<?xml version="1.0" standalone="yes"?>

<!-- Generated by BEAUTi v1.8.2                                              -->
<!--       by Alexei J. Drummond, Andrew Rambaut and Marc A. Suchard         -->
<!--       Department of Computer Science, University of Auckland and        -->
<!--       Institute of Evolutionary Biology, University of Edinburgh        -->
<!--       David Geffen School of Medicine, University of California, Los Angeles-->
<!--       http://beast.bio.ed.ac.uk/                                        -->
<beast>

	<!-- The list of taxa to be analysed (can also include dates/ages).          -->
	<!-- ntax=40                                                                 -->
	<taxa id="taxa">
		<taxon id="NC_023948_c._amblyrhynchoides"/>
		<taxon id="KR135836_c._limbatus"/>
		<taxon id="NC_026871_c._tjutjot"/>
		<taxon id="KF801102_c._falciformis"/>
		<taxon id="KF612341_c._sorrah_cr"/>
		<taxon id="HQ324916_c._leucas"/>
		<taxon id="KM657090_c._acronotus"/>
		<taxon id="NC_027081_c._brevipinna"/>
		<taxon id="NC_024284_c._melanopterus"/>
		<taxon id="KM921745_c._amboinensis"/>
		<taxon id="KJ865755_c._macloti"/>
		<taxon id="NC_025520_c._longimanus"/>
		<taxon id="NC_020611_c._obscurus"/>
		<taxon id="FJ008709_n._brevirostris"/>
		<taxon id="NC_024596_c._plumbeus"/>
		<taxon id="NC_021768_g._glyphis"/>
		<taxon id="KF646786_g._garricki_cr"/>
		<taxon id="KJ748376_t._obesus_cr"/>
		<taxon id="HM446216_r._lalandii"/>
		<taxon id="HM802351_r._terraenovae"/>
		<taxon id="KM987566_r._porosus"/>
		<taxon id="KR232957_r._acutus_extraction_(reversed)"/>
		<taxon id="FJ008698_n._acutidens"/>
		<taxon id="JN983457_m._albipinnis_(modified)"/>
		<taxon id="JN983458_m._henlei_(modified)"/>
		<taxon id="JN983466_m._californicus_(modified)"/>
		<taxon id="JN983465_m._lunulatus_(modified)"/>
		<taxon id="KF889325_m._griseus"/>
		<taxon id="NC_000890_m._manazo"/>
		<taxon id="NC_026774_h._japonica_cr"/>
		<taxon id="EU395710_g._galeus_(modified)"/>
		<taxon id="KP336547_s._laticaudus_cr"/>
		<taxon id="NC_018052_s._macrorhyncos"/>
		<taxon id="JQ729063_g._melastomus"/>
		<taxon id="KF111729_cr_o._japonicus"/>
		<taxon id="NC_001950_s._canicula_cr"/>
		<taxon id="EU182401_extraction_(reversed)"/>
		<taxon id="NC_016686_c._punctatum_cr"/>
		<taxon id="NC_017882_c._griseum_cr"/>
		<taxon id="JX162601_c._plagiosum_cr"/>
	</taxa>
	<taxa id="Carcharhiniformes">
		<taxon idref="EU395710_g._galeus_(modified)"/>
		<taxon idref="FJ008698_n._acutidens"/>
		<taxon idref="FJ008709_n._brevirostris"/>
		<taxon idref="HM446216_r._lalandii"/>
		<taxon idref="HM802351_r._terraenovae"/>
		<taxon idref="HQ324916_c._leucas"/>
		<taxon idref="JN983457_m._albipinnis_(modified)"/>
		<taxon idref="JN983458_m._henlei_(modified)"/>
		<taxon idref="JN983465_m._lunulatus_(modified)"/>
		<taxon idref="JN983466_m._californicus_(modified)"/>
		<taxon idref="JQ729063_g._melastomus"/>
		<taxon idref="KF612341_c._sorrah_cr"/>
		<taxon idref="KF646786_g._garricki_cr"/>
		<taxon idref="KF801102_c._falciformis"/>
		<taxon idref="KF889325_m._griseus"/>
		<taxon idref="KJ748376_t._obesus_cr"/>
