snp	gene	type	name	phe_chr	phe_from	phe_to	phe_strd	n_var_in_cis	dist_phe_var	var_id	var_chr	var_from	var_to	dof1	dof2	bml1	bml2	nom_pval	r_squared	slope	slope_se	adj_emp_pval	adj_beta_pval	qval	nom_pval_thresh	eqtl	GWAS_index_snp	R2_EUR	R2_AFR	R2_SAS	R2_EAS	Sign_EUR	Sign_AFR	Sign_SAS	Sign_EAS	GWAS_index_snp_slope	best_trait	IBD_snps	GWAS_snps	shared_snps	eSNP_in_GWAS	GWAS_index_SNP_in_eQTL	H1_hypothesis_eQTL	H2_hypothesis_GWAS	H3_hypothesis_different	H4_hypothesis_shared	number_snps_credible_set	H4_snp	coloc_likely_hypothesis	shared_snps_GTEx	GTEx_likely_hypothesis	GTEx_PP	shared_snps_BarcUVa	BarcUVa_likely_hypothesis	BarcUVa_PP
chr11:114553856:A:G	ENSG00000095110.8	protein_coding	NXPE1	chr11	114559895	114559895	-	5292	6039	chr11:114553856:A:G	chr11	114553856	114553856	250	228.979	0.958616	584.811	1.52024e-26	0.365966	-0.4782	0.0398084	0.000999001	8.35554e-21	8.14258498617171e-19	4.47897627464666e-06	ENSG00000095110-chr11:114553856:A:G	chr11:114516108:C:T	0.98	0.635	0.924	0.96	+	+	+	+	-0.0922	UC	5292	1355	544	TRUE	TRUE	6.38516770783958e-11	1.92499000025891e-27	0.0335885908658295	0.966411409070325	12	chr11:114522930:C:T	PP.H4.abf	582	PP.H4.abf	0.984744520619354	433	PP.H4.abf	0.98111074155705
chr11:114558061:G:A	ENSG00000238724.1	snoRNA	ENSG00000238724	chr11	114527129	114527129	+	5328	30932	chr11:114558061:G:A	chr11	114558061	114558061	250	212.939	1.00682	420.484	3.26816e-06	0.0831225	-0.22999	0.0483099	0.004995	0.00709734	0.044151266462934	3.89851857063306e-06	ENSG00000238724-chr11:114558061:G:A	chr11:114516108:C:T	0.977	0.467	0.906	0.96	+	+	+	+	-0.0922	UC	5328	1355	544	TRUE	TRUE	5.02023133073057e-11	0.002294434902532	0.0261967838920281	0.971508781150998	15	chr11:114558061:G:A	PP.H4.abf	582	PP.H4.abf	0.973163155533245	NA	NA	NA
chr11:65877883:A:G	ENSG00000172543.9	protein_coding	CTSW	chr11	65879809	65879809	+	3563	-1926	chr11:65877883:A:G	chr11	65877883	65877883	250	206.482	1.04356	196.204	7.07733e-21	0.296765	0.659825	0.0642395	0.000999001	7.42627e-16	4.0848838787028e-14	8.57451668501152e-06	ENSG00000172543-chr11:65877883:A:G	chr11:65873091:G:A	0.448	0.896	0.602	0.623	+	+	+	+	-0.0757	CD	3563	696	212	TRUE	TRUE	0.00101852928641847	3.15811717664766e-17	0.121994220683253	0.876987250030328	12	chr11:65879789:A:G	PP.H4.abf	229	PP.H4.abf	0.873535529737228	192	PP.H4.abf	0.855759292503397
chr12:119671479:AGGCACCTCTTCACAGGAC:A	ENSG00000111725.11	protein_coding	PRKAB1	chr12	119667864	119667864	+	5589	3615	chr12:119671479:AGGCACCTCTTCACAGGAC:A	chr12	119671479	119671497	250	212.634	0.968165	447.248	5.95256e-18	0.258239	0.588438	0.0630742	0.000999001	1.88268e-12	6.8230302929138e-11	2.80183137457701e-06	ENSG00000111725-chr12:119671479:AGGCACCTCTTCACAGGAC:A	chr12:119709120:G:A	0.88	0.889	0.942	NA	+	+	+	NA	0.1102	IBD	5589	776	257	TRUE	TRUE	2.88629757681637e-05	8.31293202350846e-15	0.00391800793708003	0.99605312908714	1	chr12:119709120:G:A	PP.H4.abf	285	PP.H4.abf	0.98738605162713	232	PP.H4.abf	0.999609130179422
chr12:6384185:A:G	ENSG00000111321.11	protein_coding	LTBR	chr12	6375045	6375045	+	5886	9140	chr12:6384185:A:G	chr12	6384185	6384185	250	217.505	1.02563	630.16	8.9114e-22	0.308225	-0.404201	0.038298	0.000999001	9.41921e-17	5.78536717942909e-15	3.46070955958844e-06	ENSG00000111321-chr12:6384185:A:G	chr12:6402491:G:A	0.212	NA	0.232	0.315	+	NA	+	+	0.0914	CD	5886	250	97	TRUE	TRUE	7.75150674420327e-06	1.63551711940416e-19	0.205560199888506	0.794432048604747	1	chr12:6384185:A:G	PP.H4.abf	113	PP.H4.abf	0.794394504282967	31	PP.H4.abf	0.885219301833409
chr13:43880181:AG:A	ENSG00000287029.1	lncRNA	ENSG00000287029	chr13	43786781	43786781	+	5150	93400	chr13:43880181:AG:A	chr13	43880181	43880182	250	237.012	0.988625	673.371	3.84851e-09	0.129833	-0.294889	0.0482833	0.000999001	7.54754e-06	9.73028786338835e-05	6.6742162774247e-06	ENSG00000287029-chr13:43880181:AG:A	chr13:43901262:A:G	0.385	0.328	0.239	0.213	+	+	+	+	0.1617	CD	5150	2999	975	TRUE	TRUE	1.34413936875418e-24	1.64947670080811e-05	0.383688435164769	0.61629507006822	6	chr13:43899730:G:T	PP.H4.abf	NA	NA	NA	NA	NA	NA
