{"text_format":"3","workbook":"xls","n_sheets":2,"sheets":["validated_genes","chr22"],"not_rendered":{"external_links":1,"defined_names":1},"read":"whole","date_system":"1900","formulas":"cached_only"}

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["Supplementary dataset S15"]
["ER+HER2- vs ER-HER2- comparison by DEXseq, TCGA dataset"]
["Validated genes analyzed with all genes on chr22, results for all exons of validated genes"]
["strand","LOC","DEXSeq","featureID","exonBaseMean","dispersion","stat","pvalue","padj","Gene","validated_by_q_pcr","call_BL"]
["plus","20:34680632-34680735","2036_p:2",2,8.94162757100656,7.1738250986828,0.538462652231829,0.463070552417848,1,"EPB41L1",null,0]
["plus","20:34700258-34700402","2036_p:3",3,43.1388609543576,7.1738250986828,0.199360999056807,0.655237124266555,1,"EPB41L1",null,1]
["plus","20:34709582-34709738","2036_p:5",5,42.4600311394144,7.1738250986828,1.37708309081791,0.240598628571109,1,"EPB41L1",null,0]
["plus","20:34710601-34710669","2036_p:6",6,31.5844000918176,7.1738250986828,7.25370938318883,0.00707547045784827,0.271512704011824,"EPB41L1",null,-1]
["plus","20:34713345-34713449","2036_p:7",7,20.4125715681388,7.1738250986828,1.9619770426616,0.161302035064389,1,"EPB41L1",null,-1]
["plus","20:34742662-34742818","2036_p:8",8,9.81527168103066,7.1738250986828,0.979020027873048,0.32244086529859,1,"EPB41L1",null,0]
["plus","20:34761686-34761876","2036_p:9",9,195.402481860748,7.1738250986828,2.37157334220319,0.123562463175183,1,"EPB41L1",null,-1]
["plus","20:34763473-34763637","2036_p:10",10,361.213180123251,7.1738250986828,0.373896514258377,0.540887957275208,1,"EPB41L1",null,0]
["plus","20:34765874-34765978","2036_p:11",11,312.188638367893,7.1738250986828,0.272517791294376,0.60164779555632,1,"EPB41L1",null,0]
["plus","20:34766552-34766594","2036_p:12",12,170.928259362198,7.1738250986828,0.280644768259663,0.596278923924714,1,"EPB41L1",null,0]
["plus","20:34770194-34770269","2036_p:13",13,267.408691322344,7.1738250986828,0.260225432048173,0.609965322276785,1,"EPB41L1",null,0]
["plus","20:34773039-34773257","2036_p:14",14,559.113154385247,7.1738250986828,0.223375065252185,0.636480233917369,1,"EPB41L1",null,0]
["plus","20:34775598-34775685","2036_p:15",15,318.117469472167,7.1738250986828,0.220886656014045,0.638365159900462,1,"EPB41L1",null,0]
["plus","20:34776269-34776421","2036_p:16",16,495.201431009872,7.1738250986828,0.230442433763528,0.631195964431131,1,"EPB41L1",null,0]
["plus","20:34778199-34778296","2036_p:17",17,339.904226452265,7.1738250986828,0.221019107280881,0.6382645045085,1,"EPB41L1",null,0]
["plus","20:34778544-34778719","2036_p:18",18,549.593641372122,7.1738250986828,0.14632401545532,0.702073307442292,1,"EPB41L1",null,0]
["plus","20:34782134-34782282","2036_p:19",19,545.831382447918,7.1738250986828,0.0720819158414088,0.788329286502349,1,"EPB41L1",null,0]
["plus","20:34783251-34783286","2036_p:20",20,6.30119030577958,7.1738250986828,2.97583573077281,0.0845164654998725,1,"EPB41L1",null,"NA"]
