IQuery         Heliorhodopsin
Match_columns 255
No_of_seqs    101 out of 109
Neff          4.88291
Searched_HMMs 56780
Date          Sun Nov 19 10:06:42 2017
Command       hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -o ../results/5492473.hhr -oa3m ../results/5492473.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build/data/context_data.crf 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 4HYJ_A Rhodopsin; Seven-helica  99.1 2.2E-10 3.9E-15  103.4  21.3  228    2-251     1-235 (258)
  2 2M3G_A Bacteriorhodopsin; Soli  97.9   1E-05 1.8E-10   72.3  15.5  180   67-251    37-220 (235)
  3 5JSI_B Nitrate/nitrite sensor   97.8   6E-05 1.1E-09   66.6  18.9  171   65-250    37-209 (220)
  4 5FJG_A CHLORIDE PUMPING RHODOP  97.8 3.3E-05 5.8E-10   70.9  17.5  186   65-252    53-249 (275)
  5 5G28_A CHLORIDE PUMPING RHODOP  97.8 3.3E-05 5.8E-10   70.9  17.5  186   65-252    53-249 (275)
  6 3AM6_B rhodopsin-2; seven tran  97.7 0.00015 2.6E-09   64.6  20.4  220    4-250     1-220 (229)
  7 2L6X_A Green-light absorbing p  97.7 0.00015 2.7E-09   65.4  20.1  172   65-251    44-224 (243)
  8 2JAF_A HALORHODOPSIN; CHROMOPH  97.6 0.00041 7.2E-09   64.1  22.3  213   13-249    30-250 (274)
  9 3WT9_A Rhodopsin I; MEMBRANE P  97.6 0.00019 3.4E-09   64.7  18.7  223    1-250     8-234 (244)
 10 4XTL_A KR2; ion pump, membrane  97.6 0.00059   1E-08   63.3  22.2  227    3-251    19-265 (288)
 11 4XTN_A KR2; ion pump, membrane  97.6 0.00059   1E-08   63.3  22.2  227    3-251    19-265 (288)
 12 5AZD_C Thermophilic rhodopsin;  97.6 8.8E-05 1.5E-09   67.8  16.4  185   65-251    47-243 (268)
 13 3UG9_A Archaeal-type opsin 1,   97.6 0.00016 2.9E-09   69.1  18.8  212   13-251    69-283 (333)
 14 3QAP_A Sensory rhodopsin-2; Ph  97.6 6.8E-05 1.2E-09   67.3  15.3  181   65-252    36-216 (239)
 15 1XIO_A ANABAENA SENSORY RHODOP  97.5 9.5E-05 1.7E-09   67.7  16.1  180   67-251    38-220 (261)
 16 4YZI_A Sensory opsin A,Archaea  97.5 8.5E-05 1.5E-09   69.8  15.9  181   65-251    85-268 (304)
 17 4L35_A Cruxrhodopsin-3; protei  97.5 0.00014 2.5E-09   65.5  16.5  182   67-251    42-230 (250)
 18 2KSY_A Sensory rhodopsin II; m  97.5 0.00011 1.9E-09   66.4  15.8  180   65-251    36-215 (247)
 19 4KNF_E Blue-light absorbing pr  97.5 0.00025 4.4E-09   64.9  18.1  178   65-251    62-243 (261)
 20 4QI1_B Bacteriorhodopsin-I; Ba  97.5 0.00035 6.1E-09   64.0  18.9  225    4-251     8-234 (262)
 21 3DDL_A Xanthorhodopsin; rhodop  97.5  0.0017   3E-08   59.8  23.1  228    2-252     6-251 (273)
 22 3WQJ_A Archaerhodopsin-2; 7 tr  97.4 0.00032 5.7E-09   64.0  17.5  214   15-251    22-237 (259)
 23 1E12_A HALORHODOPSIN; ION PUMP  97.4  0.0012 2.1E-08   60.1  20.7  219    7-249     3-229 (253)
 24 4JQ6_B Proteorhodopsin; retiny  97.4 0.00066 1.2E-08   60.7  18.5  176   65-251    43-223 (235)
 25 4Y9H_A human heart fatty acid   97.3 0.00025 4.4E-09   63.0  15.3  180   67-251    39-221 (226)
 26 4QRY_A Halorhodopsin; 7 transm  97.3  0.0011   2E-08   61.8  20.3  214   13-251    35-266 (291)
 27 5B0W_A Halorhodopsin; seven tr  97.3  0.0011   2E-08   61.8  20.3  214   13-251    35-266 (291)
 28 1R84_A Bacteriorhodopsin; prot  97.3 0.00029 5.2E-09   62.8  15.5  181   67-251    44-226 (232)
 29 2Z55_A Archaerhodopsin-2; reti  97.3 0.00022 3.9E-09   64.7  14.8  182   67-251    48-231 (253)
 30 3T45_C Bacteriorhodopsin (GROU  97.3 0.00032 5.6E-09   62.3  15.5  181   65-251    36-220 (225)
 31 1M0K_A BACTERIORHODOPSIN; ION   97.3 0.00029   5E-09   64.4  15.5  180   67-251    57-239 (262)
 32 4FBZ_A deltarhodopsin; 7 trans  97.2 0.00046 8.1E-09   62.0  15.1  183   65-249    41-224 (241)
 33 3DL8_G SecA, SecG, SecY, SecE;  51.7   3E+02  0.0053   27.3  10.7  174   59-234    71-263 (429)
 34 2ZQP_Y Preprotein translocase   42.1 5.2E+02  0.0092   25.8  14.0  152   59-216    71-235 (434)
 35 5AWW_Y Protein translocase sub  37.2 6.4E+02   0.011   25.4  14.2  152   59-216    71-235 (444)
 36 5XJY_A ATP-binding cassette su  25.1   2E+03   0.035   27.2  16.7  217    1-218  1602-1847(2305)
 37 5GAE_g 50S ribosomal protein L  22.0 1.2E+03   0.021   23.4  11.7  158   59-221    76-245 (443)
 38 1RH5_A Preprotein translocase   20.9 1.3E+03   0.022   23.3  12.6  142   65-209    71-225 (436)

No 1
>4HYJ_A Rhodopsin; Seven-helical transmembrane protein, Proton pump; HET: LFA, RET; 2.3A {Exiguobacterium sibiricum}; Related PDB entries: 4HYJ_B 
Probab=99.05  E-value=2.2e-10  Score=103.40  Aligned_cols=228  Identities=14%  Similarity=0.128  Sum_probs=0.0  Template_Neff=8.100

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHH
Q Heliorhodopsin    2 AKPTVKEIKSLQNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHF   81 (255)
Q Consensus         2 ~~~~~~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~   81 (255)
                      ++..+--.+-.+.+..+...+.++-.++.+..+.+.+......+                     ...++-..+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~w~~~~~~~~~~l~f~~~~~~~~~~~R~~~---------------------~l~~~i~~ia~~~Y~   59 (258)
T 4HYJ_A            1 MEEVNLLVLATQYMFWVGFVGMAAGTLYFLVERNSLAPEYRSTA---------------------TVAALVTFVAAIHYY   59 (258)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGSCTTTHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHH---------------------HHHHHHHHHHHHHHH


Q ss_pred             HHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchh---HHHHHHHHHHHHHHHHHHHHHHHHHcCC----
Q Heliorhodopsin   82 IVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIA---DIVALLAIFGVNASMILFGWLQEKYTQP----  154 (255)
Q Consensus        82 l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~---Di~aLv~if~lna~milfG~l~E~~n~~----  154 (255)
                      ..+.......+..+.++..++.|++||.++.++|+..++.+.|..   |...++...+.+..|+.+|++.|....+    
T Consensus        60 ~ma~~~g~~~~~~~~~~~~~~~RYi~W~vTtPlll~~l~~l~g~~~~~~~~~~~~~v~~~~~mi~~G~~g~~~~~~~~~~  139 (258)
T 4HYJ_A           60 FMKDAVGTSGLLSEIDGFPTEIRYIDWLVTTPLLLVKFPLLLGLKGRLGRPLLTKLVIADVIMIVGGYIGESSINIAGGF  139 (258)
T ss_dssp             HHHHHHCSSCCGGGCCSCHHHHHHHHHHHHHHHHHTHHHHHHC---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHH
Q Heliorhodopsin  155 KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYI  234 (255)
Q Consensus       155 ~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YI  234 (255)
                      ....|..|.+||++.+.-...+....-....+.+++.......+....++.+..+++...+...+.| ..+...+|..|.
T Consensus       140 ~~~~w~~~~~g~~~f~~v~~~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~~~g-~~~~~~~~~~y~  218 (258)
T 4HYJ_A          140 TQLGLWSYLIGCFAWIYIIYLLFTNVTKAAENKPAPIRDALLKMRLFILIGWAIYPIGYAVTLFAPG-VEIQLVRELIYN  218 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTSCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-cchHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHhc
Q Heliorhodopsin  235 VLSLVAKSALAWQIFSG  251 (255)
Q Consensus       235 vLSlvaKs~LAW~vf~g  251 (255)
                      ++.+++|...++.+...
T Consensus       219 ilDv~~K~~fg~~ll~~  235 (258)
T 4HYJ_A          219 FADLTNKVGFGLIAFFA  235 (258)
T ss_dssp             HHHHCCCCCHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHH


No 2
>2M3G_A Bacteriorhodopsin; Solid state NMR, Anabaena Sensory; HET: RET; NMR {Nostoc sp. PCC 7120}; Related PDB entries: 1XIO_A 2M3G_B 2M3G_C 5UK6_B 5UK6_A 5UK6_C 4TL3_B 4TL3_A
Probab=97.85  E-value=1e-05  Score=72.31  Aligned_cols=180  Identities=12%  Similarity=0.135  Sum_probs=0.0  Template_Neff=8.200

Q ss_pred             HHHHHH-HHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHH
Q Heliorhodopsin   67 LAVALF-LGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGI---ADIVALLAIFGVNASMI  142 (255)
Q Consensus        67 ~~va~F-l~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv---~Di~aLv~if~lna~mi  142 (255)
                      ...+.+ ..+++++++..+.   ...+...-.|...+.|.+||.++.++|+..+..+.|.   .|...+..+.+++..|+
T Consensus        37 ~~~~~~i~~ia~~aY~~ma~---~~g~~~~~~~~~~~~RYv~W~iTtPlll~~l~lla~~~~~~~~~~i~~~v~~~~~mi  113 (235)
T 2M3G_A           37 YLVAMFIPIWSGLAYMAMAI---DQGKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVI  113 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT---TTTCEEETTEEECHHHHHHHHHHHHHHHHHHHHHHCCCCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc---CCCccccCcceehHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q Heliorhodopsin  143 LFGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGK  222 (255)
Q Consensus       143 lfG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~  222 (255)
                      .+|++.|... .....|..|.+||.+.+.-...+.-..-......+++.-.....+.....+.+..+++.-.+.....|.
T Consensus       114 ~~Gl~g~~~~-~~~~~w~~~~is~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~g~~~  192 (235)
T 2M3G_A          114 TSGLIADLSE-RDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIGPSGFGW  192 (235)
T ss_dssp             HHHHHHHSCS-CTTHHHHHHHHHHHHHHHHHHHHHSTTTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSBTTTBSSS
T ss_pred             HHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHCccCCCc


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  223 WSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       223 W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      - |-...|..|.++.+++|...+..+..+
T Consensus       193 i-~~~~~~~~y~ilDv~~K~~fg~~ll~~  220 (235)
T 2M3G_A          193 I-NQTIDTFLFCLLPFFSKVGFSFLDLHG  220 (235)
T ss_dssp             C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHHHHHHHHHHHHH


No 3
>5JSI_B Nitrate/nitrite sensor protein NarQ (E.C.2.7.13.3); membrane protein, iodide, UNKNOWN FUNCTION; HET: LYR, OLC, LFA, IOD; 2.0A {Candidatus Actinomarina minuta}; Related PDB entries: 5JSI_A
Probab=97.78  E-value=6e-05  Score=66.63  Aligned_cols=171  Identities=13%  Similarity=0.081  Sum_probs=0.0  Template_Neff=8.300

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchh--HHHHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIA--DIVALLAIFGVNASMI  142 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~--Di~aLv~if~lna~mi  142 (255)
                      ...+.+.-..++++..+..+.  .++.     .+..++.|.+|+.++.++|+..++.+.|..  +........+.+..|+
T Consensus        37 ~~~l~~~i~~ia~~~Y~~m~~--~~~~-----~~~~~~~RYv~W~vttPlll~~l~~la~~~~~~~~~~~~~~~~~~~mi  109 (220)
T 5JSI_B           37 GVYISALVCGIAWYHYQKMGA--SWES-----GSYDTGLRYVDWVLTVPLMFVEVLAVTRKGAAYNEAVRNWGIAATVMI  109 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--HHHT-----TCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hccc-----CCCCcHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q Heliorhodopsin  143 LFGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGK  222 (255)
Q Consensus       143 lfG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~  222 (255)
                      .+|++.|...+....+|..|.+||    +.|+.+............++.-.....+.....+.+..+++.-.+.....  
T Consensus       110 ~~g~~g~~~~~~~~~~w~~~~~s~----~~f~~v~~~l~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~g~--  183 (220)
T 5JSI_B          110 GAGYYGETSAAGSNEYWTGFVIAM----ATYVWLMRNLQAEGEGLKGDQAVAFENIKNLILVGWIIYPLGYIAPVVGD--  183 (220)
T ss_dssp             HHHHHHHTSCTTSHHHHHHHHHHH----HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSC--
T ss_pred             HHHHHHHhccCCCchHHHHHHHHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q Heliorhodopsin  223 WSNYLRGERAYIVLSLVAKSALAWQIFS  250 (255)
Q Consensus       223 W~dYl~GE~~YIvLSlvaKs~LAW~vf~  250 (255)
                       .+ ...|-.|-++.+++|...+..+..
T Consensus       184 -~~-~~~~i~~~ilDv~~K~~f~~~ll~  209 (220)
T 5JSI_B          184 -FD-AIREVLYTIADIINXVGLGVLVLQ  209 (220)
T ss_dssp             -CS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HH-HHHHHHHHHHHHHhHHHHHHHHHH


No 4
>5FJG_A CHLORIDE PUMPING RHODOPSIN; TRANSPORT PROTEIN; HET: OLA, ANR; 2.0A {NONLABENS MARINUS S1-08}; Related PDB entries: 5B2N_A 5G54_A 5G28_A 5G2D_A 5G2A_A 5G2C_A 
Probab=97.76  E-value=3.3e-05  Score=70.85  Aligned_cols=186  Identities=7%  Similarity=0.006  Sum_probs=0.0  Template_Neff=7.900

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHH-------HHHHcCCCchHHHHHHHhHHHHHHHHHHHhchh---HHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYS-------ASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIA---DIVALLAI  134 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~-------~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~---Di~aLv~i  134 (255)
                      ...+.++=.+++++.++..+. -+-..+.       ..-.+..++.|++||.++.++|+..++.+.|..   ....+..+
T Consensus        53 ~~~l~~~i~~ia~~~Y~~ma~-g~~~~~~~~~~~~~~~~~~~~~~~RYv~W~vTtPlll~~L~ll~~~~~~~~~~~i~~~  131 (275)
T 5FJG_A           53 ATALSCIVMVSAGLILNSQAV-MWTDAYAYVDGSYQLQDLTFSNGYRYVNWMATIPCLLLQLLIVLNLKGKELFSTATWL  131 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHEEEETTEEEECCTTCCTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-cccchhhhccCccccCCCccccHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin  135 FGVNASMILFGWLQEKYTQP-KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQ  213 (255)
Q Consensus       135 f~lna~milfG~l~E~~n~~-~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq  213 (255)
                      .+.+..|+.+|++.|....+ ....|..|.+||...+.-...+.-.........+++.-.....+.....+.+..+++.-
T Consensus       132 v~~~~~mi~~Gl~g~~~~~~~~~~~~~~~~~s~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw  211 (275)
T 5FJG_A          132 ILAAWGMIITGYVGQLYEVDDIAQLMIWGAVSTAFFVVMNWIVGTKIFKNRATMLGGTDSTITKVFWLMMFAWTLYPIAY  211 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHhcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q Heliorhodopsin  214 YLQYKGKGKWSNYLRGERAYIVLSLVAKSALAWQIFSGT  252 (255)
Q Consensus       214 ~lQyk~vg~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g~  252 (255)
                      .+-....|.- +-...+-.|-++.+++|...+..+..+.
T Consensus       212 ~l~~~g~~~i-~~~~e~i~y~ilDv~~K~~fg~~ll~~~  249 (275)
T 5FJG_A          212 LVPAFMNNAD-GVVLRQLLFTIADISSKVIYGLMITYIA  249 (275)
T ss_dssp             HHHHHCCSHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_pred             HhchhccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH


No 5
>5G28_A CHLORIDE PUMPING RHODOPSIN; SIGNALING PROTEIN; HET: RET, OLA; 1.57A {NONLABENS MARINUS S1-08}; Related PDB entries: 5B2N_A 5G54_A 5G2D_A 5G2A_A 5G2C_A 5FJG_A
Probab=97.76  E-value=3.3e-05  Score=70.85  Aligned_cols=186  Identities=7%  Similarity=0.006  Sum_probs=0.0  Template_Neff=7.900

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHH-------HHHHcCCCchHHHHHHHhHHHHHHHHHHHhchh---HHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYS-------ASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIA---DIVALLAI  134 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~-------~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~---Di~aLv~i  134 (255)
                      ...+.++=.+++++.++..+. -+-..+.       ..-.+..++.|++||.++.++|+..++.+.|..   ....+..+
T Consensus        53 ~~~l~~~i~~ia~~~Y~~ma~-g~~~~~~~~~~~~~~~~~~~~~~~RYv~W~vTtPlll~~L~ll~~~~~~~~~~~i~~~  131 (275)
T 5G28_A           53 ATALSCIVMVSAGLILNSQAV-MWTDAYAYVDGSYQLQDLTFSNGYRYVNWMATIPCLLLQLLIVLNLKGKELFSTATWL  131 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHEEEETTEEEECSSCCCSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-cccchhhhccCccccCCCccccHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin  135 FGVNASMILFGWLQEKYTQP-KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQ  213 (255)
Q Consensus       135 f~lna~milfG~l~E~~n~~-~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq  213 (255)
                      .+.+..|+.+|++.|....+ ....|..|.+||...+.-...+.-.........+++.-.....+.....+.+..+++.-
T Consensus       132 v~~~~~mi~~Gl~g~~~~~~~~~~~~~~~~~s~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw  211 (275)
T 5G28_A          132 ILAAWGMIITGYVGQLYEVDDIAQLMIWGAVSTAFFVVMNWIVGTKIFKNRATMLGGTDSTITKVFWLMMFAWTLYPIAY  211 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHhcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q Heliorhodopsin  214 YLQYKGKGKWSNYLRGERAYIVLSLVAKSALAWQIFSGT  252 (255)
Q Consensus       214 ~lQyk~vg~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g~  252 (255)
                      .+-....|.- +-...+-.|-++.+++|...+..+..+.
T Consensus       212 ~l~~~g~~~i-~~~~e~i~y~ilDv~~K~~fg~~ll~~~  249 (275)
T 5G28_A          212 LVPAFMNNAD-GVVLRQLLFTIADISSKVIYGLMITYIA  249 (275)
T ss_dssp             HHHHHCCSHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_pred             HhchhccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH


No 6
>3AM6_B rhodopsin-2; seven trans-membrane, Transport Protein; HET: RET, CLR; 3.2A {Acetabularia acetabulum}; Related PDB entries: 3AM6_C 3AM6_A 3AM6_D
Probab=97.72  E-value=0.00015  Score=64.60  Aligned_cols=220  Identities=10%  Similarity=0.074  Sum_probs=0.0  Template_Neff=8.200

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin    4 PTVKEIKSLQNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFIV   83 (255)
Q Consensus         4 ~~~~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l~   83 (255)
                      |.+..-+.=+.+.......+.+-+++....+.....+..                     .....-++-..++++.++..
T Consensus         1 ~~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~r---------------------~~~~l~~~i~~ia~~~Y~~m   59 (229)
T 3AM6_B            1 MADVETETGMIAQWIVFAIMAAAAIAFGVAVHFRPSELK---------------------SAYYINIAICTIAATAYYAM   59 (229)
T ss_dssp             CCBCCCHHHHHHHHHHHHHHHHHHHHHHHHGGGCC--CH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHcCCChhhH---------------------HHHHHHHHHHHHHHHHHHHH


Q ss_pred             HcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHH
Q Heliorhodopsin   84 SSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILFGWLQEKYTQPKDGDLLPFW  163 (255)
Q Consensus        84 a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milfG~l~E~~n~~~~~~~~pf~  163 (255)
                      +.  ..+.=..+-.|-.++.|.+||.++.++|+..++.+.|..-- .+..+.+.+..|+.+|++.|... ++..+|..|.
T Consensus        60 a~--~~g~~~~~~~~~~~~~RYi~W~vTtPlll~~l~ll~~~~~~-~~~~~i~~~~~mi~~g~~g~~~~-~~~~~w~~~~  135 (229)
T 3AM6_B           60 AV--NYQDLTMNGERQVVYARYIDWVLTTPLLLLDLIVMTKMGGV-MISWVIGADIFMIVFGILGAFED-EHKFKWVYFI  135 (229)
T ss_dssp             HH--TTTSCCBSSSBBCCTHHHHHHHHHHHHHHHHHHTTSCCCHH-HHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHH
T ss_pred             Hh--cccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHHHHHHHHHHH
Q Heliorhodopsin  164 FGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYIVLSLVAKSA  243 (255)
Q Consensus       164 ~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YIvLSlvaKs~  243 (255)
                      +||+..+.-.-.+...........+++.-..-..+.....+.+..+++.-.+-.  .+.--+-...+-.|.++.+++|..
T Consensus       136 is~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~--g~~~i~~~~e~~~~~vlDv~~K~~  213 (229)
T 3AM6_B          136 AGCVMQAVLTYGMYNATWKDDLKKSPEYHSSYVSLLVFLSILWVFYPVVWAFGS--GSGVLSVDNEAILMGILDVLAKPL  213 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCC--CCHHHHHHHHHHHHHHHHHHTHHHHHHCCCC--CCSSSCHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHhHhHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHhhhHH


Q ss_pred             HHHHHHh
Q Heliorhodopsin  244 LAWQIFS  250 (255)
Q Consensus       244 LAW~vf~  250 (255)
                      .+..+..
T Consensus       214 f~~~ll~  220 (229)
T 3AM6_B          214 FGMGCLI  220 (229)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH


No 7
>2L6X_A Green-light absorbing proteorhodopsin; proteorhodopsin, membrane protein structure, cell-free; HET: RET; NMR {uncultured marine gamma proteobacterium EBAC31A08}; Related PDB entries: 4KNF_E 4KNF_A 4KNF_C 4KNF_B 4KNF_D 4KLY_E 4KLY_C 4KLY_D 4KLY_A 4KLY_B 
Probab=97.69  E-value=0.00015  Score=65.44  Aligned_cols=172  Identities=16%  Similarity=0.276  Sum_probs=0.0  Template_Neff=7.800

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchh---HHHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIA---DIVALLAIFGVNASM  141 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~---Di~aLv~if~lna~m  141 (255)
                      .....+.=..++++.++..+. .+-+.     .+..+..|.+||.++.++|+..++.+.|..   +-..+..+.+.+..|
T Consensus        44 ~~~l~~~i~~ia~~~Y~~ma~-g~~~~-----g~~~~~~RYv~W~iTtPlll~~l~lla~~~~~~~~~~~~~~v~~~~~m  117 (243)
T 2L6X_A           44 SLTVSGLVTGIAFWHYMYMRG-VWIET-----GDSPTVFRYIDWLLTVPLLICEFYLILAAATNVAGSLFKKLLVGSLVM  117 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-hhhhh-----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin  142 ILFGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGS-----TSDVAVPGFVYGIIISLFLFFNSFALVQYLQ  216 (255)
Q Consensus       142 ilfG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~-----~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQ  216 (255)
                      +.+|++.|...   ..+|..|.+||    +.|+.+....+....     ..+.+.-...-.+....++.+..+++.-.+.
T Consensus       118 i~~G~~g~~~~---~~~w~~f~i~~----~~~~~v~~~l~~~~~~~a~~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~  190 (243)
T 2L6X_A          118 LVFGYMGEAGI---MAAWPAFIIGC----LAWVYMIYELWAGEGKSACNTASPAVQSAYNTMMYIIIFGWAIYPVGYFTG  190 (243)
T ss_dssp             HHHHHHHHHCS---SCTTTHHHHHH----HHHHHHHHHHTTCSTTTSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhh---hhHHHHHHHHH----HHHHHHHHHHHhccHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh


Q ss_pred             H-hcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  217 Y-KGKGKWSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       217 y-k~vg~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      . ...|.  |-...|-.|.++.+++|...+..+..+
T Consensus       191 ~~~g~g~--~~~~~~~~y~ilDvl~K~~fg~~l~~~  224 (243)
T 2L6X_A          191 YLMGDGG--SALNLNLIYNLADFVNKILFGLIIWNV  224 (243)
T ss_dssp             HTSSSSC--CHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             hhccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHH


No 8
>2JAF_A HALORHODOPSIN; CHROMOPHORE, CHLORIDE PUMP, ION TRANSPORT; HET: PLM, BOG, RET; 1.7A {HALOBACTERIUM SALINARIUM}; Related PDB entries: 2JAG_A 5AHY_A 5AHZ_A 5G36_A 1E12_A
Probab=97.63  E-value=0.00041  Score=64.11  Aligned_cols=213  Identities=12%  Similarity=0.088  Sum_probs=0.0  Template_Neff=7.400

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHHHHcchhHHHH
Q Heliorhodopsin   13 QNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFIVSSGNFFKRY   92 (255)
Q Consensus        13 r~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~~Y   92 (255)
                      +.++.+...++.+-+++.+..+.+.+.|-++.+                    ..+.++=..++++.++..+. -+-..+
T Consensus        30 s~~lw~~~~~~~~~~~~f~~~~~~~~~~~~R~~--------------------~~l~~~i~~vaa~aY~~ma~-g~g~~~   88 (274)
T 2JAF_A           30 SSSLWVNVALAGIAILVFVYMGRTIRPGRPRLI--------------------WGATLMIPLVSISSYLGLLS-GLTVGM   88 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCTTHHHHH--------------------HHHHHHHHHHHHHHHHHHHH-TTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHH--------------------HHHHHHHHHHHHHHHHHHHc-CCcccc


Q ss_pred             HHH--------HHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHH
Q Heliorhodopsin   93 SAS--------LMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILFGWLQEKYTQPKDGDLLPFWF  164 (255)
Q Consensus        93 ~~~--------L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milfG~l~E~~n~~~~~~~~pf~~  164 (255)
                      ...        -.+...+.|.+||.++.++|+..++.+.|..-- ....+.+.+..|+.+|++.|.........|..|.+
T Consensus        89 v~~~~~~~~~~~~r~~~~~RYi~W~iTtPlll~~l~lla~~~~~-~i~~~v~~~~~mi~~Gl~g~~~~~~~~~kw~~f~i  167 (274)
T 2JAF_A           89 IEMPAGHALAGEMVRSQWGRYLTWALSTPMILLALGLLADVDLG-SLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAI  167 (274)
T ss_dssp             EECCTTSTTTTSEEEECHHHHHHHHHHHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             ccccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHHHHHHHHHHHH
Q Heliorhodopsin  165 GCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYIVLSLVAKSAL  244 (255)
Q Consensus       165 G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YIvLSlvaKs~L  244 (255)
                      ||...+.-+..+.-.+.....  +.+.-..-..+....++.+..+++.-.+-...-|.-.+-...+-.|-++.+++|...
T Consensus       168 s~~~fl~v~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~v~W~~YPivw~l~~eG~~~i~~~~~e~i~y~ilDvl~K~~f  245 (274)
T 2JAF_A          168 SCAFFVVVLSALVTDWAASAS--SAGTAEIFDTLRVLVVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVFAKYVF  245 (274)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSSCCHHHHHHHHHHHHCCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccccCchHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHH
Q Heliorhodopsin  245 AWQIF  249 (255)
Q Consensus       245 AW~vf  249 (255)
                      +..+.
T Consensus       246 g~~ll  250 (274)
T 2JAF_A          246 AFILL  250 (274)
T ss_dssp             HHHHH
T ss_pred             HHHHH


No 9
>3WT9_A Rhodopsin I; MEMBRANE PROTEIN, RETINAL, WATER CLUSTER; HET: RET, OLC; 1.48A {Acetabularia acetabulum}; Related PDB entries: 5AX1_A 5AWZ_A 3WTA_A 3WT8_A 5AX0_A
Probab=97.58  E-value=0.00019  Score=64.69  Aligned_cols=223  Identities=15%  Similarity=0.156  Sum_probs=0.0  Template_Neff=8.000

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHH
Q Heliorhodopsin    1 MAKPTVKEIKSLQNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFH   80 (255)
Q Consensus         1 ~~~~~~~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH   80 (255)
                      |....+..-+.-..+-.+....+.+.+++.+..+.+.+......+                     ...++-..++++.+
T Consensus         8 ~~~~~~~~~~~g~~~lw~~~~~~~~~~~~~~~~~~~~~~~~r~~~---------------------~l~~~i~~ia~v~Y   66 (244)
T 3WT9_A            8 MSNPNPFQTTLGTDAQWVVFAVMALAAIVFSIAVQFRPLPLRLTY---------------------YVNIAICTIAATAY   66 (244)
T ss_dssp             -CCCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH---------------------HHHHHHHHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhHHH---------------------HHHHHHHHHHHHHH


Q ss_pred             HHHHcchhHHHHH----HHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q Heliorhodopsin   81 FIVSSGNFFKRYS----ASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILFGWLQEKYTQPKD  156 (255)
Q Consensus        81 ~l~a~p~~~~~Y~----~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milfG~l~E~~n~~~~  156 (255)
                      +..++ -+-..+.    +.-.|..++.|.+||.++.++|+..+..+.|. |-.......+.+..|+.+|+..|...  +.
T Consensus        67 ~~ma~-~~g~~~~~~~~~~~~r~v~~~RYv~W~iTtPlll~~l~~l~g~-~~~~~~~~v~~~~~mi~~g~~g~~~~--~~  142 (244)
T 3WT9_A           67 YAMAV-NGGDNKPTAGTGADERQVIYARYIDWVFTTPLLLLDLVLLTNM-PATMIAWIMGADIAMIAFGIIGAFTV--GS  142 (244)
T ss_dssp             HHHHH-HGGGCCCEESCGGGCEECCCHHHHHHHHHHHHHHHHHHTTBCC-CHHHHHHHHHHHHHHHHHHHHHHHCC--ST
T ss_pred             HHHHh-cCCCCCCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHcc--cc


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHHHH
Q Heliorhodopsin  157 GDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYIVL  236 (255)
Q Consensus       157 ~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YIvL  236 (255)
                      .+|..|.+||++.+.-.-.+...........+++.-.....+....++.+..+++.-.+-....-  -+-...+-.|-++
T Consensus       143 ~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~~~~--i~~~~e~i~y~il  220 (244)
T 3WT9_A          143 YKWFYFVVGCIMLAVLAWGMINPIFKEELQKHKEYTGAYTTLLIYLIVLWVIYPIVWGLGAGGHI--IGVDVEIIAMGIL  220 (244)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHCGGGBSCTTTHHHHHHHHHHHHHHHHHHHHHHCCCCCTCC--SCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc--cCHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHh
Q Heliorhodopsin  237 SLVAKSALAWQIFS  250 (255)
Q Consensus       237 SlvaKs~LAW~vf~  250 (255)
                      .+++|...+..+..
T Consensus       221 Dv~~K~~fg~~ll~  234 (244)
T 3WT9_A          221 DLLAKPLYAIGVLI  234 (244)
T ss_dssp             HHCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH


No 10
>4XTL_A KR2; ion pump, membrane protein; HET: LYR, GOL, LFA; 1.45A {Dokdonia eikasta}; Related PDB entries: 3X3B_A 3X3C_A 5JRF_A 4XTO_A 4XTN_G 4XTN_A 4XTN_C 4XTN_J 4XTN_H 4XTN_B 4XTN_D 4XTN_F 4XTN_I 4XTN_E 4XTO_B 4XTO_E 4XTO_D 4XTO_C
Probab=97.56  E-value=0.00059  Score=63.32  Aligned_cols=227  Identities=9%  Similarity=0.049  Sum_probs=0.0  Template_Neff=7.600

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin    3 KPTVKEIKSLQNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFI   82 (255)
Q Consensus         3 ~~~~~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l   82 (255)
                      +.++.+.+.-..+..+.....++-+++.+..+.+.+.+....+                     ...++=..++++.++.
T Consensus        19 ~~~~~~~~~~~~~lw~~~~~~~~~~l~~~~~~~~~~~~~R~~~---------------------~l~~~i~~ia~~~Y~~   77 (288)
T 4XTL_A           19 GFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKNVDKKFQMSN---------------------ILSAVVMVSAFLLLYA   77 (288)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCGGGHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHH---------------------HHHHHHHHHHHHHHHH


Q ss_pred             HHcchhHHHHHHHH-----------HcCCCchHHHHHHHhHHHHHHHHHHHhchhHH---HHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   83 VSSGNFFKRYSASL-----------MKNQNIFRWVEYSLSSSVMIVLIAQICGIADI---VALLAIFGVNASMILFGWLQ  148 (255)
Q Consensus        83 ~a~p~~~~~Y~~~L-----------~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di---~aLv~if~lna~milfG~l~  148 (255)
                      .+. -+-..+...-           .+..+..|.++|.++.++|++.++.+.|...-   ..+..+.+.+..|+.+|++.
T Consensus        78 ma~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~RYv~W~iTtPLll~~L~llag~~~~~~~~~~~~lv~~~~~mi~~gl~g  156 (288)
T 4XTL_A           78 QAQ-NWTSSFTFNEEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIG  156 (288)
T ss_dssp             HHH-HHHHHEEEETTTTEEEECTTSCCCCTHHHHHHHHHHHHHHHHHGGGTSCCSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHc-cccccccccccccccccCCCCCccchHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc--ccch--
Q Heliorhodopsin  149 EKYTQP-KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKG--KGKW--  223 (255)
Q Consensus       149 E~~n~~-~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~--vg~W--  223 (255)
                      |..... +...|..|.+||++.+.-...+.-..-......+++.-.....+.....+.+..+++.-.+-...  .|+.  
T Consensus       157 a~~~~~~~~~kw~~~~is~~~fl~vl~~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~~~~~g~~~g  236 (288)
T 4XTL_A          157 QFYEVSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYS  236 (288)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTTSS
T ss_pred             HHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccC


Q ss_pred             -hhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  224 -SNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       224 -~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                       -+-...+-.|.++.+++|...+..+..+
T Consensus       237 ~i~~~~e~i~y~ilDv~~K~~Fg~~ll~~  265 (288)
T 4XTL_A          237 EDGVMARQLVYTIADVSSXVIYGVLLGNL  265 (288)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH


No 11
>4XTN_A KR2; ion pump, membrane protein; HET: LFA, MPG, LYR, NA; 2.2A {Dokdonia eikasta}; Related PDB entries: 3X3B_A 3X3C_A 4XTL_A 5JRF_A 4XTO_A 4XTN_G 4XTN_C 4XTN_J 4XTN_H 4XTN_B 4XTN_D 4XTN_F 4XTN_I 4XTN_E 4XTO_B 4XTO_E 4XTO_D 4XTO_C
Probab=97.56  E-value=0.00059  Score=63.32  Aligned_cols=227  Identities=9%  Similarity=0.049  Sum_probs=0.0  Template_Neff=7.600

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin    3 KPTVKEIKSLQNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFI   82 (255)
Q Consensus         3 ~~~~~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l   82 (255)
                      +.++.+.+.-..+..+.....++-+++.+..+.+.+.+....+                     ...++=..++++.++.
T Consensus        19 ~~~~~~~~~~~~~lw~~~~~~~~~~l~~~~~~~~~~~~~R~~~---------------------~l~~~i~~ia~~~Y~~   77 (288)
T 4XTN_A           19 GFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKNVDKKFQMSN---------------------ILSAVVMVSAFLLLYA   77 (288)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCGGGHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHH---------------------HHHHHHHHHHHHHHHH


Q ss_pred             HHcchhHHHHHHHH-----------HcCCCchHHHHHHHhHHHHHHHHHHHhchhHH---HHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   83 VSSGNFFKRYSASL-----------MKNQNIFRWVEYSLSSSVMIVLIAQICGIADI---VALLAIFGVNASMILFGWLQ  148 (255)
Q Consensus        83 ~a~p~~~~~Y~~~L-----------~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di---~aLv~if~lna~milfG~l~  148 (255)
                      .+. -+-..+...-           .+..+..|.++|.++.++|++.++.+.|...-   ..+..+.+.+..|+.+|++.
T Consensus        78 ma~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~RYv~W~iTtPLll~~L~llag~~~~~~~~~~~~lv~~~~~mi~~gl~g  156 (288)
T 4XTN_A           78 QAQ-NWTSSFTFNEEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIG  156 (288)
T ss_dssp             HHH-HHHHHEEEETTTTEEEECGGGCCCCTHHHHHHHHHHHHHHHHHGGGTSCCSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHc-cccccccccccccccccCCCCCccchHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc--ccch--
Q Heliorhodopsin  149 EKYTQP-KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKG--KGKW--  223 (255)
Q Consensus       149 E~~n~~-~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~--vg~W--  223 (255)
                      |..... +...|..|.+||++.+.-...+.-..-......+++.-.....+.....+.+..+++.-.+-...  .|+.  
T Consensus       157 a~~~~~~~~~kw~~~~is~~~fl~vl~~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~~~~~g~~~g  236 (288)
T 4XTN_A          157 QFYEVSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYS  236 (288)
T ss_dssp             HTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTC-CCTTSS
T ss_pred             HHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccC


Q ss_pred             -hhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  224 -SNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       224 -~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                       -+-...+-.|.++.+++|...+..+..+
T Consensus       237 ~i~~~~e~i~y~ilDv~~K~~Fg~~ll~~  265 (288)
T 4XTN_A          237 EDGVMARQLVYTIADVSSXVIYGVLLGNL  265 (288)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH


No 12
>5AZD_C Thermophilic rhodopsin; Membrane protein, Retinal, Ion pump; HET: LYR; 2.8A {Thermus thermophilus JL-18}; Related PDB entries: 5AZD_B 5AZD_A 5AZD_D 
Probab=97.56  E-value=8.8e-05  Score=67.84  Aligned_cols=185  Identities=11%  Similarity=0.105  Sum_probs=0.0  Template_Neff=7.900

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHH-------HHcCCCchHHHHHHHhHHHHHHHHHHHhchhH---HHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSAS-------LMKNQNIFRWVEYSLSSSVMIVLIAQICGIAD---IVALLAI  134 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~-------L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~D---i~aLv~i  134 (255)
                      .....+.-..++++.++..+. -+-..+..+       -.+...+.|.+||.++.++|+..+..+.|...   ...+...
T Consensus        47 ~~~l~~~i~~ia~~aY~~ma~-g~~~~~~~~~~~~~~~~~~~~~~~RYv~W~iTtPlll~~l~ll~g~~~~~~~~~~~~~  125 (268)
T 5AZD_C           47 ALYLSALIVFIAGYHYLRIFE-SWVGAYQLQDGVYVPTGKPFNDFYRYADWLLTVPLLLLELILVLGLTAARTWNLSIKL  125 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHEEEETTEEEECSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-hcccccccccCeecCCCCccchHHHHHHHhcHHHHHHHHHHHHHCccchhcHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCcchHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin  135 FGVNASMILFGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGST--SDVAVPGFVYGIIISLFLFFNSFALV  212 (255)
Q Consensus       135 f~lna~milfG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~--~~~~~P~fV~~I~~~~fv~Fn~Fain  212 (255)
                      .+.+..|+.+|++.+.... ...+|..+.+||...+.-...+....-.+...  .+.+.-...-.+....++.+..+++.
T Consensus       126 v~~~~~mi~~gl~g~~~~~-~~~~~~w~~~s~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPiv  204 (268)
T 5AZD_C          126 VVASVLMLALGYVGEVNTE-PGPRTLWGALSSIPFFYILYVLWVELGQAIREAKFGPRVLELLGATRLVLLMSWGFYPIA  204 (268)
T ss_dssp             HHHHHHHHHHHHHHHSCCS-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHhcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  213 QYLQYKGKGKWSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       213 q~lQyk~vg~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      -.+.....+..-+-...+-.|.++.+++|...+..+..+
T Consensus       205 w~l~~~g~~g~i~~~~e~i~y~ilDv~~K~~fg~~ll~~  243 (268)
T 5AZD_C          205 YALGTWLPGGAAQEVAIQIGYSLADLIAXPIYGLLVFAI  243 (268)
T ss_dssp             HHHHHSCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             HHHccCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHH


No 13
>3UG9_A Archaeal-type opsin 1, Archaeal-type opsin; microbialrhodopsin, seven-transmembrane, light-gated cation channel; HET: RET, OLA; 2.3A {Chlamydomonas reinhardtii}; Related PDB entries: 4YZI_A
Probab=97.55  E-value=0.00016  Score=69.05  Aligned_cols=212  Identities=15%  Similarity=0.115  Sum_probs=0.0  Template_Neff=6.400

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHHHHcchhHHHH
Q Heliorhodopsin   13 QNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFIVSSGNFFKRY   92 (255)
Q Consensus        13 r~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~~Y   92 (255)
                      +.|..+...+..+..+.....+.+.+.+....+                     ...+.- +++++.++..++  ..+.-
T Consensus        69 ~~~lW~~fav~~ls~l~f~~~s~~~~~~~R~~~---------------------~l~~~i-~va~laYf~mas--~~g~~  124 (333)
T 3UG9_A           69 NILQWITFALSALCLMFYGYQTWKSTCGWEEIY---------------------VATIEM-IKFIIEYFHEFD--EPAVI  124 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHC--------CCHHHHH---------------------HHHHHH-HHHHHHHHHTTS--TTTSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHH---------------------HHHHHH-HHHHHHHHHHHc--CCccc


Q ss_pred             HHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhH--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q Heliorhodopsin   93 SASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIAD--IVALLAIFGVNASMILFGWLQEKYTQPKDGDLLPFWFGCIAGI  170 (255)
Q Consensus        93 ~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~D--i~aLv~if~lna~milfG~l~E~~n~~~~~~~~pf~~G~iaGi  170 (255)
                      ...-.|..++.|.+|+.++.++|+..++.+.|...  -..++.+.+.+..|+.+|++.+...  +..+|..|.+||++.+
T Consensus       125 ~~~~~r~v~~~RYvdWllTtPLLL~~L~llag~~~~~~~~i~~li~~~~~MIv~Gl~gal~~--~~~kw~~f~ig~~~fl  202 (333)
T 3UG9_A          125 YSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDIGTIVWGTTAALSK--GYVRVIFFLMGLCYGI  202 (333)
T ss_dssp             ECTTSCEECHHHHHHHHHHHHHHHHHHTTTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred             cCCCCccchHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHcc--chhHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHhcCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin  171 VPWIGLLIYVIAPGST-SDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYIVLSLVAKSALAWQIF  249 (255)
Q Consensus       171 vPWi~i~~~~~~~~~~-~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YIvLSlvaKs~LAW~vf  249 (255)
                      .-...+.-.+...... .+.+.......+....++.+..+++.-.+-....|..... ..+-.|-++.+++|...+..+.
T Consensus       203 ~v~~~l~~~~~~~~~~~~~~~~~~~y~~L~~l~~v~W~lYPIvW~Ls~eG~~~Is~~-~e~i~y~IlDllaK~vfg~~ll  281 (333)
T 3UG9_A          203 YTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWGMFPILFILGPEGFGVLSVY-GSTVGHTIIDLMSKNCWGLLGH  281 (333)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSSCHH-HHHHHHHHHHCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHCccccCCCCHH-HHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             hc
Q Heliorhodopsin  250 SG  251 (255)
Q Consensus       250 ~g  251 (255)
                      ..
T Consensus       282 ~~  283 (333)
T 3UG9_A          282 YL  283 (333)
T ss_dssp             HH
T ss_pred             HH


No 14
>3QAP_A Sensory rhodopsin-2; Phototaxis, NpHtrII, Membrane, TRANSPORT PROTEIN; HET: LFA, L2P, BOG, RET; 1.9A {Natronomonas pharaonis}; Related PDB entries: 5JJJ_A 5JJF_A 2F95_A 5JJE_A 5JJN_A 5JJN_C 2F93_A 2KSY_A 4GYC_A 1GUE_A 1H68_A 3QDC_A 1GU8_A 1H2S_A 1JGJ_A
Probab=97.55  E-value=6.8e-05  Score=67.28  Aligned_cols=181  Identities=11%  Similarity=0.145  Sum_probs=0.0  Template_Neff=8.100

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILF  144 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milf  144 (255)
                      .....++-..++++.++..+.   ...+...=.|-.+..|.+|+.++.++|+..++.+.|. |.-.+....+++..|+.+
T Consensus        36 ~~~l~~~i~~ia~vaY~~ma~---~~g~~~~~~r~~~~~RYv~W~vTtPlll~~l~~l~~~-~~~~~~~~~~~~~~mi~~  111 (239)
T 3QAP_A           36 YYVTLVGISGIAAVAYVVMAL---GVGWVPVAERTVFAPRYIDWILTTPLIVYFLGLLAGL-DSREFGIVITLNTVVMLA  111 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT---TCCEEEETTEEEEHHHHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc---CCCceecCcccccHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q Heliorhodopsin  145 GWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWS  224 (255)
Q Consensus       145 G~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~  224 (255)
                      |+..|...  +..+|..|.+||+..+...-.+.-.+-......+.+.-..-..+.....+.+..+++.-.+-....|.- 
T Consensus       112 g~~g~~~~--~~~~w~~~~~s~~~f~~~~~~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~yPivw~l~~~g~~~i-  188 (239)
T 3QAP_A          112 GFAGAMVP--GIERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLGPPGVALL-  188 (239)
T ss_dssp             HHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSCHHHHHHHHHHHHHHHHHHTHHHHHHHHSTTTTCCS-
T ss_pred             HHHHHhCc--ccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHCccccCCC-


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q Heliorhodopsin  225 NYLRGERAYIVLSLVAKSALAWQIFSGT  252 (255)
Q Consensus       225 dYl~GE~~YIvLSlvaKs~LAW~vf~g~  252 (255)
                      +-...|-.|-++.+++|...+..+....
T Consensus       189 ~~~~e~i~y~ilD~~~K~~f~~~ll~~~  216 (239)
T 3QAP_A          189 TPTVDVALIVYLDLVTKVGFGFIALDAA  216 (239)
T ss_dssp             CHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhHHHHHHHHHHHHH


No 15
>1XIO_A ANABAENA SENSORY RHODOPSIN; signaling protein, photoreceptor; HET: PEE, RET; 2.0A {Nostoc sp. PCC 7120} SCOP: f.13.1.1; Related PDB entries: 2M3G_B 2M3G_A 2M3G_C 5UK6_B 5UK6_A 5UK6_C 4TL3_B 4TL3_A
Probab=97.53  E-value=9.5e-05  Score=67.65  Aligned_cols=180  Identities=11%  Similarity=0.128  Sum_probs=0.0  Template_Neff=7.600

Q ss_pred             HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   67 LAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGI---ADIVALLAIFGVNASMIL  143 (255)
Q Consensus        67 ~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv---~Di~aLv~if~lna~mil  143 (255)
                      ...+.-..++++.++..+.   .-.+...-.|-..+.|.+||.++.++|+..++.+.|.   .+...+..+.+.+..|+.
T Consensus        38 ~l~~~i~~iaa~aY~~ma~---~~g~~~~~~r~v~~~RYi~W~iTtPlll~~L~lla~~~~~~~~~~i~~~v~~~~~mi~  114 (261)
T 1XIO_A           38 LVAMFIPIWSGLAYMAMAI---DQGKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVIT  114 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---C---------CTTHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHc---CCCccccccceehHHHHHHHHhHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q Heliorhodopsin  144 FGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKW  223 (255)
Q Consensus       144 fG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W  223 (255)
                      .|++.+... .....|..|.+||+..+.-...+.-..-......+++.-..-..+....++.+..+++.-.+.....|--
T Consensus       115 ~Gl~g~~~~-~~~~~w~~f~is~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~g~~vi  193 (261)
T 1XIO_A          115 SGLIADLSE-RDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIGPSGFGWI  193 (261)
T ss_dssp             HHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSS
T ss_pred             HHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCC


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  224 SNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       224 ~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      .... .|-.|-++.+++|...+..+...
T Consensus       194 s~~~-e~i~y~ilDv~aK~~fg~~ll~~  220 (261)
T 1XIO_A          194 NQTI-DTFLFCLLPFFSKVGFSFLDLHG  220 (261)
T ss_dssp             CHHH-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             CHHH-HHHHHHHHHHHHHHHHHHHHHHH


No 16
>4YZI_A Sensory opsin A,Archaeal-type opsin 2; membrane protein, channelrhodopsin, microbial rhodopsin; HET: RET, OLA; 2.5A {Chlamydomonas reinhardtii}; Related PDB entries: 3UG9_A 
Probab=97.51  E-value=8.5e-05  Score=69.83  Aligned_cols=181  Identities=15%  Similarity=0.128  Sum_probs=0.0  Template_Neff=7.000

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHH--HHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADI--VALLAIFGVNASMI  142 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di--~aLv~if~lna~mi  142 (255)
                      .....+.- +++++.++..+.  ..+.-...-.|..++.|.+|+.++.++|+..++.+.|...-  ..+..+.+.+..|+
T Consensus        85 ~~~l~~~i-~va~i~Y~~ma~--~~g~~~~~~~r~v~~~RYv~W~lTtPlll~~L~llag~~~~~~~~~~~lv~~~~~mI  161 (304)
T 4YZI_A           85 IYVATIEM-IKFIIEYFHEFD--EPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDIGGI  161 (304)
T ss_dssp             HHHHHHHH-HHHHHHHHHTTS--TTTSEECTTSCEECHHHHHHHHHHHHHHHHHHHTSSCCSSCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHc--CCccccCCCCccchHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q Heliorhodopsin  143 LFGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGST-SDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKG  221 (255)
Q Consensus       143 lfG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~-~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg  221 (255)
                      .+|++.+...  +...|..|.+||++.+.-...+.-.+...... .+.+.-.....+....++.+..+++.-.+-....|
T Consensus       162 v~Gl~gal~~--~~~kw~~f~~g~~~fl~v~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~v~W~lYPIvw~Ls~eG~g  239 (304)
T 4YZI_A          162 VWATTAALSK--GYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWGMFPILFILGPEGFG  239 (304)
T ss_dssp             HHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTC
T ss_pred             HHHHHHHHcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHCccccC


Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  222 KWSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       222 ~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      .-... ..+-.|-++.+++|...+..+..+
T Consensus       240 ~is~~-~e~i~y~IlDv~sK~~fg~~ll~~  268 (304)
T 4YZI_A          240 VLSVY-GSTVGHTIIDLMSKNCWGLLGHYL  268 (304)
T ss_dssp             SSCHH-HHHHHHHHHHCCCCCCHHHHHHHH
T ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHHHHHHH


No 17
>4L35_A Cruxrhodopsin-3; protein-bacterioruberin complex, seven transmembrane alpha; HET: 22B, RET; 2.1A {Haloarcula vallismortis}; Related PDB entries: 4PXK_A 4JR8_A 
Probab=97.50  E-value=0.00014  Score=65.53  Aligned_cols=182  Identities=10%  Similarity=0.075  Sum_probs=0.0  Template_Neff=8.200

Q ss_pred             HHHHHHHHHHHHHHHHHHcchhHHHHHHH--HHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   67 LAVALFLGLSALFHFIVSSGNFFKRYSAS--LMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILF  144 (255)
Q Consensus        67 ~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~--L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milf  144 (255)
                      ...+.-..++++.++..+. -+-..+.+.  =.|-.++.|++||.++.++|+..++.+.|...- .+....+++..|+.+
T Consensus        42 ~l~~~i~~ia~~~Y~~ma~-~~g~~~~~~~~~~~~~~~~RYv~W~vTtPlll~~l~~la~~~~~-~~~~~v~~~~~mi~~  119 (250)
T 4L35_A           42 IATILITAIAFVNYLAMAL-GFGLTIVEIAGEQRPIYWARYSDWLFTTPLLLYDLGLLAGADRN-TISSLVSLDVLMIGT  119 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TTTEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCCceehhccCCcccccHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHcCC-----CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  145 GWLQEKYTQP-----KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKG  219 (255)
Q Consensus       145 G~l~E~~n~~-----~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~  219 (255)
                      |++.|.....     +..+|..|.+||+..+.-...+.-..-......+++.-.....+.....+.+..+++.-.+....
T Consensus       120 Gl~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~g  199 (250)
T 4L35_A          120 GLVATLSAGSGVLSAGAERLVWWGISTAFLLVLLYFLFSSLSGRVADLPSDTRSTFKTLRNLVTVVWLVYPVWWLVGTEG  199 (250)
T ss_dssp             HHHHHHCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred             HHHHHHcccCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc


Q ss_pred             ccchhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  220 KGKWSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       220 vg~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      .|.-.. ...+-.|.++.+++|...+..+..+
T Consensus       200 ~~~i~~-~~e~i~y~i~Dv~~K~~f~~~ll~~  230 (250)
T 4L35_A          200 IGLVGI-GIETAGFMVIDLVAKVGFGIILLRS  230 (250)
T ss_dssp             TCSSCH-HHHHHHHHHHHHCCCCCHHHHHTSC
T ss_pred             ccccCh-HHHHHHHHHHHHHHHHHHHHHHHHh


No 18
>2KSY_A Sensory rhodopsin II; membrane proteins, NMR spectroscopy, receptors; HET: RET; NMR {Natronomonas pharaonis}; Related PDB entries: 5JJJ_A 5JJF_A 2F95_A 5JJE_A 5JJN_A 5JJN_C 2F93_A 4GYC_A 1GUE_A 1H68_A 3QDC_A 1GU8_A 3QAP_A 1H2S_A 1JGJ_A
Probab=97.49  E-value=0.00011  Score=66.44  Aligned_cols=180  Identities=12%  Similarity=0.148  Sum_probs=0.0  Template_Neff=7.900

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILF  144 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milf  144 (255)
                      .....++-..++++.++..+.   ...+...=.|.....|.+|+.++.++|+..++.+.|. |.-.+....+++..|+.+
T Consensus        36 ~~~l~~~i~~ia~~~Y~~ma~---~~g~~~~~~r~~~~~RYv~W~~TtPlll~~l~~l~~~-~~~~i~~~v~~~~~mi~~  111 (247)
T 2KSY_A           36 YYVTLVGISGIAAVAYAVMAL---GVGWVPVAERTVFVPRYIDWILTTPLIVYFLGLLAGL-DSREFGIVITLNTVVMLA  111 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT---TTTEEEETTEEEEHHHHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc---CCCCcccccccccHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q Heliorhodopsin  145 GWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWS  224 (255)
Q Consensus       145 G~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~  224 (255)
                      |+..|...  +..+|..|.+||+..+...-.+.-.........+++.-..-..+.....+.+..+++.-.+.....|.. 
T Consensus       112 gl~g~~~~--~~~~w~~~~~~~~~~~~v~~~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~G~~~i-  188 (247)
T 2KSY_A          112 GFAGAMVP--GIERYALFGMGAVAFIGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVVLWAIYPFIWLLGPPGVALL-  188 (247)
T ss_dssp             HHHHHTCS--SSTHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTCHHHHHHHHHHHHHHHHHHTTHHHHHHHSTTTTCCS-
T ss_pred             HHHHHhCc--cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHCccccCCC-


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  225 NYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       225 dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      +-...+-.|.++.+++|...+..+...
T Consensus       189 s~~~e~i~y~i~Di~~K~~fg~~ll~~  215 (247)
T 2KSY_A          189 TPTVDVALIVYLDLVTKVGFGFIALDA  215 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHH


No 19
>4KNF_E Blue-light absorbing proteorhodopsin; Membrane, Proton transport, ion transport; HET: RET; 2.6A {gamma proteobacterium 'Hot 75m4'}; Related PDB entries: 4KNF_A 4KNF_C 4KNF_B 4KNF_D 4KLY_E 4KLY_C 4KLY_D 4KLY_A 4KLY_B 2L6X_A
Probab=97.48  E-value=0.00025  Score=64.91  Aligned_cols=178  Identities=14%  Similarity=0.111  Sum_probs=0.0  Template_Neff=7.600

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHH---HHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADI---VALLAIFGVNASM  141 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di---~aLv~if~lna~m  141 (255)
                      .....+.=..+++++++..+.  .+.    +-.+..+..|.++|.++.++|+..++.+.|...-   ..+..+.+.+..|
T Consensus        62 ~~~l~~~i~~ia~~aY~~ma~--~~~----~~~~~~~~~RYv~W~vTtPlll~~L~llag~~~~~~~~~~~~lv~~~~~M  135 (261)
T 4KNF_E           62 SLTVSGLITGIAFWHYLYMRG--VWI----DTGDTPTVFRYINWLLTVPLLVVEFYLILAACTSVAASLFKKLLAGSLVM  135 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--HHH----HTCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--ccc----ccCCCccHHHHHHHHhHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q Heliorhodopsin  142 ILFGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLI-YVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGK  220 (255)
Q Consensus       142 ilfG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~-~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~v  220 (255)
                      +.+|++.|...   ..+|..|.+||++.+.-+..+.- ..-......+++.-.....+.....+.+..+++.-.+..-+.
T Consensus       136 i~~Gl~ga~~~---~~kw~~f~~g~~~fl~v~~~l~~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~~g  212 (261)
T 4KNF_E          136 LGAGFAGEAGL---APVLPAFIIGMAGWLYMIYELYMGEGKAAVSTASPAVNSAYNAMMMIIVVGWAIYPAGYAAGYLMG  212 (261)
T ss_dssp             HHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHHHTSGGGGCCCCSCHHHHHHHHHHHHCCCCCTTHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC


Q ss_pred             cchhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  221 GKWSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       221 g~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      |..-+-...+-.|-++.+++|...+..+..+
T Consensus       213 g~~i~~~~e~i~y~ilDv~aK~~fg~~ll~~  243 (261)
T 4KNF_E          213 GEGVYASNLNLIYNLADFVNKILFGLIIWNV  243 (261)
T ss_dssp             C--CCHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHH


No 20
>4QI1_B Bacteriorhodopsin-I; Bacteriorhodopsin, proton pump, Membrane, MEMBRANE; HET: RET, MPG; 1.85A {Haloquadratum walsbyi}; Related PDB entries: 5ITC_B 5ITC_C 5ITC_A 5ITE_B 5ITE_C 5ITE_A 5KKH_A 5KKH_B 5KKH_C 4QID_A 4QID_B 4QI1_A 4QI1_C 4WAV_B 4WAV_A
Probab=97.48  E-value=0.00035  Score=63.95  Aligned_cols=225  Identities=14%  Similarity=0.129  Sum_probs=0.0  Template_Neff=7.700

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin    4 PTVKEIKSLQNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFIV   83 (255)
Q Consensus         4 ~~~~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l~   83 (255)
                      |..-.....-.+..+......+.+++....+.+.+.|-.+.+                    ....++-..++++.++..
T Consensus         8 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~R~~--------------------~~l~~~i~~ia~~aY~~m   67 (262)
T 4QI1_B            8 MSSLGVEGEGIWLALGTIGMLLGMLYFIADGLDVQDPRQKEF--------------------YVITILIPAIAAASYLSM   67 (262)
T ss_dssp             ---CCSSSTHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------------HHHHHHHHHHHHHHHHHH
T ss_pred             hHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHH--------------------HHHHHHHHHHHHHHHHHH


Q ss_pred             HcchhHHHHHHHHHcCCC--chHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHH
Q Heliorhodopsin   84 SSGNFFKRYSASLMKNQN--IFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILFGWLQEKYTQPKDGDLLP  161 (255)
Q Consensus        84 a~p~~~~~Y~~~L~~g~N--~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milfG~l~E~~n~~~~~~~~p  161 (255)
                      +.-.........=.++++  +.|.+||.++.++|+..++.+.|. +...+..+.+++..|+.+|+..+... ....+|..
T Consensus        68 a~g~g~~~~~~~~~~~r~~~~~RYv~W~vTtPlll~~L~lla~~-~~~~i~~~v~~~~~mi~~Gl~ga~~~-~~~~kw~~  145 (262)
T 4QI1_B           68 FFGFGLTEVSLANGRVVDVYWARYADWLFTTPLLLLDIGLLAGA-SQRDIGALVGIDAFMIVTGLVATLTK-VVVARYAF  145 (262)
T ss_dssp             HTTTTCEEEECTTSCEEEECTHHHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred             HcCCCceeeecccCCeeeeeHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHcc-cchhHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHHHHHHHHH
Q Heliorhodopsin  162 FWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYIVLSLVAK  241 (255)
Q Consensus       162 f~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YIvLSlvaK  241 (255)
                      |.+||+..+.....+.--+-......+++.-..-........+.+..+++.-.+--...|.- +-...+-.|-++.+++|
T Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~G~~~i-~~~~e~i~~~vlDi~~K  224 (262)
T 4QI1_B          146 WTISTISMVFLLYYLVAVFGEAVSDADEDTRSTFNALRNIILVTWAIYPVAWLVGTEGLALT-GLYGETLLFMVLDLVAK  224 (262)
T ss_dssp             HHHHHHHHHHHHHHCCCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSS-CHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccc-CHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHhc
Q Heliorhodopsin  242 SALAWQIFSG  251 (255)
Q Consensus       242 s~LAW~vf~g  251 (255)
                      ...+..+...
T Consensus       225 ~~f~~~ll~~  234 (262)
T 4QI1_B          225 VGFGFILLRS  234 (262)
T ss_dssp             CCHHHHHHTC
T ss_pred             HHHHHHHHHH


No 21
>3DDL_A Xanthorhodopsin; rhodopsin, carotenoid, ion pump, light-harvesting; HET: SXN, UNL, PCW, RET, PX4; 1.9A {Salinibacter ruber}; Related PDB entries: 3DDL_B 
Probab=97.45  E-value=0.0017  Score=59.77  Aligned_cols=228  Identities=13%  Similarity=0.089  Sum_probs=0.0  Template_Neff=7.700

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHH
Q Heliorhodopsin    2 AKPTVKEIKSLQNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHF   81 (255)
Q Consensus         2 ~~~~~~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~   81 (255)
                      ....+-+..-...+..+....+++..+.......+.+ |-.+.+                    ....++=..+++++++
T Consensus         6 ~~~~~~~~~~~~~~l~~~~~~m~~~~l~~~~~~~~~~-~~~R~~--------------------~~l~~~i~~va~~aY~   64 (273)
T 3DDL_A            6 PTLTPGQYSLVFNMFSFTVATMTASFVFFVLARNNVA-PKYRIS--------------------MMVSALVVFIAGYHYF   64 (273)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC-GGGHHH--------------------HHHHHHHHHHHHHHHH
T ss_pred             CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chhHHH--------------------HHHHHHHHHHHHHHHH


Q ss_pred             HHHcchhHHHHHHHHH------cCCCc--hHHHHHHHhHHHHHHHHHHHhchhHH---HHHHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   82 IVSSGNFFKRYSASLM------KNQNI--FRWVEYSLSSSVMIVLIAQICGIADI---VALLAIFGVNASMILFGWLQEK  150 (255)
Q Consensus        82 l~a~p~~~~~Y~~~L~------~g~N~--~RW~EYsiSsSiMivlIa~l~Gv~Di---~aLv~if~lna~milfG~l~E~  150 (255)
                      ..++  ..+.=....+      +...+  .|++|+.++.++|+..++.+.|...-   .....+.+.+..|+.+|++.|.
T Consensus        65 ~ma~--~~g~~~~~~~~~~~~~~~~~~~~~RYv~W~iTtPlll~~L~llag~~~~~~~~~~~~~v~~~~~mi~~Gl~g~~  142 (273)
T 3DDL_A           65 RITS--SWEAAYALQNGMYQPTGELFNDAYRYVDWLLTVPLLTVELVLVMGLPKNERGPLAAKLGFLAALMIVLGYPGEV  142 (273)
T ss_dssp             HHHH--HHHHTEEECSSSEEECSCCCCCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHh--cchhHHhhccCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHh


Q ss_pred             HcCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccch---h-
Q Heliorhodopsin  151 YTQP--KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKW---S-  224 (255)
Q Consensus       151 ~n~~--~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W---~-  224 (255)
                      ....  ...+|..|.+||+..+.-...+.-..-......+.+.-..--.+.....+.+..+++.-.+-....+..   . 
T Consensus       143 ~~~~~~~~~~w~~~~is~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~g~~g~~~~~i  222 (273)
T 3DDL_A          143 SENAALFGTRGLWGFLSTIPFVWILYILFTQLGDTIQRQSSRVSTLLGNARLLLLATWGFYPIAYMIPMAFPEAFPSNTP  222 (273)
T ss_dssp             CSCCCTTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CTTCH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCCCCCC


Q ss_pred             -hHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q Heliorhodopsin  225 -NYLRGERAYIVLSLVAKSALAWQIFSGT  252 (255)
Q Consensus       225 -dYl~GE~~YIvLSlvaKs~LAW~vf~g~  252 (255)
                       |-...+-.|-++.+++|...+..+..+.
T Consensus       223 ~~~~~e~i~y~vlDv~aK~~fg~~ll~~~  251 (273)
T 3DDL_A          223 GTIVALQVGYTIADVLAKAGYGVLIYNIA  251 (273)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHH


No 22
>3WQJ_A Archaerhodopsin-2; 7 trans-membrane helices, light-driven proton; HET: SQL, L4P, L2P, 22B, RET, L3P; 1.8A {Halobacterium}; Related PDB entries: 1UAZ_B 1UAZ_A 2EI4_A 2Z55_D 2Z55_B 2Z55_E 2Z55_A 1VGO_A 1VGO_B
Probab=97.41  E-value=0.00032  Score=64.03  Aligned_cols=214  Identities=13%  Similarity=0.173  Sum_probs=0.0  Template_Neff=7.700

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHHHHcchhHHHHHH
Q Heliorhodopsin   15 FNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFIVSSGNFFKRYSA   94 (255)
Q Consensus        15 ~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~   94 (255)
                      |-..+....++.+++.+..+.+.+.|..+.+                    ....+.=..++++.++..++-........
T Consensus        22 w~~~~~~~~~~~~~~f~~~~~~~~~~~~R~~--------------------~~l~~~i~~ia~i~Y~~ma~g~g~~~~~~   81 (259)
T 3WQJ_A           22 WLGIGTLLMLIGTFYFIARGWGVTDKEAREY--------------------YAITILVPGIASAAYLAMFFGIGVTEVEL   81 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHSTTCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH--------------------HHHHHHHHHHHHHHHHHHHcCCCceeeec


Q ss_pred             HHHcCCC--chHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Q Heliorhodopsin   95 SLMKNQN--IFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILFGWLQEKYTQPKDGDLLPFWFGCIAGIVP  172 (255)
Q Consensus        95 ~L~~g~N--~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milfG~l~E~~n~~~~~~~~pf~~G~iaGivP  172 (255)
                      +-.+++.  +.|.+||.++.++|+..++.+.|..=- .+....+.+..|+.+|++.+.... ...+|..|.+||+..+.-
T Consensus        82 ~~~~~r~v~~~RYv~W~vTtPlll~~l~lla~~~~~-~i~~~v~~~~~mi~~G~~ga~~~~-~~~~w~~~~~s~~~f~~v  159 (259)
T 3WQJ_A           82 ASGTVLDIYYARYADWLFTTPLLLLDLALLAKVDRV-TIGTLIGVDALMIVTGLIGALSKT-PLARYTWWLFSTIAFLFV  159 (259)
T ss_dssp             TTSCEEEECTHHHHHHHHHHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeeeeeHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  173 WIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       173 Wi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      ...+.-.+-......+++.-..-..+.....+.+..+++.-.+.....|.- +-...+..|-++.+++|...+..+...
T Consensus       160 ~~~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~g~~~i-~~~~~~i~y~ilDv~~K~~fg~~ll~~  237 (259)
T 3WQJ_A          160 LYYLLTSLRSAAAKRSEEVRSTFNTLTALVAVLWTAYPILWIVGTEGAGVV-GLGIETLAFMVLDVTAKVGFGFVLLRS  237 (259)
T ss_dssp             HHHCCCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCS-CHHHHHHHHHHHHHCCCCCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCCcC-CHHHHHHHHHHHHHHHHHHHHHHHHHH


No 23
>1E12_A HALORHODOPSIN; ION PUMP, CHLORIDE PUMP, MEMBRANE; HET: OLC, RET, PLM; 1.8A {HALOBACTERIUM SALINARUM} SCOP: f.13.1.1; Related PDB entries: 2JAG_A 2JAF_A 5AHY_A 5AHZ_A 5G36_A 
Probab=97.38  E-value=0.0012  Score=60.05  Aligned_cols=219  Identities=13%  Similarity=0.095  Sum_probs=0.0  Template_Neff=7.800

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHHHHcc
Q Heliorhodopsin    7 KEIKSLQNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFIVSSG   86 (255)
Q Consensus         7 ~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l~a~p   86 (255)
                      ++-+.=..++.+...+..+-+++.+..+.+.+.|..+.+                    ....++-..+++++++..++ 
T Consensus         3 ~~~~~g~~~lw~~~~~~~~~~~~f~~~~~~~~~~~~r~~--------------------~~l~~~i~~va~~aY~~ma~-   61 (253)
T 1E12_A            3 RENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLI--------------------WGATLMIPLVSISSYLGLLS-   61 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHH--------------------HHHHHHHHHHHHHHHHHHHH-
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHH--------------------HHHHHHHHHHHHHHHHHHHc-


Q ss_pred             hhHHHHH--------HHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q Heliorhodopsin   87 NFFKRYS--------ASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILFGWLQEKYTQPKDGD  158 (255)
Q Consensus        87 ~~~~~Y~--------~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milfG~l~E~~n~~~~~~  158 (255)
                      -.-..+.        +.-.|...+.|.+|+.++.++|+..++.+.|..-- .+..+.+.+..|+.+|++.+.........
T Consensus        62 g~g~~~~~~~~~~~~~~~~r~~~~~RYv~W~lTtPlll~~l~lla~~~~~-~~~~~i~~~~~mi~~Gl~ga~~~~~~~~k  140 (253)
T 1E12_A           62 GLTVGMIEMPAGHALAGEMVRSQWGRYLTWALSTPMILLALGLLADVDLG-SLFTVIAADIGMCVTGLAAAMTTSALLFR  140 (253)
T ss_dssp             TTTCEEEEBCTTSTTBTCEEEECHHHHHHHHHHHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred             CCCceeeeccccccccCCceeehHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHcCCccchH


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHHHHHH
Q Heliorhodopsin  159 LLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYIVLSL  238 (255)
Q Consensus       159 ~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YIvLSl  238 (255)
                      |..|.+|+++.+.-...+.-.......  +.+.-..-..+....++.+..+++.-.+-....|.-.+-...|-.|-++.+
T Consensus       141 w~~~~~s~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~G~~~i~~~~~e~i~y~vlDv  218 (253)
T 1E12_A          141 WAFYAISCAFFVVVLSALVTDWAASAS--SAGTAEIFDTLRVLTVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDV  218 (253)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSSCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHCcccccccCchHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHH
Q Heliorhodopsin  239 VAKSALAWQIF  249 (255)
Q Consensus       239 vaKs~LAW~vf  249 (255)
                      ++|...+..+.
T Consensus       219 ~~K~~f~~~ll  229 (253)
T 1E12_A          219 FAKYVFAFILL  229 (253)
T ss_dssp             CCCCCHHHHHH
T ss_pred             hHHHHHHHHHH


No 24
>4JQ6_B Proteorhodopsin; retinylidene protein, ion transport, PROTON; HET: LI1, RET; 2.31A {uncultured bacterium}; Related PDB entries: 4JQ6_C 4JQ6_A
Probab=97.37  E-value=0.00066  Score=60.65  Aligned_cols=176  Identities=14%  Similarity=0.169  Sum_probs=0.0  Template_Neff=8.300

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchh---HHHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIA---DIVALLAIFGVNASM  141 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~---Di~aLv~if~lna~m  141 (255)
                      .....+.=..+|++.++..+.  .++.    =.+..+..|.+|+.++.++|+..+..+.|..   +........+.+..|
T Consensus        43 ~~~l~~~i~~ia~~~Y~~ma~--~~~~----~g~~~~~~RYv~W~ittPlll~~l~~l~~~~~~~~~~~~~~~v~~~~~m  116 (235)
T 4JQ6_B           43 SLTVAGLVTGVAFWHYLYMRG--VWIY----AGETPTVFRYIDWLITVPLQIIEFYLIIAAVTAISSAVFWKLLIASLVM  116 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--CCCC----CCSCCHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hhHh----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  142 ILFGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGS--TSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKG  219 (255)
Q Consensus       142 ilfG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~--~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~  219 (255)
                      +..|++.|...   ...|..|.+||++.+.-...+.........  ..+.+.-.....+....++.+..+++.-.+-...
T Consensus       117 i~~g~~~a~~~---~~~w~~~~~~~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~g  193 (235)
T 4JQ6_B          117 LIGGFIGEAGL---GDVVVWWIVGMIAWLYIIYEIFLGETAKANAGSGNAASQQAFNTIKWIVTVGWAIYPIGYAWGYFG  193 (235)
T ss_dssp             HHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHccc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc


Q ss_pred             ccchhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  220 KGKWSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       220 vg~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      .+-  |-...|-.|-++.+++|...+..+..+
T Consensus       194 ~~i--~~~~~~i~y~ilDv~~K~~f~~~ll~~  223 (235)
T 4JQ6_B          194 DGL--NEDALNIVYNLADLINKAAFGLAIWAA  223 (235)
T ss_dssp             SSC--CHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_pred             cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH


No 25
>4Y9H_A human heart fatty acid binding; bacteriorhodopsin, complex, membrane protein, Cell; HET: D12, R16, D10, RET; 1.43A {Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)}; Related PDB entries: 4X31_A 1E0P_A 4X32_A 1S52_A 1S52_B 1S53_B 1S53_A 1S51_B 1S51_A 1F50_A 5J7A_A 1F4Z_A 1S54_A 1S54_B 3T45_B 3T45_A 3T45_C 1C3W_A 1L0M_A 1C8S_A
Probab=97.35  E-value=0.00025  Score=62.98  Aligned_cols=180  Identities=11%  Similarity=0.113  Sum_probs=0.0  Template_Neff=8.300

Q ss_pred             HHHHHHHHHHHHHHHHHHcchhHHHHHHHH---HcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   67 LAVALFLGLSALFHFIVSSGNFFKRYSASL---MKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMIL  143 (255)
Q Consensus        67 ~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L---~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~mil  143 (255)
                      ...++=..++++.|+..+.  .++.-..+-   .|...+.|.+|+.++.++|+...+.+.|. |--.+..+.+.+..|+.
T Consensus        39 ~l~~~i~~va~~~Y~~ma~--~~g~~~~~~~~~~~~~~~~RYv~W~ittPlll~~l~~l~~~-~~~~~~~~v~~~~~mi~  115 (226)
T 4Y9H_A           39 AITTLVPAIAFTMYLSMLL--GYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDA-DQGTILALVGADGIMIG  115 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--TCSEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHc--CCCceeeecCCCcCeeeHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q Heliorhodopsin  144 FGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKW  223 (255)
Q Consensus       144 fG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W  223 (255)
                      .|++.|..+ .+..+|..|.+||++.+.-.-.+...........+++....-..+.....+.+..+++.-.+--...|.-
T Consensus       116 ~g~~g~~~~-~~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~g~~~i  194 (226)
T 4Y9H_A          116 TGLVGALTK-VYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIV  194 (226)
T ss_dssp             HHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCS
T ss_pred             HHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCC


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  224 SNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       224 ~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                       |-...+-.|-++.+++|...+..+..+
T Consensus       195 -~~~~~~~~y~ilDv~~K~~f~~~ll~~  221 (226)
T 4Y9H_A          195 -PLNIETLLFMVLDVSAKVGFGLILLRS  221 (226)
T ss_dssp             -CHHHHHHHHHHHHHCCCCCHHHHHHTS
T ss_pred             -CHHHHHHHHHHHHHHhHHHHHHHHHHH


No 26
>4QRY_A Halorhodopsin; 7 transmembrane helices, light-driven chloride; HET: BNG, BR, L2P, RET; 2.2A {Natronomonas pharaonis}; Related PDB entries: 4QRY_G 3VVK_D 3VVK_A 3VVK_C 3VVK_B 3VVK_E 3VVK_F 4QRY_B 4QRY_C 4QRY_F 4QRY_E 3QBL_D 3QBL_B 3QBL_A 3QBG_B 3QBG_D 3QBG_A 3QBI_B 3QBI_D 3QBI_A 3QBK_B 3QBK_D 3QBK_A 3ABW_A 3ABW_D 3ABW_B 5ETZ_D 5ETZ_A 3A7K_A 5ETZ_B 3A7K_B 3A7K_D 5B0W_E 5B0W_F 5B0W_G 5B0W_A 5B0W_B 5B0W_D
Probab=97.34  E-value=0.0011  Score=61.82  Aligned_cols=214  Identities=14%  Similarity=0.104  Sum_probs=0.0  Template_Neff=7.200

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHHHHcchhHHHH
Q Heliorhodopsin   13 QNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFIVSSGNFFKRY   92 (255)
Q Consensus        13 r~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~~Y   92 (255)
                      +.+-.+......+.+++.+..+.+.+.|-.+.+                    ....++-..++++.++..++ -+-..+
T Consensus        35 ~~~lw~~~~~m~l~~l~f~~~s~~~~~~~~R~~--------------------~~l~~~i~~iaa~aY~~ma~-g~G~~~   93 (291)
T 4QRY_A           35 ASSLYINIALAGLSILLFVFMTRGLDDPRAKLI--------------------AVSTILVPVVSIASYTGLAS-GLTISV   93 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH-TTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCccchHH--------------------HHHHHHHHHHHHHHHHHHHc-CCCcee


Q ss_pred             H------------------HHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q Heliorhodopsin   93 S------------------ASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILFGWLQEKYTQP  154 (255)
Q Consensus        93 ~------------------~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milfG~l~E~~n~~  154 (255)
                      .                  +.=.|...+.|.+||.++.++|+..++.+.|...- .+....+.+..|+.+|++.|.....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~r~v~~~RYv~W~lTtPlll~~L~llag~~~~-~i~~~v~~~~~mi~~Gl~ga~~~~~  172 (291)
T 4QRY_A           94 LEMPAGHFAEGSSVMLGGEEVDGVVTMWGRYLTWALSTPMILLALGLLAGSNAT-KLFTAITFDIAMCVTGLAAALTTSS  172 (291)
T ss_dssp             ECCCTTCTTTTCBCCBTTBCCBSEEECTHHHHHHHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             eecccccccCCceeecCCCccCceeehHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHhCCC


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHH
Q Heliorhodopsin  155 KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYI  234 (255)
Q Consensus       155 ~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YI  234 (255)
                      ....|..|.+||++.+.-...+.-...  ....+.+.-..-..+....++.+..+++.-.+-....|.- +-...+-.|-
T Consensus       173 ~~~kw~~f~i~~~~fl~v~~~l~~~~~--~~a~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~G~~~i-~~~~e~i~y~  249 (291)
T 4QRY_A          173 HLMRWFWYAISCACFIVVLYILLVEWA--QDAKAAGTADIFSTLKLLTVVMWLGYPIVWALGVEGVAVL-PVGYTSWAYS  249 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHBTTTTCSB-CHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCC-ChHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHhc
Q Heliorhodopsin  235 VLSLVAKSALAWQIFSG  251 (255)
Q Consensus       235 vLSlvaKs~LAW~vf~g  251 (255)
                      ++.+++|...+..+...
T Consensus       250 ilDv~~K~~fg~~ll~~  266 (291)
T 4QRY_A          250 ALDIVAKYIFAFLLLNY  266 (291)
T ss_dssp             HHHCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH


No 27
>5B0W_A Halorhodopsin; seven trans-membrane helices, retinylidene protein; HET: BNG, L3P, RET, 22B; 1.7A {Natronomonas pharaonis DSM 2160}; Related PDB entries: 4QRY_G 3VVK_D 3VVK_A 3VVK_C 3VVK_B 3VVK_E 3VVK_F 4QRY_A 4QRY_B 4QRY_C 4QRY_F 4QRY_E 3QBL_D 3QBL_B 3QBL_A 3QBG_B 3QBG_D 3QBG_A 3QBI_B 3QBI_D 3QBI_A 3QBK_B 3QBK_D 3QBK_A 3ABW_A 3ABW_D 3ABW_B 5ETZ_D 5ETZ_A 3A7K_A 5ETZ_B 3A7K_B 3A7K_D 5B0W_E 5B0W_F 5B0W_G 5B0W_B 5B0W_D
Probab=97.34  E-value=0.0011  Score=61.82  Aligned_cols=214  Identities=14%  Similarity=0.104  Sum_probs=0.0  Template_Neff=7.200

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCceeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHHHHHHHHHHHHcchhHHHH
Q Heliorhodopsin   13 QNFNRIAGVFHLLQMLAVLALANDFALPMTGTYLNGPPGTTFSAPVVILETPVGLAVALFLGLSALFHFIVSSGNFFKRY   92 (255)
Q Consensus        13 r~~N~iag~lhliq~i~~l~l~~~~~~pv~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~~Y   92 (255)
                      +.+-.+......+.+++.+..+.+.+.|-.+.+                    ....++-..++++.++..++ -+-..+
T Consensus        35 ~~~lw~~~~~m~l~~l~f~~~s~~~~~~~~R~~--------------------~~l~~~i~~iaa~aY~~ma~-g~G~~~   93 (291)
T 5B0W_A           35 ASSLYINIALAGLSILLFVFMTRGLDDPRAKLI--------------------AVSTILVPVVSIASYTGLAS-GLTISV   93 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH-TTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCccchHH--------------------HHHHHHHHHHHHHHHHHHHc-CCCcee


Q ss_pred             H------------------HHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q Heliorhodopsin   93 S------------------ASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILFGWLQEKYTQP  154 (255)
Q Consensus        93 ~------------------~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milfG~l~E~~n~~  154 (255)
                      .                  +.=.|...+.|.+||.++.++|+..++.+.|...- .+....+.+..|+.+|++.|.....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~r~v~~~RYv~W~lTtPlll~~L~llag~~~~-~i~~~v~~~~~mi~~Gl~ga~~~~~  172 (291)
T 5B0W_A           94 LEMPAGHFAEGSSVMLGGEEVDGVVTMWGRYLTWALSTPMILLALGLLAGSNAT-KLFTAITFDIAMCVTGLAAALTTSS  172 (291)
T ss_dssp             ECCCTTCTTTTCBCCBTTBCCBSEEECTHHHHHHHHHHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             eecccccccCCceeecCCCccCceeehHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHhCCC


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHHH
Q Heliorhodopsin  155 KDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWSNYLRGERAYI  234 (255)
Q Consensus       155 ~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~dYl~GE~~YI  234 (255)
                      ....|..|.+||++.+.-...+.-...  ....+.+.-..-..+....++.+..+++.-.+-....|.- +-...+-.|-
T Consensus       173 ~~~kw~~f~i~~~~fl~v~~~l~~~~~--~~a~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~G~~~i-~~~~e~i~y~  249 (291)
T 5B0W_A          173 HLMRWFWYAISCACFIVVLYILLVEWA--QDAKAAGTADIFSTLKLLTVVMWLGYPIVWALGVEGVAVL-PVGYTSWAYS  249 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHBTTTTCSB-CHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCC-ChHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHhc
Q Heliorhodopsin  235 VLSLVAKSALAWQIFSG  251 (255)
Q Consensus       235 vLSlvaKs~LAW~vf~g  251 (255)
                      ++.+++|...+..+...
T Consensus       250 ilDv~~K~~fg~~ll~~  266 (291)
T 5B0W_A          250 ALDIVAKYIFAFLLLNY  266 (291)
T ss_dssp             HHHCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH


No 28
>1R84_A Bacteriorhodopsin; proton pump, membrane protein, retinal; HET: RET; NMR {Halobacterium salinarum} SCOP: f.13.1.1; Related PDB entries: 4XXJ_B 4XXJ_C 4XXJ_A 4HYX_B 2ZZL_A 1M0K_A 2ZFE_A 1M0L_A 1M0M_A 4HWL_A 4HWL_B 4HYX_A 3VHZ_A 3VI0_A 5VN9_B 5VN7_B 5VN7_A 5VN9_A 4FPD_A 1PXS_A 1PXS_B 3HAS_A 2I21_A 3HAQ_A 3HAO_A 3HAO_B 1Q5J_B 1VJM_A 1Q5I_A 1S8J_A 2I20_A 3HAR_A 3COC_B 3COC_A 1Q5J_A 1Q5I_B 1S8L_A 1P8H_A 5BR2_A 5B35_A 1R2N_A 5B34_A 1UCQ_A 5BR5_A 1JV7_A 1C8R_A 1P8I_A 1PY6_B 1PY6_A 2NTU_A 2NTW_A 1TN5_A 3UTY_A 3UTY_B 1JV6_A 1TN5_B 3UTW_A 2WJL_A 1PXR_B 1PXR_A 1TN0_B 3COD_B 3COD_A 3UTV_A 2I1X_A 1TN0_A 1O0A_A 2WJK_A 3UTX_B 3UTX_A 1MGY_A 4OV0_A 1R3P_. 1P8U_A 3HAN_A 3HAP_A 1QM8_A 1X0K_1 3MBV_A 5H2N_A 3NS0_A 4MD1_A 1DZE_A 5H2P_A 5H2M_A 1QHJ_A 3NSB_A 5H2H_A 5H2I_A 1IW9_A 5H2J_A 5A44_A 5H2L_A 4MD2_A 1IW6_A 5B6Z_A 5B6X_A 5A45_A 5B6V_A 5B6Y_A 1QKP_A 1QKO_A 1IXF_A 1AP9_A 1X0S_A 1FBB_A 5B6W_A 1X0I_1 5H2K_A 5H2O_A 1FBK_A 2BRD_A 1AT9_A 1BRX_A 1BM1_A 2AT9_A 1BRD_A 1CWQ_B 1CWQ_A 1BRR_B 1BRR_A 1BRR_C 1XJI_A 1KGB_A 1KG8_A 1KME_A 1KME_B 1KG9_A
Probab=97.32  E-value=0.00029  Score=62.85  Aligned_cols=181  Identities=11%  Similarity=0.105  Sum_probs=0.0  Template_Neff=8.200

Q ss_pred             HHHHHHHHHHHHHHHHHHcchhHHHHHHH--HHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   67 LAVALFLGLSALFHFIVSSGNFFKRYSAS--LMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILF  144 (255)
Q Consensus        67 ~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~--L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milf  144 (255)
                      ...+.-..++++.|+..+. -+-..+.+.  -.|...+.|.+|+.++.++|+..+..+.|. |...+....+.+..|+.+
T Consensus        44 ~l~~~i~~va~~~Y~~ma~-g~g~~~~~~~~~~~~~~~~RYv~W~ittPlll~~l~~la~~-~~~~~~~~v~~~~~mi~~  121 (232)
T 1R84_A           44 AITTLVPAIAFTMYLSMLL-GYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDA-DQGTILALVGADGIMIGT  121 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-STTCEEEEETTEEEEECTHHHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCCceeeecCCCCccchHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q Heliorhodopsin  145 GWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWS  224 (255)
Q Consensus       145 G~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~  224 (255)
                      |++.+..+ .+..+|..|.+||...+.-...+....-......+++.-..-..+.....+.+..+++.-.+--.+.|.- 
T Consensus       122 g~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~g~~~i-  199 (232)
T 1R84_A          122 GLVGALTK-VYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIV-  199 (232)
T ss_dssp             HHHHHHCS-SHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSTTS-
T ss_pred             HHHHHHcc-cchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCC-


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  225 NYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       225 dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      |-...+..|-++.+++|...+..+..+
T Consensus       200 ~~~~e~i~y~ilDv~~K~~f~~~ll~~  226 (232)
T 1R84_A          200 PLNIETLLFMVLDVSAKVGFGLILLRS  226 (232)
T ss_dssp             CHHHHHHHHHHHHHCCCCCHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHHHHHH


No 29
>2Z55_A Archaerhodopsin-2; retinal protein, bacterioruberin, TRANSPORT PROTEIN; HET: 22B, GAL, L2P, MAN, GLC, RET; 2.5A {Halobacterium sp. AUS-2}; Related PDB entries: 3WQJ_A 1UAZ_B 1UAZ_A 2EI4_A 2Z55_D 2Z55_B 2Z55_E 1VGO_A 1VGO_B
Probab=97.31  E-value=0.00022  Score=64.72  Aligned_cols=182  Identities=14%  Similarity=0.189  Sum_probs=0.0  Template_Neff=7.900

Q ss_pred             HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCC--chHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   67 LAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQN--IFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILF  144 (255)
Q Consensus        67 ~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N--~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milf  144 (255)
                      ...++-..++++.++..++-..+...+.+-.+++.  +.|.+|+.++.++|+..++.+.| .+.-.+..+.+.+..|+.+
T Consensus        48 ~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~~v~~~RYi~W~vTtPlll~~l~~la~-~~~~~i~~~v~~~~~mi~~  126 (253)
T 2Z55_A           48 AITILVPGIASAAYLAMFFGIGVTEVELASGTVLDIYYARYADWLFTTPLLLLDLALLAK-VDRVTIGTLIGVDALMIVT  126 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEECTTSCEEEECTHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCceeeeccCCCeeeeeHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q Heliorhodopsin  145 GWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKWS  224 (255)
Q Consensus       145 G~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W~  224 (255)
                      |++.|... ....+|..|.+||+..+.-...+.-.+-......+++.-..--.+....++.+..+++.-.+.....|.- 
T Consensus       127 G~~g~~~~-~~~~~w~~~~~~~~~f~~v~~~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~g~~~i-  204 (253)
T 2Z55_A          127 GLIGALSK-TPLARYTWWLFSTIAFLFVLYYLLTSLRSAAAKRSEEVRSTFNTLTALVAVLWTAYPILWIVGTEGAGVV-  204 (253)
T ss_dssp             HHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTSSCCS-
T ss_pred             HHHHHHCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCCcC-


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  225 NYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       225 dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      +-...+-.|-++.+++|...+..+...
T Consensus       205 ~~~~e~i~y~ilDv~~K~~fg~~l~~~  231 (253)
T 2Z55_A          205 GLGIETLAFMVLDVTAKVGFGFVLLRS  231 (253)
T ss_dssp             CHHHHHHHHHHHHHCCCCCHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH


No 30
>3T45_C Bacteriorhodopsin (GROUND STATE); Bacteriorhodopsins, Sensory Rhodopsin II, Microbial; HET: LI1, RET; 3.01A {Halobacterium sp. NRC-1}; Related PDB entries: 4X31_A 1E0P_A 4X32_A 1S52_A 1S52_B 1S53_B 1S53_A 1S51_B 1S51_A 1F50_A 5J7A_A 1F4Z_A 1S54_A 1S54_B 4Y9H_A 3T45_B 3T45_A 1C3W_A 1L0M_A 1C8S_A
Probab=97.31  E-value=0.00032  Score=62.26  Aligned_cols=181  Identities=9%  Similarity=0.072  Sum_probs=0.0  Template_Neff=8.300

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHH---HHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSAS---LMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASM  141 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~---L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~m  141 (255)
                      .....++=..++++.|+..++  .++.-..+   =.|...+.|.+|+.++.++|+..++.+.|. |...+....+.+..|
T Consensus        36 ~~~l~~~i~~va~~~Y~~ma~--~~g~~~~~~~~~~~~~~~~RYv~W~ittPlll~~l~~la~~-~~~~~~~~v~~~~~m  112 (225)
T 3T45_C           36 FYAITTLVPAIAFTMYLSMLL--GYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDA-DQGTILALVGADGIM  112 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--TTTEEEEECSSSEEEEETHHHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc--CCCceeeecCCCCCceeHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhcc
Q Heliorhodopsin  142 ILFGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYL-QYKGK  220 (255)
Q Consensus       142 ilfG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~l-Qyk~v  220 (255)
                      +.+|++.|... ....+|..|.+||++.+.-.-.+....-......+++....-..+.....+.+..+++.-.+ +  +.
T Consensus       113 i~~g~~g~~~~-~~~~~w~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~--~g  189 (225)
T 3T45_C          113 IGTGLVGALTK-VYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGS--EG  189 (225)
T ss_dssp             HHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTSCHHHHHHHHHHHHHHHHHHTHHHHHHHHST--TT
T ss_pred             HHHHHHHHHcc-cchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHCc--CC


Q ss_pred             cchhhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  221 GKWSNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       221 g~W~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      +.--|-...|-.|-++.+++|...+..+...
T Consensus       190 ~~~i~~~~~~i~y~ilDv~~K~~f~~~ll~~  220 (225)
T 3T45_C          190 AGIVPLNIETLLFMVLDVSTKVGFGLILLRS  220 (225)
T ss_dssp             TCCSCHHHHHHHHHHHHHCCCCCHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhhHHHHHHHHHHH


No 31
>1M0K_A BACTERIORHODOPSIN; ION PUMP, MEMBRANE PROTEIN, RETINAL; HET: LI1, SQU, RET; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1; Related PDB entries: 4XXJ_B 4XXJ_C 4XXJ_A 4HYX_B 2ZZL_A 2ZFE_A 1M0L_A 1M0M_A 4HWL_A 4HWL_B 4HYX_A 3VHZ_A 3VI0_A 5VN9_B 5VN7_B 5VN7_A 5VN9_A 4FPD_A 1PXS_A 1PXS_B 3HAS_A 2I21_A 3HAQ_A 3HAO_A 3HAO_B 1Q5J_B 1VJM_A 1Q5I_A 1S8J_A 2I20_A 3HAR_A 3COC_B 3COC_A 1Q5J_A 1Q5I_B 1S8L_A 1P8H_A 5BR2_A 5B35_A 1R2N_A 5B34_A 1UCQ_A 5BR5_A 1JV7_A 1C8R_A 1P8I_A 1PY6_B 1PY6_A 2NTU_A 2NTW_A 1TN5_A 3UTY_A 3UTY_B 1JV6_A 1TN5_B 3UTW_A 2WJL_A 1PXR_B 1PXR_A 1TN0_B 3COD_B 3COD_A 3UTV_A 2I1X_A 1TN0_A 1O0A_A 2WJK_A 3UTX_B 3UTX_A 1MGY_A 4OV0_A 1R3P_. 1P8U_A 3HAN_A 3HAP_A 1QM8_A 1X0K_1 3MBV_A 5H2N_A 3NS0_A 4MD1_A 1DZE_A 5H2P_A 5H2M_A 1QHJ_A 3NSB_A 5H2H_A 5H2I_A 1IW9_A 5H2J_A 5A44_A 5H2L_A 4MD2_A 1IW6_A 5B6Z_A 5B6X_A 5A45_A 5B6V_A 5B6Y_A 1QKP_A 1QKO_A 1IXF_A 1AP9_A 1X0S_A 1FBB_A 5B6W_A 1X0I_1 5H2K_A 5H2O_A 1FBK_A 2BRD_A 1AT9_A 1BRX_A 1BM1_A 2AT9_A 1BRD_A 1CWQ_B 1CWQ_A 1BRR_B 1BRR_A 1BRR_C 1XJI_A 1R84_A 1KGB_A 1KG8_A 1KME_A 1KME_B 1KG9_A
Probab=97.31  E-value=0.00029  Score=64.40  Aligned_cols=180  Identities=10%  Similarity=0.084  Sum_probs=0.0  Template_Neff=7.800

Q ss_pred             HHHHHHHHHHHHHHHHHHcchhHHHHHHH--HHcCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   67 LAVALFLGLSALFHFIVSSGNFFKRYSAS--LMKNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMILF  144 (255)
Q Consensus        67 ~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~--L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~milf  144 (255)
                      ...++-..++++.++..+. -+-..+...  -.|-..+.|.+|+.++.++|+..++.+.|. +...+....+.+..|+.+
T Consensus        57 ~l~~~i~~va~~~Y~~ma~-g~g~~~~~~~~~~r~~~~~RYv~W~iTtPlll~~L~lla~~-~~~~i~~~v~~~~~mi~~  134 (262)
T 1M0K_A           57 AITTLVPAIAFTMYLSMLL-GYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDA-DQGTILALVGADGIMIGT  134 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TTTCEEEEETTEEEEECTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCceeeecCCCccceeHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhcccch
Q Heliorhodopsin  145 GWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYL-QYKGKGKW  223 (255)
Q Consensus       145 G~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~l-Qyk~vg~W  223 (255)
                      |++.+... .+..+|..|.+||++.+.-.-.+....-......+++.-..-..+.....+.+..+++.-.+ +  +...-
T Consensus       135 Gl~g~~~~-~~~~kw~~~~~s~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~--~g~~v  211 (262)
T 1M0K_A          135 GLVGALTK-VYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGS--EGAGI  211 (262)
T ss_dssp             HHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHST--TTTCC
T ss_pred             HHHHHHcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHCc--CCCCC


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHhc
Q Heliorhodopsin  224 SNYLRGERAYIVLSLVAKSALAWQIFSG  251 (255)
Q Consensus       224 ~dYl~GE~~YIvLSlvaKs~LAW~vf~g  251 (255)
                      -+-...+-.|-++.+++|...+..+...
T Consensus       212 i~~~~e~i~y~ilDv~~K~~f~~~ll~~  239 (262)
T 1M0K_A          212 VPLNIETLLFMVLDVSAKVGFGLILLRS  239 (262)
T ss_dssp             SCHHHHHHHHHHHHHCCCCCHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH


No 32
>4FBZ_A deltarhodopsin; 7 transmembrane helices, light-driven proton; HET: SO4, SQL, BNG, L2P, RET, 22B; 2.7A {Haloterrigena thermotolerans}
Probab=97.20  E-value=0.00046  Score=62.04  Aligned_cols=183  Identities=11%  Similarity=0.116  Sum_probs=0.0  Template_Neff=8.100

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHH-cCCCchHHHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVSSGNFFKRYSASLM-KNQNIFRWVEYSLSSSVMIVLIAQICGIADIVALLAIFGVNASMIL  143 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~-~g~N~~RW~EYsiSsSiMivlIa~l~Gv~Di~aLv~if~lna~mil  143 (255)
                      .....++=..++++.|+..+.-..+.....+-+ |-.++.|.+|+.++.++|+..++.+.|. |........+.+..|+.
T Consensus        41 ~~~~~~~i~~va~~~Y~~ma~~~g~~~~~~~~~~r~~~~~RY~~W~~ttPlll~~l~~l~~~-~~~~~~~~v~~~~~mi~  119 (241)
T 4FBZ_A           41 FYIITTFITTIAAAMYFAMATGFGVTEVVVGDEALTIYWARYADWLFTTPLLLLDLGLLAGA-NRNTIATLIGLDVFMIG  119 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTCEEEECSSCEEEECTHHHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCceEEecCCcceeeeHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q Heliorhodopsin  144 FGWLQEKYTQPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFALVQYLQYKGKGKW  223 (255)
Q Consensus       144 fG~l~E~~n~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fainq~lQyk~vg~W  223 (255)
                      +|++.|... .....|..|.+|+...+.-...+.--.-......+++.-...-.+.....+.+..+++.-.+-......-
T Consensus       120 ~g~~g~~~~-~~~~~w~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~G~~~~  198 (241)
T 4FBZ_A          120 TGMIAAFAA-TPGTRIAWWGISTGALLALLYVLVGTLSKDARGQSPEVASLFGRLRNLVIVLWLLYPVVWILGTEGTFGI  198 (241)
T ss_dssp             HHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGSSCC
T ss_pred             HHHHHHHcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin  224 SNYLRGERAYIVLSLVAKSALAWQIF  249 (255)
Q Consensus       224 ~dYl~GE~~YIvLSlvaKs~LAW~vf  249 (255)
                      -|-...|-.|-++.+++|...+..+.
T Consensus       199 i~~~~e~i~y~i~D~~~K~~f~~~l~  224 (241)
T 4FBZ_A          199 LPLYWETAAFMVLDLSAKVGFGVVLL  224 (241)
T ss_dssp             SCHHHHHHHHHHHHHCCCCCHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH


No 33
>3DL8_G SecA, SecG, SecY, SecE; RecA-type ATPase membrane protein translocation; 7.5A {Bacillus subtilis}; Related PDB entries: 3DL8_H
Probab=51.75  E-value=3e+02  Score=27.34  Aligned_cols=174  Identities=13%  Similarity=0.174  Sum_probs=0.0  Template_Neff=7.700

Q ss_pred             EEeeccHHHHHHHHHHHHHHHHHHHHcchhHH-HHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhH----------
Q Heliorhodopsin   59 VILETPVGLAVALFLGLSALFHFIVSSGNFFK-RYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIAD----------  127 (255)
Q Consensus        59 ~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~-~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~D----------  127 (255)
                      ++++..+++.+..-..+--+.+.....=.+.+ .=+++=+|-.+..|+..-.++.---+.....+.|-..          
T Consensus        71 Sl~~LGI~P~ItAsIi~Qll~~~~p~l~~l~k~~g~~gr~k~~~~~r~ltl~la~iqa~~~~~~~~~~~~~~~~~~~~~~  150 (429)
T 3DL8_G           71 TVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENP  150 (429)
T ss_pred             hHHHhchHHHHHHHHHHHHHHHHhhhHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccCC


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHH
Q Heliorhodopsin  128 --IVALLAIFGVNASMILFGWLQEKYTQPK-DGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFL  204 (255)
Q Consensus       128 --i~aLv~if~lna~milfG~l~E~~n~~~-~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv  204 (255)
                        ...++.+..+++..++.=|+.|+.++.| ..+-..+++.-+..-.||-..-..-....  ++..........++.+.+
T Consensus       151 ~~~~~~~~~l~l~~Gs~il~wL~e~it~~GiGnG~SliI~~~I~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~  228 (429)
T 3DL8_G          151 GISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKT--GDIGPLTLLLIIALIIAI  228 (429)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhchHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHH-----HHHhcccchhhHhHHHHHHH
Q Heliorhodopsin  205 FFNSFALVQY-----LQYKGKGKWSNYLRGERAYI  234 (255)
Q Consensus       205 ~Fn~Fainq~-----lQyk~vg~W~dYl~GE~~YI  234 (255)
                      ++.+--+.+.     +||.+...-|+...|++.|+
T Consensus       229 ~~~~v~~~~~~~~IPi~~~~~~~~~~~~~~~~~~~  263 (429)
T 3DL8_G          229 IVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTYL  263 (429)
T ss_pred             HHHHHHHHhhcccccccCCCccccccccCCCCccc