chr16:28471740:A:T	ENSG00000233232.7	protein_coding	NPIPB7	chr16	28471175	28471175	-	3844	-565	chr16:28471740:A:T	chr16	28471740	28471740	250	220.691	0.997786	363.87	1.48095e-06	0.088692	-0.328498	0.0665967	0.003996	0.00225655	0.0167684076095047	6.43778460607258e-06	ENSG00000233232-chr16:28471740:A:T	chr16:28519966:A:G	0.806	NA	0.528	0.478	+	NA	+	+	0.0876	IBD	3844	3571	760	TRUE	TRUE	2.00440845982609e-15	0.00359224806777807	0.0974414346412035	0.898966317291015	19	chr16:28518395:C:T	PP.H4.abf	994	PP.H4.abf	0.887846815275224	542	PP.H4.abf	0.685429276837564
chr16:28496323:C:G	ENSG00000184730.12	protein_coding	APOBR	chr16	28494643	28494643	+	3814	1680	chr16:28496323:C:G	chr16	28496323	28496323	250	215.149	1.03371	343.335	1.1188e-07	0.106715	0.151111	0.0276507	0.000999001	0.000220604	0.00212637499966497	6.4620434871987e-06	ENSG00000184730-chr16:28496323:C:G	chr16:28519966:A:G	0.806	NA	0.571	0.702	+	NA	+	+	0.0876	IBD	3814	3571	760	TRUE	TRUE	2.18720564271606e-15	0.000399587233914912	0.106415621869219	0.893184790896865	24	chr16:28495551:A:G	PP.H4.abf	994	PP.H2.abf	0.726533331244436	542	PP.H4.abf	0.77825690658121
chr16:28811719:AT:A	ENSG00000178952.11	protein_coding	TUFM	chr16	28846348	28846348	-	3723	34628	chr16:28811719:AT:A	chr16	28811719	28811720	250	199.719	1.03114	251.88	9.68675e-14	0.199208	0.187962	0.0238346	0.000999001	3.98723e-09	9.1130620166494e-08	4.10478033674444e-06	ENSG00000178952-chr16:28811719:AT:A	chr16:28519966:A:G	0.648	NA	0.273	0.346	+	NA	+	+	0.0876	IBD	3723	3571	760	TRUE	TRUE	4.2622347584922e-15	2.82119688013837e-11	0.208322324550313	0.791677675421469	35	chr16:28846324:A:G	PP.H4.abf	994	PP.H4.abf	0.986071540743685	542	PP.H4.abf	0.5083205828795
chr16:28813364:T:C	ENSG00000288656.1	protein_coding	ENSG00000288656	chr16	28623555	28623555	-	3784	-189809	chr16:28813364:T:C	chr16	28813364	28813364	250	194.849	1.01358	255.902	1.93109e-06	0.0868268	-0.158453	0.0324997	0.00899101	0.00628124	0.0401128124909257	2.7255717678365e-06	ENSG00000288656-chr16:28813364:T:C	chr16:28519966:A:G	0.651	0.689	0.282	0.364	+	+	+	+	0.0876	IBD	3784	3571	760	TRUE	TRUE	5.93278826000621e-15	0.00442542197016871	0.290369587390492	0.70520499063933	60	chr16:28521750:C:T	PP.H4.abf	NA	NA	NA	NA	NA	NA
chr16:28835925:T:C	ENSG00000260853.2	lncRNA	ENSG00000260853	chr16	28966883	28966883	-	3467	130958	chr16:28835925:T:C	chr16	28835925	28835925	250	197.839	1.08135	223.817	2.71022e-06	0.0844415	0.193202	0.0402354	0.00599401	0.00431457	0.0292493674819285	5.76630045279192e-06	ENSG00000260853-chr16:28835925:T:C	chr16:28519966:A:G	0.611	NA	NA	NA	+	NA	NA	NA	0.0876	IBD	3467	3571	760	TRUE	TRUE	7.84010948145665e-15	0.0165842026803006	0.384052530505296	0.599363266814392	64	chr16:28846324:A:G	PP.H4.abf	994	PP.H2.abf	0.508841413500286	NA	NA	NA
chr16:30281179:A:T	ENSG00000183604.15	transcribed_unprocessed_pseudogene	SMG1P5	chr16	30335381	30335381	-	2239	54202	chr16:30281179:A:T	chr16	30281179	30281179	250	217.078	1.01847	212.485	7.99328e-20	0.283125	0.400022	0.0402575	0.000999001	2.34942e-15	1.20903000535542e-13	1.12783661336824e-05	ENSG00000183604-chr16:30281179:A:T	chr16:30328432:G:A	0.957	NA	0.884	0.951	+	NA	+	+	0.087	UC	2239	4877	1076	TRUE	TRUE	3.82240476417842e-07	1.29791205499844e-17	0.0919143589984123	0.908085258761113	2	chr16:30329353:A:G	PP.H4.abf	1277	PP.H4.abf	0.980290026093671	645	PP.H4.abf	0.989596904676455