["plus","20:34785781-34785963","2036_p:21",21,524.238265248716,7.1738250986828,0.0883376931342355,0.766301167448973,1,"EPB41L1",null,0]
["plus","20:34788795-34788899","2036_p:22",22,1.20336783386209,5.52351474503848,6.8176560860993,0.00902609560265644,0.325957483940819,"EPB41L1",null,"NA"]
["plus","20:34793771-34795702","2036_p:23",23,38.739109616176,7.1738250986828,9.08413467130958,0.00257836452237178,0.127985626184965,"EPB41L1",null,1]
["plus","20:34796223-34796330","2036_p:24",24,3.33282247765726,7.1738250986828,9.73991043254136,0.00180309683297692,0.0967040209502336,"EPB41L1",null,0]
["plus","20:34797410-34797820","2036_p:25",25,265.129161049609,7.1738250986828,6.31223048186803,0.0119907895968981,0.405173717033018,"EPB41L1","validated",1]
["plus","20:34800194-34800298","2036_p:26",26,388.312658536851,7.1738250986828,0.00617266894914792,0.937377565748866,1,"EPB41L1",null,0]
["plus","20:34802279-34802362","2036_p:27",27,213.995375998635,7.1738250986828,0.121999950497411,0.726875423702585,1,"EPB41L1",null,0]
["plus","20:34806798-34806884","2036_p:28",28,430.974739214747,7.1738250986828,0.00966253276783391,0.921695521005431,1,"EPB41L1",null,0]
["plus","20:34807683-34807766","2036_p:29",29,486.875636683813,7.1738250986828,0.0546410804527113,0.815175717236201,1,"EPB41L1",null,0]
["plus","20:34809786-34809866","2036_p:30",30,524.745511335348,7.1738250986828,0.0290491056875908,0.86466570383049,1,"EPB41L1",null,0]
["plus","20:34810200-34810316","2036_p:31",31,643.098658350047,7.1738250986828,0.0157059653793112,0.900267493618532,1,"EPB41L1",null,0]
["plus","20:34817254-34820721","2036_p:32",32,6638.69249562036,7.1738250986828,0.121181482711108,0.727756592330994,1,"EPB41L1",null,0]
["minus","3:197615946-197616585","84223_m:1",1,1088.43065140907,7.1738250986828,3.82400166673324,0.0505234376566329,1,"IQCG","validated",1]
["minus","3:197618317-197618418","84223_m:2",2,242.839363783947,7.1738250986828,1.64025939761632,0.20028988146404,1,"IQCG","validated",1]
["minus","3:197619499-197619630","84223_m:3",3,321.181555465977,7.1738250986828,1.44194729971787,0.229824484815508,1,"IQCG","validated",1]
["minus","3:197639546-197639620","84223_m:4",4,448.497359723399,7.1738250986828,7.34103461635823,0.00673980374438953,0.26650783280781,"IQCG","validated",1]
["minus","3:197640593-197640913","84223_m:5",5,239.636421051231,7.1738250986828,13.4550965862327,0.000244341515741275,0.0190016252074798,"IQCG",null,0]
["minus","3:197652895-197652976","84223_m:6",6,121.467718235234,7.1738250986828,12.9617146582641,0.000317925869650486,0.0239264856095027,"IQCG",null,0]
["minus","3:197659045-197659173","84223_m:7",7,167.908533186165,7.1738250986828,13.7030111133172,0.000214110921387816,0.0178400278427776,"IQCG",null,0]
["minus","3:197665419-197665903","84223_m:8",8,255.579799075011,7.1738250986828,14.9137051983671,0.000112542404315685,0.010716793031367,"IQCG",null,0]
["minus","3:197670649-197670922","84223_m:9",9,250.028392415146,7.1738250986828,14.1227924300329,0.000171256084200094,0.0152319292149163,"IQCG",null,0]
["minus","3:197672491-197672557","84223_m:10",10,52.8809579700227,7.1738250986828,14.0786771789826,0.000175320072753479,0.0152319292149163,"IQCG",null,0]
