{"text_format":"3","workbook":"xls","n_sheets":2,"sheets":["APOE_microglia_ATAC_QC","APOE_microglia_RNA_QC"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"APOE_microglia_ATAC_QC","index":0,"n_rows":27,"n_cols":37,"rows_kept":27,"flags":["formulas_cached_only"]}
["sample","group","initial_read_counts","reads_aligned","reads_aligned_percentage","reads_aligned_in_pairs","mean_aligned_read_length","final_reads_post_filtering","frip","notes",{"$nulls":26},"FRiP"]
["E3_1","APOE3",23457244,20250876,0.86331,20250876,48.787903,10103010,0.768371307,{"$nulls":27},0.768371307]
["E3_2","APOE3",23949188,21687342,0.905556,21687342,52.550879,11070082,0.700086594,{"$nulls":27},0.700086594]
["E3_3","APOE3",23073193,20847257,0.903527,20847257,53.663489,10577821,0.672795465,{"$nulls":27},0.672795465]
["E3_4","APOE3",27319444,23897348,0.874738,23897348,51.095212,12324994,0.785583425,{"$nulls":27},0.785583425]
["E3_5","APOE3",27314817,23422741,0.85751,23422741,48.806804,12233059,0.736649353,{"$nulls":27},0.736649353]
["KO_1","APOE-KO",16651686,14790202,0.88821,14790202,50.595481,8501126,0.709143,"removed from downstream analyses due to high APOE expression",{"$nulls":26},0.721984759]
["KO_2","APOE-KO",27559608,25255966,0.916412,25255966,51.333205,13577042,0.7221286,"removed from downstream analyses due to high APOE expression",{"$nulls":26},0.783058715]
["KO_3","APOE-KO",21434706,18514328,0.863755,18514328,47.412381,10166716,0.721984759,{"$nulls":27},0.707847503]
["KO_4","APOE-KO",48906,43558,0.890647,43558,49.188566,null,null,"removed from downstream analyses due to low QC",{"$nulls":26},0.79274039]
["KO_5","APOE-KO",27725730,22997664,0.82947,22997664,46.949557,11895532,0.783058715,{"$nulls":27},0.720921004]
["E4_1","APOE4",25824610,23479098,0.909175,23479098,51.164925,12669380,0.707847503,{"$nulls":27},0.773981664]
["E4_2","APOE4",11329954,10283764,0.907662,10283764,51.67444,5597188,0.79274039,{"$nulls":27},0.660382949]
["E4_3","APOE4",16408522,13221368,0.805762,13221368,46.042465,7423726,0.720921004,{"$nulls":27},0.692338229]
["E4_4","APOE4",24064,18282,0.759724,18282,45.941323,null,null,"removed from downstream analyses due to low QC",{"$nulls":26},0.793734239]
["E4_5","APOE4",16176674,10710618,0.662103,10710618,37.921539,5493864,0.773981664,{"$nulls":27},0.721939674]
["E2_1","APOE2",27072574,24232514,0.895095,24232514,50.71696,13505806,0.660382949,{"$nulls":27},0.710176093]
["E2_2","APOE2",22259354,20027990,0.899756,20027990,51.923915,11524568,0.692338229]
["E2_3","APOE2",33490258,25785440,0.769939,25785440,44.802032,13793152,0.793734239]
["E2_4","APOE2",31523404,23667334,0.750786,23667334,43.707836,12438398,0.721939674]
["E2_5","APOE2",29000945,22523651,0.776652,22523651,44.153316,12600189,0.710176093]
[]
[]
[]
[]
[]
[{"$nulls":11}," "]

{"sheet":"APOE_microglia_RNA_QC","index":1,"n_rows":21,"n_cols":8,"rows_kept":21,"flags":["formulas_cached_only"]}
["sample","group","initial_read_counts","reads_aligned","reads_aligned_percentage","reads_aligned_in_pairs","final_reads_post_filtering","notes"]
["E3_1","APOE3",{"$nulls":5},"discarded before sequencing due to low RNA quality"]
["E3_2","APOE3",28566708,28566708,100,28566708,28566708]
["E3_3","APOE3",21260254,21260254,100,21260254,21260254]
["E3_4","APOE3",31443164,31443164,100,31443164,31443164]
["E3_5","APOE3",20309164,20309164,100,20309164,20309164]
["KO_1","APOE-KO",29246488,29246488,100,29246488,29246488,"removed from downstream analyses due to high APOE expression"]
["KO_2","APOE-KO",31409950,31409950,100,31409950,31409950,"removed from downstream analyses due to high APOE expression"]
["KO_3","APOE-KO",13450197,13450197,100,13450197,13450197]
["KO_4","APOE-KO",35863504,35863504,100,35863504,35863504]
["KO_5","APOE-KO",23740772,23740772,100,23740772,23740772]
["E4_1","APOE4",33244666,33244666,100,33244666,33244666]
["E4_2","APOE4",22421974,22421974,100,22421974,22421974]
["E4_3","APOE4",37415870,37415870,100,37415870,37415870]
["E4_4","APOE4",17674234,17674234,100,17674234,17674234]
["E4_5","APOE4",28262482,28262482,100,28262482,28262482]
["E2_1","APOE2",31444836,31444836,100,31444836,31444836]
["E2_2","APOE2",29183818,29183818,100,29183818,29183818]
["E2_3","APOE2",29140144,29140144,100,29140144,29140144]
["E2_4","APOE2",26666920,26666920,100,26666920,26666920]
["E2_5","APOE2",23856702,23856702,100,23856702,23856702]