chr16:30329549:C:T	ENSG00000169203.17	protein_coding	NPIPB12	chr16	29505999	29505999	-	3090	-823550	chr16:30329549:C:T	chr16	30329549	30329549	250	211.572	1.0917	264.756	4.34319e-15	0.218573	0.340836	0.0407587	0.000999001	1.71011e-11	5.49736806819784e-10	1.00682198972413e-05	ENSG00000169203-chr16:30329549:C:T	chr16:30328432:G:A	0.918	NA	0.952	1	+	NA	+	+	0.087	UC	3090	4877	1076	TRUE	TRUE	1.77545008876194e-06	3.11602287083129e-11	0.430577009010647	0.569421215508104	6	chr16:30313173:C:T	PP.H4.abf	1277	PP.H4.abf	0.983554471849797	605	PP.H4.abf	0.986081152843305
chr16:68574608:T:C	ENSG00000184939.16	protein_coding	ZFP90	chr16	68530090	68530090	+	3994	44518	chr16:68574608:T:C	chr16	68574608	68574608	250	219.8	0.992457	248.007	2.23063e-09	0.133529	0.244091	0.0393251	0.000999001	5.63168e-06	7.48410564857538e-05	9.21497282246886e-06	ENSG00000184939-chr16:68574608:T:C	chr16:68626662:C:T	0.86	NA	0.885	0.389	+	NA	+	+	0.0884	UC	3994	1380	399	TRUE	TRUE	7.21222345411956e-05	2.164710518987e-06	0.190651193104431	0.809274519135071	87	chr16:68553789:T:A	PP.H4.abf	479	PP.H4.abf	0.782410561068612	417	PP.H4.abf	0.818287847584214
chr16:75463442:G:A	ENSG00000166822.13	protein_coding	TMEM170A	chr16	75465497	75465497	-	6940	2055	chr16:75463442:G:A	chr16	75463442	75463442	250	208.875	0.97868	437.853	1.45894e-13	0.19662	0.270063	0.0345255	0.000999001	9.48049e-09	2.03527440590071e-07	2.50457323447417e-06	ENSG00000166822-chr16:75463442:G:A	chr16:75463237:C:T	0.857	NA	0.697	0.993	+	NA	+	+	-0.0515	IBD	6940	2187	775	TRUE	TRUE	0.000506356586798969	1.83225736730519e-10	0.111627122078368	0.887866521150781	13	chr16:75470870:G:A	PP.H4.abf	857	PP.H4.abf	0.705359008404211	560	PP.H4.abf	0.812611691966686
chr16:75482738:G:T	ENSG00000261783.1	lncRNA	ENSG00000261783	chr16	75381260	75381260	-	6600	-101478	chr16:75482738:G:T	chr16	75482738	75482738	250	197.241	1.05256	338.375	3.81755e-07	0.0981819	-0.367598	0.0704606	0.002997	0.00155882	0.012133618707768	2.80865021751175e-06	ENSG00000261783-chr16:75482738:G:T	chr16:75463237:C:T	0.76	0.242	0.546	0.922	+	+	+	+	-0.0515	IBD	6600	2187	775	TRUE	TRUE	0.00187843020353038	0.0179996744771135	0.41683346212282	0.56320742840024	200	chr16:75482738:G:T	PP.H4.abf	857	PP.H3.abf	0.99458031170763	560	PP.H3.abf	0.646351759126293
chr17:1421287:CAAAGGA:C	ENSG00000167193.8	protein_coding	CRK	chr17	1463162	1463162	-	7111	41869	chr17:1421287:CAAAGGA:C	chr17	1421287	1421293	250	221.851	0.99598	986.89	1.01851e-10	0.1542	-0.160814	0.0238202	0.000999001	1.18955e-06	1.80530354259951e-05	2.1991519900677e-06	ENSG00000167193-chr17:1421287:CAAAGGA:C	chr17:1453285:C:A	0.687	0.598	0.474	0.589	+	+	+	+	0.0714	CD	7111	616	176	TRUE	TRUE	0.00147287171748622	6.81884535538286e-07	0.10174799146995	0.896778445143521	2	chr17:1453285:C:A	PP.H4.abf	225	PP.H3.abf	0.591348266297127	96	PP.H4.abf	0.81610417449901
chr17:40623690:G:A	ENSG00000264058.2	protein_coding	ENSG00000264058	chr17	40665141	40665141	-	5524	41451	chr17:40623690:G:A	chr17	40623690	40623690	250	201.77	1.02826	288.706	1.20985e-09	0.13766	-0.132604	0.0209905	0.000999001	9.90353e-06	0.000124625569429423	3.81833641105445e-06	ENSG00000264058-chr17:40623690:G:A	chr17:40619224:C:T	0.594	NA	0.413	NA	+	NA	+	NA	0.0922	UC	5524	1054	262	TRUE	TRUE	7.51023847844592e-10	2.2155237082509e-06	0.0638653683724877	0.936132415352756	2	chr17:40619224:C:T	PP.H4.abf	NA	NA	NA	NA	NA	NA
chr17:47281478:C:T	ENSG00000178852.16	protein_coding	EFCAB13	chr17	47323290	47323290	+	4123	-41812	chr17:47281478:C:T	chr17	47281478	47281478	250	200.208	1.0634	190.201	8.37707e-08	0.108719	-0.30723	0.0556351	0.000999001	0.000180845	0.00177564095860589	7.23270635871742e-06	ENSG00000178852-chr17:47281478:C:T	chr17:47259971:T:G	NA	NA	0.28	0.335	NA	NA	+	+	-0.0138	CD	4098	402	171	TRUE	TRUE	0.162807836803164	0.00104363920873286	0.128162587355432	0.706667448043318	1	chr17:47287024:ATTTGT:A	PP.H4.abf	196	PP.H3.abf	0.574948829126066	168	PP.H3.abf	0.543964146609502