["minus","3:197676710-197676796","84223_m:12",12,24.7084460627637,7.1738250986828,22.7694345913224,1.82647643282207e-06,0.000378377479415916,"IQCG",null,0]
["minus","3:58490863-58491013","8309_m:1",1,372.574338581637,7.1738250986828,0.141416926366219,0.706876439349416,1,"ACOX2","validated",-1]
["minus","3:58494620-58494752","8309_m:2",2,561.76780495197,7.1738250986828,0.0759097493064473,0.782918882882338,1,"ACOX2","validated",-1]
["minus","3:58502933-58503150","8309_m:3",3,830.464329544607,7.1738250986828,0.026155984181969,0.87151996099254,1,"ACOX2","validated",-1]
["minus","3:58508223-58508328","8309_m:4",4,401.223702600568,7.1738250986828,0.21822989778957,0.640391969854787,1,"ACOX2","validated",-1]
["minus","3:58510153-58510332","8309_m:5",5,491.344921013895,7.1738250986828,0.15637963647896,0.692511809525073,1,"ACOX2","validated",-1]
["minus","3:58512193-58512383","8309_m:6",6,439.806721709149,7.1738250986828,0.163333222069923,0.686106058213549,1,"ACOX2","validated",-1]
["minus","3:58514521-58514683","8309_m:7",7,47.4389919472232,7.1738250986828,1.12108553457438,0.28968483031394,1,"ACOX2",null,0]
["minus","3:58516193-58516365","8309_m:8",8,41.3110611338014,7.1738250986828,0.714269762254844,0.398029988031993,1,"ACOX2",null,0]
["minus","3:58516978-58517093","8309_m:9",9,33.3663809390071,7.1738250986828,0.65163094165473,0.419530178239848,1,"ACOX2",null,0]
["minus","3:58517420-58517539","8309_m:10",10,31.7937318922573,7.1738250986828,0.118936467144522,0.730190851307408,1,"ACOX2",null,0]
["minus","3:58519172-58519279","8309_m:11",11,26.6534422640503,7.1738250986828,0.0564200151020486,0.812246441627424,1,"ACOX2",null,0]
["minus","3:58519721-58519872","8309_m:12",12,32.3507374566403,7.1738250986828,0.800495374052844,0.370945302092576,1,"ACOX2",null,0]
["minus","3:58520087-58520249","8309_m:13",13,32.3723452450292,7.1738250986828,0.49996786036354,0.479514244403675,1,"ACOX2",null,0]
["minus","3:58520674-58520924","8309_m:14",14,44.0727089722737,7.1738250986828,0.348030647423002,0.555230055371981,1,"ACOX2",null,0]
["minus","3:58522846-58522929","8309_m:15",15,5.38910800394381,7.1738250986828,0.313561945924448,0.575502613947014,1,"ACOX2",null,"NA"]
["plus","6:76458909-76459140","4646_p:1",1,259.93882709316,7.1738250986828,0.411302765747678,0.521309012507267,1,"MYO6",null,0]
["plus","6:76527218-76527381","4646_p:2",2,484.192876545737,7.1738250986828,0.444375169710838,0.505018271475586,1,"MYO6",null,0]
["plus","6:76532499-76532568","4646_p:3",3,341.399333144959,7.1738250986828,0.52227259979918,0.469873862355868,1,"MYO6",null,0]
["plus","6:76538257-76538330","4646_p:4",4,309.28185576946,7.1738250986828,0.450430124801642,0.502130765709868,1,"MYO6",null,0]
["plus","6:76540133-76540262","4646_p:5",5,485.584949893128,7.1738250986828,0.544815559343988,0.460443825942354,1,"MYO6",null,0]
["plus","6:76542559-76542664","4646_p:6",6,427.515017665814,7.1738250986828,0.543004381597711,0.461190273497163,1,"MYO6",null,0]
