcMar-Tigger -56828 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 5920 chr11 96122866 96122970 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -198711 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 689 chr1 39955047 39955182 + 0 NA promoter-TSS (NM_001136493) promoter-TSS (NM_001136493) 2 NM_032793 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 3129 chr1 245156561 245156725 + 0 NA exon (NM_018012, exon 2 of 15) exon (NM_018012, exon 2 of 15) 1658 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 5994 chr11 104776593 104776697 + 0 NA Intergenic Intergenic 122025 NR_034070 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 27664 chr8 33485038 33485236 + 0 NA promoter-TSS (NM_032509) promoter-TSS (NM_032509) -30 NM_032509 84549 Hs.583805 NM_032509 ENSG00000198042 MAK16 MAK16L|RBM13 MAK16 homolog protein-coding 21931 chr4 154550371 154550509 + 0 NA promoter-TSS (NM_001201564) promoter-TSS (NM_001201564) -7 NM_002669 5356 Hs.249996 NM_002669 ENSG00000171566 PLRG1 Cwc1|PRL1|PRP46|PRPF46|TANGO4 pleiotropic regulator 1 protein-coding 29472 chr9 87974600 87974612 + 0 NA 5' UTR (NM_001039803, exon 1 of 8) 5' UTR (NM_001039803, exon 1 of 8) 174 NM_001039803 23552 Hs.522274 NM_012119 ENSG00000156345 CDK20 CCRK|CDCH|P42|PNQALRE cyclin dependent kinase 20 protein-coding 5231 chr11 46159958 46160062 + 0 NA Intergenic Intergenic -11945 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 4413 chr10 114877163 114877280 + 0 NA intron (NM_001135051, intron 16 of 16) intron (NM_001135051, intron 16 of 16) 55477 NM_020940 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 10310 chr15 66481138 66481242 + 0 NA intron (NM_002755, intron 5 of 10) intron (NM_002755, intron 5 of 10) 15844 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 10501 chr15 78438018 78438127 + 0 NA promoter-TSS (NM_001320942) promoter-TSS (NM_001320942) -104 NM_001320941 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRP2|IRP2AD iron responsive element binding protein 2 protein-coding 14042 chr19 9010246 9010350 + 0 NA Intergenic Intergenic -28956 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 12434 chr17 39687894 39687978 + 0 NA promoter-TSS (NM_001289938) promoter-TSS (NM_001289938) 134 NM_033419 93210 Hs.462971 NM_033419 ENSG00000161395 PGAP3 AGLA546|CAB2|PERLD1|PP1498|hCOS16 post-GPI attachment to proteins 3 protein-coding 1725 chr1 151946449 151946561 + 0 NA Intergenic Intergenic -36620 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 12448 chr17 40021551 40021689 + 0 NA intron (NM_001330211, intron 24 of 26) intron (NM_001330211, intron 24 of 26) 4789 NR_106944 102466757 NR_106944 ENSG00000008838 MIR6884 hsa-mir-6884 microRNA 6884 ncRNA 30973 chrX 110394813 110394917 + 0 NA intron (NM_001171689, intron 2 of 7) intron (NM_001171689, intron 2 of 7) -24192 NM_020769 57529 Hs.201071 NM_020769 ENSG00000243978 RGAG1 MAR9|MART9 retrotransposon gag domain containing 1 protein-coding 6978 chr12 49742128 49742251 + 0 NA exon (NM_001098576, exon 1 of 10) exon (NM_001098576, exon 1 of 10) 380 NM_001098576 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 24202 chr6 25175360 25175464 + 0 NA Intergenic MER21A|LTR|ERVL -37020 NR_027626 8418 Hs.484918 NR_002174 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 5827 chr11 88709542 88709646 + 0 NA intron (NM_000842, intron 3 of 8) intron (NM_000842, intron 3 of 8) 205018 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 15373 chr2 38076699 38076736 + 0 NA promoter-TSS (NM_000104) promoter-TSS (NM_000104) -536 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 11924 chr17 2634749 2634894 + 0 NA intron (NM_000430, intron 1 of 10) intron (NM_000430, intron 1 of 10) 41192 NM_000430 5048 Hs.77318 NM_000430 ENSG00000007168 PAFAH1B1 LIS1|LIS2|MDCR|MDS|NudF|PAFAH platelet activating factor acetylhydrolase 1b regulatory subunit 1 protein-coding 23042 chr5 113513622 113513726 + 0 NA promoter-TSS (NM_001345975) promoter-TSS (NM_001345975) 12 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL YTH domain containing 2 protein-coding 4600 chr10 127923162 127923199 + 0 NA intron (NM_001323356, intron 1 of 19) intron (NM_001323356, intron 1 of 19) 16119 NM_001316676 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase, receptor type E protein-coding 25611 chr7 5781594 5781748 + 0 NA promoter-TSS (NM_207116) promoter-TSS (NM_207116) 59 NM_207111 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 12307 chr17 31052249 31052376 + 0 NA Intergenic L3|LINE|CR1 42113 NR_039886 100616266 NR_039886 ENSG00000265444 MIR4733 - microRNA 4733 ncRNA 22188 chr5 7869066 7869212 + 0 NA promoter-TSS (NM_024091) promoter-TSS (NM_024091) 35 NR_134481 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 17847 chr20 31661708 31661752 + 0 NA Intergenic Intergenic 23842 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 4858 chr11 13098220 13098324 + 0 NA Intergenic Intergenic 88849 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 10092 chr15 51600277 51600381 + 0 NA intron (NM_015263, intron 1 of 42) MER54A|LTR|ERVL 22441 NM_015263 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 PEPNS|RC3 Dmx like 2 protein-coding 29757 chr9 106583902 106584006 + 0 NA Intergenic Intergenic -16974 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 2834 chr1 225700375 225700479 + 0 NA Intergenic Intergenic -47284 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 24009 chr6 10237742 10237918 + 0 NA Intergenic Intergenic -174488 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 12170 chr17 17840300 17840367 + 0 NA Intergenic CpG -3322 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 14980 chr2 9843620 9843724 + 0 NA intron (NM_005680, intron 1 of 14) CpG 230 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 13444 chr18 36129265 36129387 + 0 NA promoter-TSS (NM_012319) promoter-TSS (NM_012319) 68 NM_012319 25800 Hs.79136 NM_012319 ENSG00000141424 SLC39A6 LIV-1|ZIP6 solute carrier family 39 member 6 protein-coding 30567 chrX 23515174 23515264 + 0 NA Intergenic LTR16C|LTR|ERVL -152309 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 4850 chr11 12674331 12674511 + 0 NA promoter-TSS (NM_021961) promoter-TSS (NM_021961) -1 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 15276 chr2 28976724 28976810 + 0 NA Intergenic Intergenic -4531 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 FAM179A - family with sequence similarity 179 member A protein-coding 26236 chr7 48110386 48110490 + 0 NA Intergenic Intergenic 21184 NM_001287430 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 13168 chr17 82418525 82418627 + 0 NA promoter-TSS (NM_024648) promoter-TSS (NM_024648) 61 NM_024648 79701 Hs.187505 NM_024648 ENSG00000181396 OGFOD3 C17orf101 2-oxoglutarate and iron dependent oxygenase domain containing 3 protein-coding 30948 chrX 108036442 108036557 + 0 NA Intergenic Intergenic -8471 NM_182607 340547 Hs.177164 NM_182607 ENSG00000101842 VSIG1 1700062D20Rik|GPA34|dJ889N15.1 V-set and immunoglobulin domain containing 1 protein-coding 1900 chr1 159900496 159900600 + 0 NA promoter-TSS (NM_012337) promoter-TSS (NM_012337) -432 NM_012337 25790 Hs.647705 NM_012337 ENSG00000213085 CFAP45 CCDC19|NESG1 cilia and flagella associated protein 45 protein-coding 20055 chr3 124592747 124592899 + 0 NA intron (NM_001322999, intron 1 of 14) intron (NM_001322999, intron 1 of 14) 8164 NM_001323001 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 27982 chr8 67692936 67693040 + 0 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 53397 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 24807 chr6 76877026 76877130 + 0 NA Intergenic Intergenic 586944 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 21928 chr4 154083257 154083361 + 0 NA Intergenic Intergenic -294233 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 7495 chr12 98503381 98503516 + 0 NA intron (NR_038383, intron 1 of 3) intron (NR_038383, intron 1 of 3) 407 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LOC643770 - uncharacterized LOC643770 ncRNA 954 chr1 58932969 58933073 + 0 NA Intergenic Intergenic -87455 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 12581 chr17 45197977 45198123 + 0 NA Intergenic Intergenic -23875 NM_005892 752 Hs.100217 NM_005892 ENSG00000184922 FMNL1 C17orf1|C17orf1B|FHOD4|FMNL|KW-13 formin like 1 protein-coding 4524 chr10 122019603 122019700 + 0 NA intron (NM_206862, intron 1 of 22) intron (NM_206862, intron 1 of 22) 30477 NM_206861 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 28562 chr8 123072493 123072640 + 0 NA promoter-TSS (NM_001145088) promoter-TSS (NM_001145088) -53 NM_001330606 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 21751 chr4 119730257 119730361 + 0 NA Intergenic Intergenic 74206 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 801 chr1 45500085 45500238 + 0 NA promoter-TSS (NR_033296) promoter-TSS (NR_033296) -23 NM_001330540 25974 Hs.13024 NM_015506 ENSG00000132763 MMACHC cblC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria protein-coding 25720 chr7 14836683 14836825 + 0 NA intron (NM_145695, intron 1 of 23) intron (NM_145695, intron 1 of 23) 4696 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 28414 chr8 108468937 108469064 + 0 NA intron (NM_014673, intron 5 of 10) L2c|LINE|L2 25417 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 26396 chr7 73667827 73667918 + 0 NA promoter-TSS (NM_001077621) promoter-TSS (NM_001077621) 28 NM_001077621 155382 Hs.647037 NM_152560 ENSG00000176428 VPS37D WBSCR24 VPS37D, ESCRT-I subunit protein-coding 17857 chr20 31951989 31952108 + 0 NA promoter-TSS (NM_030815) promoter-TSS (NM_030815) 32 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 10577 chr15 82809471 82809638 + 0 NA promoter-TSS (NM_001080435) promoter-TSS (NM_001080435) -74 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WAS protein homolog associated with actin, golgi membranes and microtubules protein-coding 24457 chr6 36196499 36196551 + 0 NA promoter-TSS (NM_015695) promoter-TSS (NM_015695) -248 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 10149 chr15 56047512 56047616 + 0 NA Intergenic Intergenic -53818 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding 30372 chr9 136901539 136901702 + 0 NA intron (NM_021138, intron 4 of 10) intron (NM_021138, intron 4 of 10) 14887 NR_039697 100616480 NR_039697 ENSG00000266507 MIR4479 - microRNA 4479 ncRNA 26678 chr7 99325758 99325975 + 0 NA promoter-TSS (NM_001190996) promoter-TSS (NM_001190996) -7 NM_001190996 10552 Hs.124126 NM_006409 ENSG00000241685 ARPC1A Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L actin related protein 2/3 complex subunit 1A protein-coding 19131 chr3 9175550 9175792 + 0 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) -16822 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 8165 chr13 41194310 41194414 + 0 NA 5' UTR (NM_032138, exon 1 of 1) 5' UTR (NM_032138, exon 1 of 1) 213 NM_032138 84078 Hs.63841 NM_032138 ENSG00000120696 KBTBD7 - kelch repeat and BTB domain containing 7 protein-coding 5680 chr11 75814866 75814894 + 0 NA promoter-TSS (NM_003369) promoter-TSS (NM_003369) -83 NR_144531 100506113 Hs.720913 NR_144531 LOC100506113 - uncharacterized LOC100506113 ncRNA 13897 chr19 2476025 2476152 + 0 NA promoter-TSS (NM_015675) promoter-TSS (NM_015675) -37 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 30556 chrX 21974024 21974128 + 0 NA intron (NM_004595, intron 4 of 10) intron (NM_004595, intron 4 of 10) 33503 NM_001258423 6611 Hs.724874 NM_004595 ENSG00000102172 SMS MRSR|SPMSY|SRS|SpS spermine synthase protein-coding 18049 chr20 43666975 43667129 + 0 NA promoter-TSS (NM_001278610) promoter-TSS (NM_001278610) 33 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 29464 chr9 87547881 87547924 + 0 NA intron (NM_001288729, intron 2 of 25) MLT2D|LTR|ERVL 49367 NM_001288729 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK death associated protein kinase 1 protein-coding 24645 chr6 47180747 47180910 + 0 NA Intergenic HERVL-int|LTR|ERVL 129119 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 17610 chr20 11387284 11387495 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -114006 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 14053 chr19 9675062 9675141 + 0 NA promoter-TSS (NM_001130031) promoter-TSS (NM_001130031) -1 NM_001130032 54811 Hs.371107 NM_017656 ENSG00000171466 ZNF562 - zinc finger protein 562 protein-coding 1563 chr1 115524322 115524442 + 0 NA Intergenic Intergenic -117571 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 10925 chr16 3365042 3365151 + 0 NA Intergenic CpG 7187 NM_001190476 100463285 Hs.639648 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2-like 4 protein-coding 24754 chr6 63572403 63572548 + 0 NA 5' UTR (NM_003463, exon 1 of 6) 5' UTR (NM_003463, exon 1 of 6) 463 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 12903 chr17 68564785 68564830 + 0 NA intron (NM_017565, intron 1 of 10) intron (NM_017565, intron 1 of 10) -6380 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A, golgi associated secretory pathway pseudokinase protein-coding 5845 chr11 92956031 92956087 + 0 NA Intergenic Intergenic -13564 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 19854 chr3 111151554 111151701 + 0 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 79459 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 1800 chr1 155001121 155001244 + 0 NA Intergenic CpG -1448 NR_049765 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding 19588 chr3 57803734 57803871 + 0 NA intron (NM_007159, intron 1 of 20) intron (NM_007159, intron 1 of 20) 46546 NM_001304420 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 1717 chr1 151548855 151548959 + 0 NA intron (NM_001126337, intron 1 of 11) intron (NM_001126337, intron 1 of 11) 3111 NR_030280 693139 NR_030280 ENSG00000207606 MIR554 MIRN554|hsa-mir-554 microRNA 554 ncRNA 4349 chr10 110641348 110641452 + 0 NA Intergenic Intergenic -2997 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 9171 chr14 63039990 63040094 + 0 NA intron (NM_172375, intron 1 of 9) intron (NM_172375, intron 1 of 9) 5196 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 1634 chr1 145885844 145885990 + 0 NA promoter-TSS (NM_001280799) promoter-TSS (NM_001280799) -51 NM_144698 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 20090 chr3 127074994 127075062 + 0 NA Intergenic Intergenic 86434 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 14781 chr19 54190777 54190931 + 0 NA promoter-TSS (NM_001146056).7 promoter-TSS (NM_001146056).7 123 NM_001282332 79042 Hs.15580 NM_024075 ENSG00000170892 TSEN34 LENG5|PCH2C|SEN34|SEN34L tRNA splicing endonuclease subunit 34 protein-coding 1848 chr1 156338299 156338451 + 0 NA promoter-TSS (NM_001304817) promoter-TSS (NM_001304817) 40 NM_005998 7203 Hs.491494 NM_005998 ENSG00000163468 CCT3 CCT-gamma|CCTG|PIG48|TCP-1-gamma|TRIC5 chaperonin containing TCP1 subunit 3 protein-coding 17958 chr20 37095666 37095770 + 0 NA intron (NM_183404, intron 1 of 20) CpG 497 NM_001323282 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 4882 chr11 14075220 14075250 + 0 NA intron (NM_006108, intron 3 of 15) MIRb|SINE|MIR 112598 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 13935 chr19 3710478 3710620 + 0 NA intron (NM_001267560, intron 1 of 20) intron (NM_001267560, intron 1 of 20) 2212 NM_001267560 27134 Hs.25527 NM_014428 ENSG00000105289 TJP3 ZO-3|ZO3 tight junction protein 3 protein-coding 4706 chr11 3379102 3379252 + 0 NA promoter-TSS (NR_040083) promoter-TSS (NR_040083) 45 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 8288 chr13 51674417 51674568 + 0 NA intron (NM_052950, intron 2 of 11) intron (NM_052950, intron 2 of 11) 90144 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 16146 chr2 112481116 112481227 + 0 NA promoter-TSS (NM_153712) promoter-TSS (NM_153712) -995 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 17625 chr20 12415058 12415162 + 0 NA Intergenic MamSINE1|SINE|tRNA-RTE 497245 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 5793 chr11 86244419 86244523 + 0 NA promoter-TSS (NM_001308007) promoter-TSS (NM_001308007) 87 NM_003797 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 2486 chr1 205563937 205564049 + 0 NA Intergenic Intergenic -4991 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 28556 chr8 122780262 122780306 + 0 NA Intergenic CpG -1378 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 26623 chr7 94658467 94658585 + 0 NA intron (NM_001172437, intron 1 of 1) intron (NM_001172437, intron 1 of 1) 2201 NM_001184962 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3 paternally expressed 10 protein-coding 22691 chr5 69517891 69517905 + 0 NA intron (NM_001205255, intron 2 of 6) intron (NM_001205255, intron 2 of 6) 13721 NM_001205255 100506658 Hs.592605 NM_002538 ENSG00000197822 OCLN BLCPMG|PPP1R115 occludin protein-coding 2317 chr1 198449390 198449533 + 0 NA Intergenic Intergenic 91484 NM_001320218 127124 Hs.127743 NM_133262 ENSG00000151418 ATP6V1G3 ATP6G3|Vma10 ATPase H+ transporting V1 subunit G3 protein-coding 16068 chr2 105455195 105455321 + 0 NA Intergenic Intergenic -16485 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 13288 chr18 12991234 12991377 + 0 NA promoter-TSS (NM_032142) promoter-TSS (NM_032142) -57 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 15321 chr2 32165735 32165856 + 0 NA promoter-TSS (NM_001330476) promoter-TSS (NM_001330476) -46 NM_001193515 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 22079 chr4 183504557 183504661 + 0 NA promoter-TSS (NR_033995) promoter-TSS (NR_033995) -94 NR_033995 389247 Hs.385787 NR_033995 LOC389247 - uncharacterized LOC389247 ncRNA 11575 chr16 70346795 70346939 + 0 NA promoter-TSS (NM_001320525) promoter-TSS (NM_001320525) 38 NM_001320525 55308 Hs.656037 NM_018332 ENSG00000168872 DDX19A DDX19-DDX19L|DDX19L DEAD-box helicase 19A protein-coding 27580 chr8 26383239 26383371 + 0 NA promoter-TSS (NR_144550) promoter-TSS (NR_144550) 298 NM_004331 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 26741 chr7 102363655 102363797 + 0 NA promoter-TSS (NR_038967) promoter-TSS (NR_038967) -93 NM_001347879 100289561 Hs.406395 NM_001242713 LOC100289561 - uncharacterized LOC100289561 protein-coding 922 chr1 55639313 55639417 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR 413724 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 30958 chrX 109271109 109271269 + 0 NA Intergenic Intergenic 210867 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 2741 chr1 220528095 220528188 + 0 NA promoter-TSS (NM_001286129) promoter-TSS (NM_001286129) -42 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 9195 chr14 64117792 64117896 + 0 NA intron (NM_182914, intron 66 of 115) MER44B|DNA|TcMar-Tigger -22719 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 14683 chr19 49363567 49363695 + 0 NA promoter-TSS (NM_001197302) promoter-TSS (NM_001197302) -99 NM_001197302 27120 Hs.515855 NM_014419 ENSG00000104901 DKKL1 CT34|SGY|SGY-1|SGY1 dickkopf like acrosomal protein 1 protein-coding 12361 chr17 35242379 35242528 + 0 NA promoter-TSS (NM_144975) promoter-TSS (NM_144975) -583 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 3456 chr10 25016956 25017081 + 0 NA promoter-TSS (NM_145010) promoter-TSS (NM_145010) 439 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 22941 chr5 97838286 97838390 + 0 NA Intergenic Intergenic 333642 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 1086 chr1 67883267 67883371 + 0 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -49847 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 9384 chr14 75069571 75069764 + 0 NA promoter-TSS (NR_126394) promoter-TSS (NR_126394) 90 NM_001042430 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 17180 chr2 224039600 224039704 + 0 NA promoter-TSS (NM_001136528) promoter-TSS (NM_001136528) -333 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 28046 chr8 74602060 74602164 + 0 NA intron (NR_033830, intron 1 of 5) MER41B|LTR|ERV1 2246 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 8721 chr14 23071566 23071718 + 0 NA promoter-TSS (NM_001164817) promoter-TSS (NM_001164817) -72 NM_001164817 22985 Hs.124490 NM_014977 ENSG00000100813 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 10843 chr16 622355 622492 + 0 NA intron (NM_021168, intron 3 of 5) CpG -8589 NM_053284 117166 Hs.345818 NM_053284 ENSG00000127578 WFIKKN1 C16orf12|RJD2|WFDC20A|WFIKKN WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 protein-coding 15239 chr2 27628104 27628208 + 0 NA promoter-TSS (NM_001145047) promoter-TSS (NM_001145047) -492 NM_001145047 11321 Hs.18259 NM_007266 ENSG00000198522 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 7532 chr12 101697737 101697846 + 0 NA 5' UTR (NM_020244, exon 1 of 9) 5' UTR (NM_020244, exon 1 of 9) 152 NM_020244 56994 Hs.293077 NM_020244 ENSG00000111666 CHPT1 CPT|CPT1 choline phosphotransferase 1 protein-coding 9178 chr14 63266298 63266402 + 0 NA intron (NM_020663, intron 1 of 4) MER4D|LTR|ERV1 52529 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone beta 5 protein-coding 13976 chr19 5346092 5346196 + 0 NA Intergenic Intergenic -5341 NM_130855 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase, receptor type S protein-coding 5839 chr11 92278077 92278167 + 0 NA Intergenic Intergenic -73974 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 4488 chr10 119737918 119738055 + 0 NA intron (NM_014937, intron 1 of 19) intron (NM_014937, intron 1 of 19) 11939 NM_014937 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 3070 chr1 241007872 241007953 + 0 NA intron (NM_002924, intron 3 of 17) L2|LINE|L2 -124360 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 15316 chr2 31729832 31729884 + 0 NA Intergenic L1MA4|LINE|L1 -148887 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 30641 chrX 43654848 43655002 + 0 NA promoter-TSS (NM_000240) promoter-TSS (NM_000240) 18 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 15087 chr2 16665778 16665882 + 0 NA promoter-TSS (NM_030797) promoter-TSS (NM_030797) 36 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 13515 chr18 47150279 47150293 + 0 NA intron (NM_032124, intron 1 of 6) CpG 214 NM_032124 84064 Hs.465041 NM_032124 ENSG00000167220 HDHD2 3110052N05Rik|HEL-S-301 haloacid dehalogenase like hydrolase domain containing 2 protein-coding 2850 chr1 226127940 226128047 + 0 NA Intergenic Intergenic 58729 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 24633 chr6 46993937 46994097 + 0 NA Intergenic L2|LINE|L2 -39079 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 27896 chr8 58842188 58842292 + 0 NA intron (NM_014729, intron 4 of 8) MLT2B2|LTR|ERVL -182395 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 23858 chr6 1063826 1063959 + 0 NA intron (NR_027116, intron 1 of 3) intron (NR_027116, intron 1 of 3) 37440 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 657 chr1 38027241 38027345 + 0 NA Intergenic Intergenic 14581 NM_016037 51118 Hs.472038 NM_016037 ENSG00000183520 UTP11 CGI-94|CGI94|UTP11L UTP11, small subunit processome component homolog (S. cerevisiae) protein-coding 27602 chr8 27617107 27617211 + 0 NA Intergenic L3b|LINE|CR1 -2348 NM_001831 1191 Hs.436657 NM_001831 ENSG00000120885 CLU AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 clusterin protein-coding 18504 chr21 35147596 35147677 + 0 NA Intergenic Intergenic -98338 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 22540 chr5 55172194 55172298 + 0 NA TTS (NR_031572) TTS (NR_031572) 107 NR_031572 100313923 NR_031572 ENSG00000251856 MIR449C mir-449c microRNA 449c ncRNA 20076 chr3 126081777 126081987 + 0 NA intron (NM_001008485, intron 1 of 11) intron (NM_001008485, intron 1 of 11) 2409 NM_017836 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 5616 chr11 71453028 71453175 + 0 NA promoter-TSS (NM_018161) promoter-TSS (NM_018161) -70 NM_018161 55191 Hs.556986 NM_018161 ENSG00000172890 NADSYN1 - NAD synthetase 1 protein-coding 14372 chr19 35628794 35628928 + 0 NA promoter-TSS (NM_024321) promoter-TSS (NM_024321) -155 NM_001319113 79171 Hs.5086 NM_024321 ENSG00000126254 RBM42 - RNA binding motif protein 42 protein-coding 21778 chr4 125523050 125523154 + 0 NA Intergenic LTR1F2|LTR|ERV1 15843 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 29432 chr9 85940875 85941016 + 0 NA promoter-TSS (NM_001321881) promoter-TSS (NM_001321881) -197 NM_001321881 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 503 chr1 29709979 29710089 + 0 NA Intergenic Intergenic 327578 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 7811 chr12 122888480 122888679 + 0 NA intron (NM_024667, intron 1 of 3) intron (NM_024667, intron 1 of 3) 7586 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B, ESCRT-I subunit protein-coding 5769 chr11 85665056 85665215 + 0 NA promoter-TSS (NR_028024) promoter-TSS (NR_028024) 3 NR_028027 58487 Hs.535319 NM_021212 ENSG00000137504 CREBZF SMILE|ZF CREB/ATF bZIP transcription factor protein-coding 4069 chr10 91880505 91880647 + 0 NA Intergenic Intergenic 28925 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 25479 chr6 166997805 166997969 + 0 NA promoter-TSS (NR_037504) promoter-TSS (NR_037504) 25 NR_037504 100500857 NR_037504 ENSG00000265828 MIR3939 mir-3939 microRNA 3939 ncRNA 10685 chr15 90191106 90191258 + 0 NA promoter-TSS (NM_001324031) promoter-TSS (NM_001324031) -775 NM_001324031 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 29954 chr9 115263157 115263275 + 0 NA intron (NM_017418, intron 2 of 7) L2c|LINE|L2 121398 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 21817 chr4 138308533 138308637 + 0 NA Intergenic Intergenic -1126 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 21081 chr3 197627766 197627915 + 0 NA promoter-TSS (NR_003266) promoter-TSS (NR_003266) 41 NR_003266 220729 Hs.478854 NR_003266 ENSG00000214135 LOC220729 - succinate dehydrogenase complex flavoprotein subunit A pseudogene pseudo 19623 chr3 63913019 63913123 + 0 NA intron (NM_000333, intron 3 of 12) intron (NM_000333, intron 3 of 12) 14672 NM_001177387 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7 ataxin 7 protein-coding 28267 chr8 97990289 97990386 + 0 NA intron (NM_001317748, intron 6 of 17) L1ME1|LINE|L1 51880 NR_002581 26775 Hs.684855 NR_002581 ENSG00000207067 SNORA72 RNU72|U72 small nucleolar RNA, H/ACA box 72 snoRNA 23509 chr5 150318809 150318913 + 0 NA Intergenic L2a|LINE|L2 -15899 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 20792 chr3 183254260 183254281 + 0 NA intron (NM_032047, intron 1 of 1) CpG 1026 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 1996 chr1 165827462 165827597 + 0 NA promoter-TSS (NM_012474) promoter-TSS (NM_012474) 34 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 16503 chr2 157246446 157246611 + 0 NA Intergenic Intergenic -11070 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 17561 chr20 7010656 7010762 + 0 NA Intergenic MER41B|LTR|ERV1 242611 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 25079 chr6 122029015 122029205 + 0 NA Intergenic Intergenic -370441 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 4695 chr11 2400574 2400784 + 0 NA promoter-TSS (NM_001297659) promoter-TSS (NM_001297659) 191 NM_005706 10078 Hs.523424 NM_005706 ENSG00000184281 TSSC4 - tumor suppressing subtransferable candidate 4 protein-coding 11357 chr16 53373422 53373535 + 0 NA promoter-TSS (NR_119378) promoter-TSS (NR_119378) -15 NR_119378 102723373 Hs.569678 NR_119378 ENSG00000261804 LOC102723373 - uncharacterized LOC102723373 ncRNA 31194 chrX 154596530 154596634 + 0 NA Intergenic Intergenic 11428 NM_139250 246100 Hs.534310 NM_139250 ENSG00000268651 CTAG1A CT6.1|ESO1|LAGE-2|LAGE2A|NY-ESO-1 cancer/testis antigen 1A protein-coding 6143 chr11 117929449 117929553 + 0 NA promoter-TSS (NM_001206789) promoter-TSS (NM_001206789) -48 NM_001077263 84000 Hs.266308 NM_032046 ENSG00000137747 TMPRSS13 MSP|MSPL|MSPS|TMPRSS11 transmembrane protease, serine 13 protein-coding 23930 chr6 4603351 4603527 + 0 NA Intergenic MIRc|SINE|MIR -7126 NR_122107 497048 Hs.591355 NM_001011540 KU-MEL-3 - uncharacterized LOC497048 ncRNA 22039 chr4 176270774 176270878 + 0 NA Intergenic Intergenic -1604 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 5285 chr11 57799101 57799246 + 0 NA intron (NM_001085458, intron 6 of 20) intron (NM_001085458, intron 6 of 20) 37411 NM_001085467 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 10651 chr15 88913337 88913441 + 0 NA promoter-TSS (NM_001310320) promoter-TSS (NM_001310320) 80 NM_001310319 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 11583 chr16 70715345 70715449 + 0 NA intron (NM_018052, intron 14 of 18) L2b|LINE|L2 -29346 NM_138383 92154 Hs.432387 NM_138383 ENSG00000132613 MTSS1L ABBA|ABBA-1|ABBA1 MTSS1L, I-BAR domain containing protein-coding 26842 chr7 113086531 113086561 + 0 NA promoter-TSS (NM_001146266) promoter-TSS (NM_001146266) -59 NM_001146267 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 24958 chr6 105373005 105373109 + 0 NA intron (NM_002726, intron 5 of 14) MLT1H|LTR|ERVL-MaLR 30067 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 19961 chr3 118472742 118472802 + 0 NA Intergenic Intergenic -168996 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 1114 chr1 70459911 70460005 + 0 NA Intergenic Intergenic 48740 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 21029 chr3 194871651 194871797 + 0 NA Intergenic Intergenic 163303 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 3657 chr10 48306530 48306607 + 0 NA promoter-TSS (NM_001278547) promoter-TSS (NM_001278547) -71 NM_139046 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 16932 chr2 202034044 