snp	variant_id_dbSNPv142	chr	pos_hg19	BED_hg19	BED_hg38	REF	ALT	maf	tss_distance	gene	gene_name	gene_type	num_var	beta_shape1	beta_shape2	true_df	pval_true_df	ma_samples	ma_count	ref_factor	pval_nominal	slope	slope_se	pval_perm	pval_beta	qval	pval_nominal_threshold	eqtl	GWAS_index_snp	R2_EUR	R2_AFR	R2_SAS	R2_EAS	Sign_EUR	Sign_AFR	Sign_SAS	Sign_EAS	GWAS_index_snp_slope	best_trait	BarcUVa_snps	GWAS_snps	shared_snps	eSNP_in_GWAS	GWAS_index_SNP_in_eQTL	H1_hypothesis_eQTL	H2_hypothesis_GWAS	H3_hypothesis_different	H4_hypothesis_shared	number_snps_credible_set	H4_snp	coloc_likely_hypothesis
chr10:48162047:A:G	rs2438988	10	49370090	chr10:49370090-49370090	chr10:48162047	A	G	0.353933	97755	ENSG00000126542.10	PTPN20CP	pseudogene	3091	1.01544	202.518	351.632	1.06e-11	257	315	-1	9.5e-14	0.468266	0.0607816	1e-04	1.57e-09	2.28e-09	0.000587927	ENSG00000126542-chr10:48162047:A:G	chr10:48182406:G:T	0.673	0.325	0.883	0.906	+	+	+	+	-0.0799	CD	3088	933	75	TRUE	TRUE	0.000130451962405882	6.80254141677521e-09	0.0364131951704957	0.963456346040816	3	chr10:48162047:A:G	PP.H4.abf
chr10:48162047:A:G	rs2438988	10	49370090	chr10:49370090-49370090	chr10:48162047	A	G	0.353933	113848	ENSG00000243899.3	BMS1P7	pseudogene	3042	1.02205	217.318	358.422	7.96e-11	257	315	-1	1.72e-12	0.460405	0.0633046	1e-04	1.16e-08	1.56e-08	0.000557729	ENSG00000243899-chr10:48162047:A:G	chr10:48182406:G:T	0.673	0.325	0.883	0.906	+	+	+	+	-0.0799	CD	3039	933	75	TRUE	TRUE	6.46615585335482e-05	5.92005487329388e-08	0.0175442182385334	0.982391060795763	5	chr10:48162047:A:G	PP.H4.abf
chr10:58241020:A:G	rs2590323	10	60000781	chr10:60000781-60000781	chr10:58241020	A	G	0.220225	-28038	ENSG00000122873.7	CISD1	protein_coding	5251	1.03988	177.933	356.526	1.88e-18	171	196	1	1.48e-21	-0.4169	0.0413576	1e-04	7.93e-17	1.98e-16	0.000713919	ENSG00000122873-chr10:58241020:A:G	chr10:58243611:T:C	1	1	0.979	1	+	+	+	+	-0.0827	IBD	5250	2149	768	TRUE	FALSE	3.84846886802602e-09	1.30548057696947e-19	0.174961813993278	0.825038182158254	169	chr10:58248458:A:G	PP.H4.abf
chr10:73841895:A:T	rs2243610	10	75601653	chr10:75601653-75601653	chr10:73841895	A	T	0.22809	138159	ENSG00000272140.2	RP11-574K11.29	lincRNA	2374	1.02268	44.9183	348.171	9.14e-06	182	203	1	1.03e-06	-0.336692	0.0679104	1e-04	0.000340641	0.000275813	0.00269945	ENSG00000272140-chr10:73841895:A:T	chr10:73903978:A:G	0.629	NA	0.383	0.353	-	NA	-	-	0.1157	CD	2374	1752	330	TRUE	TRUE	3.9026539951e-12	0.00593119612211375	0.0958374899434812	0.898231313930265	6	chr10:73837788:C:G	PP.H4.abf
chr10:73912717:A:G	rs2227560	10	75672475	chr10:75672475-75672475	chr10:73912717	A	G	0.234831	127134	ENSG00000214655.6	ZSWIM8	protein_coding	2526	1.06098	52.4418	345.327	6.9e-05	181	209	-1	1.08e-05	-0.136869	0.0307326	0.00249975	0.00249767	0.00176224	0.00255322	ENSG00000214655-chr10:73912717:A:G	chr10:73903978:A:G	0.889	0.746	0.734	0.663	+	+	+	+	0.1157	CD	2526	1752	330	TRUE	TRUE	1.95565733625946e-12	0.0161880113360353	0.0475389243764663	0.936273064284891	14	chr10:73903978:A:G	PP.H4.abf
chr11:114516108:C:T	rs561722	11	114386830	chr11:114386830-114386830	chr11:114516108	C	T	0.335955	-54484	ENSG00000137634.5	NXPE4	protein_coding	4527	1.03198	337.505	361.523	4.5e-15	241	299	1	2.43e-17	0.436253	0.0492928	1e-04	6.28e-13	1.19e-12	0.000368757	ENSG00000137634-chr11:114516108:C:T	chr11:114516108:C:T	1	1	1	1	+	+	+	+	-0.0922	UC	4524	1355	433	TRUE	TRUE	3.38428966112324e-11	2.45374338184338e-14	0.0160446266308044	0.98395537333533	15	chr11:114516108:C:T	PP.H4.abf
chr11:114522930:C:T	rs10891692	11	114393652	chr11:114393652-114393652	chr11:114522930	C	T	0.337079	-155457	ENSG00000204361.7	NXPE2	protein_coding	4593	1.07192	332.376	355.516	1.83e-06	242	300	1	2.01e-07	0.233509	0.0441718	0.00029997	0.000346001	0.000279733	0.000414641	ENSG00000204361-chr11:114522930:C:T	chr11:114516108:C:T	0.99	0.705	0.981	0.987	+	+	+	+	-0.0922	UC	4589	1355	433	TRUE	TRUE	3.9752220572702e-11	0.000220585552226795	0.0190211924279607	0.980758221979622	16	chr11:114516108:C:T	PP.H4.abf
chr11:114542724:G:T	rs534912	11	114413446	chr11:114413446-114413446	chr11:114542724	G	T	0.339326	21008	ENSG00000095110.3	NXPE1	protein_coding	4519	1.03533	332.842	359.895	1.09e-75	244	302	1	1.93e-88	-0.865483	0.0336504	1e-04	9.86e-76	3.57e-74	0.000377227	ENSG00000095110-chr11:114542724:G:T	chr11:114516108:C:T	0.989	0.776	0.953	0.96	+	+	+	+	-0.0922	UC	4516	1355	433	TRUE	TRUE	3.94907132278353e-11	3.08569621700037e-136	0.0188892584034694	0.98111074155705	7	chr11:114535786:T:A	PP.H4.abf
chr11:114542724:G:T	rs534912	11	114413446	chr11:114413446-114413446	chr11:114542724	G	T	0.339326	103337	ENSG00000076043.5	REXO2	protein_coding	4603	1.05197	339.773	359.823	2.02e-16	244	302	1	5.4e-19	0.425436	0.0455274	1e-04	1.39e-14	2.99e-14	0.000385782	ENSG00000076043-chr11:114542724:G:T	chr11:114516108:C:T	0.989	0.776	0.953	0.96	+	+	+	+	-0.0922	UC	4600	1355	433	TRUE	TRUE	3.73873475818502e-11	2.661130344365e-16	0.017829857726664	0.982170142235947	13	chr11:114535786:T:A	PP.H4.abf
chr11:17276919:G:C	rs214086	11	17298466	chr11:17298466-17298466	chr11:17276919	G	C	0.446067	-74808	ENSG00000188211.4	NCR3LG1	protein_coding	4080	1.03739	221.507	357.876	9.44e-07	300	397	1	1.01e-07	-0.219856	0.0405734	1e-04	0.000149845	0.000127686	0.000569824	ENSG00000188211-chr11:17276919:G:C	chr11:17311651:A:G	0.213	NA	NA	NA	-	NA	NA	NA	0.0616	IBD	4077	2351	631	TRUE	TRUE	0.00370111331809264	0.00566680316115574	0.371990215408109	0.618585579907439	19	chr11:17401408:C:A	PP.H4.abf
chr11:64350711:A:C	rs1199047	11	64118183	chr11:64118183-64118183	chr11:64350711	A	C	0.295506	-8438	ENSG00000162302.8	RPS6KA4	protein_coding	2574	1.05153	129.555	345.409	1.39e-05	232	263	1	1.55e-06	0.136655	0.0280401	0.00039996	0.00126794	0.000939214	0.00101018	ENSG00000162302-chr11:64350711:A:C	chr11:64338819:T:C	0.833	NA	0.324	0.504	+	NA	+	+	-0.0951	CD	2573	988	180	TRUE	TRUE	6.05666054278435e-06	0.030155740638602	0.156493941291655	0.813343100349908	24	chr11:64338819:T:C	PP.H4.abf
chr11:65876556:T:C	rs583887	11	65644027	chr11:65644027-65644027	chr11:65876556	T	C	0.208989	-3254	ENSG00000172543.3	CTSW	protein_coding	2973	1.05661	141.329	342.277	3.43e-72	163	186	-1	1.37e-88	1.17248	0.0455259	1e-04	5.63e-74	1.9e-72	0.000938112	ENSG00000172543-chr11:65876556:T:C	chr11:65873091:G:A	0.447	0.898	0.602	0.623	+	+	+	+	-0.0757	CD	2972	696	192	TRUE	TRUE	0.00134518172840447	1.53701208340375e-130	0.142895525768187	0.855759292503397	10	chr11:65876556:T:C	PP.H4.abf
