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["7",43906015,43906015,"MMRF_2498_1_BM","downstream_gene_variant","URGCP-MRPS24",".","T","C",".",".",".",".",".",".",3,"true","true","true","0","0","0.0",27,0,0,27,22,13,0.371,35,".",".",".","MODIFIER","ENSG00000270617","ENST00000603700","protein_coding","c.*2570A>G",".",0]
["7",63033247,63033247,"MMRF_2498_1_BM","non_coding_exon_variant","TNRC18P2","rs10275777","A","G",".",".",".",".","true",".",2,"true",".","true","0","0","0.0",33,0,0,33,32,8,0.2,40,".",".",".","MODIFIER","ENSG00000223566","ENST00000417666","unprocessed_pseudogene","n.1627T>C",".",0]
["7",91624899,91624899,"MMRF_2498_1_BM","intron_variant","AKAP9","rs771403705","GTTTC","G",".",".",".","true","true","true",2,"true",".","true","0","0","0.0",113,0,0,113,110,37,0.251,152,".",".",".","MODIFIER","ENSG00000127914","ENST00000359028","protein_coding","c.769-17_769-14delTTTC",".",0]
["7",107822376,107822376,"MMRF_2498_1_BM","missense_variant","NRCAM","rs553748314","T","C","true",".",".","true","true",".",3,"true","true","true","0","0","0.0",188,0,0,188,158,63,0.285,221,"1.294301","0.995","Fibronectin__type_III__3_,Immunoglobulin-like_fold__1_","MODERATE","ENSG00000091129","ENST00000379028","protein_coding","c.2536A>G","p.Met846Val",1]

{"sheet":"2B_Mutations_dictionary","index":1,"n_rows":41,"n_cols":2,"rows_kept":41}
["FIELD","DESCRIPTION"]
["chr","Chromosome_on_which_variant_exists"]
["start","Variant_start_position"]
["end","Variant_end_position"]
["sample","Sample_ID"]
["EFFECT","Type_of_variant"]
["GENE","Gene_name"]
["ID","dbSNP_identifier_for_mutations_in_dbSNP_database"]
["REF","Reference_base_at_this_genomic_position"]
["ALT","All_observed_alternate_bases"]
["1000G","Observed_alternate_exists_in_1000_genomes_study_if_true"]
["COSMIC_C","Observed_alternate_exists_in_COSMIC_coding_variant_list_if_true"]
["COSMIC_NC","Observed_alternate_exsits_in_COSMIC_noncoding_variant_list_if_true"]
["EXAC","Observed_alternate_exists_in_EXAC_if_true"]
["DB","Observed_alternate_exists_in_dbSNP_database_if_true"]
["NHLBI","Observed_alternate_exists_in_NHLBI_database_if_true"]
["CALLER_COUNT","Number_of_somatic_callers_that_identified_the_observed_alternate"]
["SEURAT","Alternate_called_by_Seurat_somatic_caller_if_true"]
["MUTECT","Alternate_called_by_Mutect_somatic_caller_if_true"]
["STRELKA","Alternate_called_by_Strelka_somatic_caller_if_true"]
["RNA_REF_COUNT","Number_of_reference_bases_observed_in_paired_RNA_sequencing_results"]
["RNA_ALT_COUNT","Number_of_alternate_bases_observed_in_paired_RNA_sequencing_results_(base_must_match_that_observed_by_the_DNA_caller)"]
["RNA_ALT_FREQ","Frequency_of_the_alternate_base_in_the_paired_RNA_sequencing_results"]
["NORMAL_REF_AD","Number_of_reference_bases_observed_in_the_normal_sample"]
["NORMAL_ALT_AD","Number_of_alternate_bases_observed_in_the_normal_sample"]
["NORMAL_ALT_FREQ","Frequency_of_alternate_bases_in_the_normal_sample"]
["NORMAL_DP","Total_depth_of_coverage_at_this_position_in_the_normal_sample"]
["TUMOR_REF_AD","Number_of_reference_bases_observed_in_the_tumor_sample"]
["TUMOR_ALT_AD","Number_of_alternate_bases_observed_in_the_tumor_sample"]
["TUMOR_ALT_FREQ","Frequency_of_alternate_bases_in_the_tumor_sample"]
["TUMOR_DP","Total_depth_of_coverage_at_this_position_in_the_tumor_sample"]
["dbNSFP_CADD_raw","CADD_raw_score_(See_https://sites.google.com/site/jpopgen/dbNSFP)"]
["dbNSFP_MutationTaster_score","Mutation_taster_score_(See_https://sites.google.com/site/jpopgen/dbNSFP)"]
["dbNSFP_Interpro_domain","Known_Interpro_domains_overlaping_mutation_postion_(See_https://sites.google.com/site/jpopgen/dbNSFP)"]
["IMPACT","Impact_of_observed_mutation_(See_http://snpeff.sourceforge.net/)"]
["GENEID","ENSG_ID_of_observed_mutation_(See_http://snpeff.sourceforge.net/)"]
["FEATUREID","The_Ensembl_ID_of_the_annotated_feature_(See_http://snpeff.sourceforge.net/)"]
["BIOTYPE","Gene_biotype_(See_http://snpeff.sourceforge.net/)"]
["HGVS_C","HGVS_CDS_annotation_describing_mutation_(See_http://snpeff.sourceforge.net/)"]
["HGVS_P","HGVS_Protein_annotation_describing_mutation_(See_http://snpeff.sourceforge.net/)"]
["Mutsig_Flag","Variant_used_in_Mutsig_analysis_0=No_1=Yes"]