202034197 + 0 NA promoter-TSS (NM_003507) promoter-TSS (NM_003507) -467 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 25703 chr7 13414917 13415021 + 0 NA Intergenic Intergenic 571545 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 11409 chr16 56851114 56851158 + 0 NA Intergenic Intergenic -7382 NR_029680 406930 NR_029680 ENSG00000207649 MIR138-2 MIRN138-2|mir-138-2 microRNA 138-2 ncRNA 15056 chr2 14493038 14493223 + 0 NA Intergenic Intergenic -92172 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 2277 chr1 193105368 193105428 + 0 NA promoter-TSS (NM_197962) promoter-TSS (NM_197962) 80 NM_197962 51022 Hs.458283 NM_016066 ENSG00000023572 GLRX2 CGI-133|GRX2 glutaredoxin 2 protein-coding 27831 chr8 53286838 53286942 + 0 NA Intergenic LTR33|LTR|ERVL -35193 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 2353 chr1 200674517 200674645 + 0 NA intron (NR_110787, intron 1 of 2) intron (NR_110787, intron 1 of 2) -4583 NM_001320181 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 31151 chrX 151397014 151397157 + 0 NA promoter-TSS (NM_001017980) promoter-TSS (NM_001017980) -100 NM_001017980 203547 Hs.58633 NM_001017980 ENSG00000160131 VMA21 MEAX|XMEA VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein-coding 5834 chr11 91947380 91947484 + 0 NA Intergenic Intergenic -404664 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 29996 chr9 117487713 117487817 + 0 NA Intergenic Intergenic -72726 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 3059 chr1 239814385 239814489 + 0 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 85435 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 8031 chr13 28659014 28659116 + 0 NA promoter-TSS (NM_015932) promoter-TSS (NM_015932) 61 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|UMP1 proteasome maturation protein protein-coding 17555 chr20 6883026 6883187 + 0 NA Intergenic Intergenic 115008 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 12652 chr17 49887280 49887490 + 0 NA Intergenic Intergenic -39368 NM_001077504 255061 Hs.652130 NM_170685 ENSG00000176358 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 (hemokinin) protein-coding 5243 chr11 47194379 47194483 + 0 NA Intergenic Intergenic -7972 NM_001184974 29763 Hs.334639 NM_016223 ENSG00000165912 PACSIN3 SDPIII protein kinase C and casein kinase substrate in neurons 3 protein-coding 30909 chrX 104618639 104618654 + 0 NA intron (NM_017416, intron 1 of 10) L1PA15-16|LINE|L1 52331 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 22094 chr4 184649311 184649442 + 0 NA promoter-TSS (NM_001345901) promoter-TSS (NM_001345901) 99 NM_032991 836 Hs.141125 NM_004346 ENSG00000164305 CASP3 CPP32|CPP32B|SCA-1 caspase 3 protein-coding 4538 chr10 122746539 122746656 + 0 NA Intergenic Intergenic -10097 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 19958 chr3 117997589 117997693 + 0 NA Intergenic CpG -644127 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 11395 chr16 56356497 56356667 + 0 NA 3' UTR (NM_020988, exon 9 of 9) 3' UTR (NM_020988, exon 9 of 9) 68413 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 12588 chr17 45371753 45371952 + 0 NA Intergenic CpG 53794 NM_199282 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 3591 chr10 38094205 38094341 + 0 NA promoter-TSS (NM_001324258) promoter-TSS (NM_001324258) -63 NM_001324262 7587 Hs.292575 NM_003421 ENSG00000075407 ZNF37A KOX21|ZNF37 zinc finger protein 37A protein-coding 29796 chr9 108185022 108185126 + 0 NA Intergenic Intergenic 670921 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 9566 chr14 92470290 92470394 + 0 NA intron (NM_153646, intron 12 of 16) intron (NM_153646, intron 12 of 16) -43439 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 21949 chr4 158723419 158723523 + 0 NA promoter-TSS (NM_005038) promoter-TSS (NM_005038) -71 NM_005038 5481 Hs.183958 NM_005038 ENSG00000171497 PPID CYP-40|CYPD peptidylprolyl isomerase D protein-coding 14070 chr19 10315901 10316089 + 0 NA promoter-TSS (NM_001031734) promoter-TSS (NM_001031734) 20 NM_001031734 112812 Hs.654865 NM_080665 ENSG00000267673 FDX1L FDX2 ferredoxin 1 like protein-coding 10066 chr15 50137445 50137549 + 0 NA Intergenic Intergenic -18275 NM_024837 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 16491 chr2 156332737 156332887 + 0 NA promoter-TSS (NM_006186) promoter-TSS (NM_006186) -37 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 21831 chr4 139665696 139665800 + 0 NA promoter-TSS (NM_001204368) promoter-TSS (NM_001204368) -20 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 19945 chr3 115975537 115975641 + 0 NA intron (NM_002338, intron 3 of 6) intron (NM_002338, intron 3 of 6) 352285 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 21305 chr4 39638949 39638991 + 0 NA promoter-TSS (NM_001317896) promoter-TSS (NM_001317896) 28 NM_174921 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 21058 chr3 196651016 196651120 + 0 NA intron (NM_198565, intron 1 of 2) intron (NM_198565, intron 1 of 2) 11372 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 29130 chr9 69054288 69054392 + 0 NA intron (NM_001161706, intron 3 of 4) intron (NM_001161706, intron 3 of 4) 18777 NM_001161706 2395 Hs.20685 NM_000144 ENSG00000165060 FXN CyaY|FA|FARR|FRDA|X25 frataxin protein-coding 9836 chr15 33022675 33022779 + 0 NA intron (NM_001277313, intron 6 of 20) L1MEi|LINE|L1 45305 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 29177 chr9 71285265 71285388 + 0 NA Intergenic Intergenic -163728 NM_001007471 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 14734 chr19 50992077 50992137 + 0 NA Intergenic Intergenic -8043 NM_001207053 5650 Hs.151254 NM_005046 ENSG00000169035 KLK7 PRSS6|SCCE|hK7 kallikrein related peptidase 7 protein-coding 29915 chr9 113580808 113580846 + 0 NA promoter-TSS (NM_001282922) promoter-TSS (NM_001282922) -50 NM_001282922 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 25061 chr6 117448899 117449003 + 0 NA Intergenic L1MB7|LINE|L1 -23096 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 7136 chr12 56360305 56360320 + 0 NA promoter-TSS (NM_005419) promoter-TSS (NM_005419) -59 NM_005419 6773 Hs.530595 NM_005419 ENSG00000170581 STAT2 IMD44|ISGF-3|P113|STAT113 signal transducer and activator of transcription 2 protein-coding 19567 chr3 53891915 53892066 + 0 NA promoter-TSS (NM_021237) promoter-TSS (NM_021237) 25 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 30541 chrX 19883921 19884025 + 0 NA intron (NM_031892, intron 1 of 17) MER90a|LTR|ERV1 3653 NM_031892 30011 Hs.726365 NM_031892 ENSG00000147010 SH3KBP1 CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18 SH3 domain containing kinase binding protein 1 protein-coding 10413 chr15 72231250 72231342 + 0 NA 5' UTR (NM_001206798, exon 1 of 11) 5' UTR (NM_001206798, exon 1 of 11) 328 NM_001206796 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 16786 chr2 186544444 186544587 + 0 NA Intergenic Intergenic -45548 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 6600 chr12 11171136 11171272 + 0 NA promoter-TSS (NM_001271592) promoter-TSS (NM_001271592) 23 NM_001271592 100129361 Hs.521817 NM_001271592 ENSG00000256537 SMIM10L1 - small integral membrane protein 10 like 1 protein-coding 20786 chr3 182754125 182754293 + 0 NA Intergenic LTR78|LTR|ERV1 -39294 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 8869 chr14 35404790 35404894 + 0 NA promoter-TSS (NM_020529) promoter-TSS (NM_020529) -88 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 3077 chr1 241608734 241608873 + 0 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 27127 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like, Rab escort protein 2 protein-coding 17257 chr2 230781575 230781801 + 0 NA intron (NM_001130850, intron 2 of 8) intron (NM_001130850, intron 2 of 8) 68140 NM_001130849 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 3433 chr10 24256089 24256243 + 0 NA intron (NM_001098500, intron 3 of 18) intron (NM_001098500, intron 3 of 18) -19519 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 10039 chr15 47812501 47812601 + 0 NA intron (NR_120336, intron 3 of 4) intron (NR_120336, intron 3 of 4) 33685 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 30248 chr9 129884478 129884649 + 0 NA Intergenic Intergenic 14958 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 24350 chr6 30908069 30908121 + 0 NA promoter-TSS (NM_001517) promoter-TSS (NM_001517) -105 NM_001517 2968 Hs.485070 NM_001517 ENSG00000213780 GTF2H4 P52|TFB2|TFIIH general transcription factor IIH subunit 4 protein-coding 9201 chr14 64540578 64540646 + 0 NA promoter-TSS (NR_110550) promoter-TSS (NR_110550) 144 NM_021979 3306 Hs.432648 NM_021979 ENSG00000126803 HSPA2 HSP70-2|HSP70-3 heat shock protein family A (Hsp70) member 2 protein-coding 14619 chr19 47484225 47484347 + 0 NA promoter-TSS (NM_001291296) promoter-TSS (NM_001291296) 4 NR_038452 100505681 Hs.657320 NR_038452 ENSG00000268061 NAPA-AS1 - NAPA antisense RNA 1 ncRNA 15493 chr2 46915903 46916007 + 0 NA promoter-TSS (NM_001171506) promoter-TSS (NM_001171506) -87 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 23424 chr5 145495875 145495979 + 0 NA Intergenic Intergenic 339442 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 27297 chr7 158818585 158818669 + 0 NA intron (NM_020728, intron 1 of 21) intron (NM_020728, intron 1 of 21) 11001 NM_020728 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 24325 chr6 30556571 30556720 + 0 NA promoter-TSS (NM_001077497) promoter-TSS (NM_001077497) -64 NM_001077497 80742 Hs.118354 NM_025263 ENSG00000204576 PRR3 CAT56 proline rich 3 protein-coding 17623 chr20 12395582 12395686 + 0 NA Intergenic Intergenic 477769 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 21429 chr4 70705642 70705700 + 0 NA intron (NM_001130709, intron 1 of 11) CpG 734 NM_001130709 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 15313 chr2 31430238 31430342 + 0 NA Intergenic Intergenic -15545 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 17543 chr20 6418881 6418985 + 0 NA Intergenic Intergenic -7799 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility candidate 20 (non-protein coding) ncRNA 8025 chr13 27826591 27826740 + 0 NA Intergenic Intergenic 34022 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 11632 chr16 74813266 74813349 + 0 NA Intergenic Intergenic -38476 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 13563 chr18 49849797 49849999 + 0 NA non-coding (NR_117096, exon 4 of 4) non-coding (NR_117096, exon 4 of 4) 35875 NR_117096 103091864 Hs.646459 NR_117096 ENSG00000267322 SNHG22 SCARNA17|SCARNA17HG small nucleolar RNA host gene 22 ncRNA 7197 chr12 62260988 62261092 + 0 NA TTS (NR_106740) TTS (NR_106740) 681 NR_106740 102465133 NR_106740 ENSG00000135655 MIR6125 hsa-mir-6125|mir-6125 microRNA 6125 ncRNA 20602 chr3 169085963 169086067 + 0 NA intron (NM_004991, intron 16 of 16) intron (NM_004991, intron 16 of 16) 60290 NM_001105077 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 16785 chr2 186486063 186486177 + 0 NA promoter-TSS (NM_018471) promoter-TSS (NM_018471) -38 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 27593 chr8 27325509 27325585 + 0 NA promoter-TSS (NM_173176) promoter-TSS (NM_173176) -17 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 3715 chr10 58335793 58335897 + 0 NA intron (NM_003338, intron 1 of 6) intron (NM_003338, intron 1 of 6) 866 NM_001204880 7321 Hs.129683 NM_003338 ENSG00000072401 UBE2D1 E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A ubiquitin conjugating enzyme E2 D1 protein-coding 25109 chr6 125274150 125274294 + 0 NA Intergenic LTR18A|LTR|ERVL 27914 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 29181 chr9 71509138 71509242 + 0 NA Intergenic Intergenic 259694 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 TMEM2 - transmembrane protein 2 protein-coding 1495 chr1 110407658 110407815 + 0 NA promoter-TSS (NR_102697) promoter-TSS (NR_102697) -73 NR_102697 101410535 Hs.559121 NR_102697 LAMTOR5-AS1 - LAMTOR5 antisense RNA 1 ncRNA 14347 chr19 33041327 33041447 + 0 NA intron (NM_033103, intron 2 of 14) intron (NM_033103, intron 2 of 14) 23531 NM_033103 85415 Hs.466435 NM_033103 ENSG00000131941 RHPN2 P76RBE|RHOBP rhophilin Rho GTPase binding protein 2 protein-coding 27779 chr8 48370323 48370427 + 0 NA Intergenic Intergenic -181192 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 22856 chr5 89584373 89584466 + 0 NA Intergenic Intergenic 432301 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 30539 chrX 19343623 19343727 + 0 NA promoter-TSS (NM_000284) promoter-TSS (NM_000284) -218 NM_001173455 5160 Hs.530331 NM_000284 ENSG00000131828 PDHA1 PDHA|PDHAD|PDHCE1A|PHE1A pyruvate dehydrogenase (lipoamide) alpha 1 protein-coding 24160 chr6 19860612 19860755 + 0 NA Intergenic Intergenic 23313 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 5055 chr11 27934940 27935088 + 0 NA Intergenic Intergenic -121801 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 24837 chr6 80454413 80454517 + 0 NA Intergenic Intergenic 347855 NM_001318975 594 Hs.654441 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 18477 chr21 32728034 32728046 + 0 NA promoter-TSS (NM_203446) promoter-TSS (NM_203446) 0 NM_203446 8867 Hs.473632 NM_003895 ENSG00000159082 SYNJ1 INPP5G|PARK20 synaptojanin 1 protein-coding 23906 chr6 3382414 3382501 + 0 NA intron (NM_001286456, intron 3 of 3) intron (NM_001286456, intron 3 of 3) 62556 NR_104448 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 1919 chr1 160826633 160826737 + 0 NA intron (NM_002348, intron 9 of 9) intron (NM_002348, intron 9 of 9) 30611 NM_001033667 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 2756 chr1 221612638 221612742 + 0 NA Intergenic Intergenic 124210 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 31177 chrX 153972782 153972826 + 0 NA 5' UTR (NM_003492, exon 1 of 2) 5' UTR (NM_003492, exon 1 of 2) 264 NM_003492 8269 Hs.23119 NM_003492 ENSG00000177854 TMEM187 CXorf12|DXS9878E|ITBA1 transmembrane protein 187 protein-coding 30490 chrX 11887350 11887454 + 0 NA Intergenic MER83C|LTR|ERV1 127786 NM_006800 10943 Hs.655288 NM_006800 ENSG00000005302 MSL3 MSL3L1 male-specific lethal 3 homolog (Drosophila) protein-coding 15207 chr2 26274235 26274336 + 0 NA intron (NM_000183, intron 6 of 15) intron (NM_000183, intron 6 of 15) 29537 NM_001281512 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit protein-coding 15090 chr2 16915591 16915660 + 0 NA Intergenic HERVL-int|LTR|ERVL -249759 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 23180 chr5 130520373 130520440 + 0 NA Intergenic Intergenic 615576 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 5277 chr11 57679544 57679648 + 0 NA intron (NM_015457, intron 2 of 11) intron (NM_015457, intron 2 of 11) 11594 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 7229 chr12 65004435 65004539 + 0 NA Intergenic Intergenic 117079 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 14004 chr19 6460595 6460749 + 0 NA promoter-TSS (NM_024103) promoter-TSS (NM_024103) -902 NM_024103 79085 Hs.356231 NM_024103 ENSG00000125648 SLC25A23 APC2|MCSC2|SCaMC-3 solute carrier family 25 member 23 protein-coding 2004 chr1 166876434 166876509 + 0 NA promoter-TSS (NM_053053) promoter-TSS (NM_053053) -54 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 13988 chr19 5904387 5904491 + 0 NA promoter-TSS (NM_001193375) promoter-TSS (NM_001193375) -402 NM_001017921 400673 Hs.620821 NM_001017921 ENSG00000187650 VMAC - vimentin-type intermediate filament associated coiled-coil protein protein-coding 21883 chr4 147597096 147597200 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -20240 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 6128 chr11 116693677 116693817 + 0 NA Intergenic Intergenic 54325 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LOC101929011 - uncharacterized LOC101929011 ncRNA 26768 chr7 105012610 105012714 + 0 NA non-coding (NR_024586, exon 1 of 1) non-coding (NR_024586, exon 1 of 1) 1479 NR_024586 100216545 Hs.631150 NR_024586 KMT2E-AS1 - KMT2E antisense RNA 1 (head to head) ncRNA 22216 chr5 10581493 10581564 + 0 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 17205 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 21440 chr4 73259171 73259268 + 0 NA promoter-TSS (NM_015574) promoter-TSS (NM_015574) -421 NM_032217 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 702 chr1 40692096 40692235 + 0 NA promoter-TSS (NR_024567) promoter-TSS (NR_024567) 96 NR_024567 100130557 Hs.233458 NR_024567 NFYC-AS1 0808y08y NFYC antisense RNA 1 ncRNA 9506 chr14 88346386 88346490 + 0 NA Intergenic Intergenic -19526 NM_021161 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 21365 chr4 52862218 52862362 + 0 NA promoter-TSS (NM_023940) promoter-TSS (NM_023940) -38 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 6896 chr12 42758909 42758948 + 0 NA Intergenic Intergenic 66712 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LOC105369739 - uncharacterized LOC105369739 ncRNA 2297 chr1 197035127 197035231 + 0 NA Intergenic AluSx|SINE|Alu 32088 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 25068 chr6 118776992 118777107 + 0 NA Intergenic L1MB7|LINE|L1 -5659 NR_037662 100287632 Hs.334026 NR_037662 LOC100287632 - selenoprotein K pseudogene pseudo 28169 chr8 89901969 89902065 + 0 NA promoter-TSS (NM_001126111) promoter-TSS (NM_001126111) 149 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 28537 chr8 121348894 121348998 + 0 NA Intergenic Intergenic -290400 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 26631 chr7 95691580 95691711 + 0 NA Intergenic Intergenic -80861 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 25673 chr7 10973220 10973363 + 0 NA promoter-TSS (NM_014660) promoter-TSS (NM_014660) -581 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 9750 chr14 105025020 105025124 + 0 NA Intergenic Intergenic -3984 NM_017955 55038 Hs.34045 NM_017955 ENSG00000170779 CDCA4 HEPP|SEI-3/HEPP cell division cycle associated 4 protein-coding 17170 chr2 223760913 223761044 + 0 NA intron (NR_110906, intron 3 of 3) intron (NR_110906, intron 3 of 3) 76624 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 sigma 3 subunit protein-coding 27566 chr8 25261720 25261846 + 0 NA intron (NM_024940, intron 2 of 51) L1ME2|LINE|L1 77060 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 17678 chr20 17506260 17506307 + 0 NA intron (NM_001278608, intron 7 of 9) MLT1E2|LTR|ERVL-MaLR 25086 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 17152 chr2 221997249 221997353 + 0 NA Intergenic Intergenic -300846 NM_153038 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 protein-coding 21088 chr3 197791419 197791494 + 0 NA exon (NM_032773, exon 1 of 19) exon (NM_032773, exon 1 of 19) 230 NM_032773 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 22547 chr5 55438506 55438655 + 0 NA intron (NM_003711, intron 4 of 5) intron (NM_003711, intron 4 of 5) 70346 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 357 chr1 23619812 23619906 + 0 NA Intergenic Intergenic -7475 NR_027042 259283 Hs.523369 NM_001348075 ENSG00000197880 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 25774 chr7 18420870 18421001 + 0 NA intron (NM_001321896, intron 1 of 12) L2a|LINE|L2 -74775 NM_001321894 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 3236 chr10 5684607 5684717 + 0 NA promoter-TSS (NR_135800) promoter-TSS (NR_135800) -176 NM_001321783 54906 Hs.610717 NM_017782 ENSG00000108021 FAM208B C10orf18|bA318E3.2 family with sequence similarity 208 member B protein-coding 20974 chr3 192395644 192395748 + 0 NA intron (NM_004113, intron 2 of 5) L2c|LINE|L2 13353 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 28548 chr8 122463989 122464093 + 0 NA intron (NR_131202, intron 2 of 3) MER21C|LTR|ERVL 104603 NR_131202 105375734 Hs.628341 NR_131202 LOC105375734 - uncharacterized LOC105375734 ncRNA 21838 chr4 140523970 140524105 + 0 NA promoter-TSS (NM_153702) promoter-TSS (NM_153702) -121 NM_153702 255520 Hs.450105 NM_153702 ENSG00000179387 ELMOD2 9830169G11Rik ELMO domain containing 2 protein-coding 7106 chr12 55829609 55829760 + 0 NA promoter-TSS (NM_032364) promoter-TSS (NM_032364) -48 NM_032364 85406 Hs.709320 NM_032364 ENSG00000135392 DNAJC14 DNAJ|DRIP78|HDJ3|LIP6 DnaJ heat shock protein family (Hsp40) member C14 protein-coding 12145 chr17 16536897 16537001 + 0 NA Intergenic Intergenic 32263 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 24534 chr6 41636893 41637043 + 0 NA promoter-TSS (NM_001300804) promoter-TSS (NM_001300804) -209 NM_001300804 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 455 chr1 27490160 27490253 + 0 NA promoter-TSS (NM_001201404) promoter-TSS (NM_001201404) -19 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family member 2 protein-coding 17781 chr20 23358078 23358218 + 0 NA promoter-TSS (NR_109884) promoter-TSS (NR_109884) -21 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 24681 chr6 52065751 52065855 + 0 NA intron (NM_138694, intron 12 of 66) intron (NM_138694, intron 12 of 66) 21822 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|TIGM1 polycystic kidney and hepatic disease 1 (autosomal recessive) protein-coding 28161 chr8 89258732 89258836 + 0 NA Intergenic Intergenic 498927 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 7371 chr12 87509575 87509679 + 0 NA Intergenic L2a|LINE|L2 178888 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 5395 chr11 62881426 62881525 + 0 NA promoter-TSS (NR_037193) promoter-TSS (NR_037193) -224 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 30854 chrX 78653322 78653426 + 0 NA Intergenic Intergenic 5954 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 ZCCHC5 Mar3|Mart3|ZHC5 zinc finger CCHC-type containing 5 protein-coding 28258 chr8 97644137 97644278 + 0 NA promoter-TSS (NM_178812) promoter-TSS (NM_178812) 28 NM_178812 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 2612 chr1 211655330 211655430 + 0 NA TTS (NR_131925) TTS (NR_131925) 15572 NR_131925 105748977 Hs.553186 NR_131925 LINC01693 - long intergenic non-protein coding RNA 1693 ncRNA 16388 chr2 138294571 138294675 + 0 NA Intergenic Intergenic 192739 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 19593 chr3 58215041 58215089 + 0 NA Intergenic L2c|LINE|L2 -4062 NM_001256560 1776 Hs.476453 NM_004944 ENSG00000163687 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease 1 like 3 protein-coding 17491 chr20 3811758 3811927 + 0 NA intron (NR_109859, intron 3 of 3) intron (NR_109859, intron 3 of 3) 3348 NR_109859 101929125 Hs.744106 NR_109859 ENSG00000275491 LINC01730 - long intergenic non-protein coding RNA 1730 ncRNA 12884 chr17 67366289 67366393 + 0 NA intron (NM_001316341, intron 1 of 12) CpG 286 NM_174871 5718 Hs.4295 NM_002816 ENSG00000197170 PSMD12 Rpn5|p55 proteasome 26S subunit, non-ATPase 12 protein-coding 22667 chr5 68215531 68215600 + 0 NA promoter-TSS (NM_181523) promoter-TSS (NM_181523) -191 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 5537 chr11 66892288 66892455 + 0 NA intron (NM_001040716, intron 3 of 22) intron (NM_001040716, intron 3 of 22) 15498 NM_022172 5091 Hs.89890 NM_000920 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 18703 chr22 24703119 24703174 + 0 NA Intergenic Intergenic -43999 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 8006 chr13 26838051 26838239 + 0 NA Intergenic Intergenic -77360 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 2272 chr1 192766394 192766498 + 0 NA Intergenic Intergenic -42593 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G-protein signaling 2 protein-coding 23600 chr5 157665786 157665890 + 0 NA intron (NM_001308165, intron 2 of 5) MIRb|SINE|MIR 5642 NM_001308165 11063 Hs.529462 NM_007017 ENSG00000039600 SOX30 - SRY-box 30 protein-coding 7414 chr12 91529926 91530030 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -346854 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 2646 chr1 212791809 212791903 + 0 NA promoter-TSS (NM_001297737) promoter-TSS (NM_001297737) 28 NM_001146170 128387 Hs.530538 NM_001042552 ENSG00000203705 TATDN3 - TatD DNase domain containing 3 protein-coding 10 chr1 1079586 1079734 + 0 NA Intergenic Intergenic -5353 NM_001205252 401934 Hs.568137 NM_001205252 ENSG00000237330 RNF223 - ring finger protein 223 protein-coding 8211 chr13 45206620 45206724 + 0 NA intron (NM_004128, intron 4 of 7) MIRb|SINE|MIR -5632 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 27989 chr8 69582932 69582942 + 0 NA intron (NM_015170, intron 6 of 22) intron (NM_015170, intron 6 of 22) -9963 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 17867 chr20 32483862 32483966 + 0 NA promoter-TSS (NM_080616) promoter-TSS (NM_080616) -332 NM_080616 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4 nucleolar protein 4 like protein-coding 27916 chr8 60807944 60808048 + 0 NA intron (NM_017780, intron 6 of 37) intron (NM_017780, intron 6 of 37) 66737 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 25102 chr6 125099777 125099846 + 0 NA Intergenic CpG -53918 NM_001003397 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 tumor protein D52-like 1 protein-coding 24663 chr6 48535770 48535883 + 0 NA Intergenic MER89|LTR|ERV1 -467137 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 14136 chr19 12365586 12365722 + 0 NA promoter-TSS (NM_030824) promoter-TSS (NM_030824) 7 NM_030824 79973 Hs.253193 NM_030824 ENSG00000198342 ZNF442 - zinc finger protein 442 protein-coding 1081 chr1 67754210 67754314 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 69085 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 16284 chr2 127811140 127811291 + 0 NA promoter-TSS (NM_018383) promoter-TSS (NM_018383) -28 NM_001006623 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 16742 chr2 179264526 179264600 + 0 NA promoter-TSS (NM_178123) promoter-TSS (NM_178123) 60 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 4769 chr11 7665818 7665928 + 0 NA non-coding (NR_126508, exon 9 of 10) non-coding (NR_126508, exon 9 of 10) 7018 NM_001302827 51700 Hs.414362 NM_016229 ENSG00000166394 CYB5R2 B5R.2 cytochrome b5 reductase 2 protein-coding 12502 chr17 41793325 41793400 + 0 NA Intergenic Intergenic -6650 NM_021991 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 30203 chr9 128863794 128863898 + 0 NA intron (NM_001287390, intron 1 of 14) intron (NM_001287390, intron 1 of 14) 18229 NM_001287390 883 Hs.495250 NM_004059 ENSG00000171097 KYAT1 CCBL1|GTK|KAT1|KATI kynurenine aminotransferase 1 protein-coding 7340 chr12 84502554 84502658 + 0 NA Intergenic MER50-int|LTR|ERV1 410223 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 18750 chr22 28883430 28883445 + 0 NA promoter-TSS (NM_001206998) promoter-TSS (NM_001206998) -330 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 17189 chr2 224910102 224910206 + 0 NA intron (NM_014689, intron 3 of 55) intron (NM_014689, intron 3 of 55) 36911 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 14936 chr2 6186883 6186987 + 0 NA Intergenic Intergenic 188487 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 22060 chr4 180696035 180696139 + 0 NA Intergenic Intergenic 463062 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 18825 chr22 32996855 32996959 + 0 NA intron (NM_001135774, intron 2 of 13) intron (NM_001135774, intron 2 of 13) 9914 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 15974 chr2 96493221 96493405 + 0 NA Intergenic Intergenic 12072 NM_001285486 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 5445 chr11 64856759 64856928 + 0 NA intron (NM_001282444, intron 5 of 6) intron (NM_001282444, intron 5 of 6) -12274 NM_017525 55561 Hs.293590 NM_017525 ENSG00000171219 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma protein-coding 4111 chr10 95264280 95264384 + 0 NA intron (NM_020992, intron 3 of 6) intron (NM_020992, intron 3 of 6) 26816 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 4903 chr11 15494401 15494505 + 0 NA Intergenic MER54B|LTR|ERVL -149432 NM_001293172 102724957 Hs.512245 NM_001293172 ENSG00000254695 LOC102724957 - uncharacterized LOC102724957 protein-coding 12627 chr17 48602697 48602835 + 0 NA TTS (NR_033202) TTS (NR_033202) 2206 NM_018952 3216 Hs.98428 NM_018952 ENSG00000108511 HOXB6 HOX2|HOX2B|HU-2|Hox-2.2 homeobox B6 protein-coding 2364 chr1 201283370 201283499 + 0 NA promoter-TSS (NM_000299) promoter-TSS (NM_000299) -18 NM_001005337 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 22027 chr4 174423758 174423862 + 0 NA promoter-TSS (NR_036236) promoter-TSS (NR_036236) 15 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 25470 chr6 166382965 166382999 + 0 NA promoter-TSS (NM_001270879) promoter-TSS (NM_001270879) 31 NR_073093 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|dJ68L15.3 mitochondrial pyruvate carrier 1 protein-coding 20728 chr3 178715551 178715690 + 0 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 144785 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 173 chr1 11980092 11980097 + 0 NA promoter-TSS (NM_001127660) promoter-TSS (NM_001127660) -87 NM_001127660 9927 Hs.376681 NM_014874 ENSG00000116688 MFN2 CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF mitofusin 2 protein-coding 13540 chr18 48955336 48955485 + 0 NA Intergenic Intergenic -4699 NM_001190821 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 17355 chr2 237940318 237940422 + 0 NA Intergenic MER61E|LTR|ERV1 -26575 NM_080678 140739 Hs.471785 NM_080678 ENSG00000184182 UBE2F NCE2 ubiquitin conjugating enzyme E2 F (putative) protein-coding 28210 chr8 94259240 94259344 + 0 NA intron (NM_005261, intron 2 of 4) intron (NM_005261, intron 2 of 4) 3027 NM_181702 