1. System requirements
- Installation of MATLAB
- tested on MATLAB R2023a

2. Installation Guide
- Place the content of this folder into your MATLAB working directory
- Add the included functions from the published TOM and AV3 packages into your MATLAB path (or copy them directly into your working directory)

3. Demo/Instructions for use
- run the script analyze_neighbors.m in your MATLAB working directory
- running the script should take less than 2 minutes
- this will reproduce the clustering as shown in ED Fig. 11 and generate an EM density volume reflecting the preferred orientation.