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{"sheet":"LASSO_MARKERS","index":0,"n_rows":83,"n_cols":6,"rows_kept":83}
["Comparison","Gene","Alteration","Mean contribution","Effect on phenotype","Genes in arm (from COSMIC)"]
["MES-EPI","ARHGAP26","AMP",0.154297822258663,"positive",{"$error":"#N/A"}]
["MES-EPI","BAP1","DEL",-0.0895825730954111,"negative",{"$error":"#N/A"}]
["MES-EPI","CDC73","AMP",-0.0897079648004936,"negative",{"$error":"#N/A"}]
["MES-EPI","CHIC2","SNV",1.03176759099934,"positive",{"$error":"#N/A"}]
["MES-EPI","ECT2L","DEL",0.114262757393851,"positive",{"$error":"#N/A"}]
["MES-EPI","ELK4","AMP",-0.108267971349053,"negative",{"$error":"#N/A"}]
["MES-EPI","ELL","AMP",0.152461499862541,"positive",{"$error":"#N/A"}]
["MES-EPI","ERBB2","AMP",-0.262061036873838,"negative",{"$error":"#N/A"}]
["MES-EPI","ERBB3","SNV",-0.33411950847411,"negative",{"$error":"#N/A"}]
["MES-EPI","FLT4","AMP",0.251109701466012,"positive",{"$error":"#N/A"}]
["MES-EPI","IKZF3","AMP",-0.0621220971377383,"negative",{"$error":"#N/A"}]
["MES-EPI","KDM5C","DEL",0.0536987297914269,"positive",{"$error":"#N/A"}]
["MES-EPI","PRDM1","DEL",0.100718152743515,"positive",{"$error":"#N/A"}]
["MES-EPI","RB1","SNV",0.293377806846483,"positive",{"$error":"#N/A"}]
["MES-EPI","SMC1A","DEL",0.083723795090102,"positive",{"$error":"#N/A"}]
["MES-EPI","TFG","AMP",-0.0664330058071154,"negative",{"$error":"#N/A"}]
["MES-EPI","TFG","DEL",-0.154546664874052,"negative",{"$error":"#N/A"}]
["MES-EPI","TMPRSS2","DEL",0.0960134591480429,"positive",{"$error":"#N/A"}]
["MES-EPI","TRIM24","SNV",0.338304227009596,"positive",{"$error":"#N/A"}]
["MES-EPI","VHL","SNV",0.488863011453921,"positive",{"$error":"#N/A"}]
["MES-EPI","17p","del",0.0986891578089508,"positive","YWHAE,USP6,RABEP1,TP53,PER1,GAS7,MAP2K4,NCOR1,FLCN,SPECC1"]
["MES-EPI","6p","del",0.135723917874019,"positive","IRF4,DEK,TRIM27,HLA-A,POU5F1,DAXX,HMGA1,FANCE,SRSF3,CDKN1A,PIM1,TFEB,CCND3,HSP90AB1,NFKBIE,BMP5"]
["MES-EPI","ZNRF3","DEL",-0.0945665484916778,"negative",{"$error":"#N/A"}]
["MES-EPI","ZRSR2","DEL",0.212678457630509,"positive",{"$error":"#N/A"}]
["hEMT-EPI","ABI1","DEL",-0.0657819453310952,"negative",{"$error":"#N/A"}]
["hEMT-EPI","BTG1","SNV",-0.138670361767922,"negative",{"$error":"#N/A"}]
["hEMT-EPI","CD209","SNV",-0.172220196215505,"negative",{"$error":"#N/A"}]
["hEMT-EPI","CDKN2A","DEL",-0.0506191294015804,"negative",{"$error":"#N/A"}]
["hEMT-EPI","CTNNB1","DEL",-0.11797657136053,"negative",{"$error":"#N/A"}]
["hEMT-EPI","EPAS1","DEL",0.0703183178072639,"positive",{"$error":"#N/A"}]
["hEMT-EPI","ERCC3","DEL",0.0381335297502146,"positive",{"$error":"#N/A"}]
["hEMT-EPI","ETV6","SNV",0.100223627418111,"positive",{"$error":"#N/A"}]
["hEMT-EPI","EWSR1","SNV",0.121805643931164,"positive",{"$error":"#N/A"}]
["hEMT-EPI","FGFR3","SNV",-0.0544180883947502,"negative",{"$error":"#N/A"}]
["hEMT-EPI","FNBP1","SNV",-0.248618273864649,"negative",{"$error":"#N/A"}]
["hEMT-EPI","FOXO3","DEL",0.03485968910534,"positive",{"$error":"#N/A"}]
["hEMT-EPI","Genome","doublings",-0.0469068990412299,"negative",{"$error":"#N/A"}]
["hEMT-EPI","GPHN","AMP",0.0588255606916416,"positive",{"$error":"#N/A"}]
["hEMT-EPI","HRAS","SNV",0.120901538071532,"positive",{"$error":"#N/A"}]
["hEMT-EPI","KLF6","DEL",-0.062375326614971,"negative",{"$error":"#N/A"}]
["hEMT-EPI","LMO1","AMP",0.043923076851593,"positive",{"$error":"#N/A"}]
["hEMT-EPI","MED12","SNV",0.0534880855636418,"positive",{"$error":"#N/A"}]
