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Question/comparisonValuesStatistical test and n numbersstat results
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All responses
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# reliable responsesstat/run/bothMcNemar test
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does proportion of reliable responses vary between states?Total responses = 9,498 (per state)(+stat+run, +stat-run
-stat+run, -stat-run)
p=0
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Stat reliable resps = 2,077 (21.87%) 1807 270
995 6426
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Run reliable resps = 2,802 (29.5%)
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Both reliable resps = 1,807 (19.03%)
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onset/offset featuresProportions (Decay, Rise, Peak, Trough, Flat)Binomial GLMEs
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does proportion of features vary between states?propStatOn = 0.0896 0.1247 0.6856 0.0515 0.0486independent GLME for each feature, equation:
pVal_onset = 0.1291    0.0000   0.0000    0.1222    0.0986
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propRunOn = 0.0774 0.4336 0.4079 0.0421 0.0389fet ~ state + (1|session)
pVal_offset = 0.0000 0.0037 0.0996 0.0000 0.0000
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propStatOff =0.4612 0.0558 0.0823 0.1223 0.2783n numbers are stat/run reliable responses (see above)
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propRunOff =0.5496 0.0771 0.0960 0.0846 0.1927
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sustainednessLME
pValue for state = 5.3278e-103
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does sustainedness of responses vary between states?Quantiles (median and IQR)n numbers are both reliable responses
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Stat: 0.1829 0.3193 0.4846sustainedness ~ state + (1|unit) + (1|session)
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Run: 0.3229 0.4826 0.6161
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Mean and peak firing rate changes
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Do mean and peak firing rates change by the same fractional amount?Quantiles (median and IQR)signrank(log2(meanFR_fracChange), log2(peakFR_fracChange))p = 1.5994e-138
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Mean rate (baseline corrected)n numbers are both reliable responses
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Stat: 1.4219 3.2061 6.2320
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Run: 1.2405 5.4136 12.1279
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Peak rate (baseline corrected)
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Stat: 5.5777 10.0790 19.2957
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Run: 5.3432 12.9791 25.7037
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Fractional change in mean: 1.0999 2.0281 4.0721
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Fractional change in peak: 0.7297 1.1714 1.7186
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Visual speeds (Fig S1)
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Response featuresProportions (Decay, Rise, Peak, Trough, Flat)Binomial GLMEs as above, separate for each speed
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statProp_onset: [0.0994 0.0426 0.7983 0.0284 0.0312]
# reliable responses
pVal_onset: [0.0064 8.1154e-17 9.5748e-13 0.0490 0.1644]
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runProp_onset: [0.0495 0.3237 0.5526 0.0577 0.0165]
nStat: 352
pVal_offset: [2.8582e-13 0.5581 0.0158 0.0633 1.1693e-19]
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statProp_offset: [0.2188 0.0540 0.0852 0.0284 0.6136]
nRun:485
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runProp_offset: [0.4660 0.0454 0.1402 0.0557 0.2928]
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statProp_onset: [0.0628 0.2120 0.6283 0.0524 0.0445]
nStat:382
pVal_onset: [0.7352 3.8472e-13 2.5451e-11 0.1012 0.6849]
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runProp_onset: [0.0685 0.4476 0.4032 0.0302 0.0504]
nRun: 496