chr11:65889093:C:T	rs2231884	11	65656564	chr11:65656564-65656564	chr11:65889093	C	T	0.176404	5351	ENSG00000172500.8	FIBP	protein_coding	2988	1.04946	152.34	350.818	9.55e-10	141	157	1	1.95e-11	0.332292	0.0481808	1e-04	6.53e-08	8.19e-08	0.00085465	ENSG00000172500-chr11:65889093:C:T	chr11:65873091:G:A	0.366	NA	0.502	0.398	-	NA	-	-	-0.0757	CD	2987	696	192	TRUE	TRUE	0.0023781970421384	1.5932023222208e-06	0.253399047167759	0.744221147679069	8	chr11:65879634:A:G	PP.H4.abf
chr12:119605844:G:A	rs76548188	12	120043649	chr12:120043649-120043649	chr12:119605844	G	A	0.0337079	-61910	ENSG00000111725.6	PRKAB1	protein_coding	4618	1.03908	313.228	360.73	1.51e-25	30	30	1	1.31e-29	1.44423	0.118186	1e-04	6.25e-24	2.39e-23	0.000404789	ENSG00000111725-chr12:119605844:G:A	chr12:119709120:G:A	0.669	0.52	0.68	NA	+	+	+	NA	0.1102	IBD	4618	776	232	TRUE	TRUE	8.13792976948565e-06	8.85065400543026e-21	0.000382731890808419	0.999609130179422	1	chr12:119709120:G:A	PP.H4.abf
chr12:6393195:T:C	rs11064159	12	6502361	chr12:6502361-6502361	chr12:6393195	T	C	0.310112	18149	ENSG00000111321.6	LTBR	protein_coding	4243	1.0355	329.166	364.15	6.12e-48	241	276	-1	2.79e-55	-0.650263	0.035628	1e-04	5.14e-47	5.91e-46	0.000381609	ENSG00000111321-chr12:6393195:T:C	chr12:6402491:G:A	0.268	NA	0.359	0.389	+	NA	+	+	0.0914	CD	4240	250	31	TRUE	TRUE	4.44067184268083e-06	1.97910099707848e-66	0.114776257494749	0.885219301833409	4	chr12:6393195:T:C	PP.H4.abf
chr12:6410671:A:G	rs7300170	12	6519837	chr12:6519837-6519837	chr12:6410671	A	G	0.34382	16765	ENSG00000256433.1	RP1-102E24.8	lincRNA	4253	1.05714	349.412	369.363	2.61e-06	270	306	-1	5.07e-07	-0.409819	0.0803147	0.00029997	0.000595703	0.000466046	0.000380105	ENSG00000256433-chr12:6410671:A:G	chr12:6402491:G:A	0.322	NA	0.337	0.393	+	NA	+	+	0.0914	CD	4250	250	31	TRUE	TRUE	3.78608999852519e-07	0.000951779361461301	0.00887105091610139	0.990176754571107	1	chr12:6402491:G:A	PP.H4.abf
chr12:69338325:T:C	rs4761234	12	69732105	chr12:69732105-69732105	chr12:69338325	T	C	0.489888	-10017	ENSG00000090382.2	LYZ	protein_coding	5762	1.04136	367.976	358.515	1.05e-17	334	436	-1	1.44e-20	-0.482251	0.0492054	1e-04	9.59e-16	2.23e-15	0.000346626	ENSG00000090382-chr12:69338325:T:C	chr12:69348988:AT:A	NA	0.275	NA	NA	NA	-	NA	NA	-0.0801	IBD	5757	1437	478	TRUE	FALSE	0.0341310133136764	1.02925605462661e-15	0.455308809481016	0.510560177205306	20	chr12:69338325:T:C	PP.H4.abf
chr12:69370608:A:G	rs2291005	12	69764388	chr12:69764388-69764388	chr12:69370608	A	G	0.476404	10904	ENSG00000127337.2	YEATS4	protein_coding	5762	1.07401	348.505	353.085	9.33e-24	327	424	1	4.43e-28	-0.475686	0.0402134	1e-04	9.58e-23	3.44e-22	0.000397505	ENSG00000127337-chr12:69370608:A:G	chr12:69348988:AT:A	0.221	NA	NA	NA	-	NA	NA	NA	-0.0801	IBD	5757	1437	478	TRUE	FALSE	0.0257716772935879	2.44318196104048e-26	0.343549835317964	0.630678487388445	23	chr12:69370608:A:G	PP.H4.abf
chr13:42047711:C:T	rs2324850	13	42621847	chr13:42621847-42621847	chr13:42047711	C	T	0.485393	7670	ENSG00000102780.12	DGKH	protein_coding	4630	1.05121	266.653	352.817	4.06e-09	321	432	1	1.25e-10	-0.174278	0.0264113	1e-04	5.23e-07	5.98e-07	0.00049058	ENSG00000102780-chr13:42047711:C:T	chr13:42037531:C:A	0.531	NA	0.617	0.974	+	NA	+	+	-0.0903	CD	4628	4587	1467	TRUE	TRUE	2.40535186255793e-06	1.77722118269256e-06	0.297534199426361	0.702461617986261	2	chr13:42037531:C:A	PP.H4.abf
chr14:64977536:A:G	rs4902354	14	65444254	chr14:65444254-65444254	chr14:64977536	A	G	0.219101	63050	ENSG00000257365.3	FNTB	protein_coding	4861	1.02983	205.702	347.552	1.64e-11	175	195	1	1.15e-13	-0.430581	0.0560974	1e-04	1.87e-09	2.68e-09	0.000601527	ENSG00000257365-chr14:64977536:A:G	chr14:65142694:C:G	0.319	NA	NA	0.253	+	NA	NA	+	0.0764	UC	4858	816	252	FALSE	TRUE	0.000242727263206223	5.66561281716312e-06	0.172702837754994	0.82704876144413	28	chr14:65070841:T:A	PP.H4.abf
chr15:100927195:G:A	rs10902585	15	101467400	chr15:101467400-101467400	chr15:100927195	G	A	0.476404	33454	ENSG00000259583.1	RP11-66B24.4	antisense	5841	1.05688	404.124	358.257	5.82e-05	325	424	-1	1.28e-05	-0.210326	0.0476299	0.0161984	0.0183084	0.0108822	0.000328441	ENSG00000259583-chr15:100927195:G:A	chr15:100948377:T:C	0.782	NA	0.668	0.835	+	NA	+	+	0.0712	CD	5841	530	205	TRUE	TRUE	0.00216814574793435	0.0771251456542172	0.0439331604838059	0.873041507700515	2	chr15:100948377:T:C	PP.H4.abf
chr16:28554837:G:T	rs3859172	16	28566158	chr16:28566158-28566158	chr16:28554837	G	T	0.366292	17551	ENSG00000176046.7	NUPR1	protein_coding	2492	1.03673	122.914	352.096	4.09e-06	265	326	1	4.57e-07	-0.22769	0.0444379	0.00069993	0.000374728	0.0003015	0.00102483	ENSG00000176046-chr16:28554837:G:T	chr16:28519966:A:G	0.83	NA	0.572	NA	+	NA	+	NA	0.0876	IBD	2492	3571	542	TRUE	TRUE	1.96713584926722e-15	0.00051420935650987	0.0881438021852903	0.911341988458196	25	chr16:28523682:A:G	PP.H4.abf
chr16:28620209:A:T	rs62031607	16	28631530	chr16:28631530-28631530	chr16:28620209	A	T	0.323595	66293	ENSG00000176476.4	CCDC101	protein_coding	2480	1.05336	130.343	356.021	1.23e-07	246	288	1	8.47e-09	-0.289944	0.0493316	1e-04	8.69e-06	8.65e-06	0.00100877	ENSG00000176476-chr16:28620209:A:T	chr16:28519966:A:G	0.748	NA	0.408	0.415	+	NA	+	+	0.0876	IBD	2480	3571	542	TRUE	TRUE	5.87869419582196e-15	2.77897676608235e-05	0.265402595928852	0.734569614303485	30	chr16:28487970:A:G	PP.H4.abf
chr16:28882250:T:C	rs7498555	16	28893571	chr16:28893571-28893571	chr16:28882250	T	C	0.340449	425877	ENSG00000233232.2	NPIPB7	protein_coding	2539	1.02311	129.904	357.824	1.41e-06	248	303	1	1.62e-07	-0.331265	0.0621745	0.00019998	0.000148953	0.000127026	0.000935469	ENSG00000233232-chr16:28882250:T:C	chr16:28519966:A:G	0.628	0.689	0.296	0.345	+	+	+	+	0.0876	IBD	2539	3571	542	TRUE	TRUE	6.9406646602198e-15	0.00104201608067487	0.313528707081751	0.685429276837564	69	chr16:28846324:A:G	PP.H4.abf
chr16:28922147:C:T	rs7185232	16	28933468	chr16:28933468-28933468	chr16:28922147	C	T	0.319101	427497	ENSG00000184730.6	APOBR	protein_coding	2508	1.03249	125.906	354.61	0.000189154	232	284	-1	4.64e-05	-0.15458	0.0375589	0.0189981	0.020553	0.0120676	0.000989436	ENSG00000184730-chr16:28922147:C:T	chr16:28519966:A:G	0.5	NA	0.232	NA	-	NA	-	NA	0.0876	IBD	2508	3571	542	TRUE	TRUE	3.96712842329065e-15	0.0429235895385226	0.178819503880266	0.77825690658121	27	chr16:28523682:A:G	PP.H4.abf
chr16:30108987:A:G	rs56369689	16	30120308	chr16:30120308-30120308	chr16:30108987	A	G	0.377528	-84901	ENSG00000132207.13	SLX1A	protein_coding	1444	1.04323	70.621	346.223	0.00028723	277	336	1	6.22e-05	0.263964	0.0652553	0.0146985	0.0166529	0.0100017	0.00181312	ENSG00000132207-chr16:30108987:A:G	chr16:30328432:G:A	0.248	NA	NA	NA	-	NA	NA	NA	0.087	UC	1444	4877	645	TRUE	FALSE	4.21010844258318e-07	0.119588752418702	0.057987415678928	0.822422554773516	5	chr16:30312059:G:A	PP.H4.abf