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 2709 chr1 218480210 218480314 + 0 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 37636 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 23049 chr5 115321428 115321532 + 0 NA Intergenic MIR|SINE|MIR -24719 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 19820 chr3 107392920 107393024 + 0 NA Intergenic L2c|LINE|L2 -10813 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 25019 chr6 111484007 111484073 + 0 NA promoter-TSS (NM_001286431) promoter-TSS (NM_001286431) -325 NM_002912 5980 Hs.232021 NM_002912 ENSG00000009413 REV3L POLZ|REV3 REV3 like, DNA directed polymerase zeta catalytic subunit protein-coding 24167 chr6 20267223 20267327 + 0 NA Intergenic Intergenic -54811 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 12762 chr17 57946886 57946990 + 0 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 8385 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 13889 chr19 2154653 2154805 + 0 NA Intergenic MER21A|LTR|ERVL -3172 NM_001261826 8943 Hs.512815 NM_003938 ENSG00000065000 AP3D1 ADTD|HPS10|hBLVR adaptor related protein complex 3 delta 1 subunit protein-coding 10372 chr15 70196748 70196876 + 0 NA Intergenic Intergenic -98895 NM_001105192 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 transducin like enhancer of split 3 protein-coding 13952 chr19 4471955 4472049 + 0 NA promoter-TSS (NM_001001520) promoter-TSS (NM_001001520) -194 NM_001001520 84717 Hs.43071 NM_032631 ENSG00000167674 HDGFRP2 HDGF-2|HDGF2|HRP-2 hepatoma-derived growth factor-related protein 2 protein-coding 27000 chr7 129984596 129984735 + 0 NA Intergenic L1M5|LINE|L1 -31705 NM_003344 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 17661 chr20 14879520 14879667 + 0 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) 49925 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 30548 chrX 20378455 20378594 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -111892 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 5272 chr11 57567525 57567600 + 0 NA intron (NM_198183, intron 1 of 3) intron (NM_198183, intron 1 of 3) 145 NM_004223 9246 Hs.425777 NM_004223 ENSG00000156587 UBE2L6 RIG-B|UBCH8 ubiquitin conjugating enzyme E2 L6 protein-coding 7673 chr12 112978389 112978543 + 0 NA promoter-TSS (NM_016817) promoter-TSS (NM_016817) -3 NM_002535 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 20012 chr3 120908113 120908217 + 0 NA promoter-TSS (NM_001308330) promoter-TSS (NM_001308330) -38 NM_014980 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 9723 chr14 103361925 103362037 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger -23383 NM_001128919 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a microtubule affinity regulating kinase 3 protein-coding 28951 chr9 16824662 16824725 + 0 NA intron (NM_017637, intron 1 of 6) intron (NM_017637, intron 1 of 6) 46095 NM_017637 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 12247 chr17 27552466 27552655 + 0 NA intron (NM_014238, intron 3 of 20) intron (NM_014238, intron 3 of 20) -78588 NR_024043 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 1696 chr1 150926138 150926318 + 0 NA promoter-TSS (NM_001243491) promoter-TSS (NM_001243491) -111 NM_012432 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated 1 protein-coding 21147 chr4 6783649 6783772 + 0 NA intron (NM_001100590, intron 1 of 8) G-rich|Low_complexity|Low_complexity 978 NM_001100590 9778 Hs.79276 NM_014743 ENSG00000170871 KIAA0232 - KIAA0232 protein-coding 3168 chr10 329509 329662 + 0 NA exon (NM_014974, exon 30 of 37) exon (NM_014974, exon 30 of 37) -47499 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 5486 chr11 65592937 65593036 + 0 NA TTS (NM_001099409) TTS (NM_001099409) 3010 NM_033455 10089 Hs.175218 NM_005714 ENSG00000173338 KCNK7 K2p7.1|TWIK3 potassium two pore domain channel subfamily K member 7 protein-coding 16947 chr2 203656687 203656791 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -49736 NM_006139 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 13929 chr19 3506028 3506163 + 0 NA promoter-TSS (NM_016263) promoter-TSS (NM_016263) -202 NM_016263 51343 Hs.413133 NM_016263 ENSG00000105325 FZR1 CDC20C|CDH1|FZR|FZR2|HCDH|HCDH1 fizzy/cell division cycle 20 related 1 protein-coding 27935 chr8 62947835 62947927 + 0 NA intron (NR_130764, intron 5 of 6) MLT1G1|LTR|ERVL-MaLR -29980 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 UG0898H09 - uncharacterized LOC643763 ncRNA 16882 chr2 197500159 197500178 + 0 NA promoter-TSS (NM_002156) promoter-TSS (NM_002156) 106 NM_199440 3329 Hs.595053 NM_002156 ENSG00000144381 HSPD1 CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13 heat shock protein family D (Hsp60) member 1 protein-coding 29312 chr9 77926462 77926599 + 0 NA intron (NM_002072, intron 1 of 6) intron (NM_002072, intron 1 of 6) 104919 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 5580 chr11 68297933 68298000 + 0 NA Intergenic Intergenic -14643 NM_001291902 4041 Hs.6347 NM_002335 ENSG00000162337 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2 LDL receptor related protein 5 protein-coding 30059 chr9 122390314 122390359 + 0 NA exon (NM_001271368, exon 11 of 12) exon (NM_001271368, exon 11 of 12) 15014 NM_001271165 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 6822 chr12 31074109 31074263 + 0 NA promoter-TSS (NR_038927) promoter-TSS (NR_038927) -339 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 18408 chr20 63894956 63895103 + 0 NA promoter-TSS (NM_025219) promoter-TSS (NM_025219) -73 NM_025219 80331 Hs.164419 NM_025219 ENSG00000101152 DNAJC5 CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5 DnaJ heat shock protein family (Hsp40) member C5 protein-coding 59 chr1 3624790 3624939 + 0 NA promoter-TSS (NM_182752) promoter-TSS (NM_182752) -128 NM_182752 127262 Hs.20529 NM_182752 ENSG00000158109 TPRG1L FAM79A|h-mover|mover tumor protein p63 regulated 1 like protein-coding 27062 chr7 135510128 135510322 + 0 NA promoter-TSS (NM_001190847) promoter-TSS (NM_001190847) -98 NM_001190848 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 4572 chr10 125161387 125161491 + 0 NA promoter-TSS (NM_001329) promoter-TSS (NM_001329) -378 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 4546 chr10 123154211 123154219 + 0 NA promoter-TSS (NM_004725) promoter-TSS (NM_004725) -29 NM_001007793 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3, mitotic checkpoint protein protein-coding 8345 chr13 73287129 73287242 + 0 NA Intergenic Intergenic 228393 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 7461 chr12 95858780 95858914 + 0 NA promoter-TSS (NR_135014) promoter-TSS (NR_135014) -8 NR_135015 105369921 Hs.125549 NR_135014 ENSG00000258343 LOC105369921 - uncharacterized LOC105369921 ncRNA 5951 chr11 100828373 100828501 + 0 NA intron (NM_152432, intron 3 of 23) intron (NM_152432, intron 3 of 23) -140482 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 18297 chr20 56689491 56689595 + 0 NA Intergenic Intergenic 60241 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 16993 chr2 207408581 207408664 + 0 NA Intergenic Intergenic -121270 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 2358 chr1 201126957 201127061 + 0 NA Intergenic Intergenic -11637 NM_001270601 647219 Hs.143949 NM_001270601 ENSG00000232237 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 22032 chr4 175128955 175129059 + 0 NA Intergenic LTR16D|LTR|ERVL 210649 NM_001278126 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 30043 chr9 121356560 121356597 + 0 NA intron (NM_004099, intron 1 of 6) L2b|LINE|L2 13726 NR_073037 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 2247 chr1 186927984 186928119 + 0 NA intron (NM_024420, intron 7 of 17) intron (NM_024420, intron 7 of 17) 99151 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 23731 chr5 172771108 172771253 + 0 NA promoter-TSS (NM_004417) promoter-TSS (NM_004417) 20 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 21682 chr4 107989667 107989820 + 0 NA promoter-TSS (NM_005327) promoter-TSS (NM_005327) 29 NM_005327 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 12393 chr17 36591794 36591898 + 0 NA promoter-TSS (NM_024308) promoter-TSS (NM_024308) 50 NM_024308 79154 Hs.462859 NM_024308 ENSG00000278535 DHRS11 ARPG836|SDR24C1|spDHRS11 dehydrogenase/reductase 11 protein-coding 10151 chr15 56244500 56244604 + 0 NA Intergenic L2|LINE|L2 -1267 NM_022841 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 14166 chr19 13833755 13833859 + 0 NA TTS (NR_036515) TTS (NR_036515) 2482 NR_036515 284454 Hs.436426 NR_036515 ENSG00000267519 LOC284454 - uncharacterized LOC284454 ncRNA 21765 chr4 122732504 122732645 + 0 NA promoter-TSS (NR_024041) promoter-TSS (NR_024041) -116 NR_024041 729338 Hs.647968 NR_024041 CETN4P - centrin 4, pseudogene pseudo 3734 chr10 59991731 59991878 + 0 NA Intergenic Intergenic -30891 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 13882 chr19 2032407 2032525 + 0 NA Intergenic Intergenic -16763 NM_017797 55643 Hs.465543 NM_017797 ENSG00000133243 BTBD2 - BTB domain containing 2 protein-coding 25376 chr6 154721704 154721785 + 0 NA Intergenic Intergenic -11634 NM_001286188 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 22419 chr5 39639968 39640072 + 0 NA Intergenic Intergenic 119589 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 22244 chr5 14036173 14036301 + 0 NA Intergenic Intergenic -91757 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 22173 chr5 5271375 5271503 + 0 NA intron (NR_136935, intron 17 of 21) intron (NR_136935, intron 17 of 21) 131109 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 10588 chr15 83653908 83653983 + 0 NA promoter-TSS (NM_001301110) promoter-TSS (NM_001301110) -141 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 13795 chr18 76559501 76559659 + 0 NA non-coding (NR_015417, exon 3 of 3) non-coding (NR_015417, exon 3 of 3) 30925 NR_015417 284276 Hs.390287 NR_015417 ENSG00000263812 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 14861 chr19 58183282 58183394 + 0 NA 5' UTR (NM_016324, exon 1 of 5) 5' UTR (NM_016324, exon 1 of 5) 349 NM_001278734 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 20165 chr3 132180569 132180636 + 0 NA Intergenic Intergenic -136765 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 14797 chr19 55160612 55160765 + 0 NA exon (NM_001256714, exon 9 of 12) exon (NM_001256714, exon 9 of 12) -2956 NM_000363 7137 Hs.709179 NM_000363 ENSG00000129991 TNNI3 CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI troponin I3, cardiac type protein-coding 19012 chr22 45688914 45689083 + 0 NA intron (NM_001167621, intron 1 of 10) MamRep137|DNA|TcMar-Tigger 17200 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 21061 chr3 196740064 196740214 + 0 NA 5' UTR (NM_002577, exon 1 of 15) 5' UTR (NM_002577, exon 1 of 15) 282 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 22867 chr5 90529659 90529672 + 0 NA promoter-TSS (NM_001286812) promoter-TSS (NM_001286812) -81 NM_001286812 116068 Hs.136235 NM_198273 ENSG00000176018 LYSMD3 - LysM domain containing 3 protein-coding 21496 chr4 80461544 80461648 + 0 NA intron (NM_152770, intron 2 of 5) MER4D1|LTR|ERV1 125876 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 C4orf22 - chromosome 4 open reading frame 22 protein-coding 9619 chr14 96204711 96204815 + 0 NA promoter-TSS (NM_000623) promoter-TSS (NM_000623) -35 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 18114 chr20 46255572 46255723 + 0 NA intron (NM_021248, intron 1 of 11) intron (NM_021248, intron 1 of 11) 52851 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 29877 chr9 111857754 111857877 + 0 NA Intergenic LTR104_Mam|LTR|Gypsy -38951 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 14824 chr19 55653833 55653931 + 0 NA promoter-TSS (NM_001012478) promoter-TSS (NM_001012478) -168 NM_007279 11338 Hs.528007 NM_007279 ENSG00000063244 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 18950 chr22 41286280 41286430 + 0 NA promoter-TSS (NM_002883) promoter-TSS (NM_002883) -104 NM_002883 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 5543 chr11 67062669 67062760 + 0 NA intron (NM_001300886, intron 1 of 2) intron (NM_001300886, intron 1 of 2) 5896 NM_001300886 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 8805 chr14 31950837 31950941 + 0 NA Intergenic Intergenic 125810 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 959 chr1 59296828 59296962 + 0 NA promoter-TSS (NM_001113411) promoter-TSS (NM_001113411) -58 NM_001113411 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 3194 chr10 3755159 3755263 + 0 NA Intergenic Intergenic 30070 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 15727 chr2 68908466 68908623 + 0 NA Intergenic Intergenic -37027 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 7827 chr12 123365167 123365271 + 0 NA promoter-TSS (NR_107039) promoter-TSS (NR_107039) -10 NM_001167856 55206 Hs.7012 NM_018183 ENSG00000139697 SBNO1 MOP3|Sno strawberry notch homolog 1 protein-coding 22729 chr5 74579304 74579332 + 0 NA Intergenic Intergenic -42342 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 8963 chr14 49962765 49962869 + 0 NA Intergenic Intergenic -3582 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 20813 chr3 184229530 184229634 + 0 NA promoter-TSS (NM_138345) promoter-TSS (NM_138345) -847 NM_138345 90113 Hs.584997 NM_138345 ENSG00000145198 VWA5B2 - von Willebrand factor A domain containing 5B2 protein-coding 30784 chrX 65986289 65986359 + 0 NA Intergenic Intergenic -32546 NR_029637 407008 NR_029637 ENSG00000274536 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 30063 chr9 122499066 122499170 + 0 NA Intergenic L1PA15-16|LINE|L1 -11684 NM_054107 26740 Hs.460145 NM_054107 ENSG00000197233 OR1J2 HG152|HSA5|OR1J3|OR1J5|OR9-19|OST044 olfactory receptor family 1 subfamily J member 2 protein-coding 25741 chr7 16668137 16668260 + 0 NA intron (NR_027624, intron 2 of 10) intron (NR_027624, intron 2 of 10) 22064 NM_001159767 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 20280 chr3 141231651 141231770 + 0 NA promoter-TSS (NM_001037172) promoter-TSS (NM_001037172) -115 NM_152282 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 28443 chr8 115100978 115101030 + 0 NA Intergenic LTR91|LTR|ERVL 567008 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 24348 chr6 30876165 30876329 + 0 NA Intergenic Charlie29a|DNA|hAT-Charlie -6366 NM_001297652 780 Hs.631988 NM_001954 ENSG00000204580 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 15330 chr2 32977279 32977432 + 0 NA intron (NM_206943, intron 2 of 33) L1PA14|LINE|L1 30053 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 9531 chr14 89417293 89417397 + 0 NA promoter-TSS (NR_036500) promoter-TSS (NR_036500) -9 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 25767 chr7 17696613 17696727 + 0 NA Intergenic Intergenic -137761 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 15335 chr2 34105182 34105290 + 0 NA intron (NR_126403, intron 4 of 5) L1MC5|LINE|L1 38010 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 24150 chr6 19410609 19410713 + 0 NA Intergenic Intergenic -39160 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 6131 chr11 116852535 116852633 + 0 NA intron (NM_025164, intron 20 of 23) MIRb|SINE|MIR -14634 NM_001318021 335 Hs.93194 NM_000039 ENSG00000118137 APOA1 apo(a) apolipoprotein A1 protein-coding 3830 chr10 70146867 70146971 + 0 NA promoter-TSS (NM_001040273) promoter-TSS (NM_001040273) -179 NR_073580 219743 Hs.533655 NM_173555 ENSG00000156521 TYSND1 NET41 trypsin domain containing 1 protein-coding 20288 chr3 141460251 141460387 + 0 NA Intergenic Intergenic -26728 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 25837 chr7 22565508 22565654 + 0 NA intron (NR_038393, intron 2 of 3) intron (NR_038393, intron 2 of 3) 2244 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 20759 chr3 181711814 181711918 + 0 NA promoter-TSS (NM_003106) promoter-TSS (NM_003106) -58 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 17067 chr2 215411010 215411114 + 0 NA intron (NM_001306132, intron 13 of 44) intron (NM_001306132, intron 13 of 44) 25006 NM_212478 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF fibronectin 1 protein-coding 7283 chr12 76020898 76021021 + 0 NA Intergenic Intergenic 10817 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 21631 chr4 101348012 101348104 + 0 NA promoter-TSS (NM_000944) promoter-TSS (NM_000944) 281 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 19042 chr22 49263161 49263265 + 0 NA Intergenic Intergenic 280253 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 23840 chr5 180803911 180804015 + 0 NA promoter-TSS (NM_001114620) promoter-TSS (NM_001114620) -61 NM_001114620 4245 Hs.519818 NM_002406 ENSG00000131446 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 6882 chr12 40907268 40907356 + 0 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -1045 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 6065 chr11 111328009 111328058 + 0 NA Intergenic Intergenic -19724 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 9492 chr14 85471817 85471936 + 0 NA Intergenic Intergenic -58149 NM_001346146 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 12710 chr17 53626428 53626555 + 0 NA Intergenic Intergenic -196387 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 5386 chr11 62786658 62786805 + 0 NA promoter-TSS (NM_199337) promoter-TSS (NM_199337) -671 NM_199337 374395 Hs.381134 NM_199337 ENSG00000185475 TMEM179B - transmembrane protein 179B protein-coding 17060 chr2 214136173 214136277 + 0 NA intron (NR_047660, intron 13 of 14) MSTB1|LTR|ERVL-MaLR -275343 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing protein 2-like protein-coding 14910 chr2 1638401 1638505 + 0 NA intron (NM_012293, intron 21 of 22) intron (NM_012293, intron 21 of 22) 106094 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 4612 chr10 129964308 129964412 + 0 NA promoter-TSS (NM_001005463) promoter-TSS (NM_001005463) -533 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|O/E-2|OE-2 early B-cell factor 3 protein-coding 22361 chr5 34915527 34915676 + 0 NA promoter-TSS (NR_026591) promoter-TSS (NR_026591) 25 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 4017 chr10 86254601 86254705 + 0 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 10135 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 24578 chr6 43014057 43014207 + 0 NA promoter-TSS (NM_014623) promoter-TSS (NM_014623) 29 NM_057161 116138 Hs.412468 NM_057161 ENSG00000124702 KLHDC3 PEAS|dJ20C7.3 kelch domain containing 3 protein-coding 15612 chr2 60512764 60512868 + 0 NA intron (NM_022893, intron 2 of 3) intron (NM_022893, intron 2 of 3) 40682 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 25883 chr7 25025348 25025394 + 0 NA Intergenic MLT1O|LTR|ERVL-MaLR -45159 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 29584 chr9 94259194 94259323 + 0 NA promoter-TSS (NM_001301275) promoter-TSS (NM_001301275) -8 NM_003448 169841 Hs.387623 NM_003448 ENSG00000175787 ZNF169 - zinc finger protein 169 protein-coding 10734 chr15 93030749 93030808 + 0 NA Intergenic Intergenic 42382 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule family member a protein-coding 30731 chrX 52920877 52920965 + 0 NA Intergenic CpG 21862 NM_001099684 727866 Hs.6451 NM_001099684 ENSG00000179304 FAM156B TMEM29B family with sequence similarity 156 member B protein-coding 21786 chr4 127880742 127880889 + 0 NA promoter-TSS (NM_001190799) promoter-TSS (NM_001190799) -46 NM_001190799 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 19098 chr3 5016665 5016777 + 0 NA Intergenic L2c|LINE|L2 -36760 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 8954 chr14 49688207 49688311 + 0 NA 5' UTR (NM_001197330, exon 1 of 18) 5' UTR (NM_001197330, exon 1 of 18) 121 NM_002692 5427 Hs.162777 NM_002692 ENSG00000100479 POLE2 DPE2 DNA polymerase epsilon 2, accessory subunit protein-coding 24343 chr6 30810965 30810975 + 0 NA Intergenic MER74A|LTR|ERVL 19689 NR_130726 401247 NR_130726 ENSG00000214894 LINC00243 C6orf214|NCRNA00243 long intergenic non-protein coding RNA 243 ncRNA 18655 chr22 20606424 20606567 + 0 NA Intergenic Intergenic -83060 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 5269 chr11 57427089 57427193 + 0 NA promoter-TSS (NM_014096) promoter-TSS (NM_014096) 7 NM_199329 29015 Hs.99962 NM_014096 ENSG00000134802 SLC43A3 EEG1|FOAP-13|PRO1659|SEEEG-1 solute carrier family 43 member 3 protein-coding 8261 chr13 49495964 49496068 + 0 NA promoter-TSS (NR_135323) promoter-TSS (NR_135323) -331 NR_135323 51131 Hs.369039 NM_001040443 ENSG00000136147 PHF11 APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34 PHD finger protein 11 protein-coding 28311 chr8 100807193 100807356 + 0 NA Intergenic Intergenic -85187 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 26224 chr7 47601468 47601572 + 0 NA Intergenic MER91C|DNA|hAT-Tip100 -19376 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 21575 chr4 89112369 89112473 + 0 NA promoter-TSS (NM_145715) promoter-TSS (NM_145715) -396 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 1448 chr1 108199283 108199387 + 0 NA intron (NM_013386, intron 1 of 9) intron (NM_013386, intron 1 of 9) 1023 NM_013386 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1 solute carrier family 25 member 24 protein-coding 3795 chr10 67764412 67764547 + 0 NA Intergenic CpG -68288 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 26497 chr7 81073691 81073869 + 0 NA Intergenic Intergenic -154429 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 25687 chr7 12475384 12475488 + 0 NA Intergenic Arthur1B|DNA|hAT-Tip100 -20993 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 4913 chr11 16001989 16002137 + 0 NA intron (NM_001145811, intron 12 of 14) intron (NM_001145811, intron 12 of 14) -32442 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 11230 chr16 30610392 30610459 + 0 NA promoter-TSS (NR_104166) promoter-TSS (NR_104166) 8 NR_073482 115509 Hs.454685 NM_138447 ENSG00000156853 ZNF689 TIPUH1 zinc finger protein 689 protein-coding 14249 chr19 17766710 17766823 + 0 NA exon (NM_001161357, exon 7 of 29) exon (NM_001161357, exon 7 of 29) 15289 NM_001161359 23149 Hs.96485 NM_015122 ENSG00000130475 FCHO1 - FCH domain only 1 protein-coding 7155 chr12 57127740 57127824 + 0 NA promoter-TSS (NM_002332) promoter-TSS (NM_002332) -717 NM_002332 4035 Hs.162757 NM_002332 ENSG00000123384 LRP1 A2MR|APOER|APR|CD91|IGFBP3R|KPA|LRP|LRP1A|TGFBR5 LDL receptor related protein 1 protein-coding 2020 chr1 167714634 167714747 + 0 NA Intergenic Intergenic -7260 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 4485 chr10 119686667 119686733 + 0 NA Intergenic Intergenic 35330 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 3770 chr10 62924626 62924661 + 0 NA Intergenic MER52C|LTR|ERV1 -105476 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 20597 chr3 168951535 168951687 + 0 NA Intergenic Intergenic 49666 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 9414 chr14 76918846 76919080 + 0 NA Intergenic Intergenic -40675 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 18972 chr22 42270621 42270725 + 0 NA intron (NR_036498, intron 1 of 1) CpG 920 NR_036498 388906 Hs.730075 NR_036498 ENSG00000182057 OGFRP1 - opioid growth factor receptor pseudogene 1 pseudo 17818 chr20 25390973 25391086 + 0 NA promoter-TSS (NM_015600) promoter-TSS (NM_015600) -47 NM_001042472 26090 Hs.441550 NM_015600 ENSG00000100997 ABHD12 ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2 abhydrolase domain containing 12 protein-coding 10388 chr15 70892469 70892589 + 0 NA promoter-TSS (NM_020147) promoter-TSS (NM_020147) 86 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 418 chr1 26357324 26357428 + 0 NA Intergenic Intergenic -3246 NM_001039775 55057 Hs.128738 NM_017977 ENSG00000176092 AIM1L CRYBG2 absent in melanoma 1-like protein-coding 28842 chr8 144522400 144522432 + 0 NA TTS (NM_001024678) TTS (NM_001024678) 4451 NM_014665 9684 Hs.459391 NM_014665 ENSG00000160959 LRRC14 LRRC14A leucine rich repeat containing 14 protein-coding 20494 chr3 157122258 157122362 + 0 NA intron (NR_034007, intron 1 of 3) intron (NR_034007, intron 1 of 3) 692 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 4174 chr10 97718754 97718952 + 0 NA TTS (NM_031484) TTS (NM_031484) 5145 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 933 chr1 58041762 58041906 + 0 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 181291 NR_104364 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 14586 chr19 46068764 46068897 + 0 NA intron (NR_125344, intron 1 of 1) intron (NR_125344, intron 1 of 1) 8799 NR_125344 400706 Hs.630811 NR_125344 ENSG00000204869 LOC400706 - uncharacterized LOC400706 ncRNA 13422 chr18 34659744 34659848 + 0 NA intron (NM_001128175, intron 1 of 11) intron (NM_001128175, intron 1 of 11) -50436 NM_032978 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 16903 chr2 200352723 200352827 + 0 NA intron (NM_001282743, intron 2 of 11) intron (NM_001282743, intron 2 of 11) 43825 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 2333 chr1 199742676 199742743 + 0 NA Intergenic Intergenic -284893 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 11494 chr16 67246726 67246786 + 0 NA intron (NM_013241, intron 1 of 21) CpG 766 NM_013241 29109 Hs.95231 NM_013241 ENSG00000135723 FHOD1 FHOS formin homology 2 domain containing 1 protein-coding 18215 chr20 51446826 51446930 + 0 NA intron (NM_001258295, intron 6 of 9) intron (NM_001258295, intron 6 of 9) 6099 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 7053 chr12 53180482 53180682 + 0 NA promoter-TSS (NM_015989) promoter-TSS (NM_015989) 64 NM_015989 51380 Hs.279815 NM_015989 ENSG00000139631 CSAD CSD|PCAP cysteine sulfinic acid decarboxylase protein-coding 2052 chr1 169539170 169539283 + 0 NA intron (NM_000130, intron 13 of 24) intron (NM_000130, intron 13 of 24) 47305 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 12189 chr17 18856208 18856336 + 0 NA promoter-TSS (NM_001243942) promoter-TSS (NM_001243942) -27 NM_001243936 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 2868 chr1 227333604 227333708 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -15531 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 20650 chr3 171809823 171809962 + 0 NA intron (NM_002662, intron 1 of 26) CpG 602 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 - phospholipase D1 protein-coding 16004 chr2 98921267 98921371 + 0 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 14902 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 5357 chr11 62025570 62025718 + 0 NA Intergenic Intergenic -57984 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 21573 chr4 88991930 88992034 + 0 NA intron (NM_014883, intron 3 of 23) MER31A|LTR|ERV1 65213 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 21926 chr4 153731396 153731500 + 0 NA intron (NM_173662, intron 3 of 8) intron (NM_173662, intron 3 of 8) 28787 NM_173662 285533 Hs.388364 NM_173662 ENSG00000145428 RNF175 - ring finger protein 175 protein-coding 12094 chr17 9836079 9836276 + 0 NA intron (NM_004246, intron 2 of 12) intron (NM_004246, intron 2 of 12) 10626 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 13524 chr18 48161454 48161471 + 0 NA intron (NM_001318841, intron 3 of 4) CpG -24153 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 5888 chr11 94771597 94771701 + 0 NA intron (NM_001301007, intron 1 of 11) intron (NM_001301007, intron 1 of 11) 3307 NM_130847 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 10177 chr15 58462688 58462792 + 0 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 30764 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 25381 chr6 155171211 155171335 + 0 NA intron (NM_012454, intron 8 of 25) intron (NM_012454, intron 8 of 25) -45690 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 29559 chr9 92770707 92770767 + 0 NA Intergenic Intergenic -5936 NM_001003800 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|bA526D8.1 BICD cargo adaptor 2 protein-coding 16014 chr2 99609784 99609888 + 0 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -119780 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 16706 chr2 176583039 176583143 + 0 NA Intergenic Intergenic 17961 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 16337 chr2 132416591 132416656 + 0 NA promoter-TSS (NM_001508) promoter-TSS (NM_001508) 49 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 23187 chr5 131164679 131164702 + 0 NA intron (NR_134495, intron 1 of 3) CpG 658 NR_073488 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 9944 chr15 40866055 40866179 + 0 NA Intergenic Intergenic 8172 NM_133639 171177 Hs.447901 NM_133639 ENSG00000104140 RHOV ARHV|CHP|WRCH2 ras homolog family member V protein-coding 27798 chr8 49167965 49168069 + 0 NA Intergenic MER70B|LTR|ERVL 95676 NM_001256597 492307 Hs.49890 NM_001007176 ENSG00000168333 C8orf22 - chromosome 8 open reading frame 22 protein-coding 25545 chr7 1579608 1579691 + 0 NA intron (NR_027328, intron 3 of 3) intron (NR_027328, intron 3 of 3) 9576 NR_021487 114796 Hs.436146 NR_021487 ENSG00000230487 PSMG3-AS1 - PSMG3 antisense RNA 1 (head to head) ncRNA 6530 chr12 6753596 6753717 + 0 NA promoter-TSS (NR_026581) promoter-TSS (NR_026581) -186 NR_026581 8079 Hs.524214 NM_005439 ENSG00000089693 MLF2 NTN4 myeloid leukemia factor 2 protein-coding 6197 chr11 119696786 119696940 + 0 NA intron (NM_203286, intron 1 of 5) intron (NM_203286, intron 1 of 5) 31862 NM_203286 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 16549 chr2 160493027 160493047 + 0 NA