chr17:47397157:G:A	ENSG00000228782.8	transcribed_unprocessed_pseudogene	MRPL45P2	chr17	47492492	47492492	-	4523	95335	chr17:47397157:G:A	chr17	47397157	47397157	250	199.707	1.0862	193.103	4.08342e-11	0.160239	0.353115	0.0511258	0.000999001	2.0129e-07	3.51620221933587e-06	7.86877734404445e-06	ENSG00000228782-chr17:47397157:G:A	chr17:47259971:T:G	NA	NA	NA	0.208	NA	NA	NA	-	-0.0138	CD	4523	402	171	FALSE	TRUE	0.217319628883641	0.0385522646647103	0.171493703291705	0.523929141198925	8	chr17:47254968:ATTAT:A	PP.H4.abf	196	PP.H3.abf	0.304138491796859	168	PP.H2.abf	0.454741783853974
chr19:18431190:GGTCCTGGTGACCACTGGTGCCTGA:G	ENSG00000175489.10	protein_coding	LRRC25	chr19	18397622	18397622	-	5824	-33568	chr19:18431190:GGTCCTGGTGACCACTGGTGCCTGA:G	chr19	18431190	18431214	250	202.039	1.05267	490.475	9.61668e-07	0.0917215	-0.215418	0.0428732	0.00599401	0.00386388	0.0267453086458084	2.34007853816554e-06	ENSG00000175489-chr19:18431190:GGTCCTGGTGACCACTGGTGCCTGA:G	chr19:18522945:T:C	0.634	0.486	0.751	0.94	+	+	+	+	0.0774	CD	5824	2189	701	TRUE	TRUE	0.000375784223298204	0.00181057783926693	0.153269635362288	0.844539587753555	55	chr19:18522945:T:C	PP.H4.abf	824	PP.H3.abf	0.99522364018776	674	PP.H3.abf	0.95336446013293
chr19:48703998:A:G	ENSG00000176920.13	protein_coding	FUT2	chr19	48695971	48695971	+	6927	8027	chr19:48703998:A:G	chr19	48703998	48703998	250	207.971	1.07737	565.553	8.16075e-37	0.474716	-0.612377	0.0407408	0.000999001	2.77244e-30	8.07355344378308e-28	3.15735244771354e-06	ENSG00000176920-chr19:48703998:A:G	chr19:48706594:A:G	0.951	0.564	0.931	1	+	+	+	+	0.1035	CD	6927	1245	496	TRUE	TRUE	2.55182848440203e-07	2.86330239844078e-42	0.368462952952971	0.631536791864175	1	chr19:48703998:A:G	PP.H4.abf	531	PP.H4.abf	0.980166853141269	314	PP.H4.abf	0.986627165118392
chr1:101124779:G:A	ENSG00000233184.8	lncRNA	ENSG00000233184	chr1	101025844	101025844	+	5907	98935	chr1:101124779:G:A	chr1	101124779	101124779	250	215.759	1.01041	414.007	2.70819e-07	0.100575	0.338682	0.064056	0.000999001	0.000680767	0.00581863924538784	4.69025796578926e-06	ENSG00000233184-chr1:101124779:G:A	chr1:101000498:C:T	0.622	0.372	0.462	0.268	+	+	+	+	0.0346	IBD	5907	1691	428	FALSE	TRUE	0.152546912919059	0.00603226464675795	0.071004977843428	0.757592957401726	19	chr1:101120491:A:T	PP.H4.abf	483	PP.H0.abf	0.524540667276186	321	PP.H4.abf	0.934745544344307
chr1:150642618:A:C	ENSG00000163131.12	protein_coding	CTSS	chr1	150765957	150765957	-	3619	123339	chr1:150642618:A:C	chr1	150642618	150642618	250	200.256	0.970762	176.296	1.78505e-08	0.119366	0.174449	0.0299679	0.000999001	0.000109869	0.00113267288930694	4.44834593593679e-06	ENSG00000163131-chr1:150642618:A:C	chr1:150706557:G:A	0.973	0.838	0.878	0.959	+	+	+	+	-0.0766	IBD	3619	3647	1025	TRUE	TRUE	7.7275378681277e-10	8.78620150860606e-06	0.0683982047795503	0.931593008246091	3	chr1:150706557:G:A	PP.H4.abf	1185	PP.H3.abf	0.999818152162693	869	PP.H3.abf	0.517377663105595
chr1:150673880:G:A	ENSG00000143452.16	protein_coding	HORMAD1	chr1	150720895	150720895	-	3555	47015	chr1:150673880:G:A	chr1	150673880	150673880	250	195.068	1.08756	176.725	4.22928e-08	0.113437	0.344974	0.0609947	0.000999001	0.000105809	0.00109400663997631	6.917994370359e-06	ENSG00000143452-chr1:150673880:G:A	chr1:150706557:G:A	0.998	0.738	0.958	0.995	+	+	+	+	-0.0766	IBD	3555	3647	1025	TRUE	TRUE	8.99946750226883e-10	6.14394499128411e-05	0.0798211578630753	0.92011740178638	3	chr1:150706557:G:A	PP.H4.abf	1185	PP.H4.abf	0.535240617395596	869	PP.H4.abf	0.886662830312341
chr1:205504644:T:C	ENSG00000117266.16	protein_coding	CDK18	chr1	205504596	205504596	+	5225	48	chr1:205504644:T:C	chr1	205504644	205504644	250	216.76	0.963769	508.029	4.82735e-10	0.143833	-0.296735	0.0457878	0.000999001	5.54958e-06	7.38928165378633e-05	2.92764287146419e-06	ENSG00000117266-chr1:205504644:T:C	chr1:205516162:T:A	0.915	0.221	0.795	0.603	+	+	+	+	0.0739	UC	5225	99	52	TRUE	TRUE	0.000196598205808411	1.76745795355129e-06	0.0125157524498271	0.987285856153014	2	chr1:205514945:G:A	PP.H4.abf	54	PP.H4.abf	0.985986032182226	49	PP.H4.abf	0.978618216596185