chr16:30133058:C:G	rs6565175	16	30144379	chr16:30144379-30144379	chr16:30133058	C	G	0.459551	-89880	ENSG00000198064.9	RP11-347C12.1	protein_coding	1379	1.03434	68.8226	347.511	0.000123806	309	409	1	2.33e-05	-0.2243	0.0524279	0.00629937	0.00709879	0.00461583	0.00181796	ENSG00000198064-chr16:30133058:C:G	chr16:30328432:G:A	0.337	NA	NA	NA	-	NA	NA	NA	0.087	UC	1379	4877	645	TRUE	FALSE	4.02072743545856e-07	0.0308412721528244	0.0552505198365917	0.913907585149781	4	chr16:30312059:G:A	PP.H4.abf
chr16:30141147:T:C	rs4787494	16	30152468	chr16:30152468-30152468	chr16:30141147	T	C	0.424719	36336	ENSG00000102886.10	GDPD3	protein_coding	1609	1.04717	70.5261	346.285	2.37e-05	299	378	-1	3.05e-06	0.166484	0.0351905	0.0009999	0.00120791	0.000898021	0.00183405	ENSG00000102886-chr16:30141147:T:C	chr16:30328432:G:A	0.706	NA	0.44	NA	-	NA	-	NA	0.087	UC	1609	4877	645	TRUE	FALSE	2.1644686575204e-06	0.041583710645339	0.30169190721079	0.656721919983643	4	chr16:30312059:G:A	PP.H4.abf
chr16:30308986:G:T	rs4471699	16	30320307	chr16:30320307-30320307	chr16:30308986	G	T	0.401124	883185	ENSG00000254634.3	RP11-231C14.3	pseudogene	1644	1.03656	65.2155	350.726	9.06e-07	285	357	1	7.14e-08	-0.267629	0.0487932	1e-04	4.07e-05	3.73e-05	0.00192954	ENSG00000254634-chr16:30308986:G:T	chr16:30328432:G:A	0.995	1	1	0.99	+	+	+	+	0.087	UC	1644	4877	552	TRUE	FALSE	1.0505482124653e-07	4.60685232992254e-05	0.00521608125499363	0.994737744387645	4	chr16:30312059:G:A	PP.H4.abf
chr16:30316996:T:C	rs11644392	16	30328317	chr16:30328317-30328317	chr16:30316996	T	C	0.403371	873765	ENSG00000261740.1	RP11-345J4.5	protein_coding	1656	1.01354	71.9024	359.38	1.07e-18	285	359	1	1.11e-21	-0.626202	0.0619042	1e-04	4.65e-17	1.18e-16	0.00164646	ENSG00000261740-chr16:30316996:T:C	chr16:30328432:G:A	0.996	1	1	0.99	+	+	+	+	0.087	UC	1656	4877	564	TRUE	FALSE	8.9129488484651e-08	2.78287267498058e-18	0.00427368012199677	0.995726230748515	4	chr16:30312059:G:A	PP.H4.abf
chr16:30324709:A:T	rs7195216	16	30336030	chr16:30336030-30336030	chr16:30324709	A	T	0.407865	101799	ENSG00000183604.10	RP11-347C12.2	pseudogene	1379	1.04666	68.3162	344.987	1.35e-109	290	363	1	1.19e-133	1.22655	0.0333614	1e-04	9.15e-113	1.5e-110	0.00189082	ENSG00000183604-chr16:30324709:A:T	chr16:30328432:G:A	0.994	NA	1	0.99	+	NA	+	+	0.087	UC	1379	4877	645	TRUE	FALSE	8.15579974483079e-08	9.03960024737928e-280	0.0104030137656005	0.989596904676455	1	chr16:30324709:A:T	PP.H4.abf
chr16:30324709:A:T	rs7195216	16	30336030	chr16:30336030-30336030	chr16:30324709	A	T	0.407865	841019	ENSG00000169203.12	RP11-231C14.4	protein_coding	1683	1.01806	70.9688	352.951	2.8e-15	290	363	1	5.69e-18	0.437307	0.0483708	1e-04	1.16e-13	2.34e-13	0.00168856	ENSG00000169203-chr16:30324709:A:T	chr16:30328432:G:A	0.994	NA	1	0.99	+	NA	+	+	0.087	UC	1683	4877	605	TRUE	FALSE	1.13867331183246e-07	5.24470704241038e-15	0.0139187332893613	0.986081152843305	4	chr16:30312059:G:A	PP.H4.abf
chr16:30420782:C:T	rs4465620	16	30432103	chr16:30432103-30432103	chr16:30420782	C	T	0.317978	70015	ENSG00000169217.4	CD2BP2	protein_coding	1336	1.04586	61.7097	345.214	1.81e-05	239	283	-1	2.12e-06	-0.207498	0.0431563	0.00059994	0.00079912	0.0006118	0.00208867	ENSG00000169217-chr16:30420782:C:T	chr16:30328432:G:A	0.541	NA	0.731	0.499	-	NA	-	-	0.087	UC	1336	4877	645	TRUE	FALSE	2.15799040558463e-06	0.0171256928634618	0.300761589631876	0.68211043691398	4	chr16:30324709:A:T	PP.H4.abf
chr16:68574608:T:C	rs1170439	16	68608511	chr16:68608511-68608511	chr16:68574608	T	C	0.221348	44517	ENSG00000184939.11	ZFP90	protein_coding	3618	1.02113	213.272	360.451	8.58e-09	175	197	-1	4.68e-10	0.325667	0.0510497	1e-04	1.37e-06	1.5e-06	0.000566908	ENSG00000184939-chr16:68574608:T:C	chr16:68626662:C:T	0.86	NA	0.885	0.389	+	NA	+	+	0.0884	UC	3617	1380	417	TRUE	TRUE	8.04351375349131e-05	1.64569938225948e-06	0.181630070853338	0.818287847584214	98	chr16:68553781:G:A	PP.H4.abf
chr16:68786815:A:G	rs9928796	16	68820718	chr16:68820718-68820718	chr16:68786815	A	G	0.274157	49589	ENSG00000039068.14	CDH1	protein_coding	3798	1.05011	209.742	355.29	6.61e-07	204	244	1	5.96e-08	0.188477	0.0341506	0.00019998	8.69e-05	7.63e-05	0.000621884	ENSG00000039068-chr16:68786815:A:G	chr16:68626662:C:T	0.43	NA	0.341	0.207	-	NA	-	-	0.0884	UC	3797	1380	417	FALSE	TRUE	0.00014671578436835	0.0346671709613355	0.332157541609695	0.633013288094318	74	chr16:68646377:G:C	PP.H4.abf
chr16:75417563:G:A	rs11149831	16	75451461	chr16:75451461-75451461	chr16:75417563	G	A	0.331461	-40690	ENSG00000261476.1	RP11-77K12.3	sense_intronic	5333	1.04947	227.914	351.066	1.39e-07	247	295	-1	7.72e-09	0.338454	0.0574239	1e-04	1.86e-05	1.78e-05	0.000571383	ENSG00000261476-chr16:75417563:G:A	chr16:75463237:C:T	0.818	0.243	0.642	0.856	+	+	+	+	-0.0515	IBD	5333	2187	560	TRUE	TRUE	0.00107701514576806	2.72498040846741e-05	0.210403269542452	0.788492326541803	140	chr16:75463237:C:T	PP.H4.abf
chr16:75463442:G:A	rs12448829	16	75497340	chr16:75497340-75497340	chr16:75463442	G	A	0.340449	20387	ENSG00000166822.8	TMEM170A	protein_coding	5308	1.07256	211.471	343.297	1.49e-41	255	303	-1	1.09e-50	0.649724	0.0377438	1e-04	4.89e-42	4.69e-41	0.00065262	ENSG00000166822-chr16:75463442:G:A	chr16:75463237:C:T	0.857	NA	0.697	0.993	+	NA	+	+	-0.0515	IBD	5308	2187	560	TRUE	TRUE	0.000954898990997154	2.0226393589808e-58	0.186433409042307	0.812611691966686	5	chr16:75463009:T:C	PP.H4.abf
chr16:85976134:T:C	rs16940186	16	86009740	chr16:86009740-86009740	chr16:85976134	T	C	0.18764	77330	ENSG00000140968.6	IRF8	protein_coding	6571	1.08169	699.007	365.294	6.77e-20	148	167	1	9.68e-23	0.446783	0.0429193	1e-04	2.12e-18	5.83e-18	0.000201985	ENSG00000140968-chr16:85976134:T:C	chr16:85980635:T:C	0.858	NA	0.866	0.866	+	NA	+	+	0.124	IBD	6567	467	184	TRUE	TRUE	7.85378146310614e-20	1.60756089959767e-18	0.363629832690869	0.636370167309136	2	chr16:85980635:T:C	PP.H4.abf
chr17:1416819:C:A	rs9897348	17	1320113	chr17:1320113-1320113	chr17:1416819	C	A	0.380899	-3871	ENSG00000167193.7	CRK	protein_coding	4201	1.0409	279.527	358.937	6.69e-21	275	339	-1	2.7e-24	-0.399451	0.0368724	1e-04	3.46e-19	9.98e-19	0.000455729	ENSG00000167193-chr17:1416819:C:A	chr17:1453285:C:A	0.824	0.421	0.751	0.541	+	+	+	+	0.0714	CD	4194	616	96	TRUE	TRUE	0.00266214450983013	4.04173459470927e-21	0.181233680991161	0.81610417449901	3	chr17:1416819:C:A	PP.H4.abf