		<taxon idref="KJ865755_c._macloti"/>
		<taxon idref="KM657090_c._acronotus"/>
		<taxon idref="KM921745_c._amboinensis"/>
		<taxon idref="KM987566_r._porosus"/>
		<taxon idref="KP336547_s._laticaudus_cr"/>
		<taxon idref="KR135836_c._limbatus"/>
		<taxon idref="KR232957_r._acutus_extraction_(reversed)"/>
		<taxon idref="NC_000890_m._manazo"/>
		<taxon idref="NC_001950_s._canicula_cr"/>
		<taxon idref="NC_018052_s._macrorhyncos"/>
		<taxon idref="NC_020611_c._obscurus"/>
		<taxon idref="NC_021768_g._glyphis"/>
		<taxon idref="NC_023948_c._amblyrhynchoides"/>
		<taxon idref="NC_024284_c._melanopterus"/>
		<taxon idref="NC_024596_c._plumbeus"/>
		<taxon idref="NC_025520_c._longimanus"/>
		<taxon idref="NC_026774_h._japonica_cr"/>
		<taxon idref="NC_026871_c._tjutjot"/>
		<taxon idref="NC_027081_c._brevipinna"/>
	</taxa>
	<taxa id="Car_Ore">
		<taxon idref="EU182401_extraction_(reversed)"/>
		<taxon idref="EU395710_g._galeus_(modified)"/>
		<taxon idref="FJ008698_n._acutidens"/>
		<taxon idref="FJ008709_n._brevirostris"/>
		<taxon idref="HM446216_r._lalandii"/>
		<taxon idref="HM802351_r._terraenovae"/>
		<taxon idref="HQ324916_c._leucas"/>
		<taxon idref="JN983457_m._albipinnis_(modified)"/>
		<taxon idref="JN983458_m._henlei_(modified)"/>
		<taxon idref="JN983465_m._lunulatus_(modified)"/>
		<taxon idref="JN983466_m._californicus_(modified)"/>
		<taxon idref="JQ729063_g._melastomus"/>
		<taxon idref="JX162601_c._plagiosum_cr"/>
		<taxon idref="KF111729_cr_o._japonicus"/>
		<taxon idref="KF612341_c._sorrah_cr"/>
		<taxon idref="KF646786_g._garricki_cr"/>
		<taxon idref="KF801102_c._falciformis"/>
		<taxon idref="KF889325_m._griseus"/>
		<taxon idref="KJ748376_t._obesus_cr"/>
		<taxon idref="KJ865755_c._macloti"/>
		<taxon idref="KM657090_c._acronotus"/>
		<taxon idref="KM921745_c._amboinensis"/>
		<taxon idref="KM987566_r._porosus"/>
		<taxon idref="KP336547_s._laticaudus_cr"/>
		<taxon idref="KR135836_c._limbatus"/>
		<taxon idref="KR232957_r._acutus_extraction_(reversed)"/>
		<taxon idref="NC_000890_m._manazo"/>
		<taxon idref="NC_001950_s._canicula_cr"/>
		<taxon idref="NC_016686_c._punctatum_cr"/>
		<taxon idref="NC_017882_c._griseum_cr"/>
		<taxon idref="NC_018052_s._macrorhyncos"/>
		<taxon idref="NC_020611_c._obscurus"/>
		<taxon idref="NC_021768_g._glyphis"/>
		<taxon idref="NC_023948_c._amblyrhynchoides"/>
		<taxon idref="NC_024284_c._melanopterus"/>
		<taxon idref="NC_024596_c._plumbeus"/>
		<taxon idref="NC_025520_c._longimanus"/>
		<taxon idref="NC_026774_h._japonica_cr"/>
		<taxon idref="NC_026871_c._tjutjot"/>
		<taxon idref="NC_027081_c._brevipinna"/>
	</taxa>
	<taxa id="Orectolobiformes">
		<taxon idref="EU182401_extraction_(reversed)"/>
		<taxon idref="JX162601_c._plagiosum_cr"/>
		<taxon idref="KF111729_cr_o._japonicus"/>
		<taxon idref="NC_016686_c._punctatum_cr"/>
		<taxon idref="NC_017882_c._griseum_cr"/>
	</taxa>
	<taxa id="Hemi_Rhin">
		<taxon idref="EU182401_extraction_(reversed)"/>
		<taxon idref="JX162601_c._plagiosum_cr"/>
		<taxon idref="NC_016686_c._punctatum_cr"/>
		<taxon idref="NC_017882_c._griseum_cr"/>
	</taxa>