chr1:2551831:T:C	ENSG00000157873.18	protein_coding	TNFRSF14	chr1	2555639	2555639	+	5983	-3808	chr1:2551831:T:C	chr1	2551831	2551831	250	224.976	0.988342	829.304	9.80391e-08	0.10763	0.160141	0.0291634	0.000999001	0.000391435	0.00354910217464272	2.99872244580168e-06	ENSG00000157873-chr1:2551831:T:C	chr1:2557169:T:C	0.852	0.379	0.779	0.748	+	+	+	+	-0.0936	UC	5983	2452	594	TRUE	TRUE	6.29337677301061e-11	0.000274451794357102	0.0861218777801946	0.913603670362315	20	chr1:2551482:T:C	PP.H4.abf	719	PP.H2.abf	0.895797871471458	271	PP.H3.abf	0.578322907238625
chr1:7965215:C:T	ENSG00000116288.13	protein_coding	PARK7	chr1	7954291	7954291	+	5402	10924	chr1:7965215:C:T	chr1	7965215	7965215	250	207.41	1.07964	452.303	1.47109e-08	0.120691	0.146615	0.025029	0.000999001	5.25822e-05	0.000576671764624433	4.05012850368536e-06	ENSG00000116288-chr1:7965215:C:T	chr1:8035426:T:C	0.853	NA	0.568	NA	+	NA	+	NA	-0.1091	IBD	5402	3503	1212	TRUE	TRUE	2.30537578934108e-18	0.00047846429505001	0.45020263327465	0.5493189024303	22	chr1:7993075:A:G	PP.H4.abf	1352	PP.H3.abf	0.999999999998977	1023	PP.H3.abf	0.608640413788802
chr1:93380117:A:C	ENSG00000117505.13	protein_coding	DR1	chr1	93345907	93345907	+	4655	34210	chr1:93380117:A:C	chr1	93380117	93380117	250	221.509	1.06016	313.249	6.29642e-09	0.126486	-0.197142	0.0327661	0.000999001	7.13879e-06	9.2563586228244e-05	1.12230619027098e-05	ENSG00000117505-chr1:93380117:A:C	chr1:93349933:T:C	0.995	0.993	0.938	0.955	+	+	+	+	0.0839	CD	4655	3294	910	TRUE	TRUE	1.00379793598405e-06	8.09360255668536e-06	0.0901765237356771	0.909814378774636	21	chr1:93349933:T:C	PP.H4.abf	1187	PP.H4.abf	0.905970841940307	761	PP.H4.abf	0.953020262433488
chr20:14708500:T:C	ENSG00000125848.10	protein_coding	FLRT3	chr20	14337614	14337614	-	5415	-370886	chr20:14708500:T:C	chr20	14708500	14708500	250	199.28	1.13059	285.292	1.54509e-11	0.166618	0.498546	0.0705174	0.000999001	7.07551e-08	1.33184440428854e-06	6.01656630161429e-06	ENSG00000125848-chr20:14708500:T:C	chr20:14618543:C:A	0.644	NA	0.447	NA	+	NA	+	NA	-0.0896	CD	5415	1289	473	TRUE	TRUE	0.000125594702912979	1.1504909344251e-06	0.118108778718792	0.881764474873014	5	chr20:14708172:G:A	PP.H4.abf	516	PP.H4.abf	0.856278145020379	426	PP.H4.abf	0.902527636062716
chr20:41329447:T:G	ENSG00000183798.5	protein_coding	EMILIN3	chr20	41366818	41366818	-	5283	37371	chr20:41329447:T:G	chr20	41329447	41329447	250	210.095	1.02382	390.764	2.45552e-06	0.0851364	0.296196	0.0614088	0.00799201	0.00536322	0.0351665812682193	4.04995503178185e-06	ENSG00000183798-chr20:41329447:T:G	chr20:41301389:T:G	0.839	0.919	1	1	+	+	+	+	0.0733	IBD	5283	4660	1152	TRUE	TRUE	0.000111181155243813	0.00169765445528022	0.0646203839174343	0.933567901207278	25	chr20:41301389:T:G	PP.H4.abf	1394	PP.H3.abf	0.998232592571854	1073	PP.H3.abf	0.960640181831227
chr20:6108346:A:G	ENSG00000101311.16	protein_coding	FERMT1	chr20	6123030	6123030	-	7235	14684	chr20:6108346:A:G	chr20	6108346	6108346	250	221.436	0.985785	779.435	1.29663e-07	0.105693	-0.253448	0.0466273	0.001998	0.000590504	0.00513401189747614	2.638819765588e-06	ENSG00000101311-chr20:6108346:A:G	chr20:6113242:T:G	0.576	NA	0.762	0.737	+	NA	+	+	0.0594	IBD	7235	345	171	TRUE	TRUE	0.00273369389049355	0.00490737245571189	0.446517652700214	0.545811273459831	8	chr20:6108297:A:G	PP.H4.abf	179	PP.H3.abf	0.985296307856256	164	PP.H3.abf	0.990329804617365
chr21:33491977:T:C	ENSG00000159128.15	protein_coding	IFNGR2	chr21	33403413	33403413	+	5128	88564	chr21:33491977:T:C	chr21	33491977	33491977	250	209.9	1.02978	456.275	1.82262e-06	0.0872333	-0.244478	0.0500159	0.004995	0.00474166	0.0317555721004436	3.45634921372628e-06	ENSG00000159128-chr21:33491977:T:C	chr21:33404389:A:G	NA	NA	NA	0.266	NA	NA	NA	-	0.1096	CD	5128	2433	617	TRUE	TRUE	6.36206047174123e-13	0.000930538056781138	0.0159289460830915	0.983140515859455	1	chr21:33404389:A:G	PP.H4.abf	729	PP.H3.abf	0.953604576264052	487	PP.H3.abf	0.999999796815522