chr17:42393752:T:C	rs11079043	17	40545770	chr17:40545770-40545770	chr17:42393752	T	C	0.269663	458881	ENSG00000204815.4	TTC25	processed_transcript	3987	1.04433	150.068	355.681	0.000553877	207	240	-1	0.000168661	0.279584	0.0736545	0.0660934	0.0700271	0.0348373	0.000856218	ENSG00000204815-chr17:42393752:T:C	chr17:42345810:C:T	0.961	0.339	0.932	0.983	-	-	-	-	-0.1332	IBD	3987	4490	911	TRUE	TRUE	5.62880815031083e-35	0.187334319306655	0.0670057773996096	0.745659903293733	20	chr17:42345810:C:T	PP.H4.abf
chr17:59832902:T:C	rs1295925	17	57910263	chr17:57910263-57910263	chr17:59832902	T	C	0.305618	-119339	ENSG00000189050.10	RNFT1	protein_coding	2144	1.03662	72.1525	346.955	9.58e-14	225	272	-1	2.15e-16	0.397388	0.0464327	1e-04	2.66e-12	4.8e-12	0.00174451	ENSG00000189050-chr17:59832902:T:C	chr17:59886176:A:G	0.393	NA	0.475	0.551	-	NA	-	-	0.0652	IBD	2144	2775	609	TRUE	TRUE	1.75902268016299e-07	4.71675280850792e-12	0.308219061458618	0.691780762634397	6	chr17:59832902:T:C	PP.H4.abf
chr17:72637486:C:T	rs112592783	17	70633625	chr17:70633625-70633625	chr17:72637486	C	T	0.152809	314360	ENSG00000227036.2	LINC00511	lincRNA	4594	1.05623	391.295	362.615	0.000141457	123	136	1	4.03e-05	-0.301366	0.0726243	0.0420958	0.044613	0.023788	0.000338648	ENSG00000227036-chr17:72637486:C:T	chr17:72643045:G:A	0.755	NA	0.957	0.906	+	NA	+	+	-0.1092	IBD	4594	367	146	TRUE	TRUE	3.49269833460528e-09	0.0405211988336278	0.00980852227752668	0.949670262240749	1	chr17:72643045:G:A	PP.H4.abf
chr17:78681399:A:G	rs7215260	17	76677481	chr17:76677481-76677481	chr17:78681399	A	G	0.466292	7350	ENSG00000108669.12	CYTH1	protein_coding	4573	1.05179	397.673	361.616	5.23e-11	314	415	1	1.32e-12	-0.311043	0.0425329	1e-04	8.14e-09	1.11e-08	0.000329475	ENSG00000108669-chr17:78681399:A:G	chr17:78741036:A:G	0.226	NA	NA	NA	+	NA	NA	NA	0.0677	UC	4568	1301	259	TRUE	TRUE	0.0215700102766077	9.21586289970503e-09	0.081059771706896	0.897370206375142	40	chr17:78681399:A:G	PP.H4.abf
chr17:78797518:G:A	rs3744802	17	76793600	chr17:76793600-76793600	chr17:78797518	G	A	0.480899	10136	ENSG00000055483.15	USP36	protein_coding	4373	1.03839	389.995	366.221	1.5e-32	322	428	1	2.97e-37	0.401394	0.0284734	1e-04	4.35e-31	2.46e-30	0.000324542	ENSG00000055483-chr17:78797518:G:A	chr17:78741036:A:G	0.215	NA	NA	NA	+	NA	NA	NA	0.0677	UC	4363	1301	259	TRUE	TRUE	0.0814604358255831	7.18987989484901e-39	0.308906422421492	0.60963314175292	7	chr17:78797518:G:A	PP.H4.abf
chr19:40715608:G:C	rs4802085	19	41221513	chr19:41221513-41221513	chr19:40715608	G	C	0.452809	-1496	ENSG00000086544.2	ITPKC	protein_coding	4300	1.07445	226.391	347.192	6.26e-10	317	403	1	9.21e-12	-0.292093	0.0416394	1e-04	4.24e-08	5.4e-08	0.00061248	ENSG00000086544-chr19:40715608:G:C	chr19:40712706:G:A	0.802	0.24	0.853	0.386	+	+	+	+	-0.0603	IBD	4242	480	148	TRUE	TRUE	2.99073108843127e-05	4.80671871891949e-08	0.0596490654993769	0.940320979098824	1	chr19:40712706:G:A	PP.H4.abf
chr19:48703417:G:A	rs601338	19	49206674	chr19:49206674-49206674	chr19:48703417	G	A	0.467416	7445	ENSG00000176920.10	FUT2	protein_coding	4746	1.02771	286.088	361.667	1.23e-88	324	416	1	4.04e-103	-0.939191	0.0322236	1e-04	1.49e-88	9.14e-87	0.000430132	ENSG00000176920-chr19:48703417:G:A	chr19:48706594:A:G	0.865	0.501	0.908	1	+	+	+	+	0.1035	CD	4745	1245	314	TRUE	TRUE	9.95565888682982e-09	1.58575958407503e-175	0.0133728249259639	0.986627165118392	1	chr19:48703417:G:A	PP.H4.abf
chr19:48707612:A:G	rs2638281	19	49210869	chr19:49210869-49210869	chr19:48707612	A	G	0.446067	-5131	ENSG00000176909.7	MAMSTR	protein_coding	4746	1.0635	286.715	357.062	0.000267141	310	397	-1	7.39e-05	0.255921	0.0639342	0.0593941	0.0608394	0.0309951	0.000470677	ENSG00000176909-chr19:48707612:A:G	chr19:48706594:A:G	0.72	0.882	0.571	0.833	+	+	+	+	0.1035	CD	4745	1245	314	TRUE	TRUE	4.66397386959891e-08	0.0859642973915343	0.0664227809333506	0.84761281543483	17	chr19:48706594:A:G	PP.H4.abf
chr19:54197981:G:A	rs34629529	19	54701846	chr19:54701846-54701846	chr19:54197981	G	A	0.423596	8056	ENSG00000170892.6	TSEN34	protein_coding	4073	1.06497	320.511	360.987	3.36e-06	303	377	1	5.02e-07	0.167179	0.0327504	0.0009999	0.000670901	0.000520577	0.000422615	ENSG00000170892-chr19:54197981:G:A	chr19:54203491:G:A	0.944	0.775	0.906	0.959	+	+	+	+	0.0879	CD	3991	530	41	TRUE	TRUE	2.18152295371569e-07	0.000330131847142619	0.0393191134806315	0.960350534731948	33	chr19:54209282:G:A	PP.H4.abf
chr1:101120491:A:T	rs56403901	1	101586047	chr1:101586047-101586047	chr1:101120491	A	T	0.273034	94612	ENSG00000233184.2	RP11-421L21.3	antisense	4804	1.06113	200.187	352.055	2.7e-10	201	243	1	4.68e-12	0.446899	0.0627671	1e-04	1.89e-08	2.5e-08	0.000670022	ENSG00000233184-chr1:101120491:A:T	chr1:101000498:C:T	0.687	0.376	0.636	0.289	+	+	+	+	0.0346	IBD	4804	1691	321	TRUE	TRUE	0.0452378442919238	2.5528706914553e-08	0.020016530713664	0.934745544344307	17	chr1:101120491:A:T	PP.H4.abf
chr1:1309988:G:A	rs11590283	1	1245368	chr1:1245368-1245368	chr1:1309988	G	A	0.241573	17611	ENSG00000131584.14	ACAP3	protein_coding	2002	1.03774	98.8098	354.435	4.04e-12	179	215	-1	3.77e-14	0.218524	0.0278802	1e-04	1.74e-10	2.74e-10	0.00127798	ENSG00000131584-chr1:1309988:G:A	chr1:1388944:G:A	0.821	0.3	0.845	0.896	+	+	+	+	-0.0944	IBD	2001	4130	694	TRUE	TRUE	1.19234953599935e-09	2.65478747487135e-11	0.0142600876973235	0.985739911083781	2	chr1:1309988:G:A	PP.H4.abf
chr1:1337898:A:G	rs307370	1	1273278	chr1:1273278-1273278	chr1:1337898	A	G	0.189888	26312	ENSG00000127054.14	CPSF3L	protein_coding	2023	1.0176	106.046	357.082	1.27e-05	148	169	-1	2.08e-06	-0.168553	0.035028	0.0009999	0.00119393	0.000888239	0.00112899	ENSG00000127054-chr1:1337898:A:G	chr1:1388944:G:A	0.832	NA	0.282	NA	+	NA	+	NA	-0.0944	IBD	2022	4130	694	TRUE	TRUE	3.23413165153665e-09	0.00991165992105158	0.0404031330214296	0.949685203048214	10	chr1:1376162:G:C	PP.H4.abf
chr1:1418181:A:G	rs4970447	1	1353561	chr1:1353561-1353561	chr1:1418181	A	G	0.088764	-982676	ENSG00000157911.5	PEX10	protein_coding	3455	1.04434	225.508	359.483	0.00019907	73	79	1	5.55e-05	0.229001	0.0562282	0.0357964	0.0375101	0.0204243	0.000569908	ENSG00000157911-chr1:1418181:A:G	chr1:1388944:G:A	0.357	NA	NA	NA	-	NA	NA	NA	-0.0944	IBD	3453	4130	274	TRUE	FALSE	3.25816416113481e-06	0.159748336822128	0.101099584700448	0.739143709425549	26	chr1:1431450:A:G	PP.H4.abf
chr1:1432355:G:A	rs2291885	1	1367735	chr1:1367735-1367735	chr1:1432355	G	A	0.17191	46643	ENSG00000221978.7	CCNL2	protein_coding	2253	1.0512	126.537	354.991	0.000405129	134	153	1	0.000115008	0.187508	0.0481643	0.0385961	0.041957	0.0225567	0.00103339	ENSG00000221978-chr1:1432355:G:A	chr1:1388944:G:A	0.336	NA	0.373	NA	-	NA	-	NA	-0.0944	IBD	2251	4130	694	TRUE	TRUE	1.09898668500896e-08	0.3424362169262	0.140002991632328	0.517560753670267	10	chr1:1376162:G:C	PP.H4.abf