intron (NM_016836, intron 1 of 13) CpG 770 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 8886 chr14 36520643 36520747 + 0 NA promoter-TSS (NM_003317) promoter-TSS (NM_003317) -470 NM_001079668 7080 Hs.94367 NM_003317 ENSG00000136352 NKX2-1 BCH|BHC|NK-2|NKX2.1|NKX2A|NMTC1|T/EBP|TEBP|TITF1|TTF-1|TTF1 NK2 homeobox 1 protein-coding 27463 chr8 18620541 18620645 + 0 NA intron (NM_015310, intron 11 of 15) AluJb|SINE|Alu 188302 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 22722 chr5 73957452 73957556 + 0 NA Intergenic Intergenic 143986 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 20486 chr3 156788331 156788435 + 0 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 23638 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 7564 chr12 104408700 104408838 + 0 NA Intergenic MIRc|SINE|MIR -48145 NM_001173982 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537 carbohydrate sulfotransferase 11 protein-coding 1389 chr1 98920594 98920603 + 0 NA intron (NM_001037317, intron 4 of 5) intron (NM_001037317, intron 4 of 5) -83678 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 15196 chr2 25700387 25700491 + 0 NA Intergenic Intergenic -26792 NM_033148 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 30903 chrX 104251473 104251577 + 0 NA intron (NM_153448, intron 3 of 3) intron (NM_153448, intron 3 of 3) 3393 NM_153448 80712 Hs.223782 NM_153448 ENSG00000123576 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 5566 chr11 67583702 67583858 + 0 NA 5' UTR (NM_000852, exon 1 of 7) 5' UTR (NM_000852, exon 1 of 7) 185 NM_000852 2950 Hs.523836 NM_000852 ENSG00000084207 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding 637 chr1 36436998 36437159 + 0 NA intron (NM_001330493, intron 3 of 10) L1MC3|LINE|L1 13407 NM_145047 127700 Hs.202207 NM_145047 ENSG00000116885 OSCP1 C1orf102|NOR1 organic solute carrier partner 1 protein-coding 27030 chr7 132065859 132065894 + 0 NA Intergenic Intergenic 155656 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 25685 chr7 12432010 12432114 + 0 NA Intergenic L1PA6|LINE|L1 -28121 NR_144534 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 25248 chr6 142756346 142756480 + 0 NA intron (NM_006734, intron 9 of 9) ERV3-16A3_LTR|LTR|ERVL -118524 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 2066 chr1 170708147 170708251 + 0 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 44027 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 10556 chr15 81275165 81275281 + 0 NA intron (NM_172217, intron 5 of 17) intron (NM_172217, intron 5 of 17) -21690 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 16950 chr2 203759761 203759874 + 0 NA Intergenic L1MA3|LINE|L1 53342 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 16798 chr2 188189415 188189485 + 0 NA intron (NR_126396, intron 1 of 2) MLT1H2|LTR|ERVL-MaLR 98241 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 10286 chr15 64864974 64864976 + 0 NA exon (NM_001195059, exon 5 of 5) exon (NM_001195059, exon 5 of 5) 23092 NM_025201 80301 Hs.709337 NM_025201 ENSG00000241839 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing O2 protein-coding 2679 chr1 215114192 215114346 + 0 NA intron (NM_014217, intron 2 of 6) intron (NM_014217, intron 2 of 6) 31052 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 19453 chr3 46976708 46976861 + 0 NA promoter-TSS (NR_102269) promoter-TSS (NR_102269) -17 NM_001277074 151903 Hs.631918 NM_144716 ENSG00000160799 CCDC12 - coiled-coil domain containing 12 protein-coding 17835 chr20 31514407 31514531 + 0 NA promoter-TSS (NM_178580) promoter-TSS (NM_178580) 59 NM_178582 81502 Hs.373741 NM_030789 ENSG00000101294 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1 histocompatibility minor 13 protein-coding 6554 chr12 7219788 7219925 + 0 NA Intergenic Intergenic 29494 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 1232 chr1 86636976 86637112 + 0 NA intron (NR_024604, intron 4 of 14) intron (NR_024604, intron 4 of 14) 2768 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 19861 chr3 111594336 111594440 + 0 NA 5' UTR (NM_024508, exon 2 of 2) 5' UTR (NM_024508, exon 2 of 2) 947 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 19669 chr3 72996682 72996755 + 0 NA promoter-TSS (NM_001318028) promoter-TSS (NM_001318028) -25 NM_001318026 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 17878 chr20 33489792 33489912 + 0 NA promoter-TSS (NM_001032999) promoter-TSS (NM_001032999) -270 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 5978 chr11 102958070 102958174 + 0 NA Intergenic Intergenic -2388 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 21281 chr4 35818702 35818806 + 0 NA Intergenic L2a|LINE|L2 -425362 NR_122079 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 7668 chr12 112149737 112149841 + 0 NA exon (NM_006700, exon 9 of 12) exon (NM_006700, exon 9 of 12) 13532 NR_106921 102465519 NR_106921 ENSG00000173064 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 1639 chr1 145927545 145927573 + 0 NA promoter-TSS (NM_005105) promoter-TSS (NM_005105) -23 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 5197 chr11 43358815 43358965 + 0 NA promoter-TSS (NM_018259) promoter-TSS (NM_018259) 5 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 1035 chr1 65066731 65066835 + 0 NA 5' UTR (NM_001321853, exon 2 of 27) 5' UTR (NM_001321853, exon 2 of 27) 963 NM_001321853 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 3872 chr10 72320021 72320125 + 0 NA Intergenic CpG 35076 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 13438 chr18 35497583 35497723 + 0 NA promoter-TSS (NM_001308064) promoter-TSS (NM_001308064) -4 NM_001308064 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 3367 chr10 18627696 18627800 + 0 NA intron (NM_182543, intron 3 of 10) L1PA3|LINE|L1 23889 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase family member 6 protein-coding 18601 chr22 11055714 11055861 + 0 NA Intergenic AluSz|SINE|Alu -94258 NR_132320 102723780 NR_132320 LOC102723780 - protein FRG1-like pseudo 18495 chr21 33854723 33854853 + 0 NA intron (NM_001331010, intron 28 of 38) intron (NM_001331010, intron 28 of 38) 61066 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5O ATPO|HMC08D05|OSCP ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding 3964 chr10 79018714 79018818 + 0 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 48682 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 22114 chr4 185839198 185839302 + 0 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -26994 NM_001145670 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 16621 chr2 168992120 168992255 + 0 NA intron (NM_003742, intron 8 of 27) Charlie15b|DNA|hAT-Charlie 39136 NM_003742 8647 Hs.658439 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 6901 chr12 43758775 43758967 + 0 NA promoter-TSS (NM_001114182) promoter-TSS (NM_001114182) -54 NM_001271826 83448 Hs.445814 NM_031292 ENSG00000129317 PUS7L - pseudouridylate synthase 7 like protein-coding 26985 chr7 129224725 129224878 + 0 NA promoter-TSS (NM_001130720) promoter-TSS (NM_001130720) -213 NM_001130720 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 11147 chr16 23771801 23771905 + 0 NA Intergenic MER54A|LTR|ERVL 17226 NM_022097 63928 Hs.178589 NM_022097 ENSG00000166869 CHP2 - calcineurin like EF-hand protein 2 protein-coding 28248 chr8 96261528 96261682 + 0 NA promoter-TSS (NM_014754) promoter-TSS (NM_014754) 8 NM_015942 51001 Hs.308613 NM_015942 ENSG00000156469 MTERF3 CGI-12|MTERFD1 mitochondrial transcription termination factor 3 protein-coding 5529 chr11 66694853 66694998 + 0 NA intron (NM_006946, intron 20 of 36) LTR41C|LTR|ERVL -17004 NM_001286135 83759 Hs.618713 NM_031492 ENSG00000173914 RBM4B RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B RNA binding motif protein 4B protein-coding 4378 chr10 113093628 113093823 + 0 NA intron (NM_001146283, intron 5 of 12) intron (NM_001146283, intron 5 of 12) 48370 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 7928 chr13 19633458 19633623 + 0 NA promoter-TSS (NM_017520) promoter-TSS (NM_017520) -108 NM_017520 54737 Hs.269654 NM_017520 ENSG00000196199 MPHOSPH8 HSMPP8|TWA3|mpp8 M-phase phosphoprotein 8 protein-coding 5729 chr11 80297928 80298057 + 0 NA Intergenic Intergenic 464811 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 2995 chr1 234724234 234724413 + 0 NA intron (NR_038856, intron 1 of 2) intron (NR_038856, intron 1 of 2) 281 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 27165 chr7 143381019 143381123 + 0 NA promoter-TSS (NM_003461) promoter-TSS (NM_003461) -46 NM_001322263 100507507 Hs.131743 NM_001322263 LOC100507507 - uncharacterized LOC100507507 protein-coding 10338 chr15 67521001 67521105 + 0 NA promoter-TSS (NR_040055) promoter-TSS (NR_040055) 9 NR_040056 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 13756 chr18 70337260 70337364 + 0 NA intron (NR_126336, intron 3 of 3) intron (NR_126336, intron 3 of 3) 1873 NR_126336 101927481 Hs.633706 NR_126336 ENSG00000266258 LINC01909 - long intergenic non-protein coding RNA 1909 ncRNA 19333 chr3 34183305 34183409 + 0 NA Intergenic Intergenic 384786 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 14244 chr19 17419849 17419958 + 0 NA promoter-TSS (NM_138401) promoter-TSS (NM_138401) 56 NM_138401 93343 Hs.515243 NM_138401 ENSG00000141971 MVB12A CFBP|FAM125A multivesicular body subunit 12A protein-coding 14764 chr19 53520921 53521078 + 0 NA promoter-TSS (NM_018555) promoter-TSS (NM_018555) 76 NM_001317120 55422 Hs.185674 NM_018555 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 19845 chr3 109702370 109702474 + 0 NA Intergenic Intergenic 99594 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 8821 chr14 33647669 33647773 + 0 NA intron (NM_001164749, intron 5 of 11) intron (NM_001164749, intron 5 of 11) -61216 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 30535 chrX 17737289 17737393 + 0 NA promoter-TSS (NM_006746) promoter-TSS (NM_006746) -108 NM_006746 6322 Hs.109655 NM_006746 ENSG00000047634 SCML1 - sex comb on midleg-like 1 (Drosophila) protein-coding 9966 chr15 41972689 41972895 + 0 NA promoter-TSS (NR_120334) promoter-TSS (NR_120334) 29 NR_120334 101928388 Hs.738043 NR_120334 ENSG00000246740 PLA2G4E-AS1 - PLA2G4E antisense RNA 1 ncRNA 7751 chr12 120356702 120356824 + 0 NA intron (NM_002442, intron 9 of 14) intron (NM_002442, intron 9 of 14) 12417 NM_002442 4440 Hs.158311 NM_002442 ENSG00000135097 MSI1 - musashi RNA binding protein 1 protein-coding 6933 chr12 47267644 47267785 + 0 NA Intergenic LTR79|LTR|ERVL 39685 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 18452 chr21 29073698 29073821 + 0 NA promoter-TSS (NM_001282909) promoter-TSS (NM_001282909) 38 NM_001282909 10694 Hs.125113 NM_006585 ENSG00000156261 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1 subunit 8 protein-coding 14012 chr19 7069239 7069374 + 0 NA promoter-TSS (NM_001044387) promoter-TSS (NM_001044387) -154 NM_024341 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 12114 chr17 12591435 12591500 + 0 NA intron (NR_034145, intron 3 of 3) intron (NR_034145, intron 3 of 3) 41499 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 18342 chr20 59032416 59032434 + 0 NA promoter-TSS (NM_006886) promoter-TSS (NM_006886) -58 NM_006886 514 Hs.177530 NM_006886 ENSG00000124172 ATP5E ATPE|MC5DN3 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit protein-coding 14906 chr2 1587108 1587191 + 0 NA Intergenic Intergenic 157398 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 12801 chr17 60677696 60677854 + 0 NA promoter-TSS (NM_001330413) promoter-TSS (NM_001330413) 0 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3, microtubule associated cell migration factor protein-coding 27331 chr8 6649025 6649070 + 0 NA TTS (NM_001322042) TTS (NM_001322042) -26827 NR_107022 102465861 NR_107022 ENSG00000276580 MIR8055 hsa-mir-8055 microRNA 8055 ncRNA 19372 chr3 39014149 39014253 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -37785 NR_144400 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 5585 chr11 69008881 69009034 + 0 NA intron (NM_145015, intron 2 of 2) intron (NM_145015, intron 2 of 2) -3397 NR_120541 101928200 Hs.703759 NR_120541 ENSG00000256508 MRGPRF-AS1 - MRGPRF antisense RNA 1 ncRNA 14809 chr19 55280086 55280238 + 0 NA promoter-TSS (NM_001297600) promoter-TSS (NM_001297600) 221 NM_012267 23640 Hs.53066 NM_012267 ENSG00000133265 HSPBP1 FES1 HSPA (Hsp70) binding protein 1 protein-coding 30600 chrX 31209386 31209490 + 0 NA intron (NM_004012, intron 37 of 50) intron (NM_004012, intron 37 of 50) 57469 NM_004015 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 26728 chr7 101244704 101244766 + 0 NA intron (NM_016068, intron 1 of 4) intron (NM_016068, intron 1 of 4) 355 NM_016068 51024 Hs.423968 NM_016068 ENSG00000214253 FIS1 CGI-135|TTC11 fission, mitochondrial 1 protein-coding 11497 chr16 67404856 67404899 + 0 NA intron (NM_001323627, intron 3 of 11) intron (NM_001323627, intron 3 of 11) -11342 NM_016140 51673 Hs.534458 NM_015964 ENSG00000159713 TPPP3 CGI-38|TPPP/p20|p20|p25gamma tubulin polymerization promoting protein family member 3 protein-coding 380 chr1 24417062 24417166 + 0 NA intron (NM_001322856, intron 2 of 12) intron (NM_001322856, intron 2 of 12) 1089 NM_001322857 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 1279 chr1 89890254 89890387 + 0 NA intron (NM_018103, intron 2 of 2) Tigger15a|DNA|TcMar-Tigger 68399 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 family member D protein-coding 3206 chr10 4354595 4354699 + 0 NA Intergenic L2b|LINE|L2 -29599 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 12495 chr17 41679267 41679363 + 0 NA Intergenic LTR73|LTR|ERV1 -9560 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 18903 chr22 38794118 38794218 + 0 NA promoter-TSS (NM_005740) promoter-TSS (NM_005740) -12 NM_005740 10126 Hs.632766 NM_005740 ENSG00000100246 DNAL4 MRMV3|PIG27 dynein axonemal light chain 4 protein-coding 20709 chr3 177449497 177449632 + 0 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 7643 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1395 chr1 99646062 99646200 + 0 NA 5' UTR (NM_017734, exon 1 of 8) 5' UTR (NM_017734, exon 1 of 8) 256 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 286 chr1 19644212 19644248 + 0 NA promoter-TSS (NM_005380) promoter-TSS (NM_005380) 57 NM_005380 4681 Hs.654502 NM_005380 ENSG00000158747 NBL1 D1S1733E|DAN|DAND1|NB|NO3 neuroblastoma 1, DAN family BMP antagonist protein-coding 2426 chr1 203316850 203316940 + 0 NA Intergenic Intergenic 11359 NM_006763 7832 Hs.519162 NM_006763 ENSG00000159388 BTG2 APRO1|PC3|TIS21 BTG anti-proliferation factor 2 protein-coding 10606 chr15 84992553 84992657 + 0 NA intron (NM_002605, intron 1 of 21) intron (NM_002605, intron 1 of 21) 10631 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 16117 chr2 110115749 110115815 + 0 NA exon (NM_005434, exon 1 of 4) exon (NM_005434, exon 1 of 4) 784 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T-cell differentiation protein like protein-coding 29331 chr9 78871996 78872012 + 0 NA Intergenic Intergenic 273662 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 25442 chr6 160792007 160792154 + 0 NA Intergenic HERVIP10FH-int|LTR|ERV1 89887 NM_001168338 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 4469 chr10 119165637 119165741 + 0 NA promoter-TSS (NM_213649) promoter-TSS (NM_213649) 3 NM_213649 119559 Hs.655168 NM_178867 ENSG00000183605 SFXN4 BCRM1|COXPD18 sideroflexin 4 protein-coding 13242 chr18 7301039 7301136 + 0 NA Intergenic Intergenic 69948 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 6443 chr12 1662036 1662220 + 0 NA Intergenic CpG -1748 NR_037422 100500816 NR_037422 ENSG00000266043 MIR3649 - microRNA 3649 ncRNA 19562 chr3 53270066 53270215 + 0 NA Intergenic Intergenic -14026 NR_047580 7086 Hs.89643 NM_001064 ENSG00000163931 TKT HEL-S-48|HEL107|SDDHD|TK|TKT1 transketolase protein-coding 6277 chr11 125062952 125063188 + 0 NA promoter-TSS (NM_001145290) promoter-TSS (NM_001145290) -47 NM_001145290 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 13012 chr17 75601329 75601480 + 0 NA intron (NM_001309242, intron 13 of 62) intron (NM_001309242, intron 13 of 62) 13346 NM_001309242 80022 Hs.390817 NM_001080847 ENSG00000266714 MYO15B MYO15BP myosin XVB protein-coding 30711 chrX 49166646 49166750 + 0 NA 3' UTR (NM_001099681, exon 5 of 5) 3' UTR (NM_001099681, exon 5 of 5) 3855 NM_001099681 79917 Hs.193170 NM_024859 ENSG00000269313 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 15596 chr2 58241333 58241464 + 0 NA promoter-TSS (NM_001114636) promoter-TSS (NM_001114636) -18 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG Fanconi anemia complementation group L protein-coding 4563 chr10 124627166 124627351 + 0 NA intron (NM_014661, intron 4 of 4) intron (NM_014661, intron 4 of 4) -76770 NR_120631 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 607 chr1 35085509 35085729 + 0 NA intron (NM_001319955, intron 1 of 8) intron (NM_001319955, intron 1 of 8) 6256 NM_001289090 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 24105 chr6 16215657 16215731 + 0 NA Intergenic Intergenic -22886 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 23313 chr5 138753002 138753146 + 0 NA promoter-TSS (NM_001903) promoter-TSS (NM_001903) 235 NR_134245 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 23434 chr5 146027992 146028087 + 0 NA intron (NM_152550, intron 5 of 9) intron (NM_152550, intron 5 of 9) 76344 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 2902 chr1 228831266 228831370 + 0 NA Intergenic Intergenic 96241 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 11884 chr17 981095 981247 + 0 NA Intergenic Intergenic -1413 NM_022463 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 19536 chr3 52046572 52046642 + 0 NA Intergenic Intergenic 9838 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 22864 chr5 90409947 90410107 + 0 NA promoter-TSS (NM_001297765) promoter-TSS (NM_001297765) 27 NR_105024 731157 Hs.551062 NR_105024 ENSG00000255647 LOC731157 - uncharacterized LOC731157 ncRNA 30866 chrX 86047295 86047329 + 0 NA promoter-TSS (NM_001320959) promoter-TSS (NM_001320959) 13 NM_001320959 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM, Rab escort protein 1 protein-coding 3093 chr1 242826181 242826285 + 0 NA Intergenic Intergenic 275511 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 15877 chr2 84247847 84247896 + 0 NA Intergenic Intergenic -42811 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 24583 chr6 43096767 43096848 + 0 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) 19993 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 2508 chr1 206635385 206635525 + 0 NA promoter-TSS (NM_001004023) promoter-TSS (NM_001004023) -81 NM_003582 8444 Hs.164267 NM_003582 ENSG00000143479 DYRK3 DYRK5|RED|REDK|hYAK3-2 dual specificity tyrosine phosphorylation regulated kinase 3 protein-coding 15964 chr2 96208257 96208383 + 0 NA promoter-TSS (NR_046322) promoter-TSS (NR_046322) -96 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 5264 chr11 57293086 57293204 + 0 NA Intergenic Intergenic 31794 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 1073 chr1 67626597 67626701 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -58528 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 9408 chr14 76517082 76517198 + 0 NA Intergenic Intergenic 145793 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 2187 chr1 182181350 182181507 + 0 NA Intergenic MIR3|SINE|MIR -119716 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 25579 chr7 4189213 4189411 + 0 NA intron (NM_001079653, intron 9 of 19) intron (NM_001079653, intron 9 of 19) 59627 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 29994 chr9 116870683 116870862 + 0 NA intron (NM_014010, intron 9 of 21) intron (NM_014010, intron 9 of 21) 183470 NM_012210 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 16393 chr2 138949621 138949771 + 0 NA Intergenic Intergenic 52372 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 3860 chr10 71838385 71838489 + 0 NA intron (NM_001042465, intron 1 of 14) intron (NM_001042465, intron 1 of 14) 12938 NM_002778 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 31063 chrX 132001256 132001423 + 0 NA Intergenic Intergenic -21878 NM_001042453 51765 Hs.444247 NM_016542 ENSG00000134602 STK26 MASK|MST4 serine/threonine kinase 26 protein-coding 23622 chr5 159262626 159262780 + 0 NA promoter-TSS (NM_145049) promoter-TSS (NM_145049) -364 NM_145049 134510 Hs.591733 NM_145049 ENSG00000164332 UBLCP1 CPUB1 ubiquitin like domain containing CTD phosphatase 1 protein-coding 15164 chr2 20992415 20992519 + 0 NA Intergenic Intergenic 51606 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 15764 chr2 70258067 70258171 + 0 NA promoter-TSS (NM_016297) promoter-TSS (NM_016297) 20 NM_016297 51449 Hs.567502 NM_016297 ENSG00000116005 PCYOX1 PCL1 prenylcysteine oxidase 1 protein-coding 5307 chr11 59172089 59172193 + 0 NA promoter-TSS (NM_015177) promoter-TSS (NM_015177) -198 NM_015177 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 29009 chr9 27453961 27454022 + 0 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -70323 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 4260 chr10 102642156 102642260 + 0 NA Intergenic CpG -2287 NM_001345950 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 30217 chr9 129110994 129110994 + 0 NA promoter-TSS (NM_001271832) promoter-TSS (NM_001271832) 45 NM_021131 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 4010 chr10 84540145 84540249 + 0 NA Intergenic Intergenic 115015 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 10245 chr15 62737635 62737739 + 0 NA intron (NM_015059, intron 26 of 55) intron (NM_015059, intron 26 of 55) -86270 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 24170 chr6 20516439 20516543 + 0 NA Intergenic AluSx|SINE|Alu -17966 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 14283 chr19 18969782 18969791 + 0 NA Intergenic MER44B|DNA|TcMar-Tigger -28554 NM_004838 9454 Hs.720208 NM_004838 ENSG00000051128 HOMER3 HOMER-3|VESL3 homer scaffolding protein 3 protein-coding 28702 chr8 131421922 131422049 + 0 NA Intergenic Intergenic -381396 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 6864 chr12 38385019 38385178 + 0 NA Intergenic L1PB1|LINE|L1 68343 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 20208 chr3 134795016 134795100 + 0 NA promoter-TSS (NM_004441) promoter-TSS (NM_004441) -199 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 16654 chr2 172102849 172103026 + 0 NA promoter-TSS (NM_004405) promoter-TSS (NM_004405) -69 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 6723 chr12 21437572 21437716 + 0 NA promoter-TSS (NM_024854) promoter-TSS (NM_024854) 40 NM_024854 79912 Hs.709545 NM_024854 ENSG00000121350 PYROXD1 MFM8 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 28690 chr8 130611848 130611952 + 0 NA Intergenic MLT2B4|LTR|ERVL -168240 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 27216 chr7 150323510 150323614 + 0 NA 5' UTR (NM_001164458, exon 1 of 8) 5' UTR (NM_001164458, exon 1 of 8) 107 NM_001164458 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C protein-coding 26288 chr7 54260957 54261061 + 0 NA Intergenic L1MD2|LINE|L1 -58588 NR_004422 3262 Hs.742598 NR_004422 HPVC1 HPV18E5L|PE5L human papillomavirus (type 18) E5 central sequence-like 1 ncRNA 10599 chr15 84654264 84654399 + 0 NA promoter-TSS (NR_130944) promoter-TSS (NR_130944) 12 NM_032856 84942 Hs.745027 NM_032856 ENSG00000177082 WDR73 GAMOS|HSPC264 WD repeat domain 73 protein-coding 16550 chr2 160647256 160647396 + 0 NA Intergenic Intergenic -153519 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 30404 chrUn_GL000214v1 131704 131858 + 0 NA NA ACRO1|Satellite|acro NA NA 23106 chr5 122774983 122775108 + 0 NA promoter-TSS (NM_003100) promoter-TSS (NM_003100) 49 NM_003100 6643 Hs.125352 NM_003100 ENSG00000205302 SNX2 TRG-9 sorting nexin 2 protein-coding 30957 chrX 109268446 109268550 + 0 NA Intergenic Intergenic 213558 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 25411 chr6 158068871 158068982 + 0 NA intron (NM_001178088, intron 12 of 25) intron (NM_001178088, intron 12 of 25) 51878 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 23340 chr5 140165240 140165278 + 0 NA intron (NR_130738, intron 2 of 4) L2a|LINE|L2 7940 NR_130738 101929719 Hs.150064 NR_130738 ENSG00000254363 LOC101929719 - uncharacterized LOC101929719 ncRNA 11072 chr16 18790346 18790474 + 0 NA promoter-TSS (NM_001019) promoter-TSS (NM_001019) -76 NM_001019 6210 Hs.370504 NM_001019 ENSG00000134419 RPS15A S15a ribosomal protein S15a protein-coding 13856 chr19 1183932 1184060 + 0 NA Intergenic Intergenic -9713 NM_014963 22904 Hs.408708 NM_014963 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 protein-coding 29487 chr9 88477556 88477660 + 0 NA 3' UTR (NM_006717, exon 6 of 6) 3' UTR (NM_006717, exon 6 of 6) -57493 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2 nucleoredoxin-like 2 protein-coding 2338 chr1 199859563 199859667 + 0 NA Intergenic Intergenic -167987 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 9952 chr15 41139190 41139294 + 0 NA Intergenic MER41B|LTR|ERV1 -22996 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 13222 chr18 3297428 3297635 + 0 NA Intergenic L1PB3|LINE|L1 34812 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 13406 chr18 32018691 32018764 + 0 NA 5' UTR (NM_017831, exon 1 of 6) 5' UTR (NM_017831, exon 1 of 6) 245 NM_017831 54941 Hs.633703 NM_017831 ENSG00000101695 RNF125 TNORS|TRAC-1|TRAC1 ring finger protein 125 protein-coding 12969 chr17 74282945 74283070 + 0 NA intron (NM_023036, intron 2 of 13) intron (NM_023036, intron 2 of 13) 8760 NM_001172810 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 14038 chr19 8513709 8513881 + 0 NA intron (NM_032370, intron 1 of 5) CpG 369 NM_032370 84330 Hs.515114 NM_032370 ENSG00000133250 ZNF414 ZFP414 zinc finger protein 414 protein-coding 8129 chr13 38395002 38395146 + 0 NA Intergenic Intergenic 45303 NM_001286703 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20 ubiquitin fold modifier 1 protein-coding 15985 chr2 96960502 96960648 + 0 NA intron (NM_001122646, intron 5 of 16) intron (NM_001122646, intron 5 of 16) 25989 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 22717 chr5 73565715 73565842 + 0 NA promoter-TSS (NM_001284430) promoter-TSS (NM_001284430) 37 NM_032175 84135 Hs.406703 NM_032175 ENSG00000164338 UTP15 NET21 UTP15, small subunit processome component protein-coding 8335 chr13 71358387 71358491 + 0 NA Intergenic Intergenic 343298 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 11115 chr16 21599402 21599563 + 0 NA promoter-TSS (NR_110930) promoter-TSS (NR_110930) 6 NM_016025 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 26968 chr7 127651939 127652105 + 0 NA promoter-TSS (NM_014390) promoter-TSS (NM_014390) 33 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 17716 chr20 19735586 19735715 + 0 NA Intergenic Intergenic -150871 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 19815 chr3 106765439 106765543 + 0 NA Intergenic LTR18A|LTR|ERVL 475147 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 1581 chr1 116696754 116696858 + 0 NA intron (NM_001013643, intron 2 of 3) intron (NM_001013643, intron 2 of 3) 2694 NM_001013643 388667 Hs.127851 NM_001013643 C1orf137 - chromosome 1 open reading frame 137 protein-coding 2147 chr1 179931031 179931180 + 0 NA Intergenic Intergenic -23668 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 12866 chr17 65359206 65359322 + 0 NA Intergenic MER74A|LTR|ERVL -98277 NR_131984 105827617 NR_131984 ENSG00000263520 CRAT40 - cervical cancer-associated transcript 40 ncRNA 22088 chr4 184328246 184328413 + 0 NA Intergenic Intergenic 25648 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LOC728175 - uncharacterized LOC728175 ncRNA 7589 chr12 106774129 106774354 + 0 NA promoter-TSS (NM_001330147) promoter-TSS (NM_001330147) -315 NM_001330146 55188 Hs.131306 NM_018157 ENSG00000111785 RIC8B RIC8|hSyn RIC8 guanine nucleotide exchange factor B protein-coding 6163 chr11 118565960 118566109 + 0 NA promoter-TSS (NM_001168618) promoter-TSS (NM_001168618) 42 NM_001168618 56912 Hs.533738 NM_020153 ENSG00000118096 IFT46 C11orf2|C11orf60|CFAP32 intraflagellar transport 46 protein-coding 27492 chr8 20145422 20145526 + 0 NA 3' UTR (NM_001135691, exon 17 of 17) 3' UTR (NM_001135691, exon 17 of 17) 37732 NM_001135691 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 17172 chr2 223825446 223825550 + 0 NA intron (NR_110906, intron 1 of 3) intron (NR_110906, intron 1 of 3) 12104 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 sigma 3 subunit protein-coding 20769 chr3 182118271 182118375 + 0 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 165959 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 19516 chr3 50316956 50317008 + 0 NA TTS (NM_003773) TTS (NM_003773) -4601 NM_153281 3373 Hs.75619 NM_033159 ENSG00000114378 HYAL1 HYAL-1|LUCA1|MPS9|NAT6 hyaluronoglucosaminidase 1 protein-coding 4096 chr10 93496405 93496558 + 0 NA promoter-TSS (NM_001127182) promoter-TSS (NM_001127182) -131 NM_001127182 55165 Hs.14559 NM_018131 ENSG00000138180 CEP55 C10orf3|CT111|URCC6 centrosomal protein 55 protein-coding 4736 chr11 5624882 5625025 + 0 NA promoter-TSS (NM_021616) promoter-TSS (NM_021616) -24 NM_021616 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 1140 chr1 77412563 77412667 + 0 NA intron (NM_174858, intron 7 of 13) intron (NM_174858, intron 7 of 13) 130013 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 8272 chr13 49997304 