chr21:44057275:A:G	ENSG00000241945.8	protein_coding	PWP2	chr21	44107373	44107373	+	5615	-50098	chr21:44057275:A:G	chr21	44057275	44057275	250	211.255	1.03787	542.35	1.28361e-36	0.472817	1.05263	0.0702977	0.000999001	1.6133e-29	4.29391733551074e-27	3.17757597811941e-06	ENSG00000241945-chr21:44057275:A:G	chr21:44057275:A:G	NA	NA	NA	NA	NA	NA	NA	NA	-0.078	IBD	5600	739	192	TRUE	TRUE	1.67387889845361e-06	7.12547449152461e-39	0.00420806715859902	0.995790258962506	2	chr21:44057275:A:G	PP.H4.abf	233	PP.H3.abf	0.985595795132277	196	PP.H2.abf	0.525798600915651
chr21:44074302:G:A	ENSG00000160221.18	protein_coding	GATD3A	chr21	44133610	44133610	+	5670	-59308	chr21:44074302:G:A	chr21	44074302	44074302	250	221.729	1.04296	737.227	1.41277e-41	0.518659	1.04639	0.0637541	0.000999001	1.22032e-35	6.29294572030095e-33	3.95753270532317e-06	ENSG00000160221-chr21:44074302:G:A	chr21:44057275:A:G	0.996	0.889	0.962	0.973	+	+	+	+	-0.078	IBD	5669	739	206	TRUE	TRUE	2.40090981010383e-06	2.52392281075045e-48	0.0064706207045805	0.993526978385608	3	chr21:44057275:A:G	PP.H4.abf	233	PP.H3.abf	0.992993791833847	196	PP.H2.abf	0.906735221656535
chr2:198747402:GA:G	ENSG00000225421.2	lncRNA	ENSG00000225421	chr2	198772356	198772356	-	4054	24953	chr2:198747402:GA:G	chr2	198747402	198747403	250	204.688	1.06759	226.9	5.01367e-06	0.0801033	0.191399	0.0410217	0.003996	0.00577749	0.0374742494828724	7.53553782417704e-06	ENSG00000225421-chr2:198747402:GA:G	chr2:198719455:A:G	0.264	NA	NA	0.304	+	NA	NA	+	0.1043	UC	4054	5992	1592	TRUE	TRUE	1.2700177128062e-14	0.0449612202439029	0.150907096869607	0.804131682886471	1	chr2:198719455:A:G	PP.H4.abf	1811	PP.H2.abf	0.790612205552427	1138	PP.H2.abf	0.906917408268324
chr2:218270205:A:G	ENSG00000261338.2	lncRNA	ENSG00000261338	chr2	218255319	218255319	+	5000	14886	chr2:218270205:A:G	chr2	218270205	218270205	250	215.344	1.04928	408.353	1.20819e-12	0.183141	-0.507391	0.0677725	0.000999001	7.16585e-09	1.57246181293984e-07	5.82847476460202e-06	ENSG00000261338-chr2:218270205:A:G	chr2:218152739:A:G	0.386	NA	NA	0.225	+	NA	NA	+	0.0801	IBD	5000	2248	703	TRUE	TRUE	9.77160619428933e-13	3.13661946496391e-07	0.378471398581815	0.621528287755259	7	chr2:218270205:A:G	PP.H4.abf	757	PP.H3.abf	0.999160836922118	586	PP.H3.abf	0.998014580077424
chr4:122108432:C:T	ENSG00000138688.17	protein_coding	KIAA1109	chr4	122152331	122152331	+	6154	-43899	chr4:122108432:C:T	chr4	122108432	122108432	250	196.619	0.999106	280.354	3.18988e-08	0.115379	-0.152947	0.0267846	0.001998	0.000265981	0.00251960637699346	2.45187291636473e-06	ENSG00000138688-chr4:122108432:C:T	chr4:122523884:G:GT	0.437	NA	NA	NA	+	NA	NA	NA	0.0827	IBD	6154	3893	1076	TRUE	TRUE	4.19984947256625e-14	0.000206340439176555	0.190585673520299	0.809207986040482	30	chr4:122523884:G:GT	PP.H4.abf	1336	PP.H3.abf	0.523466791035632	1090	PP.H4.abf	0.513792485834511
chr4:74007885:T:C	ENSG00000287037.1	lncRNA	ENSG00000287037	chr4	73997933	73997933	+	4859	9952	chr4:74007885:T:C	chr4	74007885	74007885	250	213.44	1.03483	286.278	3.67583e-06	0.0822937	-0.433073	0.091466	0.002997	0.00445554	0.0300589723737513	7.37815277784826e-06	ENSG00000287037-chr4:74007885:T:C	chr4:73991991:A:G	0.569	NA	NA	NA	+	NA	NA	NA	0.0633	UC	4859	734	207	TRUE	TRUE	0.000230142664466248	0.100765212479482	0.0557283981540961	0.842866314650704	21	chr4:74007885:T:C	PP.H4.abf	NA	NA	NA	NA	NA	NA