["plus","6:76545618-76545673","4646_p:7",7,304.838872365867,7.1738250986828,0.484482115734863,0.486399086111845,1,"MYO6",null,0]
["plus","6:76550302-76550399","4646_p:8",8,448.736540246579,7.1738250986828,0.510399147515272,0.474966119218624,1,"MYO6",null,0]
["plus","6:76550931-76551095","4646_p:9",9,606.945560817553,7.1738250986828,0.44003464862908,0.507105732417732,1,"MYO6",null,0]
["plus","6:76554614-76554694","4646_p:10",10,423.729616332949,7.1738250986828,0.500872396107297,0.479117049537293,1,"MYO6",null,0]
["plus","6:76558068-76558248","4646_p:11",11,710.689045812786,7.1738250986828,0.334112179854856,0.563247661752253,1,"MYO6",null,0]
["plus","6:76564856-76565000","4646_p:12",12,665.569948786726,7.1738250986828,0.353767849937867,0.551987952067716,1,"MYO6",null,0]
["plus","6:76566814-76566971","4646_p:13",13,703.75845954242,7.1738250986828,0.261819384435512,0.608872959672676,1,"MYO6",null,0]
["plus","6:76568619-76568710","4646_p:14",14,446.707905324919,7.1738250986828,0.26267373751034,0.608289183174397,1,"MYO6",null,0]
["plus","6:76570740-76570812","4646_p:15",15,463.274607284599,7.1738250986828,0.281444207135792,0.595756190955768,1,"MYO6",null,0]
["plus","6:76572313-76572440","4646_p:16",16,805.53497935823,7.1738250986828,0.232492892297159,0.629681515694167,1,"MYO6",null,0]
["plus","6:76576243-76576338","4646_p:17",17,720.230121802472,7.1738250986828,0.215672279966384,0.642357395672772,1,"MYO6",null,0]
["plus","6:76576649-76576822","4646_p:18",18,1079.75391388192,7.1738250986828,0.142019303802954,0.70628174659038,1,"MYO6",null,0]
["plus","6:76580364-76580402","4646_p:19",19,443.035436178244,7.1738250986828,0.145116944331676,0.70324615308338,1,"MYO6",null,0]
["plus","6:76582924-76583017","4646_p:20",20,747.157969458239,7.1738250986828,0.0982341538765468,0.753959097965242,1,"MYO6",null,0]
["plus","6:76589537-76589667","4646_p:21",21,941.391971849802,7.1738250986828,0.0872141801737598,0.767749080468044,1,"MYO6",null,0]
["plus","6:76589760-76589837","4646_p:22",22,606.991240236493,7.1738250986828,0.0479227484574949,0.826718091961103,1,"MYO6",null,0]
["plus","6:76591406-76591535","4646_p:23",23,878.284862121267,7.1738250986828,0.0449776217792532,0.832045182773176,1,"MYO6",null,0]
["plus","6:76595721-76595811","4646_p:24",24,790.521667195576,7.1738250986828,0.0474573236897413,0.827548308357098,1,"MYO6",null,0]
["plus","6:76596561-76596711","4646_p:25",25,1201.51453982804,7.1738250986828,0.0206667903512425,0.885690394492571,1,"MYO6",null,0]
["plus","6:76599774-76599982","4646_p:26",26,1869.83822376528,7.1738250986828,0.0011723663265002,0.972685901115815,1,"MYO6",null,0]
["plus","6:76600945-76601023","4646_p:27",27,756.506880600985,7.1738250986828,0.0414574745846039,0.838657428785024,1,"MYO6",null,0]
["plus","6:76602247-76602407","4646_p:28",28,941.723912219168,7.1738250986828,0.0988912907123449,0.753164207011255,1,"MYO6",null,0]
["plus","6:76603648-76604977","4646_p:29",29,408.786349410763,7.1738250986828,15.6025242888682,7.81501893252544e-05,0.00792714746503559,"MYO6",null,-1]