	<!-- The sequence alignment (each sequence refers to a taxon above).         -->
	<!-- ntax=40 nchar=292                                                       -->

	<!-- Null sequences generated in order to sample from the prior only.        -->
	<alignment id="alignment" dataType="nucleotide">
		<sequence>
			<taxon idref="NC_023948_c._amblyrhynchoides"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KR135836_c._limbatus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_026871_c._tjutjot"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KF801102_c._falciformis"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KF612341_c._sorrah_cr"/>
			???
		</sequence>
		<sequence>
			<taxon idref="HQ324916_c._leucas"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KM657090_c._acronotus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_027081_c._brevipinna"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_024284_c._melanopterus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KM921745_c._amboinensis"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KJ865755_c._macloti"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_025520_c._longimanus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_020611_c._obscurus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="FJ008709_n._brevirostris"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_024596_c._plumbeus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_021768_g._glyphis"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KF646786_g._garricki_cr"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KJ748376_t._obesus_cr"/>
			???
		</sequence>
		<sequence>
			<taxon idref="HM446216_r._lalandii"/>
			???
		</sequence>
		<sequence>
			<taxon idref="HM802351_r._terraenovae"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KM987566_r._porosus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KR232957_r._acutus_extraction_(reversed)"/>
			???
		</sequence>
		<sequence>
			<taxon idref="FJ008698_n._acutidens"/>
			???
		</sequence>
		<sequence>
			<taxon idref="JN983457_m._albipinnis_(modified)"/>
			???
		</sequence>
		<sequence>
			<taxon idref="JN983458_m._henlei_(modified)"/>
			???
		</sequence>
		<sequence>
			<taxon idref="JN983466_m._californicus_(modified)"/>
			???
		</sequence>
		<sequence>
			<taxon idref="JN983465_m._lunulatus_(modified)"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KF889325_m._griseus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_000890_m._manazo"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_026774_h._japonica_cr"/>
			???
		</sequence>
		<sequence>
			<taxon idref="EU395710_g._galeus_(modified)"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KP336547_s._laticaudus_cr"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_018052_s._macrorhyncos"/>
			???
		</sequence>
		<sequence>
			<taxon idref="JQ729063_g._melastomus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="KF111729_cr_o._japonicus"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_001950_s._canicula_cr"/>
			???
		</sequence>
		<sequence>
			<taxon idref="EU182401_extraction_(reversed)"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_016686_c._punctatum_cr"/>
			???
		</sequence>
		<sequence>
			<taxon idref="NC_017882_c._griseum_cr"/>
			???
		</sequence>
		<sequence>
			<taxon idref="JX162601_c._plagiosum_cr"/>
			???
		</sequence>
	</alignment>

	<!-- A prior on the distribution node heights defined given                  -->

	<!-- Stadler, T; On incomplete sampling under birth-death models and connections to the sampling-based coalescent;
JOURNAL OF THEORETICAL BIOLOGY (2009) 261:58-66-->
	<birthDeathModel id="birthDeath" units="years">
		<birthMinusDeathRate>
			<parameter id="birthDeath.meanGrowthRate" value="0.1" lower="0.0"/>
		</birthMinusDeathRate>
		<relativeDeathRate>
			<parameter id="birthDeath.relativeDeathRate" value="0.5" lower="0.0"/>
		</relativeDeathRate>
		<sampleProbability>
			<parameter id="birthDeath.sampleProbability" value="0.1" lower="0.0" upper="1.0"/>
		</sampleProbability>
	</birthDeathModel>