["hEMT-EPI","MN1","AMP",0.0554864267687444,"positive",{"$error":"#N/A"}]
["hEMT-EPI","NCKIPSD","AMP",-0.0831064589665055,"negative",{"$error":"#N/A"}]
["hEMT-EPI","NTRK3","SNV",0.0611194574687089,"positive",{"$error":"#N/A"}]
["hEMT-EPI","OR2T8","SNV",0.108940812885918,"positive",{"$error":"#N/A"}]
["hEMT-EPI","PIK3CA","DEL",0.0791574358957545,"positive",{"$error":"#N/A"}]
["hEMT-EPI","PPP6C","AMP",0.0349515436302337,"positive",{"$error":"#N/A"}]
["hEMT-EPI","RAF1","AMP",-0.0843204714981561,"negative",{"$error":"#N/A"}]
["hEMT-EPI","RGPD3","DEL",0.0708355517553497,"positive",{"$error":"#N/A"}]
["hEMT-EPI","SETD2","DEL",-0.0577409588889553,"negative",{"$error":"#N/A"}]
["hEMT-EPI","SMAD4","DEL",-0.0397932955188577,"negative",{"$error":"#N/A"}]
["hEMT-EPI","SMAD4","SNV",0.06669388969693,"positive",{"$error":"#N/A"}]
["hEMT-EPI","SUFU","AMP",-0.117501443728347,"negative",{"$error":"#N/A"}]
["hEMT-EPI","TFPT","SNV",0.250604227165557,"positive",{"$error":"#N/A"}]
["hEMT-EPI","TGFBR2","DEL",-0.106359382883814,"negative",{"$error":"#N/A"}]
["hEMT-EPI","TMPRSS2","SNV",-0.105404847368478,"negative",{"$error":"#N/A"}]
["hEMT-EPI","TP63","AMP",0.0315516521702675,"positive",{"$error":"#N/A"}]
["hEMT-EPI","TRIM24","AMP",-0.034771407301936,"negative",{"$error":"#N/A"}]
["hEMT-EPI","UBR5","AMP",0.0419131580207043,"positive",{"$error":"#N/A"}]
["hEMT-EPI","10p","amp",-0.043928967927472,"negative","LARP4B,KLF6,GATA3,MLLT10,ABI1,ZEB1,KIF5B"]
["hEMT-EPI","17q","amp",-0.0580220899429183,"negative","NF1,SUZ12,TAF15,MLLT6,LASP1,CDK12,ERBB2,RARA,CCR7,SMARCE1,STAT5B,STAT3,BRCA1,ETV4,SPOP,KAT7,COL1A1,HLF,MSI2,RNF43,CLTC,PPM1D,BRIP1,CD79B,DDX5,AXIN2,PRKAR1A,SRSF2,CANT1,RNF213,ASPSCR1"]
["hEMT-EPI","3p","del",-0.0762000689017551,"negative","SRGAP3,FANCD2,VHL,PPARG,RAF1,FBLN2,XPC,TGFBR2,CCR4,MLH1,MYD88,CTNNB1,SETD2,NCKIPSD,RHOA,BAP1,PBRM1,CACNA1D,FHIT,MITF,FOXP1,ROBO2,EPHA3"]
["hEMT-EPI","8p","del",-0.0959236077208354,"negative","ARHGEF10,PCM1,LEPROTL1,WRN,NRG1,NSD3,FGFR1,ANK1,KAT6A,IKBKB,HOOK3"]
["hEMT-EPI","9q","del",0.0376490497432621,"positive","CCNE1,CEP89,CEBPA,LSM14A,AKT2,CD79A,CIC,BCL3,CBLC,ERCC2,BAX,BCL2L12,POLD1,KLK2,PPP2R1A,ZNF331,TFPT,CNOT3"]
["hEMT-EPI","ZEB1","DEL",-0.0657335401744767,"negative",{"$error":"#N/A"}]
["MES-hEMT","APC","AMP",0.0999809696767967,"positive",{"$error":"#N/A"}]
["MES-hEMT","APC","SNV",-0.0613354053475476,"negative",{"$error":"#N/A"}]
["MES-hEMT","ARHGAP26","AMP",0.262078327616115,"positive",{"$error":"#N/A"}]
["MES-hEMT","ARID1A","DEL",0.0624094207907136,"positive",{"$error":"#N/A"}]
["MES-hEMT","CHIC2","SNV",1.12133688548827,"positive",{"$error":"#N/A"}]
["MES-hEMT","DEK","DEL",0.107720972138105,"positive",{"$error":"#N/A"}]
["MES-hEMT","ERBB2","AMP",-0.078038570271978,"negative",{"$error":"#N/A"}]
["MES-hEMT","IKZF3","AMP",-0.0663205488518922,"negative",{"$error":"#N/A"}]
["MES-hEMT","KDM5C","DEL",0.0941247681037154,"positive",{"$error":"#N/A"}]
["MES-hEMT","MSH2","AMP",-0.084833074533623,"negative",{"$error":"#N/A"}]
["MES-hEMT","PIK3CA","AMP",-0.0616713762424198,"negative",{"$error":"#N/A"}]
["MES-hEMT","RB1","SNV",0.162020035840195,"positive",{"$error":"#N/A"}]
["MES-hEMT","RHOA","AMP",0.142591105537229,"positive",{"$error":"#N/A"}]
["MES-hEMT","SLC45A3","AMP",-0.0601345267438363,"negative",{"$error":"#N/A"}]
["MES-hEMT","TFG","AMP",-0.0747314953517011,"negative",{"$error":"#N/A"}]
["MES-hEMT","4p","del",0.256547002703876,"positive","FGFR3,NSD2,SLC34A2,N4BP2,RHOH,PHOX2B,TEC"]