chr1:1441187:A:G	rs1240697	1	1376567	chr1:1376567-1376567	chr1:1441187	A	G	0.224719	39278	ENSG00000242485.1	MRPL20	protein_coding	2280	1.02607	131.711	359.607	3.34e-08	169	200	1	2.19e-09	0.301834	0.0493515	1e-04	3.16e-06	3.31e-06	0.000929943	ENSG00000242485-chr1:1441187:A:G	chr1:1388944:G:A	0.351	NA	0.451	NA	-	NA	-	NA	-0.0944	IBD	2278	4130	694	TRUE	TRUE	1.76175333964736e-09	3.74144621672748e-06	0.0215479895715698	0.978448267220169	10	chr1:1309988:G:A	PP.H4.abf
chr1:150648093:C:G	rs3087960	1	150620569	chr1:150620569-150620569	chr1:150648093	C	G	0.41236	47241	ENSG00000143420.13	ENSA	protein_coding	2512	1.03904	93.3911	345.925	6.69e-06	298	367	1	6.54e-07	0.192731	0.0381545	0.00039996	0.00046072	0.000365905	0.00135665	ENSG00000143420-chr1:150648093:C:G	chr1:150706557:G:A	0.925	0.742	0.91	0.979	+	+	+	+	-0.0766	IBD	2507	3647	869	TRUE	TRUE	1.84817448464544e-09	0.000560631041784071	0.164252228059637	0.835187139044129	2	chr1:150706557:G:A	PP.H4.abf
chr1:150748699:G:T	rs1134067	1	150721175	chr1:150721175-150721175	chr1:150748699	G	T	0.410112	50638	ENSG00000143452.11	HORMAD1	protein_coding	2625	1.0789	96.6551	337.93	1.18e-20	300	365	1	2.12e-25	0.619419	0.0556606	1e-04	4.23e-20	1.29e-19	0.00144941	ENSG00000143452-chr1:150748699:G:T	chr1:150706557:G:A	0.986	0.74	0.975	0.979	+	+	+	+	-0.0766	IBD	2620	3647	869	TRUE	TRUE	1.27875023169218e-09	8.80193427421652e-22	0.113337168408909	0.886662830312341	6	chr1:150706557:G:A	PP.H4.abf
chr1:201005936:G:A	rs10920091	1	200975064	chr1:200975064-200975064	chr1:201005936	G	A	0.319101	-501306	ENSG00000224536.1	RP11-134G8.7	antisense	5129	1.04461	426.864	365.5	1.03e-05	240	284	1	2.13e-06	0.267187	0.0555792	0.00319968	0.00336647	0.00232033	0.000301341	ENSG00000224536-chr1:201005936:G:A	chr1:200905101:G:C	0.607	NA	NA	NA	+	NA	NA	NA	-0.1456	IBD	5129	3292	985	TRUE	TRUE	5.80390647562955e-29	0.0205002757399671	0.103516877613541	0.875982846646494	7	chr1:200905101:G:C	PP.H4.abf
chr1:205504644:T:C	rs77694338	1	205473772	chr1:205473772-205473772	chr1:205504644	T	C	0.259551	48	ENSG00000117266.11	CDK18	protein_coding	4585	1.02477	482.8	371.3	2.35e-30	196	231	1	2.83e-34	-0.539089	0.0402956	1e-04	2.41e-28	1.17e-27	0.000252921	ENSG00000117266-chr1:205504644:T:C	chr1:205516162:T:A	0.915	0.221	0.795	0.603	+	+	+	+	0.0739	UC	4582	99	49	TRUE	TRUE	0.000320885815464982	2.30415085629989e-34	0.0210608975883444	0.978618216596185	2	chr1:205514945:G:A	PP.H4.abf
chr1:2569454:G:A	rs4648647	1	2500893	chr1:2500893-2500893	chr1:2569454	G	A	0.474157	-21186	ENSG00000142606.11	MMEL1	protein_coding	3356	1.03115	245.541	366.015	0.000121533	331	422	1	3.68e-05	-0.19811	0.0474931	0.0249975	0.0259984	0.0148403	0.000505719	ENSG00000142606-chr1:2569454:G:A	chr1:2557169:T:C	0.868	0.316	0.764	0.715	+	+	+	+	-0.0936	UC	3354	2452	271	TRUE	TRUE	4.37603946558621e-11	0.0189663636060457	0.0585693090869659	0.922464327249276	18	chr1:2557169:T:C	PP.H4.abf
chr1:62835981:G:A	rs10889384	1	63301652	chr1:63301652-63301652	chr1:62835981	G	A	0.385393	51845	ENSG00000125703.10	ATG4C	protein_coding	4918	1.04506	325.553	362.172	2.98e-08	277	343	-1	2.18e-09	0.247222	0.0404173	1e-04	5.65e-06	5.75e-06	0.000395552	ENSG00000125703-chr1:62835981:G:A	chr1:62768997:T:A	0.916	0.328	0.9	0.901	+	+	+	+	-0.0745	CD	4917	961	298	TRUE	TRUE	0.000139957995931928	3.4838501409449e-06	0.0716467991031659	0.928209752332296	27	chr1:62839848:C:G	PP.H4.abf
chr1:70536953:C:A	rs2780750	1	71002636	chr1:71002636-71002636	chr1:70536953	C	A	0.458427	-315401	ENSG00000050628.16	PTGER3	protein_coding	3725	1.04108	180.258	353.394	0.000189987	309	408	-1	4.53e-05	0.192904	0.0468027	0.0281972	0.0287848	0.0161995	0.000706914	ENSG00000050628-chr1:70536953:C:A	chr1:70567336:A:C	0.531	NA	0.567	0.764	+	NA	+	+	-0.0724	UC	3725	459	191	TRUE	TRUE	0.000104251743154891	0.0984186189962415	0.0689733335447696	0.832356811816142	15	chr1:70527268:C:T	PP.H4.abf
chr1:77984833:C:A	rs34517439	1	78450517	chr1:78450517-78450517	chr1:77984833	C	A	0.111236	40776	ENSG00000162613.12	FUBP1	protein_coding	4924	1.06187	231.192	349.046	1.16e-08	90	99	1	3.51e-10	-0.370636	0.0576651	1e-04	1.18e-06	1.3e-06	0.000581284	ENSG00000162613-chr1:77984833:C:A	chr1:78157942:C:T	0.716	0.623	1	NA	+	+	+	NA	-0.0965	CD	4924	1943	582	TRUE	TRUE	0.018911049938147	8.83882626125076e-07	0.0014099530456008	0.97967111824768	1	chr1:77984833:C:A	PP.H4.abf
chr1:93213411:T:G	rs661126	1	93678968	chr1:93678968-93678968	chr1:93213411	T	G	0.364045	63668	ENSG00000117500.8	TMED5	protein_coding	3885	1.05336	152.015	350.623	7.89e-20	266	324	-1	1.51e-23	0.281895	0.0265178	1e-04	1.47e-18	4.08e-18	0.000865043	ENSG00000117500-chr1:93213411:T:G	chr1:93349933:T:C	0.783	0.366	0.771	0.952	+	+	+	+	0.0839	CD	3885	3294	761	TRUE	TRUE	4.06710765666654e-06	2.99824482954802e-21	0.355882999422666	0.644112933469676	19	chr1:93211021:A:G	PP.H4.abf
chr1:93350843:A:G	rs12133576	1	93816400	chr1:93816400-93816400	chr1:93350843	A	G	0.35618	4954	ENSG00000117505.8	DR1	protein_coding	3925	1.02713	178.438	361.781	6.13e-46	262	317	-1	2.68e-53	-0.495371	0.0278225	1e-04	7.39e-45	7.82e-44	0.000688458	ENSG00000117505-chr1:93350843:A:G	chr1:93349933:T:C	1	1	1	0.995	+	+	+	+	0.0839	CD	3925	3294	761	TRUE	TRUE	5.46790007719531e-07	4.1881239602989e-65	0.0469791907765071	0.953020262433488	9	chr1:93349933:T:C	PP.H4.abf
chr20:14693192:G:T	rs1932953	20	14673838	chr20:14673838-14673838	chr20:14693192	G	T	0.217978	370203	ENSG00000125848.9	FLRT3	protein_coding	4586	1.06584	208.726	345.203	5.18e-35	174	194	1	1.99e-42	0.910808	0.0594631	1e-04	8.26e-35	5.46e-34	0.000650254	ENSG00000125848-chr20:14693192:G:T	chr20:14618543:C:A	0.653	NA	0.459	0.306	+	NA	+	+	-0.0896	CD	4584	1289	426	TRUE	TRUE	0.00011436645588338	4.91007498424851e-42	0.0973579974814005	0.902527636062716	3	chr20:14697142:C:T	PP.H4.abf
chr20:32353569:A:C	rs2424874	20	30941372	chr20:30941372-30941372	chr20:32353569	A	C	0.460674	167091	ENSG00000235217.5	TSPY26P	pseudogene	3733	1.03954	176.502	353.549	9.76e-11	315	410	1	1.55e-12	0.407254	0.0558701	1e-04	8.35e-09	1.14e-08	0.000719068	ENSG00000235217-chr20:32353569:A:C	chr20:32503432:T:C	0.277	NA	0.313	NA	-	NA	-	NA	0.0665	IBD	3729	3223	708	TRUE	TRUE	2.60722018505427e-05	2.39633236562678e-08	0.245943852093873	0.754030051738421	44	chr20:32353569:A:C	PP.H4.abf