49997408 + 0 NA promoter-TSS (NR_037407) promoter-TSS (NR_037407) 349 NM_213590 10206 Hs.436922 NM_005798 ENSG00000204977 TRIM13 CAR|DLEU5|LEU5|RFP2|RNF77 tripartite motif containing 13 protein-coding 3417 chr10 23095507 23095661 + 0 NA promoter-TSS (NM_012228) promoter-TSS (NM_012228) 86 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 30821 chrX 72126750 72126878 + 0 NA TTS (NM_001024455) TTS (NM_001024455) 5087 NM_001024455 340526 Hs.512180 NM_001024455 ENSG00000242732 RGAG4 6430402L03Rik|MAR5|MART5 retrotransposon gag domain containing 4 protein-coding 25073 chr6 119349706 119349875 + 0 NA promoter-TSS (NM_005907) promoter-TSS (NM_005907) -24 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 24784 chr6 72623218 72623265 + 0 NA intron (NM_001160133, intron 1 of 14) CpG 1398 NM_001160134 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5 potassium voltage-gated channel subfamily Q member 5 protein-coding 24328 chr6 30614956 30615060 + 0 NA intron (NM_002714, intron 2 of 19).6 intron (NM_002714, intron 2 of 19).6 2299 NM_002714 5514 Hs.106019 NM_002714 ENSG00000204569 PPP1R10 CAT53|FB19|PNUTS|PP1R10|R111|p99 protein phosphatase 1 regulatory subunit 10 protein-coding 21681 chr4 107931490 107931594 + 0 NA promoter-TSS (NM_183075) promoter-TSS (NM_183075) -19 NM_183075 113612 Hs.109087 NM_183075 ENSG00000155016 CYP2U1 P450TEC|SPG49|SPG56 cytochrome P450 family 2 subfamily U member 1 protein-coding 8755 chr14 24195345 24195417 + 0 NA 5' UTR (NM_006405, exon 1 of 6) 5' UTR (NM_006405, exon 1 of 6) 355 NM_001289006 10548 Hs.91586 NM_006405 ENSG00000100926 TM9SF1 HMP70|MP70 transmembrane 9 superfamily member 1 protein-coding 25987 chr7 31419039 31419131 + 0 NA Intergenic L2a|LINE|L2 -78161 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 1731 chr1 151999089 151999193 + 0 NA Intergenic Intergenic -4903 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 7158 chr12 57175601 57175748 + 0 NA exon (NM_002332, exon 23 of 89) exon (NM_002332, exon 23 of 89) -18830 NR_031597 100302201 NR_031597 ENSG00000221365 MIR1228 MIRN1228|hsa-mir-1228|mir-1228 microRNA 1228 ncRNA 17216 chr2 227164181 227164285 + 0 NA promoter-TSS (NM_000091) promoter-TSS (NM_000091) 326 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 CA44 collagen type IV alpha 4 chain protein-coding 24898 chr6 87929897 87930040 + 0 NA Intergenic Intergenic -117821 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 1500 chr1 110630868 110631027 + 0 NA intron (NM_001204269, intron 1 of 4) intron (NM_001204269, intron 1 of 4) 527 NM_001204269 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 26431 chr7 74994031 74994138 + 0 NA intron (NM_001145064, intron 1 of 8) intron (NM_001145064, intron 1 of 8) 29266 NM_001145064 729438 Hs.594823 NM_001145064 ENSG00000274070 GATSL2 CASTOR2|GATSL1 GATS protein like 2 protein-coding 23248 chr5 134465908 134466014 + 0 NA Intergenic CpG -30914 NR_105044 102546229 NR_105044 LOC102546229 - uncharacterized LOC102546229 ncRNA 23884 chr6 2589219 2589323 + 0 NA Intergenic L1MA9|LINE|L1 45332 NR_131168 154386 Hs.680574 NM_152554 ENSG00000164385 LINC01600 C6orf195|bA145H9.2 long intergenic non-protein coding RNA 1600 ncRNA 20336 chr3 146161056 146161109 + 0 NA 5' UTR (NM_000935, exon 1 of 19) 5' UTR (NM_000935, exon 1 of 19) 413 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 16802 chr2 188292093 188292124 + 0 NA promoter-TSS (NR_045563) promoter-TSS (NR_045563) 439 NM_016315 51454 Hs.470887 NM_016315 ENSG00000144366 GULP1 CED-6|CED6|GULP GULP, engulfment adaptor PTB domain containing 1 protein-coding 14746 chr19 51704249 51704380 + 0 NA exon (NM_001316994, exon 8 of 9) exon (NM_001316994, exon 8 of 9) -10858 NR_108100 102238594 Hs.640185 NR_108100 ENSG00000269959 SPACA6P-AS LINC01129 SPACA6P antisense RNA ncRNA 23697 chr5 170184186 170184297 + 0 NA Intergenic Intergenic 14900 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 15520 chr2 48314254 48314432 + 0 NA promoter-TSS (NM_002158) promoter-TSS (NM_002158) -313 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 20648 chr3 171753071 171753141 + 0 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 57388 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 - phospholipase D1 protein-coding 4175 chr10 97736986 97737176 + 0 NA promoter-TSS (NM_001174122) promoter-TSS (NM_001174122) -40 NM_001174121 118813 Hs.744075 NM_144588 ENSG00000155256 ZFYVE27 PROTRUDIN|SPG33 zinc finger FYVE-type containing 27 protein-coding 21000 chr3 193805572 193805676 + 0 NA Intergenic Intergenic -178292 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 21706 chr4 112145382 112145518 + 0 NA promoter-TSS (NM_152400) promoter-TSS (NM_152400) 53 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 C4orf32 - chromosome 4 open reading frame 32 protein-coding 4073 chr10 92087822 92087971 + 0 NA intron (NM_014912, intron 8 of 9) intron (NM_014912, intron 8 of 9) 155383 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 11121 chr16 22206091 22206220 + 0 NA promoter-TSS (NM_013302) promoter-TSS (NM_013302) -116 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 28070 chr8 79853940 79854044 + 0 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 17745 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 5403 chr11 63667978 63668082 + 0 NA intron (NM_001290048, intron 1 of 12) intron (NM_001290048, intron 1 of 12) 3700 NM_015459 25923 Hs.356719 NM_015459 ENSG00000184743 ATL3 HSN1F atlastin GTPase 3 protein-coding 8679 chr14 21042099 21042223 + 0 NA promoter-TSS (NM_032572) promoter-TSS (NM_032572) -65 NM_032572 84659 Hs.525206 NM_032572 ENSG00000165799 RNASE7 RAE1 ribonuclease A family member 7 protein-coding 30354 chr9 136245752 136245856 + 0 NA promoter-TSS (NM_181701) promoter-TSS (NM_181701) 37 NM_181701 169714 Hs.144073 NM_181701 ENSG00000165661 QSOX2 QSCN6L1|SOXN quiescin sulfhydryl oxidase 2 protein-coding 8702 chr14 22614289 22614440 + 0 NA Intergenic Intergenic 16126 NM_022060 63874 Hs.445665 NM_022060 ENSG00000100439 ABHD4 ABH4 abhydrolase domain containing 4 protein-coding 14957 chr2 9163929 9163965 + 0 NA Intergenic MIR|SINE|MIR -42818 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 6018 chr11 107562959 107563065 + 0 NA intron (NM_001301010, intron 1 of 11) intron (NM_001301010, intron 1 of 11) 2723 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9 alkB homolog 8, tRNA methyltransferase protein-coding 16924 chr2 201258274 201258433 + 0 NA non-coding (NR_111983, exon 1 of 9) non-coding (NR_111983, exon 1 of 9) 322 NR_111983 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 29076 chr9 35604109 35604312 + 0 NA Intergenic CpG -1074 NM_006285 7016 Hs.708096 NM_006285 ENSG00000107140 TESK1 - testis-specific kinase 1 protein-coding 28865 chr9 447782 447886 + 0 NA intron (NM_001193536, intron 43 of 46) Tigger13a|DNA|TcMar-Tigger -22460 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 19471 chr3 48507626 48507774 + 0 NA Intergenic Intergenic -2874 NM_001272066 51246 Hs.414579 NM_016479 ENSG00000164054 SHISA5 SCOTIN shisa family member 5 protein-coding 3271 chr10 9238218 9238318 + 0 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -37345 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 15870 chr2 81658348 81658525 + 0 NA Intergenic LTR10F|LTR|ERV1 -191490 NR_110161 100507201 Hs.98589 NR_110161 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 29740 chr9 105282076 105282180 + 0 NA intron (NM_001286730, intron 1 of 15) intron (NM_001286730, intron 1 of 15) 37515 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 21532 chr4 83889946 83890050 + 0 NA Intergenic L1MA10|LINE|L1 353681 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 29023 chr9 32384504 32384602 + 0 NA promoter-TSS (NM_001278352) promoter-TSS (NM_001278352) -50 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 26261 chr7 50468135 50468220 + 0 NA intron (NM_001082971, intron 12 of 14) CpG -17771 NM_001287495 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 22793 chr5 81165627 81165731 + 0 NA intron (NM_006909, intron 17 of 26) intron (NM_006909, intron 17 of 26) -67641 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 6219 chr11 121452128 121452208 + 0 NA promoter-TSS (NM_003105) promoter-TSS (NM_003105) -35 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 12004 chr17 6444214 6444348 + 0 NA promoter-TSS (NM_001195228) promoter-TSS (NM_001195228) -134 NM_001195228 54478 Hs.592116 NM_019013 ENSG00000129195 FAM64A CATS|RCS1 family with sequence similarity 64 member A protein-coding 22565 chr5 57032288 57032461 + 0 NA Intergenic Intergenic -80244 NM_152622 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 21043 chr3 196108396 196108491 + 0 NA Intergenic Intergenic -26282 NM_001313965 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 13566 chr18 50161954 50162085 + 0 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 33062 NM_001080467 4645 Hs.720076 NM_001080467 ENSG00000167306 MYO5B - myosin VB protein-coding 12674 chr17 50482687 50482791 + 0 NA intron (NM_018346, intron 5 of 8) intron (NM_018346, intron 5 of 8) 3939 NR_130911 55316 Hs.8033 NM_018346 ENSG00000136444 RSAD1 - radical S-adenosyl methionine domain containing 1 protein-coding 4807 chr11 10122940 10123044 + 0 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 171215 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 24722 chr6 54846522 54846694 + 0 NA promoter-TSS (NM_001010872) promoter-TSS (NM_001010872) -163 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 17534 chr20 5750343 5750369 + 0 NA promoter-TSS (NM_001303479) promoter-TSS (NM_001303479) -31 NM_152504 149840 Hs.529340 NM_152504 ENSG00000171984 C20orf196 - chromosome 20 open reading frame 196 protein-coding 2938 chr1 231040150 231040281 + 0 NA promoter-TSS (NM_198552) promoter-TSS (NM_198552) 34 NM_198552 375061 Hs.38516 NM_198552 ENSG00000182118 FAM89A C1orf153 family with sequence similarity 89 member A protein-coding 30510 chrX 14398858 14398890 + 0 NA Intergenic Intergenic -130424 NM_001118885 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 3915 chr10 74826394 74826541 + 0 NA promoter-TSS (NM_001256468) promoter-TSS (NM_001256468) 54 NM_012330 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 23667 chr5 167804978 167805082 + 0 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 50094 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 4516 chr10 121579719 121579823 + 0 NA intron (NM_001144914, intron 1 of 14) intron (NM_001144914, intron 1 of 14) 14196 NM_001144913 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 10462 chr15 75108575 75108646 + 0 NA Intergenic Intergenic 65341 NM_001301105 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 19692 chr3 86991161 86991202 + 0 NA promoter-TSS (NM_001320493) promoter-TSS (NM_001320493) -58 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 16087 chr2 108412960 108413064 + 0 NA Intergenic Intergenic 35101 NR_135779 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 5151 chr11 35082618 35082790 + 0 NA Intergenic Intergenic 55328 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 21152 chr4 7402574 7402678 + 0 NA intron (NM_020777, intron 2 of 26) intron (NM_020777, intron 2 of 26) 32347 NM_001085382 768239 Hs.662523 NM_001085382 ENSG00000178597 PSAPL1 - prosaposin-like 1 (gene/pseudogene) protein-coding 26721 chr7 101100283 101100428 + 0 NA Intergenic Intergenic 14916 NM_030961 81844 Hs.521092 NM_030961 ENSG00000169871 TRIM56 RNF109 tripartite motif containing 56 protein-coding 6692 chr12 15956557 15956709 + 0 NA intron (NM_015954, intron 1 of 8) intron (NM_015954, intron 1 of 8) 45461 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 10552 chr15 81134152 81134256 + 0 NA promoter-TSS (NM_173528) promoter-TSS (NM_173528) -99 NM_173528 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 16800 chr2 188199979 188199993 + 0 NA intron (NR_126396, intron 1 of 2) L2a|LINE|L2 87705 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 13429 chr18 34979235 34979388 + 0 NA intron (NM_001143827, intron 1 of 7) intron (NM_001143827, intron 1 of 7) 1067 NM_001143827 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 24789 chr6 73264514 73264705 + 0 NA intron (NM_001251874, intron 2 of 4) intron (NM_001251874, intron 2 of 4) -1413 NM_030568 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|NDG1|bA257K9.4 KH homology domain containing 1 protein-coding 25322 chr6 149923133 149923223 + 0 NA promoter-TSS (NR_130110) promoter-TSS (NR_130110) -26 NR_130110 353091 Hs.535023 NM_001001788 ENSG00000203722 RAET1G ULBP5 retinoic acid early transcript 1G protein-coding 1594 chr1 117826571 117826675 + 0 NA Intergenic Intergenic 103056 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3 ganglioside induced differentiation associated protein 2 protein-coding 28898 chr9 4985109 4985245 + 0 NA promoter-TSS (NM_004972) promoter-TSS (NM_004972) -53 NM_001322199 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 28004 chr8 70839820 70839916 + 0 NA Intergenic Intergenic 170421 NM_001287260 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 27810 chr8 51962657 51962686 + 0 NA Intergenic Intergenic -63485 NM_001286783 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 25296 chr6 148191926 148192059 + 0 NA Intergenic Intergenic -80284 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 369 chr1 24143139 24143243 + 0 NA promoter-TSS (NM_021258) promoter-TSS (NM_021258) 94 NM_021258 58985 Hs.110915 NM_021258 ENSG00000142677 IL22RA1 CRF2-9|IL22R|IL22R1 interleukin 22 receptor subunit alpha 1 protein-coding 1548 chr1 114581693 114581848 + 0 NA promoter-TSS (NM_005872) promoter-TSS (NM_005872) -126 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2, pre-mRNA processing factor protein-coding 22758 chr5 77030268 77030396 + 0 NA promoter-TSS (NM_018046) promoter-TSS (NM_018046) -53 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 20886 chr3 187745700 187745731 + 0 NA promoter-TSS (NM_001706) promoter-TSS (NM_001706) 10 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 3900 chr10 73811757 73811877 + 0 NA promoter-TSS (NM_003635) promoter-TSS (NM_003635) 14 NM_003635 8509 Hs.654758 NM_003635 ENSG00000166507 NDST2 HSST2|NST2 N-deacetylase and N-sulfotransferase 2 protein-coding 5434 chr11 64317544 64317698 + 0 NA promoter-TSS (NM_181652) promoter-TSS (NM_181652) 463 NM_001286082 51504 Hs.333579 NM_016404 ENSG00000173113 TRMT112 HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112 tRNA methyltransferase 11-2 homolog (S. cerevisiae) protein-coding 4053 chr10 89701444 89701582 + 0 NA promoter-TSS (NM_001284259) promoter-TSS (NM_001284259) -77 NM_001284259 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 1823 chr1 155745647 155745746 + 0 NA promoter-TSS (NR_024117).2 promoter-TSS (NR_024117).2 -72 NR_024117 100129405 Hs.656361 NR_024117 MSTO2P MSTO2 misato family member 2, pseudogene pseudo 5026 chr11 26028654 26028758 + 0 NA Intergenic MER45C|DNA|hAT-Tip100 -160417 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 22306 chr5 19018999 19019103 + 0 NA Intergenic Intergenic 867221 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 18282 chr20 55540222 55540326 + 0 NA Intergenic Intergenic -113077 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 27773 chr8 47738347 47738489 + 0 NA promoter-TSS (NM_005195) promoter-TSS (NM_005195) -254 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 25863 chr7 23597291 23597413 + 0 NA promoter-TSS (NM_138771) promoter-TSS (NM_138771) -27 NM_138771 90693 Hs.232296 NM_138771 ENSG00000169193 CCDC126 - coiled-coil domain containing 126 protein-coding 6613 chr12 12357026 12357130 + 0 NA promoter-TSS (NR_024061) promoter-TSS (NR_024061) -1 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 5975 chr11 102564224 102564391 + 0 NA Intergenic Intergenic -33554 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 27605 chr8 27675261 27675365 + 0 NA intron (NM_182826, intron 5 of 5) intron (NM_182826, intron 5 of 5) -26364 NR_037417 100500858 NR_037417 ENSG00000279302 MIR3622A mir-3622a microRNA 3622a ncRNA 8527 chr13 102707627 102707731 + 0 NA Intergenic Intergenic -13158 NM_001010977 196541 Hs.508623 NM_001010977 ENSG00000139780 METTL21C C13orf39 methyltransferase like 21C protein-coding 12060 chr17 7915897 7915938 + 0 NA promoter-TSS (NR_024349) promoter-TSS (NR_024349) 30 NR_024349 284023 Hs.744470 NR_024349 ENSG00000179859 LOC284023 - uncharacterized LOC284023 ncRNA 28081 chr8 80348014 80348128 + 0 NA Intergenic Intergenic 106682 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 30066 chr9 122810407 122810511 + 0 NA Intergenic Intergenic 10336 NM_080859 392392 Hs.632681 NM_080859 ENSG00000165204 OR1K1 hg99 olfactory receptor family 1 subfamily K member 1 protein-coding 29663 chr9 98146250 98146451 + 0 NA intron (NM_003389, intron 2 of 11) intron (NM_003389, intron 2 of 11) 26542 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 10121 chr15 52568236 52568340 + 0 NA intron (NM_001306191, intron 3 of 5) intron (NM_001306191, intron 3 of 5) 544 NM_001330309 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 26583 chr7 92076560 92076732 + 0 NA intron (NM_005751, intron 28 of 49) intron (NM_005751, intron 28 of 49) 57880 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 1496 chr1 110475584 110475688 + 0 NA Intergenic Intergenic -5130 NR_003599 643160 Hs.532720 NR_003599 ENSG00000240194 CYMP - chymosin pseudogene pseudo 8864 chr14 35341716 35341820 + 0 NA Intergenic Intergenic 49451 NM_002791 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 23818 chr5 179550767 179550851 + 0 NA exon (NM_025158, exon 1 of 18) exon (NM_025158, exon 1 of 18) 248 NM_025158 80230 Hs.306769 NM_025158 ENSG00000176783 RUFY1 RABIP4|ZFYVE12 RUN and FYVE domain containing 1 protein-coding 30499 chrX 13101870 13101945 + 0 NA Intergenic Intergenic -57109 NM_174901 171484 Hs.667546 NM_174901 ENSG00000187268 FAM9C TEX39C family with sequence similarity 9 member C protein-coding 26285 chr7 51376557 51376679 + 0 NA Intergenic LTR37A|LTR|ERV1 -59757 NM_001287436 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 22538 chr5 54881491 54881514 + 0 NA Intergenic Intergenic 104084 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 1014 chr1 63894077 63894181 + 0 NA intron (NM_005012, intron 1 of 8) Tigger7|DNA|TcMar-Tigger 120110 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 2282 chr1 193558625 193558729 + 0 NA Intergenic Intergenic 253932 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 31088 chrX 135032184 135032352 + 0 NA promoter-TSS (NM_001078171) promoter-TSS (NM_001078171) -35 NM_001078171 8933 Hs.522789 NM_003928 ENSG00000134590 FAM127A CXX1|MAR8C|MART8C|Mar8|Mart8 family with sequence similarity 127 member A protein-coding 23403 chr5 142681012 142681165 + 0 NA intron (NM_001144935, intron 1 of 3) intron (NM_001144935, intron 1 of 3) 4615 NM_001257209 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 2529 chr1 207828668 207828772 + 0 NA Intergenic Tigger16a|DNA|TcMar-Tigger -6017 NR_135298 100128537 Hs.445414 NR_135298 C1orf132 - chromosome 1 open reading frame 132 ncRNA 25175 chr6 134174833 134174932 + 0 NA promoter-TSS (NM_001291995) promoter-TSS (NM_001291995) 14 NM_005627 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 29112 chr9 41230310 41230443 + 0 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -3379 NR_039688 100616184 NR_039688 ENSG00000276029 MIR4477A - microRNA 4477a ncRNA 21731 chr4 117325143 117325247 + 0 NA Intergenic MER21B|LTR|ERVL -103203 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 7846 chr12 124626444 124626589 + 0 NA Intergenic Intergenic -59052 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 4677 chr11 1016773 1016927 + 0 NA exon (NM_005961, exon 31 of 33) exon (NM_005961, exon 31 of 33) 19856 NM_005961 4588 Hs.528432 NM_005961 ENSG00000184956 MUC6 MUC-6 mucin 6, oligomeric mucus/gel-forming protein-coding 30468 chrX 8273483 8273587 + 0 NA Intergenic Intergenic -102268 NM_016378 51480 Hs.279737 NM_016378 ENSG00000177504 VCX2 VCX-2r|VCX2R|VCXB variable charge, X-linked 2 protein-coding 13063 chr17 77958497 77958596 + 0 NA Intergenic CpG -45691 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing 6C protein-coding 25570 chr7 3216086 3216124 + 0 NA Intergenic Intergenic -57532 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 514 chr1 31111464 31111545 + 0 NA Intergenic L2c|LINE|L2 -45787 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1 pumilio RNA binding family member 1 protein-coding 610 chr1 35268557 35268711 + 0 NA promoter-TSS (NM_005095) promoter-TSS (NM_005095) -333 NM_005095 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 11306 chr16 48536501 48536581 + 0 NA Intergenic Intergenic 73668 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 20248 chr3 138774615 138774719 + 0 NA Intergenic Intergenic -15308 NM_006219 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 11477 chr16 66608670 66608814 + 0 NA intron (NR_037619, intron 2 of 4) intron (NR_037619, intron 2 of 4) 4011 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 29835 chr9 109440926 109441030 + 0 NA intron (NM_001145369, intron 2 of 20) MIRc|SINE|MIR 10406 NM_001145369 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 14320 chr19 27793897 27794017 + 0 NA promoter-TSS (NR_027301) promoter-TSS (NR_027301) -17 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 14788 chr19 54771187 54771317 + 0 NA promoter-TSS (NR_110737) promoter-TSS (NR_110737) -188 NR_110738 101928804 Hs.742628 NR_110737 LOC101928804 - uncharacterized LOC101928804 ncRNA 27356 chr8 8564644 8564662 + 0 NA Intergenic Intergenic -137503 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 14299 chr19 19606098 19606184 + 0 NA intron (NR_038198, intron 1 of 7) MLT1E1A|LTR|ERVL-MaLR 12775 NM_025245 80714 Hs.466257 NM_025245 ENSG00000105717 PBX4 - PBX homeobox 4 protein-coding 14152 chr19 12945727 12945816 + 0 NA promoter-TSS (NM_001270363) promoter-TSS (NM_001270363) -43 NM_001270362 5886 Hs.643267 NM_005053 ENSG00000179262 RAD23A HHR23A|HR23A RAD23 homolog A, nucleotide excision repair protein protein-coding 21345 chr4 49109700 49109804 + 0 NA Intergenic (CATTC)n|Satellite|Satellite 123110 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog protein-coding 10718 chr15 91456177 91456228 + 0 NA Intergenic L1PB1|LINE|L1 -7137 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 19551 chr3 52685871 52685968 + 0 NA promoter-TSS (NM_014366) promoter-TSS (NM_014366) -1 NM_206826 26354 Hs.313544 NM_014366 ENSG00000163938 GNL3 C77032|E2IG3|NNP47|NS G protein nucleolar 3 protein-coding 25402 chr6 157274854 157274868 + 0 NA Intergenic CpG 49398 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 6083 chr11 112074264 112074322 + 0 NA promoter-TSS (NM_001082619) promoter-TSS (NM_001082619) 49 NM_001082969 55216 Hs.195060 NM_018195 ENSG00000150776 C11orf57 - chromosome 11 open reading frame 57 protein-coding 3907 chr10 73932351 73932558 + 0 NA Intergenic Intergenic -9677 NM_001001791 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 bA417O11.3 chromosome 10 open reading frame 55 protein-coding 12132 chr17 15999653 15999790 + 0 NA promoter-TSS (NM_001042697) promoter-TSS (NM_001042697) -29 NM_001042697 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger SWIM-type containing 7 protein-coding 24083 chr6 14117628 14117772 + 0 NA promoter-TSS (NM_001040280) promoter-TSS (NM_001040280) 66 NM_004233 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 3857 chr10 71766804 71766914 + 0 NA intron (NM_022153, intron 1 of 6) intron (NM_022153, intron 1 of 6) 6721 NM_022153 64115 Hs.47382 NM_022153 ENSG00000107738 VSIR B7-H5|B7H5|C10orf54|DD1alpha|GI24|PD-1H|PP2135|SISP1|VISTA V-set immunoregulatory receptor protein-coding 21512 chr4 82430349 82430514 + 0 NA promoter-TSS (NM_001207000) promoter-TSS (NM_001207000) -49 NM_021204 58478 Hs.18442 NM_021204 ENSG00000145293 ENOPH1 E1|MASA|MST145|mtnC enolase-phosphatase 1 protein-coding 28215 chr8 94475050 94475212 + 0 NA promoter-TSS (NM_001205262) promoter-TSS (NM_001205262) -16 NM_001205262 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B (S. cerevisiae) protein-coding 8416 chr13 79647696 79647860 + 0 NA Intergenic Intergenic 81051 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 22996 chr5 108801906 108802010 + 0 NA intron (NM_001308028, intron 3 of 17) MER44C|DNA|TcMar-Tigger 53031 NM_001308028 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 21259 chr4 25312699 25312727 + 0 NA promoter-TSS (NM_001318148) promoter-TSS (NM_001318148) -61 NM_001318148 29063 Hs.278945 NM_024936 ENSG00000168228 ZCCHC4 HSPC052|ZGRF4 zinc finger CCHC-type containing 4 protein-coding 17749 chr20 21303217 21303361 + 0 NA promoter-TSS (NM_012255) promoter-TSS (NM_012255) 5 NM_012255 22803 Hs.255932 NM_012255 ENSG00000088930 XRN2 - 5'-3' exoribonuclease 2 protein-coding 17997 chr20 39029413 39029517 + 0 NA intron (NM_001190809, intron 18 of 20) L3|LINE|CR1 67127 NM_021931 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 14466 chr19 40719035 40719109 + 0 NA intron (NM_025194, intron 1 of 6) intron (NM_025194, intron 1 of 6) 1969 NM_025194 80271 Hs.515415 NM_025194 ENSG00000086544 ITPKC IP3-3KC|IP3KC inositol-trisphosphate 3-kinase C protein-coding 9235 chr14 65792366 65792470 + 0 NA Intergenic L2a|LINE|L2 321316 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 11491 chr16 67178257 67178408 + 0 NA exon (NM_001040715, exon 5 of 7) exon (NM_001040715, exon 5 of 7) 4479 NM_003946 8996 Hs.513667 NM_003946 ENSG00000140939 NOL3 ARC|FCM|MYP|NOP|NOP30 nucleolar protein 3 protein-coding 24088 chr6 14733189 14733293 + 0 NA Intergenic Intergenic -447787 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13906 chr19 2740027 2740195 + 0 NA promoter-TSS (NM_144564) promoter-TSS (NM_144564) -35 NM_144564 29985 Hs.515046 NM_144564 ENSG00000141873 SLC39A3 ZIP-3|ZIP3 solute carrier family 39 member 3 protein-coding 2384 chr1 201741954 201742058 + 0 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 2171 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 18520 chr21 37072978 37073112 + 0 NA promoter-TSS (NM_001320703) promoter-TSS (NM_001320703) 113 NM_016430 51227 Hs.656565 NM_016430 ENSG00000185808 PIGP DCRC|DCRC-S|DSCR5|DSRC|PIG-P phosphatidylinositol glycan anchor biosynthesis class P protein-coding 24918 chr6 90411528 90411528 + 0 NA Intergenic Intergenic 98786 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 15619 chr2 60961677 60961745 + 0 NA intron (NM_001322127, intron 8 of 16) intron (NM_001322127, intron 8 of 16) 55501 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridylate synthase 10 protein-coding 19486 chr3 49021895 49021999 + 0 NA promoter-TSS (NM_018114) promoter-TSS (NM_018114) 306 NM_199070 25915 Hs.31387 NM_199069 ENSG00000178057 NDUFAF3 2P1|C3orf60|E3-3 NADH:ubiquinone oxidoreductase complex assembly factor 3 protein-coding 18164 chr20 49768472 49768620 + 0 NA Intergenic Intergenic -44167 NR_048538 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 9042 chr14 54773448 54773453 + 0 NA intron (NM_001161577, intron 4 of 8) intron (NM_001161577, intron 4 of 8) 18662 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 11283 chr16 46972982 46973064 + 0 NA intron (NM_005880, intron 1 of 8) CpG 691 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 23131 chr5 125408870 125408958 + 0 NA Intergenic Intergenic -84347 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 11416 chr16 57186211 57186315 + 0 NA promoter-TSS (NM_024946) promoter-TSS (NM_024946) -21 NM_001305182 89970 Hs.460885 NM_133368 ENSG00000159579 RSPRY1 SEMDFA ring finger and SPRY domain containing 1 protein-coding 20267 chr3 139535127 139535231 + 0 NA intron (NM_001130992, intron 2 of 2) intron (NM_001130992, intron 2 of 2) 4650 NM_002899 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 8710 chr14 22871618 22871774 + 0 NA promoter-TSS (NM_014045) promoter-TSS (NM_014045) -21 NM_014045 26020 Hs.525232 NM_014045 ENSG00000197324 LRP10 LRP-10|LRP9|MST087|MSTP087 LDL receptor related protein 10 protein-coding 11604 chr16 72099424 72099528 + 0 NA intron (NM_014003, intron 7 of 26) intron (NM_014003, intron 7 of 26) -5160 NM_001142318 54957 Hs.134406 NM_017853 ENSG00000140830 TXNL4B DLP|Dim2 thioredoxin like 4B protein-coding 30418 chrUn_GL000224v1 4369 4523 + 0 NA Intergenic Intergenic -98057 NR_135481 100505874 Hs.559790 NR_135481 LOC100505874 - uncharacterized LOC100505874 ncRNA 2098 chr1 175192938 175193050 + 0 NA promoter-TSS (NM_001162895) promoter-TSS (NM_001162895) 99 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 3101 chr1 243927038 243927170 + 0 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 9702 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LOC339529 - uncharacterized LOC339529 ncRNA 11944 chr17 3846181 3846322 + 0 NA promoter-TSS (NM_001114118) promoter-TSS (NM_001114118) 0 NM_001114118 55421 Hs.120963 NM_018553 ENSG00000074356 NCBP3 C17orf85|ELG|HSA277841 nuclear cap binding subunit 3 protein-coding 6215 chr11 120807683 120807694 + 0 NA intron (NM_001282470, intron 3 of 19) intron (NM_001282470, intron 3 of 19) 11427 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 25680 chr7 12211175 12211305 + 0 NA promoter-TSS (NM_001134232) promoter-TSS (NM_001134232) 18 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B - transmembrane protein 106B protein-coding 24504 chr6 37819346 37819442 + 0 NA promoter-TSS (NM_021943) promoter-TSS (NM_021943) -137 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 24480 chr6 37024789 37024874 + 0 NA intron (NM_173558, intron 13 of 15) intron (NM_173558, intron 