["plus","6:76608090-76608128","4646_p:30",30,164.783124455632,7.1738250986828,25.7092933300264,3.96911111004446e-07,0.000102888180219264,"MYO6","validated",-1]
["plus","6:76617322-76617425","4646_p:31",31,786.568842193913,7.1738250986828,0.0409554314792331,0.839623975079298,1,"MYO6",null,0]
["plus","6:76618213-76618344","4646_p:32",32,1116.34073766769,7.1738250986828,0.0613686828110076,0.804345614478128,1,"MYO6",null,0]
["plus","6:76621389-76621415","4646_p:33",33,30.2321060595703,7.1738250986828,6.10241462748309,0.0134997298689588,0.446735741621005,"MYO6",null,1]
["plus","6:76623780-76623998","4646_p:34",34,2240.96556240742,7.1738250986828,0.0059239385627734,0.938649696613092,1,"MYO6",null,0]
["plus","6:76624530-76629254","4646_p:35",35,12604.8652223783,7.1738250986828,0.45693230435063,0.499061165447355,1,"MYO6",null,0]
["minus","8:80870492-80870670","7163_m:1",1,54.8034293394111,7.1738250986828,0.305931255064934,0.580187728700878,1,"TPD52",null,0]
["minus","8:80947105-80950470","7163_m:2",2,35129.3882297379,7.1738250986828,0.251728925890347,0.615860310099448,1,"TPD52",null,0]
["minus","8:80954855-80954903","7163_m:3",3,1848.00106858258,7.1738250986828,0.0101244180114008,0.919851986986305,1,"TPD52",null,0]
["minus","8:80956402-80956443","7163_m:4",4,31.3063188981565,7.1738250986828,2.55938798995339,0.1096410203437,1,"TPD52",null,0]
["minus","8:80962680-80962706","7163_m:5",5,5.02972597959987,7.1738250986828,1.2568344274041,0.262251141908486,1,"TPD52",null,0]
["minus","8:80963762-80963863","7163_m:6",6,3033.94267161358,7.1738250986828,0.00252571709279437,0.959917977597436,1,"TPD52",null,0]
["minus","8:80964841-80964910","7163_m:7",7,14.7624460205874,7.1738250986828,1.82130574349139,0.177157929120332,1,"TPD52",null,0]
["minus","8:80965517-80965665","7163_m:8",8,4051.63547577577,7.1738250986828,0.0102895159943728,0.91920336653462,1,"TPD52",null,0]
["minus","8:80976713-80976828","7163_m:9",9,2482.5380086069,7.1738250986828,0.0676334420750209,0.794814172252011,1,"TPD52",null,0]
["minus","8:80992550-80993010","7163_m:10",10,1803.23226982233,7.1738250986828,62.9990521527288,2.06806078014666e-15,1.92991432003286e-12,"TPD52","validated",-1]
["minus","8:81083256-81083345","7163_m:11",11,7.00998074451455,7.1738250986828,3.23656141249012,0.0720116286072175,1,"TPD52",null,0]
["minus","8:81083660-81083836","7163_m:12",12,577.021770726272,7.1738250986828,1.26541148033721,0.260629251298781,1,"TPD52",null,0]

{"sheet":"chr22","index":1,"n_rows":60,"n_cols":10,"rows_kept":60,"flags":["formulas_cached_only"]}
["Validated genes analyzed with all genes on chr22, results for significant exons on chr22 (p<0.05)"]
["Overlap with Radium/Rutgers dataset"]
["DEXseq_id","strand","location","groupID","featureID","exonBaseMean","dispersion","stat","pvalue","padj"]
["10369_m:4","-","22:37098411-37098690","10369_m:4",4,0.3932011,{"v":1e-08,"d":"1.00E-08"},1193.676025,{"v":1.44e-261,"d":"1.44E-261"},6.57e-258]
["10369_m:1","-","22:36956916-36960933","10369_m:1",1,6.402940961,{"v":1e-08,"d":"1.00E-08"},397.4986533,{"v":1.93e-88,"d":"1.93E-88"},4.39e-85]
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