chr20:32461892:C:T	rs17356521	20	31049695	chr20:31049695-31049695	chr20:32461892	C	T	0.304494	254011	ENSG00000101346.7	POFUT1	protein_coding	3749	1.04979	167.635	348.078	0.00050642	227	271	1	0.000128509	-0.196129	0.0507432	0.0682932	0.0703849	0.0350024	0.00077737	ENSG00000101346-chr20:32461892:C:T	chr20:32503432:T:C	0.765	0.223	0.609	0.612	+	+	+	+	0.0665	IBD	3745	3223	708	TRUE	TRUE	6.66203182742841e-06	0.0776243954162668	0.0621766530803001	0.860184085757459	9	chr20:32503432:T:C	PP.H4.abf
chr20:41383113:A:G	rs7275102	20	40011753	chr20:40011753-40011753	chr20:41383113	A	G	0.301124	-18989	ENSG00000124177.10	CHD6	protein_coding	4453	1.07248	256.767	349.582	4.1e-05	227	268	1	6.57e-06	-0.166532	0.0364818	0.00609939	0.00728733	0.00472874	0.000537433	ENSG00000124177-chr20:41383113:A:G	chr20:41301389:T:G	0.377	NA	NA	NA	+	NA	NA	NA	0.0733	IBD	4453	4660	1073	TRUE	TRUE	0.000179675205223671	0.0145991002499884	0.0991571365019982	0.88603786839962	27	chr20:41263242:A:G	PP.H4.abf
chr20:46120612:T:C	rs4239702	20	44749251	chr20:44749251-44749251	chr20:46120612	T	C	0.269663	2339	ENSG00000101017.9	CD40	protein_coding	5034	1.04806	295.6	360.616	0.000126342	209	240	-1	3.36e-05	0.193878	0.046244	0.0293971	0.0306395	0.0171166	0.000438998	ENSG00000101017-chr20:46120612:T:C	chr20:46118343:T:C	0.852	NA	0.976	0.995	+	NA	+	+	-0.1004	CD	5033	1476	472	TRUE	TRUE	1.24005132460026e-09	0.109671527980867	0.0319856849997321	0.858342781638616	9	chr20:46120612:T:C	PP.H4.abf
chr20:63697746:G:A	rs6062496	20	62329099	chr20:62329099-62329099	chr20:63697746	G	A	0.414607	-9719	ENSG00000197114.7	ZGPAT	protein_coding	5554	1.05594	611.114	362.811	3.18e-05	286	369	-1	7.23e-06	-0.119934	0.0263959	0.0145985	0.0150771	0.00913253	0.000216695	ENSG00000197114-chr20:63697746:G:A	chr20:63697746:G:A	1	1	1	1	+	+	+	+	0.1404	IBD	5552	5394	1699	TRUE	TRUE	1.12003312300706e-39	0.00234219419194816	0.0269113923016061	0.970746413506451	1	chr20:63697746:G:A	PP.H4.abf
chr22:26693692:G:T	rs2032576	22	27089655	chr22:27089655-27089655	chr22:26693692	G	T	0.389888	20924	ENSG00000244625.1	CTA-211A9.5	lincRNA	6140	1.03903	705.2	373.021	2.99e-11	273	347	-1	1.54e-12	0.383983	0.0526725	1e-04	1.04e-08	1.41e-08	0.000179798	ENSG00000244625-chr22:26693692:G:T	chr22:26641724:G:C	NA	NA	NA	0.26	NA	NA	NA	+	-0.0534	IBD	6133	581	193	FALSE	TRUE	0.000660541265418751	0.325197615068665	0.031050200944735	0.636312530076321	15	chr22:26641724:G:C	PP.H4.abf
chr22:41837046:C:T	rs76902725	22	42233050	chr22:42233050-42233050	chr22:41837046	C	T	0.0977528	-101676	ENSG00000100162.10	CENPM	protein_coding	4253	1.07192	165.928	342.411	2.59e-08	77	87	1	6.38e-10	-0.328029	0.0518434	1e-04	1.71e-06	1.85e-06	0.00083032	ENSG00000100162-chr22:41837046:C:T	chr22:41471373:C:T	0.232	NA	NA	NA	-	NA	NA	NA	-0.0214	IBD	4244	6807	1417	FALSE	TRUE	0.00715872634056171	0.0235434354548604	0.148921048776796	0.819251233972598	7	chr22:41162361:C:G	PP.H4.abf
chr22:50011102:A:G	rs73183310	22	50449531	chr22:50449531-50449531	chr22:50011102	A	G	0.323595	95369	ENSG00000198355.4	PIM3	protein_coding	5785	1.05908	377.023	353.775	4.11e-07	242	288	1	3.18e-08	0.193044	0.0342494	0.00019998	8.99e-05	7.87e-05	0.000354008	ENSG00000198355-chr22:50011102:A:G	chr22:50003556:A:C	0.445	0.402	0.58	0.45	-	-	-	-	0.1014	UC	5773	656	74	TRUE	TRUE	1.48545083721602e-12	0.000152441112705548	0.124225289963994	0.875622268921816	7	chr22:50003556:A:C	PP.H4.abf
chr2:186635302:A:G	rs28616716	2	187500029	chr2:187500029-187500029	chr2:186635302	A	G	0.0910112	45236	ENSG00000138448.7	ITGAV	protein_coding	4466	1.0345	123.463	347.995	6.84e-10	77	81	1	1.08e-11	0.393448	0.0562906	1e-04	4.74e-08	6.01e-08	0.00101434	ENSG00000138448-chr2:186635302:A:G	chr2:186665389:C:G	0.968	0.466	0.978	0.75	+	+	+	+	-0.1042	IBD	4466	1239	376	TRUE	TRUE	8.584500592217e-06	1.94449565921031e-08	0.0147151689732311	0.98527622707059	13	chr2:186638119:T:C	PP.H4.abf
chr2:198080956:G:T	rs16827465	2	198945680	chr2:198945680-198945680	chr2:198080956	G	T	0.22809	276253	ENSG00000115896.11	PLCL1	protein_coding	2927	1.05808	105.861	343.009	3.37e-06	179	203	1	2.54e-07	0.325765	0.0621663	0.00029997	0.000219431	0.000183336	0.0012568	ENSG00000115896-chr2:198080956:G:T	chr2:198032171:A:G	0.222	NA	NA	NA	-	NA	NA	NA	-0.0903	CD	2927	3530	646	TRUE	TRUE	1.20425343576096e-06	0.0012484823545579	0.282316065388662	0.716434242691272	33	chr2:198035564:C:T	PP.H4.abf
chr2:233234402:C:G	rs34701569	2	234143048	chr2:234143048-234143048	chr2:233234402	C	G	0.478652	-41326	ENSG00000252010.1	SCARNA5	snoRNA	5164	1.03892	369.863	360.894	2.08e-06	324	426	-1	2.87e-07	0.150853	0.0289191	0.00049995	0.000571882	0.00044858	0.000342677	ENSG00000252010-chr2:233234402:C:G	chr2:233252565:A:T	0.893	NA	0.871	0.906	+	NA	+	+	0.218	CD	5163	2773	733	TRUE	TRUE	1.95202342505504e-58	0.000231469508570633	0.0738709654290034	0.925897565062413	27	chr2:233252565:A:T	PP.H4.abf
chr2:233237401:G:T	rs12692250	2	234146047	chr2:234146047-234146047	chr2:233237401	G	T	0.407865	27349	ENSG00000085978.17	ATG16L1	protein_coding	5189	1.07743	346.831	354.064	2.49e-08	291	363	-1	1.16e-09	0.30516	0.0490138	1e-04	3.38e-06	3.53e-06	0.000402798	ENSG00000085978-chr2:233237401:G:T	chr2:233252565:A:T	0.657	NA	0.653	0.769	+	NA	+	+	0.218	CD	5188	2773	733	TRUE	TRUE	1.06779953075452e-57	9.4699844255334e-05	0.408563867371763	0.591341432783975	30	chr2:233252565:A:T	PP.H4.abf
chr2:241456171:T:G	rs6737246	2	242395586	chr2:242395586-242395586	chr2:241456171	T	G	0.248315	-36504	ENSG00000115694.10	STK25	protein_coding	3763	1.09274	185.028	339.403	2.11e-59	186	221	1	1.99e-73	0.649123	0.0290863	1e-04	2.2e-62	4.88e-61	0.000783373	ENSG00000115694-chr2:241456171:T:G	chr2:241546197:C:T	NA	NA	0.257	NA	NA	NA	+	NA	-0.083	IBD	3748	237	78	FALSE	TRUE	0.00695024811419446	3.19559083268239e-06	0.339702588799267	0.65334390224005	10	chr2:241533688:C:G	PP.H4.abf
chr2:25265950:T:A	rs7578575	2	25488819	chr2:25488819-25488819	chr2:25265950	T	A	0.330337	-590512	ENSG00000218682.1	AC010150.1	pseudogene	3669	1.02473	237.597	362.151	6.29e-05	249	294	1	1.56e-05	0.300154	0.0686718	0.0110989	0.013232	0.00812153	0.000513804	ENSG00000218682-chr2:25265950:T:A	chr2:25265950:T:A	1	1	1	1	+	+	+	+	0.081	IBD	3669	5979	980	TRUE	TRUE	1.30024431449737e-11	0.00967675769273675	0.00268446585194802	0.987638776408049	1	chr2:25265950:T:A	PP.H4.abf
chr2:28383911:C:T	rs2879179	2	28606778	chr2:28606778-28606778	chr2:28383911	C	T	0.488764	-42035	ENSG00000270210.1	RP11-373D23.3	lincRNA	4531	1.06329	298.452	353.786	5.17e-08	329	435	1	2.72e-09	0.35155	0.0578352	1e-04	7.44e-06	7.47e-06	0.000451935	ENSG00000270210-chr2:28383911:C:T	chr2:28423081:C:T	0.61	NA	0.344	NA	+	NA	+	NA	0.1051	CD	4530	450	139	TRUE	TRUE	3.12676753139703e-11	0.000178524703407418	0.171715939612875	0.828105535652419	5	chr2:28423081:C:T	PP.H4.abf