13 of 15) 19184 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 24604 chr6 43725185 43725310 + 0 NA Intergenic Intergenic -37435 NM_018135 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRPS18-3|S18bmt mitochondrial ribosomal protein S18A protein-coding 16893 chr2 199459642 199459694 + 0 NA intron (NM_015265, intron 2 of 11) CpG-16887 -1572 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 20699 chr3 176967652 176967756 + 0 NA Intergenic LTR32|LTR|ERVL -150703 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 17695 chr20 18225041 18225144 + 0 NA Intergenic Intergenic -63191 NM_001282996 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 21205 chr4 15906118 15906222 + 0 NA Intergenic Intergenic 32570 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 7171 chr12 57888627 57888731 + 0 NA Intergenic Intergenic -41715 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 6690 chr12 15882275 15882395 + 0 NA promoter-TSS (NM_007178) promoter-TSS (NM_007178) -19 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 20931 chr3 190064337 190064441 + 0 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) -56575 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 22705 chr5 72955782 72955923 + 0 NA promoter-TSS (NM_001146032) promoter-TSS (NM_001146032) -129 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 8357 chr13 74135602 74135706 + 0 NA Intergenic CpG -1725 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 5651 chr11 73598561 73598682 + 0 NA promoter-TSS (NM_001286050) promoter-TSS (NM_001286050) -432 NM_001286050 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 18664 chr22 21014258 21014362 + 0 NA promoter-TSS (NR_003608) promoter-TSS (NR_003608) -23 NR_003608 113691 Hs.585006 NR_003608 ENSG00000161149 TUBA3FP - tubulin alpha 3f pseudogene pseudo 23925 chr6 4357727 4357831 + 0 NA Intergenic Intergenic -70223 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 20279 chr3 141192363 141192519 + 0 NA Intergenic Intergenic -39384 NM_152282 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 12840 chr17 63842985 63843082 + 0 NA promoter-TSS (NM_001098426) promoter-TSS (NM_001098426) -42 NM_001098426 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 23675 chr5 168301910 168302064 + 0 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 9927 NM_001161662 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 15554 chr2 54522788 54522932 + 0 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) -6362 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 332 chr1 21974846 21974950 + 0 NA Intergenic Intergenic -1996 NM_007352 23436 Hs.728752 NM_007352 ENSG00000219073 CELA3B CBPP|ELA3B chymotrypsin like elastase family member 3B protein-coding 29299 chr9 77150965 77151069 + 0 NA Intergenic Intergenic -26428 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 19246 chr3 22779984 22779996 + 0 NA Intergenic L1M4a2|LINE|L1 422588 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 23965 chr6 7313182 7313307 + 0 NA promoter-TSS (NM_003144) promoter-TSS (NM_003144) 70 NM_001292008 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 17393 chr2 240580291 240580334 + 0 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 6004 NR_103792 101752400 Hs.585987 NR_103792 ENSG00000260942 CAPN10-AS1 locus959 CAPN10 antisense RNA 1 (head to head) ncRNA 1965 chr1 164473652 164473795 + 0 NA Intergenic Intergenic -85637 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 19212 chr3 15860060 15860083 + 0 NA promoter-TSS (NM_015199) promoter-TSS (NM_015199) -525 NM_015199 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 17207 chr2 226652516 226652573 + 0 NA Intergenic Charlie13a|DNA|hAT-Charlie 6249 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 11330 chr16 50457612 50457716 + 0 NA Intergenic MLT1J2|LTR|ERVL-MaLR -88730 NM_001173984 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 11809 chr16 87316943 87317086 + 0 NA promoter-TSS (NR_135180) promoter-TSS (NR_135180) 406 NM_001256917 100506581 Hs.729380 NM_001195124 ENSG00000260456 C16orf95 - chromosome 16 open reading frame 95 protein-coding 20612 chr3 169454901 169455084 + 0 NA intron (NR_134932, intron 1 of 4) intron (NR_134932, intron 1 of 4) 7125 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 29410 chr9 84954194 84954344 + 0 NA intron (NM_001018064, intron 14 of 16) intron (NM_001018064, intron 14 of 16) 283892 NM_001018064 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 5673 chr11 74755105 74755118 + 0 NA intron (NM_001098638, intron 1 of 5) intron (NM_001098638, intron 1 of 5) 6243 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 3650 chr10 47407009 47407157 + 0 NA promoter-TSS (NR_134500) promoter-TSS (NR_134500) -82 NR_134500 107001062 Hs.576719 NR_134500 LOC107001062 - uncharacterized LOC107001062 ncRNA 2082 chr1 174022288 174022425 + 0 NA Intergenic CpG -29284 NM_001300850 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 15798 chr2 72862649 72862830 + 0 NA Intergenic CpG -24644 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) protein-coding 11619 chr16 74291932 74292036 + 0 NA Intergenic MLT1H2|LTR|ERVL-MaLR -4791 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 12475 chr17 40956831 40956935 + 0 NA Intergenic Intergenic 10009 NM_213656 390792 Hs.28467 NM_213656 ENSG00000196859 KRT39 CK-39|K39|KA35 keratin 39 protein-coding 30193 chr9 128684966 128685070 + 0 NA promoter-TSS (NM_001248000) promoter-TSS (NM_001248000) -68 NM_001248000 6418 Hs.436687 NM_003011 ENSG00000119335 SET 2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA SET nuclear proto-oncogene protein-coding 29376 chr9 83034766 83034870 + 0 NA intron (NM_152573, intron 1 of 16) MIRb|SINE|MIR 28310 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 27126 chr7 141158740 141158844 + 0 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 84560 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 3789 chr10 66747672 66747776 + 0 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -178310 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 30698 chrX 48918990 48919159 + 0 NA promoter-TSS (NM_006875) promoter-TSS (NM_006875) 62 NM_006875 11040 Hs.727148 NM_006875 ENSG00000102096 PIM2 - Pim-2 proto-oncogene, serine/threonine kinase protein-coding 17036 chr2 211836566 211836670 + 0 NA intron (NM_001042599, intron 3 of 26) MER68B|LTR|ERVL 589742 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 2713 chr1 218585633 218585737 + 0 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 143059 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 5461 chr11 65122150 65122299 + 0 NA promoter-TSS (NM_004927) promoter-TSS (NM_004927) -20 NM_004927 740 Hs.744882 NM_004927 ENSG00000149792 MRPL49 C11orf4|L49mt|MRP-L49|NOF|NOF1 mitochondrial ribosomal protein L49 protein-coding 10755 chr15 94239602 94239706 + 0 NA Intergenic Intergenic -58547 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 22510 chr5 52922485 52922636 + 0 NA intron (NM_181501, intron 17 of 28) intron (NM_181501, intron 17 of 28) -66766 NM_002203 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 20241 chr3 138390429 138390533 + 0 NA intron (NM_012219, intron 2 of 5) intron (NM_012219, intron 2 of 5) 41353 NM_001252090 22808 Hs.527021 NM_012219 ENSG00000158186 MRAS M-RAs|R-RAS3|RRAS3 muscle RAS oncogene homolog protein-coding 12940 chr17 72391346 72391450 + 0 NA Intergenic MIR|SINE|MIR 48587 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 24411 chr6 33299413 33299517 + 0 NA promoter-TSS (NM_004761) promoter-TSS (NM_004761) -77 NM_001243738 5863 Hs.509622 NM_004761 ENSG00000237441 RGL2 HKE1.5|KE1.5|RAB2L ral guanine nucleotide dissociation stimulator like 2 protein-coding 6034 chr11 108664932 108665036 + 0 NA promoter-TSS (NM_004398) promoter-TSS (NM_004398) -41 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 HRH-J8 DEAD-box helicase 10 protein-coding 10289 chr15 65049428 65049532 + 0 NA intron (NM_178859, intron 1 of 3) intron (NM_178859, intron 1 of 3) 4110 NM_178859 123264 Hs.27018 NM_178859 ENSG00000186198 SLC51B OSTB|OSTBETA solute carrier family 51 beta subunit protein-coding 22123 chr4 187128331 187128435 + 0 NA Intergenic Intergenic 377230 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 18071 chr20 44683661 44683741 + 0 NA Intergenic Intergenic -11962 NR_034104 79015 Hs.671450 NM_024049 ENSG00000283440 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 4265 chr10 102714371 102714520 + 0 NA promoter-TSS (NM_178858) promoter-TSS (NM_178858) -12 NM_004311 403 Hs.182215 NM_004311 ENSG00000138175 ARL3 ARFL3 ADP ribosylation factor like GTPase 3 protein-coding 21696 chr4 110090458 110090562 + 0 NA intron (NM_024090, intron 2 of 3) intron (NM_024090, intron 2 of 3) 108105 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 18585 chr21 44873605 44873715 + 0 NA non-coding (NR_104597, exon 1 of 5) non-coding (NR_104597, exon 1 of 5) 243 NM_004339 754 Hs.474010 NM_004339 ENSG00000183255 PTTG1IP C21orf1|C21orf3|PBF pituitary tumor-transforming 1 interacting protein protein-coding 7569 chr12 104958662 104958858 + 0 NA Intergenic Intergenic -27560 NM_152318 121053 Hs.295563 NM_152318 ENSG00000151131 C12orf45 - chromosome 12 open reading frame 45 protein-coding 28021 chr8 73294493 73294524 + 0 NA promoter-TSS (NM_000971) promoter-TSS (NM_000971) -94 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 20560 chr3 161221192 161221296 + 0 NA promoter-TSS (NM_015938) promoter-TSS (NM_015938) -46 NM_015938 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 9845 chr15 33860803 33860905 + 0 NA intron (NM_001036, intron 101 of 103) intron (NM_001036, intron 101 of 103) -107460 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 25004 chr6 109893049 109893153 + 0 NA Intergenic HERV3-int|LTR|ERV1 -85155 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 10903 chr16 2867933 2868032 + 0 NA Intergenic Intergenic -9812 NM_022119 64063 Hs.459709 NM_022119 ENSG00000005001 PRSS22 BSSP-4|SP001LA|hBSSP-4 protease, serine 22 protein-coding 30344 chr9 135907730 135907832 + 0 NA promoter-TSS (NM_015447) promoter-TSS (NM_015447) -622 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 20342 chr3 146503633 146503737 + 0 NA Intergenic LTR101_Mam|LTR|ERVL -7694 NM_001199979 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 22000 chr4 169270931 169271090 + 0 NA promoter-TSS (NM_020870) promoter-TSS (NM_020870) 88 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 10022 chr15 45378181 45378321 + 0 NA intron (NM_001321015, intron 4 of 11) CpG 531 NM_001482 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 20958 chr3 190586616 190586720 + 0 NA intron (NM_001167931, intron 3 of 11) intron (NM_001167931, intron 3 of 11) 72617 NM_001167931 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 17024 chr2 209640503 209640607 + 0 NA intron (NM_001039538, intron 4 of 14) intron (NM_001039538, intron 4 of 14) 60876 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 8615 chr13 110615391 110615540 + 0 NA promoter-TSS (NM_001242882) promoter-TSS (NM_001242882) 5 NR_040103 55739 Hs.408324 NM_018210 ENSG00000213995 NAXD CARKD|LP3298 NAD(P)HX dehydratase protein-coding 17793 chr20 23937466 23937570 + 0 NA Intergenic Intergenic 49357 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 5703 chr11 77589847 77589951 + 0 NA 5' UTR (NM_173039, exon 1 of 3) 5' UTR (NM_173039, exon 1 of 3) 264 NM_173039 282679 Hs.503345 NM_173039 ENSG00000178301 AQP11 AQPX1 aquaporin 11 protein-coding 2740 chr1 220511270 220511383 + 0 NA Intergenic Intergenic -16857 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 208 chr1 15417699 15417803 + 0 NA intron (NM_024329, intron 1 of 3) intron (NM_024329, intron 1 of 3) 7856 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 19711 chr3 96961103 96961207 + 0 NA intron (NM_001080448, intron 2 of 17) HERV16-int|LTR|ERVL 146574 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 24553 chr6 42142639 42142766 + 0 NA 5' UTR (NM_001164446, exon 1 of 5) 5' UTR (NM_001164446, exon 1 of 5) 275 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 29963 chr9 115641005 115641109 + 0 NA Intergenic L1PB4|LINE|L1 103182 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 27351 chr8 8386414 8386518 + 0 NA Intergenic CpG -4632 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related kinase activating pseudokinase 1 protein-coding 30474 chrX 9351826 9352005 + 0 NA Intergenic Intergenic -111380 NM_001139468 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1X-linked protein-coding 25546 chr7 1883379 1883462 + 0 NA intron (NM_001013836, intron 18 of 18) intron (NM_001013836, intron 18 of 18) -39167 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 2773 chr1 222644188 222644326 + 0 NA promoter-TSS (NM_001300867) promoter-TSS (NM_001300867) -46 NM_001324065 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA family member 3, ER export factor protein-coding 9540 chr14 90383182 90383327 + 0 NA Intergenic CpG -13729 NM_006888 801 Hs.282410 NM_006888 ENSG00000198668 CALM1 CALML2|CAMI|CPVT4|DD132|LQT14|PHKD|caM calmodulin 1 protein-coding 12876 chr17 66468648 66468752 + 0 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -51846 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 13867 chr19 1592403 1592532 + 0 NA intron (NM_001281454, intron 1 of 6) CpG 294 NM_001281454 53615 Hs.178728 NM_003926 ENSG00000071655 MBD3 - methyl-CpG binding domain protein 3 protein-coding 18936 chr22 40652127 40652237 + 0 NA Intergenic Intergenic -15463 NM_001282661 57591 Hs.654688 NM_020831 ENSG00000196588 MKL1 BSAC|MAL|MRTF-A megakaryoblastic leukemia (translocation) 1 protein-coding 291 chr1 19903732 19903836 + 0 NA intron (NM_015207, intron 4 of 7) intron (NM_015207, intron 4 of 7) 19833 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 8901 chr14 37122481 37122585 + 0 NA intron (NM_030631, intron 1 of 9) intron (NM_030631, intron 1 of 9) -49493 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 3703 chr10 56538034 56538138 + 0 NA Intergenic LTR16|LTR|ERVL -176813 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 23449 chr5 147310414 147310554 + 0 NA intron (NM_001287740, intron 4 of 13) intron (NM_001287740, intron 4 of 13) 75468 NM_145001 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 114 chr1 8212101 8212205 + 0 NA intron (NR_125998, intron 2 of 3) intron (NR_125998, intron 2 of 3) 3481 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 4879 chr11 14015767 14015871 + 0 NA intron (NM_006108, intron 2 of 15) intron (NM_006108, intron 2 of 15) 53182 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 11686 chr16 78212043 78212173 + 0 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 112695 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 28187 chr8 92800280 92800384 + 0 NA Intergenic L1M5|LINE|L1 -14272 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 21616 chr4 99655498 99655602 + 0 NA Intergenic Intergenic 91472 NM_001300785 4547 Hs.195799 NM_000253 ENSG00000138823 MTTP ABL|MTP microsomal triglyceride transfer protein protein-coding 18382 chr20 62350081 62350235 + 0 NA intron (NM_005560, intron 6 of 79) intron (NM_005560, intron 6 of 79) -2852 NR_109922 101928158 Hs.473256 NR_109922 ENSG00000228812 LAMA5-AS1 - LAMA5 antisense RNA 1 ncRNA 4894 chr11 14520373 14520553 + 0 NA promoter-TSS (NM_002786) promoter-TSS (NM_002786) -18 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 25828 chr7 21996752 21996914 + 0 NA Intergenic L1MB4|LINE|L1 -50909 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 73 chr1 6157866 6157970 + 0 NA intron (NM_015557, intron 3 of 41) intron (NM_015557, intron 3 of 41) 22216 NM_015557 26038 Hs.522898 NM_015557 ENSG00000116254 CHD5 CHD-5 chromodomain helicase DNA binding protein 5 protein-coding 10313 chr15 66505159 66505251 + 0 NA promoter-TSS (NM_000968) promoter-TSS (NM_000968) 122 NM_001287822 55055 Hs.21331 NM_017975 ENSG00000174442 ZWILCH KNTC1AP|hZwilch zwilch kinetochore protein protein-coding 11371 chr16 54193714 54193818 + 0 NA Intergenic Intergenic 77113 NR_126340 100996338 Hs.232014 NR_126340 LOC100996338 - uncharacterized LOC100996338 ncRNA 27554 chr8 24349290 24349412 + 0 NA intron (NR_130710, intron 18 of 22) intron (NR_130710, intron 18 of 22) -34934 NM_001145272 27299 Hs.521459 NM_014479 ENSG00000134028 ADAMDEC1 M12.219 ADAM like decysin 1 protein-coding 7886 chr12 130340110 130340255 + 0 NA intron (NM_004764, intron 1 of 20) intron (NM_004764, intron 1 of 20) 2294 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 23586 chr5 154938172 154938298 + 0 NA promoter-TSS (NM_001252156) promoter-TSS (NM_001252156) -19 NM_015465 25929 Hs.483921 NM_015465 ENSG00000082516 GEMIN5 GEMIN-5 gem nuclear organelle associated protein 5 protein-coding 15758 chr2 70141272 70141389 + 0 NA Intergenic MIRb|SINE|MIR -16014 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 16243 chr2 121531185 121531216 + 0 NA TTS (NR_023343) TTS (NR_023343) 320 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 5479 chr11 65487755 65487859 + 0 NA Intergenic Intergenic -9931 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 9634 chr14 96904272 96904376 + 0 NA Intergenic Intergenic -39255 NR_104113 145249 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 14416 chr19 38387575 38387725 + 0 NA intron (NM_152657, intron 2 of 3) CpG 378 NM_152657 199720 Hs.447948 NM_152657 ENSG00000179168 GGN - gametogenetin protein-coding 30791 chrX 68433406 68433510 + 0 NA promoter-TSS (NM_002547) promoter-TSS (NM_002547) -1 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 29573 chr9 93453635 93453743 + 0 NA promoter-TSS (NM_198841) promoter-TSS (NM_198841) -97 NR_136229 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 18679 chr22 22342989 22343145 + 0 NA Intergenic Intergenic 44969 NR_027293 96610 Hs.449601 NM_080926 ENSG00000236850 BMS1P20 IGL|IGLV|IGLV1 BMS1, ribosome biogenesis factor pseudogene 20 pseudo 25029 chr6 112299067 112299088 + 0 NA intron (NR_121193, intron 2 of 2) (GGTGGAA)n|Simple_repeat|Simple_repeat -44362 NM_001105209 3910 Hs.654572 NM_002290 ENSG00000112769 LAMA4 CMD1JJ|LAMA3|LAMA4*-1 laminin subunit alpha 4 protein-coding 25643 chr7 6991161 6991314 + 0 NA Intergenic HERVS71-int|LTR|ERV1 75808 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 2391 chr1 202010482 202010613 + 0 NA promoter-TSS (NM_004433) promoter-TSS (NM_004433) -15 NM_004433 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 15927 chr2 86441288 86441414 + 0 NA promoter-TSS (NM_001146688) promoter-TSS (NM_001146688) -110 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 4559 chr10 124418844 124419024 + 0 NA promoter-TSS (NM_001171814) promoter-TSS (NM_001171814) 42 NM_001322968 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 17049 chr2 212940934 212941038 + 0 NA Intergenic Intergenic -14650 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 11751 chr16 83661760 83661834 + 0 NA intron (NM_001257, intron 8 of 13) intron (NM_001257, intron 8 of 13) 142179 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 1864 chr1 156767265 156767368 + 0 NA promoter-TSS (NM_005973) promoter-TSS (NM_005973) -166 NM_005973 5546 Hs.516948 NM_005973 ENSG00000143294 PRCC RCCP1|TPRC papillary renal cell carcinoma (translocation-associated) protein-coding 8617 chr13 110625977 110626024 + 0 NA intron (NM_018210, intron 4 of 9) intron (NM_018210, intron 4 of 9) 10416 NM_001242881 55739 Hs.408324 NM_018210 ENSG00000213995 NAXD CARKD|LP3298 NAD(P)HX dehydratase protein-coding 12669 chr17 50373106 50373210 + 0 NA promoter-TSS (NM_001166131) promoter-TSS (NM_001166131) 43 NM_016504 51264 Hs.7736 NM_016504 ENSG00000108826 MRPL27 L27mt mitochondrial ribosomal protein L27 protein-coding 29198 chr9 71911264 71911398 + 0 NA promoter-TSS (NM_016014) promoter-TSS (NM_016014) -86 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 16071 chr2 105455868 105455927 + 0 NA Intergenic Intergenic -17124 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 11448 chr16 59527276 59527380 + 0 NA Intergenic Intergenic 227863 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 3491 chr10 28677416 28677520 + 0 NA promoter-TSS (NM_012342) promoter-TSS (NM_012342) -27 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 19292 chr3 29187195 29187299 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 93692 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 20423 chr3 152269553 152269707 + 0 NA promoter-TSS (NR_027037) promoter-TSS (NR_027037) -4 NR_027037 401093 Hs.725347 NR_027037 ENSG00000229619 MBNL1-AS1 - MBNL1 antisense RNA 1 ncRNA 29427 chr9 85610247 85610351 + 0 NA intron (NM_001330701, intron 17 of 25) intron (NM_001330701, intron 17 of 25) 131730 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13890 chr19 2163864 2163993 + 0 NA promoter-TSS (NM_032482) promoter-TSS (NM_032482) -221 NM_032482 84444 Hs.713641 NM_032482 ENSG00000104885 DOT1L DOT1|KMT4 DOT1 like histone lysine methyltransferase protein-coding 7261 chr12 72017163 72017312 + 0 NA intron (NM_173353, intron 8 of 10) intron (NM_173353, intron 8 of 10) 78391 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 25803 chr7 20329676 20329823 + 0 NA non-coding (NR_110119, exon 2 of 4) non-coding (NR_110119, exon 2 of 4) -1353 NM_002214 3696 Hs.592171 NM_002214 ENSG00000105855 ITGB8 - integrin subunit beta 8 protein-coding 17042 chr2 212537929 212538033 + 0 NA intron (NM_001042599, intron 1 of 26) CpG 647 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 24 chr1 1615311 1615462 + 0 NA promoter-TSS (NM_001170686) promoter-TSS (NM_001170686) -29 NM_001170686 142678 Hs.135805 NM_080875 ENSG00000197530 MIB2 ZZANK1|ZZZ5 mindbomb E3 ubiquitin protein ligase 2 protein-coding 10218 chr15 60317155 60317259 + 0 NA Intergenic Intergenic 80779 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 2759 chr1 221829813 221829840 + 0 NA intron (NR_125989, intron 3 of 3) intron (NR_125989, intron 3 of 3) 10840 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 23515 chr5 150458928 150459051 + 0 NA Intergenic Intergenic -9233 NM_001025071 6208 Hs.744846 NM_005617 ENSG00000164587 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 7014 chr12 52033028 52033186 + 0 NA intron (NM_001202233, intron 1 of 7) CpG -4608 NM_001202234 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 8348 chr13 73428860 73428962 + 0 NA Intergenic Intergenic -135333 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 8156 chr13 40672485 40672589 + 0 NA Intergenic Intergenic -5940 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 104 chr1 7704604 7704690 + 0 NA intron (NM_015215, intron 11 of 22) CpG -66622 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 30808 chrX 70434565 70434680 + 0 NA Intergenic CpG -10233 NM_021120 1741 Hs.721586 NM_020730 ENSG00000082458 DLG3 MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR discs large MAGUK scaffold protein 3 protein-coding 28030 chr8 73746785 73746889 + 0 NA promoter-TSS (NM_001164380) promoter-TSS (NM_001164380) 90 NM_014393 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 30429 chrUn_KI270754v1 34916 35065 + 0 NA NA SST1|Satellite|centr NA NA 3493 chr10 29120342 29120446 + 0 NA Intergenic Intergenic -168667 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 20301 chr3 141937661 141937838 + 0 NA Intergenic Intergenic 61157 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 1513 chr1 111704890 111704994 + 0 NA intron (NM_001010935, intron 7 of 8) intron (NM_001010935, intron 7 of 8) 34482 NM_019099 55924 Hs.193406 NM_019099 ENSG00000197852 FAM212B C1orf183 family with sequence similarity 212 member B protein-coding 1264 chr1 88774331 88774488 + 0 NA intron (NM_001320707, intron 6 of 20) MER21C|LTR|ERVL -89205 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 23150 chr5 127030542 127030671 + 0 NA 5' UTR (NM_178450, exon 1 of 5) 5' UTR (NM_178450, exon 1 of 5) 202 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 16411 chr2 143900147 143900305 + 0 NA Intergenic MLT2D|LTR|ERVL -36841 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 23159 chr5 127959444 127959575 + 0 NA Intergenic Intergenic 123565 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 25421 chr6 158849983 158850104 + 0 NA intron (NR_028496, intron 2 of 2) intron (NR_028496, intron 2 of 2) 7589 NR_028496 202459 Hs.487035 NM_145303 ENSG00000243775 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 20775 chr3 182412284 182412388 + 0 NA Intergenic Intergenic 74026 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 47 chr1 2643189 2643346 + 0 NA intron (NM_001242672, intron 6 of 6) CpG -10225 NM_033467 79258 Hs.591453 NM_033467 ENSG00000142606 MMEL1 MMEL2|NEP2|NEPII|NL1|NL2|SEP membrane metalloendopeptidase like 1 protein-coding 12207 chr17 20698657 20698751 + 0 NA Intergenic Intergenic -13742 NR_073509 100287072 Hs.676308 NR_073509 LOC100287072 - ribosomal protein S6 kinase B1 pseudogene pseudo 16174 chr2 113283955 113284059 + 0 NA Intergenic Intergenic -5086 NM_003466 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 3619 chr10 43420911 43421015 + 0 NA Intergenic Intergenic -11715 NM_001098204 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 21692 chr4 109729890 109730037 + 0 NA 5' UTR (NM_030821, exon 1 of 4) 5' UTR (NM_030821, exon 1 of 4) 123 NM_030821 81579 Hs.389452 NM_030821 ENSG00000123739 PLA2G12A GXII|PLA2G12|ROSSY phospholipase A2 group XIIA protein-coding 6296 chr11 126113700 126113839 + 0 NA Intergenic MIRb|SINE|MIR -50477 NM_001243597 50937 Hs.38034 NM_016952 ENSG00000064309 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 11702 chr16 80197828 80198028 + 0 NA intron (NR_120307, intron 2 of 5) MLT1I|LTR|ERVL-MaLR -342806 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 14545 chr19 45178579 45178683 + 0 NA promoter-TSS (NM_001270891) promoter-TSS (NM_001270891) -114 NM_212550 388552 Hs.103902 NM_212550 ENSG00000189114 BLOC1S3 BLOS3|HPS8|RP biogenesis of lysosomal organelles complex 1 subunit 3 protein-coding 22598 chr5 60652321 60652425 + 0 NA intron (NM_018369, intron 2 of 10) MER72B|LTR|ERV1 47793 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 21884 chr4 147617325 147617429 + 0 NA promoter-TSS (NM_018241) promoter-TSS (NM_018241) -11 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 19220 chr3 16265048 16265152 + 0 NA promoter-TSS (NM_001047434) promoter-TSS (NM_001047434) -60 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 21114 chr4 1907999 1908113 + 0 NA intron (NM_001042424, intron 3 of 21) intron (NM_001042424, intron 3 of 21) 7430 NM_133334 7468 Hs.113876 NM_007331 ENSG00000109685 NSD2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 nuclear receptor binding SET domain protein 2 protein-coding 17167 chr2 223563637 223563685 + 0 NA Intergenic Intergenic 38838 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 10637 chr15 87477876 87477980 + 0 NA Intergenic Intergenic -99001 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 5897 chr11 95119794 95119858 + 0 NA intron (NM_015036, intron 1 of 1) L1MA2|LINE|L1 30016 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 27253 chr7 154913848 154914006 + 0 NA Intergenic Intergenic -14590 NR_024477 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 4711 chr11 3855068 3855111 + 0 NA promoter-TSS (NM_003156) promoter-TSS (NM_003156) -614 NM_001277962 6786 Hs.501735 NM_003156 ENSG00000167323 STIM1 D11S4896E|GOK|IMD10|STRMK|TAM|TAM1 stromal interaction molecule 1 protein-coding 14362 chr19 34926899 34927003 + 0 NA promoter-TSS (NR_110749) promoter-TSS (NR_110749) 48 NM_194325 90075 Hs.657402 NM_194325 ENSG00000168661 ZNF30 KOX28 zinc finger protein 30 protein-coding 25462 chr6 164322669 164322768 + 0 NA Intergenic Intergenic 499345 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 24263 chr6 27838354 27838442 + 0 NA promoter-TSS (NM_003510) promoter-TSS (NM_003510) -59 NM_003510 8330 Hs.734717 NM_003510 ENSG00000275221 HIST1H2AK H2A/d|H2AFD histone cluster 1 H2A family member k protein-coding 13314 chr18 23053916 23053939 + 0 NA Intergenic LTR50|LTR|ERVL -80637 NM_001256438 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 6353 chr11 130003578 130003706 + 0 NA promoter-TSS (NM_020228) promoter-TSS (NM_020228) -807 NM_020228 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7 PR/SET domain 10 protein-coding 21547 chr4 86831433 86831465 + 0 NA intron (NM_197965, intron 3 of 5) intron (NM_197965, intron 3 of 5) 17814 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 1912 chr1 160343257 160343411 + 0 NA promoter-TSS (NM_001290186) promoter-TSS (NM_001290186) 61 NM_001290184 23385 Hs.517249 NM_015331 ENSG00000162736 NCSTN ATAG1874 nicastrin protein-coding 2164 chr1 181088627 181088657 + 0 NA 5' UTR (NM_016545, exon 1 of 1) 5' UTR (NM_016545, exon 1 of 1) 140 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 786 chr1 44730761 44730877 + 0 NA TTS (NR_002755) TTS (NR_002755) 349 NR_002755 26830 NR_002755 ENSG00000200169 RNU5D-1 RNU5D|U5DL|U5DS RNA, U5D small nuclear 1 snRNA 3293 chr10 12333750 12333854 + 0 NA Intergenic Intergenic -15741 NM_020397 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 27803 chr8 50056441 50056621 + 0 NA intron (NM_001321773, intron 1 of 17) MIR|SINE|MIR -107600 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 22155 chr5 1884238 1884342 + 0 NA intron (NM_001278632, intron 1 of 5) CpG-21916 -1524 NM_016358 50805 Hs.196927 NM_016358 ENSG00000113430 IRX4 IRXA3 iroquois homeobox 4 protein-coding 4148 chr10 97037433 97037537 + 0 NA intron (NM_003061, intron 22 of 36) intron (NM_003061, intron 22 of 36) -65271 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 