	<!-- This is a simple constant population size coalescent model              -->
	<!-- that is used to generate an initial tree for the chain.                 -->
	<constantSize id="initialDemo" units="years">
		<populationSize>
			<parameter id="initialDemo.popSize" value="100.0"/>
		</populationSize>
	</constantSize>

	<!-- Generate a random starting tree under the coalescent process            -->
	<coalescentSimulator id="startingTree">
		<coalescentSimulator height="270.0">
			<coalescentSimulator height="175.6">
				<taxa idref="Carcharhiniformes"/>
				<constantSize idref="initialDemo"/>
			</coalescentSimulator>
			<coalescentSimulator>
				<coalescentSimulator height="175.6">
					<taxa idref="Hemi_Rhin"/>
					<constantSize idref="initialDemo"/>
				</coalescentSimulator>
				<taxa idref="Orectolobiformes"/>
				<constantSize idref="initialDemo"/>
			</coalescentSimulator>
			<taxa idref="Car_Ore"/>
			<constantSize idref="initialDemo"/>
		</coalescentSimulator>
		<taxa idref="taxa"/>
		<constantSize idref="initialDemo"/>
	</coalescentSimulator>

	<!-- Generate a tree model                                                   -->
	<treeModel id="treeModel">
		<coalescentTree idref="startingTree"/>
		<rootHeight>
			<parameter id="treeModel.rootHeight"/>
		</rootHeight>
		<nodeHeights internalNodes="true">
			<parameter id="treeModel.internalNodeHeights"/>
		</nodeHeights>
		<nodeHeights internalNodes="true" rootNode="true">
			<parameter id="treeModel.allInternalNodeHeights"/>
		</nodeHeights>
	</treeModel>

	<!-- Taxon Sets                                                              -->
	<tmrcaStatistic id="tmrca(Carcharhiniformes)" includeStem="false">
		<mrca>
			<taxa idref="Carcharhiniformes"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<monophylyStatistic id="monophyly(Carcharhiniformes)">
		<mrca>
			<taxa idref="Carcharhiniformes"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</monophylyStatistic>
	<tmrcaStatistic id="tmrca(Car_Ore)" includeStem="false">
		<mrca>
			<taxa idref="Car_Ore"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<monophylyStatistic id="monophyly(Car_Ore)">
		<mrca>
			<taxa idref="Car_Ore"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</monophylyStatistic>
	<tmrcaStatistic id="tmrca(Orectolobiformes)" includeStem="false">
		<mrca>
			<taxa idref="Orectolobiformes"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<monophylyStatistic id="monophyly(Orectolobiformes)">
		<mrca>
			<taxa idref="Orectolobiformes"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</monophylyStatistic>
	<tmrcaStatistic id="tmrca(Hemi_Rhin)" includeStem="false">
		<mrca>
			<taxa idref="Hemi_Rhin"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<monophylyStatistic id="monophyly(Hemi_Rhin)">
		<mrca>
			<taxa idref="Hemi_Rhin"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</monophylyStatistic>

	<!-- Generate a speciation likelihood for Yule or Birth Death                -->
	<speciationLikelihood id="speciation">
		<model>
			<birthDeathModel idref="birthDeath"/>
		</model>
		<speciesTree>
			<treeModel idref="treeModel"/>
		</speciesTree>
	</speciationLikelihood>

	<!-- The uncorrelated relaxed clock (Drummond, Ho, Phillips & Rambaut (2006) PLoS Biology 4, e88 )-->
	<discretizedBranchRates id="branchRates">
		<treeModel idref="treeModel"/>
		<distribution>
			<logNormalDistributionModel meanInRealSpace="true">
				<mean>
					<parameter id="ucld.mean" value="0.005" lower="0.0"/>
				</mean>
				<stdev>
					<parameter id="ucld.stdev" value="0.3333333333333333" lower="0.0"/>
				</stdev>
			</logNormalDistributionModel>
		</distribution>
		<rateCategories>
			<parameter id="branchRates.categories"/>
		</rateCategories>
	</discretizedBranchRates>
	<rateStatistic id="meanRate" name="meanRate" mode="mean" internal="true" external="true">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateStatistic>
	<rateStatistic id="coefficientOfVariation" name="coefficientOfVariation" mode="coefficientOfVariation" internal="true" external="true">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateStatistic>
	<rateCovarianceStatistic id="covariance" name="covariance">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateCovarianceStatistic>