chr2:43762128:G:A	rs79720706	2	43989267	chr2:43989267-43989267	chr2:43762128	G	A	0.0202247	-11912	ENSG00000138036.14	DYNC2LI1	protein_coding	5762	1.03319	365.109	356.629	8.54e-13	17	18	1	7.2e-15	-1.33232	0.165023	1e-04	1.49e-10	2.36e-10	0.000341971	ENSG00000138036-chr2:43762128:G:A	chr2:43582208:G:C	NA	0.249	NA	NA	NA	+	NA	NA	0.1816	CD	5760	3919	1215	FALSE	TRUE	8.25422158148238e-09	0.144529826479235	0.152703211322987	0.702766946166928	50	chr2:43624107:C:A	PP.H4.abf
chr3:101187066:C:T	rs906380	3	100905910	chr3:100905910-100905910	chr3:101187066	C	T	0.422472	-640926	ENSG00000144802.7	NFKBIZ	protein_coding	4204	1.05079	180.117	354.156	0.000419777	296	376	1	0.000117722	0.209487	0.053891	0.059594	0.0624258	0.0316687	0.000725378	ENSG00000144802-chr3:101187066:C:T	chr3:101304904:A:G	0.504	0.374	0.479	0.308	+	+	+	+	-0.0636	CD	4204	2470	768	FALSE	TRUE	0.00269783933933613	0.393766602647572	0.0627053834377976	0.524029148159064	46	chr3:101275653:C:T	PP.H4.abf
chr3:49352409:C:T	rs17080528	3	49389842	chr3:49389842-49389842	chr3:49352409	C	T	0.304494	-70538	ENSG00000145029.7	NICN1	protein_coding	2056	1.03102	52.2993	335.766	2.01e-05	225	271	1	1.75e-06	0.210217	0.0433519	0.00029997	0.000838594	0.000640024	0.00237073	ENSG00000145029-chr3:49352409:C:T	chr3:49676792:T:C	0.86	0.596	0.719	0.525	+	+	+	+	0.1633	IBD	2053	20531	1966	TRUE	TRUE	3.97038214740416e-50	0.00176519869942986	0.170367971677324	0.827866829623241	14	chr3:49676792:T:C	PP.H4.abf
chr3:49653063:C:T	rs11709525	3	49690496	chr3:49690496-49690496	chr3:49653063	C	T	0.297753	-20940	ENSG00000164062.8	APEH	protein_coding	2206	1.02606	55.612	346.028	1.21e-06	223	265	1	8.23e-08	0.161382	0.029568	1e-04	5.16e-05	4.66e-05	0.00220071	ENSG00000164062-chr3:49653063:C:T	chr3:49676792:T:C	0.992	0.878	0.974	1	+	+	+	+	0.1633	IBD	2206	20531	1799	TRUE	TRUE	9.43968396058916e-51	1.66425029469204e-05	0.0401337902812413	0.959849567215808	13	chr3:49676792:T:C	PP.H4.abf
chr3:52034256:A:T	rs6792297	3	52068272	chr3:52068272-52068272	chr3:52034256	A	T	0.041573	-40998	ENSG00000164087.3	POC1A	protein_coding	2473	1.0352	72.7032	347.099	1.53e-05	35	37	1	1.86e-06	0.372938	0.0771163	0.00079992	0.000864088	0.000657715	0.0017249	ENSG00000164087-chr3:52034256:A:T	chr3:52013158:TGGA:T	0.294	NA	0.276	0.72	+	NA	+	+	0.1353	UC	2473	970	95	TRUE	FALSE	0.00231144764346995	0.124519297207966	0.352104049265614	0.520248983525254	5	chr3:52009873:A:G	PP.H4.abf
chr4:122365072:G:A	rs11727369	4	123286227	chr4:123286227-123286227	chr4:122365072	G	A	0.338202	212738	ENSG00000138688.11	KIAA1109	protein_coding	5723	1.06402	276.312	356.392	2.57e-34	252	301	1	2.52e-40	-0.464225	0.0313133	1e-04	7.01e-34	4.48e-33	0.000489028	ENSG00000138688-chr4:122365072:G:A	chr4:122523884:G:GT	0.79	0.434	0.54	0.436	+	+	+	+	0.0827	IBD	5721	3893	1090	TRUE	FALSE	1.43569909183325e-13	1.80500726185665e-42	0.48620751416535	0.513792485834511	10	chr4:122267346:A:G	PP.H4.abf
chr4:74007885:T:C	rs187082	4	74873602	chr4:74873602-74873602	chr4:74007885	T	C	0.0820225	12242	ENSG00000163735.6	CXCL5	protein_coding	3502	1.04135	126.192	345.08	2.87e-06	72	73	-1	2.27e-07	-0.553427	0.105166	0.00039996	0.000256304	0.000211653	0.00101029	ENSG00000163735-chr4:74007885:T:C	chr4:73991991:A:G	0.569	NA	NA	NA	+	NA	NA	NA	0.0633	UC	3487	734	184	TRUE	TRUE	0.00011225100914874	0.00314636643142853	0.0215125861844609	0.975213090844921	11	chr4:73990946:T:C	PP.H4.abf
chr5:150957320:A:C	rs4958430	5	150336882	chr5:150336882-150336882	chr5:150957320	A	C	0.11236	356239	ENSG00000171992.8	SYNPO	protein_coding	4966	1.03479	352.793	361.667	0.000283345	95	100	1	8.8e-05	-0.187717	0.0474039	0.0846915	0.0864295	0.0415461	0.000355396	ENSG00000171992-chr5:150957320:A:C	chr5:150860514:C:T	0.614	NA	0.225	0.658	+	NA	+	+	0.1561	IBD	4963	7493	1816	TRUE	TRUE	8.81622551889795e-28	0.186846359115154	0.248569365646916	0.564584275237934	104	chr5:150860514:C:T	PP.H4.abf
chr5:177372991:T:C	rs10051765	5	176799992	chr5:176799992-176799992	chr5:177372991	T	C	0.306742	15153	ENSG00000169220.13	RGS14	protein_coding	3415	1.05522	237.568	357.886	6.76e-29	222	273	1	8.85e-34	-0.439302	0.0331368	1e-04	5.9e-28	2.82e-27	0.000556269	ENSG00000169220-chr5:177372991:T:C	chr5:177372991:T:C	1	1	1	1	+	+	+	+	0.0753	IBD	3413	425	88	TRUE	TRUE	3.3164727881425e-11	1.57042933920529e-35	0.000541057843803224	0.999458942123034	1	chr5:177372991:T:C	PP.H4.abf
chr5:178213863:A:G	rs12522289	5	177640864	chr5:177640864-177640864	chr5:178213863	A	G	0.0696629	9355	ENSG00000197451.6	HNRNPAB	protein_coding	4897	1.06933	312.607	350.252	1.68e-43	60	62	1	4.63e-52	-1.17391	0.0669853	1e-04	8.21e-44	8.34e-43	0.000438032	ENSG00000197451-chr5:178213863:A:G	chr5:178217126:CAG:C	0.764	0.973	0.879	0.601	+	+	+	+	-0.1443	UC	4893	299	111	TRUE	FALSE	0.000886699753346382	4.55874180823718e-53	0.418482107050332	0.580631193196322	3	chr5:178213863:A:G	PP.H4.abf
chr5:554096:C:T	rs72704802	5	554211	chr5:554211-554211	chr5:554096	C	T	0.158427	80785	ENSG00000066230.6	SLC9A3	protein_coding	4332	1.04039	385.028	363.645	1.84e-11	129	141	1	4.56e-13	0.269559	0.0360705	1e-04	3.26e-09	4.61e-09	0.000330444	ENSG00000066230-chr5:554096:C:T	chr5:573904:G:A	0.947	0.924	0.909	NA	+	+	+	NA	-0.1108	UC	4321	2677	641	TRUE	TRUE	4.53635899956562e-05	3.49510730582291e-10	0.0315652397895736	0.968389396270433	15	chr5:554096:C:T	PP.H4.abf
chr5:96916728:G:A	rs2927608	5	96252432	chr5:96252432-96252432	chr5:96916728	G	A	0.397753	40788	ENSG00000164308.12	ERAP2	protein_coding	5322	1.03128	198.322	351.859	3.74e-119	286	354	1	1.55e-142	1.21416	0.0310186	1e-04	1.71e-120	4.39e-118	0.000626294	ENSG00000164308-chr5:96916728:G:A	chr5:96912106:T:C	0.931	0.732	0.508	0.576	-	-	-	-	-0.1115	CD	5322	1505	504	TRUE	FALSE	1.1486751991344e-10	1.40547842403751e-318	0.14575090770554	0.85424909217958	2	chr5:96916885:T:C	PP.H4.abf
chr6:111592059:C:T	rs33980500	6	111913262	chr6:111913262-111913262	chr6:111592059	C	T	0.0505618	-7817	ENSG00000255389.1	C6orf3	antisense	4493	1.06165	262.979	355.197	2e-12	44	45	1	1.74e-14	-1.07204	0.134875	1e-04	1.37e-10	2.18e-10	0.000510767	ENSG00000255389-chr6:111592059:C:T	chr6:111594960:G:A	0.741	NA	0.532	NA	+	NA	+	NA	0.1942	UC	4491	5060	1516	TRUE	TRUE	2.34083959390717e-09	3.26624848608515e-06	0.0577604880864499	0.942236243324096	1	chr6:111592059:C:T	PP.H4.abf