pVal_offset: [0.2535 0.7394 0.2914 3.2750e-04 0.7611]
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statProp_offset: [0.4791 0.0707 0.0890 0.1309 0.2304]
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runProp_offset: [0.5101 0.0766 0.1109 0.0605 0.2419]
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statProp_onset: [0.0765 0.1831 0.6311 0.0710 0.0383]
nStat:366
pVal_onset: [0.6839 3.4120e-20 3.2140e-17 0.0584 0.8352]
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runProp_onset: [0.0842 0.4928 0.3409 0.0411 0.0411]
nRun: 487
pVal_offset: [0.0057 0.4587 0.6270 0.2657 0.0052]
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statProp_offset: [0.5000 0.0628 0.0984 0.1148 0.2240]
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runProp_offset: [0.5893 0.0760 0.0883 0.0924 0.1540]
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statProp_onset: [0.0978 0.1201 0.6704 0.0447 0.0670]
nStat:358
pVal_onset: [0.2743 4.1914e-23 9.8567e-18 0.3337 0.5595]
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runProp_onset: [0.0763 0.4746 0.3602 0.0318 0.0572]
nRun: 472
pVal_offset: [0.3132 0.0016 0.4402 0.0425 0.2519]
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statProp_offset: [0.5251 0.0335 0.0866 0.1564 0.1983]
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runProp_offset: [0.5593 0.0911 0.0720 0.1102 0.1674]
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statProp_onset: [0.1061 0.0772 0.6913 0.0450 0.0804]
nStat:311
pVal_onset: [0.7309 5.6576e-21 3.4326e-16 0.8140 0.0176]
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runProp_onset: [0.0985 0.4420 0.3786 0.0416 0.0394]
nRun: 457
pVal_offset: [0.2423 0.0397 0.8032 0.0577 0.1400]
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statProp_offset: [0.5305 0.0514 0.0675 0.1640 0.1865]
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runProp_offset: [0.5733 0.0919 0.0722 0.1160 0.1466]
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statProp_onset: [0.1006 0.0942 0.7045 0.0682 0.0325]
nStat:308
pVal_onset: [0.6759 3.9831e-18 5.3267e-14 0.3371 0.6785]
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runProp_onset: [0.0914 0.4198 0.4099 0.0519 0.0272]
nRun: 405
pVal_offset: [0.0199 0.2782 0.2020 0.0026 0.0244]
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statProp_offset: [0.5260 0.0617 0.0617 0.1461 0.2045]
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runProp_offset: [0.6123 0.0840 0.0889 0.0741 0.1407]
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Sustainedness IndexQuantiles: top = stat, bottom = run1.0e-16 *
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00.1198 0.2115 0.3377nBoth: 3110.4935
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0.2344 0.3855 0.5134
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160.1987 0.3361 0.4998nBoth: 3390.2928
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0.3165 0.4800 0.6271
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320.2047 0.3577 0.4876nBoth: 3280
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0.3535 0.5162 0.6473
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640.2016 0.3587 0.5261nBoth: 3090.9516
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0.3609 0.5023 0.6249
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1280.2105 0.3632 0.5104nBoth: 2660.0035
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0.3606 0.5148 0.6430
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2560.2039 0.3541 0.4806nBoth: 2540.1038
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0.3482 0.5001 0.6054
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Cell types (Fig S2)
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Response featuresProportions (Decay, Rise, Peak, Trough, Flat)Binomial GLMEs as above, separate for each cell-type
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Pyramidal
statProp_onset: [0.1039 0.1419 0.6503 0.0390 0.0649]
# reliable responses
pVal_onset: [0.3719 7.2090e-41 1.3987e-29 0.5967 0.1653]
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runProp_onset: [0.0929 0.4093 0.4115 0.0348 0.0515]
nStat: 1001
pVal_offset: [7.4961e-05 0.0880 0.6359 7.4715e-04 9.7084e-04]