	<!-- The TN93 substitution model                                             -->
	<TN93Model id="tn93">
		<frequencies>
			<frequencyModel dataType="nucleotide">
				<frequencies>
					<parameter id="frequencies" value="0.25 0.25 0.25 0.25"/>
				</frequencies>
			</frequencyModel>
		</frequencies>
		<kappa1>
			<parameter id="kappa1" value="2.0" lower="0.0"/>
		</kappa1>
		<kappa2>
			<parameter id="kappa2" value="2.0" lower="0.0"/>
		</kappa2>
	</TN93Model>

	<!-- site model                                                              -->
	<siteModel id="siteModel">
		<substitutionModel>
			<TN93Model idref="tn93"/>
		</substitutionModel>
		<gammaShape gammaCategories="4">
			<parameter id="alpha" value="0.5" lower="0.0"/>
		</gammaShape>
	</siteModel>

	<!-- Likelihood for tree given sequence data                                 -->
	<treeLikelihood id="treeLikelihood" useAmbiguities="false">
		<alignment idref="alignment"/>
		<treeModel idref="treeModel"/>
		<siteModel idref="siteModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</treeLikelihood>

	<!-- Define operators                                                        -->
	<operators id="operators" optimizationSchedule="default">
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="kappa1"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="kappa2"/>
		</scaleOperator>
		<deltaExchange delta="0.01" weight="0.1">
			<parameter idref="frequencies"/>
		</deltaExchange>
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="alpha"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="ucld.mean"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="ucld.stdev"/>
		</scaleOperator>
		<subtreeSlide size="18.0" gaussian="true" weight="15">
			<treeModel idref="treeModel"/>
		</subtreeSlide>
		<narrowExchange weight="15">
			<treeModel idref="treeModel"/>
		</narrowExchange>
		<wideExchange weight="3">
			<treeModel idref="treeModel"/>
		</wideExchange>
		<wilsonBalding weight="3">
			<treeModel idref="treeModel"/>
		</wilsonBalding>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="treeModel.rootHeight"/>
		</scaleOperator>
		<uniformOperator weight="30">
			<parameter idref="treeModel.internalNodeHeights"/>
		</uniformOperator>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="birthDeath.meanGrowthRate"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="birthDeath.relativeDeathRate"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="birthDeath.sampleProbability"/>
		</scaleOperator>
		<upDownOperator scaleFactor="0.75" weight="3">
			<up>
				<parameter idref="ucld.mean"/>
			</up>
			<down>
				<parameter idref="treeModel.allInternalNodeHeights"/>
			</down>
		</upDownOperator>
		<swapOperator size="1" weight="10" autoOptimize="false">
			<parameter idref="branchRates.categories"/>
		</swapOperator>
		<uniformIntegerOperator weight="10">
			<parameter idref="branchRates.categories"/>
		</uniformIntegerOperator>
	</operators>