6742 chr12 25054223 25054352 + 0 NA intron (NM_001204126, intron 1 of 19) intron (NM_001204126, intron 1 of 19) 2040 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 201 chr1 15090500 15090597 + 0 NA intron (NM_201628, intron 8 of 14) intron (NM_201628, intron 8 of 14) 61916 NR_027136 200197 Hs.531424 NM_182534 ENSG00000175147 TMEM51-AS1 C1orf126 TMEM51 antisense RNA 1 ncRNA 24828 chr6 79869709 79869813 + 0 NA Intergenic Intergenic -57515 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 24076 chr6 13725726 13725825 + 0 NA Intergenic Intergenic -14211 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 22632 chr5 65539942 65540046 + 0 NA intron (NM_022145, intron 6 of 10) intron (NM_022145, intron 6 of 10) 23174 NM_022145 64105 Hs.529778 NM_022145 ENSG00000123219 CENPK AF5alpha|CENP-K|FKSG14|P33|Solt centromere protein K protein-coding 17771 chr20 23049821 23049863 + 0 NA promoter-TSS (NM_000361) promoter-TSS (NM_000361) -178 NM_000361 7056 Hs.2030 NM_000361 ENSG00000178726 THBD AHUS6|BDCA3|CD141|THPH12|THRM|TM thrombomodulin protein-coding 11474 chr16 66479246 66479350 + 0 NA intron (NM_001197225, intron 3 of 4) intron (NM_001197225, intron 3 of 4) -2896 NR_109960 101927726 Hs.739193 NR_109960 ENSG00000261656 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 719 chr1 41418969 41419073 + 0 NA Intergenic MIR3|SINE|MIR -43352 NR_135817 101929901 NR_135817 ENSG00000229901 LOC101929901 - uncharacterized LOC101929901 ncRNA 16644 chr2 171160825 171160929 + 0 NA promoter-TSS (NM_012290) promoter-TSS (NM_012290) 23 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 4645 chr10 133259412 133259516 + 0 NA Intergenic Intergenic -11579 NR_108079 101927671 Hs.741766 NR_108078 ENSG00000166917 MIR202HG - MIR202 host gene ncRNA 20500 chr3 157248696 157248800 + 0 NA Intergenic L4_A_Mam|LINE|RTE-X -87988 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 1529 chr1 112716353 112716496 + 0 NA Intergenic Intergenic -1096 NM_005167 333926 Hs.655231 NM_005167 ENSG00000155367 PPM1J PP2CZ|PP2Czeta|PPP2CZ protein phosphatase, Mg2+/Mn2+ dependent 1J protein-coding 20143 chr3 130112029 130112174 + 0 NA promoter-TSS (NR_024252) promoter-TSS (NR_024252) -668 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 9273 chr14 68676714 68676741 + 0 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -47940 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 10796 chr15 99442647 99442751 + 0 NA Intergenic Intergenic -123229 NM_001130927 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 11874 chr17 782236 782340 + 0 NA promoter-TSS (NM_016080) promoter-TSS (NM_016080) -41 NM_001317947 55178 Hs.182729 NM_018146 ENSG00000171861 MRM3 RMTL1|RNMTL1 mitochondrial rRNA methyltransferase 3 protein-coding 29532 chr9 91495584 91495688 + 0 NA Intergenic Intergenic -71010 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 14848 chr19 57499758 57499862 + 0 NA promoter-TSS (NM_001304334) promoter-TSS (NM_001304334) -44 NM_001304336 374928 Hs.579576 NM_198542 ENSG00000152439 ZNF773 ZNF419B zinc finger protein 773 protein-coding 22957 chr5 102865856 102865960 + 0 NA promoter-TSS (NM_138766) promoter-TSS (NM_138766) 85 NM_001177306 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 6773 chr12 26938359 26938503 + 0 NA promoter-TSS (NM_001171888) promoter-TSS (NM_001171888) 59 NM_001171887 26127 Hs.591162 NM_015633 ENSG00000111790 FGFR1OP2 HSPC123-like|WIT3.0 FGFR1 oncogene partner 2 protein-coding 6671 chr12 14836396 14836500 + 0 NA intron (NM_021071, intron 2 of 2) Tigger7|DNA|TcMar-Tigger 7031 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 20270 chr3 139677911 139678047 + 0 NA promoter-TSS (NM_178177) promoter-TSS (NM_178177) 71 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 29278 chr9 76137188 76137282 + 0 NA intron (NM_001190482, intron 10 of 36) intron (NM_001190482, intron 10 of 36) 246591 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 27656 chr8 32309981 32310134 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -130689 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 13984 chr19 5720188 5720292 + 0 NA promoter-TSS (NM_001276479) promoter-TSS (NM_001276479) 18 NM_004793 9361 Hs.350265 NM_004793 ENSG00000196365 LONP1 CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON lon peptidase 1, mitochondrial protein-coding 26537 chr7 87152447 87152582 + 0 NA promoter-TSS (NR_136253) promoter-TSS (NR_136253) -21 NR_136253 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 18625 chr22 19120953 19121056 + 0 NA intron (NM_005137, intron 1 of 9) intron (NM_005137, intron 1 of 9) 1450 NR_033674 9993 Hs.517357 NM_005137 ENSG00000070413 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 17324 chr2 235709261 235709397 + 0 NA intron (NM_001037131, intron 2 of 17) intron (NM_001037131, intron 2 of 17) 203578 NR_131900 100506749 Hs.684184 NR_131900 ENSG00000235529 AGAP1-IT1 - AGAP1 intronic transcript 1 ncRNA 27477 chr8 19141433 19141557 + 0 NA Intergenic MamRTE1|LINE|RTE-BovB 104027 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 4306 chr10 104353654 104353749 + 0 NA promoter-TSS (NR_108036) promoter-TSS (NR_108036) -63 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 1341 chr1 94622835 94623017 + 0 NA Intergenic Intergenic -81069 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 10810 chr15 100713633 100713746 + 0 NA Intergenic Intergenic 111139 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 18144 chr20 48052021 48052125 + 0 NA Intergenic Intergenic -61956 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 17723 chr20 19815675 19815803 + 0 NA Intergenic Intergenic -70782 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 2684 chr1 215543380 215543478 + 0 NA Intergenic L1MCc|LINE|L1 -23950 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 12082 chr17 8376740 8376844 + 0 NA promoter-TSS (NM_001304947) promoter-TSS (NM_001304947) -81 NM_001304947 124751 Hs.304604 NM_213597 ENSG00000184619 KRBA2 - KRAB-A domain containing 2 protein-coding 27767 chr8 47353344 47353475 + 0 NA intron (NR_104581, intron 5 of 16) intron (NR_104581, intron 5 of 16) 92531 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 4799 chr11 9573562 9573705 + 0 NA promoter-TSS (NM_003390) promoter-TSS (NM_003390) -48 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 8653 chr13 114065368 114065530 + 0 NA intron (NM_001320821, intron 2 of 25) intron (NM_001320821, intron 2 of 25) 12530 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 27591 chr8 27274529 27274633 + 0 NA Intergenic Intergenic -16142 NM_001283055 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 15724 chr2 68808077 68808095 + 0 NA intron (NM_014882, intron 4 of 9) intron (NM_014882, intron 4 of 9) 33285 NM_001166276 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 6414 chr11 134339969 134340071 + 0 NA intron (NM_138342, intron 1 of 19) intron (NM_138342, intron 1 of 19) 8146 NM_138342 89944 Hs.436178 NM_138342 ENSG00000149328 GLB1L2 MST114|MSTP114 galactosidase beta 1 like 2 protein-coding 3979 chr10 80079184 80079231 + 0 NA promoter-TSS (NM_001270374) promoter-TSS (NM_001270374) -14 NR_027430 219347 Hs.524453 NR_027428 TMEM254-AS1 - TMEM254 antisense RNA 1 ncRNA 24136 chr6 18260793 18260897 + 0 NA intron (NM_003472, intron 2 of 10) AluJb|SINE|Alu 3723 NM_003472 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 28877 chr9 2016662 2016766 + 0 NA intron (NM_003070, intron 1 of 33) CpG 1495 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 27375 chr8 10090014 10090118 + 0 NA intron (NM_012331, intron 1 of 5) intron (NM_012331, intron 1 of 5) -5486 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 12735 chr17 56808610 56808673 + 0 NA intron (NM_001085430, intron 6 of 7) intron (NM_001085430, intron 6 of 7) 25254 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 18959 chr22 41590014 41590156 + 0 NA promoter-TSS (NM_002676) promoter-TSS (NM_002676) -218 NM_002676 5372 Hs.75835 NM_002676 ENSG00000100417 PMM1 Sec53 phosphomannomutase 1 protein-coding 20544 chr3 159881851 159881989 + 0 NA intron (NM_001197108, intron 2 of 6) MLT1H|LTR|ERVL-MaLR 42059 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 21966 chr4 162838825 162838929 + 0 NA Intergenic LTR40b|LTR|ERVL 254751 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 17470 chr20 2652398 2652502 + 0 NA promoter-TSS (NM_006392) promoter-TSS (NM_006392) -82 NM_006392 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 9008 chr14 52552554 52552718 + 0 NA promoter-TSS (NM_001160047) promoter-TSS (NM_001160047) -53 NM_001160047 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 9652 chr14 99378836 99378937 + 0 NA Intergenic Intergenic 102003 NM_032233 84193 Hs.510407 NM_032233 ENSG00000183576 SETD3 C14orf154 SET domain containing 3 protein-coding 10434 chr15 74193455 74193575 + 0 NA TTS (NM_001142620) TTS (NM_001142620) 9364 NM_022369 64220 Hs.24553 NM_022369 ENSG00000137868 STRA6 MCOPCB8|MCOPS9|PP14296 stimulated by retinoic acid 6 protein-coding 16521 chr2 158894218 158894322 + 0 NA Intergenic MIR3|SINE|MIR -74364 NM_001145909 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 27609 chr8 27872859 27872963 + 0 NA intron (NM_173833, intron 8 of 8) intron (NM_173833, intron 8 of 8) 13205 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 26681 chr7 99466107 99466266 + 0 NA promoter-TSS (NM_001003713) promoter-TSS (NM_001003713) 15 NM_001039178 9551 Hs.521056 NM_004889 ENSG00000241468 ATP5J2 ATP5JL ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 protein-coding 15742 chr2 69519018 69519122 + 0 NA TTS (NR_003705) TTS (NR_003705) 1101 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 10051 chr15 48811110 48811243 + 0 NA promoter-TSS (NM_001194998) promoter-TSS (NM_001194998) -30 NM_001194998 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 29550 chr9 92506452 92506556 + 0 NA intron (NM_001393, intron 6 of 9) intron (NM_001393, intron 6 of 9) 21554 NR_039817 100616351 NR_039817 ENSG00000264158 MIR4670 - microRNA 4670 ncRNA 23380 chr5 141848858 141848988 + 0 NA Intergenic L2c|LINE|L2 17279 NM_001278615 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 23339 chr5 140157188 140157350 + 0 NA promoter-TSS (NR_130738) promoter-TSS (NR_130738) -50 NR_130738 101929719 Hs.150064 NR_130738 ENSG00000254363 LOC101929719 - uncharacterized LOC101929719 ncRNA 22287 chr5 17154724 17154828 + 0 NA intron (NR_027253, intron 2 of 2) intron (NR_027253, intron 2 of 2) -62047 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 19980 chr3 119206713 119206818 + 0 NA Intergenic Intergenic -19721 NR_046574 100874201 Hs.721307 NR_046574 ENSG00000240254 B4GALT4-AS1 - B4GALT4 antisense RNA 1 ncRNA 18791 chr22 30667872 30667981 + 0 NA promoter-TSS (NM_001304795) promoter-TSS (NM_001304795) -36 NM_001304796 150290 Hs.517544 NM_152511 ENSG00000167065 DUSP18 DSP18|DUSP20|LMWDSP20 dual specificity phosphatase 18 protein-coding 7976 chr13 24148892 24149033 + 0 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -11754 NM_001166271 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 26122 chr7 41573166 41573294 + 0 NA Intergenic Intergenic -120686 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 3942 chr10 77405830 77405934 + 0 NA intron (NM_001322832, intron 1 of 27) intron (NM_001322832, intron 1 of 27) 55010 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 12044 chr17 7484262 7484384 + 0 NA promoter-TSS (NM_020899) promoter-TSS (NM_020899) -56 NM_000937 5430 Hs.270017 NM_000937 ENSG00000181222 POLR2A POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1 RNA polymerase II subunit A protein-coding 15708 chr2 67397212 67397326 + 0 NA promoter-TSS (NM_019002) promoter-TSS (NM_019002) -41 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 Ewing tumor associated antigen 1 protein-coding 21184 chr4 11748368 11748472 + 0 NA Intergenic Intergenic -319507 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 17584 chr20 10573464 10573568 + 0 NA intron (NM_001009608, intron 4 of 7) intron (NM_001009608, intron 4 of 7) 76179 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 8631 chr13 112587455 112587626 + 0 NA intron (NM_001286279, intron 1 of 9) CpG 645 NM_006322 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 8075 chr13 31982617 31982721 + 0 NA Intergenic MER33|DNA|hAT-Charlie -48631 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 5394 chr11 62880794 62880921 + 0 NA promoter-TSS (NR_037193) promoter-TSS (NR_037193) -15 NM_001013251 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 21095 chr4 337603 337707 + 0 NA promoter-TSS (NM_003441) promoter-TSS (NM_003441) -152 NM_003441 7700 Hs.654355 NM_003441 ENSG00000131127 ZNF141 D4S90|PAPA6|pHZ-44 zinc finger protein 141 protein-coding 7545 chr12 103401528 103401632 + 0 NA intron (NM_001099336, intron 3 of 5) intron (NM_001099336, intron 3 of 5) 94430 NR_103526 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 19392 chr3 40457227 40457384 + 0 NA promoter-TSS (NM_003973) promoter-TSS (NM_003973) 13 NM_003973 9045 Hs.446522 NM_003973 ENSG00000188846 RPL14 CAG-ISL-7|CTG-B33|L14|RL14|hRL14 ribosomal protein L14 protein-coding 6448 chr12 2284921 2285048 + 0 NA intron (NR_046769, intron 1 of 2) intron (NR_046769, intron 1 of 2) 15208 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 6409 chr11 134223997 134224125 + 0 NA promoter-TSS (NM_052875) promoter-TSS (NM_052875) 471 NM_015261 23310 Hs.438550 NM_015261 ENSG00000151503 NCAPD3 CAP-D3|CAPD3|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex subunit D3 protein-coding 2268 chr1 192531279 192531383 + 0 NA Intergenic L2a|LINE|L2 -44396 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 9931 chr15 40593853 40594007 + 0 NA promoter-TSS (NM_170589) promoter-TSS (NM_170589) -319 NM_170589 57082 Hs.181855 NM_144508 ENSG00000137812 KNL1 AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105 kinetochore scaffold 1 protein-coding 30278 chr9 131608550 131608684 + 0 NA intron (NM_005312, intron 11 of 23) intron (NM_005312, intron 11 of 23) -77342 NM_001135954 83549 Hs.9597 NM_031432 ENSG00000130717 UCK1 URK1 uridine-cytidine kinase 1 protein-coding 22977 chr5 107217767 107217871 + 0 NA Intergenic Intergenic -206805 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 20185 chr3 133943933 133943981 + 0 NA intron (NM_005630, intron 10 of 13) intron (NM_005630, intron 10 of 13) -14145 NM_025041 80111 Hs.287691 NM_025041 ENSG00000221972 C3orf36 - chromosome 3 open reading frame 36 protein-coding 17019 chr2 209423877 209424007 + 0 NA promoter-TSS (NM_001039538) promoter-TSS (NM_001039538) -105 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 16942 chr2 203014569 203014723 + 0 NA promoter-TSS (NM_001114132) promoter-TSS (NM_001114132) -233 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 12682 chr17 50707204 50707355 + 0 NA intron (NM_052855, intron 1 of 4) CpG 630 NM_052855 91369 Hs.463426 NM_052855 ENSG00000154945 ANKRD40 - ankyrin repeat domain 40 protein-coding 23522 chr5 150642724 150642828 + 0 NA intron (NM_007286, intron 1 of 2) intron (NM_007286, intron 1 of 2) 2131 NM_001109974 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 6379 chr11 131512042 131512077 + 0 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) 28808 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 15186 chr2 25078651 25078822 + 0 NA intron (NM_001319099, intron 1 of 22) intron (NM_001319099, intron 1 of 22) 36273 NM_001319099 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 7244 chr12 68132089 68132241 + 0 NA Intergenic L1MA2|LINE|L1 27576 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 12058 chr17 7887668 7887812 + 0 NA intron (NM_001005271, intron 1 of 39) (CTCCGCC)n|Simple_repeat|Simple_repeat -1111 NM_005852 1107 Hs.25601 NM_005852 ENSG00000170004 CHD3 Mi-2a|Mi2-ALPHA|ZFH chromodomain helicase DNA binding protein 3 protein-coding 13648 chr18 58785463 58785661 + 0 NA Intergenic Intergenic -77038 NM_001318726 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 11257 chr16 31073379 31073412 + 0 NA 5' UTR (NM_001172668, exon 1 of 3) 5' UTR (NM_001172668, exon 1 of 3) 107 NM_001172668 79759 Hs.102928 NM_024706 ENSG00000167394 ZNF668 - zinc finger protein 668 protein-coding 28803 chr8 143219589 143219762 + 0 NA Intergenic Intergenic 6482 NM_001301772 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 9135 chr14 60775487 60775523 + 0 NA intron (NM_001177963, intron 1 of 6) L2a|LINE|L2 40764 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1, CDK activating kinase assembly factor protein-coding 15223 chr2 27071612 27071778 + 0 NA promoter-TSS (NM_001134693) promoter-TSS (NM_001134693) 4 NM_001134693 100128731 Hs.502948 NM_001134693 ENSG00000228474 OST4 - oligosaccharyltransferase complex subunit 4, non-catalytic protein-coding 10600 chr15 84658290 84658394 + 0 NA 5' UTR (NM_205858, exon 1 of 3) 5' UTR (NM_205858, exon 1 of 3) 229 NM_021077 4828 Hs.386470 NM_021077 ENSG00000197696 NMB - neuromedin B protein-coding 22262 chr5 15003595 15003659 + 0 NA Intergenic Intergenic -131849 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 2016 chr1 167553735 167553867 + 0 NA promoter-TSS (NM_003851) promoter-TSS (NM_003851) 18 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 29848 chr9 110256667 110256821 + 0 NA promoter-TSS (NM_003329) promoter-TSS (NM_003329) -104 NM_001244938 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 17479 chr20 3221990 3222094 + 0 NA intron (NM_181493, intron 7 of 7) intron (NM_181493, intron 7 of 7) 12682 NM_181493 3704 Hs.415299 NM_033453 ENSG00000125877 ITPA C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3 inosine triphosphatase protein-coding 24601 chr6 43687708 43687812 + 0 NA promoter-TSS (NM_001193343) promoter-TSS (NM_001193343) 52 NM_001193343 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRPS18-3|S18bmt mitochondrial ribosomal protein S18A protein-coding 10490 chr15 77420271 77420393 + 0 NA promoter-TSS (NM_001304505) promoter-TSS (NM_001304505) -228 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 25598 chr7 5430003 5430053 + 0 NA Intergenic Intergenic -6482 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 31015 chrX 120245161 120245219 + 0 NA promoter-TSS (NR_027131) promoter-TSS (NR_027131) 77 NR_027131 158801 Hs.442518 NM_173522 ENSG00000233382 NKAPP1 CXorf42 NFKB activating protein pseudogene 1 pseudo 16555 chr2 161160960 161161067 + 0 NA intron (NM_001199135, intron 1 of 7) intron (NM_001199135, intron 1 of 7) 585 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 29902 chr9 113056745 113056766 + 0 NA promoter-TSS (NM_001282518) promoter-TSS (NM_001282518) 36 NM_001282515 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 26414 chr7 74133848 74133952 + 0 NA Intergenic MER41B|LTR|ERV1 -40476 NM_031992 7458 Hs.520943 NM_022170 ENSG00000106682 EIF4H WBSCR1|WSCR1|eIF-4H eukaryotic translation initiation factor 4H protein-coding 27623 chr8 28701460 28701582 + 0 NA promoter-TSS (NR_073469) promoter-TSS (NR_073469) 48 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 29841 chr9 109640305 109640467 + 0 NA promoter-TSS (NM_001037293) promoter-TSS (NM_001037293) -402 NM_001037293 114299 Hs.591908 NM_053016 ENSG00000157654 PALM2 AKAP2 paralemmin 2 protein-coding 20649 chr3 171753154 171753298 + 0 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 57268 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 - phospholipase D1 protein-coding 10239 chr15 62119424 62119597 + 0 NA Intergenic Intergenic 45773 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 15019 chr2 11753538 11753714 + 0 NA intron (NM_145693, intron 1 of 19) intron (NM_145693, intron 1 of 19) 7030 NM_145693 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 2802 chr1 223992608 223992761 + 0 NA promoter-TSS (NR_132119) promoter-TSS (NR_132119) -40 NR_132119 441124 Hs.520589 NR_132119 GTF2IP20 - general transcription factor IIi pseudogene 20 pseudo 12822 chr17 62820007 62820160 + 0 NA intron (NR_135634, intron 1 of 1) intron (NR_135634, intron 1 of 1) 11581 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 LOC101927877 - uncharacterized LOC101927877 ncRNA 15256 chr2 28378051 28378189 + 0 NA Intergenic Intergenic -14792 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 6102 chr11 113314413 113314517 + 0 NA promoter-TSS (NM_001318533) promoter-TSS (NM_001318533) -64 NM_001318533 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 27273 chr7 155919119 155919270 + 0 NA Intergenic Intergenic -42025 NR_144629 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 12222 chr17 21457152 21457281 + 0 NA Intergenic Intergenic 80829 NM_021012 3768 Hs.200629 NM_021012 ENSG00000184185 KCNJ12 IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x potassium voltage-gated channel subfamily J member 12 protein-coding 5926 chr11 96307951 96308034 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -33446 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 14082 chr19 10569010 10569174 + 0 NA promoter-TSS (NM_001800) promoter-TSS (NM_001800) -113 NM_079421 1032 Hs.435051 NM_001800 ENSG00000129355 CDKN2D INK4D|p19|p19-INK4D cyclin dependent kinase inhibitor 2D protein-coding 7365 chr12 86801563 86801667 + 0 NA intron (NM_013244, intron 1 of 6) intron (NM_013244, intron 1 of 6) 37289 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 13786 chr18 74951267 74951371 + 0 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 254194 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 3753 chr10 61943169 61943273 + 0 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) 41967 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 2823 chr1 225319074 225319242 + 0 NA intron (NM_001373, intron 59 of 83) intron (NM_001373, intron 59 of 83) 108955 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 3894 chr10 73601607 73601741 + 0 NA Intergenic Intergenic -10324 NM_001320437 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 18010 chr20 40565141 40565245 + 0 NA Intergenic Intergenic 124047 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 27276 chr7 155962439 155962543 + 0 NA promoter-TSS (NM_001291913) promoter-TSS (NM_001291913) -141 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 31039 chrX 123961536 123961640 + 0 NA promoter-TSS (NM_006603) promoter-TSS (NM_006603) -118 NM_001042750 10735 Hs.496710 NM_006603 ENSG00000101972 STAG2 SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 23012 chr5 111367242 111367351 + 0 NA intron (NM_001323376, intron 2 of 8) MSTD|LTR|ERVL-MaLR 142754 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|caMK calcium/calmodulin dependent protein kinase IV protein-coding 22838 chr5 87268357 87268370 + 0 NA promoter-TSS (NM_022650) promoter-TSS (NM_022650) 110 NM_002890 5921 Hs.664080 NM_002890 ENSG00000145715 RASA1 CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP RAS p21 protein activator 1 protein-coding 6995 chr12 50400797 50400930 + 0 NA promoter-TSS (NM_001170804) promoter-TSS (NM_001170804) 54 NM_001170808 113251 Hs.26613 NM_052879 ENSG00000161813 LARP4 PP13296 La ribonucleoprotein domain family member 4 protein-coding 22330 chr5 31409002 31409106 + 0 NA intron (NM_001100412, intron 32 of 34) intron (NM_001100412, intron 32 of 34) 123121 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 27673 chr8 35029182 35029330 + 0 NA Intergenic Intergenic -206201 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 1782 chr1 154196980 154197207 + 0 NA Intergenic L2c|LINE|L2 -3350 NR_030600 100126346 NR_030600 ENSG00000215938 MIR190B MIRN190B|mir-190b microRNA 190b ncRNA 28635 chr8 127294765 127294918 + 0 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 50204 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 2698 chr1 217562637 217562741 + 0 NA intron (NM_018040, intron 5 of 9) MIRc|SINE|MIR 68413 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30 G-patch domain containing 2 protein-coding 17339 chr2 236871471 236871575 + 0 NA Intergenic Intergenic 184644 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 19125 chr3 8741674 8741737 + 0 NA intron (NM_033337, intron 1 of 1) intron (NM_033337, intron 1 of 1) 7905 NM_001234 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 13393 chr18 31429727 31429831 + 0 NA Intergenic Intergenic -2791 NR_110788 101927718 Hs.625473 NR_110788 ENSG00000266729 DSG1-AS1 - DSG1 antisense RNA 1 ncRNA 23572 chr5 154214622 154214726 + 0 NA intron (NM_198321, intron 1 of 11) intron (NM_198321, intron 1 of 11) 23939 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 24399 chr6 32853737 32853841 + 0 NA promoter-TSS (NM_002800).7 promoter-TSS (NM_002800).7 182 NM_000593 6890 Hs.352018 NM_000593 ENSG00000168394 TAP1 ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N transporter 1, ATP binding cassette subfamily B member protein-coding 27485 chr8 19664956 19665048 + 0 NA intron (NR_024040, intron 1 of 9) L1PB4|LINE|L1 17581 NM_018371 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 6231 chr11 122140677 122140698 + 0 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) 5906 NR_029477 406882 NR_029477 ENSG00000198975 MIRLET7A2 LET7A2|MIRNLET7A2|let-7a-2 microRNA let-7a-2 ncRNA 792 chr1 44807342 44807454 + 0 NA promoter-TSS (NM_001013632) promoter-TSS (NM_001013632) -113 NM_001013632 343521 Hs.585137 NM_001013632 ENSG00000188396 TCTEX1D4 - Tctex1 domain containing 4 protein-coding 30243 chr9 129773818 129773922 + 0 NA Intergenic Intergenic -20805 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 28870 chr9 893939 894043 + 0 NA exon (NM_021951, exon 3 of 5) exon (NM_021951, exon 3 of 5) 52301 NM_021951 1761 Hs.98586 NM_021951 ENSG00000137090 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 30176 chr9 128250525 128250635 + 0 NA intron (NM_001005336, intron 20 of 22) CpG -5550 NR_036110 100422893 NR_036110 ENSG00000264823 MIR3154 mir-3154 microRNA 3154 ncRNA 1248 chr1 87473469 87473619 + 0 NA Intergenic Intergenic -101889 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 10340 chr15 67840244 67840388 + 0 NA promoter-TSS (NR_104080).5 promoter-TSS (NR_104080).5 -271 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 15364 chr2 37671186 37671290 + 0 NA intron (NM_001270436, intron 1 of 1) CpG 961 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 6368 chr11 130677565 130677669 + 0 NA intron (NM_001271983, intron 1 of 2) intron (NM_001271983, intron 1 of 2) 4661 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 4727 chr11 5204986 5205090 + 0 NA Intergenic Intergenic -4338 NM_001004760 283111 Hs.553670 NM_001004760 ENSG00000176742 OR51V1 OR11-36|OR51A12 olfactory receptor family 51 subfamily V member 1 protein-coding 12632 chr17 48908163 48908267 + 0 NA promoter-TSS (NM_023079) promoter-TSS (NM_023079) -154 NM_023079 65264 Hs.514297 NM_023079 ENSG00000159202 UBE2Z HOYS7|USE1 ubiquitin conjugating enzyme E2 Z protein-coding 17091 chr2 217162662 217162766 + 0 NA Intergenic Intergenic -120019 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 24756 chr6 63635628 63635732 + 0 NA promoter-TSS (NM_001290259) promoter-TSS (NM_001290259) -122 NM_001290259 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 16596 chr2 165015205 165015290 + 0 NA Intergenic Intergenic -59722 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 16718 chr2 177338232 177338336 + 0 NA intron (NR_026966, intron 2 of 8) ERVL-E-int|LTR|ERVL -24402 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 21213 chr4 17576971 17577070 + 0 NA promoter-TSS (NM_015907) promoter-TSS (NM_015907) -284 NM_015907 51056 Hs.570791 NM_015907 ENSG00000002549 LAP3 HEL-S-106|LAP|LAPEP|PEPS leucine aminopeptidase 3 protein-coding 12091 chr17 9645364 9645488 + 0 NA promoter-TSS (NM_001267576) promoter-TSS (NM_001267576) -111 NM_153210 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 13663 chr18 59780068 59780164 + 0 NA Intergenic Intergenic -82704 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 17283 chr2 232385767 232385867 + 0 NA TTS (NR_028501) TTS (NR_028501) 1227 NR_028501 347694 Hs.452575 NR_028501 ENSG00000244280 ECEL1P2 ECEL2 endothelin converting enzyme like 1 pseudogene 2 pseudo 2462 chr1 204443362 204443523 + 0 NA exon (NM_002646, exon 20 of 34) exon (NM_002646, exon 20 of 34) -31625 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 4064 chr10 91220613 91220760 + 0 NA promoter-TSS (NR_046310) promoter-TSS (NR_046310) 84 NR_046310 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 9827 chr15 31870869 31870973 + 0 NA promoter-TSS (NM_130901) promoter-TSS (NM_130901) -249 NM_130901 161725 Hs.355236 NM_130901 ENSG00000169918 OTUD7A C15orf16|C16ORF15|CEZANNE2|OTUD7 OTU deubiquitinase 7A protein-coding 4162 chr10 97543242 97543372 + 0 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) -29134 NM_001291218 26287 Hs.73708 NM_020349 ENSG00000165887 ANKRD2 ARPP ankyrin repeat domain 2 protein-coding 21368 chr4 53476672 53476749 + 0 NA intron (NM_001126328, intron 9 of 10) intron (NM_001126328, intron 9 of 10) -23367 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 17738 chr20 20452444 20452548 + 0 NA intron (NM_020343, intron 37 of 39) CpG 84375 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 2027 chr1 167936039 167936143 + 0 NA promoter-TSS (NM_001017977) promoter-TSS (NM_001017977) 110 NR_026550 25874 Hs.517768 NM_015415 ENSG00000143158 MPC2 BRP44 mitochondrial pyruvate carrier 2 protein-coding 2481 chr1 205450126 205450230 + 0 NA intron (NR_103783, intron 1 of 1) intron (NR_103783, intron 1 of 1) -1780 NR_029893 442891 NR_029893 ENSG00000199059 MIR135B MIRN135B|mir-135b microRNA 135b ncRNA 28723 chr8 133217991 133218095 + 0 NA intron (NM_001204869, intron 2 of 2) intron (NM_001204869, intron 2 of 2) 27004 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 23319 chr5 139391822 139391926 + 0 NA TTS (NM_001161546) TTS (NM_001161546) -1958 NM_016459 51237 Hs.409563 NM_016459 ENSG00000170476 MZB1 MEDA-7|PACAP|pERp1 marginal zone B and B1 cell specific protein protein-coding 22357 chr5 34656251 34656268 + 0 NA promoter-TSS (NM_001145520) promoter-TSS (NM_001145520) -69 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 11774 chr16 84643225 84643304 + 0 NA Intergenic Intergenic -5247 NM_001303451 79786 Hs.222731 NM_024731 ENSG00000135686 KLHL36 C16orf44 kelch like family member 36 protein-coding 16500 chr2 156673050 156673154 + 0 NA Intergenic Intergenic 236714 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 4045 chr10 88990707 88990899 + 0 NA promoter-TSS (NR_135314) promoter-TSS (NR_135314) 244 NR_028033 355 Hs.244139 NM_000043 ENSG00000026103 FAS ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6 Fas cell surface death receptor protein-coding 16184 chr2 113890045 113890149 + 0 NA promoter-TSS (NM_001277140) promoter-TSS (NM_001277140) 163 NM_005721 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 ARP3 actin related protein 3 homolog protein-coding 25799 chr7 20217440 20217546 + 0 NA promoter-TSS (NR_134567) promoter-TSS (NR_134567) -84 NR_134567 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 18029 chr20 41232368 41232478 + 0 NA intron (NM_015035, intron 2 of 3) MamGypsy2-LTR|LTR|Gypsy 63400 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 9029 chr14 54356433 54356537 + 0 NA Intergenic MLT1G1|LTR|ERVL-MaLR -40383 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 27967 chr8 66177195 66177197 + 0 NA exon (NM_000756, exon 2 of 2) exon (NM_000756, exon 2 of 2) 1449 NM_000756 1392 Hs.75294 NM_000756 ENSG00000147571 CRH CRF|CRH1 corticotropin releasing hormone protein-coding 1366 chr1 96309913 96310017 + 0 NA intron (NR_110693, intron 3 of 5) MER3|DNA|hAT-Charlie 64160 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 7797 chr12 122226162 122226285 + 0 NA promoter-TSS (NM_001278304) promoter-TSS (NM_001278304) -219 NR_103497 101593348 Hs.99308 NR_103497 LOC101593348 - uncharacterized LOC101593348 ncRNA 24476 chr6 36912697 36912848 + 0 NA intron (NM_152734, intron 3 of 7) intron (NM_152734, intron 3 of 7) 26908 NM_001286635 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP chromosome 6 open reading frame 89 protein-coding 1255 chr1 87956216 87956320 + 0 NA Intergenic UCON51|LTR?