chr6:127976459:C:G	rs3901020	6	128297604	chr6:128297604-128297604	chr6:127976459	C	G	0.121348	268386	ENSG00000172673.6	THEMIS	protein_coding	3594	1.0395	141.702	357.536	0.000741438	99	108	1	0.000246643	-0.235749	0.0637623	0.0892911	0.0896382	0.0428382	0.000895464	ENSG00000172673-chr6:127976459:C:G	chr6:127956006:A:G	0.915	NA	0.942	0.8	+	NA	+	+	0.0924	CD	3593	932	238	TRUE	TRUE	0.00718774355815011	0.147271446745278	0.0238531125127203	0.778712831218292	21	chr6:127968069:C:T	PP.H4.abf
chr7:100715797:A:G	rs506597	7	100313420	chr7:100313420-100313420	chr7:100715797	A	G	0.0550562	36289	ENSG00000146830.9	GIGYF1	protein_coding	4514	1.07428	231.222	344.235	1.04e-06	46	49	-1	6.36e-08	-0.290604	0.0527728	0.00029997	0.000125258	0.000107735	0.000599438	ENSG00000146830-chr7:100715797:A:G	chr7:100717894:A:G	0.613	0.507	0.512	0.981	+	+	+	+	-0.0937	CD	4484	1627	371	TRUE	TRUE	0.0030021487159425	0.000242642222835728	0.0581231857939088	0.938619689610531	15	chr7:100698285:A:G	PP.H4.abf
chr7:100769294:G:A	rs314294	7	100366917	chr7:100366917-100366917	chr7:100769294	G	A	0.0494382	95762	ENSG00000172354.5	GNB2	protein_coding	4497	1.05844	231.302	345.399	2.02e-07	42	44	1	9.15e-09	0.267349	0.0455953	1e-04	2.54e-05	2.39e-05	0.000576009	ENSG00000172354-chr7:100769294:G:A	chr7:100717894:A:G	0.451	NA	NA	NA	-	NA	NA	NA	-0.0937	CD	4467	1627	371	TRUE	TRUE	0.00332977054376562	4.41305854726259e-05	0.0645751192183683	0.93204873646698	14	chr7:100729466:G:C	PP.H4.abf
chr7:128936032:T:C	rs3757387	7	128576086	chr7:128576086-128576086	chr7:128936032	T	C	0.453933	-1581	ENSG00000128604.14	IRF5	protein_coding	4734	1.05029	275.127	355.321	1.27e-32	309	404	1	1.97e-38	0.60463	0.0420532	1e-04	1.13e-31	6.55e-31	0.000474358	ENSG00000128604-chr7:128936032:T:C	chr7:128936032:T:C	1	1	1	1	+	+	+	+	0.1038	UC	4733	1095	301	TRUE	TRUE	3.7172191022672e-14	6.25708200133007e-41	0.000503652595527275	0.99949634740444	1	chr7:128936032:T:C	PP.H4.abf
chr7:37416777:A:C	rs10257640	7	37456380	chr7:37456380-37456380	chr7:37416777	A	C	0.196629	562418	ENSG00000155849.11	ELMO1	protein_coding	5253	1.0537	333.337	353.817	8.68e-55	153	175	1	5.22e-65	0.876432	0.0428961	1e-04	4.82e-55	7.71e-54	0.000394966	ENSG00000155849-chr7:37416777:A:C	chr7:37417880:A:G	0.646	0.972	0.847	1	+	+	+	+	0.1341	CD	5253	275	137	TRUE	TRUE	2.61070687931206e-07	3.03264529984484e-82	0.404267151374154	0.595732587555159	29	chr7:37416613:C:T	PP.H4.abf
chr7:46853450:T:A	rs55896892	7	46893048	chr7:46893048-46893048	chr7:46853450	T	A	0.294382	941098	ENSG00000146674.10	IGFBP3	protein_coding	6346	1.07464	311.162	351.241	2.92e-06	222	262	1	2.95e-07	-0.281616	0.0540467	0.00039996	0.000520483	0.00041059	0.000445886	ENSG00000146674-chr7:46853450:T:A	chr7:46834111:A:T	0.962	0.7	0.894	0.923	+	+	+	+	0.0693	UC	6345	1135	426	TRUE	TRUE	7.94332601521778e-05	0.00039090109219594	0.0240985252889635	0.975429902000084	9	chr7:46853450:T:A	PP.H4.abf
chr8:115487459:A:T	rs2625673	8	116499686	chr8:116499686-116499686	chr8:115487459	A	T	0.398876	78961	ENSG00000104447.7	TRPS1	protein_coding	4025	1.0354	207.319	364.82	0.000379025	288	355	1	0.00013182	0.136495	0.0353735	0.0680932	0.0679814	0.0339919	0.000605645	ENSG00000104447-chr8:115487459:A:T	chr8:115614948:T:C	0.771	NA	0.554	0.644	-	NA	-	-	0.0702	UC	4017	1022	214	TRUE	TRUE	0.00051857596523529	0.0902906297142651	0.184062334631614	0.724875073372102	123	chr8:115614948:T:C	PP.H4.abf
chr8:27311444:G:A	rs7005244	8	27168961	chr8:27168961-27168961	chr8:27311444	G	A	0.476404	26556	ENSG00000104228.8	TRIM35	protein_coding	6805	1.03792	441.459	362.873	2.61e-20	316	424	-1	2.31e-23	-0.470077	0.0444286	1e-04	2.58e-18	7.07e-18	0.000286364	ENSG00000104228-chr8:27311444:G:A	chr8:27370037:A:G	NA	NA	0.207	NA	NA	NA	+	NA	-0.0631	CD	6801	307	55	FALSE	TRUE	0.012659158744797	0.000316836363384476	0.0124392818806224	0.974285706228805	6	chr8:27337604:T:C	PP.H4.abf
chr8:48242464:G:A	rs112111943	8	49155024	chr8:49155024-49155024	chr8:48242464	G	A	0.0370787	-675226	ENSG00000019549.4	SNAI2	protein_coding	3848	1.05322	105.129	340.217	0.000621062	32	33	1	0.000137856	0.501041	0.13023	0.0509949	0.0533829	0.0277809	0.00125006	ENSG00000019549-chr8:48242464:G:A	chr8:48207903:G:T	0.336	NA	0.789	NA	+	NA	+	NA	-0.1041	UC	3846	1224	410	TRUE	TRUE	1.62200150268446e-05	0.366047564760783	0.0912489315328395	0.542622601302465	114	chr8:48207903:G:T	PP.H4.abf
chr8:73104570:A:T	rs12334494	8	74016805	chr8:74016805-74016805	chr8:73104570	A	T	0.311236	40029	ENSG00000164764.10	SBSPON	protein_coding	5166	1.05902	320.625	355.218	9.37e-09	232	277	1	3.88e-10	0.380843	0.0594055	1e-04	1.38e-06	1.51e-06	0.000416196	ENSG00000164764-chr8:73104570:A:T	chr8:73095112:G:T	0.275	0.237	NA	NA	+	+	NA	NA	0.0264	IBD	5164	148	55	FALSE	TRUE	0.215259591140439	5.88321482839844e-07	0.0207192429343227	0.764014682695073	20	chr8:73093398:G:T	PP.H4.abf
chr9:136373081:G:A	rs4078099	9	139267533	chr9:139267533-139267533	chr9:136373081	G	A	0.383146	-37578	ENSG00000165688.7	PMPCA	protein_coding	3433	1.04512	230.083	360.853	0.000413532	266	341	1	0.000133905	0.142608	0.0369956	0.0817918	0.0799673	0.0389532	0.000559706	ENSG00000165688-chr9:136373081:G:A	chr9:136378050:T:C	0.855	0.848	0.77	0.516	+	+	+	+	0.1228	IBD	3432	1860	426	TRUE	TRUE	1.23902492588987e-32	0.0468774261150626	0.0383984827877933	0.914724091097145	13	chr9:136378050:T:C	PP.H4.abf
chr9:91158463:G:A	rs943502	9	93920745	chr9:93920745-93920745	chr9:91158463	G	A	0.279775	-250583	ENSG00000165030.3	NFIL3	protein_coding	6141	1.0525	298.871	352.003	7.83e-05	220	249	-1	1.53e-05	-0.267658	0.061166	0.0174983	0.0185574	0.0110072	0.000439156	ENSG00000165030-chr9:91158463:G:A	chr9:91166134:C:T	0.833	0.441	0.661	0.827	+	+	+	+	0.0658	UC	6138	1826	542	TRUE	TRUE	0.000955987916194307	0.0418089866015161	0.0249029092780743	0.930784955135474	6	chr9:91166134:C:T	PP.H4.abf
chr9:92747451:C:T	rs10992447	9	95509733	chr9:95509733-95509733	chr9:92747451	C	T	0.161798	134266	ENSG00000127080.5	IPPK	protein_coding	5596	1.04271	208.874	343.967	4.3e-06	133	144	1	3.54e-07	-0.352308	0.0680874	0.00059994	0.000652421	0.000507185	0.000612688	ENSG00000127080-chr9:92747451:C:T	chr9:92674850:A:G	0.913	0.304	0.549	NA	+	+	+	NA	0.0828	IBD	5595	3274	1040	TRUE	TRUE	2.31659642806506e-08	0.00266669249651392	0.139411730775746	0.857921553121364	43	chr9:92674850:A:G	PP.H4.abf
chr9:92803697:G:A	rs10992474	9	95565979	chr9:95565979-95565979	chr9:92803697	G	A	0.179775	309613	ENSG00000106823.8	ECM2	protein_coding	5642	1.05858	218.266	344.503	0.00029378	146	160	1	6.13e-05	0.261777	0.0646565	0.0515948	0.0514953	0.026931	0.000610613	ENSG00000106823-chr9:92803697:G:A	chr9:92674850:A:G	0.77	0.321	0.557	0.212	+	+	+	+	0.0828	IBD	5641	3274	1040	TRUE	TRUE	2.64421407605011e-08	0.19667400123841	0.159463001009177	0.643862938828958	47	chr9:92657385:A:G	PP.H4.abf