No 34
>2ZQP_Y Preprotein translocase SecY subunit, Preprotein; TRANSLOCON, SEC, PROTEIN-CONDUCTING-CHANNEL, Membrane, Protein; 6.0A {Thermus thermophilus}; Related PDB entries: 5AWW_Y 5CH4_Y 2ZJS_Y
Probab=42.08  E-value=5.2e+02  Score=25.81  Aligned_cols=152  Identities=13%  Similarity=0.040  Sum_probs=0.0  Template_Neff=7.500

Q ss_pred             EEeeccHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchhH-----------
Q Heliorhodopsin   59 VILETPVGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIAD-----------  127 (255)
Q Consensus        59 ~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~D-----------  127 (255)
                      ++++..+++.+..-..+--+.+.....-.+.+.=+++=+|-.+..|+..-.++.---...+..+.|-..           
T Consensus        71 si~~LGI~P~itAsIi~Qll~~~~P~l~~l~~~~~~gr~k~~~~~r~ltl~la~iqa~~~~~~~~~~~~~~~~~~~~~~~  150 (434)
T 2ZQP_Y           71 SIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPG  150 (434)
T ss_dssp             CTTSSTTCTTTTTSSHHHHTTTSSTTHHHHHHSSGGGSHHHHHHHHHHHHHHHHHSHHHHCCCCCHHHCSSSBCSSCCTT
T ss_pred             cHHHhccHHHHHHHHHHHHHHHHhhHhHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccCCCCch


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHH
Q Heliorhodopsin  128 -IVALLAIFGVNASMILFGWLQEKYTQPK-DGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLF  205 (255)
Q Consensus       128 -i~aLv~if~lna~milfG~l~E~~n~~~-~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~  205 (255)
                       ...+..++.+++..++.=|+.|+.++.| ..+-..+++.-+..-.||-..-..-....     ..|.. ..++....++
T Consensus       151 ~~~~~~~~~~l~~Gs~~~~wl~e~it~~GiGnG~SliI~~~I~~~l~~~l~~~~~~~~~-----~~~~~-~~~l~~~~~~  224 (434)
T 2ZQP_Y          151 PFFWFVVVVTQVAGIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRT-----GEVNL-VAFLFFLAFI  224 (434)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHSSSCHHHHHHHHHHHTTSSHHHHHHHHHHHH-----TSSCT-THHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHhhhhcc-----CCCcH-HHHHHHHHHH


Q ss_pred             HHHHHHHHHHH
Q Heliorhodopsin  206 FNSFALVQYLQ  216 (255)
Q Consensus       206 Fn~Fainq~lQ  216 (255)
                      ..++.+.-++|
T Consensus       225 l~~~~~vv~~q  235 (434)
T 2ZQP_Y          225 VLAFAGMAAVQ  235 (434)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH


No 35
>5AWW_Y Protein translocase subunit SecY, Protein; translocon, membrane protein, PROTEIN TRANSPORT-IMMUNE; HET: OLC; 2.724A {Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)}; Related PDB entries: 5CH4_Y 2ZQP_Y 2ZJS_Y
Probab=37.24  E-value=6.4e+02  Score=25.36  Aligned_cols=152  Identities=13%  Similarity=0.039  Sum_probs=0.0  Template_Neff=7.300

Q ss_pred             EEeeccHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchh------------
Q Heliorhodopsin   59 VILETPVGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIA------------  126 (255)
Q Consensus        59 ~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~------------  126 (255)
                      +++...+++.+..-..+--+.+.....-.+.+.=+++=+|-.+..||..-.++.---+..+..+.|..            
T Consensus        71 sl~~LGI~P~ItAsIi~Qll~~~~P~l~~l~~~~~~gr~k~~~~tr~ltl~la~iqa~~~~~~~~~~~~~~~~~~~~~~~  150 (444)
T 5AWW_Y           71 SIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPG  150 (444)
T ss_dssp             BTTTTTTHHHHHHHHHHHHHHHHCHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHHCCCCCSHHHHTTBCTTCCSS
T ss_pred             cHHHhccHHHHHHHHHHHHHHHHhhHhHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccCCCCch


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHH
Q Heliorhodopsin  127 DIVALLAIFGVNASMILFGWLQEKYTQPK-DGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLF  205 (255)
Q Consensus       127 Di~aLv~if~lna~milfG~l~E~~n~~~-~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~  205 (255)
                      ....+..++.+++..++.=|+.|+.++.| ..+-..+++.-+..-.||-..-..-....     ..|.. ..+++...++
T Consensus       151 ~~~~~~~~~~l~~Gs~~~~wL~e~it~~GiGnG~SliI~~~I~~~l~~~l~~~~~~~~~-----~~~~~-~~ll~~i~~~  224 (444)
T 5AWW_Y          151 PFFWFVVVVTQVAGIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRT-----GEVNL-VAFLFFLAFI  224 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHTTHHHHHHHHHHHHHH-----TSSCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHhHHhHHHHHHHHhhhccC-----CCCcH-HHHHHHHHHH


Q ss_pred             HHHHHHHHHHH
Q Heliorhodopsin  206 FNSFALVQYLQ  216 (255)
Q Consensus       206 Fn~Fainq~lQ  216 (255)
                      ..++.+.-++|
T Consensus       225 l~~~~~vv~~q  235 (444)
T 5AWW_Y          225 VLAFAGMAAVQ  235 (444)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH


No 36
>5XJY_A ATP-binding cassette sub-family A member; membrane transporter, TRANSPORT PROTEIN; HET: NAG, BMA;{Homo sapiens}
Probab=25.11  E-value=2e+03  Score=27.25  Aligned_cols=217  Identities=12%  Similarity=-0.003  Sum_probs=0.0  Template_Neff=7.100

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc------eeeeccCCCCCCCCCCCeEEeeccHHHHHHHHHH
Q Heliorhodopsin    1 MAKPTVKEIKSLQNFNRIAGVFHLLQMLAVLALANDFALP------MTGTYLNGPPGTTFSAPVVILETPVGLAVALFLG   74 (255)
Q Consensus         1 ~~~~~~~~~~~Lr~~N~iag~lhliq~i~~l~l~~~~~~p------v~~~~~~~~~g~~~~~~~~l~~~~ig~~va~Fl~   74 (255)
                      +.++..++--.+-+=|..--...+.|.+++.++......|      ....+...+.......+....+.+.-..+..|..
T Consensus      1602 ~~~~~~~r~~~~~~rn~~~~~~r~~~~iv~~liL~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~G~lf~~~ 1681 (2305)
T 5XJY_A         1602 MTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQKGENPSHYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSIC 1681 (2305)
T ss_dssp             HTTSCCSSCEEEEECSSSTTHHHHHHHHHHHHHHHHHCCSCSCSSSCCBCCBCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccccchHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCCCCCcceEEEEeeCCCCCCcchHHHHHHHHhHHHHHHHHH


Q ss_pred             HHHHHHHHHHcchhHHHHHHHHHcCCCch----HHHHHHHhHHHHHH-------------HHHHHhchhH-----HHHHH
Q Heliorhodopsin   75 LSALFHFIVSSGNFFKRYSASLMKNQNIF----RWVEYSLSSSVMIV-------------LIAQICGIAD-----IVALL  132 (255)
Q Consensus        75 lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~----RW~EYsiSsSiMiv-------------lIa~l~Gv~D-----i~aLv  132 (255)
                      +--.+-.....|....+.+...|.....+    ||.-|.+|..+.=+             +..+.+|...     ....+
T Consensus      1682 l~l~f~~~~~~~~~~~~rev~~Ker~~~~~~Gy~~~aY~la~~l~ei~p~~i~~~~v~~~i~Y~~~g~~~~~~~f~~~~l 1761 (2305)
T 5XJY_A         1682 VIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL 1761 (2305)
T ss_dssp             HHHHTTTSHHHHHHHHHHHHTTTHHHHHHHSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSTTTSHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q Heliorhodopsin  133 AIFGVNASMILFGWLQEKYT-QPKDGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSFAL  211 (255)
Q Consensus       133 ~if~lna~milfG~l~E~~n-~~~~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~Fai  211 (255)
                      .++..+.++.-|+++.-..- .+....-.....-.+.++...++..+.-+...... +..|.+..++.-+--.+....++
T Consensus      1762 ll~l~~l~~~~~~~~ls~~~~~~~~A~~~~~~~~l~~~lf~Gv~~~vl~~~~~f~i-~~ip~~~~w~y~isP~~~l~~gl 1840 (2305)
T 5XJY_A         1762 LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTDNKL-NNINDILKSVFLIFPHFCLGRGL 1840 (2305)
T ss_dssp             HHHHHHHHHHHHTSTTSSSCCSTTCHHHHHHHHHHHHHHHHHHHTCCCCC-------HHHHHHSSHHHHSSSCCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh-hcccHHHHHHHHhChHHHHHHHH


Q ss_pred             HHHHHHh
Q Heliorhodopsin  212 VQYLQYK  218 (255)
Q Consensus       212 nq~lQyk  218 (255)
                      ....|+.
T Consensus      1841 ~~l~~~~ 1847 (2305)
T 5XJY_A         1841 IDMVKNQ 1847 (2305)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhH


No 37
>5GAE_g 50S ribosomal protein L2, 50S; ribosome, translocon; HET: MG; 3.33A {Escherichia coli}; Related PDB entries: 5MG3_Y 5ABB_A 3J45_y 3J46_y 4V6M_BA 3J01_A 5NCO_g 2AKH_B 2AKH_Y 2AKI_Y 2AKI_B
Probab=22.01  E-value=1.2e+03  Score=23.44  Aligned_cols=158  Identities=15%  Similarity=0.114  Sum_probs=0.0  Template_Neff=7.400

Q ss_pred             EEeeccHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHcCCCchHHHHHHHhHHHHHHHHHHHhchh----------HH
Q Heliorhodopsin   59 VILETPVGLAVALFLGLSALFHFIVSSGNFFKRYSASLMKNQNIFRWVEYSLSSSVMIVLIAQICGIA----------DI  128 (255)
Q Consensus        59 ~l~~~~ig~~va~Fl~lsAlaH~l~a~p~~~~~Y~~~L~~g~N~~RW~EYsiSsSiMivlIa~l~Gv~----------Di  128 (255)
                      ++++..+++.+..=..+--+.+.....-.+.+.=+++=+|-.+..|+..-.++.---+..+..+.|..          -.
T Consensus        76 Si~~LGI~P~ItAsIi~Qll~~~~P~l~~l~~~~~~gr~k~~~~tr~ltl~la~iqa~~~~~~l~~~~~~~~~~~~~~~~  155 (443)
T 5GAE_g           76 SIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFA  155 (443)
T ss_dssp             CSCSSTTHHHHHHHHHHHHHHHHCHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC------------CH
T ss_pred             cHHHhchHHHHHHHHHHHHHHhhcchhHhhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccChhHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHH
Q Heliorhodopsin  129 VALLAIFGVNASMILFGWLQEKYTQPK--DGDLLPFWFGCIAGIVPWIGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFF  206 (255)
Q Consensus       129 ~aLv~if~lna~milfG~l~E~~n~~~--~~~~~pf~~G~iaGivPWi~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~F  206 (255)
                      ..++.+..+++..++.=|+.|+.++.|  ++.+.--..|.+..+-+-+.-.+.....+     ..|.....+++..+++.
T Consensus       156 ~~~~~~l~l~~Gs~il~wL~e~It~~GiGnG~SliI~~~I~~~l~~~l~~~~~~~~~~-----~~~~~~~l~~~i~~~~~  230 (443)
T 5GAE_g          156 FYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQG-----DLHFLVLLLVAVLVFAV  230 (443)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTTTSSSCHHHHHHHHHHHTTCHHHHHHHHHTTTTT-----SSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHhcCccHHHHHHHHHhhcC-----cchHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHhccc
Q Heliorhodopsin  207 NSFALVQYLQYKGKG  221 (255)
Q Consensus       207 n~Fainq~lQyk~vg  221 (255)
                      ..+.+-.---.+|..
T Consensus       231 ~~~~v~l~~~~~~IP  245 (443)
T 5GAE_g          231 TFFVVFVERGQRRIV  245 (443)
T ss_dssp             HHHHHHHHHSCEEEE
T ss_pred             HHHHHHHHhccceee


No 38
>1RH5_A Preprotein translocase secY subunit/ Preprotein; Protein translocation, SecY, Membrane Protein; 3.2A {Methanocaldococcus jannaschii} SCOP: f.41.1.1; Related PDB entries: 3BO0_A 3KCR_A 4V7I_AA 3BO1_A 1RHZ_A 1VVK_X 4V4N_AX 2YXQ_A 3DKN_A 2YXR_A
Probab=20.89  E-value=1.3e+03  Score=23.29  Aligned_cols=142  Identities=9%  Similarity=0.075  Sum_probs=0.0  Template_Neff=7.200

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--cchhHHHHHHHHHcCCCchHHHHHHHhH--HHHHHHHHHHhchhHHHHHHHHHHHHHH
Q Heliorhodopsin   65 VGLAVALFLGLSALFHFIVS--SGNFFKRYSASLMKNQNIFRWVEYSLSS--SVMIVLIAQICGIADIVALLAIFGVNAS  140 (255)
Q Consensus        65 ig~~va~Fl~lsAlaH~l~a--~p~~~~~Y~~~L~~g~N~~RW~EYsiSs--SiMivlIa~l~Gv~Di~aLv~if~lna~  140 (255)
                      ++..+.=..--|-+.+++..  .|....+-+++=+|=.++-|+..-.++.  |+-++......+..-...++.+..+++.
T Consensus        71 ~~LGI~P~itasii~Qll~~~~~~~l~~~~~~~r~~~~~~~r~l~l~la~iqs~~~v~~~~~~~~~~~~~~~~v~~l~~G  150 (436)
T 1RH5_A           71 ITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFG  150 (436)
T ss_dssp             TTTTTHHHHHHHHHHCCCCCCCCSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHH--------HHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHH
Q Heliorhodopsin  141 MILFGWLQEKYTQPK-DGDLLPFWFGCIAGIVPW--------IGLLIYVIAPGSTSDVAVPGFVYGIIISLFLFFNSF  209 (255)
Q Consensus       141 milfG~l~E~~n~~~-~~~~~pf~~G~iaGivPW--------i~i~~~~~~~~~~~~~~~P~fV~~I~~~~fv~Fn~F  209 (255)
                      .++.=|+.|+.++.| ..+-..+++--+..-+||        +.-..+....   .....|.....+....++++..+
T Consensus       151 s~i~~wL~e~i~~~GiG~G~sliI~~~I~~~i~~~~~~~~~~l~~~~~~~~~---~~~~l~~l~~li~~l~i~~~vv~  225 (436)
T 1RH5_A          151 SIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQ---GVPNIEYIAPIIGTIIVFLMVVY  225 (436)
T ss_dssp             HHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTT---TCCCGGGTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHhhhhhHhhCcchHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH