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statProp_offset: [0.4625 0.0569 0.1009 0.0959 0.2837]
nRun: 1378
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runProp_offset: [0.5450 0.0747 0.0951 0.0595 0.2257]
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Narrow Interneurons
statProp_onset: [0.0452 0.1036 0.7495 0.0640 0.0377]
nStat: 531
pVal_onset: [0.4061 3.1015e-33 1.1981e-24 0.0076 0.4231]
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runProp_onset: [0.0360 0.4453 0.4569 0.0322 0.0296]
nRun: 777
pVal_offset: [1.1451e-06 0.0886 0.8000 0.9661 3.7003e-10]
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statProp_offset: [0.4388 0.0433 0.0734 0.0734 0.3710]
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runProp_offset: [0.5663 0.0656 0.0772 0.0734 0.2175]
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Wide Internuerons
statProp_onset: [0.1064 0.1138 0.6881 0.0624 0.0294]
nStat: 545
pVal_onset: [0.4636 3.0446e-34 5.5207e-30 0.6826 0.5057]
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runProp_onset: [0.0943 0.4714 0.3416 0.0696 0.0232]
nRun: 647
pVal_offset: [0.0347 0.0714 2.2970e-04 0.0023 2.1178e-05]
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statProp_offset: [0.4807 0.0661 0.0569 0.2183 0.1780]
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runProp_offset: [0.5394 0.0958 0.1206 0.1515 0.0927]
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Sustainedness IndexQuantiles: top = stat, bottom = runLME, as above, separetly for cell-types
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PyramidalsusIndexQuant_stat: [0.1924 0.3153 0.4752]nBoth:844p = 2.2913e-50
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susIndexQuant_run: [0.3146 0.4850 0.6197]
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Narrow InterneuronssusIndexQuant_stat: [0.1403 0.2985 0.4698]nBoth: 480p =1.8159e-27
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susIndexQuant_run: [0.3042 0.4510 0.5957]
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Wide InternueronssusIndexQuant_stat: [0.2153 0.3623 0.5013]nBoth: 483p = 1.1020e-29
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susIndexQuant_run: [0.3579 0.5023 0.6363]
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Visual areas (Fig S3)
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Response featuresProportions (Decay, Rise, Peak, Trough, Flat)Binomial GLMEs as above, separate for each speed
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VISp
statProp_onset: [0.1235 0.3019 0.4503 0.0620 0.0623]
# reliable responses (from n sesh)
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runProp_onset: [0.1233 0.4024 0.3467 0.0665 0.0611]
nStat: 3611 (13)
pVal_onset: [0.6773 7.2633e-11 2.5590e-08 0.5902 0.8318]
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statProp_offset: [0.1235 0.3019 0.4503 0.0620 0.0623]
nRun: 3698 (11)
pVal_offset: [0.1293 0.0073 0.0198 4.5861e-05 0.0154]
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runProp_offset: [0.1233 0.4024 0.3467 0.0665 0.0611]
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VISl
statProp_onset: [0.1463 0.2781 0.4113 0.0882 0.0760]
nStat: 3513 (11)
pVal_onset: [0.9149 1.7852e-10 1.5883e-07 3.0080e-06 0.9085]
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runProp_onset: [0.1437 0.4929 0.2557 0.0344 0.0732]
nRun: 1830 (8)
pVal_offset: [0.3187 0.1767 0.3108 1.0557e-07 0.9406]
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statProp_offset: [0.1463 0.2781 0.4113 0.0882 0.0760]
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runProp_offset: [0.1437 0.4929 0.2557 0.0344 0.0732]
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VISal
statProp_onset: [0.1261 0.3125 0.4060 0.0923 0.0631]
nStat: 1776 (11)
pVal_onset: [0.1202 0.1161 0.0243 0.9438 0.3464]
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runProp_onset: [0.1874 0.3248 0.3208 0.0829 0.0841]
nRun: 3485 (9)
pVal_offset: [3.6379e-04 0.2411 8.7358e-07 5.3875e-05 0.7041]
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statProp_offset: [0.1261 0.3125 0.4060 0.0923 0.0631]
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runProp_offset: [0.1874 0.3248 0.3208 0.0829 0.0841]
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VISrl
statProp_onset: [0.1581 0.3874 0.2940 0.0663 0.0942]
nStat: 1221 (11)
pVal_onset: [0.7756 0.0031 0.1617 0.0685 0.4392]
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runProp_onset: [0.1658 0.4413 0.2467 0.0503 0.0960]
nRun: 1532 (11)
pVal_offset: [0.0583 0.6608 0.0156 0.0028 0.1116]
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statProp_offset: [0.1581 0.3874 0.2940 0.0663 0.0942]
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runProp_offset: [0.1658 0.4413 0.2467 0.0503 0.0960]
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VISam
statProp_onset: [0.1267 0.3265 0.3840 0.0755 0.0873]
nStat: 2383 (14)
pVal_onset: [0.7754 6.9551e-04 0.0753 0.0438 0.3652]
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runProp_onset: [0.1271 0.4105 0.3235 0.0558 0.0832]nRun: 2597 (10)
pVal_offset: [0.6530 0.9734 0.0043 1.7540e-08 0.2023]
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statProp_offset: [0.1267 0.3265 0.3840 0.0755 0.0873]
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runProp_offset: [0.1271 0.4105 0.3235 0.0558 0.0832]
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VISpm
statProp_onset: [0.0826 0.2860 0.4818 0.0826 0.0670]
nStat: 1731 (9)
pVal_onset: [0.1504 0.0062 0.0160 0.7503 0.3942]
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runProp_onset: [0.1600 0.3754 0.2795 0.1018 0.0833]
nRun: 1356 (7)
pVal_offset: [0.6385 5.5162e-05 0.0125 2.2659e-16 0.8762]
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statProp_offset: [0.0826 0.2860 0.4818 0.0826 0.0670]
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runProp_offset: [0.1600 0.3754 0.2795 0.1018 0.0833]
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LGN
statProp_onset: [0.1851 0.2645 0.3521 0.1091 0.0893]
nStat: 605 (4)
pVal_onset: [0.7827 0.2583 0.0156 0.8497 0.8767]
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runProp_onset: [0.2261 0.3768 0.2283 0.0855 0.0832]
nRun: 889 (5)
pVal_offset: [0.8813 0.8005 0.0520 0.1396 8.1621e-04]
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statProp_offset: [0.1851 0.2645 0.3521 0.1091 0.0893]
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runProp_offset: [0.2261 0.3768 0.2283 0.0855 0.0832]
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LP
statProp_onset: [0.2238 0.2885 0.2489 0.0874 0.1515]
nStat: 1591 (12)
pVal_onset: [0.3870 0.0686 0.5577 0.9370 6.7671e-04]
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runProp_onset: [0.2047 0.4871 0.1647 0.0612 0.0824]
nRun: 850 (9)
pVal_offset: [0.0190 0.3285 0.1012 0.1127 0.0080]
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statProp_offset: [0.2238 0.2885 0.2489 0.0874 0.1515]
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runProp_offset: [0.2047 0.4871 0.1647 0.0612 0.0824]
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Pupil area (Fig S5)
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Sustainedness indexQuantiles: top = small pupil, bottom = big pupil# reliable responses
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0.2006 0.3288 0.4774nBoth = 1977p = 7.7341e-16
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0.2207 0.3637 0.5120
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Response features
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propSmallOn = 0.0843 0.1486 0.6492 0.0802 0.0378
pVal_onset = 0.0000 0.0020 0.0000 0.6480 0.8409
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propBigOn = 0.1216 0.1739 0.5895 0.0762 0.0389
pVal_offset = 0.0138 0.4145 0.3429 0.0000 0.0007
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propSmallOff = 0.4717 0.0739 0.0688 0.1246 0.2610
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propBigOff = 0.4363 0.0800 0.0758 0.1874 0.2205
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Compare big pupil to locomotion
pVal_onset = 0.0000 0.0000 0.0000 0.0000 0.9940
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pVal_offset = 0.0000 0.6879 0.0084 0.0000 0.0099
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Compare small pupil to locomotion
pVal_onset = 0.3631 0.0000 0.0000 0.0000 0.8324
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pVal_offset = 0.0000 0.6610 0.0005 0.0000 0.0000