	<!-- Define MCMC                                                             -->
	<mcmc id="mcmc" chainLength="40000000" autoOptimize="true">
		<posterior id="posterior">
			<prior id="prior">
				<booleanLikelihood>
					<monophylyStatistic idref="monophyly(Hemi_Rhin)"/>
					<monophylyStatistic idref="monophyly(Carcharhiniformes)"/>
					<monophylyStatistic idref="monophyly(Car_Ore)"/>
					<monophylyStatistic idref="monophyly(Orectolobiformes)"/>
				</booleanLikelihood>
				<exponentialPrior mean="2.6" offset="167.7">
					<statistic idref="tmrca(Carcharhiniformes)"/>
				</exponentialPrior>
				<exponentialPrior mean="31.5" offset="175.6">
					<statistic idref="tmrca(Car_Ore)"/>
				</exponentialPrior>
				<exponentialPrior mean="16.9" offset="125.0">
					<statistic idref="tmrca(Hemi_Rhin)"/>
				</exponentialPrior>
				<logNormalPrior mean="1.0" stdev="1.25" offset="0.0" meanInRealSpace="false">
					<parameter idref="kappa1"/>
				</logNormalPrior>
				<logNormalPrior mean="1.0" stdev="1.25" offset="0.0" meanInRealSpace="false">
					<parameter idref="kappa2"/>
				</logNormalPrior>
				<uniformPrior lower="0.0" upper="1.0">
					<parameter idref="frequencies"/>
				</uniformPrior>
				<exponentialPrior mean="0.5" offset="0.0">
					<parameter idref="alpha"/>
				</exponentialPrior>
				<exponentialPrior mean="0.3333333333333333" offset="0.0">
					<parameter idref="ucld.stdev"/>
				</exponentialPrior>
				<exponentialPrior mean="0.005" offset="0.0">
					<parameter idref="ucld.mean"/>
				</exponentialPrior>
				<uniformPrior lower="0.0" upper="100000.0">
					<parameter idref="birthDeath.meanGrowthRate"/>
				</uniformPrior>
				<uniformPrior lower="0.0" upper="1.0">
					<parameter idref="birthDeath.relativeDeathRate"/>
				</uniformPrior>
				<exponentialPrior mean="0.1" offset="0.0">
					<parameter idref="birthDeath.sampleProbability"/>
				</exponentialPrior>
				<speciationLikelihood idref="speciation"/>
			</prior>
			<likelihood id="likelihood">
				<treeLikelihood idref="treeLikelihood"/>
			</likelihood>
		</posterior>
		<operators idref="operators"/>

		<!-- write log to screen                                                     -->
		<log id="screenLog" logEvery="10000">
			<column label="Posterior" dp="4" width="12">
				<posterior idref="posterior"/>
			</column>
			<column label="Prior" dp="4" width="12">
				<prior idref="prior"/>
			</column>
			<column label="Likelihood" dp="4" width="12">
				<likelihood idref="likelihood"/>
			</column>
			<column label="rootHeight" sf="6" width="12">
				<parameter idref="treeModel.rootHeight"/>
			</column>
			<column label="ucld.mean" sf="6" width="12">
				<parameter idref="ucld.mean"/>
			</column>
		</log>

		<!-- write log to file                                                       -->
		<log id="fileLog" logEvery="1000" fileName="car_ore_dl2_noins_21an16_1ws_40mio_prior.log.txt" overwrite="false">
			<posterior idref="posterior"/>
			<prior idref="prior"/>
			<likelihood idref="likelihood"/>
			<parameter idref="treeModel.rootHeight"/>
			<tmrcaStatistic idref="tmrca(Carcharhiniformes)"/>
			<tmrcaStatistic idref="tmrca(Car_Ore)"/>
			<tmrcaStatistic idref="tmrca(Orectolobiformes)"/>
			<tmrcaStatistic idref="tmrca(Hemi_Rhin)"/>
			<parameter idref="birthDeath.meanGrowthRate"/>
			<parameter idref="birthDeath.relativeDeathRate"/>
			<parameter idref="birthDeath.sampleProbability"/>
			<parameter idref="kappa1"/>
			<parameter idref="kappa2"/>
			<parameter idref="frequencies"/>
			<parameter idref="alpha"/>
			<parameter idref="ucld.mean"/>
			<parameter idref="ucld.stdev"/>
			<rateStatistic idref="meanRate"/>
			<rateStatistic idref="coefficientOfVariation"/>
			<rateCovarianceStatistic idref="covariance"/>
			<treeLikelihood idref="treeLikelihood"/>
			<speciationLikelihood idref="speciation"/>
		</log>

		<!-- write tree log to file                                                  -->
		<logTree id="treeFileLog" logEvery="1000" nexusFormat="true" fileName="car_ore_dl2_noins_21an16_1ws_40mio_prior.trees.txt" sortTranslationTable="true">
			<treeModel idref="treeModel"/>
			<trait name="rate" tag="rate">
				<discretizedBranchRates idref="branchRates"/>
			</trait>
			<posterior idref="posterior"/>
		</logTree>
	</mcmc>
	<report>
		<property name="timer">
			<mcmc idref="mcmc"/>
		</property>
	</report>
</beast>