|LTR? -584613 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 22332 chr5 31913562 31913666 + 0 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) 22545 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 30367 chr9 136801213 136801317 + 0 NA intron (NM_001039374, intron 5 of 13) intron (NM_001039374, intron 5 of 13) 4927 NM_001039374 84960 Hs.728796 NM_032874 ENSG00000213213 CCDC183 KIAA1984|PARF|bA216L13.7 coiled-coil domain containing 183 protein-coding 16573 chr2 162926618 162926722 + 0 NA Intergenic Intergenic -87923 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 7264 chr12 72272158 72272202 + 0 NA promoter-TSS (NM_013381) promoter-TSS (NM_013381) -569 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 11590 chr16 71360566 71360610 + 0 NA intron (NR_027910, intron 1 of 9) intron (NR_027910, intron 1 of 9) 1875 NM_001740 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 21591 chr4 94207507 94207635 + 0 NA promoter-TSS (NR_125922) promoter-TSS (NR_125922) -15 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 6916 chr12 45299172 45299351 + 0 NA intron (NM_001142678, intron 1 of 19) intron (NM_001142678, intron 1 of 19) 6578 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 6976 chr12 49707564 49707716 + 0 NA promoter-TSS (NM_175736) promoter-TSS (NM_175736) -226 NM_175736 91010 Hs.179838 NM_175736 ENSG00000161791 FMNL3 FHOD3|FRL2|WBP-3|WBP3 formin like 3 protein-coding 18850 chr22 36462206 36462251 + 0 NA Intergenic Intergenic 19412 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 30210 chr9 128928026 128928130 + 0 NA intron (NM_001100877, intron 2 of 9) intron (NM_001100877, intron 2 of 9) 5795 NM_001100877 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 22482 chr5 44808802 44808917 + 0 NA promoter-TSS (NR_109862) promoter-TSS (NR_109862) -66 NR_109865 100506674 Hs.575213 NR_109862 BRCAT54 - breast cancer-associated transcript 54 ncRNA 15303 chr2 30980119 30980223 + 0 NA intron (NM_001253826, intron 3 of 15) intron (NM_001253826, intron 3 of 15) 149469 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 30381 chr9 137200832 137200967 + 0 NA promoter-TSS (NM_001128228) promoter-TSS (NM_001128228) -188 NM_001128228 286262 Hs.323445 NM_173691 ENSG00000176058 TPRN C9orf75|DFNB79 taperin protein-coding 1505 chr1 111203922 111204026 + 0 NA intron (NM_001271833, intron 1 of 11) CpG 564 NM_001271833 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 12417 chr17 38558228 38558372 + 0 NA exon (NM_025248, exon 11 of 19) exon (NM_025248, exon 11 of 19) 47630 NM_025248 80725 Hs.448872 NM_025248 ENSG00000277363 SRCIN1 P140|SNIP SRC kinase signaling inhibitor 1 protein-coding 31032 chrX 123765041 123765145 + 0 NA Intergenic Intergenic -32039 NM_001081550 57187 Hs.149991 NM_020449 ENSG00000125676 THOC2 CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 24414 chr6 33391662 33391796 + 0 NA 5' UTR (NM_002263, exon 1 of 11).2 5' UTR (NM_002263, exon 1 of 11).2 193 NM_002263 3833 Hs.436912 NM_002263 ENSG00000237649 KIFC1 HSET|KNSL2 kinesin family member C1 protein-coding 2809 chr1 224204887 224205010 + 0 NA Intergenic Intergenic 8331 NR_110669 101927143 Hs.638720 NR_110669 ENSG00000232628 LOC101927143 - uncharacterized LOC101927143 ncRNA 10669 chr15 89514941 89515037 + 0 NA intron (NR_027077, intron 1 of 2) intron (NR_027077, intron 1 of 2) 9045 NR_027077 283761 Hs.459288 NR_027074 LINC00928 - long intergenic non-protein coding RNA 928 ncRNA 28726 chr8 133328806 133328846 + 0 NA Intergenic Intergenic -31522 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 9271 chr14 68576633 68576655 + 0 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 52143 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 25285 chr6 146357850 146357878 + 0 NA intron (NM_001278065, intron 6 of 9) intron (NM_001278065, intron 6 of 9) -185828 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 18501 chr21 34813614 34813732 + 0 NA intron (NM_001001890, intron 4 of 5) intron (NM_001001890, intron 4 of 5) 67848 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 22385 chr5 36745315 36745473 + 0 NA Intergenic CpG 131300 NR_046262 646719 Hs.355684 NR_046262 NIPBL-AS1 NIPBL-AS NIPBL antisense RNA 1 (head to head) ncRNA 18899 chr22 38705578 38705607 + 0 NA promoter-TSS (NM_004286) promoter-TSS (NM_004286) -210 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 29503 chr9 90014545 90014649 + 0 NA Intergenic Intergenic 8938 NR_036253 100422963 NR_036253 ENSG00000263967 MIR4290 - microRNA 4290 ncRNA 12020 chr17 7060738 7060751 + 0 NA Intergenic Intergenic -16821 NM_153357 162515 Hs.336564 NM_153357 ENSG00000174326 SLC16A11 MCT11 solute carrier family 16 member 11 protein-coding 19803 chr3 105528076 105528244 + 0 NA intron (NM_001243281, intron 3 of 13) intron (NM_001243281, intron 3 of 13) 161447 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 23453 chr5 147531096 147531200 + 0 NA Intergenic Intergenic -21092 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 7584 chr12 106296386 106296532 + 0 NA Intergenic Intergenic -6332 NM_001286262 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 18934 chr22 40636824 40636967 + 0 NA promoter-TSS (NM_001282662) promoter-TSS (NM_001282662) -176 NM_001282661 57591 Hs.654688 NM_020831 ENSG00000196588 MKL1 BSAC|MAL|MRTF-A megakaryoblastic leukemia (translocation) 1 protein-coding 3478 chr10 27320056 27320190 + 0 NA intron (NR_138082, intron 4 of 4) intron (NR_138082, intron 4 of 4) 61361 NR_138082 101060171 Hs.568842 NR_138082 ARMC4P1 - armadillo repeat containing 4 pseudogene 1 pseudo 12677 chr17 50540100 50540251 + 0 NA intron (NM_017957, intron 5 of 9) intron (NM_017957, intron 5 of 9) -1421 NR_135675 105371824 Hs.683630 NR_135675 ENSG00000250286 LOC105371824 - uncharacterized LOC105371824 ncRNA 29957 chr9 115353725 115353829 + 0 NA intron (NM_017418, intron 4 of 7) intron (NM_017418, intron 4 of 7) 211959 NM_017418 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 8606 chr13 110307154 110307234 + 0 NA promoter-TSS (NM_001845) promoter-TSS (NM_001845) -37 NM_001303110 1282 Hs.17441 NM_001845 ENSG00000187498 COL4A1 BSVD|RATOR collagen type IV alpha 1 chain protein-coding 24058 chr6 13044544 13044648 + 0 NA intron (NM_001322314, intron 1 of 12) MLT1K|LTR|ERVL-MaLR 30940 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 11967 chr17 4731640 4731793 + 0 NA intron (NM_001305000, intron 1 of 2) CpG 308 NM_001305000 400569 Hs.513885 NM_001001683 ENSG00000161920 MED11 HSPC296 mediator complex subunit 11 protein-coding 26810 chr7 108569765 108569908 + 0 NA promoter-TSS (NM_012328) promoter-TSS (NM_012328) -68 NM_001287599 168451 Hs.707689 NM_182529 ENSG00000177683 THAP5 - THAP domain containing 5 protein-coding 6635 chr12 12891336 12891440 + 0 NA 5' UTR (NM_003979, exon 1 of 4) 5' UTR (NM_003979, exon 1 of 4) 366 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 4877 chr11 13940112 13940216 + 0 NA Intergenic Intergenic -15301 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LOC101928132 - uncharacterized LOC101928132 ncRNA 4032 chr10 87701546 87701658 + 0 NA intron (NM_001015880, intron 1 of 12) AluJr|SINE|Alu 41883 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 17717 chr20 19737147 19737289 + 0 NA Intergenic LTR37B|LTR|ERV1 -149303 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 12597 chr17 46923009 46923103 + 0 NA promoter-TSS (NM_054022) promoter-TSS (NM_054022) -61 NM_001012511 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 12938 chr17 72120861 72121000 + 0 NA promoter-TSS (NR_103737) promoter-TSS (NR_103737) -90 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box 9 protein-coding 27173 chr7 144384192 144384348 + 0 NA Intergenic Intergenic 25957 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 23721 chr5 172383352 172383456 + 0 NA intron (NM_001017995, intron 4 of 12) intron (NM_001017995, intron 4 of 12) 71119 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 19746 chr3 99085007 99085111 + 0 NA Intergenic Intergenic -183370 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 28339 chr8 101474258 101474421 + 0 NA Intergenic Intergenic -18100 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 11792 chr16 85645375 85645529 + 0 NA intron (NM_014615, intron 2 of 15) intron (NM_014615, intron 2 of 15) 32216 NM_001278184 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 3522 chr10 31101156 31101319 + 0 NA Intergenic Intergenic -69300 NM_001143767 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 29870 chr9 111728700 111728804 + 0 NA intron (NR_109816, intron 12 of 26) L1MB8|LINE|L1 30781 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 C9orf84 - chromosome 9 open reading frame 84 protein-coding 277 chr1 19034096 19034173 + 0 NA Intergenic Intergenic -77802 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 9053 chr14 55129070 55129150 + 0 NA promoter-TSS (NM_001177388) promoter-TSS (NM_001177388) -107 NM_001177388 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 21387 chr4 55734008 55734116 + 0 NA Intergenic Intergenic -86009 NR_003935 644145 Hs.570825 NR_003935 LOC644145 - exocyst complex component 1 pseudogene pseudo 13586 chr18 51235214 51235383 + 0 NA Intergenic Intergenic -37617 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 23360 chr5 140718836 140718880 + 0 NA promoter-TSS (NR_026704) promoter-TSS (NR_026704) -68 NR_026704 56663 NR_026704 ENSG00000202111 VTRNA1-2 HVG2|VAULTRC2|VR2|hvg-2 vault RNA 1-2 ncRNA 28697 chr8 131288803 131288846 + 0 NA Intergenic MER44D|DNA|TcMar-Tigger -248235 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 27371 chr8 9828648 9828752 + 0 NA Intergenic Intergenic 74629 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 8568 chr13 106568102 106568237 + 0 NA promoter-TSS (NM_018011) promoter-TSS (NM_018011) -3 NM_018011 55082 Hs.508644 NM_018011 ENSG00000134884 ARGLU1 - arginine and glutamate rich 1 protein-coding 8989 chr14 51395479 51395583 + 0 NA Intergenic Intergenic 62138 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 15509 chr2 47369171 47369338 + 0 NA 5' UTR (NM_002354, exon 1 of 9) 5' UTR (NM_002354, exon 1 of 9) 106 NM_002354 4072 Hs.542050 NM_002354 ENSG00000119888 EPCAM DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1 epithelial cell adhesion molecule protein-coding 16225 chr2 120223692 120223698 + 0 NA promoter-TSS (NM_024121) promoter-TSS (NM_024121) -287 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 25512 chr7 149142 149297 + 0 NA promoter-TSS (NR_108064).2 promoter-TSS (NR_108064).2 219 NR_134325 102723672 Hs.605204 NR_134325 LOC102723672 - uncharacterized LOC102723672 ncRNA 8107 chr13 34469439 34469532 + 0 NA intron (NR_047036, intron 2 of 2) intron (NR_047036, intron 2 of 2) 171200 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 2215 chr1 183471882 183471886 + 0 NA promoter-TSS (NM_173156) promoter-TSS (NM_173156) 98 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 11155 chr16 24701139 24701260 + 0 NA Intergenic L3|LINE|CR1 -28529 NM_001330520 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 2671 chr1 214477080 214477215 + 0 NA intron (NM_005401, intron 1 of 18) intron (NM_005401, intron 1 of 18) 74534 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 27422 chr8 13246919 13247004 + 0 NA intron (NM_182643, intron 5 of 17) intron (NM_182643, intron 5 of 17) 29587 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 23781 chr5 177006752 177006910 + 0 NA promoter-TSS (NM_016290) promoter-TSS (NM_016290) -37 NM_001199298 51720 Hs.232721 NM_016290 ENSG00000087206 UIMC1 RAP80|X2HRIP110 ubiquitin interaction motif containing 1 protein-coding 22257 chr5 14686651 14686793 + 0 NA intron (NM_138348, intron 4 of 6) intron (NM_138348, intron 4 of 6) 22077 NM_138348 90268 Hs.406335 NM_138348 ENSG00000154124 OTULIN AIPDS|FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 15121 chr2 19363068 19363222 + 0 NA Intergenic CpG -4534 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transciption factor 1 protein-coding 7818 chr12 123063048 123063187 + 0 NA intron (NM_001300801, intron 1 of 24) intron (NM_001300801, intron 1 of 24) -18267 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 LOC100507091 - uncharacterized LOC100507091 ncRNA 5497 chr11 65860391 65860476 + 0 NA promoter-TSS (NM_025128) promoter-TSS (NM_025128) 32 NM_025128 80198 Hs.288798 NM_025128 ENSG00000172732 MUS81 SLX3 MUS81 structure-specific endonuclease subunit protein-coding 24683 chr6 52156188 52156292 + 0 NA Intergenic Intergenic -5217 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 28192 chr8 93095881 93095985 + 0 NA Intergenic MLT1F2|LTR|ERVL-MaLR 66182 NR_107051 102467005 NR_107051 ENSG00000277063 MIR8084 hsa-mir-8084 microRNA 8084 ncRNA 27598 chr8 27366670 27366818 + 0 NA intron (NM_173175, intron 1 of 29) intron (NM_173175, intron 1 of 29) 41180 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 27001 chr7 130010445 130010541 + 0 NA Intergenic Intergenic 40958 NM_001282190 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 HSPC216|NIPA zinc finger C3HC-type containing 1 protein-coding 11795 chr16 85746500 85746672 + 0 NA intron (NM_206967, intron 1 of 3) intron (NM_206967, intron 1 of 3) 4497 NM_206967 404550 Hs.461655 NM_206967 ENSG00000154102 C16orf74 - chromosome 16 open reading frame 74 protein-coding 28452 chr8 115738681 115738821 + 0 NA Intergenic L2c|LINE|L2 -69723 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 29864 chr9 111483184 111483212 + 0 NA intron (NM_001080398, intron 3 of 50) CpG 1547 NM_001080398 23392 Hs.368255 NM_001080398 ENSG00000136813 KIAA0368 ECM29 KIAA0368 protein-coding 28410 chr8 108080581 108080685 + 0 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 1306 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2 R-spondin 2 protein-coding 7607 chr12 107515669 107515773 + 0 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) -65136 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 30755 chrX 54808791 54808795 + 0 NA promoter-TSS (NM_201222) promoter-TSS (NM_201222) -267 NM_201222 10916 Hs.522665 NM_014599 ENSG00000102316 MAGED2 11B6|BARTS5|BCG-1|BCG1|HCA10|MAGE-D2 MAGE family member D2 protein-coding 26660 chr7 98252136 98252288 + 0 NA promoter-TSS (NM_015395) promoter-TSS (NM_015395) 39 NM_015395 25851 Hs.592281 NM_015395 ENSG00000205356 TECPR1 - tectonin beta-propeller repeat containing 1 protein-coding 25715 chr7 14233496 14233553 + 0 NA intron (NM_145695, intron 22 of 23) intron (NM_145695, intron 22 of 23) -242099 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 17903 chr20 34526067 34526194 + 0 NA intron (NM_001281728, intron 2 of 4) intron (NM_001281728, intron 2 of 4) 9746 NM_001281728 83658 Hs.593920 NM_014183 ENSG00000125971 DYNLRB1 BITH|BLP|DNCL2A|DNLC2A|ROBLD1 dynein light chain roadblock-type 1 protein-coding 16609 chr2 167292909 167293038 + 0 NA Intergenic CpG 105690 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 14710 chr19 50004137 50004241 + 0 NA intron (NM_001025778, intron 4 of 13) intron (NM_001025778, intron 4 of 13) 21197 NM_001308420 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - vaccinia related kinase 3 protein-coding 28753 chr8 136555937 136556041 + 0 NA Intergenic Tigger7|DNA|TcMar-Tigger 857599 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 2520 chr1 207053020 207053174 + 0 NA promoter-TSS (NM_006212) promoter-TSS (NM_006212) -117 NM_001276320 55432 Hs.567533 NM_018566 ENSG00000180667 YOD1 DUBA8|OTUD2|PRO0907 YOD1 deubiquitinase protein-coding 26007 chr7 33062682 33062836 + 0 NA promoter-TSS (NM_001002009) promoter-TSS (NM_001002009) 38 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 12848 chr17 64506441 64506545 + 0 NA promoter-TSS (NM_001320597) promoter-TSS (NM_001320597) 28 NM_004396 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 88 chr1 6601250 6601354 + 0 NA intron (NM_014851, intron 1 of 3) intron (NM_014851, intron 1 of 3) 1596 NM_001324309 9903 Hs.7764 NM_014851 ENSG00000162413 KLHL21 - kelch like family member 21 protein-coding 8360 chr13 75359360 75359464 + 0 NA intron (NM_014832, intron 3 of 20) intron (NM_014832, intron 3 of 20) 118824 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 10227 chr15 60592492 60592681 + 0 NA promoter-TSS (NM_134262) promoter-TSS (NM_134262) -78 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 29668 chr9 98244094 98244184 + 0 NA intron (NR_051978, intron 1 of 11) intron (NR_051978, intron 1 of 11) 11582 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 13516 chr18 47150386 47150525 + 0 NA promoter-TSS (NM_001318765) promoter-TSS (NM_001318765) 45 NM_032124 84064 Hs.465041 NM_032124 ENSG00000167220 HDHD2 3110052N05Rik|HEL-S-301 haloacid dehalogenase like hydrolase domain containing 2 protein-coding 23330 chr5 139877382 139877415 + 0 NA intron (NM_013983, intron 3 of 10) intron (NM_013983, intron 3 of 10) 81577 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 12119 chr17 13018019 13018188 + 0 NA promoter-TSS (NM_018127) promoter-TSS (NM_018127) -39 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 24222 chr6 26183627 26183726 + 0 NA promoter-TSS (NM_003523) promoter-TSS (NM_003523) -120 NM_003523 8344 Hs.534369 NM_003523 ENSG00000274290 HIST1H2BE H2B.h|H2B/h|H2BFH|dJ221C16.8 histone cluster 1 H2B family member e protein-coding 18378 chr20 62160018 62160139 + 0 NA intron (NM_001301778, intron 4 of 11) intron (NM_001301778, intron 4 of 11) 16358 NR_125981 26039 Hs.154429 NM_015558 ENSG00000184402 SS18L1 CREST|LP2261 SS18L1, nBAF chromatin remodeling complex subunit protein-coding 7117 chr12 56079085 56079208 + 0 NA promoter-TSS (NM_001982) promoter-TSS (NM_001982) -879 NM_001982 2065 Hs.118681 NM_001982 ENSG00000065361 ERBB3 ErbB-3|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 erb-b2 receptor tyrosine kinase 3 protein-coding 3438 chr10 24428426 24428530 + 0 NA intron (NM_001098500, intron 4 of 18) intron (NM_001098500, intron 4 of 18) -20955 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 SKT KIAA1217 protein-coding 10189 chr15 58987587 58987700 + 0 NA promoter-TSS (NM_001270529) promoter-TSS (NM_001270529) -23 NM_017610 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK ring finger protein 111 protein-coding 29160 chr9 70120977 70121081 + 0 NA intron (NR_125850, intron 5 of 13) intron (NR_125850, intron 5 of 13) 54859 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 27938 chr8 63168251 63168280 + 0 NA promoter-TSS (NM_001277813) promoter-TSS (NM_001277813) 177 NR_102684 101410533 Hs.163027 NR_102684 ENSG00000270673 YTHDF3-AS1 - YTHDF3 antisense RNA 1 (head to head) ncRNA 18873 chr22 37696870 37696997 + 0 NA promoter-TSS (NM_001039141) promoter-TSS (NM_001039141) -55 NM_001039141 11078 Hs.533030 NM_007032 ENSG00000100106 TRIOBP DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 26841 chr7 112939998 112940102 + 0 NA promoter-TSS (NM_152556) promoter-TSS (NM_152556) -173 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60 base methyltransferase of 25S rRNA 2 homolog protein-coding 30376 chr9 137070551 137070655 + 0 NA promoter-TSS (NM_178448) promoter-TSS (NM_178448) -27 NM_178448 89958 Hs.19322 NM_178448 ENSG00000186193 SAPCD2 C9orf140|p42.3 suppressor APC domain containing 2 protein-coding 28644 chr8 127735248 127735371 + 0 NA promoter-TSS (NM_002467) promoter-TSS (NM_002467) -760 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc v-myc avian myelocytomatosis viral oncogene homolog protein-coding 30458 chrX 6024282 6024386 + 0 NA intron (NM_020742, intron 3 of 5) intron (NM_020742, intron 3 of 5) -202024 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 1629 chr1 145706337 145706487 + 0 NA intron (NM_002614, intron 1 of 9) intron (NM_002614, intron 1 of 9) 988 NM_001201325 5174 Hs.444751 NM_002614 ENSG00000174827 PDZK1 CAP70|CLAMP|NHERF-3|NHERF3|PDZD1 PDZ domain containing 1 protein-coding 30388 chr9 137411782 137411886 + 0 NA intron (NR_104599, intron 1 of 2) intron (NR_104599, intron 1 of 2) 11428 NR_104599 54932 Hs.495553 NM_017820 ENSG00000187609 EXD3 mut-7 exonuclease 3'-5' domain containing 3 protein-coding 6576 chr12 9273331 9273338 + 0 NA Intergenic Intergenic -10323 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 23771 chr5 176361724 176361883 + 0 NA promoter-TSS (NM_001079684) promoter-TSS (NM_001079684) 4 NR_109799 57179 Hs.743257 NM_020444 ENSG00000122203 KIAA1191 p33MONOX|p60MONOX KIAA1191 protein-coding 4197 chr10 99667110 99667214 + 0 NA intron (NM_020354, intron 3 of 12) intron (NM_020354, intron 3 of 12) 7656 NM_020354 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 9691 chr14 101972499 101972649 + 0 NA intron (NM_001376, intron 1 of 77) intron (NM_001376, intron 1 of 77) 8046 NM_001376 1778 Hs.614080 NM_001376 ENSG00000197102 DYNC1H1 CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein cytoplasmic 1 heavy chain 1 protein-coding 12697 chr17 51260038 51260191 + 0 NA promoter-TSS (NM_016001) promoter-TSS (NM_016001) -48 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 28480 chr8 118018715 118018819 + 0 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 93052 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 26653 chr7 98054738 98054842 + 0 NA Intergenic AluJr|SINE|Alu -52095 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 15477 chr2 45938874 45939028 + 0 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 287047 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 14875 chr19 58451465 58451618 + 0 NA promoter-TSS (NM_207395) promoter-TSS (NM_207395) -63 NM_207395 388569 Hs.186970 NM_207395 ENSG00000249471 ZNF324B - zinc finger protein 324B protein-coding 19076 chr3 3179653 3179791 + 0 NA promoter-TSS (NM_001173482) promoter-TSS (NM_001173482) -5 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 24967 chr6 106119683 106119787 + 0 NA Intergenic Intergenic 20873 NM_182907 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 28318 chr8 100952843 100952997 + 0 NA promoter-TSS (NM_145690) promoter-TSS (NM_145690) 73 NM_001135699 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 6053 chr11 110712399 110712503 + 0 NA promoter-TSS (NM_001258415) promoter-TSS (NM_001258415) 277 NM_020809 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 14752 chr19 52140043 52140147 + 0 NA promoter-TSS (NM_178523) promoter-TSS (NM_178523) -157 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 30434 chrX 386981 386994 + 0 NA promoter-TSS (NM_013239) promoter-TSS (NM_013239) -32 NM_013239 28227 Hs.124942 NM_013239 ENSG00000167393 PPP2R3B NYREN8|PPP2R3L|PPP2R3LY|PR48 protein phosphatase 2 regulatory subunit B''beta protein-coding 16274 chr2 127387469 127387548 + 0 NA Intergenic CpG -30912 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 28123 chr8 85354751 85354895 + 0 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) -13109 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 26315 chr7 55546925 55547089 + 0 NA intron (NM_030796, intron 1 of 4) intron (NM_030796, intron 1 of 4) 5766 NM_001284282 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding 4382 chr10 113362635 113362739 + 0 NA Intergenic Intergenic -188144 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 16196 chr2 118363746 118363850 + 0 NA Intergenic L1MB4|LINE|L1 -177412 NR_144530 100506797 Hs.116176 NR_144530 LOC100506797 - uncharacterized LOC100506797 ncRNA 23003 chr5 110478962 110479119 + 0 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 34875 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 20673 chr3 174127530 174127634 + 0 NA intron (NM_014932, intron 4 of 6) intron (NM_014932, intron 4 of 6) -206786 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 2885 chr1 228082474 228082578 + 0 NA promoter-TSS (NM_001658) promoter-TSS (NM_001658) -134 NM_001658 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 8579 chr13 108911955 108912059 + 0 NA intron (NM_001198950, intron 16 of 34) intron (NM_001198950, intron 16 of 34) 255296 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 15982 chr2 96816146 96816317 + 0 NA promoter-TSS (NM_017623) promoter-TSS (NM_017623) -23 NM_199078 26505 Hs.711617 NM_017623 ENSG00000168763 CNNM3 ACDP3 cyclin and CBS domain divalent metal cation transport mediator 3 protein-coding 21553 chr4 86977844 86977971 + 0 NA intron (NM_001166693, intron 2 of 20) L2c|LINE|L2 -29081 NM_001313959 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 17884 chr20 33732063 33732100 + 0 NA intron (NR_104259, intron 1 of 13) CpG 321 NM_001282935 84905 Hs.516989 NM_032819 ENSG00000131061 ZNF341 - zinc finger protein 341 protein-coding 28614 chr8 126536563 126536670 + 0 NA Intergenic Intergenic 21850 NM_174911 157638 Hs.741352 NM_174911 ENSG00000168672 FAM84B BCMP101|NSE2 family with sequence similarity 84 member B protein-coding 12960 chr17 73232251 73232402 + 0 NA promoter-TSS (NM_001098832) promoter-TSS (NM_001098832) 68 NM_001289411 84923 Hs.741276 NM_032837 ENSG00000133193 FAM104A - family with sequence similarity 104 member A protein-coding 24736 chr6 56642908 56643053 + 0 NA promoter-TSS (NM_001723) promoter-TSS (NM_001723) -84 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 19543 chr3 52217162 52217283 + 0 NA Intergenic Intergenic 8941 NM_017442 54106 Hs.87968 NM_017442 ENSG00000239732 TLR9 CD289 toll like receptor 9 protein-coding 26915 chr7 121421067 121421257 + 0 NA Intergenic L2a|LINE|L2 -24794 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 19336 chr3 36372585 36372644 + 0 NA Intergenic L2c|LINE|L2 -7873 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 16702 chr2 176269375 176269479 + 0 NA promoter-TSS (NM_006554) promoter-TSS (NM_006554) 32 NM_001006635 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 28025 chr8 73420018 73420133 + 0 NA promoter-TSS (NR_038406) promoter-TSS (NR_038406) 1 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 18885 chr22 37999950 38000084 + 0 NA intron (NM_001301130, intron 5 of 5) intron (NM_001301130, intron 5 of 5) 11223 NR_039759 100616146 NR_039759 ENSG00000279010 MIR4534 - microRNA 4534 ncRNA 13668 chr18 59899885 59899961 + 0 NA promoter-TSS (NM_021127) promoter-TSS (NM_021127) -37 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 29350 chr9 80377106 80377148 + 0 NA Intergenic MIRc|SINE|MIR 402104 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 27394 chr8 11802510 11802626 + 0 NA promoter-TSS (NM_004462) promoter-TSS (NM_004462) -43 NM_004462 2222 Hs.593928 NM_004462 ENSG00000079459 FDFT1 DGPT|ERG9|SQS|SS farnesyl-diphosphate farnesyltransferase 1 protein-coding 15940 chr2 88497811 88497915 + 0 NA Intergenic Intergenic -26788 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 30882 chrX 101052069 101052084 + 0 NA promoter-TSS (NM_001167970) promoter-TSS (NM_001167970) 40 NM_001167971 79979 Hs.496501 NM_024917 ENSG00000188917 TRMT2B CXorf34|dJ341D10.3 tRNA methyltransferase 2 homolog B protein-coding 21450 chr4 74445032 74445171 + 0 NA promoter-TSS (NM_001657) promoter-TSS (NM_001657) 3 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 15394 chr2 38947354 38947446 + 0 NA intron (NM_001145451, intron 8 of 15) AluJr|SINE|Alu 12944 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA