QUAST

[{"date":"10 February 2020, Monday, 16:10:03","assembliesNames":["megahit-103-df","megahit-113-df","megahit-113-ml","megahit-113-ms","megahit-129-df","metaSPAdes"],"referenceName":"combined_reference","order":[0,1,2,3,4,5],"report":[["Genome statistics",[{"metricName":"Genome fraction (%)","quality":"More is better","values":["23.507","26.164","26.039","26.292","26.691","23.262"],"isMain":true},{"metricName":"Duplication ratio","quality":"Less is better","values":["1.023","1.037","1.046","1.050","1.034","1.017"],"isMain":true},{"metricName":"Largest alignment","quality":"More is better","values":[354703,904953,859640,753008,787657,1034619],"isMain":true},{"metricName":"Total aligned length","quality":"More is better","values":[436725459,492514960,493969107,500306789,500856984,429280747],"isMain":true},{"metricName":"NA50","quality":"More is better","values":[4357,7357,3708,3767,7566,11658],"isMain":false},{"metricName":"NA75","quality":"More is better","values":[1126,1319,952,939,1289,1524],"isMain":false},{"metricName":"LA50","quality":"Less is better","values":[16688,9952,16415,16495,9768,5481],"isMain":false},{"metricName":"LA75","quality":"Less is better","values":[71505,55692,94073,95761,57261,36368],"isMain":false}]],["Reads mapping",[]],["Misassemblies",[{"metricName":"# misassemblies","quality":"Less is better","values":[5770,8685,5336,9381,8807,3488],"isMain":true},{"metricName":" # relocations","quality":"Less is better","values":[216,476,437,583,554,142],"isMain":false},{"metricName":" # translocations","quality":"Less is better","values":[913,1881,1715,2115,2147,1063],"isMain":false},{"metricName":" # inversions","quality":"Less is better","values":[174,422,265,313,361,4],"isMain":false},{"metricName":" # interspecies translocations","quality":"Less is better","values":[4467,5906,2919,6370,5745,2279],"isMain":false},{"metricName":"# misassembled contigs","quality":"Less is better","values":[5646,8219,4953,8675,8228,3247],"isMain":false},{"metricName":"Misassembled contigs length","quality":"Less is better","values":[10879967,43068359,34576388,56221107,50536067,25409676],"isMain":true},{"metricName":"# possibly misassembled contigs","quality":"Less is better","values":[30,87,72,122,94,16],"isMain":false},{"metricName":" # possible misassemblies","quality":"Less is better","values":[31,105,79,140,109,19],"isMain":false},{"metricName":"# local misassemblies","quality":"Less is better","values":[384,732,691,834,874,152],"isMain":false},{"metricName":"# scaffold gap ext. mis.","quality":"Less is better","values":[0,0,0,0,0,0],"isMain":false},{"metricName":"# scaffold gap loc. mis.","quality":"Less is better","values":[0,0,0,0,0,0],"isMain":false},{"metricName":"# unaligned mis. contigs","quality":"Less is better","values":[3,16,28,30,19,0],"isMain":false}]],["Unaligned",[{"metricName":"# fully unaligned contigs","quality":"Less is better","values":[185,407,562,620,397,48],"isMain":false},{"metricName":"Fully unaligned length","quality":"Less is better","values":[114573,251600,339109,384200,247781,31569],"isMain":false},{"metricName":"# partially unaligned contigs","quality":"Less is better","values":[30,88,76,124,95,16],"isMain":false},{"metricName":"Partially unaligned length","quality":"Less is better","values":[20997,62787,52777,97345,72561,11336],"isMain":false}]],["Mismatches",[{"metricName":"# mismatches","quality":"Less is better","values":[2321237,2765121,4208738,4529651,2845660,1719000],"isMain":false},{"metricName":"# indels","quality":"Less is better","values":[10227,19864,18616,22735,20925,10895],"isMain":false},{"metricName":"Indels length","quality":"Less is better","values":[32654,67153,61576,80051,89197,33417],"isMain":false},{"metricName":"# mismatches per 100 kbp","quality":"Less is better","values":["542.07","580.14","887.27","945.71","585.26","405.65"],"isMain":true},{"metricName":"# indels per 100 kbp","quality":"Less is better","values":["2.39","4.17","3.92","4.75","4.30","2.57"],"isMain":true},{"metricName":" # indels (<= 5 bp)","quality":"Less is better","values":[9532,18314,17293,21007,18836,10127],"isMain":false},{"metricName":" # indels (> 5 bp)","quality":"Less is better","values":[695,1550,1323,1728,2089,768],"isMain":false},{"metricName":"# N's","quality":"Less is better","values":[0,0,0,0,0,0],"isMain":false},{"metricName":"# N's per 100 kbp","quality":"Less is better","values":["0.00","0.00","0.00","0.00","0.00","0.00"],"isMain":true}]],["Statistics without reference",[{"metricName":"# contigs","quality":"Equal","values":[225585,220757,278807,282136,225167,174693],"isMain":true},{"metricName":"# contigs (>= 0 bp)","quality":"Equal","values":[906440,473755,644349,633018,466764,944240],"isMain":false},{"metricName":"# contigs (>= 1000 bp)","quality":"Equal","values":[83834,78193,87734,87026,78922,61277],"isMain":false},{"metricName":"# contigs (>= 5000 bp)","quality":"Equal","values":[14486,14377,11965,12154,14090,11228],"isMain":false},{"metricName":"# contigs (>= 10000 bp)","quality":"Equal","values":[6562,7268,6227,6367,7374,6183],"isMain":false},{"metricName":"# contigs (>= 25000 bp)","quality":"Equal","values":[1707,2571,2265,2391,2795,2553],"isMain":false},{"metricName":"# contigs (>= 50000 bp)","quality":"Equal","values":[471,1032,863,887,1107,1132],"isMain":false},{"metricName":"Largest contig","quality":"More is better","values":[354703,904953,859640,754056,788697,1034619],"isMain":true},{"metricName":"Total length","quality":"More is better","values":[438032656,494653238,496722592,503491159,503073431,430847014],"isMain":true},{"metricName":"Total length (>= 0 bp)","quality":"More is better","values":[656714148,592169014,635645417,637431469,596517067,649949394],"isMain":false},{"metricName":"Total length (>= 1000 bp)","quality":"More is better","values":[342669622,399682035,368806791,372764886,405211262,354794894],"isMain":true},{"metricName":"Total length (>= 5000 bp)","quality":"More is better","values":[209586919,278087012,232592249,238510195,283234943,261084168],"isMain":false},{"metricName":"Total length (>= 10000 bp)","quality":"More is better","values":[154362921,228640882,192818790,198110070,236255195,225930387],"isMain":true},{"metricName":"Total length (>= 25000 bp)","quality":"More is better","values":[80681912,156259069,131371435,136056759,165014101,169277911],"isMain":false},{"metricName":"Total length (>= 50000 bp)","quality":"More is better","values":[38821616,102990325,82724532,83865010,106551070,119684054],"isMain":true},{"metricName":"N50","quality":"More is better","values":[4406,7710,3836,3964,8087,12077],"isMain":false},{"metricName":"N75","quality":"More is better","values":[1145,1364,972,965,1333,1555],"isMain":false},{"metricName":"L50","quality":"Less is better","values":[16496,9405,15577,15138,9079,5227],"isMain":false},{"metricName":"L75","quality":"Less is better","values":[70586,53392,91524,91969,54548,35419],"isMain":false}]],["K-mer-based statistics",[]],["Predicted genes",[]],["Similarity statistics",[]],["Reference statistics",[{"metricName":"Reference length","quality":"Equal","values":[1821690894,1821690894,1821690894,1821690894,1821690894,1821690894],"isMain":false},{"metricName":"Reference 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better","values":[2,44,19,35,23,7],"isMain":false},{"metricName":" # indels (> 5 bp)","quality":"Less is better","values":[0,6,2,6,6,0],"isMain":false},{"metricName":"# N's","quality":"Less is better","values":[0,0,0,0,0,0],"isMain":false},{"metricName":"# N's per 100 kbp","quality":"Less is better","values":["0.00","0.00","0.00","0.00","0.00","0.00"],"isMain":true}]],["Statistics without reference",[{"metricName":"# contigs","quality":"Equal","values":[258,80,93,111,94,44],"isMain":true},{"metricName":"# contigs (>= 1000 bp)","quality":"Equal","values":[213,50,49,52,55,40],"isMain":false},{"metricName":"# contigs (>= 5000 bp)","quality":"Equal","values":[117,28,28,36,34,28],"isMain":false},{"metricName":"# contigs (>= 10000 bp)","quality":"Equal","values":[69,25,23,32,28,24],"isMain":false},{"metricName":"# contigs (>= 25000 bp)","quality":"Equal","values":[15,22,21,26,26,20],"isMain":false},{"metricName":"# contigs (>= 50000 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better","values":[50627,1653616,1591981,1631393,1674767,1560301],"isMain":true},{"metricName":"N50","quality":"More is better","values":[15812,108214,134168,93639,89891,97849],"isMain":false},{"metricName":"N75","quality":"More is better","values":[8371,54551,54532,43392,54477,64367],"isMain":false},{"metricName":"L50","quality":"Less is better","values":[41,7,6,8,9,7],"isMain":false},{"metricName":"L75","quality":"Less is better","values":[85,13,12,17,16,12],"isMain":false},{"metricName":"GC (%)","quality":"Equal","values":["41.17","41.32","41.25","41.52","41.33","41.12"],"isMain":false}]],["K-mer-based statistics",[]],["Predicted genes",[]],["Similarity statistics",[]],["Reference statistics",[{"metricName":"Reference length","quality":"Equal","values":[2011339,2011339,2011339,2011339,2011339,2011339],"isMain":false},{"metricName":"Reference fragments","quality":"Equal","values":[3,3,3,3,3,3],"isMain":false},{"metricName":"Reference GC 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better","values":[0,0,0,0,0,0],"isMain":false},{"metricName":"Total length (>= 50000 bp)","quality":"More is better","values":[0,0,0,0,0,0],"isMain":true},{"metricName":"N50","quality":"More is better","values":[588,580,577,590,591,600],"isMain":false},{"metricName":"N75","quality":"More is better","values":[531,533,532,534,533,537],"isMain":false},{"metricName":"L50","quality":"Less is better","values":[79,172,245,263,166,20],"isMain":false},{"metricName":"L75","quality":"Less is better","values":[130,286,398,434,277,33],"isMain":false},{"metricName":"GC (%)","quality":"Equal","values":["50.12","48.01","46.81","46.93","47.62","49.30"],"isMain":false}]],["K-mer-based statistics",[]],["Predicted genes",[]],["Similarity statistics",[]],["Reference statistics",[]]],"subreferences":[],"subreports":[],"minContig":500}]

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