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{"sheet":"3B_Delly_dictionary","index":1,"n_rows":53,"n_cols":2,"rows_kept":53}
["FIELD","DESCRIPTION"]
["Patient_ID","Patient_identifier"]
["Specimen_ID","Sample_identifer"]
["SVTYPE","Structural_variant_type"]
["CHROM","Chromosome_for_starting_position"]
["POS","Start_position_of_the_structural_variant"]
["ID","Delly_structural_variant_ID"]
["REF","Reference_base_or_sequence"]
["CHR2","Chromosome_for_ending_position_(for_translocation_calls)"]
["ENDPOSSV","End_position_of_the_structural_variant"]
["MAPQ","Median_mapping_quality_of_paired-ends"]
["PE","Paired-end_support_of_the_structural_variant"]
["SR","Split-read_support"]
["CE","Consensus_sequence_entropy"]
["CT","Paired-end_signature_induced_connection_type"]
["PRECISE","True_if_call_is_precise"]
["HOMLEN","Predicted_microhomology_length_using_a_max_edit_distance_of_2"]
["RDRATIO","Read-depth_ratio_of_tumor_vs_normal"]
["LENSV","Length_of_the_SV_for_DEL_DUP_INS_and_INV_(TRA_will_have_length_of_-1)"]
["RGENUPS_ENSG","Ensembl_ID_of_the_gene_upstream_of_the_left_(5')_breakpoint"]
["RGENUPS_HUGO","HUGO_ID_of_the_gene_upstream_of_the_left_(5')_breakpoint"]
["RGENUPS_Distance","Distance_(bp)_of_the_gene_upstream_of_the_left_(5')_breakpoint"]
["RGENUPS_Strand","Strand_of_the_gene_upstream_of_the_left_(5')_breakpoint"]
["RGENISEC_ENSG","Ensembl_ID_of_the_gene_intersecting_the_left_(5')_breakpoint"]
["RGENISEC_HUGO","HUGO_ID_of_the_gene_intersecting_the_left_(5')_breakpoint"]
["RGENISEC_Distance","Distance_(bp)_of_the_intersecting_gene_to_the_left_(5')_breakpoint"]
["RGENISEC_Strand","Strand_of_the_gene_intersecting_the_left_(5')_breakpoint"]
["RGENDNS_ENSG","Ensembl_ID_of_the_gene_downstream_of_the_left_(5')_breakpoint"]
["RGENDNS_HUGO","HUGO_ID_of_the_gene_downstream_of_the_left_(5')_breakpoint"]
["RGENDNS_Distance","Distance_(bp)_of_the_gene_downstream_of_the_left_(5')_breakpoint"]
["RGENDNS_Strand","Gene_Strand_of_the_gene_downstream_of_the_left_(5')_breakpoint"]
["LGENUPS_ENSG","Ensembl_ID_of_the_gene_upstream_of_the_right_(3')_breakpoint"]
["LGENUPS_HUGO","HUGO_ID_of_the_gene_upstream_of_the_right_(3')_breakpoint"]
["LGENUPS_Distance","Distance_(bp)_of_the_gene_upstream_of_the_right_(3')_breakpoint"]
["LGENUPS_Strand","Strand_of_the_gene_upstream_of_the_right_(3')_breakpoint"]
["LGENISEC_ENSG","Ensembl_ID_of_the_gene_intersecting_the_right_(3')_breakpoint"]
["LGENISEC_HUGO","HUGO_ID_of_the_gene_intersecting_the_right_(3')_breakpoint"]
["LGENISEC_Distance","Distance_(bp)_of_the_intersecting_gene_to_the_right_(3')_breakpoint"]
["LGENISEC_Strand","Strand_of_the_gene_intersecting_the_right_(3')_breakpoint"]
["LGENDNS_ENSG","Ensembl_ID_of_the_gene_downstream_of_the_right_(3')_breakpoint"]
["LGENDNS_HUGO","HUGO_ID_of_the_gene_downstream_of_the_right_(3')_breakpoint"]
["LGENDNS_Distance","Distance_in_bp_of_the_gene_downstream_of_the_right_(3')_breakpoint"]
["LGENDNS_Strand","Strand_of_the_gene_downstream_of_the_right_(3')_breakpoint"]
["NORMAL_RC","Raw_high-quality_read_counts_for_the_SV"]
["TUMOR_RC","Raw_high-quality_read_counts_for_the_SV"]
["NORMAL_DR","High-quality_reference_pairs"]
["TUMOR_DR","High-quality_reference_pairs"]
["NORMAL_DV","High-quality_variant_pairs"]
["TUMOR_DV","High-quality_variant_pairs"]
["NORMAL_RR","High-quality_reference_junction_reads"]
["TUMOR_RR","High-quality_reference_junction_reads"]
["NORMAL_RV","High-quality_variant_junction_reads"]
["TUMOR_RV","High-quality_variant_junction_reads"]