chr4:74007885:T:C	ENSG00000163735.7	protein_coding	CXCL5	chr4	73998677	73998677	-	4860	-9208	chr4:74007885:T:C	chr4	74007885	74007885	250	221.143	1.00911	313.867	7.67121e-07	0.0933048	-0.45893	0.0904806	0.001998	0.000979701	0.00806994489337128	8.30241275473487e-06	ENSG00000163735-chr4:74007885:T:C	chr4:73991991:A:G	0.569	NA	NA	NA	+	NA	NA	NA	0.0633	UC	4860	734	207	TRUE	TRUE	0.000217803326290188	0.0241755798937762	0.0526152442998998	0.922893021622508	22	chr4:74007885:T:C	PP.H4.abf	246	PP.H4.abf	0.966875307407532	184	PP.H4.abf	0.975213090844921
chr5:132254694:T:C	ENSG00000072682.20	protein_coding	P4HA2	chr5	132295315	132295315	-	4103	40621	chr5:132254694:T:C	chr5	132254694	132254694	250	197.62	1.00017	174.547	1.45243e-07	0.104906	0.159933	0.0295463	0.000999001	0.000514652	0.00454801669360766	4.74163628294555e-06	ENSG00000072682-chr5:132254694:T:C	chr5:132435113:C:T	0.769	0.733	0.808	0.833	+	+	+	+	0.1254	IBD	4103	21449	2708	TRUE	TRUE	5.05679171003087e-27	0.00054534023323915	0.223237942094017	0.776216717672737	16	chr5:132295159:A:C	PP.H4.abf	3167	PP.H3.abf	0.911410422373082	2457	PP.H3.abf	0.999983860681565
chr5:177371039:T:G	ENSG00000169220.18	protein_coding	RGS14	chr5	177357924	177357924	+	4942	13115	chr5:177371039:T:G	chr5	177371039	177371039	250	206.702	1.03731	446.172	1.97889e-13	0.19469	-0.30037	0.0386364	0.000999001	5.2101e-09	1.16920870648401e-07	3.11881715120421e-06	ENSG00000169220-chr5:177371039:T:G	chr5:177372991:T:C	0.982	0.738	0.949	0.815	+	+	+	+	0.0753	IBD	4942	425	100	TRUE	TRUE	2.30190831903022e-10	1.88263272140403e-10	0.00988358607884856	0.990116413502695	2	chr5:177372991:T:C	PP.H4.abf	123	PP.H4.abf	0.991251363697825	88	PP.H4.abf	0.999458942123034
chr5:178213863:A:G	ENSG00000197451.12	protein_coding	HNRNPAB	chr5	178204533	178204533	+	6608	9330	chr5:178213863:A:G	chr5	178213863	178213863	250	224.719	1.04732	859.05	3.26236e-20	0.288197	-0.378599	0.037631	0.000999001	4.30071e-16	2.45285526879303e-14	3.96542511649223e-06	ENSG00000197451-chr5:178213863:A:G	chr5:178217126:CAG:C	0.764	0.973	0.879	0.601	+	+	+	+	-0.1443	UC	6608	299	133	TRUE	TRUE	0.000782335199772706	1.95308754558336e-17	0.497164581749782	0.502053083050444	3	chr5:178213863:A:G	PP.H4.abf	152	PP.H3.abf	0.549392283516861	111	PP.H4.abf	0.580631193196322
chr5:599081:C:T	ENSG00000225138.8	lncRNA	SLC9A3-AS1	chr5	473236	473236	+	4960	125845	chr5:599081:C:T	chr5	599081	599081	250	200.476	1.09206	332.883	9.28509e-07	0.0919674	0.199532	0.0396531	0.000999001	0.00213572	0.0159808659228057	4.31758609464872e-06	ENSG00000225138-chr5:599081:C:T	chr5:573904:G:A	0.901	0.963	0.848	0.211	+	+	+	+	-0.1108	UC	4960	2677	670	TRUE	TRUE	0.000270629684044333	0.00209012637805325	0.186551124243221	0.811085100674766	74	chr5:645447:C:T	PP.H4.abf	1088	PP.H4.abf	0.883569920297561	641	PP.H3.abf	0.843781158705093
chr5:96916728:G:A	ENSG00000164308.17	protein_coding	ERAP2	chr5	96875986	96875986	+	6187	40742	chr5:96916728:G:A	chr5	96916728	96916728	250	208.594	1.02213	293.392	5.19664e-60	0.65693	0.996757	0.0455566	0.000999001	6.21846e-49	3.07846581176316e-45	5.2053077774783e-06	ENSG00000164308-chr5:96916728:G:A	chr5:96912106:T:C	0.931	0.732	0.508	0.576	-	-	-	-	-0.1115	CD	6187	1505	563	TRUE	TRUE	9.05490295436967e-11	3.76710465079384e-92	0.325396322596891	0.674603677312574	2	chr5:96916885:T:C	PP.H4.abf	648	PP.H4.abf	0.666157877279151	504	PP.H4.abf	0.85424909217958
chr6:32592938:G:A	ENSG00000229391.7	transcribed_unprocessed_pseudogene	HLA-DRB6	chr6	32560022	32560022	-	15103	-32916	chr6:32592938:G:A	chr6	32592938	32592938	250	197.07	1.03032	302.392	1.13907e-35	0.463571	0.900581	0.0612704	0.000999001	9.44371e-27	1.88513497554095e-24	2.79623059351586e-06	ENSG00000229391-chr6:32592938:G:A	chr6:32621706:G:A	0.99	0.832	0.98	0.957	+	+	+	+	-0.3463	UC	14795	149275	14607	TRUE	TRUE	3.0687756881881e-151	1.15640392169703e-38	0.287578868935126	0.712421131064882	4	chr6:32621891:C:A	PP.H4.abf	18085	PP.H3.abf	0.999950582860279	11960	PP.H3.abf	1
chr6:32619340:C:G	ENSG00000196735.13	protein_coding	HLA-DQA1	chr6	32628179	32628179	+	15163	-8839	chr6:32619340:C:G	chr6	32619340	32619340	250	186.182	1.13136	266.781	4.1543e-39	0.496355	-0.715025	0.0455531	0.000999001	1.31922e-30	3.98221650928925e-28	3.10780441159508e-06	ENSG00000196735-chr6:32619340:C:G	chr6:32621706:G:A	0.947	0.865	0.99	1	+	+	+	+	-0.3463	UC	15082	149275	14890	TRUE	TRUE	1.68816650672775e-152	7.83789247731251e-47	0.0157780837649942	0.984221916234991	3	chr6:32619340:C:G	PP.H4.abf	18150	PP.H3.abf	1	12018	PP.H3.abf	1
chr6:32636048:C:T	ENSG00000196126.11	protein_coding	HLA-DRB1	chr6	32589848	32589848	-	15124	-46200	chr6:32636048:C:T	chr6	32636048	32636048	250	195.374	1.02275	277.567	4.27099e-18	0.260185	-0.425047	0.0453302	0.000999001	2.75032e-12	9.75324869842479e-11	2.68971891947967e-06	ENSG00000196126-chr6:32636048:C:T	chr6:32621706:G:A	0.727	0.329	0.638	0.435	+	+	+	+	-0.3463	UC	14557	149275	14366	TRUE	TRUE	7.16770184249687e-152	7.61728487937564e-15	0.0671340518481598	0.932865948151845	4	chr6:32621891:C:A	PP.H4.abf	18098	PP.H3.abf	0.91783944623866	11985	PP.H3.abf	1
chr7:128936032:T:C	ENSG00000128604.20	protein_coding	IRF5	chr7	128937457	128937457	+	5734	-1425	chr7:128936032:T:C	chr7	128936032	128936032	250	208.582	1.03564	374.661	3.28334e-21	0.301034	0.460258	0.0443559	0.000999001	6.61876e-16	3.65695918889827e-14	4.21220923896293e-06	ENSG00000128604-chr7:128936032:T:C	chr7:128936032:T:C	NA	NA	NA	NA	NA	NA	NA	NA	0.1038	UC	5734	1095	347	TRUE	TRUE	5.07705796846458e-14	1.39312468166745e-20	0.00228766548155328	0.997712334518393	2	chr7:128936032:T:C	PP.H4.abf	394	PP.H4.abf	0.99852084276926	301	PP.H4.abf	0.99949634740444
chr7:37412043:A:C	ENSG00000155849.16	protein_coding	ELMO1	chr7	37449223	37449223	-	6745	37180	chr7:37412043:A:C	chr7	37412043	37412043	250	197.778	1.11761	464.394	6.01403e-16	0.230675	0.381935	0.0441138	0.000999001	2.11272e-11	6.67033084105452e-10	2.81380945965637e-06	ENSG00000155849-chr7:37412043:A:C	chr7:37417880:A:G	0.641	0.972	0.847	0.996	+	+	+	+	0.1341	CD	6745	275	153	TRUE	TRUE	2.63953248947192e-07	4.25243717290222e-13	0.409053594081098	0.590946141965229	33	chr7:37418330:A:C	PP.H4.abf	157	PP.H4.abf	0.618147343410502	137	PP.H4.abf	0.595732587555159
chr8:48474703:C:T	ENSG00000233858.4	lncRNA	LINC02599	chr8	48590401	48590401	+	4135	-115698	chr8:48474703:C:T	chr8	48474703	48474703	250	203.76	1.04222	184.217	1.3591e-08	0.121233	-0.263918	0.0449393	0.000999001	3.54977e-05	0.00040356346750352	7.99528855421894e-06	ENSG00000233858-chr8:48474703:C:T	chr8:48207903:G:T	0.266	NA	NA	NA	+	NA	NA	NA	-0.1041	UC	4135	1224	473	FALSE	TRUE	2.80773338400346e-05	0.026246758467759	0.16641025222235	0.807310504909067	122	chr8:48207903:G:T	PP.H4.abf	NA	NA	NA	410	PP.H3.abf	0.992337983212111
chr9:133257521:T:TC	ENSG00000175164.16	protein_coding	ABO	chr9	133276024	133276024	-	7638	18503	chr9:133257521:T:TC	chr9	133257521	133257521	250	215.454	1.07624	851.708	3.64116e-41	0.515013	0.671197	0.0411941	0.000999001	3.1164e-35	1.48344464826975e-32	2.90325536433933e-06	ENSG00000175164-chr9:133257521:T:TC	chr9:133257521:T:TC	NA	NA	NA	NA	NA	NA	NA	NA	0.0808	CD	7618	469	266	TRUE	TRUE	1.57960819290885e-06	1.86629486808865e-52	0.000991870723452063	0.999006549668352	1	chr9:133257521:T:TC	PP.H4.abf	295	PP.H3.abf	0.999128644723462	172	PP.H3.abf	0.973401157361729
chr9:264265:A:G	ENSG00000183784.7	lncRNA	DOCK8-AS1	chr9	215893	215893	-	5813	-48372	chr9:264265:A:G	chr9	264265	264265	250	193.25	1.0084	311.183	1.05935e-07	0.107094	0.322546	0.0589037	0.001998	0.000868868	0.00721946131390489	1.86465798757141e-06	ENSG00000183784-chr9:264265:A:G	chr9:271455:T:C	0.685	NA	0.774	0.836	+	NA	+	+	-0.0797	CD	5813	632	322	TRUE	TRUE	0.00281720167028638	0.00302034898891686	0.444723025066666	0.549420314777676	36	chr9:265469:T:G	PP.H4.abf	344	PP.H4.abf	0.947011241587441	293	PP.H3.abf	0.894196270480719